Query 020091
Match_columns 331
No_of_seqs 238 out of 2286
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 06:56:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020091.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020091hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0790 FOG: TPR repeat, SEL1 99.9 9.3E-23 2E-27 182.8 26.8 207 76-306 52-279 (292)
2 KOG4626 O-linked N-acetylgluco 99.9 5.5E-23 1.2E-27 189.1 19.7 237 78-330 197-488 (966)
3 KOG4626 O-linked N-acetylgluco 99.9 1.2E-22 2.7E-27 186.8 22.0 247 68-330 153-420 (966)
4 KOG1550 Extracellular protein 99.9 9.2E-22 2E-26 189.7 24.7 237 89-326 232-537 (552)
5 COG0790 FOG: TPR repeat, SEL1 99.9 4.5E-19 9.7E-24 158.9 24.9 186 105-309 41-236 (292)
6 KOG1550 Extracellular protein 99.8 1.8E-19 3.9E-24 173.9 23.1 228 81-309 177-442 (552)
7 TIGR00990 3a0801s09 mitochondr 99.8 2.2E-17 4.7E-22 162.7 30.1 246 70-330 132-465 (615)
8 PRK15174 Vi polysaccharide exp 99.8 4.7E-17 1E-21 160.7 30.6 243 74-330 85-384 (656)
9 TIGR00990 3a0801s09 mitochondr 99.8 1.2E-16 2.6E-21 157.5 28.7 240 78-329 307-573 (615)
10 PRK15174 Vi polysaccharide exp 99.8 2.4E-16 5.3E-21 155.6 28.8 251 68-330 45-350 (656)
11 PRK11788 tetratricopeptide rep 99.8 6.3E-16 1.4E-20 143.9 27.5 244 72-330 42-314 (389)
12 TIGR02917 PEP_TPR_lipo putativ 99.7 3.1E-15 6.8E-20 152.3 30.3 239 72-325 608-898 (899)
13 PRK09782 bacteriophage N4 rece 99.7 3.1E-15 6.8E-20 151.8 29.3 236 78-328 489-741 (987)
14 TIGR02917 PEP_TPR_lipo putativ 99.7 1.8E-15 3.8E-20 154.2 27.7 251 65-329 22-326 (899)
15 KOG1126 DNA-binding cell divis 99.7 8.3E-16 1.8E-20 143.5 22.0 236 78-329 332-622 (638)
16 PRK11447 cellulose synthase su 99.7 4.5E-15 9.6E-20 155.7 30.2 56 73-134 277-332 (1157)
17 PRK11447 cellulose synthase su 99.7 5.4E-15 1.2E-19 155.1 28.9 239 74-328 360-701 (1157)
18 KOG2003 TPR repeat-containing 99.7 1.5E-15 3.3E-20 136.1 20.7 247 69-327 423-689 (840)
19 TIGR02521 type_IV_pilW type IV 99.7 7.1E-15 1.5E-19 125.7 24.5 197 100-329 30-234 (234)
20 KOG4014 Uncharacterized conser 99.7 9.4E-16 2E-20 121.9 15.9 163 79-261 49-233 (248)
21 PRK09782 bacteriophage N4 rece 99.7 1.4E-14 3E-19 147.2 28.6 239 79-330 452-709 (987)
22 PRK11788 tetratricopeptide rep 99.7 4.7E-14 1E-18 131.4 28.0 242 71-325 75-345 (389)
23 KOG1125 TPR repeat-containing 99.7 7.9E-15 1.7E-19 135.1 22.0 231 69-313 289-559 (579)
24 KOG1155 Anaphase-promoting com 99.7 1.1E-14 2.3E-19 130.9 21.9 236 61-325 258-551 (559)
25 PRK12370 invasion protein regu 99.7 7.6E-14 1.6E-18 135.6 26.5 186 77-293 273-470 (553)
26 COG3063 PilF Tfp pilus assembl 99.7 5.6E-14 1.2E-18 116.2 21.3 196 101-329 35-238 (250)
27 KOG1155 Anaphase-promoting com 99.6 9.3E-14 2E-18 125.0 23.1 211 102-326 228-494 (559)
28 KOG1126 DNA-binding cell divis 99.6 5.5E-15 1.2E-19 138.1 15.7 220 101-330 317-589 (638)
29 PF13429 TPR_15: Tetratricopep 99.6 3.7E-15 7.9E-20 132.8 13.0 245 69-326 12-276 (280)
30 PRK11189 lipoprotein NlpI; Pro 99.6 2.1E-13 4.5E-18 122.3 23.1 214 81-306 42-279 (296)
31 TIGR02521 type_IV_pilW type IV 99.6 1E-12 2.2E-17 112.3 25.2 195 66-293 32-232 (234)
32 PRK10049 pgaA outer membrane p 99.6 1.2E-12 2.6E-17 131.9 28.5 87 76-169 60-148 (765)
33 PRK10049 pgaA outer membrane p 99.6 2.6E-12 5.6E-17 129.5 30.3 97 230-330 361-459 (765)
34 PRK11189 lipoprotein NlpI; Pro 99.6 2E-12 4.3E-17 115.9 26.3 182 68-263 67-267 (296)
35 KOG1173 Anaphase-promoting com 99.6 3.3E-13 7.3E-18 124.1 20.7 222 73-308 286-535 (611)
36 KOG2002 TPR-containing nuclear 99.6 5.7E-13 1.2E-17 129.1 22.8 236 81-330 146-412 (1018)
37 KOG4014 Uncharacterized conser 99.6 3.7E-13 8E-18 107.2 17.0 176 99-307 32-211 (248)
38 PRK12370 invasion protein regu 99.6 9.3E-13 2E-17 128.1 23.3 196 103-330 260-473 (553)
39 KOG1129 TPR repeat-containing 99.6 6.3E-13 1.4E-17 115.0 19.1 212 106-329 228-460 (478)
40 KOG1129 TPR repeat-containing 99.5 4.1E-13 9E-18 116.1 15.9 205 77-296 235-461 (478)
41 COG3063 PilF Tfp pilus assembl 99.5 1E-12 2.3E-17 108.7 17.1 162 137-327 35-202 (250)
42 KOG2002 TPR-containing nuclear 99.5 1.7E-11 3.7E-16 119.1 26.2 239 79-330 250-528 (1018)
43 KOG1173 Anaphase-promoting com 99.5 6.1E-12 1.3E-16 115.9 20.8 245 69-330 248-521 (611)
44 KOG2076 RNA polymerase III tra 99.5 4.2E-11 9E-16 115.7 27.1 242 67-324 141-509 (895)
45 KOG0547 Translocase of outer m 99.5 1E-11 2.2E-16 112.7 20.6 214 73-299 334-572 (606)
46 KOG2003 TPR repeat-containing 99.5 1.2E-11 2.5E-16 111.4 19.6 199 99-309 488-707 (840)
47 PF13429 TPR_15: Tetratricopep 99.4 8.9E-13 1.9E-17 117.4 9.3 214 104-331 11-247 (280)
48 KOG1840 Kinesin light chain [C 99.4 2.9E-11 6.3E-16 113.9 18.8 207 74-292 208-478 (508)
49 KOG0547 Translocase of outer m 99.4 4.8E-10 1E-14 102.0 24.1 213 101-325 326-564 (606)
50 KOG1125 TPR repeat-containing 99.3 7.6E-11 1.7E-15 109.1 18.4 212 105-328 289-528 (579)
51 PRK10370 formate-dependent nit 99.3 1.7E-10 3.7E-15 97.1 17.4 120 173-297 52-177 (198)
52 TIGR03302 OM_YfiO outer membra 99.3 8E-10 1.7E-14 95.7 21.2 185 99-329 31-234 (235)
53 PRK14574 hmsH outer membrane p 99.3 4.9E-09 1.1E-13 105.2 29.2 244 74-331 111-517 (822)
54 KOG1840 Kinesin light chain [C 99.3 7.9E-10 1.7E-14 104.3 21.6 210 102-325 200-477 (508)
55 PRK10747 putative protoheme IX 99.3 6.4E-09 1.4E-13 97.3 27.0 203 108-326 160-389 (398)
56 KOG1130 Predicted G-alpha GTPa 99.3 9.1E-11 2E-15 104.6 13.5 221 75-307 65-366 (639)
57 TIGR00540 hemY_coli hemY prote 99.3 7.3E-09 1.6E-13 97.3 26.4 242 69-325 122-397 (409)
58 COG2956 Predicted N-acetylgluc 99.2 3.2E-09 7E-14 92.2 21.1 239 76-330 46-314 (389)
59 PRK15359 type III secretion sy 99.2 5.8E-10 1.3E-14 89.0 15.6 110 100-238 23-136 (144)
60 TIGR03302 OM_YfiO outer membra 99.2 2.4E-09 5.2E-14 92.7 20.3 183 62-292 30-231 (235)
61 PLN03218 maturation of RBCL 1; 99.2 6.7E-08 1.4E-12 99.7 32.5 240 77-325 484-781 (1060)
62 PLN03218 maturation of RBCL 1; 99.2 6.4E-08 1.4E-12 99.8 32.4 237 75-324 447-710 (1060)
63 PRK14574 hmsH outer membrane p 99.2 2.6E-08 5.7E-13 100.0 27.7 256 65-329 34-398 (822)
64 PLN02789 farnesyltranstransfer 99.2 2.2E-08 4.7E-13 90.3 24.5 201 77-308 49-267 (320)
65 KOG1130 Predicted G-alpha GTPa 99.2 2.9E-10 6.3E-15 101.5 11.5 239 73-325 25-342 (639)
66 PRK15359 type III secretion sy 99.2 2.1E-09 4.5E-14 85.8 15.2 118 180-306 13-136 (144)
67 COG2956 Predicted N-acetylgluc 99.1 4.8E-08 1E-12 85.0 22.3 200 118-327 48-278 (389)
68 PLN03081 pentatricopeptide (PP 99.1 5.8E-08 1.2E-12 97.5 25.2 207 74-294 96-355 (697)
69 PRK10747 putative protoheme IX 99.1 1.1E-07 2.5E-12 88.9 25.4 246 69-330 88-360 (398)
70 PRK10370 formate-dependent nit 99.1 6.5E-09 1.4E-13 87.5 15.3 119 118-264 52-176 (198)
71 cd05804 StaR_like StaR_like; a 99.1 5.7E-08 1.2E-12 89.3 22.7 186 98-295 3-217 (355)
72 PLN03081 pentatricopeptide (PP 99.1 8.5E-08 1.8E-12 96.3 25.4 234 77-330 271-526 (697)
73 PRK15179 Vi polysaccharide bio 99.1 2.6E-08 5.7E-13 98.3 20.7 130 135-293 84-217 (694)
74 TIGR00540 hemY_coli hemY prote 99.0 1.4E-07 3E-12 88.7 24.5 253 68-330 87-369 (409)
75 KOG2076 RNA polymerase III tra 99.0 1.6E-07 3.5E-12 91.4 24.5 222 102-331 140-482 (895)
76 PRK15363 pathogenicity island 99.0 9.2E-09 2E-13 81.6 12.0 97 100-225 34-132 (157)
77 KOG0548 Molecular co-chaperone 99.0 3E-07 6.6E-12 85.0 23.1 93 71-169 8-102 (539)
78 PRK15179 Vi polysaccharide bio 99.0 7.6E-08 1.6E-12 95.0 19.9 129 100-261 85-217 (694)
79 PRK14720 transcript cleavage f 98.9 1.1E-07 2.4E-12 95.0 19.9 197 65-297 30-256 (906)
80 TIGR02552 LcrH_SycD type III s 98.9 2.3E-08 5.1E-13 78.6 12.4 99 99-226 15-115 (135)
81 PRK15363 pathogenicity island 98.9 2.7E-08 5.9E-13 78.9 12.5 95 68-168 38-134 (157)
82 TIGR02552 LcrH_SycD type III s 98.9 3.2E-08 6.9E-13 77.8 13.1 100 190-297 15-118 (135)
83 PF14938 SNAP: Soluble NSF att 98.9 2.3E-07 4.9E-12 82.7 19.9 120 194-321 116-257 (282)
84 PF14938 SNAP: Soluble NSF att 98.9 1.3E-07 2.8E-12 84.3 18.1 55 106-165 40-102 (282)
85 PLN02789 farnesyltranstransfer 98.9 5.9E-07 1.3E-11 81.1 22.0 185 118-329 50-252 (320)
86 cd05804 StaR_like StaR_like; a 98.9 3.8E-07 8.3E-12 83.8 21.5 81 173-261 127-215 (355)
87 KOG4162 Predicted calmodulin-b 98.9 4.7E-07 1E-11 87.0 22.0 66 97-166 474-542 (799)
88 COG4783 Putative Zn-dependent 98.9 1.1E-06 2.4E-11 80.7 22.9 148 98-293 303-454 (484)
89 KOG0495 HAT repeat protein [RN 98.9 9.2E-07 2E-11 83.6 22.7 250 68-331 587-884 (913)
90 COG5010 TadD Flp pilus assembl 98.9 4.8E-07 1E-11 76.8 18.8 158 98-289 64-227 (257)
91 PRK14720 transcript cleavage f 98.9 4.3E-07 9.4E-12 90.8 21.3 214 98-330 28-255 (906)
92 KOG1127 TPR repeat-containing 98.9 9.7E-08 2.1E-12 93.7 15.9 126 191-322 774-908 (1238)
93 KOG1174 Anaphase-promoting com 98.8 7.9E-07 1.7E-11 79.9 20.1 173 118-297 313-504 (564)
94 PLN03077 Protein ECB2; Provisi 98.8 1.8E-06 3.9E-11 88.8 25.9 145 174-330 538-689 (857)
95 KOG1127 TPR repeat-containing 98.8 1.1E-06 2.4E-11 86.5 22.3 94 68-166 5-103 (1238)
96 KOG0548 Molecular co-chaperone 98.8 1.2E-06 2.6E-11 81.2 19.9 212 74-300 233-462 (539)
97 PLN03088 SGT1, suppressor of 98.8 2E-07 4.2E-12 85.8 14.7 95 118-237 15-113 (356)
98 KOG1156 N-terminal acetyltrans 98.8 3.8E-06 8.2E-11 79.4 22.8 256 66-331 8-287 (700)
99 KOG0495 HAT repeat protein [RN 98.8 8.8E-06 1.9E-10 77.2 25.1 243 74-330 525-785 (913)
100 PF13414 TPR_11: TPR repeat; P 98.8 2.8E-08 6.2E-13 68.5 6.7 65 100-168 2-69 (69)
101 KOG0624 dsRNA-activated protei 98.8 1.5E-05 3.4E-10 70.3 24.9 249 69-331 42-374 (504)
102 PRK02603 photosystem I assembl 98.7 4.1E-07 9E-12 74.8 14.6 82 98-204 32-118 (172)
103 CHL00033 ycf3 photosystem I as 98.7 3E-07 6.5E-12 75.3 13.6 100 98-222 32-139 (168)
104 KOG1128 Uncharacterized conser 98.7 3.8E-07 8.3E-12 87.1 15.3 198 74-293 407-616 (777)
105 PLN03077 Protein ECB2; Provisi 98.7 3.8E-06 8.2E-11 86.4 23.1 110 209-324 537-651 (857)
106 PLN03088 SGT1, suppressor of 98.7 4.3E-07 9.4E-12 83.5 14.4 97 67-169 4-102 (356)
107 COG3071 HemY Uncharacterized e 98.7 1.7E-05 3.7E-10 71.2 23.6 237 70-325 89-388 (400)
108 PF12569 NARP1: NMDA receptor- 98.7 4.3E-05 9.3E-10 73.2 27.5 245 69-327 8-291 (517)
109 PF04733 Coatomer_E: Coatomer 98.7 1.2E-07 2.5E-12 84.5 9.5 196 100-331 65-269 (290)
110 COG5010 TadD Flp pilus assembl 98.7 1.9E-06 4.1E-11 73.3 16.0 158 135-324 65-228 (257)
111 KOG0624 dsRNA-activated protei 98.7 3.2E-05 7E-10 68.3 23.9 223 100-330 37-301 (504)
112 TIGR02795 tol_pal_ybgF tol-pal 98.6 1.4E-06 3E-11 66.5 12.7 99 101-225 2-105 (119)
113 PF13414 TPR_11: TPR repeat; P 98.6 1.9E-07 4.2E-12 64.3 7.0 65 136-225 2-67 (69)
114 KOG0550 Molecular chaperone (D 98.6 2.4E-06 5.2E-11 76.9 15.1 238 74-325 58-348 (486)
115 KOG1128 Uncharacterized conser 98.6 8E-07 1.7E-11 84.9 12.8 165 78-261 437-616 (777)
116 KOG1174 Anaphase-promoting com 98.6 3.8E-05 8.1E-10 69.4 22.2 219 99-330 230-503 (564)
117 PF09976 TPR_21: Tetratricopep 98.6 2E-06 4.4E-11 68.6 13.2 126 68-223 14-145 (145)
118 PRK04841 transcriptional regul 98.6 1E-05 2.2E-10 83.7 21.8 241 75-326 462-759 (903)
119 PRK02603 photosystem I assembl 98.6 2.5E-06 5.5E-11 70.1 14.0 83 190-280 33-122 (172)
120 cd00189 TPR Tetratricopeptide 98.5 1.2E-06 2.6E-11 62.8 10.4 94 103-225 2-97 (100)
121 KOG3060 Uncharacterized conser 98.5 5.7E-05 1.2E-09 64.1 21.0 141 118-263 65-222 (289)
122 PF12895 Apc3: Anaphase-promot 98.5 3.9E-07 8.4E-12 65.5 6.5 81 78-163 2-84 (84)
123 cd00189 TPR Tetratricopeptide 98.5 3E-06 6.4E-11 60.6 10.5 93 194-294 2-98 (100)
124 TIGR02795 tol_pal_ybgF tol-pal 98.4 5.5E-06 1.2E-10 63.1 12.0 99 67-169 4-108 (119)
125 PF13432 TPR_16: Tetratricopep 98.4 1.1E-06 2.3E-11 59.8 6.7 61 105-169 1-63 (65)
126 PF12688 TPR_5: Tetratrico pep 98.4 7.3E-06 1.6E-10 62.8 11.9 26 140-165 4-29 (120)
127 PRK10866 outer membrane biogen 98.4 6.9E-05 1.5E-09 65.1 19.4 81 100-202 31-116 (243)
128 CHL00033 ycf3 photosystem I as 98.4 1.4E-05 3E-10 65.5 14.4 111 173-291 12-140 (168)
129 PRK10803 tol-pal system protei 98.4 8.9E-06 1.9E-10 71.3 13.9 100 66-169 143-249 (263)
130 PF09976 TPR_21: Tetratricopep 98.4 2E-05 4.2E-10 62.9 14.9 92 192-291 48-145 (145)
131 PF13424 TPR_12: Tetratricopep 98.4 9.5E-07 2.1E-11 62.4 6.2 62 101-166 5-75 (78)
132 PF12688 TPR_5: Tetratrico pep 98.4 9.1E-06 2E-10 62.3 11.9 98 101-224 1-103 (120)
133 KOG1156 N-terminal acetyltrans 98.4 0.00016 3.4E-09 68.9 22.3 81 245-325 384-466 (700)
134 KOG2376 Signal recognition par 98.4 0.00018 3.9E-09 67.8 22.1 242 74-324 119-517 (652)
135 PRK11906 transcriptional regul 98.4 4.8E-05 1E-09 70.4 18.2 143 175-321 273-430 (458)
136 PF12895 Apc3: Anaphase-promot 98.4 2.2E-06 4.8E-11 61.5 7.6 77 209-290 2-84 (84)
137 KOG4162 Predicted calmodulin-b 98.3 0.00018 4E-09 69.6 22.1 217 99-323 321-572 (799)
138 PRK10153 DNA-binding transcrip 98.3 2.5E-05 5.4E-10 75.1 16.1 140 154-298 337-487 (517)
139 PRK11906 transcriptional regul 98.3 5.5E-05 1.2E-09 70.0 17.5 168 103-293 257-436 (458)
140 PF13525 YfiO: Outer membrane 98.3 0.00014 3.1E-09 61.4 19.0 177 99-314 3-196 (203)
141 PRK10866 outer membrane biogen 98.3 0.00024 5.3E-09 61.7 20.8 82 64-149 31-118 (243)
142 KOG1586 Protein required for f 98.3 4.1E-05 8.8E-10 64.2 14.9 196 118-324 27-259 (288)
143 KOG0553 TPR repeat-containing 98.3 1.4E-05 2.9E-10 69.5 12.3 120 118-263 94-217 (304)
144 PF12569 NARP1: NMDA receptor- 98.3 9.7E-05 2.1E-09 70.8 19.4 219 100-330 3-260 (517)
145 PRK04841 transcriptional regul 98.3 0.00022 4.7E-09 74.0 23.7 238 76-325 420-718 (903)
146 COG4235 Cytochrome c biogenesi 98.3 2.1E-05 4.6E-10 68.5 13.2 121 172-297 134-260 (287)
147 KOG3060 Uncharacterized conser 98.3 0.00019 4.2E-09 61.0 18.2 161 65-234 51-231 (289)
148 PRK15331 chaperone protein Sic 98.3 1.9E-05 4E-10 63.2 11.6 97 100-225 36-134 (165)
149 COG1729 Uncharacterized protei 98.3 2.1E-05 4.6E-10 67.7 12.6 99 67-169 143-247 (262)
150 PRK10803 tol-pal system protei 98.2 3.1E-05 6.8E-10 67.9 13.8 99 101-225 142-246 (263)
151 KOG0553 TPR repeat-containing 98.2 1.7E-05 3.8E-10 68.8 11.5 113 67-188 83-197 (304)
152 COG3071 HemY Uncharacterized e 98.2 0.0041 8.9E-08 56.2 26.3 214 104-330 87-360 (400)
153 PF13432 TPR_16: Tetratricopep 98.2 6.6E-06 1.4E-10 55.8 6.6 60 233-296 2-63 (65)
154 KOG3617 WD40 and TPR repeat-co 98.2 0.00027 5.8E-09 69.0 19.5 110 102-222 859-993 (1416)
155 KOG2376 Signal recognition par 98.2 0.00058 1.3E-08 64.5 21.1 212 66-296 13-256 (652)
156 smart00671 SEL1 Sel1-like repe 98.2 4.7E-06 1E-10 49.2 4.8 36 101-136 1-36 (36)
157 smart00671 SEL1 Sel1-like repe 98.1 4.9E-06 1.1E-10 49.1 4.6 34 193-226 2-35 (36)
158 KOG1586 Protein required for f 98.1 0.0012 2.6E-08 55.6 19.9 16 173-188 127-142 (288)
159 KOG1941 Acetylcholine receptor 98.1 0.00016 3.6E-09 64.4 15.7 192 70-292 127-359 (518)
160 KOG0543 FKBP-type peptidyl-pro 98.1 4.8E-05 1E-09 68.8 12.6 106 105-239 212-336 (397)
161 KOG3617 WD40 and TPR repeat-co 98.1 0.00015 3.3E-09 70.6 16.5 164 118-291 839-1049(1416)
162 PRK15331 chaperone protein Sic 98.1 1.9E-05 4.2E-10 63.1 8.6 93 68-166 40-134 (165)
163 KOG4340 Uncharacterized conser 98.1 3.7E-05 8E-10 66.7 10.9 186 74-294 19-208 (459)
164 KOG0550 Molecular chaperone (D 98.1 7.5E-05 1.6E-09 67.5 13.2 210 107-328 55-317 (486)
165 PLN03098 LPA1 LOW PSII ACCUMUL 98.1 2E-05 4.3E-10 72.8 9.2 67 97-167 71-142 (453)
166 PF08238 Sel1: Sel1 repeat; I 98.0 6.3E-06 1.4E-10 49.7 3.7 36 192-227 1-39 (39)
167 PF13424 TPR_12: Tetratricopep 98.0 3.4E-05 7.4E-10 54.3 7.9 29 265-293 47-75 (78)
168 PF08238 Sel1: Sel1 repeat; I 98.0 6.8E-06 1.5E-10 49.5 3.6 36 101-136 1-39 (39)
169 PLN03098 LPA1 LOW PSII ACCUMUL 98.0 3.2E-05 6.9E-10 71.4 9.5 71 132-227 70-143 (453)
170 PF13525 YfiO: Outer membrane 98.0 0.00057 1.2E-08 57.8 16.4 148 65-224 5-169 (203)
171 COG4783 Putative Zn-dependent 98.0 0.0032 6.9E-08 58.4 22.1 151 134-313 303-459 (484)
172 COG4235 Cytochrome c biogenesi 98.0 0.00018 4E-09 62.8 13.4 99 98-225 153-256 (287)
173 KOG3081 Vesicle coat complex C 98.0 0.0025 5.3E-08 54.8 19.6 122 210-331 151-275 (299)
174 PRK10153 DNA-binding transcrip 98.0 0.00028 6.1E-09 67.9 15.3 145 91-263 329-484 (517)
175 KOG0543 FKBP-type peptidyl-pro 97.9 0.00033 7.2E-09 63.4 13.6 142 138-293 209-355 (397)
176 KOG4340 Uncharacterized conser 97.9 0.00055 1.2E-08 59.6 14.2 105 118-226 91-208 (459)
177 KOG1941 Acetylcholine receptor 97.9 0.0015 3.3E-08 58.4 16.5 214 67-292 8-274 (518)
178 KOG2471 TPR repeat-containing 97.8 0.00019 4.2E-09 66.2 11.0 100 66-170 241-368 (696)
179 COG0457 NrfG FOG: TPR repeat [ 97.8 0.013 2.8E-07 48.4 24.1 162 101-295 59-233 (291)
180 COG1729 Uncharacterized protei 97.8 0.0004 8.7E-09 60.0 12.1 49 118-166 154-207 (262)
181 PF04733 Coatomer_E: Coatomer 97.8 0.00026 5.7E-09 63.1 11.5 159 100-295 101-267 (290)
182 KOG4555 TPR repeat-containing 97.7 0.00091 2E-08 51.2 11.6 96 143-267 49-150 (175)
183 KOG1070 rRNA processing protei 97.7 0.0099 2.2E-07 61.6 22.0 191 68-294 1461-1664(1710)
184 KOG3785 Uncharacterized conser 97.7 0.0012 2.7E-08 58.8 13.9 191 73-303 30-226 (557)
185 KOG3785 Uncharacterized conser 97.7 0.0099 2.2E-07 53.2 19.4 136 75-224 67-213 (557)
186 PF13371 TPR_9: Tetratricopept 97.7 0.00015 3.2E-09 50.2 6.6 59 107-169 1-61 (73)
187 KOG2047 mRNA splicing factor [ 97.6 0.026 5.7E-07 54.3 22.2 211 76-295 358-617 (835)
188 KOG1585 Protein required for f 97.6 0.0095 2.1E-07 50.7 17.2 176 100-288 30-251 (308)
189 KOG1915 Cell cycle control pro 97.6 0.06 1.3E-06 50.2 24.1 183 136-329 321-538 (677)
190 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.004 8.6E-08 57.7 16.1 107 175-290 184-294 (395)
191 KOG4555 TPR repeat-containing 97.6 0.0022 4.7E-08 49.2 11.7 99 197-303 48-154 (175)
192 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.0022 4.8E-08 59.4 13.8 110 79-222 183-294 (395)
193 PF14559 TPR_19: Tetratricopep 97.5 0.00026 5.7E-09 48.2 5.7 51 118-168 4-56 (68)
194 PF13371 TPR_9: Tetratricopept 97.5 0.00093 2E-08 46.1 7.8 58 144-226 2-59 (73)
195 COG0457 NrfG FOG: TPR repeat [ 97.4 0.054 1.2E-06 44.6 22.7 197 70-296 64-268 (291)
196 COG4105 ComL DNA uptake lipopr 97.4 0.071 1.5E-06 45.9 20.4 101 99-221 32-138 (254)
197 KOG2047 mRNA splicing factor [ 97.4 0.02 4.4E-07 55.0 17.8 200 118-325 360-613 (835)
198 PF13428 TPR_14: Tetratricopep 97.4 0.00047 1E-08 42.7 4.9 43 137-200 1-43 (44)
199 PF14559 TPR_19: Tetratricopep 97.4 0.00059 1.3E-08 46.4 5.7 52 246-297 5-58 (68)
200 KOG1915 Cell cycle control pro 97.3 0.1 2.2E-06 48.7 21.2 233 78-322 154-495 (677)
201 COG4785 NlpI Lipoprotein NlpI, 97.3 0.065 1.4E-06 45.0 18.1 181 100-294 64-267 (297)
202 COG4700 Uncharacterized protei 97.3 0.054 1.2E-06 44.4 17.2 152 107-290 62-219 (251)
203 PF13512 TPR_18: Tetratricopep 97.3 0.011 2.5E-07 46.3 12.9 84 99-204 8-96 (142)
204 PF13512 TPR_18: Tetratricopep 97.3 0.0059 1.3E-07 47.9 11.2 84 65-152 10-99 (142)
205 PF07719 TPR_2: Tetratricopept 97.3 0.00068 1.5E-08 39.1 4.6 33 137-169 1-33 (34)
206 PF00515 TPR_1: Tetratricopept 97.3 0.0007 1.5E-08 39.1 4.5 32 137-168 1-32 (34)
207 COG4700 Uncharacterized protei 97.2 0.061 1.3E-06 44.1 16.4 128 194-329 91-228 (251)
208 KOG1585 Protein required for f 97.1 0.066 1.4E-06 45.7 16.1 193 118-322 24-251 (308)
209 PF00515 TPR_1: Tetratricopept 97.1 0.0012 2.6E-08 38.1 4.3 33 264-296 1-33 (34)
210 PF06552 TOM20_plant: Plant sp 97.1 0.0019 4E-08 52.5 6.7 96 121-233 7-117 (186)
211 COG4785 NlpI Lipoprotein NlpI, 97.0 0.13 2.8E-06 43.2 17.0 164 99-282 97-293 (297)
212 PF07719 TPR_2: Tetratricopept 97.0 0.0016 3.6E-08 37.4 4.4 32 264-295 1-32 (34)
213 PF13281 DUF4071: Domain of un 97.0 0.28 6E-06 45.1 20.4 171 100-295 140-336 (374)
214 PF13428 TPR_14: Tetratricopep 96.9 0.0021 4.6E-08 39.7 4.7 41 101-145 1-43 (44)
215 PF10300 DUF3808: Protein of u 96.9 0.071 1.5E-06 51.0 16.5 112 173-292 246-375 (468)
216 PF13431 TPR_17: Tetratricopep 96.8 0.0011 2.4E-08 38.5 2.6 30 128-157 2-33 (34)
217 KOG1070 rRNA processing protei 96.8 0.25 5.4E-06 51.8 20.2 172 118-323 1471-1659(1710)
218 PF13176 TPR_7: Tetratricopept 96.8 0.0025 5.5E-08 37.4 3.8 27 139-165 1-27 (36)
219 PF13176 TPR_7: Tetratricopept 96.7 0.0031 6.7E-08 37.1 3.9 27 266-292 1-27 (36)
220 PF13431 TPR_17: Tetratricopep 96.7 0.0017 3.6E-08 37.7 2.6 30 255-284 2-33 (34)
221 PF10300 DUF3808: Protein of u 96.6 0.18 3.8E-06 48.3 17.0 149 172-324 200-373 (468)
222 PF09986 DUF2225: Uncharacteri 96.5 0.031 6.8E-07 47.5 10.5 89 118-226 90-195 (214)
223 KOG3081 Vesicle coat complex C 96.5 0.46 9.9E-06 41.2 19.4 127 193-330 109-239 (299)
224 PF13181 TPR_8: Tetratricopept 96.4 0.0056 1.2E-07 35.2 3.7 31 138-168 2-32 (34)
225 PF06552 TOM20_plant: Plant sp 96.3 0.039 8.5E-07 44.9 8.8 51 188-239 21-80 (186)
226 PF09986 DUF2225: Uncharacteri 96.3 0.15 3.2E-06 43.4 12.9 87 79-169 91-197 (214)
227 PF13181 TPR_8: Tetratricopept 96.2 0.0094 2E-07 34.2 3.7 31 265-295 2-32 (34)
228 COG4649 Uncharacterized protei 96.0 0.68 1.5E-05 37.6 14.3 138 144-293 46-196 (221)
229 PF13174 TPR_6: Tetratricopept 95.9 0.011 2.4E-07 33.5 3.2 31 138-168 1-31 (33)
230 PF04184 ST7: ST7 protein; In 95.9 1.7 3.6E-05 41.2 21.1 199 77-307 180-430 (539)
231 KOG2041 WD40 repeat protein [G 95.8 0.15 3.2E-06 49.8 11.9 133 77-224 675-824 (1189)
232 KOG2053 Mitochondrial inherita 95.8 2.2 4.8E-05 43.1 20.1 100 64-169 8-109 (932)
233 KOG2796 Uncharacterized conser 95.6 0.99 2.2E-05 39.2 14.9 141 139-307 179-334 (366)
234 PF08631 SPO22: Meiosis protei 95.5 1.6 3.5E-05 38.6 17.1 154 118-302 6-180 (278)
235 KOG4642 Chaperone-dependent E3 95.5 0.041 8.9E-07 46.7 6.2 82 118-224 23-106 (284)
236 KOG2796 Uncharacterized conser 95.4 0.35 7.5E-06 42.0 11.5 132 192-331 177-319 (366)
237 COG4105 ComL DNA uptake lipopr 95.4 1.6 3.4E-05 37.8 21.2 152 62-225 31-196 (254)
238 PF13174 TPR_6: Tetratricopept 95.4 0.025 5.4E-07 32.0 3.4 30 265-294 1-30 (33)
239 PF05843 Suf: Suppressor of fo 95.3 0.35 7.7E-06 42.9 12.0 115 212-329 17-138 (280)
240 KOG4234 TPR repeat-containing 95.2 0.51 1.1E-05 39.3 11.4 92 107-227 101-199 (271)
241 COG3898 Uncharacterized membra 95.2 2.5 5.5E-05 38.9 23.1 237 69-325 124-390 (531)
242 PF13281 DUF4071: Domain of un 95.1 1.8 3.8E-05 40.0 16.0 171 78-267 154-339 (374)
243 PF13374 TPR_10: Tetratricopep 95.1 0.045 9.8E-07 32.7 4.1 30 137-166 2-31 (42)
244 PF13374 TPR_10: Tetratricopep 94.9 0.058 1.3E-06 32.2 4.2 29 265-293 3-31 (42)
245 PF02259 FAT: FAT domain; Int 94.9 0.9 1.9E-05 41.4 13.9 62 100-165 145-212 (352)
246 smart00028 TPR Tetratricopepti 94.7 0.048 1E-06 29.7 3.3 31 138-168 2-32 (34)
247 KOG4642 Chaperone-dependent E3 94.6 0.11 2.5E-06 44.1 6.3 91 163-261 13-107 (284)
248 smart00028 TPR Tetratricopepti 94.4 0.066 1.4E-06 29.1 3.3 30 265-294 2-31 (34)
249 KOG2471 TPR repeat-containing 94.3 0.19 4.1E-06 47.1 7.6 75 194-276 285-381 (696)
250 KOG3616 Selective LIM binding 94.1 3.4 7.3E-05 41.2 15.8 49 247-295 978-1026(1636)
251 KOG4648 Uncharacterized conser 94.0 0.13 2.8E-06 46.2 5.6 91 106-225 102-194 (536)
252 PF05843 Suf: Suppressor of fo 93.8 2.1 4.5E-05 38.0 13.3 96 191-293 34-136 (280)
253 PF03704 BTAD: Bacterial trans 93.8 0.97 2.1E-05 35.6 10.2 61 228-292 62-124 (146)
254 PF03704 BTAD: Bacterial trans 93.8 1.5 3.3E-05 34.4 11.4 106 143-260 12-124 (146)
255 COG2976 Uncharacterized protei 93.6 1.6 3.5E-05 36.2 11.0 93 104-226 92-189 (207)
256 COG3118 Thioredoxin domain-con 93.5 2 4.3E-05 38.0 12.1 45 118-162 147-193 (304)
257 KOG3616 Selective LIM binding 93.5 2.7 5.8E-05 41.8 14.0 115 102-224 662-793 (1636)
258 COG4649 Uncharacterized protei 93.5 3.6 7.8E-05 33.6 13.3 130 68-225 61-196 (221)
259 COG2976 Uncharacterized protei 93.4 0.47 1E-05 39.3 7.5 95 69-167 93-189 (207)
260 PF08631 SPO22: Meiosis protei 93.1 5.9 0.00013 35.1 22.0 211 76-292 4-274 (278)
261 KOG4234 TPR repeat-containing 93.1 2.6 5.6E-05 35.3 11.4 51 247-297 149-201 (271)
262 PF11207 DUF2989: Protein of u 93.1 0.77 1.7E-05 38.3 8.5 61 94-159 134-200 (203)
263 PF14853 Fis1_TPR_C: Fis1 C-te 92.9 0.62 1.3E-05 29.9 6.2 47 265-311 2-50 (53)
264 KOG3364 Membrane protein invol 92.9 1.9 4.1E-05 33.5 9.7 85 227-312 31-121 (149)
265 TIGR03504 FimV_Cterm FimV C-te 92.9 0.45 9.7E-06 29.2 5.2 31 267-297 2-32 (44)
266 KOG4648 Uncharacterized conser 92.6 0.44 9.6E-06 42.8 6.9 94 195-296 100-197 (536)
267 PF11207 DUF2989: Protein of u 91.7 1.5 3.3E-05 36.6 8.6 72 211-287 121-201 (203)
268 PF04184 ST7: ST7 protein; In 91.7 4.6 9.9E-05 38.4 12.6 60 103-166 261-324 (539)
269 COG3118 Thioredoxin domain-con 91.6 9.3 0.0002 33.9 17.7 174 120-324 118-299 (304)
270 KOG0545 Aryl-hydrocarbon recep 91.4 3.5 7.6E-05 35.6 10.6 97 102-227 179-295 (329)
271 PF07721 TPR_4: Tetratricopept 91.2 0.27 5.8E-06 26.3 2.6 23 139-161 3-25 (26)
272 PF07721 TPR_4: Tetratricopept 90.6 0.38 8.1E-06 25.7 2.8 24 265-288 2-25 (26)
273 PF09205 DUF1955: Domain of un 90.4 2.2 4.7E-05 33.2 7.7 61 77-143 98-158 (161)
274 PF14853 Fis1_TPR_C: Fis1 C-te 90.3 0.48 1E-05 30.4 3.5 32 138-169 2-33 (53)
275 PF10602 RPN7: 26S proteasome 89.9 4 8.7E-05 33.5 9.7 93 191-291 35-140 (177)
276 PF12968 DUF3856: Domain of Un 89.7 3.7 8E-05 31.3 8.2 87 118-224 22-128 (144)
277 KOG3824 Huntingtin interacting 89.3 1.1 2.4E-05 39.8 6.1 68 69-142 120-189 (472)
278 KOG0551 Hsp90 co-chaperone CNS 89.2 1.4 3E-05 39.5 6.6 91 106-225 86-182 (390)
279 PF12862 Apc5: Anaphase-promot 89.0 1.5 3.2E-05 31.8 5.8 49 118-166 11-70 (94)
280 KOG2610 Uncharacterized conser 88.6 19 0.0004 32.8 13.9 28 191-222 208-235 (491)
281 KOG0545 Aryl-hydrocarbon recep 88.6 15 0.00034 31.8 13.1 86 209-298 191-298 (329)
282 KOG3824 Huntingtin interacting 88.5 1.7 3.8E-05 38.6 6.7 64 103-171 119-184 (472)
283 PF07720 TPR_3: Tetratricopept 88.3 1.3 2.9E-05 25.8 4.1 30 265-294 2-33 (36)
284 PF12862 Apc5: Anaphase-promot 88.0 4.3 9.3E-05 29.4 7.7 57 74-134 7-70 (94)
285 PF12968 DUF3856: Domain of Un 87.9 8.9 0.00019 29.2 9.2 94 69-166 13-129 (144)
286 KOG2300 Uncharacterized conser 87.8 26 0.00057 33.4 15.7 124 194-323 48-192 (629)
287 PF02259 FAT: FAT domain; Int 87.1 21 0.00045 32.3 13.6 32 136-167 145-176 (352)
288 PF04190 DUF410: Protein of un 86.7 21 0.00045 31.3 12.7 78 249-327 74-170 (260)
289 PF07720 TPR_3: Tetratricopept 86.3 2.5 5.4E-05 24.7 4.5 29 138-166 2-32 (36)
290 PF10373 EST1_DNA_bind: Est1 D 85.7 3 6.4E-05 36.6 7.0 58 215-276 1-62 (278)
291 KOG4507 Uncharacterized conser 85.6 3.1 6.7E-05 40.3 7.1 84 208-295 619-707 (886)
292 cd02682 MIT_AAA_Arch MIT: doma 85.0 3.1 6.6E-05 28.9 5.2 22 272-293 14-35 (75)
293 KOG1308 Hsp70-interacting prot 84.9 0.9 2E-05 40.9 3.1 85 118-227 127-213 (377)
294 KOG0985 Vesicle coat protein c 84.6 57 0.0012 34.3 20.7 182 118-321 1088-1338(1666)
295 KOG2610 Uncharacterized conser 84.6 32 0.00069 31.4 15.4 79 209-291 188-274 (491)
296 cd02680 MIT_calpain7_2 MIT: do 84.4 2 4.3E-05 29.8 4.0 33 152-188 2-34 (75)
297 KOG1308 Hsp70-interacting prot 83.7 0.58 1.3E-05 42.1 1.5 95 68-168 117-213 (377)
298 KOG0687 26S proteasome regulat 83.3 7.4 0.00016 35.0 8.0 95 191-292 103-209 (393)
299 PF14561 TPR_20: Tetratricopep 82.5 8.3 0.00018 27.7 6.9 44 126-169 9-54 (90)
300 PF10602 RPN7: 26S proteasome 82.5 12 0.00025 30.8 8.7 97 101-224 36-141 (177)
301 PF14561 TPR_20: Tetratricopep 82.2 16 0.00034 26.3 8.3 60 254-313 10-75 (90)
302 PF04781 DUF627: Protein of un 82.1 14 0.00029 27.8 7.9 95 72-166 3-107 (111)
303 cd02681 MIT_calpain7_1 MIT: do 81.9 2.5 5.5E-05 29.4 3.8 31 154-188 4-34 (76)
304 PF09613 HrpB1_HrpK: Bacterial 81.7 23 0.0005 28.5 9.7 73 75-153 20-94 (160)
305 PF10373 EST1_DNA_bind: Est1 D 81.5 5.2 0.00011 35.0 6.8 58 179-240 1-62 (278)
306 COG3898 Uncharacterized membra 81.2 47 0.001 30.9 24.5 240 76-329 95-360 (531)
307 KOG0890 Protein kinase of the 80.9 35 0.00075 38.9 13.4 68 99-170 1668-1735(2382)
308 KOG0376 Serine-threonine phosp 80.4 2.5 5.4E-05 39.8 4.3 85 209-297 17-105 (476)
309 TIGR03504 FimV_Cterm FimV C-te 80.4 3.8 8.3E-05 25.1 3.8 29 140-168 2-30 (44)
310 KOG4814 Uncharacterized conser 80.3 65 0.0014 32.0 15.1 68 118-185 367-453 (872)
311 KOG1914 mRNA cleavage and poly 79.5 63 0.0014 31.4 13.5 47 247-293 416-464 (656)
312 PF04212 MIT: MIT (microtubule 79.4 6.7 0.00014 26.5 5.3 21 272-292 13-33 (69)
313 KOG4507 Uncharacterized conser 79.0 2.8 6.1E-05 40.5 4.2 85 245-329 620-707 (886)
314 cd02683 MIT_1 MIT: domain cont 78.8 4 8.6E-05 28.5 4.0 31 154-188 4-34 (77)
315 cd02681 MIT_calpain7_1 MIT: do 78.3 5.7 0.00012 27.6 4.6 20 274-293 16-35 (76)
316 KOG2053 Mitochondrial inherita 77.8 90 0.0019 32.2 21.4 93 63-161 41-138 (932)
317 PF09205 DUF1955: Domain of un 77.7 23 0.00049 27.7 8.0 43 261-303 117-159 (161)
318 COG2909 MalT ATP-dependent tra 77.7 91 0.002 32.2 17.1 77 247-323 596-684 (894)
319 COG4976 Predicted methyltransf 77.4 5.1 0.00011 34.2 4.9 53 245-297 8-62 (287)
320 KOG0376 Serine-threonine phosp 77.2 9.4 0.0002 36.1 7.0 92 118-234 17-112 (476)
321 PF04212 MIT: MIT (microtubule 76.7 4.1 8.9E-05 27.5 3.6 13 174-186 19-31 (69)
322 KOG4814 Uncharacterized conser 76.7 16 0.00034 36.0 8.5 82 245-326 367-456 (872)
323 cd02684 MIT_2 MIT: domain cont 76.5 7.6 0.00016 26.9 4.9 33 248-293 3-35 (75)
324 PF10516 SHNi-TPR: SHNi-TPR; 76.5 5.1 0.00011 23.7 3.4 29 265-293 2-30 (38)
325 cd02683 MIT_1 MIT: domain cont 76.0 9.2 0.0002 26.6 5.2 19 274-292 16-34 (77)
326 KOG0551 Hsp90 co-chaperone CNS 75.5 15 0.00033 33.2 7.5 92 71-166 87-182 (390)
327 KOG3364 Membrane protein invol 75.5 28 0.0006 27.3 8.0 69 100-169 31-103 (149)
328 PF13041 PPR_2: PPR repeat fam 75.5 11 0.00023 23.4 5.1 44 264-307 3-46 (50)
329 COG4976 Predicted methyltransf 75.1 7.3 0.00016 33.3 5.2 54 118-171 8-63 (287)
330 PF04190 DUF410: Protein of un 75.0 51 0.0011 28.9 10.9 101 118-222 3-116 (260)
331 KOG2300 Uncharacterized conser 75.0 81 0.0018 30.3 20.9 56 102-160 89-150 (629)
332 PF10516 SHNi-TPR: SHNi-TPR; 74.6 5 0.00011 23.7 3.0 29 138-166 2-30 (38)
333 KOG4279 Serine/threonine prote 74.0 62 0.0013 32.8 11.7 91 136-226 200-317 (1226)
334 KOG3783 Uncharacterized conser 73.4 17 0.00038 34.9 7.8 62 104-169 452-523 (546)
335 PF10952 DUF2753: Protein of u 73.4 20 0.00044 27.4 6.7 58 105-166 5-79 (140)
336 PF12739 TRAPPC-Trs85: ER-Golg 73.3 83 0.0018 29.7 15.3 161 104-293 211-399 (414)
337 cd02678 MIT_VPS4 MIT: domain c 73.2 6.7 0.00015 27.1 4.0 31 154-188 4-34 (75)
338 KOG4279 Serine/threonine prote 72.9 27 0.00058 35.2 9.1 21 244-264 378-398 (1226)
339 cd02682 MIT_AAA_Arch MIT: doma 72.9 6.9 0.00015 27.1 3.9 15 149-163 18-32 (75)
340 cd02684 MIT_2 MIT: domain cont 71.1 7.9 0.00017 26.8 3.9 32 153-188 3-34 (75)
341 cd02680 MIT_calpain7_2 MIT: do 70.2 10 0.00023 26.2 4.3 34 247-293 2-35 (75)
342 PRK13184 pknD serine/threonine 69.4 21 0.00045 37.3 8.0 83 210-292 489-580 (932)
343 cd02677 MIT_SNX15 MIT: domain 68.7 7.9 0.00017 26.8 3.5 16 277-292 19-34 (75)
344 TIGR02561 HrpB1_HrpK type III 68.7 52 0.0011 26.2 8.3 73 75-153 20-94 (153)
345 cd02678 MIT_VPS4 MIT: domain c 68.6 18 0.00039 24.9 5.3 19 274-292 16-34 (75)
346 cd02677 MIT_SNX15 MIT: domain 68.0 8.5 0.00018 26.7 3.5 31 154-188 4-34 (75)
347 smart00745 MIT Microtubule Int 67.7 11 0.00024 26.0 4.1 19 274-292 18-36 (77)
348 KOG0890 Protein kinase of the 67.2 1.5E+02 0.0033 34.2 14.0 138 136-302 1669-1842(2382)
349 PF04910 Tcf25: Transcriptiona 65.6 1.1E+02 0.0025 28.2 16.8 154 136-305 39-234 (360)
350 PF04053 Coatomer_WDAD: Coatom 65.6 32 0.00069 32.8 8.0 93 119-221 332-427 (443)
351 cd02679 MIT_spastin MIT: domai 64.8 17 0.00037 25.5 4.5 20 273-292 17-36 (79)
352 cd02656 MIT MIT: domain contai 64.1 21 0.00045 24.5 4.9 20 274-293 16-35 (75)
353 KOG1497 COP9 signalosome, subu 63.7 60 0.0013 29.3 8.6 62 101-166 103-173 (399)
354 PF04910 Tcf25: Transcriptiona 63.4 1.3E+02 0.0027 27.9 16.0 130 89-224 30-221 (360)
355 smart00745 MIT Microtubule Int 63.0 14 0.00031 25.4 4.0 15 150-164 21-35 (77)
356 PF12854 PPR_1: PPR repeat 62.7 19 0.00041 20.4 3.8 27 263-289 6-32 (34)
357 PF04053 Coatomer_WDAD: Coatom 62.6 1.5E+02 0.0032 28.4 17.0 91 118-222 274-373 (443)
358 PHA02537 M terminase endonucle 61.2 1.1E+02 0.0023 26.4 9.7 18 118-135 96-113 (230)
359 PF12753 Nro1: Nuclear pore co 60.5 22 0.00048 32.9 5.6 52 245-296 331-394 (404)
360 cd02679 MIT_spastin MIT: domai 60.0 22 0.00047 24.9 4.4 16 149-164 20-35 (79)
361 cd02656 MIT MIT: domain contai 60.0 17 0.00037 24.9 3.9 14 174-187 20-33 (75)
362 PF10345 Cohesin_load: Cohesin 59.2 2E+02 0.0042 28.7 19.9 74 74-151 370-463 (608)
363 KOG2114 Vacuolar assembly/sort 58.5 1.8E+02 0.004 29.9 11.8 140 102-259 369-548 (933)
364 COG5187 RPN7 26S proteasome re 58.5 1.4E+02 0.003 26.8 10.4 93 191-291 114-219 (412)
365 PF05053 Menin: Menin; InterP 58.1 66 0.0014 31.4 8.5 72 93-166 269-347 (618)
366 KOG0687 26S proteasome regulat 57.5 76 0.0016 28.8 8.2 58 101-162 104-173 (393)
367 KOG0985 Vesicle coat protein c 57.0 2.7E+02 0.0059 29.7 13.9 102 107-225 1054-1162(1666)
368 PF10952 DUF2753: Protein of u 56.8 83 0.0018 24.2 7.2 73 140-224 4-78 (140)
369 PF01535 PPR: PPR repeat; Int 56.6 23 0.0005 18.7 3.4 27 268-294 4-30 (31)
370 KOG3783 Uncharacterized conser 55.7 2.1E+02 0.0045 27.9 16.1 60 231-294 452-521 (546)
371 PF04781 DUF627: Protein of un 54.5 90 0.002 23.4 8.9 90 118-223 9-105 (111)
372 PF12753 Nro1: Nuclear pore co 54.0 18 0.00039 33.5 3.9 31 121-151 334-364 (404)
373 KOG2028 ATPase related to the 52.7 81 0.0017 29.3 7.7 79 125-203 383-462 (554)
374 PF09670 Cas_Cas02710: CRISPR- 51.6 1.8E+02 0.004 27.0 10.4 65 68-134 134-198 (379)
375 PHA02537 M terminase endonucle 50.7 1.6E+02 0.0035 25.3 9.7 20 276-295 190-209 (230)
376 PF00244 14-3-3: 14-3-3 protei 49.5 1.7E+02 0.0037 25.2 14.1 47 247-293 141-198 (236)
377 KOG2114 Vacuolar assembly/sort 49.3 2.3E+02 0.0051 29.2 10.9 32 138-169 369-400 (933)
378 PF11846 DUF3366: Domain of un 49.1 60 0.0013 26.8 6.2 51 245-295 124-175 (193)
379 PF09477 Type_III_YscG: Bacter 48.9 92 0.002 23.3 6.2 79 80-167 21-99 (116)
380 COG3629 DnrI DNA-binding trans 48.5 1.1E+02 0.0023 27.3 7.8 93 197-293 121-216 (280)
381 PF07079 DUF1347: Protein of u 48.3 2.6E+02 0.0056 26.8 14.6 45 247-291 477-522 (549)
382 PRK10941 hypothetical protein; 47.8 63 0.0014 28.5 6.3 61 230-294 183-245 (269)
383 PF08311 Mad3_BUB1_I: Mad3/BUB 47.7 1.3E+02 0.0027 23.1 9.0 78 81-164 45-126 (126)
384 PF15015 NYD-SP12_N: Spermatog 47.6 2.5E+02 0.0055 26.6 10.6 32 140-171 231-262 (569)
385 TIGR00756 PPR pentatricopeptid 47.5 45 0.00097 17.9 3.9 27 268-294 4-30 (35)
386 KOG1839 Uncharacterized protei 46.6 3.8E+02 0.0082 29.2 12.4 136 136-292 972-1127(1236)
387 PF07079 DUF1347: Protein of u 46.3 86 0.0019 29.8 7.1 54 72-132 469-522 (549)
388 PF11817 Foie-gras_1: Foie gra 44.3 1.5E+02 0.0032 25.6 8.2 25 268-292 182-206 (247)
389 KOG0739 AAA+-type ATPase [Post 43.5 1.2E+02 0.0026 27.4 7.2 41 153-203 7-47 (439)
390 PF11846 DUF3366: Domain of un 43.2 90 0.002 25.7 6.4 50 119-168 125-175 (193)
391 PF11817 Foie-gras_1: Foie gra 41.9 1.1E+02 0.0024 26.4 7.0 57 103-163 180-244 (247)
392 COG4259 Uncharacterized protei 41.8 86 0.0019 23.1 5.1 29 137-165 72-100 (121)
393 PRK14700 recombination factor 40.4 2.8E+02 0.006 25.0 14.9 27 174-200 180-206 (300)
394 PF14852 Fis1_TPR_N: Fis1 N-te 38.9 34 0.00074 19.8 2.2 9 267-275 4-12 (35)
395 KOG2041 WD40 repeat protein [G 38.8 4.4E+02 0.0096 26.9 12.6 58 101-162 796-877 (1189)
396 COG5187 RPN7 26S proteasome re 37.8 2.8E+02 0.0061 24.9 8.5 68 100-171 114-189 (412)
397 PF05053 Menin: Menin; InterP 36.4 1.4E+02 0.0031 29.2 7.0 27 266-292 320-346 (618)
398 PRK10941 hypothetical protein; 36.2 2.4E+02 0.0052 24.9 8.2 62 103-168 183-246 (269)
399 KOG1538 Uncharacterized conser 36.0 4.8E+02 0.01 26.4 15.2 169 106-292 637-832 (1081)
400 COG3629 DnrI DNA-binding trans 35.8 3.2E+02 0.0069 24.3 12.8 96 104-224 119-215 (280)
401 KOG4521 Nuclear pore complex, 35.8 6.1E+02 0.013 27.6 15.2 186 100-301 919-1140(1480)
402 KOG1839 Uncharacterized protei 35.8 6E+02 0.013 27.8 11.9 134 69-224 936-1085(1236)
403 KOG2581 26S proteasome regulat 33.6 1.5E+02 0.0032 27.9 6.5 62 105-170 213-280 (493)
404 PF09613 HrpB1_HrpK: Bacterial 32.5 2.7E+02 0.0058 22.5 13.5 50 187-240 39-90 (160)
405 PF08311 Mad3_BUB1_I: Mad3/BUB 31.8 2.2E+02 0.0047 21.8 6.4 46 83-132 81-126 (126)
406 PF13812 PPR_3: Pentatricopept 31.5 90 0.002 16.7 4.1 28 267-294 4-31 (34)
407 KOG0276 Vesicle coat complex C 31.3 1.6E+02 0.0035 29.2 6.6 73 76-159 648-730 (794)
408 PF10579 Rapsyn_N: Rapsyn N-te 31.3 1.9E+02 0.0041 20.3 7.4 47 245-291 19-70 (80)
409 PF09127 Leuk-A4-hydro_C: Leuk 31.3 2.6E+02 0.0056 21.9 11.6 90 100-198 50-139 (143)
410 PF07064 RIC1: RIC1; InterPro 31.1 3.4E+02 0.0074 23.8 8.2 61 215-275 182-247 (258)
411 KOG1463 26S proteasome regulat 30.6 4.3E+02 0.0094 24.3 13.1 113 209-322 222-344 (411)
412 KOG4521 Nuclear pore complex, 29.7 7.7E+02 0.017 26.9 13.1 67 190-261 918-992 (1480)
413 KOG2028 ATPase related to the 29.4 4.8E+02 0.01 24.5 10.5 30 247-276 434-463 (554)
414 TIGR00823 EIIA-LAC phosphotran 26.6 1.5E+02 0.0033 21.7 4.5 36 129-164 9-44 (99)
415 KOG1310 WD40 repeat protein [G 26.2 3.9E+02 0.0085 26.2 8.0 90 75-168 384-476 (758)
416 PF12583 TPPII_N: Tripeptidyl 25.9 89 0.0019 24.2 3.2 24 308-331 86-109 (139)
417 cd00215 PTS_IIA_lac PTS_IIA, P 25.5 1.7E+02 0.0038 21.3 4.6 36 129-164 7-42 (97)
418 PF10255 Paf67: RNA polymerase 25.5 1E+02 0.0023 28.9 4.2 67 99-165 112-192 (404)
419 COG1447 CelC Phosphotransferas 25.1 2.5E+02 0.0055 20.8 5.3 35 130-164 12-46 (105)
420 KOG1497 COP9 signalosome, subu 24.5 5.5E+02 0.012 23.5 10.4 119 118-255 76-207 (399)
421 PF07219 HemY_N: HemY protein 24.4 2.9E+02 0.0063 20.3 6.0 36 267-302 62-97 (108)
422 COG1747 Uncharacterized N-term 24.2 6.9E+02 0.015 24.6 15.1 135 85-231 86-240 (711)
423 KOG0276 Vesicle coat complex C 24.1 5.2E+02 0.011 25.9 8.5 33 188-224 662-694 (794)
424 PF13041 PPR_2: PPR repeat fam 23.9 1.8E+02 0.0038 17.6 6.3 30 102-135 4-33 (50)
425 PF02255 PTS_IIA: PTS system, 23.5 1.3E+02 0.0029 21.8 3.7 36 129-164 6-41 (96)
426 KOG1538 Uncharacterized conser 23.2 7.8E+02 0.017 25.0 9.5 11 147-157 713-723 (1081)
427 PRK09591 celC cellobiose phosp 23.2 1.8E+02 0.0039 21.5 4.3 34 130-163 13-46 (104)
428 PF15297 CKAP2_C: Cytoskeleton 22.4 2.7E+02 0.0059 25.5 6.1 63 69-135 106-170 (353)
429 PF10345 Cohesin_load: Cohesin 22.4 7.8E+02 0.017 24.5 20.0 182 121-325 37-252 (608)
430 COG4259 Uncharacterized protei 22.3 2.7E+02 0.0059 20.6 4.9 50 248-297 53-105 (121)
431 KOG2581 26S proteasome regulat 22.2 6.8E+02 0.015 23.7 9.3 106 186-295 163-278 (493)
432 PF08969 USP8_dimer: USP8 dime 21.8 1.8E+02 0.0038 21.7 4.2 29 265-293 39-67 (115)
433 PF10366 Vps39_1: Vacuolar sor 21.7 2.6E+02 0.0057 20.7 5.1 25 141-165 43-67 (108)
434 smart00386 HAT HAT (Half-A-TPR 21.5 1.4E+02 0.003 15.5 3.6 15 279-293 2-16 (33)
435 PRK10454 PTS system N,N'-diace 21.0 2.3E+02 0.005 21.4 4.6 35 130-164 24-58 (115)
436 COG1447 CelC Phosphotransferas 21.0 3.5E+02 0.0075 20.1 5.3 36 257-292 12-47 (105)
437 TIGR00823 EIIA-LAC phosphotran 21.0 2.5E+02 0.0054 20.5 4.7 36 257-292 10-45 (99)
438 PRK11619 lytic murein transgly 20.9 8.8E+02 0.019 24.5 22.0 104 118-225 254-375 (644)
439 KOG2422 Uncharacterized conser 20.7 8.5E+02 0.018 24.3 13.3 92 71-166 348-448 (665)
440 COG5159 RPN6 26S proteasome re 20.5 6.4E+02 0.014 22.8 17.1 107 209-319 138-267 (421)
441 KOG1463 26S proteasome regulat 20.3 6.9E+02 0.015 23.1 10.4 46 226-274 283-328 (411)
442 KOG2396 HAT (Half-A-TPR) repea 20.1 5.7E+02 0.012 24.9 7.8 91 212-306 87-182 (568)
443 cd00215 PTS_IIA_lac PTS_IIA, P 20.1 2.7E+02 0.0058 20.3 4.6 34 259-292 10-43 (97)
444 PRK00971 glutaminase; Provisio 20.1 5.6E+02 0.012 23.1 7.6 82 119-205 132-214 (307)
No 1
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=99.92 E-value=9.3e-23 Score=182.76 Aligned_cols=207 Identities=28% Similarity=0.370 Sum_probs=185.7
Q ss_pred cCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHH
Q 020091 76 FTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEA 155 (331)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~ 155 (331)
...+++..+ ..+...++..+++.+++.+|.+|..|.||.+|..+|+.||+++++.|++.++++||.+|..+.
T Consensus 52 ~~~~~~~~a----~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~---- 123 (292)
T COG0790 52 AYPPDYAKA----LKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGR---- 123 (292)
T ss_pred cccccHHHH----HHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCC----
Confidence 345666677 566667777788999999999999999999999999999999999999999999999998873
Q ss_pred HHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHH---HHHHHHHHhcC---CCCCCCHHHHHHHHHHHHHCCCHH
Q 020091 156 AISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRA---QYQLALCLHRG---RGVDFNLQEAARWYLRAAEGGYVR 229 (331)
Q Consensus 156 A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a---~~~lg~~y~~G---~g~~~d~~~A~~~~~~A~~~~~~~ 229 (331)
++.+|+.+|..||++|++.|++.+ ++.||.+|..| .++..+...|+.+|.+|++.++..
T Consensus 124 ---------------gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~ 188 (292)
T COG0790 124 ---------------GVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPD 188 (292)
T ss_pred ---------------CcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHH
Confidence 256688999999999999999999 99999999999 788888889999999999999999
Q ss_pred HHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC---------------CHHHHHHHHHHHHHcC
Q 020091 230 AMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEG---------------EMMKAVVYLELATRAG 294 (331)
Q Consensus 230 a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~---------------~~~~A~~~~~~A~~~~ 294 (331)
+++.||.+|..|.|+++|..+|+.||.+|++.|+..+++.++ +++..| +...|..++.+++..+
T Consensus 189 a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 189 AQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999 566544 8999999999999999
Q ss_pred CHHHHHHHHHHH
Q 020091 295 ETAADHVKNVIL 306 (331)
Q Consensus 295 ~~~a~~~l~~~~ 306 (331)
...++..+..+.
T Consensus 268 ~~~~~~~~~~~~ 279 (292)
T COG0790 268 FDNACEALRALK 279 (292)
T ss_pred ChhHHHHHHHHH
Confidence 988887766433
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=5.5e-23 Score=189.11 Aligned_cols=237 Identities=19% Similarity=0.130 Sum_probs=145.7
Q ss_pred CchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHH
Q 020091 78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEA 155 (331)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~ 155 (331)
.|.+.+|...|.+.++..+ .-+.++.+||-++.. .|+...|+++|++|+..+ .++|++|||++|.+.+.+++
T Consensus 197 ~Grl~ea~~cYlkAi~~qp--~fAiawsnLg~~f~~----~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 197 EGRLEEAKACYLKAIETQP--CFAIAWSNLGCVFNA----QGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred hcccchhHHHHHHHHhhCC--ceeeeehhcchHHhh----cchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchH
Confidence 4666666666666555544 346666667766666 667777777777776664 66677777777766666667
Q ss_pred HHHHHHHHHHcCCCCC---------------------------------------------CccCHHHHHHHHHHHHHC-
Q 020091 156 AISLYRQAAVLGDPAA---------------------------------------------QPANAEEAVKLLYQASIA- 189 (331)
Q Consensus 156 A~~~~~~a~~~~~~~~---------------------------------------------~~~~~~~A~~~~~~a~~~- 189 (331)
|+..|++|+.+.+..+ ..++..+|+.+|.+++..
T Consensus 271 Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 271 AVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred HHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 7766666666655444 345555555555555443
Q ss_pred -CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC--CH
Q 020091 190 -GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HG 264 (331)
Q Consensus 190 -~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~ 264 (331)
.++++++|||.+|.+ .+.+++|..+|++|++- +.+.+..+||.+|.+ .| ++++|+.+|+.|+... ..
T Consensus 351 p~hadam~NLgni~~E----~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kq-qg---nl~~Ai~~YkealrI~P~fA 422 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYRE----QGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQ-QG---NLDDAIMCYKEALRIKPTFA 422 (966)
T ss_pred CccHHHHHHHHHHHHH----hccchHHHHHHHHHHhhChhhhhhhhhHHHHHHh-cc---cHHHHHHHHHHHHhcCchHH
Confidence 455555555555554 44555555555555543 445555566666533 22 6666666666666653 35
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 265 KAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 265 ~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~--~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
+++.++|..|..+|+.+.|++.|.+|+..++ .+|..||+.++. ..+++.+|+.-+++.+.+-|+
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k--DsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYK--DSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh--ccCCcHHHHHHHHHHHccCCC
Confidence 6666777777667777777777777766654 445555555543 566777777777776666553
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=1.2e-22 Score=186.80 Aligned_cols=247 Identities=20% Similarity=0.090 Sum_probs=211.5
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGL 145 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~ 145 (331)
.+..+..+..+|+...|...|...++..|+ ...+...+|.+... .|+.++|...|.+|++.. .+.++.+||-
T Consensus 153 ~inla~al~~~~~~~~a~~~~~~alqlnP~--l~ca~s~lgnLlka----~Grl~ea~~cYlkAi~~qp~fAiawsnLg~ 226 (966)
T KOG4626|consen 153 YINLAAALVTQGDLELAVQCFFEALQLNPD--LYCARSDLGNLLKA----EGRLEEAKACYLKAIETQPCFAIAWSNLGC 226 (966)
T ss_pred HhhHHHHHHhcCCCcccHHHHHHHHhcCcc--hhhhhcchhHHHHh----hcccchhHHHHHHHHhhCCceeeeehhcch
Confidence 355566677889999999999999988765 56778889999998 899999999999999874 8889999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCH
Q 020091 146 MYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNL 212 (331)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~ 212 (331)
.+...|+...|++.|++|+.+++... ....++.|+.+|.+|+.. +++.++.|||-+|.+ +++.
T Consensus 227 ~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYye----qG~l 302 (966)
T KOG4626|consen 227 VFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYE----QGLL 302 (966)
T ss_pred HHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEec----cccH
Confidence 99999999999999999999988776 678899999999999865 788999999998887 7889
Q ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHH
Q 020091 213 QEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLE 288 (331)
Q Consensus 213 ~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~ 288 (331)
+-|+..|++|++. ..+.|+.+||..+.. .| +..+|..+|.+|... .+++++++||.+|.++|.+++|..+|+
T Consensus 303 dlAI~~Ykral~~~P~F~~Ay~NlanALkd-~G---~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~ 378 (966)
T KOG4626|consen 303 DLAIDTYKRALELQPNFPDAYNNLANALKD-KG---SVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYL 378 (966)
T ss_pred HHHHHHHHHHHhcCCCchHHHhHHHHHHHh-cc---chHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHH
Confidence 9999999999875 678899999999844 44 889999999999877 678999999999999999999999999
Q ss_pred HHHHcC--CHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 289 LATRAG--ETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 289 ~A~~~~--~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
+|++.. -..++.||+.++.+ ++++++|...+++.++..|.
T Consensus 379 ~al~v~p~~aaa~nNLa~i~kq--qgnl~~Ai~~YkealrI~P~ 420 (966)
T KOG4626|consen 379 KALEVFPEFAAAHNNLASIYKQ--QGNLDDAIMCYKEALRIKPT 420 (966)
T ss_pred HHHhhChhhhhhhhhHHHHHHh--cccHHHHHHHHHHHHhcCch
Confidence 998874 46677888888864 56778888888888877764
No 4
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=9.2e-22 Score=189.69 Aligned_cols=237 Identities=27% Similarity=0.315 Sum_probs=209.0
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHhcC-CCCCCCHHHHHHHHHHHHh-------CCCHHHHHHHHHHHhcCC-----CHHH
Q 020091 89 KSWNDALRPLREAMVLLRWGKRFKHG-RGVRKNLDKALDSFLKGAA-------RGSTLAMVDAGLMYWEMD-----KKEA 155 (331)
Q Consensus 89 ~~~~~~~~~~~~~~a~~~LG~~y~~g-~g~~~~~~~A~~~~~~A~~-------~~~~~a~~~lg~~~~~~~-----~~~~ 155 (331)
.++++.+++.++..+++.+|.+|..| .|+.+|.++|+.||+.|+. +|++.+++.||.+|.++. |.+.
T Consensus 232 ~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~ 311 (552)
T KOG1550|consen 232 FKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEK 311 (552)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHH
Confidence 78899999999999999999999999 7999999999999999998 899999999999999973 7899
Q ss_pred HHHHHHHHHHcCCCCC-----------C-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 020091 156 AISLYRQAAVLGDPAA-----------Q-PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAA 223 (331)
Q Consensus 156 A~~~~~~a~~~~~~~~-----------~-~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~ 223 (331)
|+.+|.++++.+++.+ . .+|..+|..||..|++.|+..|+++++.||..|.|++.|..+|+.||++|+
T Consensus 312 A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA 391 (552)
T KOG1550|consen 312 ALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAA 391 (552)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHH
Confidence 9999999999999998 3 478999999999999999999999999999999999999999999999999
Q ss_pred HCCCHHHHHHHHHHHhcCCC---------------------------------------ccccHHHHHHHHHHHHHcCCH
Q 020091 224 EGGYVRAMYNTSLCYSFGEG---------------------------------------LPLSHRQARKWMKRAADCGHG 264 (331)
Q Consensus 224 ~~~~~~a~~~lg~~y~~g~g---------------------------------------~~~~~~~A~~~~~~a~~~~~~ 264 (331)
+.|.+.|++.++.++..|.+ +..+...+...+.++...|+.
T Consensus 392 ~~g~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 471 (552)
T KOG1550|consen 392 EKGNPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNA 471 (552)
T ss_pred HccChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCH
Confidence 99999999999988866632 223556777777777778888
Q ss_pred HHHHHHHHHHhcc----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhc-HHHHHHHHHhhhc
Q 020091 265 KAQLEHGLGLFTE----GEMMKAVVYLELATRAGETAADHVKNVILQQLSATS-RDRAMLVVDSWRA 326 (331)
Q Consensus 265 ~a~~~Lg~~~~~~----~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~-~~~a~~~~~~~~~ 326 (331)
.+...||.+|+.- .+++.|..+|.+|.+.+ ..+.++++.++++...-+ +..|+..+++..+
T Consensus 472 ~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~-~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 472 DAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG-AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred HHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh-hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 9999999988764 48999999999999999 999999999998765443 5566666666544
No 5
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=99.85 E-value=4.5e-19 Score=158.91 Aligned_cols=186 Identities=27% Similarity=0.317 Sum_probs=165.3
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHH
Q 020091 105 LRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLY 184 (331)
Q Consensus 105 ~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~ 184 (331)
...+.....+.....++..|..+|.+++..+++.++..++.+|..+ ..+.+|..+|+.||+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g-------------------~gv~~~~~~A~~~~~ 101 (292)
T COG0790 41 LKSALLNGAGSAYPPDYAKALKSYEKAAELGDAAALALLGQMYGAG-------------------KGVSRDKTKAADWYR 101 (292)
T ss_pred HhhcccccccccccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhc-------------------cCccccHHHHHHHHH
Confidence 3334444444456899999999999999999999999999999886 336777888889999
Q ss_pred HHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHH---HHHHHHHHhcC---CCccccHHHHHHHHHHH
Q 020091 185 QASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRA---MYNTSLCYSFG---EGLPLSHRQARKWMKRA 258 (331)
Q Consensus 185 ~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a---~~~lg~~y~~g---~g~~~~~~~A~~~~~~a 258 (331)
.+++.|++.++++||.+|..|.|+.+|..+|..||++|++.|+..+ ++.+|.+|..| .++..+..+|+.||.++
T Consensus 102 ~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~a 181 (292)
T COG0790 102 CAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKA 181 (292)
T ss_pred HHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999 99999999999 78888889999999999
Q ss_pred HHcCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 020091 259 ADCGHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAGETAADHVKNVILQQL 309 (331)
Q Consensus 259 ~~~~~~~a~~~Lg~~~~~----~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l 309 (331)
+..+++.+++.||.+|.. ..|+++|+.||.+|++.|+..++++++.++...
T Consensus 182 a~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~~~a~~~~~~~~~~g 236 (292)
T COG0790 182 AELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYNLGLMYLNG 236 (292)
T ss_pred HHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC
Confidence 999999999999998866 449999999999999999999999999555433
No 6
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=1.8e-19 Score=173.87 Aligned_cols=228 Identities=25% Similarity=0.302 Sum_probs=198.9
Q ss_pred HHHhHHHHHH-HHHHhCCCCCHHHHHHHH------HHHhcCCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHhc
Q 020091 81 LRAASLVCKS-WNDALRPLREAMVLLRWG------KRFKHGRGVRKN----LDKALDSFLKGAARGSTLAMVDAGLMYWE 149 (331)
Q Consensus 81 ~~~a~~~~~~-~~~~~~~~~~~~a~~~LG------~~y~~g~g~~~~----~~~A~~~~~~A~~~~~~~a~~~lg~~~~~ 149 (331)
+......... .+...+......+.+.+| .++..|.|...+ ...|+.||+.+++.|+..+++.+|.||..
T Consensus 177 v~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~ 256 (552)
T KOG1550|consen 177 VRRSEEKALSKHYNKAASSTSSDATFSLGPNAQRLQLSLEGEGNERNESGELSEAFKYYREAAKLGHSEAQYALGICYLA 256 (552)
T ss_pred ccchhhHhhhhhhhhccCccccccccCCCcchhhhhccccccCcccccchhhhHHHHHHHHHHhhcchHHHHHHHHHHhh
Confidence 4333333344 667777777777777777 788888887777 68899999999999999999999999999
Q ss_pred C-----CCHHHHHHHHHHHHH-------cCCCCC-------------Ccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Q 020091 150 M-----DKKEAAISLYRQAAV-------LGDPAA-------------QPA-NAEEAVKLLYQASIAGHVRAQYQLALCLH 203 (331)
Q Consensus 150 ~-----~~~~~A~~~~~~a~~-------~~~~~~-------------~~~-~~~~A~~~~~~a~~~~~~~a~~~lg~~y~ 203 (331)
+ +|.+.|+.||+.++. .+.+.+ ... |+++|+.+|.++++.|++++++.||.+|.
T Consensus 257 G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 257 GTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYE 336 (552)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 8 699999999999988 664444 445 99999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-cCCHHH
Q 020091 204 RGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT-EGEMMK 282 (331)
Q Consensus 204 ~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~-~~~~~~ 282 (331)
.|. ..+|+.+|.+||..|+..|+..|++.++.||..|.|++++...|+.||+++++.|++.+++.++.++.. .+.+..
T Consensus 337 ~g~-~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~~~~~~ 415 (552)
T KOG1550|consen 337 TGT-KERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGVGRYDT 415 (552)
T ss_pred cCC-ccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHccccccH
Confidence 986 458999999999999999999999999999999999999999999999999999999999999887755 389999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 020091 283 AVVYLELATRAGETAADHVKNVILQQL 309 (331)
Q Consensus 283 A~~~~~~A~~~~~~~a~~~l~~~~~~l 309 (331)
+...+...++.++..++.+...+....
T Consensus 416 ~~~~~~~~a~~g~~~~q~~a~~l~~~~ 442 (552)
T KOG1550|consen 416 ALALYLYLAELGYEVAQSNAAYLLDQS 442 (552)
T ss_pred HHHHHHHHHHhhhhHHhhHHHHHHHhc
Confidence 999999999999998888888877665
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=2.2e-17 Score=162.69 Aligned_cols=246 Identities=10% Similarity=-0.040 Sum_probs=190.7
Q ss_pred HHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHH
Q 020091 70 NKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMY 147 (331)
Q Consensus 70 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~ 147 (331)
......+..|++.+|+..|.+.++..+ ++..++++|.+|.. .+++++|++.+.+|++.+ ++.+++.+|.+|
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p---~~~~~~n~a~~~~~----l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECKP---DPVYYSNRAACHNA----LGDWEKVVEDTTAALELDPDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCC---chHHHHHHHHHHHH----hCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 344567888999999999988887655 47889999999999 899999999999999875 889999999999
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCC--------------------------------------------------------
Q 020091 148 WEMDKKEAAISLYRQAAVLGDPAA-------------------------------------------------------- 171 (331)
Q Consensus 148 ~~~~~~~~A~~~~~~a~~~~~~~~-------------------------------------------------------- 171 (331)
...|++++|+..|..+...++...
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 999999999987765543211000
Q ss_pred ---------------------CccCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 172 ---------------------QPANAEEAVKLLYQASIAG-----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 172 ---------------------~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
..+++++|+.+|+++++.+ .+.+++.+|.+|.. .+++++|+.+|+++++.
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~----~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCL----KGKHLEALADLSKSIEL 360 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHc
Confidence 1146888999999988643 56678889998876 78899999999999875
Q ss_pred --CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHH
Q 020091 226 --GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHV 301 (331)
Q Consensus 226 --~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~ 301 (331)
++..++..+|.++.. .+++++|+.+|+++++. .++.+++.+|.+++..|++++|+.+|+++++.++......
T Consensus 361 ~P~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~ 436 (615)
T TIGR00990 361 DPRVTQSYIKRASMNLE----LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSH 436 (615)
T ss_pred CCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHH
Confidence 567788888888865 34888888888888776 4678888888888888888888888888888765443333
Q ss_pred HHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 302 KNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 302 l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
+.........++.++|...+++.++..|.
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~~P~ 465 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKNFPE 465 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 33444445566777888888887766654
No 8
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=4.7e-17 Score=160.67 Aligned_cols=243 Identities=15% Similarity=0.013 Sum_probs=154.1
Q ss_pred hccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCC
Q 020091 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMD 151 (331)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~ 151 (331)
..+..|++++|...+.++.+..|+ ++.++..+|.++.. .+++++|+..|++++.. +++.++..+|.++...|
T Consensus 85 ~~l~~g~~~~A~~~l~~~l~~~P~--~~~a~~~la~~l~~----~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g 158 (656)
T PRK15174 85 SPLASSQPDAVLQVVNKLLAVNVC--QPEDVLLVASVLLK----SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMD 158 (656)
T ss_pred hHhhcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence 344567777777777777766554 56677777777777 67777777777777765 36667777777777777
Q ss_pred CHHHHHHHHHHHHHcCCCCC---------------------------------------------CccCHHHHHHHHHHH
Q 020091 152 KKEAAISLYRQAAVLGDPAA---------------------------------------------QPANAEEAVKLLYQA 186 (331)
Q Consensus 152 ~~~~A~~~~~~a~~~~~~~~---------------------------------------------~~~~~~~A~~~~~~a 186 (331)
++++|+..|++++...+... ..+++++|+..|+++
T Consensus 159 ~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~a 238 (656)
T PRK15174 159 KELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESA 238 (656)
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 77777777666654433222 234555555555555
Q ss_pred HHC--CCHHHHHHHHHHHhcCCCCCCCHHH----HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHH
Q 020091 187 SIA--GHVRAQYQLALCLHRGRGVDFNLQE----AARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRA 258 (331)
Q Consensus 187 ~~~--~~~~a~~~lg~~y~~G~g~~~d~~~----A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 258 (331)
+.. +++.++++||.+|.. .+++++ |+.+|+++++. +++.++..+|.++.. .+++++|+.+|+++
T Consensus 239 l~~~p~~~~~~~~Lg~~l~~----~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~g~~~eA~~~l~~a 310 (656)
T PRK15174 239 LARGLDGAALRRSLGLAYYQ----SGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR----TGQNEKAIPLLQQS 310 (656)
T ss_pred HhcCCCCHHHHHHHHHHHHH----cCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHH
Confidence 443 456666667766654 444543 67777777654 556667777777754 33777777777777
Q ss_pred HHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 259 ADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 259 ~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
... .++.++.+||.++...|++++|+..|+++++.++..+...+.........++.++|...++++++..|.
T Consensus 311 l~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 311 LATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 665 445666777777777777777777777777665544333322222334556667777777777666654
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=1.2e-16 Score=157.49 Aligned_cols=240 Identities=13% Similarity=0.029 Sum_probs=182.7
Q ss_pred CchHHHhHHHHHHHHHHhC-CCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHH
Q 020091 78 LPQLRAASLVCKSWNDALR-PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKE 154 (331)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~-~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~ 154 (331)
.+.+.+|...+...++... ....+.+++.+|.++.. .+++++|+.+|++++... ++.+++.+|.++...|+++
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~----~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~ 382 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCL----KGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPD 382 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHH
Confidence 3567788777776665431 23467788899999988 899999999999998764 6788899999999999999
Q ss_pred HHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 020091 155 AAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLR 221 (331)
Q Consensus 155 ~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~ 221 (331)
+|+..|+++++.++... ..+++++|+.+|+++++. ++..++.++|.++.. .+++++|+..|++
T Consensus 383 eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~----~g~~~eA~~~~~~ 458 (615)
T TIGR00990 383 KAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK----EGSIASSMATFRR 458 (615)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH----CCCHHHHHHHHHH
Confidence 99999999998876655 678899999999998765 578888899998876 7889999999999
Q ss_pred HHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC--HH------HHHHHHHHH-hccCCHHHHHHHHHHH
Q 020091 222 AAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GK------AQLEHGLGL-FTEGEMMKAVVYLELA 290 (331)
Q Consensus 222 A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~------a~~~Lg~~~-~~~~~~~~A~~~~~~A 290 (331)
++.. .++.+++.+|.+|.. .+++++|+..|++|+.... .. .....+..+ ...|++++|+.+|+++
T Consensus 459 al~~~P~~~~~~~~lg~~~~~----~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kA 534 (615)
T TIGR00990 459 CKKNFPEAPDVYNYYGELLLD----QNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKA 534 (615)
T ss_pred HHHhCCCChHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 8765 668888899999865 4489999999999887632 11 122333333 3368999999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCC
Q 020091 291 TRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 329 (331)
Q Consensus 291 ~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~ 329 (331)
+..++.........+...+..++.++|+..+++..+..+
T Consensus 535 l~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 535 LIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred HhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 887654444444444455667778888888888765544
No 10
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=2.4e-16 Score=155.62 Aligned_cols=251 Identities=13% Similarity=-0.013 Sum_probs=191.5
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGL 145 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~ 145 (331)
++.-+..++..|++.+|..++...+...++ ++.+++.||.+... .+++++|+..|++++.. +++.++..+|.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~--~~~~l~~l~~~~l~----~g~~~~A~~~l~~~l~~~P~~~~a~~~la~ 118 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN--GRDLLRRWVISPLA----SSQPDAVLQVVNKLLAVNVCQPEDVLLVAS 118 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC--chhHHHHHhhhHhh----cCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 444556678999999999999888887765 78999999999988 89999999999999887 48999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCC------
Q 020091 146 MYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGR------ 206 (331)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~------ 206 (331)
++...|++++|+..|++++...+... ..+++++|+..+++++. ++++.++..++..+..|.
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~ 198 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHD 198 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999877665 78899999999987654 355555554433222111
Q ss_pred ------------------------CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHH----HHHHHHH
Q 020091 207 ------------------------GVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHR----QARKWMK 256 (331)
Q Consensus 207 ------------------------g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~----~A~~~~~ 256 (331)
-..+++++|+..|+++++. +++.+++++|.+|... | +++ +|..+|+
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~-G---~~~eA~~~A~~~~~ 274 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQS-G---RSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-C---CchhhHHHHHHHHH
Confidence 0045666677777776654 5677778888888652 2 444 4788888
Q ss_pred HHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 257 RAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 257 ~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~--~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
+++.. ++..++..+|.++...|++++|+.+|+++++..+ ..+..+++.++ ...++.++|...++++.+..|.
T Consensus 275 ~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l--~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 275 HALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL--RQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHhCcc
Confidence 88776 5567888888888888888888888888887754 44444554444 4466778888888888777665
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.76 E-value=6.3e-16 Score=143.93 Aligned_cols=244 Identities=15% Similarity=0.020 Sum_probs=156.9
Q ss_pred HHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCC------HHHHHHHHH
Q 020091 72 IAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS------TLAMVDAGL 145 (331)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~------~~a~~~lg~ 145 (331)
+...+..|++++|...+.+..+..+ .++.+++.+|.+|.. .+++++|+..+++++.... ..++..||.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDP--ETVELHLALGNLFRR----RGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ 115 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHH----cCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 3444566777777777776666543 356777778877777 7788888888777776532 245677777
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHhcCCC
Q 020091 146 MYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIAGH-------VRAQYQLALCLHRGRG 207 (331)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~~~-------~~a~~~lg~~y~~G~g 207 (331)
+|...|++++|+.+|.++.+..+... ..+++++|+.+++++++.+. ...+..+|.++..
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--- 192 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA--- 192 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh---
Confidence 77777788888888877776544322 56777777777777665421 1234456666654
Q ss_pred CCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCHHH
Q 020091 208 VDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH---GKAQLEHGLGLFTEGEMMK 282 (331)
Q Consensus 208 ~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~~~~~~~~~~ 282 (331)
.+++++|+.+|+++++. ++..+++.+|.+|.. .+++++|..+|+++...+. ..++..|+.+|...|++++
T Consensus 193 -~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 267 (389)
T PRK11788 193 -RGDLDAARALLKKALAADPQCVRASILLGDLALA----QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE 267 (389)
T ss_pred -CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence 56777777777777654 456667777777755 3377777777777766532 2345667777777777777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 283 AVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 283 A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
|+.+++++.+..+..... ...+......++.++|...+++..+..|+
T Consensus 268 A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~ 314 (389)
T PRK11788 268 GLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPS 314 (389)
T ss_pred HHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcC
Confidence 777777776654322211 22333334455666777777766665554
No 12
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.74 E-value=3.1e-15 Score=152.34 Aligned_cols=239 Identities=20% Similarity=0.142 Sum_probs=161.5
Q ss_pred HHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--C-------------
Q 020091 72 IAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S------------- 136 (331)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~------------- 136 (331)
+......|++++|...+....+..+ .++.+++.+|.+|.. .+++++|+.+|+++.... +
T Consensus 608 ~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 681 (899)
T TIGR02917 608 GRAQLAAGDLNKAVSSFKKLLALQP--DSALALLLLADAYAV----MKNYAKAITSLKRALELKPDNTEAQIGLAQLLLA 681 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3334556777777776666665543 356677777777777 677777777777776542 3
Q ss_pred ---------------------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC----------CccCHHHHHHHHHH
Q 020091 137 ---------------------TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA----------QPANAEEAVKLLYQ 185 (331)
Q Consensus 137 ---------------------~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~----------~~~~~~~A~~~~~~ 185 (331)
+..+..+|.++...|++++|+.+|++++...+... ..+++++|+..+++
T Consensus 682 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 761 (899)
T TIGR02917 682 AKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEA 761 (899)
T ss_pred cCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34445555666666666666666666666544333 45667777777777
Q ss_pred HHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc
Q 020091 186 ASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 261 (331)
Q Consensus 186 a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 261 (331)
+++ ++++.+++.+|.+|.. .+++++|+.+|+++++. +++.++.++|++|.. .++ .+|+.+++++...
T Consensus 762 ~l~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 762 WLKTHPNDAVLRTALAELYLA----QKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLE----LKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHhCCCCHHHHHHHHHHHHH----CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCc-HHHHHHHHHHHhh
Confidence 654 3567777788887775 67788888888887765 566777788888755 225 6688888888765
Q ss_pred --CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhh
Q 020091 262 --GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWR 325 (331)
Q Consensus 262 --~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~ 325 (331)
+++..+..+|.++...|++++|+.+|+++++.++.+.......+......++.++|.+++++++
T Consensus 833 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 833 APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5566777888888888888888888888887765444444444444556677778888877764
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.73 E-value=3.1e-15 Score=151.82 Aligned_cols=236 Identities=14% Similarity=-0.047 Sum_probs=194.2
Q ss_pred CchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhcCCCHHHH
Q 020091 78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMVDAGLMYWEMDKKEAA 156 (331)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~~~~~~~~~~A 156 (331)
.++..+|+..+.+.....++ ......+|.++.. .+++++|+.+|+++.... ...+++.+|.++...|+.++|
T Consensus 489 ~~~~~eAi~a~~~Al~~~Pd---~~~~L~lA~al~~----~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA 561 (987)
T PRK09782 489 DTLPGVALYAWLQAEQRQPD---AWQHRAVAYQAYQ----VEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAAR 561 (987)
T ss_pred hCCcHHHHHHHHHHHHhCCc---hHHHHHHHHHHHH----CCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHH
Confidence 36777888877777777654 3345666777777 799999999999987653 556788999999999999999
Q ss_pred HHHHHHHHHcCCCCC--------C---ccCHHHHHHHHHHHHHCC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 157 ISLYRQAAVLGDPAA--------Q---PANAEEAVKLLYQASIAG-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 157 ~~~~~~a~~~~~~~~--------~---~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
+.+|++++...+... . .+++++|+.+|+++++.. ++.+++++|.++.. .+++++|+.+|+++++
T Consensus 562 ~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~----lG~~deA~~~l~~AL~ 637 (987)
T PRK09782 562 DRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQ----RHNVPAAVSDLRAALE 637 (987)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHH
Confidence 999999999875554 2 389999999999998742 48899999999987 8899999999999987
Q ss_pred C--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHH
Q 020091 225 G--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADH 300 (331)
Q Consensus 225 ~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~ 300 (331)
. +++.++.++|.++.. .+++++|+..|+++++. +++.++++||.++...|++++|+.+|++|++..+..+..
T Consensus 638 l~Pd~~~a~~nLG~aL~~----~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i 713 (987)
T PRK09782 638 LEPNNSNYQAALGYALWD----SGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALI 713 (987)
T ss_pred hCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchh
Confidence 5 788999999999966 44999999999999887 678999999999999999999999999999998877666
Q ss_pred HHHHHHhhhchhcHHHHHHHHHhhhcCC
Q 020091 301 VKNVILQQLSATSRDRAMLVVDSWRAMP 328 (331)
Q Consensus 301 ~l~~~~~~l~~~~~~~a~~~~~~~~~~~ 328 (331)
..........+.+++++++.+++--...
T Consensus 714 ~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 714 TPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 6666655666777778887666643333
No 14
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.73 E-value=1.8e-15 Score=154.18 Aligned_cols=251 Identities=16% Similarity=0.061 Sum_probs=145.8
Q ss_pred hHHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHH
Q 020091 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVD 142 (331)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~ 142 (331)
+...+..+...+..|++++|...+.+.++..++ ++.+++.+|.+|.. .+++++|..+|+++++.+ +..+...
T Consensus 22 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 95 (899)
T TIGR02917 22 PESLIEAAKSYLQKNKYKAAIIQLKNALQKDPN--DAEARFLLGKIYLA----LGDYAAAEKELRKALSLGYPKNQVLPL 95 (899)
T ss_pred HHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCChhhhHHH
Confidence 345677778888999999999999998887665 78999999999999 899999999999998764 3333444
Q ss_pred -----------------------------------HHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCH
Q 020091 143 -----------------------------------AGLMYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANA 176 (331)
Q Consensus 143 -----------------------------------lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~ 176 (331)
+|.++...|++++|+.+|+++++..+... ..+++
T Consensus 96 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~ 175 (899)
T TIGR02917 96 LARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRF 175 (899)
T ss_pred HHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCH
Confidence 44444445555555555555554443332 34455
Q ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHH
Q 020091 177 EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQAR 252 (331)
Q Consensus 177 ~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~ 252 (331)
++|+.+++++++. .++.+++.+|.++.. .+++++|+.+|+++++. ++..++..++.++.. .+++++|.
T Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~----~g~~~~A~ 247 (899)
T TIGR02917 176 DEARALIDEVLTADPGNVDALLLKGDLLLS----LGNIELALAAYRKAIALRPNNPAVLLALATILIE----AGEFEEAE 247 (899)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHH
Confidence 5555555554432 344555555555543 44555555555555443 344455555555543 22555555
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCC
Q 020091 253 KWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 329 (331)
Q Consensus 253 ~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~ 329 (331)
..+.++... .++.+.+..|.+++..|++++|+..|+++++.++......+.........++.++|...+++..+..|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 326 (899)
T TIGR02917 248 KHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAP 326 (899)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 555555443 23344455555555555555555555555554432221112222223334555566666666555444
No 15
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=8.3e-16 Score=143.50 Aligned_cols=236 Identities=17% Similarity=0.105 Sum_probs=194.6
Q ss_pred CchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-----------------------
Q 020091 78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----------------------- 134 (331)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----------------------- 134 (331)
.=+.++|...+..+.....+ -...+..+|..|+. ..+|++|...|+.+=+.
T Consensus 332 ~y~~~~A~~~~~klp~h~~n--t~wvl~q~GrayFE----l~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~ 405 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSHHYN--TGWVLSQLGRAYFE----LIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVA 405 (638)
T ss_pred HHHHHHHHHHHHhhHHhcCC--chHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHH
Confidence 34556787777765555544 44889999999999 99999999999987321
Q ss_pred -------------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHC-
Q 020091 135 -------------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIA- 189 (331)
Q Consensus 135 -------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~- 189 (331)
..|++|+-+|+||.-+++++.|+++|++|+.+++..+ ....+++|..+|++|+..
T Consensus 406 Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 406 LSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 4789999999999999999999999999999988766 788899999999999865
Q ss_pred -CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC--CH
Q 020091 190 -GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HG 264 (331)
Q Consensus 190 -~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~ 264 (331)
.+-.|||-||.+|.. ++.++.|.-+|++|++.+ +...+..+|.+|.+ .+..++|+.+|++|+..+ ++
T Consensus 486 ~rhYnAwYGlG~vy~K----qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~----~k~~d~AL~~~~~A~~ld~kn~ 557 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLK----QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ----LKRKDKALQLYEKAIHLDPKNP 557 (638)
T ss_pred chhhHHHHhhhhheec----cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH----hhhhhHHHHHHHHHHhcCCCCc
Confidence 588999999999987 788999999999999875 45567889999976 569999999999999874 67
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCC
Q 020091 265 KAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 329 (331)
Q Consensus 265 ~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~--~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~ 329 (331)
-..+.-|.+++..+++++|+..++..-+. +.....++++.++..+...+. |+.-+.=..++.|
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~--Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDL--ALLHFSWALDLDP 622 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchH--HHHhhHHHhcCCC
Confidence 78899999999999999999999988765 556678888888888877754 4444444444444
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.73 E-value=4.5e-15 Score=155.67 Aligned_cols=56 Identities=18% Similarity=0.073 Sum_probs=35.2
Q ss_pred HhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC
Q 020091 73 AASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR 134 (331)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~ 134 (331)
..++..|++++|+..+.+.++..++ ++.+++.||.+|.. .+++++|+.+|+++++.
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~P~--~~~a~~~Lg~~~~~----~g~~~eA~~~l~~Al~~ 332 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRANPK--DSEALGALGQAYSQ----QGDRARAVAQFEKALAL 332 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 3345566666666666666655442 56666667776666 66666776666666653
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.72 E-value=5.4e-15 Score=155.06 Aligned_cols=239 Identities=15% Similarity=0.065 Sum_probs=155.7
Q ss_pred hccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHh---
Q 020091 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYW--- 148 (331)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~--- 148 (331)
..+..|++.+|...+.+.++..+ .++.+++.||.+|.. .+++++|+.+|+++++.. +..++..|+.+|.
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~P--~~~~a~~~Lg~~~~~----~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~ 433 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVDN--TDSYAVLGLGDVAMA----RKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQS 433 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 45678899999999988888765 478899999999999 899999999999998763 6666666666553
Q ss_pred ---------------------------------------cCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHH
Q 020091 149 ---------------------------------------EMDKKEAAISLYRQAAVLGDPAA-----------QPANAEE 178 (331)
Q Consensus 149 ---------------------------------------~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~ 178 (331)
..|++++|+.+|++++...+... ..+++++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 34566666666666666655443 4566666
Q ss_pred HHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH---------------------------------
Q 020091 179 AVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAA--------------------------------- 223 (331)
Q Consensus 179 A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~--------------------------------- 223 (331)
|+..|+++++ ++++.+.+.+|.++.. .++.++|+.++++..
T Consensus 514 A~~~l~~al~~~P~~~~~~~a~al~l~~----~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 514 ADALMRRLAQQKPNDPEQVYAYGLYLSG----SDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 6666666554 3455555555554433 344444444443311
Q ss_pred ---------HCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 020091 224 ---------EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 224 ---------~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
...++.....+|.+|.. .+++++|+..|++++.. +++++++.++.+|...|++++|+..|+++.+
T Consensus 590 ~eA~~~l~~~p~~~~~~~~La~~~~~----~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 590 AEAEALLRQQPPSTRIDLTLADWAQQ----RGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 11234455566666644 34777777777777665 4567777777777777777777777777766
Q ss_pred cC--CHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCC
Q 020091 293 AG--ETAADHVKNVILQQLSATSRDRAMLVVDSWRAMP 328 (331)
Q Consensus 293 ~~--~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~ 328 (331)
.. +......++.++ ...++.++|...+++++...
T Consensus 666 ~~p~~~~~~~~la~~~--~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 666 TANDSLNTQRRVALAW--AALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred cCCCChHHHHHHHHHH--HhCCCHHHHHHHHHHHhhhC
Confidence 53 344444444444 34566677777777766543
No 18
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.71 E-value=1.5e-15 Score=136.05 Aligned_cols=247 Identities=13% Similarity=0.029 Sum_probs=172.9
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHH-HhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHH
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKR-FKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGL 145 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~-y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~ 145 (331)
+.++.+++..|++..|+++++-+.++......+.+ .+|..+ |.+| -+|+.+|.+|-..|+..+ ++.++.+-|+
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa-~nl~~l~flqg---gk~~~~aqqyad~aln~dryn~~a~~nkgn 498 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAA-NNLCALRFLQG---GKDFADAQQYADIALNIDRYNAAALTNKGN 498 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHh-hhhHHHHHHhc---ccchhHHHHHHHHHhcccccCHHHhhcCCc
Confidence 77888999999999999988877766554434444 445544 4444 589999999999998876 8999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHH--HHHCCCHHHHHHHHHHHhcCCCCCCCH
Q 020091 146 MYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQ--ASIAGHVRAQYQLALCLHRGRGVDFNL 212 (331)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~--a~~~~~~~a~~~lg~~y~~G~g~~~d~ 212 (331)
+-+..||+++|.++|+.|+..+.... ..++.++|+.+|.+ ++-.++++.++.++.+|+. ..|.
T Consensus 499 ~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~----led~ 574 (840)
T KOG2003|consen 499 IAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL----LEDP 574 (840)
T ss_pred eeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----hhCH
Confidence 99999999999999999987644332 78999999999988 5667999999999999986 8899
Q ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHH
Q 020091 213 QEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLE 288 (331)
Q Consensus 213 ~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~ 288 (331)
.+|++||.++... .++..+..||.+|-+ +.|..+|+.++-.+-.- -+.+...+||.+|.+..-.++|+.||+
T Consensus 575 aqaie~~~q~~slip~dp~ilskl~dlydq----egdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~e 650 (840)
T KOG2003|consen 575 AQAIELLMQANSLIPNDPAILSKLADLYDQ----EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFE 650 (840)
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHhhc----ccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999764 788888888888844 22555555555444433 233444455555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcC
Q 020091 289 LATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAM 327 (331)
Q Consensus 289 ~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~ 327 (331)
+|+-+.+....-.+-....-...++.++|..+++..-+.
T Consensus 651 kaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 651 KAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 555444433333333333333444444554444444333
No 19
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.71 E-value=7.1e-15 Score=125.71 Aligned_cols=197 Identities=18% Similarity=0.168 Sum_probs=153.3
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
.+.+++.+|.+|.. .+++++|+.+|+++++.. ++.++..+|.++...|++++|+.+|+++++..+
T Consensus 30 ~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--------- 96 (234)
T TIGR02521 30 AAKIRVQLALGYLE----QGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP--------- 96 (234)
T ss_pred HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---------
Confidence 46778888999988 899999999999988764 778888999999999999999999998888765
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCccccHHHHHH
Q 020091 178 EAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GYVRAMYNTSLCYSFGEGLPLSHRQARK 253 (331)
Q Consensus 178 ~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~~~~a~~~lg~~y~~g~g~~~~~~~A~~ 253 (331)
.++.+++++|.+|.. .+++++|+.+|+++++. .....+..+|.+|.. .+++++|..
T Consensus 97 ------------~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 156 (234)
T TIGR02521 97 ------------NNGDVLNNYGTFLCQ----QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK----AGDFDKAEK 156 (234)
T ss_pred ------------CCHHHHHHHHHHHHH----cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH----cCCHHHHHH
Confidence 467788889988876 78899999999999864 345678888888865 448999999
Q ss_pred HHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCC
Q 020091 254 WMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 329 (331)
Q Consensus 254 ~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~ 329 (331)
+|.++... ++..++..+|.++...|++++|..+++++.+..+................++.+++..+.+.+....|
T Consensus 157 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 157 YLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 99998876 45678888999999999999999999998876433333333333334456677778777777665443
No 20
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=99.70 E-value=9.4e-16 Score=121.87 Aligned_cols=163 Identities=22% Similarity=0.284 Sum_probs=139.9
Q ss_pred chHHHhHHHHHHHHHHhCC-CCCHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHH
Q 020091 79 PQLRAASLVCKSWNDALRP-LREAMVLLRWGKRFKHGR-GVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAA 156 (331)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~-~~~~~a~~~LG~~y~~g~-g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A 156 (331)
.+++.|..+ ++.-.+ .+++.++|.+|..++.|. |..++...|+++|+.|++.+++.++.++|.+++.+.-
T Consensus 49 knF~~A~kv----~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~~~aC~~~gLl~~~g~~---- 120 (248)
T KOG4014|consen 49 KNFQAAVKV----FKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANIPQACRYLGLLHWNGEK---- 120 (248)
T ss_pred HHHHHHHHH----HHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCCHHHHhhhhhhhccCcC----
Confidence 466777544 444443 568999999999999999 6789999999999999999999999999999988731
Q ss_pred HHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC----------CCC----------CCHHHHH
Q 020091 157 ISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGR----------GVD----------FNLQEAA 216 (331)
Q Consensus 157 ~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~----------g~~----------~d~~~A~ 216 (331)
+.....|..+|..++++|++.++..+.++|..+|..|. |.+ +|.++|.
T Consensus 121 ------------~r~~dpd~~Ka~~y~traCdl~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~ 188 (248)
T KOG4014|consen 121 ------------DRKADPDSEKAERYMTRACDLEDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKAL 188 (248)
T ss_pred ------------CccCCCCcHHHHHHHHHhccCCCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHH
Confidence 11245678899999999999999999999999999871 333 8999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc
Q 020091 217 RWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 261 (331)
Q Consensus 217 ~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 261 (331)
++-.+|++.+++.++.|+..+|..|.||++|..+|..+-.+|.+.
T Consensus 189 qfa~kACel~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 189 QFAIKACELDIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred HHHHHHHhcCChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888764
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.70 E-value=1.4e-14 Score=147.23 Aligned_cols=239 Identities=13% Similarity=0.069 Sum_probs=186.9
Q ss_pred chHHHhHHHHHHHHHHhCC-CC--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhcCCCHH
Q 020091 79 PQLRAASLVCKSWNDALRP-LR--EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMVDAGLMYWEMDKKE 154 (331)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~-~~--~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~~~~~~~~~ 154 (331)
|++.++...|..+.+..+. .+ ++.+++.||.++.. +++.+|+..|.+++... +......+|..+...|+++
T Consensus 452 ~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-----~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~e 526 (987)
T PRK09782 452 SQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-----TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYA 526 (987)
T ss_pred hhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-----CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHH
Confidence 4455555566666666554 34 89999999999986 58888999888888664 3334555677777899999
Q ss_pred HHHHHHHHHHHcCCCCC----------CccCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 020091 155 AAISLYRQAAVLGDPAA----------QPANAEEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRA 222 (331)
Q Consensus 155 ~A~~~~~~a~~~~~~~~----------~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A 222 (331)
+|+..|++++...+... ..+++++|+.+|+++++.+ +......++..... .+++++|+.+|+++
T Consensus 527 eAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~----~Gr~~eAl~~~~~A 602 (987)
T PRK09782 527 TALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYI----PGQPELALNDLTRS 602 (987)
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh----CCCHHHHHHHHHHH
Confidence 99999999877644332 6789999999999998763 44555555555443 58899999999999
Q ss_pred HHCC-CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHH
Q 020091 223 AEGG-YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAAD 299 (331)
Q Consensus 223 ~~~~-~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~ 299 (331)
++.. +..++.++|.++.. .+++++|+.+|++++.. +++.++.++|.++...|++++|+..|++|++..+..+.
T Consensus 603 L~l~P~~~a~~~LA~~l~~----lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~ 678 (987)
T PRK09782 603 LNIAPSANAYVARATIYRQ----RHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPA 678 (987)
T ss_pred HHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 8752 48889999999976 45999999999999987 57889999999999999999999999999987654444
Q ss_pred HHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 300 HVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 300 ~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
............++.++|...+++..+..|.
T Consensus 679 a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 679 LIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 4444444446677788999999999888774
No 22
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.69 E-value=4.7e-14 Score=131.36 Aligned_cols=242 Identities=16% Similarity=0.092 Sum_probs=189.1
Q ss_pred HHHhccCCchHHHhHHHHHHHHHHhCCCC---CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHH
Q 020091 71 KIAASFTLPQLRAASLVCKSWNDALRPLR---EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGL 145 (331)
Q Consensus 71 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~ 145 (331)
.+......|++.+|...+...... ++.. ...++..||.+|.. .+++++|+.+|+++.+.. +..++..++.
T Consensus 75 la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~~~~La~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~la~ 149 (389)
T PRK11788 75 LGNLFRRRGEVDRAIRIHQNLLSR-PDLTREQRLLALQELGQDYLK----AGLLDRAEELFLQLVDEGDFAEGALQQLLE 149 (389)
T ss_pred HHHHHHHcCcHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 334456789999998877766553 2111 23578899999999 899999999999999753 6778999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCC----------------CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCC
Q 020091 146 MYWEMDKKEAAISLYRQAAVLGDPAA----------------QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRG 207 (331)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~~~~~~----------------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g 207 (331)
++...|++++|+..|++++..++... ..+++++|+.+|+++++. ++..+++.+|.+|..
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--- 226 (389)
T PRK11788 150 IYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALA--- 226 (389)
T ss_pred HHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH---
Confidence 99999999999999999998765432 468999999999998764 578899999999987
Q ss_pred CCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCCHHHH
Q 020091 208 VDFNLQEAARWYLRAAEGGY---VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-HGKAQLEHGLGLFTEGEMMKA 283 (331)
Q Consensus 208 ~~~d~~~A~~~~~~A~~~~~---~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~~~~~~~~~~A 283 (331)
.+++++|+++|+++.+.+. ..++..++.+|.. .++.++|..+++++.... +......++.++...|++++|
T Consensus 227 -~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~----~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A 301 (389)
T PRK11788 227 -QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA----LGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAA 301 (389)
T ss_pred -CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHH
Confidence 7899999999999997643 3457788988865 449999999999998763 344558899999999999999
Q ss_pred HHHHHHHHHcCCHHHHHH--HHHHHhhhchhcHHHHHHHHHhhh
Q 020091 284 VVYLELATRAGETAADHV--KNVILQQLSATSRDRAMLVVDSWR 325 (331)
Q Consensus 284 ~~~~~~A~~~~~~~a~~~--l~~~~~~l~~~~~~~a~~~~~~~~ 325 (331)
+.+|+++++..+.....+ +......-..++..++..++++++
T Consensus 302 ~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 302 QALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 999999999865544333 222221212446677777777665
No 23
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.68 E-value=7.9e-15 Score=135.11 Aligned_cols=231 Identities=12% Similarity=0.061 Sum_probs=195.1
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHH
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLM 146 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~ 146 (331)
+.....+++.|++.+|.-.+....++.| .|++|+..||.+... ..+-..|+..++++.+++ +.+++..||..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP--~haeAW~~LG~~qaE----NE~E~~ai~AL~rcl~LdP~NleaLmaLAVS 362 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDP--QHAEAWQKLGITQAE----NENEQNAISALRRCLELDPTNLEALMALAVS 362 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhCh--HHHHHHHHhhhHhhh----ccchHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 4555667889999988766666666544 589999999999999 899999999999999885 99999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCC------------------CccCHHHHHHHHHHHHHC----CCHHHHHHHHHHHhc
Q 020091 147 YWEMDKKEAAISLYRQAAVLGDPAA------------------QPANAEEAVKLLYQASIA----GHVRAQYQLALCLHR 204 (331)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~~~~~~------------------~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~ 204 (331)
|.+.+.-.+|++++.+=+...++.. ....+..-.++|..++.. -+++.+.-||.+|.-
T Consensus 363 ytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 363 YTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL 442 (579)
T ss_pred HhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc
Confidence 9999999999999999887765554 222345566777777654 479999999999975
Q ss_pred CCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCH
Q 020091 205 GRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEM 280 (331)
Q Consensus 205 G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~ 280 (331)
.+++++|+.+|+.|+.. .+..-|+.||..+..|. ..++|+..|++|++. ++..+.++||..++..|.|
T Consensus 443 ----s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~----~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~y 514 (579)
T KOG1125|consen 443 ----SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGN----RSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAY 514 (579)
T ss_pred ----chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCc----ccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhH
Confidence 78999999999999865 77888999999998865 899999999999988 7899999999999999999
Q ss_pred HHHHHHHHHHHHcCC------------HHHHHHHHHHHhhhchhc
Q 020091 281 MKAVVYLELATRAGE------------TAADHVKNVILQQLSATS 313 (331)
Q Consensus 281 ~~A~~~~~~A~~~~~------------~~a~~~l~~~~~~l~~~~ 313 (331)
++|..+|-.|+.+.. ...+..|..++..+.+.|
T Consensus 515 kEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 515 KEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred HHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 999999999986521 356778888888887777
No 24
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.1e-14 Score=130.93 Aligned_cols=236 Identities=19% Similarity=0.129 Sum_probs=126.9
Q ss_pred cCCChHHHHHHHHhccCCchHHHhHHHHHHHHHHhCCC-CC-------------------------------HHHHHHHH
Q 020091 61 FASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPL-RE-------------------------------AMVLLRWG 108 (331)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~-------------------------------~~a~~~LG 108 (331)
|...+.-.-+.+...+...++++|+.++..+.+..|-. ++ ++.+..+|
T Consensus 258 f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIa 337 (559)
T KOG1155|consen 258 FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIA 337 (559)
T ss_pred CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeeh
Confidence 44433333344455667778888887777777664421 12 22333444
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccC
Q 020091 109 KRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-----------QPAN 175 (331)
Q Consensus 109 ~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~ 175 (331)
..|.- .++.++|+.||++|+.++ ...++..+|.-|.+.++...|+..|++|++++|.+- ..+-
T Consensus 338 NYYSl----r~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~M 413 (559)
T KOG1155|consen 338 NYYSL----RSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKM 413 (559)
T ss_pred hHHHH----HHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcc
Confidence 44544 556666666666666554 555666666666666666666666666666655432 4444
Q ss_pred HHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHhcCCCccccHHHH
Q 020091 176 AEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYV--RAMYNTSLCYSFGEGLPLSHRQA 251 (331)
Q Consensus 176 ~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~--~a~~~lg~~y~~g~g~~~~~~~A 251 (331)
+.-|+.+|++|.. ++++..+.-||.||.. ..+.++|+.+|++|+..|+. .+++.||.+|.+ .++.++|
T Consensus 414 h~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k----l~~~~eAiKCykrai~~~dte~~~l~~LakLye~----l~d~~eA 485 (559)
T KOG1155|consen 414 HFYALYYFQKALELKPNDSRLWVALGECYEK----LNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEE----LKDLNEA 485 (559)
T ss_pred hHHHHHHHHHHHhcCCCchHHHHHHHHHHHH----hccHHHHHHHHHHHHhccccchHHHHHHHHHHHH----HHhHHHH
Confidence 5555555555543 3455555555555544 44555555555555555544 455555555544 3355555
Q ss_pred HHHHHHHHHc-------CC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHH
Q 020091 252 RKWMKRAADC-------GH--GKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVD 322 (331)
Q Consensus 252 ~~~~~~a~~~-------~~--~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~ 322 (331)
..+|++.++. ++ ..+...|+..+.+.+++++|-.|..+++.- ..+.++|+.+++
T Consensus 486 a~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~-----------------~~e~eeak~LlR 548 (559)
T KOG1155|consen 486 AQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG-----------------ETECEEAKALLR 548 (559)
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC-----------------CchHHHHHHHHH
Confidence 5555555431 11 233444555555555555555554444332 234456666666
Q ss_pred hhh
Q 020091 323 SWR 325 (331)
Q Consensus 323 ~~~ 325 (331)
+++
T Consensus 549 eir 551 (559)
T KOG1155|consen 549 EIR 551 (559)
T ss_pred HHH
Confidence 665
No 25
>PRK12370 invasion protein regulator; Provisional
Probab=99.66 E-value=7.6e-14 Score=135.65 Aligned_cols=186 Identities=13% Similarity=-0.014 Sum_probs=141.2
Q ss_pred CCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhc----CC-CCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhc
Q 020091 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKH----GR-GVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWE 149 (331)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~----g~-g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~ 149 (331)
..+++.+|...+.+.++..| +++.++..||.+|.. |. ...+++++|..++++|++.+ ++.++..+|.++..
T Consensus 273 ~~~~~~~A~~~~~~Al~ldP--~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~ 350 (553)
T PRK12370 273 TPYSLQQALKLLTQCVNMSP--NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTI 350 (553)
T ss_pred CHHHHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34567788888887777655 478889999987752 11 13567999999999999885 89999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CC
Q 020091 150 MDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GY 227 (331)
Q Consensus 150 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~ 227 (331)
.|++++|+.+|+++++++| +++.+++++|.+|.. .+++++|+.+|+++++. .+
T Consensus 351 ~g~~~~A~~~~~~Al~l~P---------------------~~~~a~~~lg~~l~~----~G~~~eAi~~~~~Al~l~P~~ 405 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLSP---------------------ISADIKYYYGWNLFM----AGQLEEALQTINECLKLDPTR 405 (553)
T ss_pred ccCHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999987 577888888888775 67788888888888775 33
Q ss_pred HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 228 VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC---GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 228 ~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
+.+.+.++.++.. ..++++|+.+++++... +++.++..+|.+|...|++++|..++++....
T Consensus 406 ~~~~~~~~~~~~~----~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 406 AAAGITKLWITYY----HTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred hhhHHHHHHHHHh----ccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 4444444444433 23678888888887654 35667778888888888888888888776554
No 26
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.65 E-value=5.6e-14 Score=116.20 Aligned_cols=196 Identities=19% Similarity=0.157 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHH
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEE 178 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 178 (331)
+.+...||.-|+. .+|+..|..-+++|++.+ +..++..++.+|...|+.+.|.+.|++|+.+.+
T Consensus 35 a~arlqLal~YL~----~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p---------- 100 (250)
T COG3063 35 AKARLQLALGYLQ----QGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP---------- 100 (250)
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC----------
Confidence 3556678888888 799999999999998875 888999999999999999999999999998877
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCccccHHHHHHH
Q 020091 179 AVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GYVRAMYNTSLCYSFGEGLPLSHRQARKW 254 (331)
Q Consensus 179 A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 254 (331)
++.++.+|.|..+.. ++.+++|..+|++|+.. ....++-|+|.|-.+ .++.+.|.++
T Consensus 101 -----------~~GdVLNNYG~FLC~----qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~----~gq~~~A~~~ 161 (250)
T COG3063 101 -----------NNGDVLNNYGAFLCA----QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALK----AGQFDQAEEY 161 (250)
T ss_pred -----------CccchhhhhhHHHHh----CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh----cCCchhHHHH
Confidence 588899999987765 66799999999999876 346778899999876 4489999999
Q ss_pred HHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCC
Q 020091 255 MKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 329 (331)
Q Consensus 255 ~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~ 329 (331)
|+++++. ..+.+...++..+++.|++..|..++++-..-+...+..++-.+...-..++.+.+...-.++.+.-|
T Consensus 162 l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 162 LKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 9999877 56788888999999999999999999988777666665544444433445666666655555655554
No 27
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=9.3e-14 Score=124.98 Aligned_cols=211 Identities=15% Similarity=0.084 Sum_probs=169.7
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-------
Q 020091 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGST---LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA------- 171 (331)
Q Consensus 102 ~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~---~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~------- 171 (331)
..-+.++.+|.. ....+++++-++.-+..|.+ .-....|.+.....|+++|+..|+.....+|=.-
T Consensus 228 M~~~F~~~a~~e----l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlyS 303 (559)
T KOG1155|consen 228 MKKFFLKKAYQE----LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYS 303 (559)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHh
Confidence 334455566655 45667777777777777644 3445678888888999999999998887633221
Q ss_pred --------------------------------------CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCC
Q 020091 172 --------------------------------------QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFN 211 (331)
Q Consensus 172 --------------------------------------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d 211 (331)
..++.++|+.+|++|+++ +...++.-+|+=|.+ .++
T Consensus 304 N~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvE----mKN 379 (559)
T KOG1155|consen 304 NVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVE----MKN 379 (559)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHH----hcc
Confidence 678899999999999876 578899999999987 899
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHH
Q 020091 212 LQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYL 287 (331)
Q Consensus 212 ~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~ 287 (331)
...|++.|++|++. -|..|++.||..|.- .+-+.=|+.||++|... .+...+..||.||.+.++.++|+++|
T Consensus 380 t~AAi~sYRrAvdi~p~DyRAWYGLGQaYei----m~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCy 455 (559)
T KOG1155|consen 380 THAAIESYRRAVDINPRDYRAWYGLGQAYEI----MKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCY 455 (559)
T ss_pred cHHHHHHHHHHHhcCchhHHHHhhhhHHHHH----hcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999999999987 467899999999965 55788999999999887 56778889999999999999999999
Q ss_pred HHHHHcCCH--HHHHHHHHHHhhhchhcHHHHHHHHHhhhc
Q 020091 288 ELATRAGET--AADHVKNVILQQLSATSRDRAMLVVDSWRA 326 (331)
Q Consensus 288 ~~A~~~~~~--~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~ 326 (331)
++|+..|+. .+...++.+++.+... ++|...+.+..+
T Consensus 456 krai~~~dte~~~l~~LakLye~l~d~--~eAa~~yek~v~ 494 (559)
T KOG1155|consen 456 KRAILLGDTEGSALVRLAKLYEELKDL--NEAAQYYEKYVE 494 (559)
T ss_pred HHHHhccccchHHHHHHHHHHHHHHhH--HHHHHHHHHHHH
Confidence 999999876 7888888888887544 577777777553
No 28
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=5.5e-15 Score=138.07 Aligned_cols=220 Identities=14% Similarity=0.050 Sum_probs=177.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-------
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA--RGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA------- 171 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~------- 171 (331)
...+..+|..|.. ...-+..+|+..|.+--+ .+...++..+|..|++..++++|..+|+.+-...+-..
T Consensus 317 ~~llr~~~~~~~~--~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyS 394 (638)
T KOG1126|consen 317 MELLRGLGEGYRS--LSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYS 394 (638)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHH
Confidence 3456667766654 114567789999998322 25667888999999999999999999999876644333
Q ss_pred --------------------------------------CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCC
Q 020091 172 --------------------------------------QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFN 211 (331)
Q Consensus 172 --------------------------------------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d 211 (331)
.++|++.|+++|++|+.. +++.|+.-+|.=+.. ...
T Consensus 395 T~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~----~ee 470 (638)
T KOG1126|consen 395 TTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIA----TEE 470 (638)
T ss_pred HHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhh----hHH
Confidence 689999999999999865 688899999987654 678
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC--HHHHHHHHHHHhccCCHHHHHHHH
Q 020091 212 LQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVVYL 287 (331)
Q Consensus 212 ~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~~~~~~~A~~~~ 287 (331)
+++|..+|++|+.. .+..|||.||.+|.+ .+.++.|..+|++|++.+. ......+|.++...|+.++|+.+|
T Consensus 471 ~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K----qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~ 546 (638)
T KOG1126|consen 471 FDKAMKSFRKALGVDPRHYNAWYGLGTVYLK----QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLY 546 (638)
T ss_pred HHhHHHHHHhhhcCCchhhHHHHhhhhheec----cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHH
Confidence 99999999999865 689999999999987 5599999999999999865 455678999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 288 ELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 288 ~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
++|+..++.+..-.+..+......++..+|.++++++++..|.
T Consensus 547 ~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~ 589 (638)
T KOG1126|consen 547 EKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQ 589 (638)
T ss_pred HHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc
Confidence 9999987655555444555455556668999999999988875
No 29
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.63 E-value=3.7e-15 Score=132.77 Aligned_cols=245 Identities=16% Similarity=0.026 Sum_probs=100.9
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHH
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLM 146 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~ 146 (331)
+..+..++..|++++|..++.......++..++..+..+|.+... .++++.|+..|++.+..+ .+..+..++.+
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~----~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l 87 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWS----LGDYDEAIEAYEKLLASDKANPQDYERLIQL 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc----ccccccccccccccccccccccccccccccc
Confidence 444566788899999988776655555445678888899999988 899999999999998775 56667778777
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCC----------CccCHHHHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCCCCCH
Q 020091 147 YWEMDKKEAAISLYRQAAVLGDPAA----------QPANAEEAVKLLYQASIA----GHVRAQYQLALCLHRGRGVDFNL 212 (331)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~~~~~~----------~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~G~g~~~d~ 212 (331)
...+++++|+.+++++.+..+... ..++++++...+.++... .++..+..+|.++.. .|+.
T Consensus 88 -~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~----~G~~ 162 (280)
T PF13429_consen 88 -LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ----LGDP 162 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH----CCHH
T ss_pred -cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH----cCCH
Confidence 688999999999988876543222 678899999999886543 467888899999987 7899
Q ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHH
Q 020091 213 QEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLE 288 (331)
Q Consensus 213 ~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~ 288 (331)
++|+++|++|++. ++..+...+++++.. .++.+++...+...... .++..+..+|.++...|+.++|+.+|+
T Consensus 163 ~~A~~~~~~al~~~P~~~~~~~~l~~~li~----~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~ 238 (280)
T PF13429_consen 163 DKALRDYRKALELDPDDPDARNALAWLLID----MGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLE 238 (280)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHCT----TCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccc
Confidence 9999999999875 678899999999964 33788877777766544 566778899999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhc
Q 020091 289 LATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRA 326 (331)
Q Consensus 289 ~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~ 326 (331)
++....+.+....+.........++.++|..+.+++.+
T Consensus 239 ~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 239 KALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccccccccc
Confidence 99997665555555555555666777889888888653
No 30
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.62 E-value=2.1e-13 Score=122.30 Aligned_cols=214 Identities=13% Similarity=0.003 Sum_probs=147.5
Q ss_pred HHHhHHHHHHHHHHhC--CCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHH
Q 020091 81 LRAASLVCKSWNDALR--PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAA 156 (331)
Q Consensus 81 ~~~a~~~~~~~~~~~~--~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A 156 (331)
.+.++..+.+.+...+ +...+..++.+|.+|.. .+++++|+..|.++++.. ++.+++++|.++...|++++|
T Consensus 42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~----~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDS----LGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3444444444443222 12357789999999988 899999999999998874 889999999999999999999
Q ss_pred HHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHCCCHHHHHHHHH-HHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 157 ISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIAGHVRAQYQLAL-CLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 157 ~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~~~~~a~~~lg~-~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
+..|++++++++... ..+++++|+..|+++++.+....+..+.. ++.. .+++++|+..|.+++.
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~----~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAES----KLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHc----cCCHHHHHHHHHHHHh
Confidence 999999999887765 57889999999999887532222222222 2222 5689999999988876
Q ss_pred CCCHHHHH-HHHHHHhcCCCccccHHHHHHHHHHHH----Hc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-H
Q 020091 225 GGYVRAMY-NTSLCYSFGEGLPLSHRQARKWMKRAA----DC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE-T 296 (331)
Q Consensus 225 ~~~~~a~~-~lg~~y~~g~g~~~~~~~A~~~~~~a~----~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~-~ 296 (331)
..+...+. .+..++ .|.. +..+++..+.++. +. ...+++++||.++...|++++|+.+|++|++.++ .
T Consensus 194 ~~~~~~~~~~~~~~~-lg~~---~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 194 KLDKEQWGWNIVEFY-LGKI---SEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred hCCccccHHHHHHHH-ccCC---CHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 54443332 222233 2221 2233443333322 22 3457899999999999999999999999999874 4
Q ss_pred HHHHHHHHHH
Q 020091 297 AADHVKNVIL 306 (331)
Q Consensus 297 ~a~~~l~~~~ 306 (331)
...+.+..+.
T Consensus 270 ~~e~~~~~~e 279 (296)
T PRK11189 270 FVEHRYALLE 279 (296)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 31
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.60 E-value=1e-12 Score=112.31 Aligned_cols=195 Identities=14% Similarity=0.084 Sum_probs=163.5
Q ss_pred HHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHH
Q 020091 66 FDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDA 143 (331)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~l 143 (331)
......+...+..|++++|...+.+.++..+ .++.++..+|.+|.. .+++++|+.+|+++++.. ++.+++++
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~ 105 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDP--DDYLAYLALALYYQQ----LGELEKAEDSFRRALTLNPNNGDVLNNY 105 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 3345555667788999999988888877654 468899999999999 899999999999999864 78899999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 020091 144 GLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAA 223 (331)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~ 223 (331)
|.++...|++++|+.+|++++..... ......++++|.+|.. .+++++|..+|.+++
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~-------------------~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 162 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLY-------------------PQPARSLENAGLCALK----AGDFDKAEKYLTRAL 162 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcccc-------------------ccchHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Confidence 99999999999999999999875321 1356778899999986 789999999999998
Q ss_pred HC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 224 EG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 224 ~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
.. ++..++..+|.++.. .+++++|..+++++... .++..+..++.++...|+.++|..+.+.+...
T Consensus 163 ~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 163 QIDPQRPESLLELAELYYL----RGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HhCcCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 75 567889999999976 45999999999999876 45677778899999999999999998876543
No 32
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.59 E-value=1.2e-12 Score=131.92 Aligned_cols=87 Identities=9% Similarity=-0.047 Sum_probs=41.7
Q ss_pred cCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCH
Q 020091 76 FTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKK 153 (331)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~ 153 (331)
...|++.+|...+.+.++..|+ ++.+...+|.++.. .+++++|+.++++++... ++. ++.+|.++...|++
T Consensus 60 ~~~g~~~~A~~~~~~al~~~P~--~~~a~~~la~~l~~----~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~ 132 (765)
T PRK10049 60 RNLKQWQNSLTLWQKALSLEPQ--NDDYQRGLILTLAD----AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRH 132 (765)
T ss_pred HHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCH
Confidence 3445555554444444444332 34444455555544 455555555555554432 444 44555555555555
Q ss_pred HHHHHHHHHHHHcCCC
Q 020091 154 EAAISLYRQAAVLGDP 169 (331)
Q Consensus 154 ~~A~~~~~~a~~~~~~ 169 (331)
++|+..|+++++..|.
T Consensus 133 ~~Al~~l~~al~~~P~ 148 (765)
T PRK10049 133 WDELRAMTQALPRAPQ 148 (765)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 5555555555444433
No 33
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.59 E-value=2.6e-12 Score=129.53 Aligned_cols=97 Identities=13% Similarity=-0.031 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 020091 230 AMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQ 307 (331)
Q Consensus 230 a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~ 307 (331)
++..++.++.. .++.++|+..|++++.. ++...++.+|.++...|++++|+..++++++..+.+....+..++.
T Consensus 361 a~~~~a~~l~~----~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~ 436 (765)
T PRK10049 361 GQSLLSQVAKY----SNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWT 436 (765)
T ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 33444444433 23566666666666554 4556666666666667777777777777766655555555555556
Q ss_pred hhchhcHHHHHHHHHhhhcCCCC
Q 020091 308 QLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 308 ~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
.+..++.++|..+++++++..|+
T Consensus 437 al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 437 ALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCC
Confidence 66666667777777776666654
No 34
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.59 E-value=2e-12 Score=115.95 Aligned_cols=182 Identities=12% Similarity=-0.048 Sum_probs=141.1
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGL 145 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~ 145 (331)
...........|++.+|...+.+.++..|+ ++.+++.+|.+|.. .+++++|+..|.++++.. +..+++++|.
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~--~~~a~~~lg~~~~~----~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 140 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPD--MADAYNYLGIYLTQ----AGNFDAAYEAFDSVLELDPTYNYAYLNRGI 140 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 445555566779999999888888887654 79999999999999 999999999999999874 8899999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCC----------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-CCCCCCCHHH
Q 020091 146 MYWEMDKKEAAISLYRQAAVLGDPAA----------QPANAEEAVKLLYQASIAGHVRAQYQLALCLHR-GRGVDFNLQE 214 (331)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~~~~~~----------~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~-G~g~~~d~~~ 214 (331)
++...|++++|+..|++++...+... ...++++|+..+.+++...++..+. ++..+.. |. .+..+
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~lg~---~~~~~ 216 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVEFYLGK---ISEET 216 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccH-HHHHHHHccC---CCHHH
Confidence 99999999999999999999987664 5678999999998877654544443 3443332 21 12233
Q ss_pred HHHHHHHHH----H--CCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC
Q 020091 215 AARWYLRAA----E--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH 263 (331)
Q Consensus 215 A~~~~~~A~----~--~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 263 (331)
++..+.++. + .....++++||.+|.. .+++++|+.+|++|+..+.
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~----~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 217 LMERLKAGATDNTELAERLCETYFYLAKYYLS----LGDLDEAAALFKLALANNV 267 (296)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCC
Confidence 443343322 2 2356789999999975 4499999999999998864
No 35
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=3.3e-13 Score=124.09 Aligned_cols=222 Identities=16% Similarity=0.095 Sum_probs=183.1
Q ss_pred HhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcC
Q 020091 73 AASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEM 150 (331)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~ 150 (331)
+-+++.|+......+..+..+.-|+ .+..++.+|..|.. -+++++|..||-||..++ ...+|...|..+.-.
T Consensus 286 a~l~el~~~n~Lf~lsh~LV~~yP~--~a~sW~aVg~YYl~----i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e 359 (611)
T KOG1173|consen 286 ACLYELGKSNKLFLLSHKLVDLYPS--KALSWFAVGCYYLM----IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGE 359 (611)
T ss_pred HHHHHhcccchHHHHHHHHHHhCCC--CCcchhhHHHHHHH----hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhc
Confidence 3455666666665555666666554 57789999999999 899999999999999876 788999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 020091 151 DKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAAR 217 (331)
Q Consensus 151 ~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~ 217 (331)
+..++|+..|..|..+-+... ...+++-|..+|.+|.. +.+|-....+|.+... .+.+.+|..
T Consensus 360 ~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~----~~~y~~A~~ 435 (611)
T KOG1173|consen 360 GEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYT----YEEYPEALK 435 (611)
T ss_pred chHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeeh----HhhhHHHHH
Confidence 999999999999999866655 68999999999999754 6899999999998875 678999999
Q ss_pred HHHHHHHC----CC-----HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHH
Q 020091 218 WYLRAAEG----GY-----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVY 286 (331)
Q Consensus 218 ~~~~A~~~----~~-----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~ 286 (331)
||+.+++. +. ...+.+||.+|.. .+.+.+|+.+|++++.. .++..+-.+|.+|...|+++.|+.+
T Consensus 436 ~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk----l~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~ 511 (611)
T KOG1173|consen 436 YFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK----LNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDH 511 (611)
T ss_pred HHHHHHHHhhhccccccchhHHHHhHHHHHHH----HhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHH
Confidence 99999732 22 3348899999977 56899999999999987 6788889999999999999999999
Q ss_pred HHHHHHcCC--HHHHHHHHHHHhh
Q 020091 287 LELATRAGE--TAADHVKNVILQQ 308 (331)
Q Consensus 287 ~~~A~~~~~--~~a~~~l~~~~~~ 308 (331)
|.+|+-..+ .-+...|+...+.
T Consensus 512 fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 512 FHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHh
Confidence 999987754 3455566655544
No 36
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.57 E-value=5.7e-13 Score=129.15 Aligned_cols=236 Identities=14% Similarity=0.152 Sum_probs=197.1
Q ss_pred HHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCHHHHH
Q 020091 81 LRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKKEAAI 157 (331)
Q Consensus 81 ~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~~~A~ 157 (331)
++.|...+...++..++ |..++..-+.+.+. .+||..|+.||++++... -++.-..+|.|++..++.+.|+
T Consensus 146 ~~~A~a~F~~Vl~~sp~--Nil~LlGkA~i~yn----kkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~ 219 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPD--NILALLGKARIAYN----KKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKAL 219 (1018)
T ss_pred HHHHHHHHHHHHhhCCc--chHHHHHHHHHHhc----cccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHH
Confidence 47888888888888764 78888777777888 899999999999998764 6677778999999999999999
Q ss_pred HHHHHHHHcCCCCC--------------CccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 020091 158 SLYRQAAVLGDPAA--------------QPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLR 221 (331)
Q Consensus 158 ~~~~~a~~~~~~~~--------------~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~ 221 (331)
..|+++.+++|... ....+.+++..+.++-. ..+|.+...|+..|.. .+|+..+.++..-
T Consensus 220 ~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf----K~dy~~v~~la~~ 295 (1018)
T KOG2002|consen 220 LAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYF----KKDYERVWHLAEH 295 (1018)
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh----cccHHHHHHHHHH
Confidence 99999999988655 56778889999998854 4789999999999886 8999999999998
Q ss_pred HHHCC-----CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 222 AAEGG-----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH---GKAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 222 A~~~~-----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
|+... -..++|++|.+|+. .| |+++|..||.++....+ .-..+.||.+|...|+++.|..+|++....
T Consensus 296 ai~~t~~~~~~aes~Y~~gRs~Ha-~G---d~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~ 371 (1018)
T KOG2002|consen 296 AIKNTENKSIKAESFYQLGRSYHA-QG---DFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ 371 (1018)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHh-hc---cHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh
Confidence 87653 35679999999965 44 99999999999987633 567889999999999999999999999876
Q ss_pred --CCHHHHHHHHHHHhhh--chhcHHHHHHHHHhhhcCCCC
Q 020091 294 --GETAADHVKNVILQQL--SATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 294 --~~~~a~~~l~~~~~~l--~~~~~~~a~~~~~~~~~~~~~ 330 (331)
+.......++.++... .+..+++|..++.+.++.-|.
T Consensus 372 ~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~ 412 (1018)
T KOG2002|consen 372 LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV 412 (1018)
T ss_pred CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc
Confidence 5677888888888777 355667888888887765553
No 37
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=99.56 E-value=3.7e-13 Score=107.22 Aligned_cols=176 Identities=19% Similarity=0.162 Sum_probs=125.1
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
..|++++.||.... |+.+|+++|...|+.-++. +++.+++.+|..+..++ -+...++.
T Consensus 32 K~Pe~C~lLgdYlE---gi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GK------------------gG~~~~l~ 90 (248)
T KOG4014|consen 32 KRPESCQLLGDYLE---GIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGK------------------GGDDASLS 90 (248)
T ss_pred CCchHHHHHHHHHH---HHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhccc------------------CCCccCHH
Confidence 47999999998764 3689999999999998876 59999999998887752 12566788
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHH
Q 020091 178 EAVKLLYQASIAGHVRAQYQLALCLHRGRG---VDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKW 254 (331)
Q Consensus 178 ~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g---~~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 254 (331)
+|+++|+.+++.+.+.+..++|.++.+|.- ..-|..+|.+|+++|++.++..++++|..+|..|.. ++..-
T Consensus 91 ~a~r~~~~aC~~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~~aCf~LS~m~~~g~~------k~~t~ 164 (248)
T KOG4014|consen 91 KAIRPMKIACDANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDGEACFLLSTMYMGGKE------KFKTN 164 (248)
T ss_pred HHHHHHHHHhccCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCchHHHHHHHHHhccch------hhccc
Confidence 888888888888999999999999998762 244588999999999999999999999999977521 10000
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 020091 255 MKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQ 307 (331)
Q Consensus 255 ~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~ 307 (331)
|.-.|.+.-.-.++ .-.+|.++|++|--+|++.+...++.|+..++.
T Consensus 165 ---ap~~g~p~~~~~~~---~~~kDMdka~qfa~kACel~~~~aCAN~SrMyk 211 (248)
T KOG4014|consen 165 ---APGEGKPLDRAELG---SLSKDMDKALQFAIKACELDIPQACANVSRMYK 211 (248)
T ss_pred ---CCCCCCCcchhhhh---hhhHhHHHHHHHHHHHHhcCChHHHhhHHHHHH
Confidence 11112221122222 223455555555555555555555555555554
No 38
>PRK12370 invasion protein regulator; Provisional
Probab=99.56 E-value=9.3e-13 Score=128.08 Aligned_cols=196 Identities=11% Similarity=-0.030 Sum_probs=153.7
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHcCCCCC
Q 020091 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEM---------DKKEAAISLYRQAAVLGDPAA 171 (331)
Q Consensus 103 a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~---------~~~~~A~~~~~~a~~~~~~~~ 171 (331)
.+|..|..+... ....++++|+.+|++|++.. ++.++..||.+|... +++++|+.++++++++++
T Consensus 260 ~~~lrg~~~~~~-~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP--- 335 (553)
T PRK12370 260 MVYLRGKHELNQ-YTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH--- 335 (553)
T ss_pred HHHHHhHHHHHc-cCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC---
Confidence 355556544331 23567899999999999875 888999999887632 346677777777776655
Q ss_pred CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHH
Q 020091 172 QPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHR 249 (331)
Q Consensus 172 ~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~ 249 (331)
+++.++..+|.++.. .+++++|+.+|++|++. +++.+++.+|.++.. .++++
T Consensus 336 ------------------~~~~a~~~lg~~~~~----~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~G~~~ 389 (553)
T PRK12370 336 ------------------NNPQALGLLGLINTI----HSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM----AGQLE 389 (553)
T ss_pred ------------------CCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHH
Confidence 689999999999976 78999999999999876 678899999999976 44999
Q ss_pred HHHHHHHHHHHcCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHhhhchhcHHHHHHHHHhh
Q 020091 250 QARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVVYLELATRA---GETAADHVKNVILQQLSATSRDRAMLVVDSW 324 (331)
Q Consensus 250 ~A~~~~~~a~~~~~--~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~---~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~ 324 (331)
+|+.+|+++++... +.+.+.++.+++..|++++|+.+++++++. +...+..+++.++. ..++.++|.+.++++
T Consensus 390 eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~--~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 390 EALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLS--LKGKHELARKLTKEI 467 (553)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHH--hCCCHHHHHHHHHHh
Confidence 99999999998843 455566677788899999999999999865 34566677777665 467778999999998
Q ss_pred hcCCCC
Q 020091 325 RAMPSL 330 (331)
Q Consensus 325 ~~~~~~ 330 (331)
...+|.
T Consensus 468 ~~~~~~ 473 (553)
T PRK12370 468 STQEIT 473 (553)
T ss_pred hhccch
Confidence 776664
No 39
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.56 E-value=6.3e-13 Score=115.02 Aligned_cols=212 Identities=16% Similarity=0.116 Sum_probs=117.5
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------Cc
Q 020091 106 RWGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-----------QP 173 (331)
Q Consensus 106 ~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~ 173 (331)
.+|.||.+ .+=+.+|...|+.++.+. +++....|+.+|.+......|+..|.+.++.-|.+. ..
T Consensus 228 Q~gkCylr----Lgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 228 QMGKCYLR----LGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHH----hcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence 45666665 555666666666665543 566666666666666666666666666555544433 44
Q ss_pred cCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhcCCCccccHH
Q 020091 174 ANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YVRAMYNTSLCYSFGEGLPLSHR 249 (331)
Q Consensus 174 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~--~~~a~~~lg~~y~~g~g~~~~~~ 249 (331)
+++++|+++|+.+++. .+.++.-.+|.-|.. .++.+-|+.||++.+..| ++.-..|+|.|-..+. +++
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY----~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaq----Q~D 375 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFY----DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQ----QID 375 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeecccc----CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhc----chh
Confidence 5556666666665554 345555555544443 345666666666666554 3455556666554422 556
Q ss_pred HHHHHHHHHHHc-----CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhh
Q 020091 250 QARKWMKRAADC-----GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSW 324 (331)
Q Consensus 250 ~A~~~~~~a~~~-----~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~ 324 (331)
.++..|++|... .-.+.|++||.+....||+..|...|+.++-.++..+..+.+........+++..|..++...
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 666666665433 113556666666666666666666666666554444444334444445556666666666555
Q ss_pred hcCCC
Q 020091 325 RAMPS 329 (331)
Q Consensus 325 ~~~~~ 329 (331)
+...|
T Consensus 456 ~s~~P 460 (478)
T KOG1129|consen 456 KSVMP 460 (478)
T ss_pred hhhCc
Confidence 55554
No 40
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.53 E-value=4.1e-13 Score=116.15 Aligned_cols=205 Identities=17% Similarity=0.150 Sum_probs=174.0
Q ss_pred CCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHH
Q 020091 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKE 154 (331)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~ 154 (331)
..|-+.+|...+..-+ ..+.+++.+..|..+|.+ ...+..|...|...++. +++.-...++.++...++.+
T Consensus 235 rLgm~r~AekqlqssL---~q~~~~dTfllLskvY~r----idQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~ 307 (478)
T KOG1129|consen 235 RLGMPRRAEKQLQSSL---TQFPHPDTFLLLSKVYQR----IDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQE 307 (478)
T ss_pred HhcChhhhHHHHHHHh---hcCCchhHHHHHHHHHHH----hccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHH
Confidence 4455566653333333 336789999999999999 89999999999999987 47777788889999999999
Q ss_pred HHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 020091 155 AAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYLR 221 (331)
Q Consensus 155 ~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~ 221 (331)
+|.++|+.+++..+.+. -.++++-|+.+|++.+..| +++-..|+|.|+.. .++++-++..|++
T Consensus 308 ~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~y----aqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 308 DALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLY----AQQIDLVLPSFQR 383 (478)
T ss_pred HHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHh----hcchhhhHHHHHH
Confidence 99999999999877665 6789999999999999986 78999999999987 5789999999999
Q ss_pred HHHC-----CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 020091 222 AAEG-----GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 294 (331)
Q Consensus 222 A~~~-----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~ 294 (331)
|... .-.+.|||||.+. -+.| |+.-|..+|+.|... .+.+++++||.+-...|++++|..+|.-|-...
T Consensus 384 Alstat~~~~aaDvWYNlg~va-V~iG---D~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVA-VTIG---DFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHhhccCcchhhhhhhccceeE-Eecc---chHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 9753 2367899999998 5666 999999999999876 678999999999999999999999999987765
Q ss_pred CH
Q 020091 295 ET 296 (331)
Q Consensus 295 ~~ 296 (331)
+.
T Consensus 460 P~ 461 (478)
T KOG1129|consen 460 PD 461 (478)
T ss_pred cc
Confidence 53
No 41
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.52 E-value=1e-12 Score=108.72 Aligned_cols=162 Identities=15% Similarity=0.064 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 020091 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAA 216 (331)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~ 216 (331)
..+...||.-|.+.||+..|..-+++|++.++ .+..++.-++.+|.. .++.+.|.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DP---------------------s~~~a~~~~A~~Yq~----~Ge~~~A~ 89 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDP---------------------SYYLAHLVRAHYYQK----LGENDLAD 89 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---------------------ccHHHHHHHHHHHHH----cCChhhHH
Confidence 35678899999999999999999999999987 589999999999987 78899999
Q ss_pred HHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc----CCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 020091 217 RWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GHGKAQLEHGLGLFTEGEMMKAVVYLELA 290 (331)
Q Consensus 217 ~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A 290 (331)
+.|++|+.. ++.+.++|.|+.+.. .| .+++|..+|++|+.. ...+++.|+|.|-...|+++.|..+|+++
T Consensus 90 e~YrkAlsl~p~~GdVLNNYG~FLC~-qg---~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ra 165 (250)
T COG3063 90 ESYRKALSLAPNNGDVLNNYGAFLCA-QG---RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRA 165 (250)
T ss_pred HHHHHHHhcCCCccchhhhhhHHHHh-CC---ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHH
Confidence 999999876 788999999999965 44 999999999999987 24688999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcC
Q 020091 291 TRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAM 327 (331)
Q Consensus 291 ~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~ 327 (331)
++.++.....++.+.-.++..++.-+|...++.+..+
T Consensus 166 L~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~ 202 (250)
T COG3063 166 LELDPQFPPALLELARLHYKAGDYAPARLYLERYQQR 202 (250)
T ss_pred HHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhc
Confidence 9999988888899999999999999999999887644
No 42
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.50 E-value=1.7e-11 Score=119.11 Aligned_cols=239 Identities=11% Similarity=-0.000 Sum_probs=171.9
Q ss_pred chHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCCH
Q 020091 79 PQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDKK 153 (331)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~~ 153 (331)
..+..++......+..- ..||.++..|+..|+. .+|++.+.++..-++... -++++|++|.+|...||+
T Consensus 250 ~s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyf----K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ 323 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKEN--NENPVALNHLANHFYF----KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDF 323 (1018)
T ss_pred HHHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhh----cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccH
Confidence 44556655555555443 3478888888888887 788888888888776543 455678888888888888
Q ss_pred HHHHHHHHHHHHcCCCCC------------CccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 020091 154 EAAISLYRQAAVLGDPAA------------QPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWY 219 (331)
Q Consensus 154 ~~A~~~~~~a~~~~~~~~------------~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~ 219 (331)
++|..+|.+++..++... ..++++.++.+|++..+ +++.+.+..||.+|..---.+...++|..+.
T Consensus 324 ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l 403 (1018)
T KOG2002|consen 324 EKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVL 403 (1018)
T ss_pred HHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHH
Confidence 888888888887776663 67788888888888765 4778888888888875101123457888888
Q ss_pred HHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc-------CCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 020091 220 LRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-------GHGKAQLEHGLGLFTEGEMMKAVVYLELA 290 (331)
Q Consensus 220 ~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A 290 (331)
.++.+. .+..++..++.+|.. .|...++.+|..|.+. -.++..+++|..++..|++.+|...|..|
T Consensus 404 ~K~~~~~~~d~~a~l~laql~e~-----~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 404 GKVLEQTPVDSEAWLELAQLLEQ-----TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred HHHHhcccccHHHHHHHHHHHHh-----cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 888765 577888888888864 3666667777777632 34677888888888888888888888888
Q ss_pred HHc-----CCHH-------HHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 291 TRA-----GETA-------ADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 291 ~~~-----~~~~-------a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
... +... -.+|++.+++.+... ..|.+.+..++..+|.
T Consensus 479 ~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~--~~A~e~Yk~Ilkehp~ 528 (1018)
T KOG2002|consen 479 LGKLLEVANKDEGKSTNLTLKYNLARLLEELHDT--EVAEEMYKSILKEHPG 528 (1018)
T ss_pred hhhhhhhcCccccccchhHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHCch
Confidence 654 1122 377888888777554 4677778887777763
No 43
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=6.1e-12 Score=115.93 Aligned_cols=245 Identities=13% Similarity=0.071 Sum_probs=200.6
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-----CCHHHHHHH
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----GSTLAMVDA 143 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-----~~~~a~~~l 143 (331)
..++-..+...++.+-..++...++..+- ...-.-..||-+|..| + ...+|..+.++ ..+..|+.+
T Consensus 248 ~~~ad~~y~~c~f~~c~kit~~lle~dpf-h~~~~~~~ia~l~el~-----~---~n~Lf~lsh~LV~~yP~~a~sW~aV 318 (611)
T KOG1173|consen 248 AEKADRLYYGCRFKECLKITEELLEKDPF-HLPCLPLHIACLYELG-----K---SNKLFLLSHKLVDLYPSKALSWFAV 318 (611)
T ss_pred HHHHHHHHHcChHHHHHHHhHHHHhhCCC-CcchHHHHHHHHHHhc-----c---cchHHHHHHHHHHhCCCCCcchhhH
Confidence 45556678889999999999999998774 3445566788666663 3 34455555443 477889999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCC
Q 020091 144 GLMYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDF 210 (331)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~ 210 (331)
|..|...+++.+|..+|.||..+++..+ .++..++|+..|..|.+. |...-...+|.-|.. .+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~----t~ 394 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR----TN 394 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHH----hc
Confidence 9999999999999999999999888777 899999999999999986 777788899999976 78
Q ss_pred CHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc----CCH-----HHHHHHHHHHhccCC
Q 020091 211 NLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GHG-----KAQLEHGLGLFTEGE 279 (331)
Q Consensus 211 d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~-----~a~~~Lg~~~~~~~~ 279 (331)
++..|.++|.+|... .++..+..+|.+.+. .+.+.+|..||+.+... ++. ..+.+||.++.+.+.
T Consensus 395 n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~----~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIAPSDPLVLHELGVVAYT----YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred cHHHHHHHHHHHHhcCCCcchhhhhhhheeeh----HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence 999999999999764 889999999999876 55999999999999732 221 236799999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 280 MMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 280 ~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
+++|+.+|++|+...+.++...-+.++.....++++.|...+.+.+-..|.
T Consensus 471 ~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 471 YEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 999999999999987766666666666667778899999999997766664
No 44
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.48 E-value=4.2e-11 Score=115.69 Aligned_cols=242 Identities=13% Similarity=0.085 Sum_probs=176.8
Q ss_pred HHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHH
Q 020091 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAG 144 (331)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg 144 (331)
..+..+..++-.|++++|..+|...+++.+. ++.+++.||.||.+ .||.+++......|+..+ +.+-|..++
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~--~~~ay~tL~~IyEq----rGd~eK~l~~~llAAHL~p~d~e~W~~la 214 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQDPR--NPIAYYTLGEIYEQ----RGDIEKALNFWLLAAHLNPKDYELWKRLA 214 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc--chhhHHHHHHHHHH----cccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 3456666677889999999999999999774 79999999999999 899999999999999874 889999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHCCC-HH------HHHHHHHHHhcCC
Q 020091 145 LMYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIAGH-VR------AQYQLALCLHRGR 206 (331)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~~~-~~------a~~~lg~~y~~G~ 206 (331)
....+.|+.++|+-+|.+|+...|..- ..++...|...|.+...... ++ ..+..+..+..
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~-- 292 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT-- 292 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999988876 55677777777777655422 11 11111222211
Q ss_pred CCCCCHHHHHHHHHHHHH--------------------------------------------------------------
Q 020091 207 GVDFNLQEAARWYLRAAE-------------------------------------------------------------- 224 (331)
Q Consensus 207 g~~~d~~~A~~~~~~A~~-------------------------------------------------------------- 224 (331)
.++-+.|++.+..+..
T Consensus 293 --~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~ 370 (895)
T KOG2076|consen 293 --HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEV 370 (895)
T ss_pred --hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccC
Confidence 1122333333332221
Q ss_pred ----------------------------------------CCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc---
Q 020091 225 ----------------------------------------GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--- 261 (331)
Q Consensus 225 ----------------------------------------~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--- 261 (331)
..++.-++.++..|.+ ...+.+|+.+|......
T Consensus 371 ~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~----~~~~~~Al~~l~~i~~~~~~ 446 (895)
T KOG2076|consen 371 GKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTN----IGKYKEALRLLSPITNREGY 446 (895)
T ss_pred CCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHh----cccHHHHHHHHHHHhcCccc
Confidence 0123344556666644 34788888888888766
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhhhchhcHHHHHHHHHhh
Q 020091 262 GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADHVKNVILQQLSATSRDRAMLVVDSW 324 (331)
Q Consensus 262 ~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~--~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~ 324 (331)
++...++.+|.||...|.+++|+.+|++++.. ++.++...|+.++.++. +.++|.+.+...
T Consensus 447 ~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g--~~EkalEtL~~~ 509 (895)
T KOG2076|consen 447 QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLG--NHEKALETLEQI 509 (895)
T ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcC--CHHHHHHHHhcc
Confidence 45668889999999999999999999999875 56777777777776654 445777777664
No 45
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1e-11 Score=112.72 Aligned_cols=214 Identities=14% Similarity=0.114 Sum_probs=177.5
Q ss_pred HhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcC
Q 020091 73 AASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEM 150 (331)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~ 150 (331)
.-++-.|+...+..-+...+...+.. ...+..+|.+|.+ ..+.++-...|.+|.+.+ +++.++.-|.+++-.
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~~--~~lyI~~a~~y~d----~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL 407 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPAF--NSLYIKRAAAYAD----ENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLL 407 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCccc--chHHHHHHHHHhh----hhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHH
Confidence 34566788888877777666665543 3448889999999 899999999999999886 999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 020091 151 DKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAAR 217 (331)
Q Consensus 151 ~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~~A~~ 217 (331)
+++++|+.=|++++.++|... ....++++...|+.+.+. ..++.+...|.++.. ++++++|++
T Consensus 408 ~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD----qqqFd~A~k 483 (606)
T KOG0547|consen 408 QQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD----QQQFDKAVK 483 (606)
T ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh----HHhHHHHHH
Confidence 999999999999999988777 677888889999988874 789999999999987 899999999
Q ss_pred HHHHHHHCCCH------H--HHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC--HHHHHHHHHHHhccCCHHHHHHHH
Q 020091 218 WYLRAAEGGYV------R--AMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVVYL 287 (331)
Q Consensus 218 ~~~~A~~~~~~------~--a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~~~~~~~A~~~~ 287 (331)
.|.+|++.... . .+.+-|.+..+ -.+|+..|...+++|++.++ ..|+..||.+...+|+.++|+.+|
T Consensus 484 ~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q---wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielF 560 (606)
T KOG0547|consen 484 QYDKAIELEPREHLIIVNAAPLVHKALLVLQ---WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELF 560 (606)
T ss_pred HHHHHHhhccccccccccchhhhhhhHhhhc---hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999886432 2 33344444433 24699999999999999865 578899999999999999999999
Q ss_pred HHHHHcCCHHHH
Q 020091 288 ELATRAGETAAD 299 (331)
Q Consensus 288 ~~A~~~~~~~a~ 299 (331)
++++..--....
T Consensus 561 Eksa~lArt~~E 572 (606)
T KOG0547|consen 561 EKSAQLARTESE 572 (606)
T ss_pred HHHHHHHHhHHH
Confidence 999887544433
No 46
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=1.2e-11 Score=111.44 Aligned_cols=199 Identities=17% Similarity=0.100 Sum_probs=161.7
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--cCCCCC---
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAV--LGDPAA--- 171 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~~--- 171 (331)
-++.++.+-|.+.+. .||+++|.++|+.|+..+ ..++++++|..+...|+.++|+.+|.+.-. +++...
T Consensus 488 yn~~a~~nkgn~~f~----ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~q 563 (840)
T KOG2003|consen 488 YNAAALTNKGNIAFA----NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQ 563 (840)
T ss_pred cCHHHhhcCCceeee----cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 477888888888877 899999999999999876 778999999999999999999999987632 232222
Q ss_pred ------CccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcC
Q 020091 172 ------QPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFG 241 (331)
Q Consensus 172 ------~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g 241 (331)
...|..+|++||.++.. +++|..+..||.+|.+ .+|..+|++|+-..-.- -+....-+||..|..
T Consensus 564 ianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydq----egdksqafq~~ydsyryfp~nie~iewl~ayyid- 638 (840)
T KOG2003|consen 564 IANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQ----EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID- 638 (840)
T ss_pred HHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc----ccchhhhhhhhhhcccccCcchHHHHHHHHHHHh-
Confidence 67899999999999865 5899999999999987 88999999998877543 567778899999976
Q ss_pred CCccccHHHHHHHHHHHHHcCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhhh
Q 020091 242 EGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAADHVKNVILQQL 309 (331)
Q Consensus 242 ~g~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~--~~~a~~~l~~~~~~l 309 (331)
..-.++|+.||++|+-... ..-+..++.|+...|++++|+..|+..-+.- +.++..-|-.+-..+
T Consensus 639 ---tqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dl 707 (840)
T KOG2003|consen 639 ---TQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDL 707 (840)
T ss_pred ---hHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccc
Confidence 4477899999999987643 4555778999999999999999999987753 455555555544444
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.41 E-value=8.9e-13 Score=117.40 Aligned_cols=214 Identities=17% Similarity=0.110 Sum_probs=90.2
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC--------
Q 020091 104 LLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-------- 171 (331)
Q Consensus 104 ~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-------- 171 (331)
.+.++.++.. .+++++|.+.+++++.. +++..+..+|.+....+++++|+..|++.+..++...
T Consensus 11 ~l~~A~~~~~----~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~ 86 (280)
T PF13429_consen 11 ALRLARLLYQ----RGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQ 86 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccc----cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3467888888 89999999999765533 4777888999999999999999999999998876644
Q ss_pred --CccCHHHHHHHHHHHHHC-CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCc
Q 020091 172 --QPANAEEAVKLLYQASIA-GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GYVRAMYNTSLCYSFGEGL 244 (331)
Q Consensus 172 --~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~~~~a~~~lg~~y~~g~g~ 244 (331)
..+++++|+.+++++.+. +++..+..+..++.. .++++++...+.++... .++..+..+|.++..
T Consensus 87 l~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~---- 158 (280)
T PF13429_consen 87 LLQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYR----LGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ---- 158 (280)
T ss_dssp -------------------------------H-HHH----TT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH----
T ss_pred ccccccccccccccccccccccccchhhHHHHHHHH----HhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH----
Confidence 678899999998887664 556666666666765 68899999999997653 467788899999976
Q ss_pred cccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhhhchhcHHHHHHH
Q 020091 245 PLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAADHVKNVILQQLSATSRDRAMLV 320 (331)
Q Consensus 245 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~--~~~a~~~l~~~~~~l~~~~~~~a~~~ 320 (331)
.++.++|+.+|+++++. ++.++...|++++...|+.+++...++...... ++.-...++.++.. .++.++|...
T Consensus 159 ~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~--lg~~~~Al~~ 236 (280)
T PF13429_consen 159 LGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ--LGRYEEALEY 236 (280)
T ss_dssp CCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH--HT-HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc--cccccccccc
Confidence 34999999999999987 567888999999999999999777776665542 33334455555544 4567899999
Q ss_pred HHhhhcCCCCC
Q 020091 321 VDSWRAMPSLH 331 (331)
Q Consensus 321 ~~~~~~~~~~~ 331 (331)
+++....+|.+
T Consensus 237 ~~~~~~~~p~d 247 (280)
T PF13429_consen 237 LEKALKLNPDD 247 (280)
T ss_dssp HHHHHHHSTT-
T ss_pred ccccccccccc
Confidence 99998877753
No 48
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.39 E-value=2.9e-11 Score=113.86 Aligned_cols=207 Identities=17% Similarity=0.140 Sum_probs=158.5
Q ss_pred hccCCchHHHhHHHHHHHHHHhCCC---CC---HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-----C--C---H
Q 020091 74 ASFTLPQLRAASLVCKSWNDALRPL---RE---AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----G--S---T 137 (331)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~---~~---~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-----~--~---~ 137 (331)
.....|+++.|...|+..++...+. .+ +..+-.+|.+|.. .+++.+|+..|++|... | + +
T Consensus 208 ~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~----~~k~~eAv~ly~~AL~i~e~~~G~~h~~va 283 (508)
T KOG1840|consen 208 MYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRS----LGKYDEAVNLYEEALTIREEVFGEDHPAVA 283 (508)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 3456799999999999888874321 12 2334459999999 99999999999999864 3 3 3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC-----CC--------------CccCHHHHHHHHHHHHHC-------CC
Q 020091 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDP-----AA--------------QPANAEEAVKLLYQASIA-------GH 191 (331)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-----~~--------------~~~~~~~A~~~~~~a~~~-------~~ 191 (331)
.++.+||..|...|++++|..++++|+++-.. .. ..+.+++|+.+|+++.+. .+
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~ 363 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN 363 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence 56889999999999999999999999875222 11 678899999999988541 22
Q ss_pred ---HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHH
Q 020091 192 ---VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----------GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRA 258 (331)
Q Consensus 192 ---~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----------~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 258 (331)
+....+||.+|.. .+.+++|.++|++|+.. +......+||..|.+.. .+.+|...|..+
T Consensus 364 ~~~a~~~~nl~~l~~~----~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k----~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLK----MGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELK----KYEEAEQLFEEA 435 (508)
T ss_pred hHHHHHHHHHHHHHHH----hcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhc----ccchHHHHHHHH
Confidence 4567799999987 78899999999999863 23567889999997743 555555555554
Q ss_pred H------HcCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 020091 259 A------DCGH---GKAQLEHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 259 ~------~~~~---~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
. -.++ ...+.+|+.+|..+|++++|+.+.+++.+
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3 3333 34667999999999999999999998874
No 49
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=4.8e-10 Score=101.98 Aligned_cols=213 Identities=15% Similarity=0.077 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-------
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA------- 171 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~------- 171 (331)
+.++...|..++- .||.-.|.+-|.+++... ++.-+..+|.+|....+.++....|.+|.++++.++
T Consensus 326 A~al~~~gtF~fL----~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRg 401 (606)
T KOG0547|consen 326 AEALLLRGTFHFL----KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRG 401 (606)
T ss_pred HHHHHHhhhhhhh----cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHH
Confidence 6778888888877 999999999999999986 444488999999999999999999999999998887
Q ss_pred ----CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCC
Q 020091 172 ----QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEG 243 (331)
Q Consensus 172 ----~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g 243 (331)
..+++++|+.-|++++.. .+.-++..++-+..+ +..++++...|+.+... .-+..+...|.++..
T Consensus 402 Qm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr----~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD--- 474 (606)
T KOG0547|consen 402 QMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYR----QHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD--- 474 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh---
Confidence 789999999999998776 566777777766554 56799999999999875 778889999999976
Q ss_pred ccccHHHHHHHHHHHHHcCCH------HH--HHHHHHHHh-ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcH
Q 020091 244 LPLSHRQARKWMKRAADCGHG------KA--QLEHGLGLF-TEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSR 314 (331)
Q Consensus 244 ~~~~~~~A~~~~~~a~~~~~~------~a--~~~Lg~~~~-~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~ 314 (331)
..++++|.+.|.+|++.... .+ ..+-|.+.. -.+|+.+|+..+++|++.++.--.....+....+.++++
T Consensus 475 -qqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i 553 (606)
T KOG0547|consen 475 -QQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKI 553 (606)
T ss_pred -HHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhH
Confidence 55999999999999988543 22 222222222 257999999999999999986655566666667888999
Q ss_pred HHHHHHHHhhh
Q 020091 315 DRAMLVVDSWR 325 (331)
Q Consensus 315 ~~a~~~~~~~~ 325 (331)
++|+++|++-.
T Consensus 554 ~eAielFEksa 564 (606)
T KOG0547|consen 554 DEAIELFEKSA 564 (606)
T ss_pred HHHHHHHHHHH
Confidence 99999998843
No 50
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=7.6e-11 Score=109.13 Aligned_cols=212 Identities=14% Similarity=0.055 Sum_probs=149.2
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------
Q 020091 105 LRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA----------- 171 (331)
Q Consensus 105 ~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~----------- 171 (331)
|..|..+.. .|+..+|+-.|+.|+..+ +.+|+..||.++...++-..||..+++++++++.+-
T Consensus 289 f~eG~~lm~----nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSyt 364 (579)
T KOG1125|consen 289 FKEGCNLMK----NGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYT 364 (579)
T ss_pred HHHHHHHHh----cCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHh
Confidence 567888888 899999999999999986 999999999999999999999999999999987432
Q ss_pred CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCC-----C--CCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHhc
Q 020091 172 QPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRG-----V--DFNLQEAARWYLRAAEG----GYVRAMYNTSLCYSF 240 (331)
Q Consensus 172 ~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g-----~--~~d~~~A~~~~~~A~~~----~~~~a~~~lg~~y~~ 240 (331)
.++.-.+|+.++.+=+....+..+ +...-..+.. . ...+..-.++|..|+.. -+++.+..||.+|.-
T Consensus 365 Neg~q~~Al~~L~~Wi~~~p~y~~--l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 365 NEGLQNQALKMLDKWIRNKPKYVH--LVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL 442 (579)
T ss_pred hhhhHHHHHHHHHHHHHhCccchh--ccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc
Confidence 122222233222222211111111 1100001100 0 01122334455555433 478899999999964
Q ss_pred CCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhhhchhcHHH
Q 020091 241 GEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADHVKNVILQQLSATSRDR 316 (331)
Q Consensus 241 g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~--~~~~a~~~l~~~~~~l~~~~~~~ 316 (331)
.+.+++|+.+|+.|+.. .+...|+.||..+....+.++|+..|.+|++. ++..+.+|++.. .+..+..++
T Consensus 443 ----s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS--~mNlG~ykE 516 (579)
T KOG1125|consen 443 ----SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGIS--CMNLGAYKE 516 (579)
T ss_pred ----chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhh--hhhhhhHHH
Confidence 55999999999999877 45677889999999999999999999999987 667777776654 566777788
Q ss_pred HHHHHHhhhcCC
Q 020091 317 AMLVVDSWRAMP 328 (331)
Q Consensus 317 a~~~~~~~~~~~ 328 (331)
|..-+-+.+.++
T Consensus 517 A~~hlL~AL~mq 528 (579)
T KOG1125|consen 517 AVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHHHhh
Confidence 877777766544
No 51
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.32 E-value=1.7e-10 Score=97.10 Aligned_cols=120 Identities=11% Similarity=0.038 Sum_probs=97.7
Q ss_pred ccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccH
Q 020091 173 PANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSH 248 (331)
Q Consensus 173 ~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~ 248 (331)
..+.++++..+++++. ++++++++.||.+|.. .+++++|+..|++|+.. +++..+..+|.++....| ....
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~----~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g-~~~~ 126 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLW----RNDYDNALLAYRQALQLRGENAELYAALATVLYYQAG-QHMT 126 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-CCCc
Confidence 4444555555555443 3799999999999987 88999999999999875 789999999997533222 1247
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHH
Q 020091 249 RQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA 297 (331)
Q Consensus 249 ~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~ 297 (331)
++|...+++++.. .++.+++.||..++..|++++|+.+|+++++..+++
T Consensus 127 ~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 127 PQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 9999999999987 578999999999999999999999999999986654
No 52
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.30 E-value=8e-10 Score=95.71 Aligned_cols=185 Identities=15% Similarity=-0.016 Sum_probs=123.0
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCc
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--ST---LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQP 173 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~---~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 173 (331)
..+..++.+|..+.. .+++++|+..|++++... ++ .+++.+|.+|...+++++|+..|+++++..+...
T Consensus 31 ~~~~~~~~~g~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~-- 104 (235)
T TIGR03302 31 WPAEELYEEAKEALD----SGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP-- 104 (235)
T ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC--
Confidence 467889999999988 899999999999998763 33 6789999999999999999999999998766321
Q ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCC----CCCCHHHHHHHHHHHHHC--CCHHH---HHHHHHHHhcCCCc
Q 020091 174 ANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRG----VDFNLQEAARWYLRAAEG--GYVRA---MYNTSLCYSFGEGL 244 (331)
Q Consensus 174 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g----~~~d~~~A~~~~~~A~~~--~~~~a---~~~lg~~y~~g~g~ 244 (331)
..+.+++.+|.++..-.+ ..+++++|++.|++++.. ++..+ +..++.++.
T Consensus 105 ----------------~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----- 163 (235)
T TIGR03302 105 ----------------DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----- 163 (235)
T ss_pred ----------------chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-----
Confidence 123478888888865210 136788999999999875 23222 222222210
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHhhhchhcHHHHHH
Q 020091 245 PLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE-----TAADHVKNVILQQLSATSRDRAML 319 (331)
Q Consensus 245 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~-----~~a~~~l~~~~~~l~~~~~~~a~~ 319 (331)
........+|.+|+..|++++|+..|+++++..+ ..+..+++.++.. .++.++|..
T Consensus 164 -----------------~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~--lg~~~~A~~ 224 (235)
T TIGR03302 164 -----------------RLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLK--LGLKDLAQD 224 (235)
T ss_pred -----------------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHH--cCCHHHHHH
Confidence 0112234666667777777777777777766521 2344454444443 444566666
Q ss_pred HHHhhhcCCC
Q 020091 320 VVDSWRAMPS 329 (331)
Q Consensus 320 ~~~~~~~~~~ 329 (331)
.++++...+|
T Consensus 225 ~~~~l~~~~~ 234 (235)
T TIGR03302 225 AAAVLGANYP 234 (235)
T ss_pred HHHHHHhhCC
Confidence 6666665555
No 53
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.30 E-value=4.9e-09 Score=105.18 Aligned_cols=244 Identities=10% Similarity=-0.007 Sum_probs=163.2
Q ss_pred hccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhcCCC
Q 020091 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMVDAGLMYWEMDK 152 (331)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~~~~~~~ 152 (331)
.....|++.+|+.++.+.++..|+ ++.+++.|+.+|.. .++.++|++.++++.... .......++.++...++
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP~--n~~~l~gLa~~y~~----~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~ 184 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDPT--NPDLISGMIMTQAD----AGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDR 184 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHhh----cCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcch
Confidence 445668888888888888887665 57777777788877 788888888888887764 22222444555544566
Q ss_pred HHHHHHHHHHHHHcCCCCC-------------------------------------------------------------
Q 020091 153 KEAAISLYRQAAVLGDPAA------------------------------------------------------------- 171 (331)
Q Consensus 153 ~~~A~~~~~~a~~~~~~~~------------------------------------------------------------- 171 (331)
..+|+..|+++++..|...
T Consensus 185 ~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~ 264 (822)
T PRK14574 185 NYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERF 264 (822)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 6669999999988877665
Q ss_pred --------------------------------------------------------------------------CccCHH
Q 020091 172 --------------------------------------------------------------------------QPANAE 177 (331)
Q Consensus 172 --------------------------------------------------------------------------~~~~~~ 177 (331)
..+.++
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 334444
Q ss_pred HHHHHHHHHHHCC------C--HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-----------------CCHHHHH
Q 020091 178 EAVKLLYQASIAG------H--VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-----------------GYVRAMY 232 (331)
Q Consensus 178 ~A~~~~~~a~~~~------~--~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~-----------------~~~~a~~ 232 (331)
+|+.+|+.++... . ......|-..|.. .+++++|..++.+..+. +...+..
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld----~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~ 420 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE----SEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQT 420 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh----cccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHH
Confidence 5555555443321 0 1111223333333 44555555555555431 1123344
Q ss_pred HHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc
Q 020091 233 NTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLS 310 (331)
Q Consensus 233 ~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~ 310 (331)
.++.++.. .++..+|.+.+++.+.. ++...+..+|.++...|...+|..+++.+....+.+.....+.+...+.
T Consensus 421 l~a~~~~~----~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~ 496 (822)
T PRK14574 421 LLVQSLVA----LNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMA 496 (822)
T ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHh
Confidence 44554433 34788888888887766 6777888888888889999999999988777777666666777777788
Q ss_pred hhcHHHHHHHHHhhhcCCCCC
Q 020091 311 ATSRDRAMLVVDSWRAMPSLH 331 (331)
Q Consensus 311 ~~~~~~a~~~~~~~~~~~~~~ 331 (331)
.++.+++..+.+++.++.|+|
T Consensus 497 l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 497 LQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred hhhHHHHHHHHHHHHhhCCCc
Confidence 888899998998888888875
No 54
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.28 E-value=7.9e-10 Score=104.26 Aligned_cols=210 Identities=17% Similarity=0.109 Sum_probs=162.7
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-------CCHH--H-HHHHHHHHhcCCCHHHHHHHHHHHHHc-----
Q 020091 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-------GSTL--A-MVDAGLMYWEMDKKEAAISLYRQAAVL----- 166 (331)
Q Consensus 102 ~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-------~~~~--a-~~~lg~~~~~~~~~~~A~~~~~~a~~~----- 166 (331)
.++..|+.+|.. .+++++|+.+++.|++. .++. . +.++|.+|...+++.+|+..|++|+..
T Consensus 200 ~~~~~La~~y~~----~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 200 RTLRNLAEMYAV----QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred HHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 357779999999 99999999999999987 3433 3 345999999999999999999999865
Q ss_pred CCCCC--------------CccCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 020091 167 GDPAA--------------QPANAEEAVKLLYQASIA-------GH---VRAQYQLALCLHRGRGVDFNLQEAARWYLRA 222 (331)
Q Consensus 167 ~~~~~--------------~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A 222 (331)
|.... ..+++.+|..++++|++- .+ +..+.+++.++.. .+.+++|..+|+++
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~----~~~~Eea~~l~q~a 351 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQS----MNEYEEAKKLLQKA 351 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHH----hcchhHHHHHHHHH
Confidence 32222 779999999999998651 22 3456678888876 78899999999999
Q ss_pred HHC-------CC---HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc-----C-----CHHHHHHHHHHHhccCCHHH
Q 020091 223 AEG-------GY---VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-----G-----HGKAQLEHGLGLFTEGEMMK 282 (331)
Q Consensus 223 ~~~-------~~---~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~-----~~~a~~~Lg~~~~~~~~~~~ 282 (331)
.+. .+ +.-..+||.+|.. .+.+.+|.++|++|+.. + ......+||..|...+++.+
T Consensus 352 l~i~~~~~g~~~~~~a~~~~nl~~l~~~----~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~ 427 (508)
T KOG1840|consen 352 LKIYLDAPGEDNVNLAKIYANLAELYLK----MGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEE 427 (508)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHH----hcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccch
Confidence 652 22 4457799999976 55999999999999864 1 13456789999999999888
Q ss_pred HHHHHHHHHHc------C---CHHHHHHHHHHHhhhchhcHHHHHHHHHhhh
Q 020091 283 AVVYLELATRA------G---ETAADHVKNVILQQLSATSRDRAMLVVDSWR 325 (331)
Q Consensus 283 A~~~~~~A~~~------~---~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~ 325 (331)
|...|.++..+ + -.....||+.++..+. +.++|.++.+++.
T Consensus 428 a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g--~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 428 AEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQG--NYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcc--cHHHHHHHHHHHH
Confidence 88888877764 2 2446778888887664 5568887777654
No 55
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.27 E-value=6.4e-09 Score=97.25 Aligned_cols=203 Identities=13% Similarity=-0.017 Sum_probs=130.7
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC--------------
Q 020091 108 GKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-------------- 171 (331)
Q Consensus 108 G~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-------------- 171 (331)
+.++.. .+++++|...+++..+.. ++.+...++.+|...|+.++|+..+.+.........
T Consensus 160 a~l~l~----~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l 235 (398)
T PRK10747 160 VRIQLA----RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGL 235 (398)
T ss_pred HHHHHH----CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 455555 455555555555555442 555555555555555555555555555544332211
Q ss_pred -----CccCHHHHHHHHHHH--HHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHhcCCC
Q 020091 172 -----QPANAEEAVKLLYQA--SIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-YVRAMYNTSLCYSFGEG 243 (331)
Q Consensus 172 -----~~~~~~~A~~~~~~a--~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~-~~~a~~~lg~~y~~g~g 243 (331)
...+.+....+++.. ....++.+...++..+.. .++.++|...++++.+.. +.......+.+.
T Consensus 236 ~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~----~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~----- 306 (398)
T PRK10747 236 MDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIE----CDDHDTAQQIILDGLKRQYDERLVLLIPRLK----- 306 (398)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCHHHHHHHhhcc-----
Confidence 000001111111111 112577788888888876 789999999999998853 443333444432
Q ss_pred ccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHhhhchhcHHHHHHH
Q 020091 244 LPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAAD-HVKNVILQQLSATSRDRAMLV 320 (331)
Q Consensus 244 ~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~-~~l~~~~~~l~~~~~~~a~~~ 320 (331)
..+.++++...++..+. +++...+.+|.++...+++++|..+|+++++..+.... ..++.++... ++.++|.+.
T Consensus 307 -~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~--g~~~~A~~~ 383 (398)
T PRK10747 307 -TNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRL--HKPEEAAAM 383 (398)
T ss_pred -CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHH
Confidence 24889999999988776 66788899999999999999999999999998765544 6777777654 556788888
Q ss_pred HHhhhc
Q 020091 321 VDSWRA 326 (331)
Q Consensus 321 ~~~~~~ 326 (331)
+++-+.
T Consensus 384 ~~~~l~ 389 (398)
T PRK10747 384 RRDGLM 389 (398)
T ss_pred HHHHHh
Confidence 888654
No 56
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.27 E-value=9.1e-11 Score=104.63 Aligned_cols=221 Identities=22% Similarity=0.214 Sum_probs=138.0
Q ss_pred ccCCchHHHhHHHHHHHHHHh----CCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh----CC----CHHHHHH
Q 020091 75 SFTLPQLRAASLVCKSWNDAL----RPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA----RG----STLAMVD 142 (331)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~----~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~----~~----~~~a~~~ 142 (331)
++-.++|.+|++....-+..+ -..|.+.+.-+||.++.- .|.+++|+.+-.+-++ +| ...|+||
T Consensus 65 yfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv----~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYN 140 (639)
T KOG1130|consen 65 YFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKV----KGAFDEALTCCFRHLDFARELGDRVLESRALYN 140 (639)
T ss_pred hhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhh----hcccchHHHHHHHHhHHHHHHhHHHhhhHHHhh
Confidence 344555555555444332222 223566666666666666 5666666555544332 22 3456666
Q ss_pred HHHHHhcCC--------------------CHHHHHHHHHHHHHc----CCCC-------------CCccCHHHHHHHHHH
Q 020091 143 AGLMYWEMD--------------------KKEAAISLYRQAAVL----GDPA-------------AQPANAEEAVKLLYQ 185 (331)
Q Consensus 143 lg~~~~~~~--------------------~~~~A~~~~~~a~~~----~~~~-------------~~~~~~~~A~~~~~~ 185 (331)
||.+|...| .++.|+++|..-+++ ++.. -..+|+..|+..-+.
T Consensus 141 lgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~ 220 (639)
T KOG1130|consen 141 LGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKL 220 (639)
T ss_pred hhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHH
Confidence 666665532 234445555443332 1111 045666666554333
Q ss_pred ----HHHCCC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH----HCCC----HHHHHHHHHHHhcCCCccccHH
Q 020091 186 ----ASIAGH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAA----EGGY----VRAMYNTSLCYSFGEGLPLSHR 249 (331)
Q Consensus 186 ----a~~~~~----~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~----~~~~----~~a~~~lg~~y~~g~g~~~~~~ 249 (331)
|-+.|+ -.|+.|||++|.- .++++.|+++|+++. +.|+ +.++|.||..|.- .++++
T Consensus 221 RL~ia~efGDrAaeRRA~sNlgN~hif----lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl----l~e~~ 292 (639)
T KOG1130|consen 221 RLEIAQEFGDRAAERRAHSNLGNCHIF----LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL----LKEVQ 292 (639)
T ss_pred HHHHHHHhhhHHHHHHhhcccchhhhh----hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH----HHHHH
Confidence 223344 4578899999976 789999999999874 4454 6779999999976 56899
Q ss_pred HHHHHHHHHHH--------cCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----C----CHHHHHHHHHHHh
Q 020091 250 QARKWMKRAAD--------CGHGKAQLEHGLGLFTEGEMMKAVVYLELATRA----G----ETAADHVKNVILQ 307 (331)
Q Consensus 250 ~A~~~~~~a~~--------~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~----~----~~~a~~~l~~~~~ 307 (331)
+|+.|+.+=+. .|...+|+.||..|...|+.++|+.|.++..+. + ...+..|+.....
T Consensus 293 kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~ 366 (639)
T KOG1130|consen 293 KAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLIL 366 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHH
Confidence 99999987332 266789999999999999999999998887753 2 3345555555443
No 57
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.25 E-value=7.3e-09 Score=97.27 Aligned_cols=242 Identities=12% Similarity=-0.005 Sum_probs=158.3
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHH
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLM 146 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~ 146 (331)
+..+......|+++.|...+.+..+..++.+ .......+.++.. .+++++|...++...+.. ++.++..++.+
T Consensus 122 llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~-l~~~~~~a~l~l~----~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~ 196 (409)
T TIGR00540 122 IKAAEAAQQRGDEARANQHLEEAAELAGNDN-ILVEIARTRILLA----QNELHAARHGVDKLLEMAPRHKEVLKLAEEA 196 (409)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc-hHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4444445666788877666666555444321 1233334777777 788888888888777763 77788888888
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCCCc---------------cCHHHHHHHHHHHHH------CCCHHHHHHHHHHHhcC
Q 020091 147 YWEMDKKEAAISLYRQAAVLGDPAAQP---------------ANAEEAVKLLYQASI------AGHVRAQYQLALCLHRG 205 (331)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~~~~~~~~---------------~~~~~A~~~~~~a~~------~~~~~a~~~lg~~y~~G 205 (331)
+...||.++|+..+.+..+.+...... ...+++...+.++.+ ..++.....++..+..
T Consensus 197 ~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~- 275 (409)
T TIGR00540 197 YIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLID- 275 (409)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHH-
Confidence 888888888888888877664332200 001111112222222 1477888899998876
Q ss_pred CCCCCCHHHHHHHHHHHHHC--CCHHHH--HHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCH--HHHHHHHHHHhcc
Q 020091 206 RGVDFNLQEAARWYLRAAEG--GYVRAM--YNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHG--KAQLEHGLGLFTE 277 (331)
Q Consensus 206 ~g~~~d~~~A~~~~~~A~~~--~~~~a~--~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~--~a~~~Lg~~~~~~ 277 (331)
.+++++|.+.++++++. ++.... ......... +.+..++...++++.+. +++ .....||++++..
T Consensus 276 ---~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~----~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~ 348 (409)
T TIGR00540 276 ---CDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLK----PEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKH 348 (409)
T ss_pred ---CCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcC----CCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHc
Confidence 78999999999999985 333211 112122222 34788999999998877 566 5667899999999
Q ss_pred CCHHHHHHHHHH--HHHcCC-HHHHHHHHHHHhhhchhcHHHHHHHHHhhh
Q 020091 278 GEMMKAVVYLEL--ATRAGE-TAADHVKNVILQQLSATSRDRAMLVVDSWR 325 (331)
Q Consensus 278 ~~~~~A~~~~~~--A~~~~~-~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~ 325 (331)
|++++|..+|++ +.+..+ ......++.++.++ ++.++|.+++++.+
T Consensus 349 ~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~--g~~~~A~~~~~~~l 397 (409)
T TIGR00540 349 GEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA--GDKAEAAAMRQDSL 397 (409)
T ss_pred ccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Confidence 999999999994 655432 33344666666555 55678888888743
No 58
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.24 E-value=3.2e-09 Score=92.20 Aligned_cols=239 Identities=15% Similarity=0.080 Sum_probs=180.4
Q ss_pred cCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC------CHHHHHHHHHHHhc
Q 020091 76 FTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG------STLAMVDAGLMYWE 149 (331)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~------~~~a~~~lg~~~~~ 149 (331)
+-+.+.+.|+..+.+..+..+ ..-++...||.+|.+ .|..++|+..-+-..+.- -..|.+.||.-|..
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d~--~t~e~~ltLGnLfRs----RGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQEDP--ETFEAHLTLGNLFRS----RGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred HhhcCcchHHHHHHHHHhcCc--hhhHHHHHHHHHHHh----cchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Confidence 344566778777777777543 467889999999999 899999999988777653 23578899999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHCCCHH-----HHH--HHHHHHhcCCCCCCC
Q 020091 150 MDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIAGHVR-----AQY--QLALCLHRGRGVDFN 211 (331)
Q Consensus 150 ~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~~~~~-----a~~--~lg~~y~~G~g~~~d 211 (331)
-|=++.|...|...++.+.-.. ..++.+||+..-++.+..+.-. |+| .|+..+.. ..|
T Consensus 120 aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~----~~~ 195 (389)
T COG2956 120 AGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA----SSD 195 (389)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh----hhh
Confidence 9999999999999887543221 7888999999988877764333 322 45555543 788
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCHHHHHHH
Q 020091 212 LQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH---GKAQLEHGLGLFTEGEMMKAVVY 286 (331)
Q Consensus 212 ~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~~~~~~~~~~A~~~ 286 (331)
.++|..++.+|++. ....+-..+|.++.. .| ++++|++.++...+++. +.....|-.+|...|+.++...|
T Consensus 196 ~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~-~g---~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 196 VDRARELLKKALQADKKCVRASIILGRVELA-KG---DYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred HHHHHHHHHHHHhhCccceehhhhhhHHHHh-cc---chHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999876 567788899999964 44 99999999999999865 56778899999999999999999
Q ss_pred HHHHHHcCC-HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 287 LELATRAGE-TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 287 ~~~A~~~~~-~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
+.++.+... ..+...+..+..... -.+.|...+.+-++++|+
T Consensus 272 L~~~~~~~~g~~~~l~l~~lie~~~--G~~~Aq~~l~~Ql~r~Pt 314 (389)
T COG2956 272 LRRAMETNTGADAELMLADLIELQE--GIDAAQAYLTRQLRRKPT 314 (389)
T ss_pred HHHHHHccCCccHHHHHHHHHHHhh--ChHHHHHHHHHHHhhCCc
Confidence 999998754 344444444444333 334566666665566664
No 59
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.24 E-value=5.8e-10 Score=89.03 Aligned_cols=110 Identities=15% Similarity=0.066 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
+|...+.+|..+.. .|++++|+.+|++++... ++.+++++|.++...|++++|+.+|++++.+++
T Consensus 23 ~p~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p--------- 89 (144)
T PRK15359 23 DPETVYASGYASWQ----EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA--------- 89 (144)
T ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---------
Confidence 34456677888888 888999999999888774 888888899988888888888888888888776
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q 020091 178 EAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCY 238 (331)
Q Consensus 178 ~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y 238 (331)
+++.+++++|.++.. .+++++|+..|++|+.. +++..+.+.|.+.
T Consensus 90 ------------~~~~a~~~lg~~l~~----~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 90 ------------SHPEPVYQTGVCLKM----MGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred ------------CCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 588888999988886 78889999999988765 6677776666654
No 60
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.23 E-value=2.4e-09 Score=92.69 Aligned_cols=183 Identities=9% Similarity=-0.050 Sum_probs=125.0
Q ss_pred CCChHHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CH-
Q 020091 62 ASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLR-EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--ST- 137 (331)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~- 137 (331)
...+...+..+...+..|++.+|...+...++..++.. ...+++.+|.+|.. .+++++|+..|+++++.. ++
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~----~~~~~~A~~~~~~~l~~~p~~~~ 105 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK----SGDYAEAIAAADRFIRLHPNHPD 105 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHCcCCCc
Confidence 34455667777888899999999999988888776543 23688999999999 899999999999999763 33
Q ss_pred --HHHHHHHHHHhcC--------CCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCC
Q 020091 138 --LAMVDAGLMYWEM--------DKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRG 207 (331)
Q Consensus 138 --~a~~~lg~~~~~~--------~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g 207 (331)
.+++.+|.++... +++++|+..|++++...+... .. ..+...++.++..
T Consensus 106 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~---------------~~a~~~~~~~~~~--- 164 (235)
T TIGR03302 106 ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE---YA---------------PDAKKRMDYLRNR--- 164 (235)
T ss_pred hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh---hH---------------HHHHHHHHHHHHH---
Confidence 4789999999875 567777777777776654311 00 1122222222110
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhccCCHHH
Q 020091 208 VDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-----HGKAQLEHGLGLFTEGEMMK 282 (331)
Q Consensus 208 ~~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~~~~~~~~~~ 282 (331)
. ......+|.+|.. .+++.+|+.+|+++++.. .+.+++.+|.++...|++++
T Consensus 165 ----~---------------~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~ 221 (235)
T TIGR03302 165 ----L---------------AGKELYVARFYLK----RGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDL 221 (235)
T ss_pred ----H---------------HHHHHHHHHHHHH----cCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHH
Confidence 0 1122456666654 337777777777776651 24677888888888888888
Q ss_pred HHHHHHHHHH
Q 020091 283 AVVYLELATR 292 (331)
Q Consensus 283 A~~~~~~A~~ 292 (331)
|..+++....
T Consensus 222 A~~~~~~l~~ 231 (235)
T TIGR03302 222 AQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHh
Confidence 8887776654
No 61
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.20 E-value=6.7e-08 Score=99.67 Aligned_cols=240 Identities=10% Similarity=-0.018 Sum_probs=110.0
Q ss_pred CCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCH
Q 020091 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKK 153 (331)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~ 153 (331)
..|+++.|..++....+... ..+..++..|-..|.. .+++++|++.|......| +...+..|-..|.+.|+.
T Consensus 484 k~G~vd~A~~vf~eM~~~Gv-~PdvvTynaLI~gy~k----~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~ 558 (1060)
T PLN03218 484 KSGKVDAMFEVFHEMVNAGV-EANVHTFGALIDGCAR----AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHH----CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 44556666555444433322 1245555555555555 566666666666555544 344455555555555555
Q ss_pred HHHHHHHHHHHHcCC---CCC-----------CccCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhc-C----------
Q 020091 154 EAAISLYRQAAVLGD---PAA-----------QPANAEEAVKLLYQASIAG---HVRAQYQLALCLHR-G---------- 205 (331)
Q Consensus 154 ~~A~~~~~~a~~~~~---~~~-----------~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~-G---------- 205 (331)
++|..+|.+....+. ++. ..+++++|..+|++..+.| +...+..+...|.. |
T Consensus 559 deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~ 638 (1060)
T PLN03218 559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYD 638 (1060)
T ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 555555555543210 110 4445555555555544433 23334444444433 0
Q ss_pred --------------------CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc-
Q 020091 206 --------------------RGVDFNLQEAARWYLRAAEGG---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC- 261 (331)
Q Consensus 206 --------------------~g~~~d~~~A~~~~~~A~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~- 261 (331)
.+..+++++|.+.|....+.| +...+..|..+|.. .++.++|...|++....
T Consensus 639 eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k----~G~~eeA~~lf~eM~~~g 714 (1060)
T PLN03218 639 DMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN----AKNWKKALELYEDIKSIK 714 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcC
Confidence 000344444444444444433 33444444444433 22555555555554332
Q ss_pred --CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHhhhchhcHHHHHHHHHhhh
Q 020091 262 --GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE-TAADHVKNVILQQLSATSRDRAMLVVDSWR 325 (331)
Q Consensus 262 --~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~-~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~ 325 (331)
.+...+..|...|...|++++|+.+|++..+.|- ++.......+......++.++|..++.+.+
T Consensus 715 ~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~ 781 (1060)
T PLN03218 715 LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK 781 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2334444455555555555555555555544431 111222222223333445555555555543
No 62
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.20 E-value=6.4e-08 Score=99.78 Aligned_cols=237 Identities=11% Similarity=-0.038 Sum_probs=163.2
Q ss_pred ccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCC
Q 020091 75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMD 151 (331)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~ 151 (331)
....|+++.|..++....+.... .+...+..|-..|.. .++.++|.+.|++..+.| +..++..|-..|.+.|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~-pD~~tynsLI~~y~k----~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLK-ADCKLYTTLISTCAK----SGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh----CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 45679999998888776665443 477888888888888 899999999999999876 6788889999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCC------------CccCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHhcCCCCCCCHHH
Q 020091 152 KKEAAISLYRQAAVLGDPAA------------QPANAEEAVKLLYQASIA-----GHVRAQYQLALCLHRGRGVDFNLQE 214 (331)
Q Consensus 152 ~~~~A~~~~~~a~~~~~~~~------------~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~y~~G~g~~~d~~~ 214 (331)
+.++|+.+|.+....+.... ..+++++|..+|.+.... .+...+..|-.+|.. .+++++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k----~G~lde 597 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN----AGQVDR 597 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH----CCCHHH
Confidence 99999999999887654333 788999999999998652 255667777777765 678999
Q ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccCCHHHHHHHHH
Q 020091 215 AARWYLRAAEGG---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG---HGKAQLEHGLGLFTEGEMMKAVVYLE 288 (331)
Q Consensus 215 A~~~~~~A~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~~~~~~~~~~A~~~~~ 288 (331)
|.+.|+...+.| +...+..+...|.+ .++.++|...|......| +...+..|...|...|++++|+..++
T Consensus 598 A~elf~~M~e~gi~p~~~tynsLI~ay~k----~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQ----KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999888765 45566666666654 336666666666665543 23344455555555666666666666
Q ss_pred HHHHcCC-HHHHHHHHHHHhhhchhcHHHHHHHHHhh
Q 020091 289 LATRAGE-TAADHVKNVILQQLSATSRDRAMLVVDSW 324 (331)
Q Consensus 289 ~A~~~~~-~~a~~~l~~~~~~l~~~~~~~a~~~~~~~ 324 (331)
...+.|. ++.......+......++.++|.+++++.
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM 710 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 6555442 11122222222233344445555555544
No 63
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.18 E-value=2.6e-08 Score=100.02 Aligned_cols=256 Identities=9% Similarity=-0.047 Sum_probs=174.7
Q ss_pred hHHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHH
Q 020091 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVD 142 (331)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~ 142 (331)
+......+...+..|++..|+..+.+.++..+. ++.+.+.+..++.. .++.++|+.++++++.-. ...++..
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~--~~~av~dll~l~~~----~G~~~~A~~~~eka~~p~n~~~~~lla 107 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPL--QSGQVDDWLQIAGW----AGRDQEVIDVYERYQSSMNISSRGLAS 107 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCcc--chhhHHHHHHHHHH----cCCcHHHHHHHHHhccCCCCCHHHHHH
Confidence 445677777889999999999888888887664 33334467777766 799999999999999654 4445555
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCC
Q 020091 143 AGLMYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFN 211 (331)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d 211 (331)
+|.++...|++++|+.+|+++++..+... ..++.++|+..++++....-. ....++..|... + .++
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~-~~~~l~layL~~-~-~~~ 184 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPT-VQNYMTLSYLNR-A-TDR 184 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc-hHHHHHHHHHHH-h-cch
Confidence 58899999999999999999999988776 678888899888888765322 222255555431 1 455
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHhc-C-----------------------------------------------
Q 020091 212 LQEAARWYLRAAEG--GYVRAMYNTSLCYSF-G----------------------------------------------- 241 (331)
Q Consensus 212 ~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~-g----------------------------------------------- 241 (331)
..+|++.|+++++. ++......+-..+.. |
T Consensus 185 ~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~ 264 (822)
T PRK14574 185 NYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERF 264 (822)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 65688888888764 222222222111100 0
Q ss_pred ----------------C---------------------CccccHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccCCHH
Q 020091 242 ----------------E---------------------GLPLSHRQARKWMKRAADCG---HGKAQLEHGLGLFTEGEMM 281 (331)
Q Consensus 242 ----------------~---------------------g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~~~~~~~~~ 281 (331)
. ...+++.+++..|+..-..+ +.-+...+|..|...+..+
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 0 00123334444444433233 2345667888888899999
Q ss_pred HHHHHHHHHHHcC------CHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCC
Q 020091 282 KAVVYLELATRAG------ETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 329 (331)
Q Consensus 282 ~A~~~~~~A~~~~------~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~ 329 (331)
+|...|+.++... +.+.....++++..++.++.++|..++++++...|
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 9999999997753 22333346788999999999999999999987555
No 64
>PLN02789 farnesyltranstransferase
Probab=99.18 E-value=2.2e-08 Score=90.27 Aligned_cols=201 Identities=9% Similarity=-0.112 Sum_probs=153.9
Q ss_pred CCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCH
Q 020091 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRK-NLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKK 153 (331)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~-~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~ 153 (331)
..+...+|+..+.+.++..|+ +..+++..|.++.. .+ ++++++.++.+++..+ +..++++.+.++...++.
T Consensus 49 ~~e~serAL~lt~~aI~lnP~--~ytaW~~R~~iL~~----L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPG--NYTVWHFRRLCLEA----LDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCch--hHHHHHHHHHHHHH----cchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCch
Confidence 456778998888888887664 78888889988877 45 6899999999998765 778899999888776653
Q ss_pred --HHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHH
Q 020091 154 --EAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVR 229 (331)
Q Consensus 154 --~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~ 229 (331)
++++.++.++++.++ .+..|+.+.|.++.. .++++++++++.++++. .+..
T Consensus 123 ~~~~el~~~~kal~~dp---------------------kNy~AW~~R~w~l~~----l~~~~eeL~~~~~~I~~d~~N~s 177 (320)
T PLN02789 123 AANKELEFTRKILSLDA---------------------KNYHAWSHRQWVLRT----LGGWEDELEYCHQLLEEDVRNNS 177 (320)
T ss_pred hhHHHHHHHHHHHHhCc---------------------ccHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHCCCchh
Confidence 667777778777765 588899999998876 67799999999999875 6788
Q ss_pred HHHHHHHHHhcC---CCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcC--CHHH
Q 020091 230 AMYNTSLCYSFG---EGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAG--ETAA 298 (331)
Q Consensus 230 a~~~lg~~y~~g---~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~~~~~A~~~~~~A~~~~--~~~a 298 (331)
+++..|.++... .+.....++++.+..+++.. .+..+++.++.++.. .++..+|..++.++...+ +..|
T Consensus 178 AW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~a 257 (320)
T PLN02789 178 AWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFA 257 (320)
T ss_pred HHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHH
Confidence 899999887553 22233456788888888876 567888888888877 345677888888877653 4556
Q ss_pred HHHHHHHHhh
Q 020091 299 DHVKNVILQQ 308 (331)
Q Consensus 299 ~~~l~~~~~~ 308 (331)
...+..++..
T Consensus 258 l~~l~d~~~~ 267 (320)
T PLN02789 258 LSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHh
Confidence 6666666654
No 65
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.17 E-value=2.9e-10 Score=101.46 Aligned_cols=239 Identities=18% Similarity=0.090 Sum_probs=171.8
Q ss_pred HhccCCchHHHhHHHHHHHHHHhCCC-C-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH--------hCCCHHHHHH
Q 020091 73 AASFTLPQLRAASLVCKSWNDALRPL-R-EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGA--------ARGSTLAMVD 142 (331)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~--------~~~~~~a~~~ 142 (331)
-.+...|+...-+..++..++..-+. . -...+..||..|+. .+||++|++|-.--+ ..|.+.+.-|
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfy----L~DY~kAl~yH~hDltlar~lgdklGEAKssgN 100 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFY----LKDYEKALKYHTHDLTLARLLGDKLGEAKSSGN 100 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhh----HhhHHHHHhhhhhhHHHHHHhcchhcccccccc
Confidence 34667788887766665555543221 0 24468889999999 999999999866332 2367788899
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHc----CCCCC---------------------------------CccCHHHHHHHHHH
Q 020091 143 AGLMYWEMDKKEAAISLYRQAAVL----GDPAA---------------------------------QPANAEEAVKLLYQ 185 (331)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~a~~~----~~~~~---------------------------------~~~~~~~A~~~~~~ 185 (331)
||+.+...|++++|+.++.+-+++ |+... +...++.|+++|..
T Consensus 101 LGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~e 180 (639)
T KOG1130|consen 101 LGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYME 180 (639)
T ss_pred ccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHH
Confidence 999999999999999998876543 21111 44556777777776
Q ss_pred HHH----CCCH----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH----CCC----HHHHHHHHHHHhcCCCccccHH
Q 020091 186 ASI----AGHV----RAQYQLALCLHRGRGVDFNLQEAARWYLRAAE----GGY----VRAMYNTSLCYSFGEGLPLSHR 249 (331)
Q Consensus 186 a~~----~~~~----~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~----~~~----~~a~~~lg~~y~~g~g~~~~~~ 249 (331)
-++ .|+. .++-+||+.|.- .+|++.|+.+-+.-++ -|+ -.|..+||.++.- ..+++
T Consensus 181 NL~l~~~lgDr~aqGRa~GnLGNTyYl----LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif----lg~fe 252 (639)
T KOG1130|consen 181 NLELSEKLGDRLAQGRAYGNLGNTYYL----LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF----LGNFE 252 (639)
T ss_pred HHHHHHHhhhHHhhcchhcccCceeee----eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh----hcccH
Confidence 543 3443 355677777763 8999999988776433 355 3567899999965 55999
Q ss_pred HHHHHHHHHH----HcCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHH--------cCCHHHHHHHHHHHhhhchhc
Q 020091 250 QARKWMKRAA----DCGH----GKAQLEHGLGLFTEGEMMKAVVYLELATR--------AGETAADHVKNVILQQLSATS 313 (331)
Q Consensus 250 ~A~~~~~~a~----~~~~----~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~--------~~~~~a~~~l~~~~~~l~~~~ 313 (331)
.|+++|+++. +.|+ ...+|.||..|.-..++++|+.|..+-+. +|...++..++..+..+-.
T Consensus 253 ~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~-- 330 (639)
T KOG1130|consen 253 LAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE-- 330 (639)
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh--
Confidence 9999999864 4465 46789999999999999999999876543 3678889888888876644
Q ss_pred HHHHHHHHHhhh
Q 020091 314 RDRAMLVVDSWR 325 (331)
Q Consensus 314 ~~~a~~~~~~~~ 325 (331)
.++|+..+..-+
T Consensus 331 h~kAl~fae~hl 342 (639)
T KOG1130|consen 331 HRKALYFAELHL 342 (639)
T ss_pred HHHHHHHHHHHH
Confidence 456766655533
No 66
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.16 E-value=2.1e-09 Score=85.85 Aligned_cols=118 Identities=13% Similarity=0.007 Sum_probs=96.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHH
Q 020091 180 VKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKR 257 (331)
Q Consensus 180 ~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 257 (331)
..+|++++.. +|...+.+|..+.. .+++++|+.+|++++.. .+..+++++|.++.. .+++++|+.+|.+
T Consensus 13 ~~~~~~al~~-~p~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~y~~ 83 (144)
T PRK15359 13 EDILKQLLSV-DPETVYASGYASWQ----EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM----LKEYTTAINFYGH 83 (144)
T ss_pred HHHHHHHHHc-CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----HhhHHHHHHHHHH
Confidence 3456666655 34457788998876 88999999999999876 678999999999976 5599999999999
Q ss_pred HHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCH--HHHHHHHHHH
Q 020091 258 AADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET--AADHVKNVIL 306 (331)
Q Consensus 258 a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~--~a~~~l~~~~ 306 (331)
++.. +++.+++++|.++...|++++|+..|++|++..+. ....+.+.+.
T Consensus 84 Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 84 ALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 9987 67899999999999999999999999999987654 4444444443
No 67
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.11 E-value=4.8e-08 Score=85.03 Aligned_cols=200 Identities=17% Similarity=0.075 Sum_probs=155.1
Q ss_pred CCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC---------------CccCHHHHH
Q 020091 118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA---------------QPANAEEAV 180 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~~~A~ 180 (331)
..+.++|+..|...++.. ..++.+.||++|.+.|..+.||..-+...+..+-.. ..+-++.|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 789999999999998865 678899999999999999999999888776644333 667788899
Q ss_pred HHHHHHHHCC-C-HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHH-------HHHHHHhcCCCccccHHHH
Q 020091 181 KLLYQASIAG-H-VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMY-------NTSLCYSFGEGLPLSHRQA 251 (331)
Q Consensus 181 ~~~~~a~~~~-~-~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~-------~lg~~y~~g~g~~~~~~~A 251 (331)
..|...++.+ . ..|.-.|-.+|.. .+++.+|++.-++.+..+...-.. .|+..+.. ..|.++|
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~----treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~----~~~~d~A 199 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQA----TREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA----SSDVDRA 199 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh----hhhHHHH
Confidence 9999988853 3 5678889999986 899999999999988876544333 44444433 5699999
Q ss_pred HHHHHHHHHcC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHhhhchhcHHHHHHHHHhhhc
Q 020091 252 RKWMKRAADCG--HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET---AADHVKNVILQQLSATSRDRAMLVVDSWRA 326 (331)
Q Consensus 252 ~~~~~~a~~~~--~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~---~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~ 326 (331)
+.++.+|.+.+ ...+-..||.++...|++++|++.++++.+.++. .....|...+.++ ++.++....+.+..+
T Consensus 200 ~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~l--g~~~~~~~fL~~~~~ 277 (389)
T COG2956 200 RELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQL--GKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHH
Confidence 99999998874 5678889999999999999999999999998763 2333333444433 445566666655544
Q ss_pred C
Q 020091 327 M 327 (331)
Q Consensus 327 ~ 327 (331)
.
T Consensus 278 ~ 278 (389)
T COG2956 278 T 278 (389)
T ss_pred c
Confidence 3
No 68
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.08 E-value=5.8e-08 Score=97.45 Aligned_cols=207 Identities=13% Similarity=-0.041 Sum_probs=122.7
Q ss_pred hccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcC
Q 020091 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEM 150 (331)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~ 150 (331)
.....|++.+|..++........-..+..++..+-..+.. .++.+.|.+.+......| ++..+..|..+|.+.
T Consensus 96 ~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~----~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~ 171 (697)
T PLN03081 96 KLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIA----LKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC 171 (697)
T ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcC
Confidence 3456688888887775444332223456666666666666 677888888887777665 455666777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCC---------CccCHHHHHHHHHHHHHCCC------------------------------
Q 020091 151 DKKEAAISLYRQAAVLGDPAA---------QPANAEEAVKLLYQASIAGH------------------------------ 191 (331)
Q Consensus 151 ~~~~~A~~~~~~a~~~~~~~~---------~~~~~~~A~~~~~~a~~~~~------------------------------ 191 (331)
|+.++|...|.+..+.+ ... ..+++++|+.+|++..+.|.
T Consensus 172 g~~~~A~~lf~~m~~~~-~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~ 250 (697)
T PLN03081 172 GMLIDARRLFDEMPERN-LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCV 250 (697)
T ss_pred CCHHHHHHHHhcCCCCC-eeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 77777777776653210 011 55677777777776654331
Q ss_pred --------HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC-
Q 020091 192 --------VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG- 262 (331)
Q Consensus 192 --------~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~- 262 (331)
..++..|-.+|.. .++.++|.+.|.+..+ .+..++..+...|.. .++.++|...|++....|
T Consensus 251 ~~~g~~~d~~~~n~Li~~y~k----~g~~~~A~~vf~~m~~-~~~vt~n~li~~y~~----~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 251 LKTGVVGDTFVSCALIDMYSK----CGDIEDARCVFDGMPE-KTTVAWNSMLAGYAL----HGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHhCCCccceeHHHHHHHHHH----CCCHHHHHHHHHhCCC-CChhHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCC
Confidence 1122233333433 4566677666665432 355566666666644 336677777776665543
Q ss_pred --CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 020091 263 --HGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 294 (331)
Q Consensus 263 --~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~ 294 (331)
+...+..+...+...|++++|...+....+.|
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g 355 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 34445555555666666666666666666554
No 69
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.08 E-value=1.1e-07 Score=88.85 Aligned_cols=246 Identities=8% Similarity=-0.028 Sum_probs=129.4
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCCC-CCHHHHHHHH-HHHhcCCCCCCCHHHHHHHHHHHHhCC-CH-HHH-HHH
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRPL-REAMVLLRWG-KRFKHGRGVRKNLDKALDSFLKGAARG-ST-LAM-VDA 143 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~a~~~LG-~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~-~a~-~~l 143 (331)
+......+..|++..|. +.....++. .++...+.++ .+... .++++.|.++|.+|.+.. +. .+. ...
T Consensus 88 ~~~gl~a~~eGd~~~A~----k~l~~~~~~~~~p~l~~llaA~aA~~----~g~~~~A~~~l~~A~~~~~~~~~~~~l~~ 159 (398)
T PRK10747 88 TEQALLKLAEGDYQQVE----KLMTRNADHAEQPVVNYLLAAEAAQQ----RGDEARANQHLERAAELADNDQLPVEITR 159 (398)
T ss_pred HHHHHHHHhCCCHHHHH----HHHHHHHhcccchHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 33444455677777774 333333332 2345555553 33355 677888888888777653 22 222 234
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHCC--CHHHHH------HHHHHHhc
Q 020091 144 GLMYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIAG--HVRAQY------QLALCLHR 204 (331)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~~--~~~a~~------~lg~~y~~ 204 (331)
+.++...|++++|+..+++..+..|... ..++.++|+..+.+..+.. ++.... .++.+-..
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6777777888888888887777766443 4455555555555554432 111111 01111100
Q ss_pred CCCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCCHH
Q 020091 205 GRGVDFNLQEAARWYLRAA--EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-HGKAQLEHGLGLFTEGEMM 281 (331)
Q Consensus 205 G~g~~~d~~~A~~~~~~A~--~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~~~~~~~~~ 281 (331)
. ...+.+....+++... ..+++.+...++..+.. .++.++|...++++.... ++.....++. ...++.+
T Consensus 240 ~--~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~----~g~~~~A~~~L~~~l~~~~~~~l~~l~~~--l~~~~~~ 311 (398)
T PRK10747 240 M--ADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIE----CDDHDTAQQIILDGLKRQYDERLVLLIPR--LKTNNPE 311 (398)
T ss_pred H--HhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCChH
Confidence 0 0122222223222221 12455566666666644 336677777776666542 2222222222 2346667
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 282 KAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 282 ~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
+++...++..+..+.++...+......+..++..+|.+.+++..+..|+
T Consensus 312 ~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 312 QLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD 360 (398)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 7777777666666555555555555556666666777777776666554
No 70
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.07 E-value=6.5e-09 Score=87.49 Aligned_cols=119 Identities=16% Similarity=0.085 Sum_probs=92.9
Q ss_pred CCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHH
Q 020091 118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQ 195 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~ 195 (331)
.++.++++..|++++..+ ++++++.||.+|...+++++|+..|++++.+.+ +++.++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P---------------------~~~~~~ 110 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG---------------------ENAELY 110 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------------------CCHHHH
Confidence 577788888888888764 888888888888888888888888888888876 478888
Q ss_pred HHHHHHH-hc-CCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCH
Q 020091 196 YQLALCL-HR-GRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHG 264 (331)
Q Consensus 196 ~~lg~~y-~~-G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~ 264 (331)
.++|.++ .. | ..++++|...++++++. ++..+++++|..+.. .+++++|+.+|+++++...+
T Consensus 111 ~~lA~aL~~~~g---~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~----~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 111 AALATVLYYQAG---QHMTPQTREMIDKALALDANEVTALMLLASDAFM----QADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHhcC---CCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC
Confidence 8888864 33 2 22368888888888765 678888888888866 44888888888888877443
No 71
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.07 E-value=5.7e-08 Score=89.33 Aligned_cols=186 Identities=12% Similarity=-0.046 Sum_probs=127.5
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-
Q 020091 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA- 171 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-----~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~- 171 (331)
+..+.++..+|.++.. .++.+.|...+.++... +..+..+..|.++...+++++|+.+++++++..|...
T Consensus 3 p~~~~a~~~~a~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~ 78 (355)
T cd05804 3 PDFALGHAAAALLLLL----GGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLL 78 (355)
T ss_pred CccHHHHHHHHHHHHh----cCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH
Confidence 4466777777777766 46666666666665543 2344556667777777777777777777776654332
Q ss_pred -------------CccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHH
Q 020091 172 -------------QPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNT 234 (331)
Q Consensus 172 -------------~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~l 234 (331)
..+....+...+..... .+...+...+|.++.. .+++++|+..++++++. +++.++..+
T Consensus 79 a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~----~G~~~~A~~~~~~al~~~p~~~~~~~~l 154 (355)
T cd05804 79 ALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEE----AGQYDRAEEAARRALELNPDDAWAVHAV 154 (355)
T ss_pred HHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 01112222222222111 2345667788888886 78899999999999876 567788999
Q ss_pred HHHHhcCCCccccHHHHHHHHHHHHHcCC--H----HHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 020091 235 SLCYSFGEGLPLSHRQARKWMKRAADCGH--G----KAQLEHGLGLFTEGEMMKAVVYLELATRAGE 295 (331)
Q Consensus 235 g~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~----~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~ 295 (331)
|.+|.. .+++++|..++.++..... + ..+..+|.++...|++++|+.+|+++....+
T Consensus 155 a~i~~~----~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 155 AHVLEM----QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHH----cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 999976 4499999999999987632 2 2456799999999999999999999975543
No 72
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.06 E-value=8.5e-08 Score=96.25 Aligned_cols=234 Identities=10% Similarity=0.003 Sum_probs=156.9
Q ss_pred CCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCH
Q 020091 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKK 153 (331)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~ 153 (331)
+.|++++|..++ +.... .+..++..|...|.. .++.++|++.|++..+.| +..++..+...+.+.|+.
T Consensus 271 k~g~~~~A~~vf----~~m~~-~~~vt~n~li~~y~~----~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~ 341 (697)
T PLN03081 271 KCGDIEDARCVF----DGMPE-KTTVAWNSMLAGYAL----HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL 341 (697)
T ss_pred HCCCHHHHHHHH----HhCCC-CChhHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccch
Confidence 457777775444 33332 477788888888888 789999999998887766 566777888888888888
Q ss_pred HHHHHHHHHHHHcCCCCC------------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 020091 154 EAAISLYRQAAVLGDPAA------------QPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLR 221 (331)
Q Consensus 154 ~~A~~~~~~a~~~~~~~~------------~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~ 221 (331)
++|.+.+....+.+.... ..+++++|...|.+..+. +..++..|...|.. .++.++|++.|++
T Consensus 342 ~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~-d~~t~n~lI~~y~~----~G~~~~A~~lf~~ 416 (697)
T PLN03081 342 EHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK-NLISWNALIAGYGN----HGRGTKAVEMFER 416 (697)
T ss_pred HHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC-CeeeHHHHHHHHHH----cCCHHHHHHHHHH
Confidence 889888888888764433 578888888888876554 56677777777765 6778888888888
Q ss_pred HHHCC---CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc-C---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 020091 222 AAEGG---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-G---HGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 294 (331)
Q Consensus 222 A~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~ 294 (331)
..+.| +...+..+-..+.+ .++.++|..+|....+. | +...+..+...|...|++++|...+++.--.
T Consensus 417 M~~~g~~Pd~~T~~~ll~a~~~----~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~- 491 (697)
T PLN03081 417 MIAEGVAPNHVTFLAVLSACRY----SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFK- 491 (697)
T ss_pred HHHhCCCCCHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCC-
Confidence 87664 33344444444433 33778888888777653 2 2345566777777778888887777654211
Q ss_pred CHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 295 ETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 295 ~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
++...+-..+......++.+.+...++++.+..|.
T Consensus 492 -p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~ 526 (697)
T PLN03081 492 -PTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE 526 (697)
T ss_pred -CCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC
Confidence 12222333333344555666666666666655553
No 73
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.05 E-value=2.6e-08 Score=98.27 Aligned_cols=130 Identities=12% Similarity=0.067 Sum_probs=110.5
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHH
Q 020091 135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQE 214 (331)
Q Consensus 135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~ 214 (331)
.+++++++||.+....|++++|..+++.++++.| ++..|..+++.++.. .+.+++
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P---------------------d~~~a~~~~a~~L~~----~~~~ee 138 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFP---------------------DSSEAFILMLRGVKR----QQGIEA 138 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC---------------------CcHHHHHHHHHHHHH----hccHHH
Confidence 3688999999999999999999999999888877 588899999988876 778999
Q ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 020091 215 AARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELA 290 (331)
Q Consensus 215 A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A 290 (331)
|+.++++++.. .++.+++.+|.++.. .| .+++|...|++++.. ++..++..+|.++...|+.++|...|++|
T Consensus 139 A~~~~~~~l~~~p~~~~~~~~~a~~l~~-~g---~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 139 GRAEIELYFSGGSSSAREILLEAKSWDE-IG---QSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHH-hc---chHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998765 678888999998854 34 899999999998865 45788899999999999999999999999
Q ss_pred HHc
Q 020091 291 TRA 293 (331)
Q Consensus 291 ~~~ 293 (331)
++.
T Consensus 215 ~~~ 217 (694)
T PRK15179 215 LDA 217 (694)
T ss_pred HHh
Confidence 875
No 74
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.04 E-value=1.4e-07 Score=88.67 Aligned_cols=253 Identities=9% Similarity=-0.064 Sum_probs=158.2
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-CCH--HHHHHHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GST--LAMVDAG 144 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~--~a~~~lg 144 (331)
.+..+...+..|++..|.....+..+..+ .....+...|.++.. .+++++|.++|.++.+. ++. .+....+
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~--~~~~~~llaA~aa~~----~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a 160 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAA--EPVLNLIKAAEAAQQ----RGDEARANQHLEEAAELAGNDNILVEIART 160 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCcCchHHHHHHH
Confidence 35556667888999999766655444432 234555666888888 89999999999998875 333 3445568
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhcCCCCCCC
Q 020091 145 LMYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDFN 211 (331)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~G~g~~~d 211 (331)
.++...|++++|...+++..+..|... ..+|+++|+..+.+..+.+ ++.....+-.....|.-....
T Consensus 161 ~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~ 240 (409)
T TIGR00540 161 RILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAM 240 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999877655 6777777777777776652 222211111111000000111
Q ss_pred HHHHHHHHHHHHHC------CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHH----HHHHHHHHhccCCHH
Q 020091 212 LQEAARWYLRAAEG------GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKA----QLEHGLGLFTEGEMM 281 (331)
Q Consensus 212 ~~~A~~~~~~A~~~------~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a----~~~Lg~~~~~~~~~~ 281 (331)
.+++...+.++.+. +++.....++..+.. .+++++|...++++.+....+. ..-........++.+
T Consensus 241 ~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~----~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 241 ADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLID----CDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChH
Confidence 22233344444332 366777777777754 3478888888888877532222 122233334457778
Q ss_pred HHHHHHHHHHHcCCHHH--HHHHHHHHhhhchhcHHHHHHHHH--hhhcCCCC
Q 020091 282 KAVVYLELATRAGETAA--DHVKNVILQQLSATSRDRAMLVVD--SWRAMPSL 330 (331)
Q Consensus 282 ~A~~~~~~A~~~~~~~a--~~~l~~~~~~l~~~~~~~a~~~~~--~~~~~~~~ 330 (331)
++...++++.+..+.++ ..........+..++..+|.+.++ ...+.+|+
T Consensus 317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~ 369 (409)
T TIGR00540 317 KLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD 369 (409)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC
Confidence 88888888887755444 555555555566777788888888 34455554
No 75
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.03 E-value=1.6e-07 Score=91.37 Aligned_cols=222 Identities=15% Similarity=0.078 Sum_probs=160.2
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC--------
Q 020091 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-------- 171 (331)
Q Consensus 102 ~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-------- 171 (331)
..+...+...+- .||++.|.+.+...+.+. ++.+++.||.+|...||.+++..+...|+.+++...
T Consensus 140 ~~ll~eAN~lfa----rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~lad 215 (895)
T KOG2076|consen 140 RQLLGEANNLFA----RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLAD 215 (895)
T ss_pred HHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 345555555555 799999999999999986 899999999999999999999999999999988776
Q ss_pred ---CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC-HHH------HHHHHHHHh
Q 020091 172 ---QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY-VRA------MYNTSLCYS 239 (331)
Q Consensus 172 ---~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~-~~a------~~~lg~~y~ 239 (331)
..+++.+|.-||.+|+.. .+.+-.++-..+|.+ .|+..+|...|.+...... .+. -...+..+.
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~----~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQK----TGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH----hChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 788899999999999876 456777788888887 7889999999999877533 000 001011110
Q ss_pred c-----------------CCC--c-------------cccHHHHHHHHHHHHH---------------------------
Q 020091 240 F-----------------GEG--L-------------PLSHRQARKWMKRAAD--------------------------- 260 (331)
Q Consensus 240 ~-----------------g~g--~-------------~~~~~~A~~~~~~a~~--------------------------- 260 (331)
. +.+ . .+.+++|......-..
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~ 371 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVG 371 (895)
T ss_pred HhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCC
Confidence 0 000 0 0111111111111100
Q ss_pred ----------------------------------c-----CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCHHHHH
Q 020091 261 ----------------------------------C-----GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA-GETAADH 300 (331)
Q Consensus 261 ----------------------------------~-----~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~-~~~~a~~ 300 (331)
. ..++-++.++..|.+.|++.+|+.+|..+... ++..+..
T Consensus 372 ~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v 451 (895)
T KOG2076|consen 372 KELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV 451 (895)
T ss_pred CCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh
Confidence 0 11233567888899999999999999999875 4455666
Q ss_pred HHHHHHhhhchhcHHHHHHHHHhhhcCCCCC
Q 020091 301 VKNVILQQLSATSRDRAMLVVDSWRAMPSLH 331 (331)
Q Consensus 301 ~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~~ 331 (331)
++......+..++.++|++.+.+++...|.|
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~ 482 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLILAPDN 482 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCCCc
Confidence 6666677777788899999999999999986
No 76
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.99 E-value=9.2e-09 Score=81.56 Aligned_cols=97 Identities=18% Similarity=0.030 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
.-+..|.+|..+.+ .|+++.|...|+..+..+ ++..+++||.++...|++++|+..|.+|+.+++
T Consensus 34 ~l~~lY~~A~~ly~----~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~--------- 100 (157)
T PRK15363 34 PLNTLYRYAMQLME----VKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI--------- 100 (157)
T ss_pred HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---------
Confidence 46778899988888 899999999999988776 788899999999999999999999999998876
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 178 EAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 178 ~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
+++.+++++|.||.. .++.+.|.+.|+.|+..
T Consensus 101 ------------ddp~~~~~ag~c~L~----lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 101 ------------DAPQAPWAAAECYLA----CDNVCYAIKALKAVVRI 132 (157)
T ss_pred ------------CCchHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 689999999999987 78899999999999764
No 77
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=3e-07 Score=84.99 Aligned_cols=93 Identities=14% Similarity=0.077 Sum_probs=47.6
Q ss_pred HHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHh
Q 020091 71 KIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYW 148 (331)
Q Consensus 71 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~ 148 (331)
+....+..|++++|+..|...+...+. |...+.+-.-+|.. .++|++|..--.+..+.. -+.++..+|..+.
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~l~p~--nhvlySnrsaa~a~----~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIMLSPT--NHVLYSNRSAAYAS----LGSYEKALKDATKTRRLNPDWAKGYSRKGAALF 81 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHccCCC--ccchhcchHHHHHH----HhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH
Confidence 334455556666665555555544432 33333334444444 455555555555555543 3445555555555
Q ss_pred cCCCHHHHHHHHHHHHHcCCC
Q 020091 149 EMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 149 ~~~~~~~A~~~~~~a~~~~~~ 169 (331)
-.|++++|+..|.+.++..+.
T Consensus 82 ~lg~~~eA~~ay~~GL~~d~~ 102 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEKDPS 102 (539)
T ss_pred hcccHHHHHHHHHHHhhcCCc
Confidence 555555555555555544433
No 78
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.96 E-value=7.6e-08 Score=95.04 Aligned_cols=129 Identities=12% Similarity=-0.007 Sum_probs=118.7
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
++++++.||.+..+ .+.+++|..+++.+++. ++..+..+++.++.+.+.+++|+.++++++...+
T Consensus 85 ~~~~~~~La~i~~~----~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p--------- 151 (694)
T PRK15179 85 TELFQVLVARALEA----AHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS--------- 151 (694)
T ss_pred cHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC---------
Confidence 69999999999999 99999999999999987 5999999999999999999999999999999877
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHH
Q 020091 178 EAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWM 255 (331)
Q Consensus 178 ~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 255 (331)
.++.+++.+|.++.. .+++++|+..|++++.. +++.++.++|.++.. ..+.++|...|
T Consensus 152 ------------~~~~~~~~~a~~l~~----~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~----~G~~~~A~~~~ 211 (694)
T PRK15179 152 ------------SSAREILLEAKSWDE----IGQSEQADACFERLSRQHPEFENGYVGWAQSLTR----RGALWRARDVL 211 (694)
T ss_pred ------------CCHHHHHHHHHHHHH----hcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHH
Confidence 589999999999987 78899999999999965 568999999999965 34999999999
Q ss_pred HHHHHc
Q 020091 256 KRAADC 261 (331)
Q Consensus 256 ~~a~~~ 261 (331)
++|++.
T Consensus 212 ~~a~~~ 217 (694)
T PRK15179 212 QAGLDA 217 (694)
T ss_pred HHHHHh
Confidence 999887
No 79
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.93 E-value=1.1e-07 Score=95.02 Aligned_cols=197 Identities=10% Similarity=0.055 Sum_probs=140.0
Q ss_pred hHHHHHHHHhcc-CCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHH-----------------H
Q 020091 65 PFDVLNKIAASF-TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKAL-----------------D 126 (331)
Q Consensus 65 ~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~-----------------~ 126 (331)
.++.+..+...+ ..++++++..+|...++..++ ...+++.+|.+|++ .+++.++. +
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~--~i~~yy~~G~l~~q----~~~~~~~~lv~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK--SISALYISGILSLS----RRPLNDSNLLNLIDSFSQNLKWAIVE 103 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc--ceehHHHHHHHHHh----hcchhhhhhhhhhhhcccccchhHHH
Confidence 345555555555 889999999999987777654 68899999999887 45544443 3
Q ss_pred HHHHHH-hCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Q 020091 127 SFLKGA-ARG-STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHR 204 (331)
Q Consensus 127 ~~~~A~-~~~-~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~ 204 (331)
+|...+ +.+ +..|++.||.||.+.|+.++|+..|+++++.++ .++.++.++|..|..
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~---------------------~n~~aLNn~AY~~ae 162 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADR---------------------DNPEIVKKLATSYEE 162 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc---------------------ccHHHHHHHHHHHHH
Confidence 333222 222 447999999999999999999999999999986 699999999999986
Q ss_pred CCCCCCCHHHHHHHHHHHHHC-----CCHHHHH-HHHHHHhcCCCccccHHHHHHHHHHHHHc-C---CHHHHHHHHHHH
Q 020091 205 GRGVDFNLQEAARWYLRAAEG-----GYVRAMY-NTSLCYSFGEGLPLSHRQARKWMKRAADC-G---HGKAQLEHGLGL 274 (331)
Q Consensus 205 G~g~~~d~~~A~~~~~~A~~~-----~~~~a~~-~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~~ 274 (331)
. |.++|++++.+|+.. .+....- +...|-.. +.+.+.-....++.... + ..+.+.-|=.+|
T Consensus 163 ----~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~----~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y 233 (906)
T PRK14720 163 ----E-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYN----SDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPY 233 (906)
T ss_pred ----h-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcC----cccchHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 5 999999999999864 1222211 22223222 33455545555544433 2 134445566778
Q ss_pred hccCCHHHHHHHHHHHHHcCCHH
Q 020091 275 FTEGEMMKAVVYLELATRAGETA 297 (331)
Q Consensus 275 ~~~~~~~~A~~~~~~A~~~~~~~ 297 (331)
...+++++++.+++.+++..+.+
T Consensus 234 ~~~~~~~~~i~iLK~iL~~~~~n 256 (906)
T PRK14720 234 KALEDWDEVIYILKKILEHDNKN 256 (906)
T ss_pred hhhhhhhHHHHHHHHHHhcCCcc
Confidence 88999999999999999886543
No 80
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.93 E-value=2.3e-08 Score=78.60 Aligned_cols=99 Identities=20% Similarity=0.111 Sum_probs=78.6
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCH
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANA 176 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 176 (331)
.++.+.+.+|..+.. .+++++|..+|++++..+ ++.+++++|.++...+++++|+.+|++++..++
T Consensus 15 ~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-------- 82 (135)
T TIGR02552 15 EQLEQIYALAYNLYQ----QGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-------- 82 (135)
T ss_pred hhHHHHHHHHHHHHH----cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------
Confidence 356778888888887 788888888888887753 778888888888888888888888888877765
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC
Q 020091 177 EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG 226 (331)
Q Consensus 177 ~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~ 226 (331)
.++..++++|.+|.. .+++++|+.+|+++++.+
T Consensus 83 -------------~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 83 -------------DDPRPYFHAAECLLA----LGEPESALKALDLAIEIC 115 (135)
T ss_pred -------------CChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhc
Confidence 477888888888876 678888888888887753
No 81
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.93 E-value=2.7e-08 Score=78.89 Aligned_cols=95 Identities=13% Similarity=0.065 Sum_probs=84.9
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGL 145 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~ 145 (331)
+..-+..++..|++++|..++.-.....+ .++..+++||.++.. .+++++|+..|.+|+.. ++|.+++++|.
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp--~~~~y~~gLG~~~Q~----~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDA--WSFDYWFRLGECCQA----QKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 45566678899999999988887777755 489999999999999 99999999999999876 59999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCC
Q 020091 146 MYWEMDKKEAAISLYRQAAVLGD 168 (331)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~~~ 168 (331)
|+...|+.+.|+..|+.++....
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999998753
No 82
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.92 E-value=3.2e-08 Score=77.82 Aligned_cols=100 Identities=19% Similarity=0.116 Sum_probs=88.7
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHH
Q 020091 190 GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGK 265 (331)
Q Consensus 190 ~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~ 265 (331)
++..+.+.+|.++.. .+++++|.++|++++.. ++..+++.+|.+|.. .+++++|..+|++++.. .++.
T Consensus 15 ~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~p~~~~ 86 (135)
T TIGR02552 15 EQLEQIYALAYNLYQ----QGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM----LKEYEEAIDAYALAAALDPDDPR 86 (135)
T ss_pred hhHHHHHHHHHHHHH----cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCChH
Confidence 578889999999986 78999999999999774 678899999999976 45899999999999877 4578
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCHH
Q 020091 266 AQLEHGLGLFTEGEMMKAVVYLELATRAGETA 297 (331)
Q Consensus 266 a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~ 297 (331)
.++.+|.++...|++++|+.+|+++++.++..
T Consensus 87 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 87 PYFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 89999999999999999999999999987644
No 83
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.92 E-value=2.3e-07 Score=82.69 Aligned_cols=120 Identities=16% Similarity=0.083 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC--
Q 020091 194 AQYQLALCLHRGRGVD-FNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-- 262 (331)
Q Consensus 194 a~~~lg~~y~~G~g~~-~d~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-- 262 (331)
.+.++|.+|.. . +|+++|+++|++|++. |. ......+|.++.. .+++++|+..|++.+..-
T Consensus 116 ~~~~lA~~ye~----~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~----l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 116 CLKELAEIYEE----QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR----LGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp HHHHHHHHHCC----TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHhhc
Confidence 34455555554 3 4555555555555442 21 1223344444433 225555555555554320
Q ss_pred C----H---HHHHHHHHHHhccCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHhhhchhcHHHHHHHH
Q 020091 263 H----G---KAQLEHGLGLFTEGEMMKAVVYLELATRAG----ETAADHVKNVILQQLSATSRDRAMLVV 321 (331)
Q Consensus 263 ~----~---~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~----~~~a~~~l~~~~~~l~~~~~~~a~~~~ 321 (331)
+ . ..++..+.|+...||...|...+++..... ...-...+..++.-...+|.+.-...+
T Consensus 188 ~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av 257 (282)
T PF14938_consen 188 NNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAV 257 (282)
T ss_dssp HCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHC
T ss_pred ccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 0 0 112334444455555555555555554332 122233344444444444443333333
No 84
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.91 E-value=1.3e-07 Score=84.28 Aligned_cols=55 Identities=27% Similarity=0.329 Sum_probs=26.5
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 020091 106 RWGKRFKHGRGVRKNLDKALDSFLKGAAR----GS----TLAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (331)
Q Consensus 106 ~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (331)
..|.+|.. .+++++|.+.|.+|++. ++ ..++...+.+|... ++++|+.+|++|++
T Consensus 40 ~Aa~~fk~----~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~ 102 (282)
T PF14938_consen 40 KAANCFKL----AKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIE 102 (282)
T ss_dssp HHHHHHHH----TT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHH
T ss_pred HHHHHHHH----HhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHH
Confidence 34555555 56666666666666532 21 12333444444333 55555555555543
No 85
>PLN02789 farnesyltranstransferase
Probab=98.90 E-value=5.9e-07 Score=81.06 Aligned_cols=185 Identities=9% Similarity=-0.069 Sum_probs=143.7
Q ss_pred CCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHH
Q 020091 118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMD-KKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRA 194 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a 194 (331)
.+..++|+..+.+++..+ +..++...|.++...+ ++++++.++.+++..++ .+..+
T Consensus 50 ~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np---------------------knyqa 108 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP---------------------KNYQI 108 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC---------------------cchHH
Confidence 468889999999999875 8889999999998877 67889998888888766 57889
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHH
Q 020091 195 QYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEH 270 (331)
Q Consensus 195 ~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~L 270 (331)
+++.+.++..- | ....++++.++.++++. .+..++...|+++.. .+++++|+.++.++++. .+..++++.
T Consensus 109 W~~R~~~l~~l-~-~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~----l~~~~eeL~~~~~~I~~d~~N~sAW~~R 182 (320)
T PLN02789 109 WHHRRWLAEKL-G-PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRT----LGGWEDELEYCHQLLEEDVRNNSAWNQR 182 (320)
T ss_pred hHHHHHHHHHc-C-chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHCCCchhHHHHH
Confidence 99999888650 1 11247889999999876 678999999999976 44899999999999986 578899999
Q ss_pred HHHHhcc---CC----HHHHHHHHHHHHHc--CCHHHHHHHHHHHhhhch--hcHHHHHHHHHhhhcCCC
Q 020091 271 GLGLFTE---GE----MMKAVVYLELATRA--GETAADHVKNVILQQLSA--TSRDRAMLVVDSWRAMPS 329 (331)
Q Consensus 271 g~~~~~~---~~----~~~A~~~~~~A~~~--~~~~a~~~l~~~~~~l~~--~~~~~a~~~~~~~~~~~~ 329 (331)
+.++... +. .++++.+..+++.. .+..+...++.++..... ....++...+.++....|
T Consensus 183 ~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~ 252 (320)
T PLN02789 183 YFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS 252 (320)
T ss_pred HHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC
Confidence 9988765 22 35789999999976 467788888888766211 233457777777655444
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.90 E-value=3.8e-07 Score=83.82 Aligned_cols=81 Identities=11% Similarity=-0.055 Sum_probs=60.3
Q ss_pred ccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC------HHHHHHHHHHHhcCCCc
Q 020091 173 PANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY------VRAMYNTSLCYSFGEGL 244 (331)
Q Consensus 173 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~------~~a~~~lg~~y~~g~g~ 244 (331)
.+++++|+..++++++. +++.++..+|.+|.. .+++++|+.++.+++.... ...+..++.++..
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~----~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~---- 198 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM----QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE---- 198 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH----
Confidence 44455555555554432 578889999999987 7899999999999987531 2345678998865
Q ss_pred cccHHHHHHHHHHHHHc
Q 020091 245 PLSHRQARKWMKRAADC 261 (331)
Q Consensus 245 ~~~~~~A~~~~~~a~~~ 261 (331)
.+++++|..+|+++...
T Consensus 199 ~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 199 RGDYEAALAIYDTHIAP 215 (355)
T ss_pred CCCHHHHHHHHHHHhcc
Confidence 44999999999998654
No 87
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.90 E-value=4.7e-07 Score=86.95 Aligned_cols=66 Identities=17% Similarity=0.151 Sum_probs=58.5
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 020091 97 PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (331)
Q Consensus 97 ~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (331)
+..|+.+.|.|+.-|.. .++.+.|.++.+++++.+ ++.++..|+.++...+++.+|+..-..+++-
T Consensus 474 d~~dp~~if~lalq~A~----~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 474 DPTDPLVIFYLALQYAE----QRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred CCCCchHHHHHHHHHHH----HHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 34588999999999988 899999999999999872 8999999999999999999999888887754
No 88
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.88 E-value=1.1e-06 Score=80.68 Aligned_cols=148 Identities=20% Similarity=0.104 Sum_probs=129.0
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccC
Q 020091 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPAN 175 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 175 (331)
.+-..++|..+..++. .++++.|...+...+.. +++..+-..+.++...++..+|++.+++++.+.|
T Consensus 303 ~~~~aa~YG~A~~~~~----~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P------- 371 (484)
T COG4783 303 RGGLAAQYGRALQTYL----AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDP------- 371 (484)
T ss_pred ccchHHHHHHHHHHHH----hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-------
Confidence 3678899999999999 89999999999987654 6899999999999999999999999999999877
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHH
Q 020091 176 AEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARK 253 (331)
Q Consensus 176 ~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~ 253 (331)
+.+....++|.+|.. .+++.+|+..+++.... .++..|..|+..|..
T Consensus 372 --------------~~~~l~~~~a~all~----~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~------------- 420 (484)
T COG4783 372 --------------NSPLLQLNLAQALLK----GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE------------- 420 (484)
T ss_pred --------------CccHHHHHHHHHHHh----cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH-------------
Confidence 468888999999998 57888999999999765 789999999999964
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 254 WMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 254 ~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
..+...+....+..|+..|++++|+.++.+|-+.
T Consensus 421 ------~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 421 ------LGNRAEALLARAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred ------hCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 2234677778888899999999999999999875
No 89
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.88 E-value=9.2e-07 Score=83.63 Aligned_cols=250 Identities=17% Similarity=0.043 Sum_probs=141.6
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLM 146 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~ 146 (331)
++..+.+....|+..+|..+....++..+. +-+.++.--.+-+. ...++.|..+|.+|-.. |....++.-+.+
T Consensus 587 wlM~ake~w~agdv~~ar~il~~af~~~pn--seeiwlaavKle~e----n~e~eraR~llakar~~sgTeRv~mKs~~~ 660 (913)
T KOG0495|consen 587 WLMYAKEKWKAGDVPAARVILDQAFEANPN--SEEIWLAAVKLEFE----NDELERARDLLAKARSISGTERVWMKSANL 660 (913)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHhCCC--cHHHHHHHHHHhhc----cccHHHHHHHHHHHhccCCcchhhHHHhHH
Confidence 344555555667777777666666666543 23333222223322 56677777777776543 456666666666
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHH
Q 020091 147 YWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQ 213 (331)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~ 213 (331)
.+..++.++|+.+++.++...+... ..++.+.|...|....+. +...-+..|+.+=+. .++..
T Consensus 661 er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk----~~~~~ 736 (913)
T KOG0495|consen 661 ERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK----DGQLV 736 (913)
T ss_pred HHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH----hcchh
Confidence 6666777777777777776655554 444555555555554442 344444444444433 33455
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHH--------------------------------c
Q 020091 214 EAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD--------------------------------C 261 (331)
Q Consensus 214 ~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~--------------------------------~ 261 (331)
+|...+.++.-.+...+.++|..+-..-. ..+.++|.....+|++ .
T Consensus 737 rAR~ildrarlkNPk~~~lwle~Ir~ElR--~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce 814 (913)
T KOG0495|consen 737 RARSILDRARLKNPKNALLWLESIRMELR--AGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE 814 (913)
T ss_pred hHHHHHHHHHhcCCCcchhHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhcc
Confidence 55555555544333333333322221100 1133444433333332 2
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCCC
Q 020091 262 GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 331 (331)
Q Consensus 262 ~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~--~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~~ 331 (331)
+++.....+|..++.+..+++|..||.+|+..++ .++..++ .-..+..|..++-++++.+.-.-.|.|
T Consensus 815 ~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~f--ykfel~hG~eed~kev~~~c~~~EP~h 884 (913)
T KOG0495|consen 815 HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWF--YKFELRHGTEEDQKEVLKKCETAEPTH 884 (913)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHH--HHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence 4556677899999999999999999999998754 3444333 333445566667777888877777766
No 90
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.87 E-value=4.8e-07 Score=76.83 Aligned_cols=158 Identities=17% Similarity=0.073 Sum_probs=132.9
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccC
Q 020091 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPAN 175 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 175 (331)
.++..+ +.+...+.. .++-+.+..+..+++... +......+|..+...|++.+|+..+++++...+
T Consensus 64 p~d~~i-~~~a~a~~~----~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p------- 131 (257)
T COG5010 64 PEDLSI-AKLATALYL----RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP------- 131 (257)
T ss_pred cchHHH-HHHHHHHHh----cccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-------
Confidence 346666 777777766 678888888888876654 555666699999999999999999999999877
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHH
Q 020091 176 AEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARK 253 (331)
Q Consensus 176 ~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~ 253 (331)
.+.+++.-+|.+|.+ .++++.|..-|.+|++. +++....|||.+|.- ..|++.|..
T Consensus 132 --------------~d~~~~~~lgaaldq----~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L----~gd~~~A~~ 189 (257)
T COG5010 132 --------------TDWEAWNLLGAALDQ----LGRFDEARRAYRQALELAPNEPSIANNLGMSLLL----RGDLEDAET 189 (257)
T ss_pred --------------CChhhhhHHHHHHHH----ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH----cCCHHHHHH
Confidence 489999999999998 88999999999999875 789999999999964 559999999
Q ss_pred HHHHHHHcC--CHHHHHHHHHHHhccCCHHHHHHHHHH
Q 020091 254 WMKRAADCG--HGKAQLEHGLGLFTEGEMMKAVVYLEL 289 (331)
Q Consensus 254 ~~~~a~~~~--~~~a~~~Lg~~~~~~~~~~~A~~~~~~ 289 (331)
++..+...+ +.....+|+.+...+|++++|...-.+
T Consensus 190 lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 190 LLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 999998774 567778999999999999999876544
No 91
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.86 E-value=4.3e-07 Score=90.84 Aligned_cols=214 Identities=11% Similarity=-0.024 Sum_probs=152.9
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccC
Q 020091 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPAN 175 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 175 (331)
..+..++..|..+|.. .+++++|++..+.+.+. +...+++.+|.++.+.++++++.-. .++..-+ ...+
T Consensus 28 p~n~~a~~~Li~~~~~----~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~---~~~~ 98 (906)
T PRK14720 28 LSKFKELDDLIDAYKS----ENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFS---QNLK 98 (906)
T ss_pred cchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcc---cccc
Confidence 3578899999999988 79999999999988876 4888999999999999998888777 5554433 3445
Q ss_pred HHHHHHHH-HHHHHC-CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHH
Q 020091 176 AEEAVKLL-YQASIA-GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQA 251 (331)
Q Consensus 176 ~~~A~~~~-~~a~~~-~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A 251 (331)
. .++.++ ....+. ++..|++.||.||.. .++.++|...|+++++. .++.+++++|+.|.. . |.++|
T Consensus 99 ~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk----~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae----~-dL~KA 168 (906)
T PRK14720 99 W-AIVEHICDKILLYGENKLALRTLAEAYAK----LNENKKLKGVWERLVKADRDNPEIVKKLATSYEE----E-DKEKA 168 (906)
T ss_pred h-hHHHHHHHHHHhhhhhhHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----h-hHHHH
Confidence 5 455554 444454 456799999999987 78999999999999876 689999999999976 4 99999
Q ss_pred HHHHHHHHHc-----CCHHHH-HHHHHHHhccCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhh-hchhcHHHHHHHHHh
Q 020091 252 RKWMKRAADC-----GHGKAQ-LEHGLGLFTEGEMMKAVVYLELATRA-GETAADHVKNVILQQ-LSATSRDRAMLVVDS 323 (331)
Q Consensus 252 ~~~~~~a~~~-----~~~~a~-~~Lg~~~~~~~~~~~A~~~~~~A~~~-~~~~a~~~l~~~~~~-l~~~~~~~a~~~~~~ 323 (331)
..++.+|+.. .+.... ++...|.+...+++.-....++.... +.......+-.++.. ....+.+++..+++.
T Consensus 169 ~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~ 248 (906)
T PRK14720 169 ITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKK 248 (906)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 9999999875 111111 23344444445555555555555443 333333333333333 334456788888888
Q ss_pred hhcCCCC
Q 020091 324 WRAMPSL 330 (331)
Q Consensus 324 ~~~~~~~ 330 (331)
++++.|.
T Consensus 249 iL~~~~~ 255 (906)
T PRK14720 249 ILEHDNK 255 (906)
T ss_pred HHhcCCc
Confidence 8877664
No 92
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.85 E-value=9.7e-08 Score=93.68 Aligned_cols=126 Identities=12% Similarity=0.020 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHhc-----CCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC-
Q 020091 191 HVRAQYQLALCLHR-----GRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG- 262 (331)
Q Consensus 191 ~~~a~~~lg~~y~~-----G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~- 262 (331)
++..++|||.-|.. |.+ ..+...|+.++++++.. ++..-+..||.+ .|.| ++.-|..+|.++....
T Consensus 774 ~~~~WyNLGinylr~f~~l~et-~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl--sg~g---nva~aQHCfIks~~sep 847 (1238)
T KOG1127|consen 774 HMYPWYNLGINYLRYFLLLGET-MKDACTAIRCCKKAVSLCANNEGLWNALGVL--SGIG---NVACAQHCFIKSRFSEP 847 (1238)
T ss_pred ccchHHHHhHHHHHHHHHcCCc-chhHHHHHHHHHHHHHHhhccHHHHHHHHHh--hccc---hhhhhhhhhhhhhhccc
Confidence 34456666655543 221 23334666777766543 555556666666 3333 6666666666665442
Q ss_pred -CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHH
Q 020091 263 -HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVD 322 (331)
Q Consensus 263 -~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~ 322 (331)
....+.|+|.++.+..|++.|-..+.++...++.+..-+++..+....-+++-+...++.
T Consensus 848 ~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfa 908 (1238)
T KOG1127|consen 848 TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFA 908 (1238)
T ss_pred cchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345566777777777777777777777777777666666666666666665555554444
No 93
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=7.9e-07 Score=79.92 Aligned_cols=173 Identities=16% Similarity=0.101 Sum_probs=142.9
Q ss_pred CCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHH
Q 020091 118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLY 184 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~ 184 (331)
.++++.|..+-+++++.+ +..++..-|.++...++.++|+-.|+.|..+.|..- ..+.+.+|...-.
T Consensus 313 ~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An 392 (564)
T KOG1174|consen 313 EKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALAN 392 (564)
T ss_pred hhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 588899999999999875 889999999999999999999999999988865433 5677777777777
Q ss_pred HHHHC--CCHHHHHHHH-HHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHH
Q 020091 185 QASIA--GHVRAQYQLA-LCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAA 259 (331)
Q Consensus 185 ~a~~~--~~~~a~~~lg-~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~ 259 (331)
.+.+. .++.+..-+| .++... +.--++|..++.+++.. ++..|-..++.+... ++.+..++..+++..
T Consensus 393 ~~~~~~~~sA~~LtL~g~~V~~~d---p~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~----Eg~~~D~i~LLe~~L 465 (564)
T KOG1174|consen 393 WTIRLFQNSARSLTLFGTLVLFPD---PRMREKAKKFAEKSLKINPIYTPAVNLIAELCQV----EGPTKDIIKLLEKHL 465 (564)
T ss_pred HHHHHhhcchhhhhhhcceeeccC---chhHHHHHHHHHhhhccCCccHHHHHHHHHHHHh----hCccchHHHHHHHHH
Confidence 77664 6778888887 444431 55578999999999865 889999999998854 558899999999997
Q ss_pred Hc-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHH
Q 020091 260 DC-GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA 297 (331)
Q Consensus 260 ~~-~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~ 297 (331)
.. .+..-+..||.++.....+++|+.+|..|+..++.+
T Consensus 466 ~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 466 IIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred hhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 65 667778899999999999999999999999987643
No 94
>PLN03077 Protein ECB2; Provisional
Probab=98.84 E-value=1.8e-06 Score=88.76 Aligned_cols=145 Identities=10% Similarity=-0.069 Sum_probs=78.6
Q ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCccccHHH
Q 020091 174 ANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG---YVRAMYNTSLCYSFGEGLPLSHRQ 250 (331)
Q Consensus 174 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~---~~~a~~~lg~~y~~g~g~~~~~~~ 250 (331)
++.++|...|... ..+..++..|...|.. .++.++|++.|++..+.| +...+..+-..+.+ .++.++
T Consensus 538 G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~----~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~----~g~v~e 607 (857)
T PLN03077 538 GRMNYAWNQFNSH--EKDVVSWNILLTGYVA----HGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR----SGMVTQ 607 (857)
T ss_pred CCHHHHHHHHHhc--CCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhh----cChHHH
Confidence 3444444444443 3344555555555544 566777777777766654 22233333333322 236777
Q ss_pred HHHHHHHHHH-cC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhc
Q 020091 251 ARKWMKRAAD-CG---HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRA 326 (331)
Q Consensus 251 A~~~~~~a~~-~~---~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~ 326 (331)
|..+|....+ .| +...+..+...|...|++++|..++++.- . .+++..+-..+......++.+.+...++++.+
T Consensus 608 a~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~-~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~ 685 (857)
T PLN03077 608 GLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-I-TPDPAVWGALLNACRIHRHVELGELAAQHIFE 685 (857)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 7777777763 22 34456667777777788888877777642 1 11222222222233345555666666666666
Q ss_pred CCCC
Q 020091 327 MPSL 330 (331)
Q Consensus 327 ~~~~ 330 (331)
..|.
T Consensus 686 l~p~ 689 (857)
T PLN03077 686 LDPN 689 (857)
T ss_pred hCCC
Confidence 6654
No 95
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.83 E-value=1.1e-06 Score=86.46 Aligned_cols=94 Identities=16% Similarity=0.120 Sum_probs=77.4
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGL 145 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~ 145 (331)
.+..+...+...+|+++++.++..++..|+ |-.+++.||..+..- .++.++|.+.|..|++.. +.-|+-.|++
T Consensus 5 aLK~Ak~al~nk~YeealEqskkvLk~dpd--NYnA~vFLGvAl~sl---~q~le~A~ehYv~AaKldpdnlLAWkGL~n 79 (1238)
T KOG1127|consen 5 ALKSAKDALRNKEYEEALEQSKKVLKEDPD--NYNAQVFLGVALWSL---GQDLEKAAEHYVLAAKLDPDNLLAWKGLGN 79 (1238)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhcCCC--cchhhhHHHHHHHhc---cCCHHHHHHHHHHHHhcChhhhHHHHHHHH
Confidence 355666778889999999999999998776 566788899999872 556999999999999985 8889999999
Q ss_pred HHhcC---CCHHHHHHHHHHHHHc
Q 020091 146 MYWEM---DKKEAAISLYRQAAVL 166 (331)
Q Consensus 146 ~~~~~---~~~~~A~~~~~~a~~~ 166 (331)
+|.+- -+++++...|++++..
T Consensus 80 Lye~~~dIl~ld~~~~~yq~~~l~ 103 (1238)
T KOG1127|consen 80 LYERYNDILDLDRAAKCYQRAVLI 103 (1238)
T ss_pred HHHccchhhhhhHhHHHHHHHHHh
Confidence 99884 5678888888888654
No 96
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.2e-06 Score=81.18 Aligned_cols=212 Identities=18% Similarity=0.144 Sum_probs=155.1
Q ss_pred hccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-CH--------HHHHHHH
Q 020091 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-ST--------LAMVDAG 144 (331)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~--------~a~~~lg 144 (331)
..+...++..+++-+...+... .+..-+.+.+-.|+. .+.+.+.+..-..|++.| .. .+...+|
T Consensus 233 aaykkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e----~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 233 AAYKKKDFETAIQHYAKALELA---TDITYLNNIAAVYLE----RGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHh----ccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 4556677777776666666654 355666777777777 777777777777777665 22 2334567
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCC---CCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 020091 145 LMYWEMDKKEAAISLYRQAAVLGDPA---AQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWY 219 (331)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~ 219 (331)
..|...++++.|+.+|.+++.---.. ...+..++++......+- +.-+.....-|+.+.. .+||.+|+..|
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk----~gdy~~Av~~Y 381 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFK----KGDYPEAVKHY 381 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHh----ccCHHHHHHHH
Confidence 77777889999999999987542211 134445555555444322 2224444566887776 89999999999
Q ss_pred HHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 020091 220 LRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE 295 (331)
Q Consensus 220 ~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~ 295 (331)
.+|+.. .++..+.|.+.||.. ..++..|+.-.+.+++.+ ...+++.=|.+++.++++++|+..|+.+.+.++
T Consensus 382 teAIkr~P~Da~lYsNRAac~~k----L~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 382 TEAIKRDPEDARLYSNRAACYLK----LGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred HHHHhcCCchhHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 999986 678889999999976 459999999999999884 467889999999999999999999999999987
Q ss_pred HHHHH
Q 020091 296 TAADH 300 (331)
Q Consensus 296 ~~a~~ 300 (331)
.....
T Consensus 458 ~~~e~ 462 (539)
T KOG0548|consen 458 SNAEA 462 (539)
T ss_pred hhHHH
Confidence 65544
No 97
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.77 E-value=2e-07 Score=85.79 Aligned_cols=95 Identities=14% Similarity=0.056 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHH
Q 020091 118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQ 195 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~ 195 (331)
.+++++|+.+|++|+..+ ++.+++++|.+|...|++++|+..+++++.+++ +++.++
T Consensus 15 ~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P---------------------~~~~a~ 73 (356)
T PLN03088 15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP---------------------SLAKAY 73 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---------------------CCHHHH
Confidence 455555555555555443 455555555555555555555555555555543 345555
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH
Q 020091 196 YQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLC 237 (331)
Q Consensus 196 ~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~ 237 (331)
+++|.+|.. .+++++|+.+|++++.. ++..+...++.|
T Consensus 74 ~~lg~~~~~----lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 74 LRKGTACMK----LEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 555555544 45555555555555443 344444444444
No 98
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.76 E-value=3.8e-06 Score=79.45 Aligned_cols=256 Identities=12% Similarity=-0.015 Sum_probs=170.1
Q ss_pred HHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 020091 66 FDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDA 143 (331)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~l 143 (331)
...+.++...++.+++...+..+..++++.++. ++++...|..... .|+.++|..+-+.++.. ++..+|.-+
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eH--geslAmkGL~L~~----lg~~~ea~~~vr~glr~d~~S~vCwHv~ 81 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEH--GESLAMKGLTLNC----LGKKEEAYELVRLGLRNDLKSHVCWHVL 81 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCcc--chhHHhccchhhc----ccchHHHHHHHHHHhccCcccchhHHHH
Confidence 345677778899999999999999999987764 5555557877766 89999999999999875 478889999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCC
Q 020091 144 GLMYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDF 210 (331)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~ 210 (331)
|.++...+++++|+++|+.|+..++++- ..++++-....-.+..+ ++.-..+..++..+.- .+
T Consensus 82 gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L----~g 157 (700)
T KOG1156|consen 82 GLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHL----LG 157 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH----HH
Confidence 9999999999999999999999987765 45555555444444433 3455555556665543 56
Q ss_pred CHHHHHHHHHHHHHCC-----CHHHHHHHHHHHhcCCCc-cccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHH
Q 020091 211 NLQEAARWYLRAAEGG-----YVRAMYNTSLCYSFGEGL-PLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMK 282 (331)
Q Consensus 211 d~~~A~~~~~~A~~~~-----~~~a~~~lg~~y~~g~g~-~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~ 282 (331)
++..|........... ...--.....+|....-. ....++|.+.+..--.. +.......-|.+++..++.++
T Consensus 158 ~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEe 237 (700)
T KOG1156|consen 158 EYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEE 237 (700)
T ss_pred HHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHh
Confidence 7887776655543321 111222333333221000 11355666555543222 222233456888999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhh-chhcHHHHHHHHHhhhcCCCCC
Q 020091 283 AVVYLELATRAGETAADHVKNVILQQL-SATSRDRAMLVVDSWRAMPSLH 331 (331)
Q Consensus 283 A~~~~~~A~~~~~~~a~~~l~~~~~~l-~~~~~~~a~~~~~~~~~~~~~~ 331 (331)
|...|...+..++.+-.+......... -....+....++..+-+.+|.|
T Consensus 238 A~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 238 AVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH 287 (700)
T ss_pred HHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence 999999999988776666554444432 3344444446677766666654
No 99
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.76 E-value=8.8e-06 Score=77.20 Aligned_cols=243 Identities=16% Similarity=0.030 Sum_probs=194.7
Q ss_pred hccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCC
Q 020091 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMD 151 (331)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~ 151 (331)
..-..+.++-+..+|...++-.+. .-..+.....+-.. -|..+.-..+|++|+..- ...-+.+.+.-++..|
T Consensus 525 ~~~k~~~~~carAVya~alqvfp~--k~slWlra~~~ek~----hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ag 598 (913)
T KOG0495|consen 525 SCEKRPAIECARAVYAHALQVFPC--KKSLWLRAAMFEKS----HGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAG 598 (913)
T ss_pred HHHhcchHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHh----cCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcC
Confidence 334456667777777777776554 23334444444434 577788888899998763 5556677778888889
Q ss_pred CHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHH-CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 020091 152 KKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASI-AGHVRAQYQLALCLHRGRGVDFNLQEAARWY 219 (331)
Q Consensus 152 ~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~ 219 (331)
|...|...+.+|.+..+..- ....++.|..++.+|-. .|-...++.-+.+-.. ..+.++|++++
T Consensus 599 dv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~----ld~~eeA~rll 674 (913)
T KOG0495|consen 599 DVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERY----LDNVEEALRLL 674 (913)
T ss_pred CcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHH----hhhHHHHHHHH
Confidence 99999999999998766533 67789999999999855 4677777777766654 67899999999
Q ss_pred HHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 020091 220 LRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE 295 (331)
Q Consensus 220 ~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~ 295 (331)
+.+++. ....-+..+|.++.+ .++.+.|...|...... +...-+..|+.+-...|...+|...++++--.++
T Consensus 675 Ee~lk~fp~f~Kl~lmlGQi~e~----~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP 750 (913)
T KOG0495|consen 675 EEALKSFPDFHKLWLMLGQIEEQ----MENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP 750 (913)
T ss_pred HHHHHhCCchHHHHHHHhHHHHH----HHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC
Confidence 999986 678889999999977 56999999999988776 5677888999988889999999999999999999
Q ss_pred HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 296 TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 296 ~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
.++..++..+-..+..+..++|...+.+.++-+|+
T Consensus 751 k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~ 785 (913)
T KOG0495|consen 751 KNALLWLESIRMELRAGNKEQAELLMAKALQECPS 785 (913)
T ss_pred CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999888875
No 100
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.76 E-value=2.8e-08 Score=68.51 Aligned_cols=65 Identities=22% Similarity=0.323 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCC
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMD-KKEAAISLYRQAAVLGD 168 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~-~~~~A~~~~~~a~~~~~ 168 (331)
++..++.+|.++.. .+++++|+.+|.++++.+ ++.+++++|.+|...+ ++++|+..|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~----~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQ----QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHH----TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 58899999999999 999999999999999875 8899999999999999 79999999999998764
No 101
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.76 E-value=1.5e-05 Score=70.26 Aligned_cols=249 Identities=11% Similarity=0.014 Sum_probs=179.9
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHH
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLM 146 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~ 146 (331)
+......+-.|++..|+.-|....+..| .+-.++|.-|..|.. -|+..-|+.-+.+.+++. ...|...-|.+
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp--~~Y~aifrRaT~yLA----mGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDP--NNYQAIFRRATVYLA----MGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCc--hhHHHHHHHHHHHhh----hcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 4455566777888888766655544433 356788888888887 778888888888888764 66778889999
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCC--------------------------CccCHHHHHHHHHHHHHCC--CHHHHHHH
Q 020091 147 YWEMDKKEAAISLYRQAAVLGDPAA--------------------------QPANAEEAVKLLYQASIAG--HVRAQYQL 198 (331)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~~~~~~--------------------------~~~~~~~A~~~~~~a~~~~--~~~a~~~l 198 (331)
+.+.|.+++|+.=|.+.+...+... ..+|...|+.+..+.++-. ++.-+-.-
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~R 195 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQAR 195 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHH
Confidence 9999999999999999998877655 5667777777777776653 44445556
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHH----------------
Q 020091 199 ALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD---------------- 260 (331)
Q Consensus 199 g~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~---------------- 260 (331)
+.||.. .++..+|+.-++.+... ++..++|.+..+++. .| +.+.++.-.+.++.
T Consensus 196 akc~i~----~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~-vg---d~~~sL~~iRECLKldpdHK~Cf~~YKklk 267 (504)
T KOG0624|consen 196 AKCYIA----EGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT-VG---DAENSLKEIRECLKLDPDHKLCFPFYKKLK 267 (504)
T ss_pred HHHHHh----cCcHHHHHHHHHHHHhccccchHHHHHHHHHHHh-hh---hHHHHHHHHHHHHccCcchhhHHHHHHHHH
Confidence 677765 67788888888888654 777888877777743 22 33333333333322
Q ss_pred --------------cCCHHHHH----------------------HHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 020091 261 --------------CGHGKAQL----------------------EHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNV 304 (331)
Q Consensus 261 --------------~~~~~a~~----------------------~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~ 304 (331)
.++...+. .+-.|+...+++-+|+..-.++++..+.++..+-..
T Consensus 268 Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dR 347 (504)
T KOG0624|consen 268 KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDR 347 (504)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 22222221 233445557789999999999999999888888888
Q ss_pred HHhhhchhcHHHHHHHHHhhhcCCCCC
Q 020091 305 ILQQLSATSRDRAMLVVDSWRAMPSLH 331 (331)
Q Consensus 305 ~~~~l~~~~~~~a~~~~~~~~~~~~~~ 331 (331)
....+...+.+.|++-+++..+.+++|
T Consensus 348 AeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 348 AEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 888899999999999999988888765
No 102
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.75 E-value=4.1e-07 Score=74.84 Aligned_cols=82 Identities=21% Similarity=0.325 Sum_probs=71.6
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCC
Q 020091 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQ 172 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 172 (331)
...+.+++.+|.+|.. .+++++|+.+|++++... .+.+++++|.++...|++++|+.+|++++...+
T Consensus 32 ~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---- 103 (172)
T PRK02603 32 AKEAFVYYRDGMSAQA----DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP---- 103 (172)
T ss_pred hhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----
Confidence 3577889999999999 899999999999999753 246899999999999999999999999998765
Q ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Q 020091 173 PANAEEAVKLLYQASIAGHVRAQYQLALCLHR 204 (331)
Q Consensus 173 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~ 204 (331)
.++.++..+|.+|..
T Consensus 104 -----------------~~~~~~~~lg~~~~~ 118 (172)
T PRK02603 104 -----------------KQPSALNNIAVIYHK 118 (172)
T ss_pred -----------------ccHHHHHHHHHHHHH
Confidence 478888899998865
No 103
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.75 E-value=3e-07 Score=75.34 Aligned_cols=100 Identities=19% Similarity=0.203 Sum_probs=77.0
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCC
Q 020091 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQ 172 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 172 (331)
...+.+++.+|.++.. .+++++|+.+|++++... .+.+++++|.++...|++++|+.+|++++...+
T Consensus 32 ~~~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~---- 103 (168)
T CHL00033 32 EKEAFTYYRDGMSAQS----EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP---- 103 (168)
T ss_pred hHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----
Confidence 3457788999999998 899999999999998763 345899999999999999999999999998755
Q ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-CC--CCCCCHHHHHHHHHHH
Q 020091 173 PANAEEAVKLLYQASIAGHVRAQYQLALCLHR-GR--GVDFNLQEAARWYLRA 222 (331)
Q Consensus 173 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~-G~--g~~~d~~~A~~~~~~A 222 (331)
.+..++.++|.+|.. |. ...+++.+|+.+|.++
T Consensus 104 -----------------~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 104 -----------------FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred -----------------CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 466777888887763 11 0145555555444444
No 104
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.73 E-value=3.8e-07 Score=87.08 Aligned_cols=198 Identities=15% Similarity=-0.009 Sum_probs=132.0
Q ss_pred hccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHhcCCC
Q 020091 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA-RGSTLAMVDAGLMYWEMDK 152 (331)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~-~~~~~a~~~lg~~~~~~~~ 152 (331)
..+..|-..+|..+|.+. ..+-..-.||.. .|+..+|....++-++ ..++..+..||.+....-=
T Consensus 407 ll~slGitksAl~I~Erl----------emw~~vi~CY~~----lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 407 LLLSLGITKSALVIFERL----------EMWDPVILCYLL----LGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHcchHHHHHHHHHhH----------HHHHHHHHHHHH----hcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 345667777887666533 333445566666 6788888888888887 3477777888888776655
Q ss_pred HHHHHHHHHHHHHc-----CCCCCCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH-
Q 020091 153 KEAAISLYRQAAVL-----GDPAAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE- 224 (331)
Q Consensus 153 ~~~A~~~~~~a~~~-----~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~- 224 (331)
+++|.+++...-.. ++..-..++++++...++.+.+. .....+|.+|.+..+ ..+++.|..+|.+.+.
T Consensus 473 yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALq----lek~q~av~aF~rcvtL 548 (777)
T KOG1128|consen 473 YEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQ----LEKEQAAVKAFHRCVTL 548 (777)
T ss_pred HHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHH----HhhhHHHHHHHHHHhhc
Confidence 55565555433211 12111456777777777776543 567777777777765 6677777777777754
Q ss_pred -CCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 225 -GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 225 -~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
.++..+++||...|.. .++..+|...+++|... +++..+.|.-.+..+-|++++|+..|.+.++.
T Consensus 549 ~Pd~~eaWnNls~ayi~----~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 549 EPDNAEAWNNLSTAYIR----LKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred CCCchhhhhhhhHHHHH----HhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 3777777777777765 44777777777777655 55666666666667777777777777777654
No 105
>PLN03077 Protein ECB2; Provisional
Probab=98.70 E-value=3.8e-06 Score=86.40 Aligned_cols=110 Identities=11% Similarity=-0.021 Sum_probs=62.0
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccCCHHHHHH
Q 020091 209 DFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG---HGKAQLEHGLGLFTEGEMMKAVV 285 (331)
Q Consensus 209 ~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~~~~~~~~~~A~~ 285 (331)
.++.++|...|... ..+..++..+...|.. .++.++|+..|++..+.| +...+..+-..+...|+.++|..
T Consensus 537 ~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~----~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~ 610 (857)
T PLN03077 537 CGRMNYAWNQFNSH--EKDVVSWNILLTGYVA----HGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE 610 (857)
T ss_pred cCCHHHHHHHHHhc--CCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHH
Confidence 34556666666554 4455566666666543 336677777777766543 23344444455666777777777
Q ss_pred HHHHHH-HcC-CHHHHHHHHHHHhhhchhcHHHHHHHHHhh
Q 020091 286 YLELAT-RAG-ETAADHVKNVILQQLSATSRDRAMLVVDSW 324 (331)
Q Consensus 286 ~~~~A~-~~~-~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~ 324 (331)
+|+... +.| .++.......+......++.++|.+++++.
T Consensus 611 ~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 777776 333 222233333333444456677777777664
No 106
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.70 E-value=4.3e-07 Score=83.52 Aligned_cols=97 Identities=14% Similarity=0.072 Sum_probs=88.4
Q ss_pred HHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHH
Q 020091 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAG 144 (331)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg 144 (331)
+++..+...+..+++.+|+..+.+.++..++ ++.+++.+|.+|.. .+++++|+..+++|+... ++.+++++|
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~--~~~a~~~~a~~~~~----~g~~~eAl~~~~~Al~l~P~~~~a~~~lg 77 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPN--NAELYADRAQANIK----LGNFTEAVADANKAIELDPSLAKAYLRKG 77 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 4567778889999999999999999887664 79999999999999 899999999999999875 899999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 145 LMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
.+|...|++++|+.+|++++.+++.
T Consensus 78 ~~~~~lg~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 78 TACMKLEEYQTAKAALEKGASLAPG 102 (356)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999998774
No 107
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.69 E-value=1.7e-05 Score=71.22 Aligned_cols=237 Identities=13% Similarity=-0.041 Sum_probs=155.3
Q ss_pred HHHHhccCCchHHHhHHHHHHHHHHhCCC-CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-C--CHHHHHHHHH
Q 020091 70 NKIAASFTLPQLRAASLVCKSWNDALRPL-REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-G--STLAMVDAGL 145 (331)
Q Consensus 70 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-~--~~~a~~~lg~ 145 (331)
..+...+..|++.+|+....+ .++. ..+...+.+|--..++ .+|++.|-.|+.++++. | ........+.
T Consensus 89 ~egl~~l~eG~~~qAEkl~~r----nae~~e~p~l~~l~aA~AA~q---rgd~~~an~yL~eaae~~~~~~l~v~ltrar 161 (400)
T COG3071 89 NEGLLKLFEGDFQQAEKLLRR----NAEHGEQPVLAYLLAAEAAQQ---RGDEDRANRYLAEAAELAGDDTLAVELTRAR 161 (400)
T ss_pred HHHHHHHhcCcHHHHHHHHHH----hhhcCcchHHHHHHHHHHHHh---cccHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 344456778999999644443 3333 3566666666433333 79999999999999988 3 3345566777
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHH---------------------------------
Q 020091 146 MYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVK--------------------------------- 181 (331)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~--------------------------------- 181 (331)
++...+|+..|..-..++.++.+... ..+++.....
T Consensus 162 lll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~ 241 (400)
T COG3071 162 LLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARD 241 (400)
T ss_pred HHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhc
Confidence 88888888888888888888876655 1222222221
Q ss_pred ---------HHHHHH--HCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHhcCCCccccHH
Q 020091 182 ---------LLYQAS--IAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-YVRAMYNTSLCYSFGEGLPLSHR 249 (331)
Q Consensus 182 ---------~~~~a~--~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~-~~~a~~~lg~~y~~g~g~~~~~~ 249 (331)
|++.-- ...++.....++.-+.. .++.++|.++.+.+++.+ ++. +..+.-.. . +++..
T Consensus 242 ~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~----l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~l-~----~~d~~ 311 (400)
T COG3071 242 DNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIR----LGDHDEAQEIIEDALKRQWDPR-LCRLIPRL-R----PGDPE 311 (400)
T ss_pred cccchHHHHHHHhccHHhhcChhHHHHHHHHHHH----cCChHHHHHHHHHHHHhccChh-HHHHHhhc-C----CCCch
Confidence 222210 11345555555555554 789999999999999874 455 33332222 2 33555
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHhhhchhcHHHHHHHHHhhh
Q 020091 250 QARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE-TAADHVKNVILQQLSATSRDRAMLVVDSWR 325 (331)
Q Consensus 250 ~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~-~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~ 325 (331)
.=++..++.+.. .++.....||..++..+.+.+|..+|+.|+...+ ......++..+.++. +..+|.+..++.+
T Consensus 312 ~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g--~~~~A~~~r~e~L 388 (400)
T COG3071 312 PLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLG--EPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcC--ChHHHHHHHHHHH
Confidence 555555555544 5678889999999999999999999999998864 556667777777664 4456666666643
No 108
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.67 E-value=4.3e-05 Score=73.19 Aligned_cols=245 Identities=11% Similarity=-0.017 Sum_probs=177.1
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHH
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLM 146 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~ 146 (331)
+-++.-..+.|++++|+.......+...| ....+-..|.++.. .|++++|...|+..++.+ +..-+..|..+
T Consensus 8 LY~~~il~e~g~~~~AL~~L~~~~~~I~D--k~~~~E~rA~ll~k----Lg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 8 LYKNSILEEAGDYEEALEHLEKNEKQILD--KLAVLEKRAELLLK----LGRKEEAEKIYRELIDRNPDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhhhhCCC--HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 33444456789999998777666555554 45667778999998 899999999999999987 44444455544
Q ss_pred Hhc-----CCCHHHHHHHHHHHHHcCCCCC----------CccCHHH-HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCC
Q 020091 147 YWE-----MDKKEAAISLYRQAAVLGDPAA----------QPANAEE-AVKLLYQASIAGHVRAQYQLALCLHRGRGVDF 210 (331)
Q Consensus 147 ~~~-----~~~~~~A~~~~~~a~~~~~~~~----------~~~~~~~-A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~ 210 (331)
... ..+.+.-..+|.+.....+... ....+.. +..|....+..|.|....+|-.+|.. +.
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d----~~ 157 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKD----PE 157 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcC----hh
Confidence 411 2356777888887776654322 2234444 44556678889999999999998874 21
Q ss_pred CHHHHHHHHHHH---HHC------C------C----HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC--CHHHHHH
Q 020091 211 NLQEAARWYLRA---AEG------G------Y----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKAQLE 269 (331)
Q Consensus 211 d~~~A~~~~~~A---~~~------~------~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~ 269 (331)
...-....+..- ++. + . ..+++.|+..|.. .+++++|+++..+|++.. .++.++.
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~----~g~~~~Al~~Id~aI~htPt~~ely~~ 233 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY----LGDYEKALEYIDKAIEHTPTLVELYMT 233 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 111112222221 110 1 1 2356788888855 449999999999999984 4788889
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcC
Q 020091 270 HGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAM 327 (331)
Q Consensus 270 Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~ 327 (331)
-|.+|...|++++|..+++.|-..+..+=..|-.-+...+..+++++|...+..+.+.
T Consensus 234 KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 234 KARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 9999999999999999999999999888888888888889999999999998887654
No 109
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.67 E-value=1.2e-07 Score=84.53 Aligned_cols=196 Identities=13% Similarity=0.053 Sum_probs=129.3
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccC
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG----STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPAN 175 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 175 (331)
...+...++..+.. ..+.++++.-++..+... ++......|.++...|++++|+..+.+.
T Consensus 65 ~l~av~~la~y~~~----~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------------ 128 (290)
T PF04733_consen 65 ELQAVRLLAEYLSS----PSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------------ 128 (290)
T ss_dssp CCHHHHHHHHHHCT----STTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------------
T ss_pred hHHHHHHHHHHHhC----ccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------------
Confidence 44555566655544 455666666555443222 3445566667777777777776665432
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH--HHHHhcCCCccccHHHHHH
Q 020091 176 AEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNT--SLCYSFGEGLPLSHRQARK 253 (331)
Q Consensus 176 ~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~l--g~~y~~g~g~~~~~~~A~~ 253 (331)
++.+...-.-.+|.. .++++.|.+-++..-+.++-....+| +|+.....| ..+.+|..
T Consensus 129 --------------~~lE~~al~Vqi~L~----~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~--e~~~~A~y 188 (290)
T PF04733_consen 129 --------------GSLELLALAVQILLK----MNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGG--EKYQDAFY 188 (290)
T ss_dssp --------------TCHHHHHHHHHHHHH----TT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTT--TCCCHHHH
T ss_pred --------------CcccHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCc--hhHHHHHH
Confidence 356666666667765 67899999999998776554444444 444433121 48999999
Q ss_pred HHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcH-HHHHHHHHhhhcCCCC
Q 020091 254 WMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSR-DRAMLVVDSWRAMPSL 330 (331)
Q Consensus 254 ~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~-~~a~~~~~~~~~~~~~ 330 (331)
.|+...+. ..+...+.++.+++.+|++++|...++.|++.++.++..+.+.+......++- +.+.+.+.+++..+|.
T Consensus 189 ~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 189 IFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 99998776 34667788999999999999999999999887665555555555543433433 5677888889988988
Q ss_pred C
Q 020091 331 H 331 (331)
Q Consensus 331 ~ 331 (331)
|
T Consensus 269 h 269 (290)
T PF04733_consen 269 H 269 (290)
T ss_dssp S
T ss_pred C
Confidence 7
No 110
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.66 E-value=1.9e-06 Score=73.28 Aligned_cols=158 Identities=11% Similarity=0.015 Sum_probs=123.4
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHH
Q 020091 135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQE 214 (331)
Q Consensus 135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~ 214 (331)
++... .+++..+...|+-+.+..+..+++...+ .+......+|..... .+|+.+
T Consensus 65 ~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~---------------------~d~~ll~~~gk~~~~----~g~~~~ 118 (257)
T COG5010 65 EDLSI-AKLATALYLRGDADSSLAVLQKSAIAYP---------------------KDRELLAAQGKNQIR----NGNFGE 118 (257)
T ss_pred chHHH-HHHHHHHHhcccccchHHHHhhhhccCc---------------------ccHHHHHHHHHHHHH----hcchHH
Confidence 35555 6777777777777777666666554433 255566667877765 789999
Q ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 020091 215 AARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELA 290 (331)
Q Consensus 215 A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A 290 (331)
|+..+++|+.. .+..++..+|.+|.+ ..+++.|..-|.++.+. +.+....|||..|+-.||++.|..++..+
T Consensus 119 A~~~~rkA~~l~p~d~~~~~~lgaaldq----~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a 194 (257)
T COG5010 119 AVSVLRKAARLAPTDWEAWNLLGAALDQ----LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPA 194 (257)
T ss_pred HHHHHHHHhccCCCChhhhhHHHHHHHH----ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999876 789999999999966 44999999999999887 67899999999999999999999999999
Q ss_pred HHcC--CHHHHHHHHHHHhhhchhcHHHHHHHHHhh
Q 020091 291 TRAG--ETAADHVKNVILQQLSATSRDRAMLVVDSW 324 (331)
Q Consensus 291 ~~~~--~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~ 324 (331)
...+ +.....|+..+.. ..+++.+|+.+..+-
T Consensus 195 ~l~~~ad~~v~~NLAl~~~--~~g~~~~A~~i~~~e 228 (257)
T COG5010 195 YLSPAADSRVRQNLALVVG--LQGDFREAEDIAVQE 228 (257)
T ss_pred HhCCCCchHHHHHHHHHHh--hcCChHHHHhhcccc
Confidence 8765 5666667666664 456667777666553
No 111
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.66 E-value=3.2e-05 Score=68.31 Aligned_cols=223 Identities=15% Similarity=0.086 Sum_probs=175.2
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC------
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA------ 171 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~------ 171 (331)
++.-.+.||.-++. .+.+..|+..|..|++.+ +-.+.+.-|..|...|+-.-|+.=+.+++++.++..
T Consensus 37 dvekhlElGk~lla----~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 37 DVEKHLELGKELLA----RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHH----hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 45667888988887 899999999999999875 778999999999999999999999999999987765
Q ss_pred -----CccCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHhc--------CCCCCCCHHHHHHHHHHHHHCCCH--HHH
Q 020091 172 -----QPANAEEAVKLLYQASIAG-----HVRAQYQLALCLHR--------GRGVDFNLQEAARWYLRAAEGGYV--RAM 231 (331)
Q Consensus 172 -----~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~y~~--------G~g~~~d~~~A~~~~~~A~~~~~~--~a~ 231 (331)
..+.+++|..-|.+.++.+ .-+++-.|+.+-.. .....+|+..|+++....++.... .-.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~ 192 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLR 192 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHH
Confidence 7899999999999998753 23444444433211 011267999999999999987544 445
Q ss_pred HHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHH------------
Q 020091 232 YNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA------------ 297 (331)
Q Consensus 232 ~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~------------ 297 (331)
..-+.||.. .....+|+.-++.+... ++.+++|.++.+++..|+.+.++.-.+.-+..++..
T Consensus 193 ~~Rakc~i~----~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 193 QARAKCYIA----EGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHHHHh----cCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHH
Confidence 567888865 45899999999999876 778999999999999999999999999988876522
Q ss_pred HHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 298 ADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 298 a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
....+..+...+...+.-++.+..+++++..|+
T Consensus 269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~ 301 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPE 301 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCc
Confidence 233444555566677777788888888877775
No 112
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.60 E-value=1.4e-06 Score=66.49 Aligned_cols=99 Identities=12% Similarity=0.002 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--C---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccC
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S---TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPAN 175 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 175 (331)
+..++.+|..+.. .+++++|+..|.+++... + +.+++.+|.++...+++++|+.+|++++...+...
T Consensus 2 ~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---- 73 (119)
T TIGR02795 2 EEAYYDAALLVLK----AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP---- 73 (119)
T ss_pred cHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC----
Confidence 4678888988888 899999999999988753 2 56888999999999999999999988887654210
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 176 AEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 176 ~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
..+.+++.+|.++.. .+++++|+.+|.++++.
T Consensus 74 --------------~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 74 --------------KAPDALLKLGMSLQE----LGDKEKAKATLQQVIKR 105 (119)
T ss_pred --------------cccHHHHHHHHHHHH----hCChHHHHHHHHHHHHH
Confidence 136788899998886 78899999999988775
No 113
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.60 E-value=1.9e-07 Score=64.30 Aligned_cols=65 Identities=23% Similarity=0.300 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCC-CHHH
Q 020091 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDF-NLQE 214 (331)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~-d~~~ 214 (331)
++..++.+|.++...+++++|+.+|.++++.++ +++.+++++|.+|.. .+ ++.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p---------------------~~~~~~~~~g~~~~~----~~~~~~~ 56 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP---------------------NNAEAYYNLGLAYMK----LGKDYEE 56 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST---------------------THHHHHHHHHHHHHH----TTTHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------------------CCHHHHHHHHHHHHH----hCccHHH
Confidence 567888999999999999999999999998876 588899999999986 66 6899
Q ss_pred HHHHHHHHHHC
Q 020091 215 AARWYLRAAEG 225 (331)
Q Consensus 215 A~~~~~~A~~~ 225 (331)
|+++|+++++.
T Consensus 57 A~~~~~~al~l 67 (69)
T PF13414_consen 57 AIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999998764
No 114
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=2.4e-06 Score=76.87 Aligned_cols=238 Identities=13% Similarity=-0.003 Sum_probs=128.3
Q ss_pred hccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCC
Q 020091 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMD 151 (331)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~ 151 (331)
..+...+|..|+..+...++.-++ ++..+.+-+..+.. -++++.|.-..++.++. |.+.++...+.|+...+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd--~a~yy~nRAa~~m~----~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD--NASYYSNRAATLMM----LGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALS 131 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc--chhhhchhHHHHHH----HHhHhhcccchhhheecCCCccccccchhhhhhhhH
Confidence 355667788888888777777766 46666666666666 67888888888877765 56777788888887777
Q ss_pred CHHHHHHHHHHHH---------------HcCC--CCC------------CccCHHHHHHHHHHHHHC--CCHHHHHHHHH
Q 020091 152 KKEAAISLYRQAA---------------VLGD--PAA------------QPANAEEAVKLLYQASIA--GHVRAQYQLAL 200 (331)
Q Consensus 152 ~~~~A~~~~~~a~---------------~~~~--~~~------------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~ 200 (331)
+..+|.+.|+... .... |.. ..+++.+|...--...++ .+.++.+--|.
T Consensus 132 ~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~ 211 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGL 211 (486)
T ss_pred HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccc
Confidence 7777776665221 0000 000 233333333332222222 34455555555
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHCCCHH--------------HHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC---
Q 020091 201 CLHRGRGVDFNLQEAARWYLRAAEGGYVR--------------AMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--- 263 (331)
Q Consensus 201 ~y~~G~g~~~d~~~A~~~~~~A~~~~~~~--------------a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--- 263 (331)
++.. ..+.++|+..|++++..+... .+-.-|...+. ..++.+|.+.|..|+..+.
T Consensus 212 ~~yy----~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk----~G~y~~A~E~Yteal~idP~n~ 283 (486)
T KOG0550|consen 212 CLYY----NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFK----NGNYRKAYECYTEALNIDPSNK 283 (486)
T ss_pred cccc----ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhh----ccchhHHHHHHHHhhcCCcccc
Confidence 4443 445566666666665543211 11111222211 2255566666666655422
Q ss_pred ---HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhh
Q 020091 264 ---GKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWR 325 (331)
Q Consensus 264 ---~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~ 325 (331)
..-+.+.+.+....|+..+|+.--..|+.+++.-....+.....++..++.++|.+-+++..
T Consensus 284 ~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 284 KTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred chhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22234455555555566666655555555555444444444445555555555555554433
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.58 E-value=8e-07 Score=84.95 Aligned_cols=165 Identities=16% Similarity=-0.017 Sum_probs=121.2
Q ss_pred CchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHH
Q 020091 78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAI 157 (331)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~ 157 (331)
.|+...|..+..+.++ +.+++..+..||++..+ .-=+++|.++.+.- +..|...+|....+.++++++.
T Consensus 437 lg~~~kaeei~~q~le---k~~d~~lyc~LGDv~~d----~s~yEkawElsn~~----sarA~r~~~~~~~~~~~fs~~~ 505 (777)
T KOG1128|consen 437 LGQHGKAEEINRQELE---KDPDPRLYCLLGDVLHD----PSLYEKAWELSNYI----SARAQRSLALLILSNKDFSEAD 505 (777)
T ss_pred hcccchHHHHHHHHhc---CCCcchhHHHhhhhccC----hHHHHHHHHHhhhh----hHHHHHhhccccccchhHHHHH
Confidence 4556666554444444 35678888888888766 43344444444322 4457788888888888899999
Q ss_pred HHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHH--HCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 158 SLYRQAAVLGDPAA-----------QPANAEEAVKLLYQAS--IAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 158 ~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
..++.+.++++... ...+.+.|..+|.+.+ ++++.+++.||...|.. .++..+|...++.|+.
T Consensus 506 ~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~----~~~k~ra~~~l~EAlK 581 (777)
T KOG1128|consen 506 KHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR----LKKKKRAFRKLKEALK 581 (777)
T ss_pred HHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH----HhhhHHHHHHHHHHhh
Confidence 99998888876554 6788888888888865 46899999999999986 7889999999999987
Q ss_pred C--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc
Q 020091 225 G--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 261 (331)
Q Consensus 225 ~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 261 (331)
. ++...+-|.-.+... ...+++|+..|.+-...
T Consensus 582 cn~~~w~iWENymlvsvd----vge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 582 CNYQHWQIWENYMLVSVD----VGEFEDAIKAYHRLLDL 616 (777)
T ss_pred cCCCCCeeeechhhhhhh----cccHHHHHHHHHHHHHh
Confidence 6 455555555555533 33899999999998765
No 116
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=3.8e-05 Score=69.41 Aligned_cols=219 Identities=13% Similarity=-0.026 Sum_probs=151.5
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA----- 171 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~----- 171 (331)
.|...+..+|.+++. .||+.+|+.-|+++...+ ...++=..|+++...|+++.-..+-.......+-.+
T Consensus 230 ~NvhLl~~lak~~~~----~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV 305 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYY----NGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFV 305 (564)
T ss_pred ccHHHHHHHhhhhhh----hcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhh
Confidence 477888899999998 899999999999887654 566666667777666665543333222222211111
Q ss_pred ------CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC-----------------
Q 020091 172 ------QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG----------------- 226 (331)
Q Consensus 172 ------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~----------------- 226 (331)
..+++..|+.+-+|+++. .+..++..-|.++.+ .++.++|+-.|+.|...-
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~----~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIA----LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHh----ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhh
Confidence 567777788777777764 467777777777766 566777777777764321
Q ss_pred -------------------CHHHHHHHH-HHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHH
Q 020091 227 -------------------YVRAMYNTS-LCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAV 284 (331)
Q Consensus 227 -------------------~~~a~~~lg-~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~ 284 (331)
++.++..+| .+... .+.-.++|..+++++..+ ++..|-..++.++..+|.++.++
T Consensus 382 ~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~---dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i 458 (564)
T KOG1174|consen 382 KRFKEANALANWTIRLFQNSARSLTLFGTLVLFP---DPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDII 458 (564)
T ss_pred chHHHHHHHHHHHHHHhhcchhhhhhhcceeecc---CchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHH
Confidence 222222222 11111 145668999999999877 67889999999999999999999
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 285 VYLELATRA-GETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 285 ~~~~~A~~~-~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
..+++++.. .+..-+..++.++. ...+.++++.-+...++.+|.
T Consensus 459 ~LLe~~L~~~~D~~LH~~Lgd~~~--A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 459 KLLEKHLIIFPDVNLHNHLGDIMR--AQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHhhccccHHHHHHHHHHH--HhhhHHHHHHHHHHHHhcCcc
Confidence 999999865 44555566666664 455678899999998888874
No 117
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.57 E-value=2e-06 Score=68.60 Aligned_cols=126 Identities=14% Similarity=0.086 Sum_probs=99.5
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-C----HHHHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLR-EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-S----TLAMV 141 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-~----~~a~~ 141 (331)
.+..+...+..++...+...+..+.+..++.. -..+.+.+|.++.. .+++++|...|+.+++.. + +.+.+
T Consensus 14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~----~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 14 LYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE----QGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 34555556678888888777777887766542 35788889999999 899999999999999875 2 35788
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 020091 142 DAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLR 221 (331)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~ 221 (331)
.|+.++...|++++|+..++...... -.+.+...+|.+|.. .+++++|+..|++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~----------------------~~~~~~~~~Gdi~~~----~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEA----------------------FKALAAELLGDIYLA----QGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcc----------------------hHHHHHHHHHHHHHH----CCCHHHHHHHHHH
Confidence 99999999999999999986632111 246677889999987 8999999999998
Q ss_pred HH
Q 020091 222 AA 223 (331)
Q Consensus 222 A~ 223 (331)
|+
T Consensus 144 Al 145 (145)
T PF09976_consen 144 AL 145 (145)
T ss_pred hC
Confidence 74
No 118
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.56 E-value=1e-05 Score=83.73 Aligned_cols=241 Identities=13% Similarity=0.036 Sum_probs=160.3
Q ss_pred ccCCchHHHhHHHHHHHHHHhCCCC---CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----CC----HHHHHHH
Q 020091 75 SFTLPQLRAASLVCKSWNDALRPLR---EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GS----TLAMVDA 143 (331)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a~~~l 143 (331)
.+..|++.+|...+...+...+... ...+...+|.++.. .+++++|..+++++... |. ..+..++
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~----~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l 537 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC----KGELARALAMMQQTEQMARQHDVYHYALWSLLQQ 537 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 4567899999888877766433322 12466788888887 89999999999998753 32 3466789
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCC-----C--------------CccCHHHHHHHHHHHHHC----C---CHHHHHH
Q 020091 144 GLMYWEMDKKEAAISLYRQAAVLGDPA-----A--------------QPANAEEAVKLLYQASIA----G---HVRAQYQ 197 (331)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~~~~~~~-----~--------------~~~~~~~A~~~~~~a~~~----~---~~~a~~~ 197 (331)
|.++...|++++|..+++++.+..... . ..+++++|..++.+++.. + ...++..
T Consensus 538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 617 (903)
T PRK04841 538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAM 617 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence 999999999999999999987752111 0 458899999999988653 1 2445666
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHC----CC-HHHHH---HHHHHHhcCCCccccHHHHHHHHHHHHHcC--CH---
Q 020091 198 LALCLHRGRGVDFNLQEAARWYLRAAEG----GY-VRAMY---NTSLCYSFGEGLPLSHRQARKWMKRAADCG--HG--- 264 (331)
Q Consensus 198 lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~~-~~a~~---~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~--- 264 (331)
+|.++.. .+++++|..++.++... +. ..... .+...+.... .+.+.|..|+....... ..
T Consensus 618 la~~~~~----~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~A~~~l~~~~~~~~~~~~~~ 690 (903)
T PRK04841 618 LAKISLA----RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT---GDKEAAANWLRQAPKPEFANNHFL 690 (903)
T ss_pred HHHHHHH----cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC---CCHHHHHHHHHhcCCCCCccchhH
Confidence 7888775 78999999999998543 11 11111 1111211112 37778888876654321 11
Q ss_pred -HHHHHHHHHHhccCCHHHHHHHHHHHHHc----CC--HHHHHHHHHHHhhhchhcHHHHHHHHHhhhc
Q 020091 265 -KAQLEHGLGLFTEGEMMKAVVYLELATRA----GE--TAADHVKNVILQQLSATSRDRAMLVVDSWRA 326 (331)
Q Consensus 265 -~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~----~~--~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~ 326 (331)
.....++.++...|++++|...++++... |. ..+...+.........++.++|...+.+.++
T Consensus 691 ~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 691 QGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11346788888888888998888888764 22 2333344444455566677778777777654
No 119
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.56 E-value=2.5e-06 Score=70.13 Aligned_cols=83 Identities=18% Similarity=0.153 Sum_probs=69.1
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--C
Q 020091 190 GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--G 262 (331)
Q Consensus 190 ~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~-----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~ 262 (331)
..+.+++++|..|.. .+++++|+.+|+++++.. ...+++++|.+|.. .+++++|+.+|++++.. .
T Consensus 33 ~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~ 104 (172)
T PRK02603 33 KEAFVYYRDGMSAQA----DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS----NGEHDKALEYYHQALELNPK 104 (172)
T ss_pred hhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcc
Confidence 467788999999986 789999999999998642 24689999999976 44999999999999887 5
Q ss_pred CHHHHHHHHHHHhccCCH
Q 020091 263 HGKAQLEHGLGLFTEGEM 280 (331)
Q Consensus 263 ~~~a~~~Lg~~~~~~~~~ 280 (331)
+..++..+|.++...|+.
T Consensus 105 ~~~~~~~lg~~~~~~g~~ 122 (172)
T PRK02603 105 QPSALNNIAVIYHKRGEK 122 (172)
T ss_pred cHHHHHHHHHHHHHcCCh
Confidence 678888999999887763
No 120
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.54 E-value=1.2e-06 Score=62.77 Aligned_cols=94 Identities=26% Similarity=0.320 Sum_probs=64.7
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHH
Q 020091 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAV 180 (331)
Q Consensus 103 a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~ 180 (331)
+++.+|.++.. .+++++|+.+|+++++.. ++.+++.+|.++...+++++|+.+|.+++...+
T Consensus 2 ~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~------------ 65 (100)
T cd00189 2 ALLNLGNLYYK----LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP------------ 65 (100)
T ss_pred HHHHHHHHHHH----HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------------
Confidence 35667777777 677777777777777654 446677777777777777777777777776654
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 181 KLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 181 ~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
.+..+++.+|.++.. .+++++|..++.++.+.
T Consensus 66 ---------~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 66 ---------DNAKAYYNLGLAYYK----LGKYEEALEAYEKALEL 97 (100)
T ss_pred ---------cchhHHHHHHHHHHH----HHhHHHHHHHHHHHHcc
Confidence 244666777777765 56677777777776543
No 121
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=5.7e-05 Score=64.13 Aligned_cols=141 Identities=16% Similarity=0.004 Sum_probs=68.3
Q ss_pred CCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHH
Q 020091 118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLY 184 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~ 184 (331)
.+..+-|..++.+.-+. |+....-.-|+.+...+++++|+++|...++.++.+. ..+..-+|++-+.
T Consensus 65 ~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln 144 (289)
T KOG3060|consen 65 TGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELN 144 (289)
T ss_pred hcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 45555566655554433 4555555556666666666666666666665544321 1111112222222
Q ss_pred HHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHH
Q 020091 185 QASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY--VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD 260 (331)
Q Consensus 185 ~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~--~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 260 (331)
.-.+ .++.+||..|+.+|.. .+++.+|.-+|+..+-... +.-...+|.+++...| ..|..-|..+|.+|++
T Consensus 145 ~YL~~F~~D~EAW~eLaeiY~~----~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg-~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 145 EYLDKFMNDQEAWHELAEIYLS----EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG-AENLELARKYYERALK 219 (289)
T ss_pred HHHHHhcCcHHHHHHHHHHHHh----HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHH
Confidence 2222 1455555556555554 4555555555555543322 2222345555433222 4455555555555555
Q ss_pred cCC
Q 020091 261 CGH 263 (331)
Q Consensus 261 ~~~ 263 (331)
...
T Consensus 220 l~~ 222 (289)
T KOG3060|consen 220 LNP 222 (289)
T ss_pred hCh
Confidence 533
No 122
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.49 E-value=3.9e-07 Score=65.50 Aligned_cols=81 Identities=11% Similarity=0.028 Sum_probs=68.7
Q ss_pred CchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHH
Q 020091 78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEA 155 (331)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~ 155 (331)
.++++.|+..+.++++..+...+...++.||.+|+. .+++++|+.++++ ... .++...+.+|.++...|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~----~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ----QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH----TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHH
Confidence 578999999999999998852267788889999999 9999999999998 433 467889999999999999999
Q ss_pred HHHHHHHH
Q 020091 156 AISLYRQA 163 (331)
Q Consensus 156 A~~~~~~a 163 (331)
|+..|+++
T Consensus 77 Ai~~l~~~ 84 (84)
T PF12895_consen 77 AIKALEKA 84 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 99999875
No 123
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.45 E-value=3e-06 Score=60.62 Aligned_cols=93 Identities=23% Similarity=0.181 Sum_probs=75.0
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHH
Q 020091 194 AQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLE 269 (331)
Q Consensus 194 a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~ 269 (331)
+++++|.++.. .+++++|+.+|+++++. .+..+++.+|.+|.. .+++++|..+|.++... .+..+++.
T Consensus 2 ~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 73 (100)
T cd00189 2 ALLNLGNLYYK----LGDYDEALEYYEKALELDPDNADAYYNLAAAYYK----LGKYEEALEDYEKALELDPDNAKAYYN 73 (100)
T ss_pred HHHHHHHHHHH----HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCCcchhHHHH
Confidence 46788888876 67899999999998875 345678888888876 45889999999998876 34567888
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcC
Q 020091 270 HGLGLFTEGEMMKAVVYLELATRAG 294 (331)
Q Consensus 270 Lg~~~~~~~~~~~A~~~~~~A~~~~ 294 (331)
+|.++...|++++|..++.++.+..
T Consensus 74 ~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 74 LGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHccC
Confidence 8999999999999999998887654
No 124
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.43 E-value=5.5e-06 Score=63.09 Aligned_cols=99 Identities=12% Similarity=0.077 Sum_probs=84.8
Q ss_pred HHHHHHHhccCCchHHHhHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-----CHHHH
Q 020091 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLR-EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAM 140 (331)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~ 140 (331)
..+..+...+..|++.+|...+..+.+..++.. .+.+++.+|.++.. .+++++|+.+|+.++... .+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA----QGKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 456667777889999999999999988766532 36789999999999 899999999999998752 36789
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 141 VDAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
+.+|.++...++.++|+.+|.++++..+.
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999988664
No 125
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.41 E-value=1.1e-06 Score=59.79 Aligned_cols=61 Identities=15% Similarity=0.272 Sum_probs=54.7
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 105 LRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 105 ~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
+.+|..+.. .+++++|+..|+++++.. ++.+++.+|.++...|++++|+.+|+++++..|.
T Consensus 1 ~~~a~~~~~----~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 1 YALARALYQ----QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHH----CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred ChHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 467888888 899999999999999885 8999999999999999999999999999988764
No 126
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.41 E-value=7.3e-06 Score=62.81 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=10.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHH
Q 020091 140 MVDAGLMYWEMDKKEAAISLYRQAAV 165 (331)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (331)
.|++|.++...|+.++|+.+|++++.
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~ 29 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALA 29 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 127
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.40 E-value=6.9e-05 Score=65.13 Aligned_cols=81 Identities=11% Similarity=0.003 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCcc
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--ST---LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPA 174 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~---~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 174 (331)
.+...|..|.-+.. .+++++|+..|++....- .+ .+.++||.+|++.+++++|+.+|++.+...|...
T Consensus 31 ~~~~~Y~~A~~~~~----~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~--- 103 (243)
T PRK10866 31 PPSEIYATAQQKLQ----DGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP--- 103 (243)
T ss_pred CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC---
Confidence 45566667777766 677777777777776642 22 3457788888888888888888887777765422
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 020091 175 NAEEAVKLLYQASIAGHVRAQYQLALCL 202 (331)
Q Consensus 175 ~~~~A~~~~~~a~~~~~~~a~~~lg~~y 202 (331)
..+.++|.+|.++
T Consensus 104 ---------------~~~~a~Y~~g~~~ 116 (243)
T PRK10866 104 ---------------NIDYVLYMRGLTN 116 (243)
T ss_pred ---------------chHHHHHHHHHhh
Confidence 3466777777664
No 128
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.40 E-value=1.4e-05 Score=65.46 Aligned_cols=111 Identities=14% Similarity=0.084 Sum_probs=80.9
Q ss_pred ccCHHHHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHhcCCC
Q 020091 173 PANAEEAVKLLYQASIA----GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--G---YVRAMYNTSLCYSFGEG 243 (331)
Q Consensus 173 ~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~---~~~a~~~lg~~y~~g~g 243 (331)
.+++..+..++...++. .....++++|.++.. .+++++|+.+|++++.. + .+.+++++|.+|..
T Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~--- 84 (168)
T CHL00033 12 DKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQS----EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS--- 84 (168)
T ss_pred ccccccchhhhhHhccCCchhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH---
Confidence 34455555555443322 235677899999976 78899999999999865 3 24588999999976
Q ss_pred ccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHh-------ccCCHHHHHHHHHHHH
Q 020091 244 LPLSHRQARKWMKRAADC--GHGKAQLEHGLGLF-------TEGEMMKAVVYLELAT 291 (331)
Q Consensus 244 ~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~-------~~~~~~~A~~~~~~A~ 291 (331)
.+++++|+.+|+++... .+..++.++|.++. ..|++++|+.++.+|.
T Consensus 85 -~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 85 -NGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred -cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 45999999999999876 45677888888888 7778776655555543
No 129
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.40 E-value=8.9e-06 Score=71.32 Aligned_cols=100 Identities=13% Similarity=0.028 Sum_probs=86.5
Q ss_pred HHHHHHHHhc-cCCchHHHhHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-----CCHH
Q 020091 66 FDVLNKIAAS-FTLPQLRAASLVCKSWNDALRPLRE-AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----GSTL 138 (331)
Q Consensus 66 ~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~-~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-----~~~~ 138 (331)
...+..+..+ +..+++++|...|..+++.-|+... +.++|.||.+|+. .+++++|+.+|++.++. ..++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~----~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN----KGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 4456666665 5679999999999999999887543 6899999999999 99999999999999964 2689
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 139 AMVDAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
+++.+|.++...|+.++|+..|+++++..|.
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 9999999999999999999999999987653
No 130
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.40 E-value=2e-05 Score=62.90 Aligned_cols=92 Identities=16% Similarity=-0.040 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC-C----HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc-CCHH
Q 020091 192 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-Y----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-GHGK 265 (331)
Q Consensus 192 ~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~-~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~ 265 (331)
..+.+.+|.++.. .+++++|+..|+.+++.. + ..+...|+.++.. .+++++|+..+...... -.+.
T Consensus 48 ~~A~l~lA~~~~~----~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~----~~~~d~Al~~L~~~~~~~~~~~ 119 (145)
T PF09976_consen 48 ALAALQLAKAAYE----QGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ----QGQYDEALATLQQIPDEAFKAL 119 (145)
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHhccCcchHHH
Confidence 4677888888886 789999999999998864 2 3467788999876 55999999999774333 2345
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHH
Q 020091 266 AQLEHGLGLFTEGEMMKAVVYLELAT 291 (331)
Q Consensus 266 a~~~Lg~~~~~~~~~~~A~~~~~~A~ 291 (331)
+...+|.+|...|++++|+..|++|+
T Consensus 120 ~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 120 AAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 66789999999999999999999874
No 131
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.39 E-value=9.5e-07 Score=62.41 Aligned_cols=62 Identities=21% Similarity=0.355 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----C-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (331)
+.++.++|.+|.. .+++++|+.+|++|++. | .+.++.++|.++...|++++|+.+|++++++
T Consensus 5 a~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRE----LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5678999999999 99999999999999864 3 2457889999999999999999999999865
No 132
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.38 E-value=9.1e-06 Score=62.26 Aligned_cols=98 Identities=17% Similarity=0.148 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCC-----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccC
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS-----TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPAN 175 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~-----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 175 (331)
|.++|.+|.++.. .|+.++|+.+|++|+..|. ..++..+|..+...|++++|+.++++++...+...
T Consensus 1 ~~~~~~~A~a~d~----~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~---- 72 (120)
T PF12688_consen 1 PRALYELAWAHDS----LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDE---- 72 (120)
T ss_pred CchHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc----
Confidence 3578899999998 9999999999999999872 35788999999999999999999999987644210
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 176 AEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 176 ~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
.+......++.++.+ .++.++|+.++-.++.
T Consensus 73 --------------~~~~l~~f~Al~L~~----~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 73 --------------LNAALRVFLALALYN----LGRPKEALEWLLEALA 103 (120)
T ss_pred --------------ccHHHHHHHHHHHHH----CCCHHHHHHHHHHHHH
Confidence 255666777887776 6789999999988764
No 133
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.38 E-value=0.00016 Score=68.85 Aligned_cols=81 Identities=15% Similarity=0.044 Sum_probs=59.6
Q ss_pred cccHHHHHHHHHHHHHcCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHH
Q 020091 245 PLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVD 322 (331)
Q Consensus 245 ~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~ 322 (331)
.++++.|..|...|++.-+ .+-+..-|.++...|++++|..|+..|-+.+..+-..|-.-+-..+...++++|.+++.
T Consensus 384 ~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~s 463 (700)
T KOG1156|consen 384 LGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLS 463 (700)
T ss_pred cccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHH
Confidence 4588888888888887644 34445567888889999999999999988887776655445555566667777777776
Q ss_pred hhh
Q 020091 323 SWR 325 (331)
Q Consensus 323 ~~~ 325 (331)
...
T Consensus 464 kFT 466 (700)
T KOG1156|consen 464 KFT 466 (700)
T ss_pred Hhh
Confidence 654
No 134
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.00018 Score=67.79 Aligned_cols=242 Identities=11% Similarity=0.022 Sum_probs=159.5
Q ss_pred hccCCchHHHhHHHHHHHHHHhCC-----------------------------CCCHHHHHHHHHHHhcCCCCCCCHHHH
Q 020091 74 ASFTLPQLRAASLVCKSWNDALRP-----------------------------LREAMVLLRWGKRFKHGRGVRKNLDKA 124 (331)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~-----------------------------~~~~~a~~~LG~~y~~g~g~~~~~~~A 124 (331)
-.+..++++++..+|..+.+...+ .+.-+.+|+.+.++.. .++|.+|
T Consensus 119 vlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~----~gky~qA 194 (652)
T KOG2376|consen 119 VLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIE----NGKYNQA 194 (652)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHh----cccHHHH
Confidence 356778888888888776443221 1133468999999998 8999999
Q ss_pred HHHHHHHHhC-------C----------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC----------------
Q 020091 125 LDSFLKGAAR-------G----------STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA---------------- 171 (331)
Q Consensus 125 ~~~~~~A~~~-------~----------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------- 171 (331)
++.+++|.+. + .......|++++...|+.++|...|...+..++.+.
T Consensus 195 ~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d 274 (652)
T KOG2376|consen 195 IELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKD 274 (652)
T ss_pred HHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccc
Confidence 9999999432 1 112446899999999999999999999988766665
Q ss_pred ------------------------------------------------------------------------------Cc
Q 020091 172 ------------------------------------------------------------------------------QP 173 (331)
Q Consensus 172 ------------------------------------------------------------------------------~~ 173 (331)
..
T Consensus 275 ~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~ 354 (652)
T KOG2376|consen 275 QNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVRE 354 (652)
T ss_pred cccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHH
Confidence 11
Q ss_pred cCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCCCHHHHHHHHH--------HHHHCCCHHHHHHHHHHHhcCC
Q 020091 174 ANAEEAVKLLYQASIAG---HVRAQYQLALCLHRGRGVDFNLQEAARWYL--------RAAEGGYVRAMYNTSLCYSFGE 242 (331)
Q Consensus 174 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~--------~A~~~~~~~a~~~lg~~y~~g~ 242 (331)
..+.++..++....+.. .......++.+... .+++..|++.+. ...+.++..+....+..+..+.
T Consensus 355 ~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is----~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~ 430 (652)
T KOG2376|consen 355 KKHKKAIELLLQFADGHPEKSKVVLLLRAQLKIS----QGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKI 430 (652)
T ss_pred HHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhc
Confidence 23555555555554431 23345555555554 788999999988 5566677776665555544432
Q ss_pred C----ccccHHHHHHHHHHHHHcCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHH
Q 020091 243 G----LPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDR 316 (331)
Q Consensus 243 g----~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~ 316 (331)
+ -..-..+|+.|++....... ...+..++.+-...|+.++|...|+...+..+.+...+...+. -+...|.++
T Consensus 431 ~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~-a~~~~d~ek 509 (652)
T KOG2376|consen 431 KDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVT-AYARLDPEK 509 (652)
T ss_pred cCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHH-HHHhcCHHH
Confidence 2 12335677777777643321 2233345555566799999999999999976666555444443 244556777
Q ss_pred HHHHHHhh
Q 020091 317 AMLVVDSW 324 (331)
Q Consensus 317 a~~~~~~~ 324 (331)
|..+-+++
T Consensus 510 a~~l~k~L 517 (652)
T KOG2376|consen 510 AESLSKKL 517 (652)
T ss_pred HHHHhhcC
Confidence 77666655
No 135
>PRK11906 transcriptional regulator; Provisional
Probab=98.37 E-value=4.8e-05 Score=70.37 Aligned_cols=143 Identities=9% Similarity=0.041 Sum_probs=105.4
Q ss_pred CHHHHHHHHHHHH-----HCCCHHHHHHHHHHHhc----CC-CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCC
Q 020091 175 NAEEAVKLLYQAS-----IAGHVRAQYQLALCLHR----GR-GVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGE 242 (331)
Q Consensus 175 ~~~~A~~~~~~a~-----~~~~~~a~~~lg~~y~~----G~-g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~ 242 (331)
+.+.|+.+|.+|+ +++++.++..++.+|.. |+ ....+..+|.+.-++|++. +|+.+...+|.++..
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~-- 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL-- 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--
Confidence 3444444444444 23678888888888765 34 3467788999999999886 688899999997644
Q ss_pred CccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHhhhchhcHHHHHH
Q 020091 243 GLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADH-VKNVILQQLSATSRDRAML 319 (331)
Q Consensus 243 g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~-~l~~~~~~l~~~~~~~a~~ 319 (331)
..+++.|..+|++|... +.+.+++.+|+++...|+.++|..++++|++..+..... .+.......-+.-++.++.
T Consensus 351 --~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (458)
T PRK11906 351 --SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIK 428 (458)
T ss_pred --hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHH
Confidence 44799999999999887 568889999999999999999999999999998865433 3333333444555556655
Q ss_pred HH
Q 020091 320 VV 321 (331)
Q Consensus 320 ~~ 321 (331)
++
T Consensus 429 ~~ 430 (458)
T PRK11906 429 LY 430 (458)
T ss_pred HH
Confidence 54
No 136
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.36 E-value=2.2e-06 Score=61.52 Aligned_cols=77 Identities=19% Similarity=0.207 Sum_probs=58.8
Q ss_pred CCCHHHHHHHHHHHHHCCC----HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHH
Q 020091 209 DFNLQEAARWYLRAAEGGY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMK 282 (331)
Q Consensus 209 ~~d~~~A~~~~~~A~~~~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~ 282 (331)
.+++++|+.+|+++++... ...++.+|.+|.. .+++++|+.++++ ... .+....+.+|.++...|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~----~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ----QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH----TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHH
Confidence 4678899999999877533 3456677999877 5589999999988 322 456778888999999999999
Q ss_pred HHHHHHHH
Q 020091 283 AVVYLELA 290 (331)
Q Consensus 283 A~~~~~~A 290 (331)
|+..|++|
T Consensus 77 Ai~~l~~~ 84 (84)
T PF12895_consen 77 AIKALEKA 84 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 99998875
No 137
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.34 E-value=0.00018 Score=69.62 Aligned_cols=217 Identities=13% Similarity=0.052 Sum_probs=169.2
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CCCC---
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLG--DPAA--- 171 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~~--- 171 (331)
.++..+-.|...... .|+++.+.+.|+++... +..+.++.++.+|..-|....|+...++....- ++..
T Consensus 321 nd~ai~d~Lt~al~~----~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSR----CGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred chHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 366667777777777 89999999999999864 678889999999999999999999999998776 3222
Q ss_pred ---------CccCHHHHHHHHHHHHHC-----C--CHHHHHHHHHHHhcCCCCCC-------CHHHHHHHHHHHHHC--C
Q 020091 172 ---------QPANAEEAVKLLYQASIA-----G--HVRAQYQLALCLHRGRGVDF-------NLQEAARWYLRAAEG--G 226 (331)
Q Consensus 172 ---------~~~~~~~A~~~~~~a~~~-----~--~~~a~~~lg~~y~~G~g~~~-------d~~~A~~~~~~A~~~--~ 226 (331)
..+..++++.|-.++++. + .+.++..+|.+|-.--.... ...+++..+++|++. .
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 789999999999999873 1 47788899999864221111 234778888888765 6
Q ss_pred CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 020091 227 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC---GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKN 303 (331)
Q Consensus 227 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~ 303 (331)
|+.+.++++.=|.. .++.+.|+.+.+++... .+..++..|+.++-.++++.+|+....-+++.-..+-.....
T Consensus 477 dp~~if~lalq~A~----~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~ 552 (799)
T KOG4162|consen 477 DPLVIFYLALQYAE----QRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDG 552 (799)
T ss_pred CchHHHHHHHHHHH----HHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchh
Confidence 88999999999976 67999999999999877 357888999999999999999999999998764444444445
Q ss_pred HHHhhhchhcHHHHHHHHHh
Q 020091 304 VILQQLSATSRDRAMLVVDS 323 (331)
Q Consensus 304 ~~~~~l~~~~~~~a~~~~~~ 323 (331)
.+...+.-++.+++......
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~ 572 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIH 572 (799)
T ss_pred hhhhhhhcccHHHHHHHHHH
Confidence 55555666666666554444
No 138
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.32 E-value=2.5e-05 Score=75.15 Aligned_cols=140 Identities=15% Similarity=-0.026 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhc--CCCC--CCCHHHHHHHHHHHHHC--
Q 020091 154 EAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHR--GRGV--DFNLQEAARWYLRAAEG-- 225 (331)
Q Consensus 154 ~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~--G~g~--~~d~~~A~~~~~~A~~~-- 225 (331)
-+|..+|.++...-. ....++..+|+.+|++|++ ++++.++-.++.+|.. +++. ..+..++.....++...
T Consensus 337 ~~Ay~~~lrg~~~~~-~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~ 415 (517)
T PRK10153 337 GAALTLFYQAHHYLN-SGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPE 415 (517)
T ss_pred HHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhccc
Confidence 345555555533311 1124445566666666554 3788888888887754 2221 12345667777776542
Q ss_pred --CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHH
Q 020091 226 --GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA 298 (331)
Q Consensus 226 --~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a 298 (331)
.++.++..+|.++.. .+++++|...|++|++.+ +..++..+|.++...|+.++|+.+|++|...++...
T Consensus 416 ~~~~~~~~~ala~~~~~----~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 416 LNVLPRIYEILAVQALV----KGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred CcCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 346777778888754 349999999999999884 577889999999999999999999999999876543
No 139
>PRK11906 transcriptional regulator; Provisional
Probab=98.32 E-value=5.5e-05 Score=69.97 Aligned_cols=168 Identities=11% Similarity=0.017 Sum_probs=118.0
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHH---hC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGA---AR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 103 a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~---~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
.+|..|...... +...+.+.|..+|.+|+ .. +.+.++..++.|++.. .-+|-.. .+.+..
T Consensus 257 d~ylrg~~~~~~-~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~-------------~~~g~~~-~~~~~~ 321 (458)
T PRK11906 257 DEMLAGKKELYD-FTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSL-------------ALHGKSE-LELAAQ 321 (458)
T ss_pred HHHHHHHHHhhc-cCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHH-------------HHhcCCC-chHHHH
Confidence 446666555442 45778889999999999 44 3788999999998764 0001111 233444
Q ss_pred HHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHH
Q 020091 178 EAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARK 253 (331)
Q Consensus 178 ~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~ 253 (331)
+|...-++|++. +++.|.+.+|.++.. .++++.|..+|++|... +.+.+++..|++... ..+.++|..
T Consensus 322 ~a~~~A~rAveld~~Da~a~~~~g~~~~~----~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~----~G~~~~a~~ 393 (458)
T PRK11906 322 KALELLDYVSDITTVDGKILAIMGLITGL----SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH----NEKIEEARI 393 (458)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHh----hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH----cCCHHHHHH
Confidence 445555554443 689999999998765 56799999999999876 678899999998765 459999999
Q ss_pred HHHHHHHcCCHHH---HHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 254 WMKRAADCGHGKA---QLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 254 ~~~~a~~~~~~~a---~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
++++|.+..+... ...+=.-.+...-.+.|+.+|-+-.+.
T Consensus 394 ~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (458)
T PRK11906 394 CIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETES 436 (458)
T ss_pred HHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhcccc
Confidence 9999999866432 233333144567788899888665554
No 140
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.32 E-value=0.00014 Score=61.44 Aligned_cols=177 Identities=15% Similarity=0.126 Sum_probs=113.5
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCc
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQP 173 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 173 (331)
..+..+|..|..++. .|++.+|+..|++....- -+.+++.+|.+++..+++++|+..|++-+...|...
T Consensus 3 ~~~~~lY~~a~~~~~----~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~-- 76 (203)
T PF13525_consen 3 DTAEALYQKALEALQ----QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP-- 76 (203)
T ss_dssp --HHHHHHHHHHHHH----CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T--
T ss_pred CCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc--
Confidence 367889999999999 899999999999998752 567899999999999999999999999988766321
Q ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC-CCC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccc
Q 020091 174 ANAEEAVKLLYQASIAGHVRAQYQLALCLHRG-RGV------DFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPL 246 (331)
Q Consensus 174 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G-~g~------~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~ 246 (331)
..+.+++.+|.++..- .+. +....+|+..|+..+.. | -. ..
T Consensus 77 ----------------~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~------------y-P~---S~ 124 (203)
T PF13525_consen 77 ----------------KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR------------Y-PN---SE 124 (203)
T ss_dssp ----------------THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH--------------TT---ST
T ss_pred ----------------chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHH------------C-cC---ch
Confidence 2356788888876431 011 22334566666666542 1 00 00
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc--CC---HHHHHHHHHHHhhhchhcH
Q 020091 247 SHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRA--GE---TAADHVKNVILQQLSATSR 314 (331)
Q Consensus 247 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~--~~---~~a~~~l~~~~~~l~~~~~ 314 (331)
-..+|...+... ...-..-.+.+|..|++.|.+.-|+..++.+++. +. ..+...+...+..+...+.
T Consensus 125 y~~~A~~~l~~l-~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 125 YAEEAKKRLAEL-RNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp THHHHHHHHHHH-HHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHH
Confidence 111222211111 1112344467888999999999999999999886 32 4566777777777766653
No 141
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.31 E-value=0.00024 Score=61.70 Aligned_cols=82 Identities=10% Similarity=-0.012 Sum_probs=68.3
Q ss_pred ChHHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCH-HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-----CCH
Q 020091 64 LPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREA-MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----GST 137 (331)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-----~~~ 137 (331)
.+......+...+..|++.+|...+..+....|....+ .+.+.||.+|+. .+++++|+.+|++.++. ..+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~----~~~y~~A~~~~e~fi~~~P~~~~~~ 106 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK----NADLPLAQAAIDRFIRLNPTHPNID 106 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCcCCCchH
Confidence 35566788888999999999999999999887765332 466999999999 89999999999999986 356
Q ss_pred HHHHHHHHHHhc
Q 020091 138 LAMVDAGLMYWE 149 (331)
Q Consensus 138 ~a~~~lg~~~~~ 149 (331)
.+++.+|.++..
T Consensus 107 ~a~Y~~g~~~~~ 118 (243)
T PRK10866 107 YVLYMRGLTNMA 118 (243)
T ss_pred HHHHHHHHhhhh
Confidence 789999988644
No 142
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=4.1e-05 Score=64.20 Aligned_cols=196 Identities=17% Similarity=0.134 Sum_probs=132.1
Q ss_pred CCCHHHHHHHHHHHHhC------C--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHC
Q 020091 118 RKNLDKALDSFLKGAAR------G--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIA 189 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~------~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~ 189 (331)
...+++|.++|.+|+.. . -.++....+.++.+.++..+|-..|-.|...- ...++++|+.++.++++-
T Consensus 27 ~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy----kk~~~~eAv~cL~~aieI 102 (288)
T KOG1586|consen 27 SNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY----KKVDPEEAVNCLEKAIEI 102 (288)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh----hccChHHHHHHHHHHHHH
Confidence 56999999999999864 1 23567788888888888888888888877654 456899999999998863
Q ss_pred ----CC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CC-HHHH-----HHHHHHHhcCCCccccHHHHHH
Q 020091 190 ----GH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GY-VRAM-----YNTSLCYSFGEGLPLSHRQARK 253 (331)
Q Consensus 190 ----~~----~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~-~~a~-----~~lg~~y~~g~g~~~~~~~A~~ 253 (331)
|. +.-+..+|.+|+.. ..|+.+|+.+|++|++- |+ ..+. ...+..- . ...++.+|+.
T Consensus 103 yt~~Grf~~aAk~~~~iaEiyEsd---l~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya-a---~leqY~~Ai~ 175 (288)
T KOG1586|consen 103 YTDMGRFTMAAKHHIEIAEIYESD---LQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA-A---QLEQYSKAID 175 (288)
T ss_pred HHhhhHHHHHHhhhhhHHHHHhhh---HHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH-H---HHHHHHHHHH
Confidence 32 22244688888863 58899999999999873 22 1121 1122211 1 1348889999
Q ss_pred HHHHHHHc--CCHH-------HHHHHHHHHhccCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHhhhchhcHHHHHHH
Q 020091 254 WMKRAADC--GHGK-------AQLEHGLGLFTEGEMMKAVVYLELATRAGE----TAADHVKNVILQQLSATSRDRAMLV 320 (331)
Q Consensus 254 ~~~~a~~~--~~~~-------a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~----~~a~~~l~~~~~~l~~~~~~~a~~~ 320 (331)
.|++.+.. ++.. -.+.-|.|+....|.-.+...+++-.+.+| ..-+..+..+..-+...+.+.=-+.
T Consensus 176 iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d~e~fte~ 255 (288)
T KOG1586|consen 176 IYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQDIEKFTEV 255 (288)
T ss_pred HHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 99887654 4432 234567777777777766666666666654 4456667777777777766655555
Q ss_pred HHhh
Q 020091 321 VDSW 324 (331)
Q Consensus 321 ~~~~ 324 (331)
+.++
T Consensus 256 vkef 259 (288)
T KOG1586|consen 256 VKEF 259 (288)
T ss_pred HHhh
Confidence 5544
No 143
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.30 E-value=1.4e-05 Score=69.47 Aligned_cols=120 Identities=18% Similarity=0.113 Sum_probs=94.4
Q ss_pred CCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHH
Q 020091 118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQ 195 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~ 195 (331)
.++|.+|+..|.+|+... ++.-+.+-+-.|.+.|.++.|++-++.|+.+++ .+..+|
T Consensus 94 ~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp---------------------~yskay 152 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP---------------------HYSKAY 152 (304)
T ss_pred hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh---------------------HHHHHH
Confidence 689999999999999986 777888999999999999999999999999877 488999
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC
Q 020091 196 YQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH 263 (331)
Q Consensus 196 ~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 263 (331)
..||.+|.. .+++.+|++.|++|++. .+.....+|.+.-.. ...++....+..-+..+...|.
T Consensus 153 ~RLG~A~~~----~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~-l~e~~~~~~~~~~~d~~~~ig~ 217 (304)
T KOG0553|consen 153 GRLGLAYLA----LGKYEEAIEAYKKALELDPDNESYKSNLKIAEQK-LNEPKSSAQASGSFDMAGLIGA 217 (304)
T ss_pred HHHHHHHHc----cCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH-hcCCCcccccccchhhhhhccC
Confidence 999999987 78899999999999886 455556666666532 2223334445555555555554
No 144
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.30 E-value=9.7e-05 Score=70.80 Aligned_cols=219 Identities=13% Similarity=0.085 Sum_probs=149.7
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC------
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA------ 171 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~------ 171 (331)
+.+.+.....++.. .|++++|++++...... +....+-..|.++...|++++|...|+..++.+|.+.
T Consensus 3 ~SE~lLY~~~il~e----~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L 78 (517)
T PF12569_consen 3 HSELLLYKNSILEE----AGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGL 78 (517)
T ss_pred HHHHHHHHHHHHHH----CCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 34556666777777 79999999999886654 4556677899999999999999999999999988776
Q ss_pred ----------CccCHHHHHHHHHHHHHC-CCHHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHh
Q 020091 172 ----------QPANAEEAVKLLYQASIA-GHVRAQYQLALCLHRGRGVDFNL-QEAARWYLRAAEGGYVRAMYNTSLCYS 239 (331)
Q Consensus 172 ----------~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~G~g~~~d~-~~A~~~~~~A~~~~~~~a~~~lg~~y~ 239 (331)
...+.+.-..+|.+.... -...+.-.+...+..| ..+ ..+..|++..+..|-|....+|--+|.
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g----~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~ 154 (517)
T PF12569_consen 79 EEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEG----DEFKERLDEYLRPQLRKGVPSLFSNLKPLYK 154 (517)
T ss_pred HHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCH----HHHHHHHHHHHHHHHhcCCchHHHHHHHHHc
Confidence 112456666677665443 2233444555555443 233 356677778888899999899988885
Q ss_pred cCCCccccHHHHHHHHHH---HHHc------------CCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHH
Q 020091 240 FGEGLPLSHRQARKWMKR---AADC------------GHG----KAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADH 300 (331)
Q Consensus 240 ~g~g~~~~~~~A~~~~~~---a~~~------------~~~----~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~ 300 (331)
.- ....--...+.. ..+. .++ .+++.|+..|...|++++|+.+..+|++..+.....
T Consensus 155 d~----~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~el 230 (517)
T PF12569_consen 155 DP----EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVEL 230 (517)
T ss_pred Ch----hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHH
Confidence 31 111111111111 1110 112 245778999999999999999999999998765555
Q ss_pred HHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 301 VKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 301 ~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
.+...-..-..|++.+|.+.+++.+.+.+.
T Consensus 231 y~~KarilKh~G~~~~Aa~~~~~Ar~LD~~ 260 (517)
T PF12569_consen 231 YMTKARILKHAGDLKEAAEAMDEARELDLA 260 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCChh
Confidence 444444444668889999998888776553
No 145
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.30 E-value=0.00022 Score=73.98 Aligned_cols=238 Identities=11% Similarity=-0.012 Sum_probs=131.7
Q ss_pred cCCchHHHhHHHHHHHHHHhCCCC-------CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC---CC----HHHHH
Q 020091 76 FTLPQLRAASLVCKSWNDALRPLR-------EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---GS----TLAMV 141 (331)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~-------~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~---~~----~~a~~ 141 (331)
+..+++.++...+..........+ .......+|.++.. .+++++|..+++++... ++ ..+..
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 495 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN----DGDPEEAERLAELALAELPLTWYYSRIVATS 495 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 455677777666655544332211 23344556777766 78888888888888763 12 23556
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------------CccCHHHHHHHHHHHHHC----CC------HHH
Q 020091 142 DAGLMYWEMDKKEAAISLYRQAAVLGDPAA-----------------QPANAEEAVKLLYQASIA----GH------VRA 194 (331)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------------~~~~~~~A~~~~~~a~~~----~~------~~a 194 (331)
.+|.++...|++++|..+++++........ ..+++++|..+++++.+. +. ...
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 575 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFL 575 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 788888888888888888888875422111 456777777777776542 11 122
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----C---CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc----CC
Q 020091 195 QYQLALCLHRGRGVDFNLQEAARWYLRAAEG----G---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH 263 (331)
Q Consensus 195 ~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~ 263 (331)
...+|.++.. .+++++|..++.+++.. + ...++..+|.++.. ..++++|..++.++... +.
T Consensus 576 ~~~la~~~~~----~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~----~G~~~~A~~~l~~a~~~~~~~~~ 647 (903)
T PRK04841 576 LRIRAQLLWE----WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA----RGDLDNARRYLNRLENLLGNGRY 647 (903)
T ss_pred HHHHHHHHHH----hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhcccc
Confidence 3455665554 56777777777777542 1 13334455666543 33777777777776443 11
Q ss_pred -HHHHH---H-HHHHHhccCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHhhhchhcHHHHHHHHHhhh
Q 020091 264 -GKAQL---E-HGLGLFTEGEMMKAVVYLELATRAGETAA----DHVKNVILQQLSATSRDRAMLVVDSWR 325 (331)
Q Consensus 264 -~~a~~---~-Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a----~~~l~~~~~~l~~~~~~~a~~~~~~~~ 325 (331)
..... . ....+...|+.+.|..++........... .............++.++|...+++.+
T Consensus 648 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al 718 (903)
T PRK04841 648 HSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELN 718 (903)
T ss_pred cHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11100 0 11223346677777777655443211110 011222223344455566666666654
No 146
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=2.1e-05 Score=68.53 Aligned_cols=121 Identities=12% Similarity=0.048 Sum_probs=102.2
Q ss_pred CccCHHHHHHHHHHHH--HCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCcccc
Q 020091 172 QPANAEEAVKLLYQAS--IAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLS 247 (331)
Q Consensus 172 ~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~ 247 (331)
.....+.-+.-++..+ ++++++.|..||.+|.. .++++.|..-|++|... +++..+..+|.++....| ..+
T Consensus 134 ~~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~----~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~-~~~ 208 (287)
T COG4235 134 AEQEMEALIARLETHLQQNPGDAEGWDLLGRAYMA----LGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAG-QQM 208 (287)
T ss_pred CcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----hcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-Ccc
Confidence 3444556565565543 45899999999999997 89999999999999876 678888899988877665 779
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHH
Q 020091 248 HRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA 297 (331)
Q Consensus 248 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~ 297 (331)
..++...|++++.. .+..+.+.||..++.+|++.+|...++..++..+.+
T Consensus 209 ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 209 TAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred cHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 99999999999987 568899999999999999999999999999986543
No 147
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=0.00019 Score=60.97 Aligned_cols=161 Identities=15% Similarity=0.040 Sum_probs=101.3
Q ss_pred hHHHHHHHH-hccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCH---HHH
Q 020091 65 PFDVLNKIA-ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGST---LAM 140 (331)
Q Consensus 65 ~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~---~a~ 140 (331)
.+.++.+.+ ..+..+...-|......+....+. .....-.-|..+.. .+++++|+++|...++.+-. .--
T Consensus 51 ~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~--S~RV~~lkam~lEa----~~~~~~A~e~y~~lL~ddpt~~v~~K 124 (289)
T KOG3060|consen 51 IWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG--SKRVGKLKAMLLEA----TGNYKEAIEYYESLLEDDPTDTVIRK 124 (289)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC--ChhHHHHHHHHHHH----hhchhhHHHHHHHHhccCcchhHHHH
Confidence 344444443 456778888888887777777654 44444445777777 89999999999888765411 112
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHH--HCCCHHHHHHHHHHHhc-CC
Q 020091 141 VDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQAS--IAGHVRAQYQLALCLHR-GR 206 (331)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~-G~ 206 (331)
..++.+-..|++ -+||+-...-++.-..+. ..+++++|..+|++.+ .+-++.-.-.||.++.. |
T Consensus 125 RKlAilka~GK~-l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~g- 202 (289)
T KOG3060|consen 125 RKLAILKAQGKN-LEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQG- 202 (289)
T ss_pred HHHHHHHHcCCc-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh-
Confidence 344444433333 356655555555433332 5666667777776643 33566667789987644 3
Q ss_pred CCCCCHHHHHHHHHHHHHCCC--HHHHHHH
Q 020091 207 GVDFNLQEAARWYLRAAEGGY--VRAMYNT 234 (331)
Q Consensus 207 g~~~d~~~A~~~~~~A~~~~~--~~a~~~l 234 (331)
...++.-|.+||.+|++... ..+++.+
T Consensus 203 -g~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 203 -GAENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred -hHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 27789999999999999854 4444444
No 148
>PRK15331 chaperone protein SicA; Provisional
Probab=98.27 E-value=1.9e-05 Score=63.20 Aligned_cols=97 Identities=15% Similarity=0.034 Sum_probs=80.3
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
.-+..|..|.-+++ .|++++|...|+-.+..+ +++-++.||.++...+++++|+..|-.|..++.
T Consensus 36 ~le~iY~~Ay~~y~----~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~--------- 102 (165)
T PRK15331 36 MMDGLYAHAYEFYN----QGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK--------- 102 (165)
T ss_pred HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---------
Confidence 45667888877777 799999999999887765 777788888899888888888888888887654
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 178 EAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 178 ~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
++|...+..|.||.. .++..+|..+|..+++.
T Consensus 103 ------------~dp~p~f~agqC~l~----l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 103 ------------NDYRPVFFTGQCQLL----MRKAAKARQCFELVNER 134 (165)
T ss_pred ------------CCCCccchHHHHHHH----hCCHHHHHHHHHHHHhC
Confidence 578888999999986 78899999999998875
No 149
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.26 E-value=2.1e-05 Score=67.74 Aligned_cols=99 Identities=9% Similarity=0.066 Sum_probs=89.8
Q ss_pred HHHHHHHhccCCchHHHhHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-----CCHHHH
Q 020091 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLR-EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----GSTLAM 140 (331)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-----~~~~a~ 140 (331)
..+..+..++..|++..|...|..+++.-|+.. -+.|+|+||.+++. .+|++.|...|...++. .-|+++
T Consensus 143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~----qg~y~~Aa~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA----QGDYEDAAYIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh----cccchHHHHHHHHHHHhCCCCCCChHHH
Confidence 368888999999999999999999999988743 67899999999999 99999999999999875 378999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 141 VDAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
+.||.+..+.++.++|...|++.+..-|.
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999988764
No 150
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.25 E-value=3.1e-05 Score=67.90 Aligned_cols=99 Identities=13% Similarity=0.092 Sum_probs=73.7
Q ss_pred HHHHHHHHHHH-hcCCCCCCCHHHHHHHHHHHHhCC--C---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCcc
Q 020091 101 AMVLLRWGKRF-KHGRGVRKNLDKALDSFLKGAARG--S---TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPA 174 (331)
Q Consensus 101 ~~a~~~LG~~y-~~g~g~~~~~~~A~~~~~~A~~~~--~---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 174 (331)
....|..+..+ .. .+++++|+..|+..+..- + +.+++.||.+|+..|++++|+..|++++...+...
T Consensus 142 e~~~Y~~A~~l~~~----~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~--- 214 (263)
T PRK10803 142 ANTDYNAAIALVQD----KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP--- 214 (263)
T ss_pred HHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc---
Confidence 45666666654 44 478888888888888652 2 57888888888888888888888888887654311
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 175 NAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 175 ~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
..+++++.+|.+|.. .+++++|+..|++.++.
T Consensus 215 ---------------~~~dAl~klg~~~~~----~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 215 ---------------KAADAMFKVGVIMQD----KGDTAKAKAVYQQVIKK 246 (263)
T ss_pred ---------------chhHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 357888888888875 67888888888888764
No 151
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.23 E-value=1.7e-05 Score=68.82 Aligned_cols=113 Identities=15% Similarity=0.092 Sum_probs=94.8
Q ss_pred HHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHH
Q 020091 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAG 144 (331)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg 144 (331)
.+-.+...+++.++|.+|+..|...++..| .++..+.+-+-.|.+ .+.++.|++-.+.|+..+ +..++..||
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P--~nAVyycNRAAAy~~----Lg~~~~AVkDce~Al~iDp~yskay~RLG 156 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDP--TNAVYYCNRAAAYSK----LGEYEDAVKDCESALSIDPHYSKAYGRLG 156 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHH----hcchHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 344455567888999999998888888765 489999999999999 999999999999999987 778999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHH
Q 020091 145 LMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASI 188 (331)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~ 188 (331)
..|..+|++++|+..|++|+++++.+. .+++.+.+-++.+.
T Consensus 157 ~A~~~~gk~~~A~~aykKaLeldP~Ne---~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 157 LAYLALGKYEEAIEAYKKALELDPDNE---SYKSNLKIAEQKLN 197 (304)
T ss_pred HHHHccCcHHHHHHHHHhhhccCCCcH---HHHHHHHHHHHHhc
Confidence 999999999999999999999988543 55555555555544
No 152
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.21 E-value=0.0041 Score=56.24 Aligned_cols=214 Identities=10% Similarity=-0.062 Sum_probs=144.6
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHH-HHHhcCCCHHHHHHHHHHHHHcCCCCC----------
Q 020091 104 LLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMVDAG-LMYWEMDKKEAAISLYRQAAVLGDPAA---------- 171 (331)
Q Consensus 104 ~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~lg-~~~~~~~~~~~A~~~~~~a~~~~~~~~---------- 171 (331)
...=|.+-.. .|||.+|.....++++.+ .|...+.+| ..-...||.+.|=.|..++.+..++..
T Consensus 87 ~~~egl~~l~----eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarl 162 (400)
T COG3071 87 ALNEGLLKLF----EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARL 162 (400)
T ss_pred HHHHHHHHHh----cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 3344555555 799999999999999988 444444444 444556999999999999999844333
Q ss_pred --CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC---------------------
Q 020091 172 --QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--------------------- 226 (331)
Q Consensus 172 --~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~--------------------- 226 (331)
..+|+..|..-..++.+. .++.+....-.+|.. .+++.....++.+..+.+
T Consensus 163 ll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~----~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q 238 (400)
T COG3071 163 LLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIR----LGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQ 238 (400)
T ss_pred HHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHH----hccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHH
Confidence 678888888888887765 578888777778776 667776666655543321
Q ss_pred -----------------------CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCHHHH
Q 020091 227 -----------------------YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKA 283 (331)
Q Consensus 227 -----------------------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A 283 (331)
++.....++.-+.. -+++++|.++.+.+.......-...+.- ....++...=
T Consensus 239 ~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~----l~~~~~A~~~i~~~Lk~~~D~~L~~~~~-~l~~~d~~~l 313 (400)
T COG3071 239 ARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIR----LGDHDEAQEIIEDALKRQWDPRLCRLIP-RLRPGDPEPL 313 (400)
T ss_pred HhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHH----cCChHHHHHHHHHHHHhccChhHHHHHh-hcCCCCchHH
Confidence 12222222222222 3477888888888877643333332222 2336677777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 284 VVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 284 ~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
++..++.+...+.+++.++..+...+....-.+|...++..+...|+
T Consensus 314 ~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s 360 (400)
T COG3071 314 IKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS 360 (400)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC
Confidence 77777777776666677777777788888999999999887665554
No 153
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.19 E-value=6.6e-06 Score=55.80 Aligned_cols=60 Identities=17% Similarity=0.075 Sum_probs=45.6
Q ss_pred HHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCH
Q 020091 233 NTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET 296 (331)
Q Consensus 233 ~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~ 296 (331)
.+|..+.. .+++++|+..|++++.. +++.+++.+|.++..+|++++|+.+|+++++..+.
T Consensus 2 ~~a~~~~~----~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 2 ALARALYQ----QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHH----CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 45666655 44888888888888877 45778888888888888888888888888876654
No 154
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.19 E-value=0.00027 Score=69.03 Aligned_cols=110 Identities=20% Similarity=0.281 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----------------------CCHHHHHHHHHHHhcCCCHHHHHHH
Q 020091 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----------------------GSTLAMVDAGLMYWEMDKKEAAISL 159 (331)
Q Consensus 102 ~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----------------------~~~~a~~~lg~~~~~~~~~~~A~~~ 159 (331)
..+|+.+..... .+|.+.|++||+++-.. .++.-+..-|..+...|+.+-|+.+
T Consensus 859 ~Tyy~yA~~Lea----r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~ 934 (1416)
T KOG3617|consen 859 NTYYNYAKYLEA----RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSF 934 (1416)
T ss_pred hhHHHHHHHHHh----hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHH
Confidence 356666666666 67788888888776211 2344445666666667778888887
Q ss_pred HHHHHHcCCCC---CCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 020091 160 YRQAAVLGDPA---AQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRA 222 (331)
Q Consensus 160 ~~~a~~~~~~~---~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A 222 (331)
|..|-+.-.-- ...++..+|-.+ |-+.|+-.|.|.||++|++ .++..+|+.+|.+|
T Consensus 935 Y~~A~D~fs~VrI~C~qGk~~kAa~i---A~esgd~AAcYhlaR~YEn----~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 935 YSSAKDYFSMVRIKCIQGKTDKAARI---AEESGDKAACYHLARMYEN----DGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHhhhhhhheeeEeeccCchHHHHH---HHhcccHHHHHHHHHHhhh----hHHHHHHHHHHHHH
Confidence 77775432111 145555555543 2345899999999999998 88999999999998
No 155
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.00058 Score=64.45 Aligned_cols=212 Identities=10% Similarity=0.026 Sum_probs=137.9
Q ss_pred HHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH--hCCCHHHHHHH
Q 020091 66 FDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGA--ARGSTLAMVDA 143 (331)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~--~~~~~~a~~~l 143 (331)
.+.+..+..+...+++++|+..+.+++...++..++.-|-.++.| + ...|++|....++-- ..++... +.-
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValI--q----~~ky~~ALk~ikk~~~~~~~~~~~-fEK 85 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALI--Q----LDKYEDALKLIKKNGALLVINSFF-FEK 85 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhh--h----hhHHHHHHHHHHhcchhhhcchhh-HHH
Confidence 456777777889999999999999999998775444444444444 4 678999986655422 2232222 688
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCC---------CccCHHHHHHHHHHHHHCCC--HHHHHHHHHHHhcCCCCCCCH
Q 020091 144 GLMYWEMDKKEAAISLYRQAAVLGDPAA---------QPANAEEAVKLLYQASIAGH--VRAQYQLALCLHRGRGVDFNL 212 (331)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~~~~~~~~---------~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~y~~G~g~~~d~ 212 (331)
++|.++.+..++|+..+. .++..++.. ..++|++|+..|+..++.+. .+.....+..-.. .
T Consensus 86 AYc~Yrlnk~Dealk~~~-~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~-------a 157 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLK-GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA-------A 157 (652)
T ss_pred HHHHHHcccHHHHHHHHh-cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-------H
Confidence 999999999999999998 333222211 67788888888888776543 3333322222111 1
Q ss_pred HHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc-------CC----------HHHHHHHHHH
Q 020091 213 QEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-------GH----------GKAQLEHGLG 273 (331)
Q Consensus 213 ~~A~~~~~~A~~--~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~----------~~a~~~Lg~~ 273 (331)
.-...+.+...+ .+..+.+||.+.++.. ..++.+|++.++.|... ++ ......|+++
T Consensus 158 ~l~~~~~q~v~~v~e~syel~yN~Ac~~i~----~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV 233 (652)
T KOG2376|consen 158 ALQVQLLQSVPEVPEDSYELLYNTACILIE----NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV 233 (652)
T ss_pred hhhHHHHHhccCCCcchHHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence 111123333322 3567788888888865 34888888888888321 11 1233568888
Q ss_pred HhccCCHHHHHHHHHHHHHcCCH
Q 020091 274 LFTEGEMMKAVVYLELATRAGET 296 (331)
Q Consensus 274 ~~~~~~~~~A~~~~~~A~~~~~~ 296 (331)
+-.+|+.++|...|...+..+..
T Consensus 234 lQ~~Gqt~ea~~iy~~~i~~~~~ 256 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDIIKRNPA 256 (652)
T ss_pred HHHhcchHHHHHHHHHHHHhcCC
Confidence 88888888888888888776543
No 156
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=98.16 E-value=4.7e-06 Score=49.23 Aligned_cols=36 Identities=36% Similarity=0.584 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCC
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS 136 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~ 136 (331)
+.+++.||.+|..|.|+..|..+|+.||++|++.|+
T Consensus 1 ~~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g~ 36 (36)
T smart00671 1 AEAQYNLGQMYEYGLGVKKDLEKALEYYKKAAELGN 36 (36)
T ss_pred CHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHccC
Confidence 368999999999999999999999999999998874
No 157
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=98.14 E-value=4.9e-06 Score=49.14 Aligned_cols=34 Identities=41% Similarity=0.589 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC
Q 020091 193 RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG 226 (331)
Q Consensus 193 ~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~ 226 (331)
.++++||.+|..|.|+.+|..+|+.||++|++.|
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g 35 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAELG 35 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHcc
Confidence 4566677776666666667777777777666654
No 158
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.0012 Score=55.62 Aligned_cols=16 Identities=25% Similarity=0.131 Sum_probs=8.7
Q ss_pred ccCHHHHHHHHHHHHH
Q 020091 173 PANAEEAVKLLYQASI 188 (331)
Q Consensus 173 ~~~~~~A~~~~~~a~~ 188 (331)
..|+++|+.+|++|++
T Consensus 127 l~d~ekaI~~YE~Aae 142 (288)
T KOG1586|consen 127 LQDFEKAIAHYEQAAE 142 (288)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3555555555555554
No 159
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.14 E-value=0.00016 Score=64.37 Aligned_cols=192 Identities=19% Similarity=0.114 Sum_probs=134.0
Q ss_pred HHHHhccCCchHHHhHHHHHHHHHHhCCCCCHH----HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC------CC---
Q 020091 70 NKIAASFTLPQLRAASLVCKSWNDALRPLREAM----VLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR------GS--- 136 (331)
Q Consensus 70 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~------~~--- 136 (331)
.-...++..+.+++++..+...++-+-+.+++. .+..||.+|-. .+|++||.-+..+|++. ++
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~----l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ----LKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH----HHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 334456677888888888888887777666654 67888888887 88999999888888764 22
Q ss_pred ---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCC----HHHHHHHHHHHhcCCCCC
Q 020091 137 ---TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGH----VRAQYQLALCLHRGRGVD 209 (331)
Q Consensus 137 ---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~y~~G~g~~ 209 (331)
..+++.|+..+...|+.-.|.++.++|.++ ++..|+ +..+.-+|.+|.+ .
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl-------------------al~~Gdra~~arc~~~~aDIyR~----~ 259 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL-------------------ALQHGDRALQARCLLCFADIYRS----R 259 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH-------------------HHHhCChHHHHHHHHHHHHHHHh----c
Confidence 235677888887778887787777776554 344454 4556789999998 8
Q ss_pred CCHHHHHHHHHHHHH--------CCCHHHHHHHHHHHhcCCCccccH-----HHHHHHHHHHHHc----CCH----HHHH
Q 020091 210 FNLQEAARWYLRAAE--------GGYVRAMYNTSLCYSFGEGLPLSH-----RQARKWMKRAADC----GHG----KAQL 268 (331)
Q Consensus 210 ~d~~~A~~~~~~A~~--------~~~~~a~~~lg~~y~~g~g~~~~~-----~~A~~~~~~a~~~----~~~----~a~~ 268 (331)
+|.+.|+.-|++|.. .|...++...+.++.. .+-. =.|+++-+++++. |.. ..+.
T Consensus 260 gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~----~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hc 335 (518)
T KOG1941|consen 260 GDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLET----LRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHC 335 (518)
T ss_pred ccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH----HHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 899999999999853 2456667777777643 1122 2366666665543 432 3446
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHH
Q 020091 269 EHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 269 ~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
.|+.+|...|.-++--..+.+|-+
T Consensus 336 rla~iYrs~gl~d~~~~h~~ra~~ 359 (518)
T KOG1941|consen 336 RLASIYRSKGLQDELRAHVVRAHE 359 (518)
T ss_pred HHHHHHHhccchhHHHHHHHHHHH
Confidence 789999888877776666666543
No 160
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=4.8e-05 Score=68.78 Aligned_cols=106 Identities=12% Similarity=0.051 Sum_probs=84.9
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-C----------------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 020091 105 LRWGKRFKHGRGVRKNLDKALDSFLKGAAR-G----------------STLAMVDAGLMYWEMDKKEAAISLYRQAAVLG 167 (331)
Q Consensus 105 ~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-~----------------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~ 167 (331)
-.-|..|+. .+++..|..-|++|+.. + -..++.||+.||.+.+++.+|+.++.++++++
T Consensus 212 ke~Gn~~fK----~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 212 KERGNVLFK----EGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHhhhHHHh----hchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 334777888 78999999999988753 1 12467899999999999999999999999887
Q ss_pred CCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHh
Q 020091 168 DPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYS 239 (331)
Q Consensus 168 ~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~ 239 (331)
+ +++.|+|.-|.+|.. .++++.|+..|++|++. ++-.+...|..|-.
T Consensus 288 ~---------------------~N~KALyRrG~A~l~----~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 288 P---------------------NNVKALYRRGQALLA----LGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred C---------------------CchhHHHHHHHHHHh----hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 7 689999999999986 78899999999999765 56666666666653
No 161
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.12 E-value=0.00015 Score=70.64 Aligned_cols=164 Identities=15% Similarity=0.035 Sum_probs=101.4
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC-CCccCHHHHHHHHHHHHHCCCHHHHH
Q 020091 118 RKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPA-AQPANAEEAVKLLYQASIAGHVRAQY 196 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~A~~~~~~a~~~~~~~a~~ 196 (331)
.|.+++|++.-+---....-..+++.+.-+...+|.+.|+++|+|+-...... ....++-++++.|-+ ...++.-+.
T Consensus 839 ~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~--~~~d~~L~~ 916 (1416)
T KOG3617|consen 839 QGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVR--RKRDESLYS 916 (1416)
T ss_pred cccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHH--hccchHHHH
Confidence 44444444433322222344567777777777888999999998863210000 022223333333322 224567777
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHH-----------------------CCCHHHHHHHHHHHhcCCCccccHHHHHH
Q 020091 197 QLALCLHRGRGVDFNLQEAARWYLRAAE-----------------------GGYVRAMYNTSLCYSFGEGLPLSHRQARK 253 (331)
Q Consensus 197 ~lg~~y~~G~g~~~d~~~A~~~~~~A~~-----------------------~~~~~a~~~lg~~y~~g~g~~~~~~~A~~ 253 (331)
.+|..++. .++.+-|+.+|..|-+ .|+.-|+|.||..|.+ ..+..+|..
T Consensus 917 WWgqYlES----~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn----~g~v~~Av~ 988 (1416)
T KOG3617|consen 917 WWGQYLES----VGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYEN----DGDVVKAVK 988 (1416)
T ss_pred HHHHHHhc----ccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhh----hHHHHHHHH
Confidence 88888876 7888888888887632 4788999999999976 348999999
Q ss_pred HHHHHHHcC----------CHHHH------------HHHHHHHhccC-CHHHHHHHHHHHH
Q 020091 254 WMKRAADCG----------HGKAQ------------LEHGLGLFTEG-EMMKAVVYLELAT 291 (331)
Q Consensus 254 ~~~~a~~~~----------~~~a~------------~~Lg~~~~~~~-~~~~A~~~~~~A~ 291 (331)
+|.+|-... -.+-. ...+.+|.+.| +..+|...|-+|-
T Consensus 989 FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAG 1049 (1416)
T KOG3617|consen 989 FFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAG 1049 (1416)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhc
Confidence 999874321 12222 22344454555 7788888776654
No 162
>PRK15331 chaperone protein SicA; Provisional
Probab=98.11 E-value=1.9e-05 Score=63.08 Aligned_cols=93 Identities=11% Similarity=0.012 Sum_probs=80.8
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGL 145 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~ 145 (331)
+...+...+..|++++|..++.-+... +..++.-+..||-++.. .+++++|+..|..|... ++|...+.+|.
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~----~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQL----KKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 355667789999999998887655543 45689999999999999 99999999999999865 59999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHc
Q 020091 146 MYWEMDKKEAAISLYRQAAVL 166 (331)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~ 166 (331)
||...++.++|+..|..+++.
T Consensus 114 C~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHhC
Confidence 999999999999999999884
No 163
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=3.7e-05 Score=66.73 Aligned_cols=186 Identities=11% Similarity=-0.027 Sum_probs=126.1
Q ss_pred hccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHH--HHHHhcCC
Q 020091 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDA--GLMYWEMD 151 (331)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~l--g~~~~~~~ 151 (331)
.+....++.+++++.....+..+ .+..++..||.||.+ ..++..|..+|++....---.+.|.+ +..+++.+
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p--~~rAgLSlLgyCYY~----~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSP--RSRAGLSLLGYCYYR----LQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 34566777777766665555544 356677888888888 78888888888887776555555443 23333445
Q ss_pred CHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Q 020091 152 KKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAM 231 (331)
Q Consensus 152 ~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~ 231 (331)
.+..|+.......+... + -+...+..-+..|. .+|+..+..+.++-...|++...
T Consensus 93 i~ADALrV~~~~~D~~~-------------L-------~~~~lqLqaAIkYs-----e~Dl~g~rsLveQlp~en~Ad~~ 147 (459)
T KOG4340|consen 93 IYADALRVAFLLLDNPA-------------L-------HSRVLQLQAAIKYS-----EGDLPGSRSLVEQLPSENEADGQ 147 (459)
T ss_pred ccHHHHHHHHHhcCCHH-------------H-------HHHHHHHHHHHhcc-----cccCcchHHHHHhccCCCccchh
Confidence 55555444333221100 0 01112233344454 56788888888888777889999
Q ss_pred HHHHHHHhcCCCccccHHHHHHHHHHHHHc-C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 020091 232 YNTSLCYSFGEGLPLSHRQARKWMKRAADC-G-HGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 294 (331)
Q Consensus 232 ~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~-~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~ 294 (331)
.+.|-+.++ ..+++.|..-|..|.+- | .+...++++.+++..|+++.|+++....++.|
T Consensus 148 in~gCllyk----egqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 148 INLGCLLYK----EGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred ccchheeec----cccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 999988866 45999999999999876 3 46777899999999999999999988887654
No 164
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=7.5e-05 Score=67.49 Aligned_cols=210 Identities=18% Similarity=0.119 Sum_probs=145.1
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------Cc
Q 020091 107 WGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-----------QP 173 (331)
Q Consensus 107 LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~ 173 (331)
.|..+.. .++|..|+..|..|++.. ++..+.+-+.++...+++++|..-+++.+.+.+... ..
T Consensus 55 ~gn~~yk----~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 55 EGNAFYK----QKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLAL 130 (486)
T ss_pred hcchHHH----HhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhh
Confidence 3444555 789999999999999986 677788899999999999999999999998877766 23
Q ss_pred cCHHHHHHHHHH---------------HHHCCC-HHH----HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHH
Q 020091 174 ANAEEAVKLLYQ---------------ASIAGH-VRA----QYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAM 231 (331)
Q Consensus 174 ~~~~~A~~~~~~---------------a~~~~~-~~a----~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~ 231 (331)
.+..+|...|+- .+.... ..+ ...-+.|+.. .+++++|..---..+.. .+..+.
T Consensus 131 ~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~----~~~~~~a~~ea~~ilkld~~n~~al 206 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAF----LGDYDEAQSEAIDILKLDATNAEAL 206 (486)
T ss_pred HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhh----cccchhHHHHHHHHHhcccchhHHH
Confidence 333444433321 111111 122 2223344443 77888887766666554 567788
Q ss_pred HHHHHHHhcCCCccccHHHHHHHHHHHHHcCCH--------------HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCH-
Q 020091 232 YNTSLCYSFGEGLPLSHRQARKWMKRAADCGHG--------------KAQLEHGLGLFTEGEMMKAVVYLELATRAGET- 296 (331)
Q Consensus 232 ~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~--------------~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~- 296 (331)
+--|.++.. ..+.++|...|.+++..+.. ..+-.-|.-.++.|++.+|.+.|..|+.+++.
T Consensus 207 ~vrg~~~yy----~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n 282 (486)
T KOG0550|consen 207 YVRGLCLYY----NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN 282 (486)
T ss_pred Hhccccccc----ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc
Confidence 888888766 55999999999999988542 22344577778899999999999999998763
Q ss_pred ---HHHHHHHHHHhhhchhcHHHHHHHHHhhhcCC
Q 020091 297 ---AADHVKNVILQQLSATSRDRAMLVVDSWRAMP 328 (331)
Q Consensus 297 ---~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~ 328 (331)
.+....+........+..++|+.--...++..
T Consensus 283 ~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD 317 (486)
T KOG0550|consen 283 KKTNAKLYGNRALVNIRLGRLREAISDCNEALKID 317 (486)
T ss_pred cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC
Confidence 34445555555556666667766555554443
No 165
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.08 E-value=2e-05 Score=72.76 Aligned_cols=67 Identities=13% Similarity=0.030 Sum_probs=57.2
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHH---HHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 020091 97 PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STL---AMVDAGLMYWEMDKKEAAISLYRQAAVLG 167 (331)
Q Consensus 97 ~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~---a~~~lg~~~~~~~~~~~A~~~~~~a~~~~ 167 (331)
+..++.+++++|.+|+. .+++++|+..|++|++.+ +++ +++|+|.+|...|+.++|+..|++|+++.
T Consensus 71 dP~~a~a~~NLG~AL~~----lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFS----KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 35688899999999988 899999999999998875 554 48999999999999999999999998873
No 166
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=98.04 E-value=6.3e-06 Score=49.67 Aligned_cols=36 Identities=39% Similarity=0.673 Sum_probs=21.9
Q ss_pred HHHHHHHH--HHHhcCC-CCCCCHHHHHHHHHHHHHCCC
Q 020091 192 VRAQYQLA--LCLHRGR-GVDFNLQEAARWYLRAAEGGY 227 (331)
Q Consensus 192 ~~a~~~lg--~~y~~G~-g~~~d~~~A~~~~~~A~~~~~ 227 (331)
++|+++|| .+|..|. |+.+|.++|++||++|++.|+
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g~ 39 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQGH 39 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT-
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHccC
Confidence 35666666 5556666 566666666666666666553
No 167
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.02 E-value=3.4e-05 Score=54.31 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 265 KAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 265 ~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
.++.++|.++...|++++|+.+|++|++.
T Consensus 47 ~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 47 NTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45577888888888888888888888753
No 168
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=98.02 E-value=6.8e-06 Score=49.53 Aligned_cols=36 Identities=31% Similarity=0.493 Sum_probs=32.7
Q ss_pred HHHHHHHH--HHHhcCC-CCCCCHHHHHHHHHHHHhCCC
Q 020091 101 AMVLLRWG--KRFKHGR-GVRKNLDKALDSFLKGAARGS 136 (331)
Q Consensus 101 ~~a~~~LG--~~y~~g~-g~~~~~~~A~~~~~~A~~~~~ 136 (331)
|.+++.|| .+|..|. |+..|.++|+.||++|++.|+
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g~ 39 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQGH 39 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT-
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHccC
Confidence 57899999 8889999 899999999999999999885
No 169
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.02 E-value=3.2e-05 Score=71.39 Aligned_cols=71 Identities=20% Similarity=0.156 Sum_probs=62.8
Q ss_pred HhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHH---HHHHHHHHHhcCCCC
Q 020091 132 AARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVR---AQYQLALCLHRGRGV 208 (331)
Q Consensus 132 ~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---a~~~lg~~y~~G~g~ 208 (331)
++-+++.+++++|..|...|++++|+..|++|+++++ ++++ +++|+|.+|..
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P---------------------d~aeA~~A~yNLAcaya~---- 124 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNP---------------------NPDEAQAAYYNKACCHAY---- 124 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---------------------CchHHHHHHHHHHHHHHH----
Confidence 3446899999999999999999999999999999977 4664 49999999987
Q ss_pred CCCHHHHHHHHHHHHHCCC
Q 020091 209 DFNLQEAARWYLRAAEGGY 227 (331)
Q Consensus 209 ~~d~~~A~~~~~~A~~~~~ 227 (331)
.++.++|+.+|++|++.++
T Consensus 125 LGr~dEAla~LrrALelsn 143 (453)
T PLN03098 125 REEGKKAADCLRTALRDYN 143 (453)
T ss_pred cCCHHHHHHHHHHHHHhcc
Confidence 8899999999999999743
No 170
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.01 E-value=0.00057 Score=57.76 Aligned_cols=148 Identities=14% Similarity=0.086 Sum_probs=96.8
Q ss_pred hHHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-----CCHH
Q 020091 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLR-EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----GSTL 138 (331)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-----~~~~ 138 (331)
+......+...+..|++.+|...+..+....|... -+.+++.+|..|+. .+++++|+..|+.-+.. ..+.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~----~~~y~~A~~~~~~fi~~yP~~~~~~~ 80 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK----QGDYEEAIAAYERFIKLYPNSPKADY 80 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCCcchhh
Confidence 45678888889999999999999999999887654 45799999999999 89999999999998875 2457
Q ss_pred HHHHHHHHHhcC-----------CCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCC
Q 020091 139 AMVDAGLMYWEM-----------DKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRG 207 (331)
Q Consensus 139 a~~~lg~~~~~~-----------~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g 207 (331)
+++.+|.++... +...+|+..|+..+..-|... -..+|....... ....+.--+.+|..|..
T Consensus 81 A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~---y~~~A~~~l~~l-~~~la~~e~~ia~~Y~~--- 153 (203)
T PF13525_consen 81 ALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE---YAEEAKKRLAEL-RNRLAEHELYIARFYYK--- 153 (203)
T ss_dssp HHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST---THHHHHHHHHHH-HHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch---HHHHHHHHHHHH-HHHHHHHHHHHHHHHHH---
Confidence 899999987653 223466777777776655322 222222222111 11122333455666655
Q ss_pred CCCCHHHHHHHHHHHHH
Q 020091 208 VDFNLQEAARWYLRAAE 224 (331)
Q Consensus 208 ~~~d~~~A~~~~~~A~~ 224 (331)
.+.+.-|+..|+..++
T Consensus 154 -~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 154 -RGKYKAAIIRFQYVIE 169 (203)
T ss_dssp -TT-HHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHH
Confidence 5556666666666655
No 171
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.01 E-value=0.0032 Score=58.41 Aligned_cols=151 Identities=13% Similarity=-0.045 Sum_probs=121.7
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHH
Q 020091 134 RGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQ 213 (331)
Q Consensus 134 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~ 213 (331)
-+...++|..+..++..+.+++|+..++..+..-| +++..+-..+.++.. .++..
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P---------------------~N~~~~~~~~~i~~~----~nk~~ 357 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQP---------------------DNPYYLELAGDILLE----ANKAK 357 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHH----cCChH
Confidence 36777888888888888888888888888665544 788888899999987 78899
Q ss_pred HHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 020091 214 EAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLEL 289 (331)
Q Consensus 214 ~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~ 289 (331)
+|.+.+++++.. +......++|.+|..+. +..+|+..+...... .++..|..|+..|..+|+..+|...+..
T Consensus 358 ~A~e~~~kal~l~P~~~~l~~~~a~all~~g----~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 358 EAIERLKKALALDPNSPLLQLNLAQALLKGG----KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHhcC----ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 999999999886 45677889999998743 777999999998866 6789999999999999999999998877
Q ss_pred HHHc-C-CHHHHHHHHHHHhhhchhc
Q 020091 290 ATRA-G-ETAADHVKNVILQQLSATS 313 (331)
Q Consensus 290 A~~~-~-~~~a~~~l~~~~~~l~~~~ 313 (331)
.... | ...|...+.....++..+.
T Consensus 434 ~~~~~G~~~~A~~~l~~A~~~~~~~~ 459 (484)
T COG4783 434 GYALAGRLEQAIIFLMRASQQVKLGF 459 (484)
T ss_pred HHHhCCCHHHHHHHHHHHHHhccCCc
Confidence 7654 4 4556655555555554443
No 172
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.00018 Score=62.76 Aligned_cols=99 Identities=17% Similarity=0.101 Sum_probs=62.5
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcCCCCCC
Q 020091 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEM---DKKEAAISLYRQAAVLGDPAAQ 172 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~---~~~~~A~~~~~~a~~~~~~~~~ 172 (331)
.+|++.+..||.+|.. .+++..|...|.+|... .+++.+..+|.++... .+..++...|++++..++
T Consensus 153 P~d~egW~~Lg~~ym~----~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~---- 224 (287)
T COG4235 153 PGDAEGWDLLGRAYMA----LGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP---- 224 (287)
T ss_pred CCCchhHHHHHHHHHH----hcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC----
Confidence 4566677777777777 67777777777777665 2666666666555443 244455555555555544
Q ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 173 PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 173 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
.+..+.+.||..+.+ ++|+.+|+..++.-++.
T Consensus 225 -----------------~~iral~lLA~~afe----~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 225 -----------------ANIRALSLLAFAAFE----QGDYAEAAAAWQMLLDL 256 (287)
T ss_pred -----------------ccHHHHHHHHHHHHH----cccHHHHHHHHHHHHhc
Confidence 466677777776665 66677777777666654
No 173
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.0025 Score=54.80 Aligned_cols=122 Identities=9% Similarity=-0.031 Sum_probs=86.1
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHH
Q 020091 210 FNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYL 287 (331)
Q Consensus 210 ~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~ 287 (331)
...+-|..-+++..+.++...+..|+..|..--+....+..|..+|+.-.+. ..+......+.+++.++++++|...+
T Consensus 151 ~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL 230 (299)
T KOG3081|consen 151 HRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLL 230 (299)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHH
Confidence 3477888888888777666666667666643211122499999999998875 34667778899999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhchhcHHH-HHHHHHhhhcCCCCC
Q 020091 288 ELATRAGETAADHVKNVILQQLSATSRDR-AMLVVDSWRAMPSLH 331 (331)
Q Consensus 288 ~~A~~~~~~~a~~~l~~~~~~l~~~~~~~-a~~~~~~~~~~~~~~ 331 (331)
+.|++.++..+..+.+.+...+..|.-.+ ......+++..+|+|
T Consensus 231 ~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 231 EEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 99999876666666666654444443333 334456677777776
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.96 E-value=0.00028 Score=67.93 Aligned_cols=145 Identities=17% Similarity=0.015 Sum_probs=108.9
Q ss_pred HHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcC--------CCHHHHHHHH
Q 020091 91 WNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEM--------DKKEAAISLY 160 (331)
Q Consensus 91 ~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~--------~~~~~A~~~~ 160 (331)
.....+...++-.+|.-|.-|... +..++..+|+.+|++|++.. ++.++..|+.+|... .+..++....
T Consensus 329 ~~~~~~~~~~Ay~~~lrg~~~~~~-~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 329 LQQGLPHQGAALTLFYQAHHYLNS-GDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred HhccCCCCHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 345566667888899899877653 33677999999999999874 888888888877543 1345666667
Q ss_pred HHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHh
Q 020091 161 RQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-YVRAMYNTSLCYS 239 (331)
Q Consensus 161 ~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~-~~~a~~~lg~~y~ 239 (331)
+++..+... ..++.++.-+|.++.. .+++++|...|++|++.+ +..++..+|.++.
T Consensus 408 ~~a~al~~~-------------------~~~~~~~~ala~~~~~----~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~ 464 (517)
T PRK10153 408 DNIVALPEL-------------------NVLPRIYEILAVQALV----KGKTDEAYQAINKAIDLEMSWLNYVLLGKVYE 464 (517)
T ss_pred HHhhhcccC-------------------cCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 776664211 1367778888888764 688999999999998863 5678889999987
Q ss_pred cCCCccccHHHHHHHHHHHHHcCC
Q 020091 240 FGEGLPLSHRQARKWMKRAADCGH 263 (331)
Q Consensus 240 ~g~g~~~~~~~A~~~~~~a~~~~~ 263 (331)
. .++.++|..+|++|...+.
T Consensus 465 ~----~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 465 L----KGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred H----cCCHHHHHHHHHHHHhcCC
Confidence 6 4499999999999998844
No 175
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.00033 Score=63.44 Aligned_cols=142 Identities=17% Similarity=0.032 Sum_probs=100.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 020091 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAAR 217 (331)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~ 217 (331)
.-.-.-|+.|++.+++..|+.-|++|+..-+......+ ++.. .+..--..++.||+.||.. .+++.+|+.
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~-ee~~-----~~~~~k~~~~lNlA~c~lK----l~~~~~Ai~ 278 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDE-EEQK-----KAEALKLACHLNLAACYLK----LKEYKEAIE 278 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCH-HHHH-----HHHHHHHHHhhHHHHHHHh----hhhHHHHHH
Confidence 33456788999999999999999999865332211111 1111 1111123456799999986 788999999
Q ss_pred HHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHH-HHHHHHHHHHH
Q 020091 218 WYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMM-KAVVYLELATR 292 (331)
Q Consensus 218 ~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~-~A~~~~~~A~~ 292 (331)
+..++++. ++..|+|.-|.++.. ..+++.|+..|+++++. .+..+...|..+-.+..++. +....|.+...
T Consensus 279 ~c~kvLe~~~~N~KALyRrG~A~l~----~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 279 SCNKVLELDPNNVKALYRRGQALLA----LGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHh----hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999875 789999999999975 34999999999999877 56777778877665555443 33566766654
Q ss_pred c
Q 020091 293 A 293 (331)
Q Consensus 293 ~ 293 (331)
.
T Consensus 355 k 355 (397)
T KOG0543|consen 355 K 355 (397)
T ss_pred c
Confidence 3
No 176
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.00055 Score=59.64 Aligned_cols=105 Identities=16% Similarity=0.076 Sum_probs=62.4
Q ss_pred CCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC---------CccCHHHHHHHHHHH
Q 020091 118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA---------QPANAEEAVKLLYQA 186 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~---------~~~~~~~A~~~~~~a 186 (331)
.+.+..|........+.. .....-.-+-+.+..+|+-.+..+.++-...+.... ..++++.|+.-|+.|
T Consensus 91 A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaA 170 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAA 170 (459)
T ss_pred hcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHH
Confidence 355555555554443332 111111222333455666666666665543222222 678888888888888
Q ss_pred HHC-C-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC
Q 020091 187 SIA-G-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG 226 (331)
Q Consensus 187 ~~~-~-~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~ 226 (331)
.+- | .+...|+++.++.+ .+++..|+++....++.|
T Consensus 171 lqvsGyqpllAYniALaHy~----~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 171 LQVSGYQPLLAYNLALAHYS----SRQYASALKHISEIIERG 208 (459)
T ss_pred HhhcCCCchhHHHHHHHHHh----hhhHHHHHHHHHHHHHhh
Confidence 775 3 56677788888776 678888888888777754
No 177
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.85 E-value=0.0015 Score=58.39 Aligned_cols=214 Identities=14% Similarity=0.032 Sum_probs=134.5
Q ss_pred HHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHH-HHHHHHHHhcCCCCCCCHHHHHHHH----HHHHhCC----CH
Q 020091 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMV-LLRWGKRFKHGRGVRKNLDKALDSF----LKGAARG----ST 137 (331)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a-~~~LG~~y~~g~g~~~~~~~A~~~~----~~A~~~~----~~ 137 (331)
..+.....++...+..+++....+.+... .+... +..||.+-.-+ ...+.++++..+- .-+.+.. .-
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l---~~~~~Rf~~lG~l~~a~-s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ 83 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKL---SDLMGRFRVLGCLVTAH-SEMGRYKEMLKFAVSQIDTARELEDSDFLL 83 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHH---HHHHHHHHHhccchhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666778888888875544444443 33332 22233222111 0033344433221 1222333 33
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC----------------CccCHHHHHHHHHHHHHC----CCH----H
Q 020091 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA----------------QPANAEEAVKLLYQASIA----GHV----R 193 (331)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~----------------~~~~~~~A~~~~~~a~~~----~~~----~ 193 (331)
+++.+|+.-+...-++.+++.+-.-...+....+ ...-+++++++|++|.+- +++ .
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 5677888888777888888888776665532222 566788888888888653 333 3
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC------CCHH------HHHHHHHHHhcCCCccccHHHHHHHHHHHH--
Q 020091 194 AQYQLALCLHRGRGVDFNLQEAARWYLRAAEG------GYVR------AMYNTSLCYSFGEGLPLSHRQARKWMKRAA-- 259 (331)
Q Consensus 194 a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~------~~~~------a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~-- 259 (331)
.+..||.+|.. .+|+++|.-+..+|++. ++.. +++.++..|.. .| ....|.++.++|.
T Consensus 164 vcv~Lgslf~~----l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~-~G---~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 164 VCVSLGSLFAQ----LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRL-LG---RLGDAMECCEEAMKL 235 (518)
T ss_pred hhhhHHHHHHH----HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHH-hc---ccccHHHHHHHHHHH
Confidence 57788888876 89999999999999773 4444 45566666633 34 5566666666654
Q ss_pred --HcCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 020091 260 --DCGHG----KAQLEHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 260 --~~~~~----~a~~~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
..|+. ....-+|.||...||.+.|+.-|+.|..
T Consensus 236 al~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 236 ALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 44664 3345799999999999999999999875
No 178
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.83 E-value=0.00019 Score=66.20 Aligned_cols=100 Identities=15% Similarity=0.105 Sum_probs=65.8
Q ss_pred HHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCC--------CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh----
Q 020091 66 FDVLNKIAASFTLPQLRAASLVCKSWNDALRPLR--------EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA---- 133 (331)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~---- 133 (331)
...+-+..-.+-.|++..|........ .....| .-.++.+||.|+++ .+.+.-+..+|.+|..
T Consensus 241 ~~l~LKsq~eY~~gn~~kA~KlL~~sn-i~~~~g~~~T~q~~~cif~NNlGcIh~~----~~~y~~~~~~F~kAL~N~c~ 315 (696)
T KOG2471|consen 241 MALLLKSQLEYAHGNHPKAMKLLLVSN-IHKEAGGTITPQLSSCIFNNNLGCIHYQ----LGCYQASSVLFLKALRNSCS 315 (696)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhcc-cccccCccccchhhhheeecCcceEeee----hhhHHHHHHHHHHHHHHHHH
Confidence 344444444566788887754432111 111112 11245678888888 8888899999998874
Q ss_pred ---CC-------------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC
Q 020091 134 ---RG-------------STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPA 170 (331)
Q Consensus 134 ---~~-------------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~ 170 (331)
.| .-+..||+|..|...|++-.|.++|.+++..-...
T Consensus 316 qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n 368 (696)
T KOG2471|consen 316 QLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN 368 (696)
T ss_pred HHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC
Confidence 11 34577899999999999999999999987653333
No 179
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.82 E-value=0.013 Score=48.39 Aligned_cols=162 Identities=23% Similarity=0.206 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCH
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA----RGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANA 176 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~----~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 176 (331)
......++..+.. .+++..+...+..+.. ......+..+|..+...+++.+++..+.++.......
T Consensus 59 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 128 (291)
T COG0457 59 AGLLLLLALALLK----LGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP------ 128 (291)
T ss_pred hHHHHHHHHHHHH----cccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc------
Confidence 5677777888877 7888999888888874 3466777888888888888888888888888765432
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHH-HHhcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHhcCCCccccHHH
Q 020091 177 EEAVKLLYQASIAGHVRAQYQLAL-CLHRGRGVDFNLQEAARWYLRAAEGG-----YVRAMYNTSLCYSFGEGLPLSHRQ 250 (331)
Q Consensus 177 ~~A~~~~~~a~~~~~~~a~~~lg~-~y~~G~g~~~d~~~A~~~~~~A~~~~-----~~~a~~~lg~~y~~g~g~~~~~~~ 250 (331)
.......+. ++.. .+++++|..+|.++.... .......++..+.. ..+..+
T Consensus 129 ---------------~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 185 (291)
T COG0457 129 ---------------DLAEALLALGALYE----LGDYEEALELYEKALELDPELNELAEALLALGALLEA----LGRYEE 185 (291)
T ss_pred ---------------chHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH----hcCHHH
Confidence 111111111 3332 445555555555554421 11222222222211 225555
Q ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 020091 251 ARKWMKRAADCG---HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE 295 (331)
Q Consensus 251 A~~~~~~a~~~~---~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~ 295 (331)
|...+.++.... .......++..+...+++++|+..+..+....+
T Consensus 186 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 233 (291)
T COG0457 186 ALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDP 233 (291)
T ss_pred HHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc
Confidence 555555555441 134445555555555555555555555555443
No 180
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.82 E-value=0.0004 Score=59.97 Aligned_cols=49 Identities=12% Similarity=0.032 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 020091 118 RKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (331)
.+||..|..-|..-++.. .++|+|+||.+++..|+++.|...|..++..
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~ 207 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD 207 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh
Confidence 444555555555444431 3445555555555555555555555544443
No 181
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.81 E-value=0.00026 Score=63.11 Aligned_cols=159 Identities=16% Similarity=0.125 Sum_probs=117.4
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEA 179 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A 179 (331)
++......|.++.. .++++.|+..+.+. ++.++....-.+|...++++.|.+.++...+.++
T Consensus 101 ~~~~~~~~A~i~~~----~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~e----------- 162 (290)
T PF04733_consen 101 NEIVQLLAATILFH----EGDYEEALKLLHKG---GSLELLALAVQILLKMNRPDLAEKELKNMQQIDE----------- 162 (290)
T ss_dssp HHHHHHHHHHHHCC----CCHHHHHHCCCTTT---TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSC-----------
T ss_pred cHHHHHHHHHHHHH----cCCHHHHHHHHHcc---CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----------
Confidence 45566777788888 89999999999875 7889888888999999999999999988776643
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHh--c-CCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHH
Q 020091 180 VKLLYQASIAGHVRAQYQLALCLH--R-GRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKW 254 (331)
Q Consensus 180 ~~~~~~a~~~~~~~a~~~lg~~y~--~-G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 254 (331)
.....+|+..+. . | ...+.+|...|+...+. ..+..++.++.++.. .+++++|...
T Consensus 163 ------------D~~l~qLa~awv~l~~g---~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~----~~~~~eAe~~ 223 (290)
T PF04733_consen 163 ------------DSILTQLAEAWVNLATG---GEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ----LGHYEEAEEL 223 (290)
T ss_dssp ------------CHHHHHHHHHHHHHHHT---TTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH----CT-HHHHHHH
T ss_pred ------------cHHHHHHHHHHHHHHhC---chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH----hCCHHHHHHH
Confidence 223334443332 2 3 25689999999998776 456677888888865 4599999999
Q ss_pred HHHHHHc--CCHHHHHHHHHHHhccCCH-HHHHHHHHHHHHcCC
Q 020091 255 MKRAADC--GHGKAQLEHGLGLFTEGEM-MKAVVYLELATRAGE 295 (331)
Q Consensus 255 ~~~a~~~--~~~~a~~~Lg~~~~~~~~~-~~A~~~~~~A~~~~~ 295 (331)
+.+|... +++++..++..+....|+. +.+.+++.+.-...+
T Consensus 224 L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 224 LEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 9999766 5678889999988888877 556667776655443
No 182
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.74 E-value=0.00091 Score=51.19 Aligned_cols=96 Identities=24% Similarity=0.175 Sum_probs=65.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 020091 143 AGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRA 222 (331)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A 222 (331)
-|.++...|+.+.|++.|.+++.+.| ..+.+++|-+..|.- +++.++|+.-+++|
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P---------------------~raSayNNRAQa~RL----q~~~e~ALdDLn~A 103 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAP---------------------ERASAYNNRAQALRL----QGDDEEALDDLNKA 103 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcc---------------------cchHhhccHHHHHHH----cCChHHHHHHHHHH
Confidence 46677788899999999998888766 478899999999875 78899999999999
Q ss_pred HHC-CC-----HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHH
Q 020091 223 AEG-GY-----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQ 267 (331)
Q Consensus 223 ~~~-~~-----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~ 267 (331)
++. |+ -.++..-|.+|.. ..+.+.|..-|+.|++.|.+-+.
T Consensus 104 leLag~~trtacqa~vQRg~lyRl----~g~dd~AR~DFe~AA~LGS~FAr 150 (175)
T KOG4555|consen 104 LELAGDQTRTACQAFVQRGLLYRL----LGNDDAARADFEAAAQLGSKFAR 150 (175)
T ss_pred HHhcCccchHHHHHHHHHHHHHHH----hCchHHHHHhHHHHHHhCCHHHH
Confidence 875 22 1233444555532 22555555555555555554444
No 183
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.73 E-value=0.0099 Score=61.58 Aligned_cols=191 Identities=11% Similarity=0.005 Sum_probs=115.0
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCC-----CH-HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHH-HH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLR-----EA-MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTL-AM 140 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~-~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~-a~ 140 (331)
+++..+.+++.++.+.|..++.+.+....--. |. .|+.+|-..| |.-+.-.+.|++|+..-++. .+
T Consensus 1461 WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y-------G~eesl~kVFeRAcqycd~~~V~ 1533 (1710)
T KOG1070|consen 1461 WIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY-------GTEESLKKVFERACQYCDAYTVH 1533 (1710)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh-------CcHHHHHHHHHHHHHhcchHHHH
Confidence 34444444555555555555555544431100 00 1333333333 33444455555555544332 34
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 020091 141 VDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYL 220 (331)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~ 220 (331)
..|.-+|...+.+++|.++|+.-++.-- .....|..+|..+.. ..+-+.|...+.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~---------------------q~~~vW~~y~~fLl~----~ne~~aa~~lL~ 1588 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG---------------------QTRKVWIMYADFLLR----QNEAEAARELLK 1588 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc---------------------chhhHHHHHHHHHhc----ccHHHHHHHHHH
Confidence 4455555555555555555444433210 367788899998876 555688899999
Q ss_pred HHHHC----CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 020091 221 RAAEG----GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 294 (331)
Q Consensus 221 ~A~~~----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~ 294 (331)
+|+.. .+.......+.+-+. .| |.+.+...|+-.+... ..+.|.-+...-...|+.+.....|+|+++.+
T Consensus 1589 rAL~~lPk~eHv~~IskfAqLEFk-~G---DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1589 RALKSLPKQEHVEFISKFAQLEFK-YG---DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHhhcchhhhHHHHHHHHHHHhh-cC---CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 99864 566766677776644 33 8889999998877664 45666666666677889999999999999875
No 184
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.0012 Score=58.79 Aligned_cols=191 Identities=13% Similarity=0.028 Sum_probs=120.7
Q ss_pred HhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHhcC
Q 020091 73 AASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS--TLAMVDAGLMYWEM 150 (331)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~--~~a~~~lg~~~~~~ 150 (331)
-+.+...++..|......-. ..-+.........+|.||++ .+||++|..-|+-+.+..+ .+...+|+-|++-.
T Consensus 30 edfls~rDytGAislLefk~-~~~~EEE~~~~lWia~C~fh----LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyL 104 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKL-NLDREEEDSLQLWIAHCYFH----LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYL 104 (557)
T ss_pred HHHHhcccchhHHHHHHHhh-ccchhhhHHHHHHHHHHHHh----hccHHHHHHHHHHHhccCCCCcccchhHHHHHHHH
Confidence 34567888899965554322 22222344677889999999 9999999999998887764 45578999999988
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHH
Q 020091 151 DKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRA 230 (331)
Q Consensus 151 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a 230 (331)
|.+.+|...-.++.+..- ...-+++++.-+ +|- +-+--|...+.. ...-
T Consensus 105 g~Y~eA~~~~~ka~k~pL----------------------~~RLlfhlahkl-------ndE-k~~~~fh~~LqD-~~Ed 153 (557)
T KOG3785|consen 105 GQYIEAKSIAEKAPKTPL----------------------CIRLLFHLAHKL-------NDE-KRILTFHSSLQD-TLED 153 (557)
T ss_pred HHHHHHHHHHhhCCCChH----------------------HHHHHHHHHHHh-------CcH-HHHHHHHHHHhh-hHHH
Confidence 888888777666543210 123344444432 233 333334443332 2233
Q ss_pred HHHHHHHHhcCCCccccHHHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CC-HHHHHHHH
Q 020091 231 MYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKAQLEHGLGLFTEGEMMKAVVYLELATRA-GE-TAADHVKN 303 (331)
Q Consensus 231 ~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~-~~-~~a~~~l~ 303 (331)
+..|+-+.+. .-.+++|+..|++...-+ ....-..++.||++..-++-+...+..-+.. ++ ..|..+..
T Consensus 154 qLSLAsvhYm----R~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLka 226 (557)
T KOG3785|consen 154 QLSLASVHYM----RMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKA 226 (557)
T ss_pred HHhHHHHHHH----HHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHH
Confidence 3444444322 236889999999987653 2333457899999999999988888877765 33 44443333
No 185
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=0.0099 Score=53.20 Aligned_cols=136 Identities=10% Similarity=-0.029 Sum_probs=76.6
Q ss_pred ccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhcCCCH
Q 020091 75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMVDAGLMYWEMDKK 153 (331)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~~~~~~~~ 153 (331)
.+..|++++|...|.-... .+..+++...+|+.+++. .|.|.+|...-.+|.+.. ...-+++|+. +.+|-
T Consensus 67 ~fhLgdY~~Al~~Y~~~~~--~~~~~~el~vnLAcc~Fy----Lg~Y~eA~~~~~ka~k~pL~~RLlfhlah---klndE 137 (557)
T KOG3785|consen 67 YFHLGDYEEALNVYTFLMN--KDDAPAELGVNLACCKFY----LGQYIEAKSIAEKAPKTPLCIRLLFHLAH---KLNDE 137 (557)
T ss_pred HHhhccHHHHHHHHHHHhc--cCCCCcccchhHHHHHHH----HHHHHHHHHHHhhCCCChHHHHHHHHHHH---HhCcH
Confidence 5788999999988876665 445677888899999998 899999988877776543 2222334432 33443
Q ss_pred HHHHHHHHHHHHc----CCCCC----CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 020091 154 EAAISLYRQAAVL----GDPAA----QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAA 223 (331)
Q Consensus 154 ~~A~~~~~~a~~~----~~~~~----~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~ 223 (331)
++-.. |...+.. .-..+ ..-.|.+|+..|++.+.. +....-.+++.||.. ..-++-+.+.+.--+
T Consensus 138 k~~~~-fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyK----lDYydvsqevl~vYL 212 (557)
T KOG3785|consen 138 KRILT-FHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYK----LDYYDVSQEVLKVYL 212 (557)
T ss_pred HHHHH-HHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHh----cchhhhHHHHHHHHH
Confidence 33332 3222211 00000 345566666666665543 222233356666653 223444544444444
Q ss_pred H
Q 020091 224 E 224 (331)
Q Consensus 224 ~ 224 (331)
.
T Consensus 213 ~ 213 (557)
T KOG3785|consen 213 R 213 (557)
T ss_pred H
Confidence 4
No 186
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.71 E-value=0.00015 Score=50.22 Aligned_cols=59 Identities=10% Similarity=0.175 Sum_probs=52.4
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 107 WGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 107 LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
|..+|.+ .+++++|++++++++..+ ++..++..|.++...|++++|+..|+++++..+.
T Consensus 1 l~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 1 LKQIYLQ----QEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred CHHHHHh----CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 3567777 899999999999999885 8888999999999999999999999999988763
No 187
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.65 E-value=0.026 Score=54.27 Aligned_cols=211 Identities=15% Similarity=0.046 Sum_probs=137.4
Q ss_pred cCCchHHHhHHHHHHHHHHhCC---CC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC------CHHHHHHHHH
Q 020091 76 FTLPQLRAASLVCKSWNDALRP---LR-EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG------STLAMVDAGL 145 (331)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~---~~-~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~------~~~a~~~lg~ 145 (331)
+..|+..+-...|....+..-. .| -...+..+|.+|.. .++.+.|...|++|.... .+..+++-|.
T Consensus 358 l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~----~~~l~~aRvifeka~~V~y~~v~dLa~vw~~wae 433 (835)
T KOG2047|consen 358 LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYEN----NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAE 433 (835)
T ss_pred hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHh----cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHH
Confidence 4455555555555555554321 12 23467789999999 899999999999999874 3556788888
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCC-----------------------------CccCHHHHHHHHHHHHHC--CCHHH
Q 020091 146 MYWEMDKKEAAISLYRQAAVLGDPAA-----------------------------QPANAEEAVKLLYQASIA--GHVRA 194 (331)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~~~~~~-----------------------------~~~~~~~A~~~~~~a~~~--~~~~a 194 (331)
+-....+++.|+.+.++|........ .-+.++.....|.+.+++ --|..
T Consensus 434 mElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqi 513 (835)
T KOG2047|consen 434 MELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQI 513 (835)
T ss_pred HHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHH
Confidence 88888999999999999986643311 345555566667777765 46777
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-CCH---HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHH--
Q 020091 195 QYQLALCLHRGRGVDFNLQEAARWYLRAAEG-GYV---RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQL-- 268 (331)
Q Consensus 195 ~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~-~~~---~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~-- 268 (331)
..|.|+.+++ ..-+++|++.|++-+.. ..+ +.+...=..+....| ....+.|...|++|++.-.+...-
T Consensus 514 i~NyAmfLEe----h~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg-g~klEraRdLFEqaL~~Cpp~~aKti 588 (835)
T KOG2047|consen 514 IINYAMFLEE----HKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG-GTKLERARDLFEQALDGCPPEHAKTI 588 (835)
T ss_pred HHHHHHHHHh----hHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 7888888876 45688888888887765 221 112111011111111 237888889999998864444332
Q ss_pred --HHHHHHhccCCHHHHHHHHHHHHHcCC
Q 020091 269 --EHGLGLFTEGEMMKAVVYLELATRAGE 295 (331)
Q Consensus 269 --~Lg~~~~~~~~~~~A~~~~~~A~~~~~ 295 (331)
..+.+-..-|--..|+..|++|...-.
T Consensus 589 yLlYA~lEEe~GLar~amsiyerat~~v~ 617 (835)
T KOG2047|consen 589 YLLYAKLEEEHGLARHAMSIYERATSAVK 617 (835)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 234433445667777777877766543
No 188
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.0095 Score=50.68 Aligned_cols=176 Identities=20% Similarity=0.257 Sum_probs=108.5
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC---C-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----C
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---G-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL----G 167 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~---~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~ 167 (331)
-+..+..-+..|.. .+++++|...+.+|++. + -+.++-..|.+......+.|++.+|++|+.+ |
T Consensus 30 aas~yekAAvafRn----Ak~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 30 AASLYEKAAVAFRN----AKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred hHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 34555556677777 89999999999999843 1 1234455666666678888888888888754 4
Q ss_pred CCCC------------CccCHHHHHHHHHHHHHC---CC-H----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH---
Q 020091 168 DPAA------------QPANAEEAVKLLYQASIA---GH-V----RAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--- 224 (331)
Q Consensus 168 ~~~~------------~~~~~~~A~~~~~~a~~~---~~-~----~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~--- 224 (331)
.+.. ...++++|+.+|++++.. ++ . +-+..++++|.. .+.+++|...+.+-..
T Consensus 106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr----l~kf~Eaa~a~lKe~~~~~ 181 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR----LEKFTEAATAFLKEGVAAD 181 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh----hHHhhHHHHHHHHhhhHHH
Confidence 4443 567888899999887642 22 1 222334455544 4567777766665421
Q ss_pred -C---CC-HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC------HHHHHHHHHHHhccCCHHHHHHHHH
Q 020091 225 -G---GY-VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH------GKAQLEHGLGLFTEGEMMKAVVYLE 288 (331)
Q Consensus 225 -~---~~-~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~~~~~~~~~~A~~~~~ 288 (331)
. +. -.+...+-.+|.. ..|+..|..+|+...+.+. ..++-+|-. .++.||.++....+.
T Consensus 182 ~~~~y~~~~k~~va~ilv~L~----~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~-ayd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 182 KCDAYNSQCKAYVAAILVYLY----AHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT-AYDEGDIEEIKKVLS 251 (308)
T ss_pred HHhhcccHHHHHHHHHHHHhh----HHHHHHHHHHhcchhcCccccChHHHHHHHHHHH-HhccCCHHHHHHHHc
Confidence 1 11 1223333333333 4488888888888776532 334445433 466888877766554
No 189
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.61 E-value=0.06 Score=50.17 Aligned_cols=183 Identities=14% Similarity=0.015 Sum_probs=117.7
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC---------------------CccCHHHHHHHHHHHHHC-----
Q 020091 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA---------------------QPANAEEAVKLLYQASIA----- 189 (331)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------------~~~~~~~A~~~~~~a~~~----- 189 (331)
+-++++..-.+....|+.+.-.+.|++|+..-++.. ..+|.+.+...|+..++.
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkk 400 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKK 400 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCccc
Confidence 567777776777777899999999999988777654 678888888888887764
Q ss_pred -CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCH----HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC-
Q 020091 190 -GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYV----RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH- 263 (331)
Q Consensus 190 -~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~----~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~- 263 (331)
..+..+...+..-.+ +.|.+.|.+.+-.|+-.-.- ..+-.|-.- .++++.-...|++-++-++
T Consensus 401 FtFaKiWlmyA~feIR----q~~l~~ARkiLG~AIG~cPK~KlFk~YIelElq-------L~efDRcRkLYEkfle~~Pe 469 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIR----QLNLTGARKILGNAIGKCPKDKLFKGYIELELQ-------LREFDRCRKLYEKFLEFSPE 469 (677)
T ss_pred chHHHHHHHHHHHHHH----HcccHHHHHHHHHHhccCCchhHHHHHHHHHHH-------HhhHHHHHHHHHHHHhcChH
Confidence 234444444444433 55677777777776543111 111111111 2367777777777776643
Q ss_pred -HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCC
Q 020091 264 -GKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 329 (331)
Q Consensus 264 -~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~--~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~ 329 (331)
..++...|.+-...|+.+.|...|+.|+.... ..-..+-..+--..+.++.+++..++++++.+.+
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 44556667766778888888888888877642 2223344445556677777888888888776544
No 190
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.60 E-value=0.004 Score=57.74 Aligned_cols=107 Identities=15% Similarity=0.007 Sum_probs=82.2
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHH
Q 020091 175 NAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQAR 252 (331)
Q Consensus 175 ~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~ 252 (331)
.++.|+.++++..+. ++++...|+.++.. .++..+|++.+.+++.. .+...+...+..+.. .++++.|+
T Consensus 184 ~~~~ai~lle~L~~~-~pev~~~LA~v~l~----~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~----k~~~~lAL 254 (395)
T PF09295_consen 184 RYDEAIELLEKLRER-DPEVAVLLARVYLL----MNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS----KKKYELAL 254 (395)
T ss_pred cHHHHHHHHHHHHhc-CCcHHHHHHHHHHh----cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHH
Confidence 344444444443333 46677789998875 56789999999999975 456677777777766 44899999
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 020091 253 KWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELA 290 (331)
Q Consensus 253 ~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A 290 (331)
...++|+.. ..-..|+.|+.+|...|++++|+..+...
T Consensus 255 ~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 255 EIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999988 45678999999999999999999777643
No 191
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.60 E-value=0.0022 Score=49.20 Aligned_cols=99 Identities=19% Similarity=0.091 Sum_probs=81.9
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc-CC-----HHHHH
Q 020091 197 QLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-GH-----GKAQL 268 (331)
Q Consensus 197 ~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~-----~~a~~ 268 (331)
.-|.+..+ .++.+.|++.|.+|+.. ..+.+++|-+..|.- .++.++|+.-+.+|++. |. ..++.
T Consensus 48 l~~valaE----~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL----q~~~e~ALdDLn~AleLag~~trtacqa~v 119 (175)
T KOG4555|consen 48 LKAIALAE----AGDLDGALELFGQALCLAPERASAYNNRAQALRL----QGDDEEALDDLNKALELAGDQTRTACQAFV 119 (175)
T ss_pred HHHHHHHh----ccchHHHHHHHHHHHHhcccchHhhccHHHHHHH----cCChHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 34555555 57899999999999875 688999999999854 55999999999999987 33 24567
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 020091 269 EHGLGLFTEGEMMKAVVYLELATRAGETAADHVKN 303 (331)
Q Consensus 269 ~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~ 303 (331)
.-|.+|...|+.+.|..-|+.|++.|+.-|...+-
T Consensus 120 QRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr~QLV 154 (175)
T KOG4555|consen 120 QRGLLYRLLGNDDAARADFEAAAQLGSKFAREQLV 154 (175)
T ss_pred HHHHHHHHhCchHHHHHhHHHHHHhCCHHHHHHHH
Confidence 88999999999999999999999999987765543
No 192
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.56 E-value=0.0022 Score=59.43 Aligned_cols=110 Identities=13% Similarity=0.091 Sum_probs=82.2
Q ss_pred chHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHH
Q 020091 79 PQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAA 156 (331)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A 156 (331)
+.++.|..++.++.+. +++....|+.++.. .++..+|++.+.+++... +...+...+.++...++++.|
T Consensus 183 ~~~~~ai~lle~L~~~-----~pev~~~LA~v~l~----~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 183 QRYDEAIELLEKLRER-----DPEVAVLLARVYLL----MNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred ccHHHHHHHHHHHHhc-----CCcHHHHHHHHHHh----cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 5677776666665554 34455667777776 567778888888887653 666666777777777777777
Q ss_pred HHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 020091 157 ISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRA 222 (331)
Q Consensus 157 ~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A 222 (331)
+...++++...| .+-..|+.|+.+|.. .+|+++|+-.++..
T Consensus 254 L~iAk~av~lsP---------------------~~f~~W~~La~~Yi~----~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 254 LEIAKKAVELSP---------------------SEFETWYQLAECYIQ----LGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHhCc---------------------hhHHHHHHHHHHHHh----cCCHHHHHHHHhcC
Confidence 777777777765 588999999999997 89999999887754
No 193
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.53 E-value=0.00026 Score=48.18 Aligned_cols=51 Identities=16% Similarity=0.153 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 020091 118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGD 168 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~ 168 (331)
.+++++|+.+|++++.. +++++.+.||.+|...|++++|...+.++....+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 46777777777777665 3777777777777777777777777777776654
No 194
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.45 E-value=0.00093 Score=46.12 Aligned_cols=58 Identities=24% Similarity=0.188 Sum_probs=45.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 020091 144 GLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAA 223 (331)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~ 223 (331)
..+|...+++++|+.++++++..+| +++..++..|.+|.. .+++.+|++.|++++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p---------------------~~~~~~~~~a~~~~~----~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDP---------------------DDPELWLQRARCLFQ----LGRYEEALEDLERAL 56 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCc---------------------ccchhhHHHHHHHHH----hccHHHHHHHHHHHH
Confidence 4567777777777777777777765 478888888888876 778888888888887
Q ss_pred HCC
Q 020091 224 EGG 226 (331)
Q Consensus 224 ~~~ 226 (331)
+.+
T Consensus 57 ~~~ 59 (73)
T PF13371_consen 57 ELS 59 (73)
T ss_pred HHC
Confidence 753
No 195
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.40 E-value=0.054 Score=44.59 Aligned_cols=197 Identities=21% Similarity=0.135 Sum_probs=138.4
Q ss_pred HHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHH-H
Q 020091 70 NKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGL-M 146 (331)
Q Consensus 70 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~-~ 146 (331)
.........+.+..+...+...............++.+|.++.. .+++.+++..+.++.... ........+. +
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 64 LLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEA----LGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH----HhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 33344455667777765555444321234567788889999988 789999999999999854 3344555555 8
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-
Q 020091 147 YWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG- 225 (331)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~- 225 (331)
+...+++++|+..|.+++...+. ..........++..+.. .+++.+|+..+.++...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~ 197 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPE------------------LNELAEALLALGALLEA----LGRYEEALELLEKALKLN 197 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCC------------------ccchHHHHHHhhhHHHH----hcCHHHHHHHHHHHHhhC
Confidence 88999999999999999764321 00133344444444443 56788999999988775
Q ss_pred -C-CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCH
Q 020091 226 -G-YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVVYLELATRAGET 296 (331)
Q Consensus 226 -~-~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~ 296 (331)
. .......++..+.. ..++.+|...+..+..... ......++..+...++++++...+.++......
T Consensus 198 ~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 198 PDDDAEALLNLGLLYLK----LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cccchHHHHHhhHHHHH----cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 3 35778888888865 3378899999998887744 466777777777677799999999998887664
No 196
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.40 E-value=0.071 Score=45.92 Aligned_cols=101 Identities=18% Similarity=0.105 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCc
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQP 173 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 173 (331)
..+.-+|.=|.--.+ .||+++|+.+|+.....- ...+++.++..+++.+++++|+....+-+.+.+...
T Consensus 32 ~p~~~LY~~g~~~L~----~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~-- 105 (254)
T COG4105 32 LPASELYNEGLTELQ----KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP-- 105 (254)
T ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC--
Confidence 356667777777777 799999999998877652 467889999999999999999999988888765321
Q ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHH
Q 020091 174 ANAEEAVKLLYQASIAGHVRAQYQLALCLHRGR-GVDFNLQEAARWYLR 221 (331)
Q Consensus 174 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~-g~~~d~~~A~~~~~~ 221 (331)
+-..++|..|.++..+. .+.+|..-+...|..
T Consensus 106 ----------------n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~ 138 (254)
T COG4105 106 ----------------NADYAYYLKGLSYFFQIDDVTRDQSAARAAFAA 138 (254)
T ss_pred ----------------ChhHHHHHHHHHHhccCCccccCHHHHHHHHHH
Confidence 34567888888887765 345666655444443
No 197
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.39 E-value=0.02 Score=54.99 Aligned_cols=200 Identities=13% Similarity=0.069 Sum_probs=128.6
Q ss_pred CCCHHHHHHHHHHHHhC-------CCH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC---------------Ccc
Q 020091 118 RKNLDKALDSFLKGAAR-------GST-LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA---------------QPA 174 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~-------~~~-~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~ 174 (331)
.++..+-+.-|..|+.. |.+ .-+..+|.+|...|+.+.|...|++|....-+.. ..+
T Consensus 360 e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~ 439 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE 439 (835)
T ss_pred cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence 67899999999999865 433 4578999999999999999999999987755443 677
Q ss_pred CHHHHHHHHHHHHHC----------CC----------HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHH
Q 020091 175 NAEEAVKLLYQASIA----------GH----------VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMY 232 (331)
Q Consensus 175 ~~~~A~~~~~~a~~~----------~~----------~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~ 232 (331)
+++.|+.+.++|.-. |. ...+..++.+-+. .+-++.-...|.+.++. -.+..-.
T Consensus 440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs----~gtfestk~vYdriidLriaTPqii~ 515 (835)
T KOG2047|consen 440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES----LGTFESTKAVYDRIIDLRIATPQIII 515 (835)
T ss_pred hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHhcCCHHHHH
Confidence 888888888887532 11 1112222222221 23355556667777665 4555666
Q ss_pred HHHHHHhcCCCccccHHHHHHHHHHHHHcCCHH----HHH---HHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020091 233 NTSLCYSFGEGLPLSHRQARKWMKRAADCGHGK----AQL---EHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVI 305 (331)
Q Consensus 233 ~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~----a~~---~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~ 305 (331)
|.|..+.. -+-++++++.|++.+..-.+. .+. .-..--+.....+.|...|++|++.-++.....+-.+
T Consensus 516 NyAmfLEe----h~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLl 591 (835)
T KOG2047|consen 516 NYAMFLEE----HKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLL 591 (835)
T ss_pred HHHHHHHh----hHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 77777755 345678888888877763222 221 1111123344788888888888886666666655555
Q ss_pred Hhhhch--hcHHHHHHHHHhhh
Q 020091 306 LQQLSA--TSRDRAMLVVDSWR 325 (331)
Q Consensus 306 ~~~l~~--~~~~~a~~~~~~~~ 325 (331)
+.+++. |-...++.++++..
T Consensus 592 YA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 592 YAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 555533 34556666666654
No 198
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.37 E-value=0.00047 Score=42.67 Aligned_cols=43 Identities=23% Similarity=0.214 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 020091 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLAL 200 (331)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 200 (331)
|.+++.||..|...|++++|+.+|+++++..| +++.++..||.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P---------------------~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDP---------------------DDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc---------------------CCHHHHHHhhh
Confidence 46788999999999999999999999999877 58888888875
No 199
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.35 E-value=0.00059 Score=46.40 Aligned_cols=52 Identities=15% Similarity=0.110 Sum_probs=42.5
Q ss_pred ccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHH
Q 020091 246 LSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA 297 (331)
Q Consensus 246 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~ 297 (331)
+++++|+..|+++... ++.++.+.||.+|...|++++|...++++....+.+
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 4888899999988766 678888899999999999999999999888776553
No 200
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.34 E-value=0.1 Score=48.68 Aligned_cols=233 Identities=12% Similarity=-0.023 Sum_probs=120.5
Q ss_pred CchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhcCCCHHHH
Q 020091 78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMVDAGLMYWEMDKKEAA 156 (331)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~~~~~~~~~~A 156 (331)
.|+...|.+++.+|+.-.|+ -.++...=..-.+ .+..+.|...|++=+-.. ....+...+.+-.+.|+..-|
T Consensus 154 LgNi~gaRqiferW~~w~P~---eqaW~sfI~fElR----ykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEWEPD---EQAWLSFIKFELR----YKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred hcccHHHHHHHHHHHcCCCc---HHHHHHHHHHHHH----hhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHH
Confidence 47888898999999887665 2333222222222 355666666666654332 334444444444445555555
Q ss_pred HHHHHHHHHcCCCCC--------------CccCHHHHHHHHHHHHH----------------------------------
Q 020091 157 ISLYRQAAVLGDPAA--------------QPANAEEAVKLLYQASI---------------------------------- 188 (331)
Q Consensus 157 ~~~~~~a~~~~~~~~--------------~~~~~~~A~~~~~~a~~---------------------------------- 188 (331)
...|++|++.--... ..+.++.|..+|+-|++
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 566655554311111 23333333333333322
Q ss_pred ------------CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHH---------HHHHHHHHhcCCCcccc
Q 020091 189 ------------AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRA---------MYNTSLCYSFGEGLPLS 247 (331)
Q Consensus 189 ------------~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a---------~~~lg~~y~~g~g~~~~ 247 (331)
+-+-++++.+-.+-.. .+|.+.-.+.|++|+..-.+.. +..+-++++.-. ..+|
T Consensus 307 Rk~qYE~~v~~np~nYDsWfdylrL~e~----~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEl-e~ed 381 (677)
T KOG1915|consen 307 RKFQYEKEVSKNPYNYDSWFDYLRLEES----VGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEEL-EAED 381 (677)
T ss_pred hhhHHHHHHHhCCCCchHHHHHHHHHHh----cCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHH-Hhhh
Confidence 1234555554444443 4677788888888876533211 223333332211 2567
Q ss_pred HHHHHHHHHHHHHc-CC-----HHHHHHHHHHHhc---------------------------------cCCHHHHHHHHH
Q 020091 248 HRQARKWMKRAADC-GH-----GKAQLEHGLGLFT---------------------------------EGEMMKAVVYLE 288 (331)
Q Consensus 248 ~~~A~~~~~~a~~~-~~-----~~a~~~Lg~~~~~---------------------------------~~~~~~A~~~~~ 288 (331)
.+.+...|+.+++. .+ ...+...+..... .++++.....|+
T Consensus 382 ~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 382 VERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 77788888777664 11 1112222222222 446666677777
Q ss_pred HHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHH
Q 020091 289 LATRAGETAADHVKNVILQQLSATSRDRAMLVVD 322 (331)
Q Consensus 289 ~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~ 322 (331)
+-++.++.++..+..........++.+++..++.
T Consensus 462 kfle~~Pe~c~~W~kyaElE~~LgdtdRaRaife 495 (677)
T KOG1915|consen 462 KFLEFSPENCYAWSKYAELETSLGDTDRARAIFE 495 (677)
T ss_pred HHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 7777776666555555554444555555555554
No 201
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.33 E-value=0.065 Score=44.98 Aligned_cols=181 Identities=13% Similarity=0.034 Sum_probs=109.0
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC------
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA------ 171 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~------ 171 (331)
-+..++.-|.+|.+ .|=..-|..-|.++.... .|++...||..+...|+++.|.+.|....++++...
T Consensus 64 RA~l~fERGvlYDS----lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR 139 (297)
T COG4785 64 RAQLLFERGVLYDS----LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 139 (297)
T ss_pred HHHHHHHhcchhhh----hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc
Confidence 35556777777777 777778888888877664 788888888888888999999999988888877654
Q ss_pred -----CccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-C-CHHHHHHHHHHHhcCC
Q 020091 172 -----QPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-G-YVRAMYNTSLCYSFGE 242 (331)
Q Consensus 172 -----~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~-~-~~~a~~~lg~~y~~g~ 242 (331)
-.+.+.-|..-+.+--. +.+|- .-=.+|..- ..-|+.+|..-+.+-++. + ....++-.+.++ |.
T Consensus 140 gi~~YY~gR~~LAq~d~~~fYQ~D~~DPf---R~LWLYl~E--~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL--gk 212 (297)
T COG4785 140 GIALYYGGRYKLAQDDLLAFYQDDPNDPF---RSLWLYLNE--QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL--GK 212 (297)
T ss_pred ceeeeecCchHhhHHHHHHHHhcCCCChH---HHHHHHHHH--hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH--hh
Confidence 34445555444444322 23331 111233221 145677776555444333 2 222333333332 11
Q ss_pred CccccHHHHHHHHHHHHHc------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 020091 243 GLPLSHRQARKWMKRAADC------GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 294 (331)
Q Consensus 243 g~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~ 294 (331)
- ..+..++-...-+.. --.++++.||..+...|+.++|...|+.|+.++
T Consensus 213 i---S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 213 I---SEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred c---cHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 1 111111111111111 124678899999999999999999999998764
No 202
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.33 E-value=0.054 Score=44.40 Aligned_cols=152 Identities=12% Similarity=-0.026 Sum_probs=97.3
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHH
Q 020091 107 WGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQ 185 (331)
Q Consensus 107 LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~ 185 (331)
++....+ .-|++....-..+..+.- ...-.+.||....+.|++.||...|++++.---.
T Consensus 62 ~~~a~~q----~ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA---------------- 121 (251)
T COG4700 62 LLMALQQ----KLDPERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFA---------------- 121 (251)
T ss_pred HHHHHHH----hcChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccC----------------
Confidence 4444444 344544444333333322 3444567888888888888888888887754222
Q ss_pred HHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc
Q 020091 186 ASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 261 (331)
Q Consensus 186 a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 261 (331)
+++..+..++..... .+++..|...+++..+. ..++.+..+|..|.. .| .+.+|...|+.++..
T Consensus 122 ----~d~a~lLglA~Aqfa----~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa-~g---~~a~Aesafe~a~~~ 189 (251)
T COG4700 122 ----HDAAMLLGLAQAQFA----IQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAA-QG---KYADAESAFEVAISY 189 (251)
T ss_pred ----CCHHHHHHHHHHHHh----hccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHh-cC---CchhHHHHHHHHHHh
Confidence 456666666666654 56788888888777664 345667777888754 23 677777778887776
Q ss_pred -CCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 020091 262 -GHGKAQLEHGLGLFTEGEMMKAVVYLELA 290 (331)
Q Consensus 262 -~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A 290 (331)
..+.+....+..+.++|+..+|..-|...
T Consensus 190 ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 190 YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 45677777777777788777666555433
No 203
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.30 E-value=0.011 Score=46.26 Aligned_cols=84 Identities=19% Similarity=0.222 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC---C--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCc
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---G--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQP 173 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~---~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 173 (331)
..+..+|.-|.-... .+++..|++.|+..-.. | ...+.+.||..|+..+++++|+..+++-+.+.|...
T Consensus 8 ~~~~~ly~~a~~~l~----~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp-- 81 (142)
T PF13512_consen 8 KSPQELYQEAQEALQ----KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP-- 81 (142)
T ss_pred CCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC--
Confidence 356677778877777 78888888888877654 2 567888899999999999999998888888876422
Q ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Q 020091 174 ANAEEAVKLLYQASIAGHVRAQYQLALCLHR 204 (331)
Q Consensus 174 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~ 204 (331)
..+.|+|..|.++..
T Consensus 82 ----------------~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 82 ----------------NVDYAYYMRGLSYYE 96 (142)
T ss_pred ----------------CccHHHHHHHHHHHH
Confidence 345677778877654
No 204
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.29 E-value=0.0059 Score=47.85 Aligned_cols=84 Identities=12% Similarity=0.141 Sum_probs=71.3
Q ss_pred hHHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-----CHH
Q 020091 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLR-EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STL 138 (331)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~ 138 (331)
+.++...+...+..|++.+|...+..+...-|-.. -..+...||..|+. .+++++|+..+++=+++. -+.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~----~~~y~~A~a~~~rFirLhP~hp~vdY 85 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK----QGDYEEAIAAYDRFIRLHPTHPNVDY 85 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCCCccH
Confidence 66778889999999999999988888877776544 45789999999999 999999999999999874 456
Q ss_pred HHHHHHHHHhcCCC
Q 020091 139 AMVDAGLMYWEMDK 152 (331)
Q Consensus 139 a~~~lg~~~~~~~~ 152 (331)
+++..|.++....+
T Consensus 86 a~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 86 AYYMRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHHHHhh
Confidence 89999999887644
No 205
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.28 E-value=0.00068 Score=39.07 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
+.+++.+|.++...|++++|+.+|++++.+.+.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 456778888888888888888888888877653
No 206
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.26 E-value=0.0007 Score=39.15 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 020091 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGD 168 (331)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~ 168 (331)
+.+++++|.+|...+++++|+..|++++++++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 45778888888888888888888888888765
No 207
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.21 E-value=0.061 Score=44.09 Aligned_cols=128 Identities=16% Similarity=0.117 Sum_probs=99.6
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC----CHHH
Q 020091 194 AQYQLALCLHRGRGVDFNLQEAARWYLRAAEG---GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG----HGKA 266 (331)
Q Consensus 194 a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~---~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a 266 (331)
-.+.||....+ .+++.+|...|.+++.- +++..+..++...+. ..+...|...++...+-. .++.
T Consensus 91 nr~rLa~al~e----lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa----~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 91 NRYRLANALAE----LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA----IQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred HHHHHHHHHHH----hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh----hccHHHHHHHHHHHhhcCCccCCCCc
Confidence 35678888876 78999999999999874 788888888888765 458889999988887653 4688
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhhc--hhcHHHHHHHHHhhhcCCC
Q 020091 267 QLEHGLGLFTEGEMMKAVVYLELATRA-GETAADHVKNVILQQLS--ATSRDRAMLVVDSWRAMPS 329 (331)
Q Consensus 267 ~~~Lg~~~~~~~~~~~A~~~~~~A~~~-~~~~a~~~l~~~~~~l~--~~~~~~a~~~~~~~~~~~~ 329 (331)
+..+|..|...|.++.|...|+.++.. ....+...++.++.... ....++..++++.+++..|
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~ 228 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRP 228 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcch
Confidence 899999999999999999999999985 44555555666554443 4455566677787776655
No 208
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.066 Score=45.70 Aligned_cols=193 Identities=16% Similarity=0.092 Sum_probs=106.4
Q ss_pred CCCHHHHHHHHHHHHhC-------C-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHC
Q 020091 118 RKNLDKALDSFLKGAAR-------G-STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIA 189 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~-------~-~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~ 189 (331)
..|++-|...|.+|+.. . -.+++..-...|......--|.+.|++++-+-. ....+.+++.+|++|+..
T Consensus 24 kad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLak---e~~klsEvvdl~eKAs~l 100 (308)
T KOG1585|consen 24 KADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAK---ELSKLSEVVDLYEKASEL 100 (308)
T ss_pred CCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHH
Confidence 57788888877777621 0 011222222234334444444444444433211 456678888899998653
Q ss_pred ----CCHH----HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC---CC--HHHHH---HHHHHHhcCCCccccHHHHHH
Q 020091 190 ----GHVR----AQYQLALCLHRGRGVDFNLQEAARWYLRAAEG---GY--VRAMY---NTSLCYSFGEGLPLSHRQARK 253 (331)
Q Consensus 190 ----~~~~----a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~---~~--~~a~~---~lg~~y~~g~g~~~~~~~A~~ 253 (331)
|.++ +.-.-|.+.+ ..++++|+.+|++++.. ++ -.+.- ..+.+|.. .+.+++|..
T Consensus 101 Y~E~GspdtAAmaleKAak~le-----nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr----l~kf~Eaa~ 171 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKALE-----NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR----LEKFTEAAT 171 (308)
T ss_pred HHHhCCcchHHHHHHHHHHHhh-----cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh----hHHhhHHHH
Confidence 5433 3334555565 46799999999999753 22 22322 33334433 346666666
Q ss_pred HHHHHHHc-----CCH-HHHHHHHHH--HhccCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhhhchhcHHHHHHHHH
Q 020091 254 WMKRAADC-----GHG-KAQLEHGLG--LFTEGEMMKAVVYLELATRAG---ETAADHVKNVILQQLSATSRDRAMLVVD 322 (331)
Q Consensus 254 ~~~~a~~~-----~~~-~a~~~Lg~~--~~~~~~~~~A~~~~~~A~~~~---~~~a~~~l~~~~~~l~~~~~~~a~~~~~ 322 (331)
.+.+-... ... .....+|.+ |....|+..|...|+.-..++ .++-...+..++.-...+|.+++..+..
T Consensus 172 a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 172 AFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIEEIKKVLS 251 (308)
T ss_pred HHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHHHHHHHHc
Confidence 66653211 111 111234433 444669999999999877654 2344444555566667777777665543
No 209
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.09 E-value=0.0012 Score=38.15 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCH
Q 020091 264 GKAQLEHGLGLFTEGEMMKAVVYLELATRAGET 296 (331)
Q Consensus 264 ~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~ 296 (331)
+.+++++|.+|...|++++|+.+|++|++.++.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 357889999999999999999999999987653
No 210
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.08 E-value=0.0019 Score=52.45 Aligned_cols=96 Identities=11% Similarity=0.142 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhCC--CHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHH--HCCCHH
Q 020091 121 LDKALDSFLKGAARG--STLAMVDAGLMYWEM---DKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQAS--IAGHVR 193 (331)
Q Consensus 121 ~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~ 193 (331)
++.|++.++.....+ +++++++-|..+.+. ....++...++.|+ .=|++|+ +++..+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAi----------------sK~eeAL~I~P~~hd 70 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAI----------------SKFEEALKINPNKHD 70 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHH----------------HHHHHHHHH-TT-HH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHH----------------HHHHHHHhcCCchHH
Confidence 456777777665554 778888888777665 23234444444333 2244432 347899
Q ss_pred HHHHHHHHHhc-CCCCCCC-------HHHHHHHHHHHHHCCCHHHHHH
Q 020091 194 AQYQLALCLHR-GRGVDFN-------LQEAARWYLRAAEGGYVRAMYN 233 (331)
Q Consensus 194 a~~~lg~~y~~-G~g~~~d-------~~~A~~~~~~A~~~~~~~a~~~ 233 (331)
|+++||++|.. |. ...| +++|..+|++|.+.+.....|+
T Consensus 71 Alw~lGnA~ts~A~-l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ 117 (186)
T PF06552_consen 71 ALWCLGNAYTSLAF-LTPDTAEAEEYFEKATEYFQKAVDEDPNNELYR 117 (186)
T ss_dssp HHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred HHHHHHHHHHHHHh-hcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 99999999864 32 1223 4455555555555444433333
No 211
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.03 E-value=0.13 Score=43.23 Aligned_cols=164 Identities=15% Similarity=0.056 Sum_probs=111.3
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA----- 171 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~----- 171 (331)
.-|..+..||..+.. .+|++-|.+.|.-..+.+ .-.+..|-|..++-+|++.-|..-+.+--..++.+.
T Consensus 97 ~m~~vfNyLG~Yl~~----a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LW 172 (297)
T COG4785 97 DMPEVFNYLGIYLTQ----AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLW 172 (297)
T ss_pred CcHHHHHHHHHHHHh----cccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHH
Confidence 468889999999998 999999999999988875 677889999999999999999888777766655554
Q ss_pred -----CccCHHHHHHHHHHHHHCCC------HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--C-------CHHHH
Q 020091 172 -----QPANAEEAVKLLYQASIAGH------VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--G-------YVRAM 231 (331)
Q Consensus 172 -----~~~~~~~A~~~~~~a~~~~~------~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~-------~~~a~ 231 (331)
..-|+.+|..-+.+-++.-+ .-..+.||.+-. + ..++++.+- + -...+
T Consensus 173 LYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~---------e---~l~~~~~a~a~~n~~~Ae~LTEty 240 (297)
T COG4785 173 LYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE---------E---TLMERLKADATDNTSLAEHLTETY 240 (297)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH---------H---HHHHHHHhhccchHHHHHHHHHHH
Confidence 56677777665554433322 222233333221 1 122222111 1 25678
Q ss_pred HHHHHHHhcCCCccccHHHHHHHHHHHHHcC------CHHHHHHHHHHHhccCCHHH
Q 020091 232 YNTSLCYSFGEGLPLSHRQARKWMKRAADCG------HGKAQLEHGLGLFTEGEMMK 282 (331)
Q Consensus 232 ~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~~~~~~~~~~ 282 (331)
+.||..|.. .++..+|...|+.|+..+ +.-|.+.|+.+.-.+.+..+
T Consensus 241 FYL~K~~l~----~G~~~~A~~LfKLaiannVynfVE~RyA~~EL~~l~q~~~~l~~ 293 (297)
T COG4785 241 FYLGKYYLS----LGDLDEATALFKLAVANNVYNFVEHRYALLELSLLGQDQDDLAE 293 (297)
T ss_pred HHHHHHHhc----cccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccchhhh
Confidence 899999965 449999999999998753 23455666666555544444
No 212
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.02 E-value=0.0016 Score=37.40 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 020091 264 GKAQLEHGLGLFTEGEMMKAVVYLELATRAGE 295 (331)
Q Consensus 264 ~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~ 295 (331)
+.+++.+|.+++..|++++|+.+|+++++..+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 35788999999999999999999999988754
No 213
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.97 E-value=0.28 Score=45.14 Aligned_cols=171 Identities=12% Similarity=0.019 Sum_probs=101.9
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC------CCHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHcCCCC
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR------GSTLAMVDAGLMYWE---MDKKEAAISLYRQAAVLGDPA 170 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~------~~~~a~~~lg~~~~~---~~~~~~A~~~~~~a~~~~~~~ 170 (331)
.++...+|=..|.. .+||+.-+.+.+..-.. ..+...+..|..+-+ .|+.++|+..+..++....
T Consensus 140 s~div~~lllSyRd----iqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~-- 213 (374)
T PF13281_consen 140 SPDIVINLLLSYRD----IQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDE-- 213 (374)
T ss_pred ChhHHHHHHHHhhh----hhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccC--
Confidence 45566667677877 78888888888766544 255566677777766 4566666666655443322
Q ss_pred CCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC-----CCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHH-hcCCC
Q 020091 171 AQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRG-----RGVDFNLQEAARWYLRAAEGG-YVRAMYNTSLCY-SFGEG 243 (331)
Q Consensus 171 ~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G-----~g~~~d~~~A~~~~~~A~~~~-~~~a~~~lg~~y-~~g~g 243 (331)
..+++.+..+|.+|..- ..-....++|+.||+++-+.. +.-+=-|++.++ ..|..
T Consensus 214 ------------------~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~ 275 (374)
T PF13281_consen 214 ------------------NPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHD 275 (374)
T ss_pred ------------------CCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCc
Confidence 14789999999998641 112345889999999998763 222222344433 33432
Q ss_pred ccccHHHHHHHH----HHHHHcCC---HHHHH---HHHHHHhccCCHHHHHHHHHHHHHcCC
Q 020091 244 LPLSHRQARKWM----KRAADCGH---GKAQL---EHGLGLFTEGEMMKAVVYLELATRAGE 295 (331)
Q Consensus 244 ~~~~~~~A~~~~----~~a~~~~~---~~a~~---~Lg~~~~~~~~~~~A~~~~~~A~~~~~ 295 (331)
.. ...+....- ....+.|. ...+. .++.+..-.+|+++|..+++++....+
T Consensus 276 ~~-~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 276 FE-TSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred cc-chHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 22 222222222 11122222 22222 344445558999999999999998753
No 214
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.94 E-value=0.0021 Score=39.68 Aligned_cols=41 Identities=12% Similarity=0.064 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGL 145 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~ 145 (331)
|.+++.||..|.. .|++++|+.+|+++++. +++.++..||.
T Consensus 1 p~~~~~la~~~~~----~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRR----LGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4678899999999 99999999999999987 49999988875
No 215
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.86 E-value=0.071 Score=51.02 Aligned_cols=112 Identities=19% Similarity=0.111 Sum_probs=76.2
Q ss_pred ccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHhcCCCc
Q 020091 173 PANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG------YVRAMYNTSLCYSFGEGL 244 (331)
Q Consensus 173 ~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~------~~~a~~~lg~~y~~g~g~ 244 (331)
..+.+.|..++..... ++.+--.+.-|+++.. .+|.++|+++|+++++.. .....+.+++++..
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~----~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~---- 317 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL----KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF---- 317 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH----
Confidence 4556666666666555 3555666677777765 778888888888876531 23346677777755
Q ss_pred cccHHHHHHHHHHHHHcCCH-HHH--HHHHHHHhccCCH-------HHHHHHHHHHHH
Q 020091 245 PLSHRQARKWMKRAADCGHG-KAQ--LEHGLGLFTEGEM-------MKAVVYLELATR 292 (331)
Q Consensus 245 ~~~~~~A~~~~~~a~~~~~~-~a~--~~Lg~~~~~~~~~-------~~A~~~~~~A~~ 292 (331)
..++++|..+|.+..+...+ .+. |..|.|+...++. ++|..++.++-.
T Consensus 318 ~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 318 QHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 55888888888888877543 443 4567777777777 777777777654
No 216
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.84 E-value=0.0011 Score=38.50 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=22.2
Q ss_pred HHHHHhCC--CHHHHHHHHHHHhcCCCHHHHH
Q 020091 128 FLKGAARG--STLAMVDAGLMYWEMDKKEAAI 157 (331)
Q Consensus 128 ~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~ 157 (331)
|++|++.+ ++.++++||.+|...|+.++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 66777664 7777888888877777777775
No 217
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.80 E-value=0.25 Score=51.84 Aligned_cols=172 Identities=13% Similarity=0.037 Sum_probs=116.2
Q ss_pred CCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHH
Q 020091 118 RKNLDKALDSFLKGAAR----------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQAS 187 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~----------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~ 187 (331)
..+.++|.+..++|+.. +...|++||=++| |.-+.-.+.|++|+..
T Consensus 1471 lsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~kVFeRAcqy--------------------- 1526 (1710)
T KOG1070|consen 1471 LSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLKKVFERACQY--------------------- 1526 (1710)
T ss_pred hhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHHHHHHHHHHh---------------------
Confidence 67888999999988753 2334555555555 3344444555555544
Q ss_pred HCCCH-HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-C-CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc---
Q 020091 188 IAGHV-RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-G-YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--- 261 (331)
Q Consensus 188 ~~~~~-~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~-~-~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--- 261 (331)
.++ ..+..|.-+|.. ...+++|.++|++-++. + ....|...|..+.. ..+-+.|...+.+|+..
T Consensus 1527 --cd~~~V~~~L~~iy~k----~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~----~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1527 --CDAYTVHLKLLGIYEK----SEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR----QNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred --cchHHHHHHHHHHHHH----hhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc----ccHHHHHHHHHHHHHhhcch
Confidence 343 456678888886 56799999999999876 5 56678888887765 23557888888898765
Q ss_pred -CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHh
Q 020091 262 -GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDS 323 (331)
Q Consensus 262 -~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~ 323 (331)
.+.+..-..+.+-++.||-+.+...|+-.+...+..-..+...+-..+..++.+.+..+|++
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeR 1659 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFER 1659 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHH
Confidence 35566667788889999999999888877776655555555555555554444444444443
No 218
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.76 E-value=0.0025 Score=37.45 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 020091 139 AMVDAGLMYWEMDKKEAAISLYRQAAV 165 (331)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (331)
++.+||.+|...|++++|+.+|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888888888888888888654
No 219
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.71 E-value=0.0031 Score=37.07 Aligned_cols=27 Identities=30% Similarity=0.241 Sum_probs=23.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 020091 266 AQLEHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 266 a~~~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
++.+||.+|...|++++|+.+|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467899999999999999999999664
No 220
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.70 E-value=0.0017 Score=37.74 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=23.9
Q ss_pred HHHHHHc--CCHHHHHHHHHHHhccCCHHHHH
Q 020091 255 MKRAADC--GHGKAQLEHGLGLFTEGEMMKAV 284 (331)
Q Consensus 255 ~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~ 284 (331)
|++|++. +++.++++||.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 6677766 67888888888888888888875
No 221
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.58 E-value=0.18 Score=48.34 Aligned_cols=149 Identities=16% Similarity=0.090 Sum_probs=106.6
Q ss_pred CccCHHHHHHHHHHHHHCCCHH---H-----HHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhc
Q 020091 172 QPANAEEAVKLLYQASIAGHVR---A-----QYQLALCLHRGR-GVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSF 240 (331)
Q Consensus 172 ~~~~~~~A~~~~~~a~~~~~~~---a-----~~~lg~~y~~G~-g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~ 240 (331)
-.+|.+.++..+.++.+.++.. + .|+++....-|. +...+...|.+.+...... +..--.+.-|.++..
T Consensus 200 F~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~ 279 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL 279 (468)
T ss_pred cCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 5678888888888887754322 1 233333333332 1367888999999988773 566667788888854
Q ss_pred CCCccccHHHHHHHHHHHHHcCC------HHHHHHHHHHHhccCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhhhchhc
Q 020091 241 GEGLPLSHRQARKWMKRAADCGH------GKAQLEHGLGLFTEGEMMKAVVYLELATRAG-ETAADHVKNVILQQLSATS 313 (331)
Q Consensus 241 g~g~~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~-~~~a~~~l~~~~~~l~~~~ 313 (331)
.++.++|+.+|.++..... .-..+.+|+++.-+.++++|..++.+..+.. -..+.+.+-.....+..++
T Consensus 280 ----~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~ 355 (468)
T PF10300_consen 280 ----KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGR 355 (468)
T ss_pred ----hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcc
Confidence 5599999999999875322 2345789999999999999999999999864 4567777766666666666
Q ss_pred H-------HHHHHHHHhh
Q 020091 314 R-------DRAMLVVDSW 324 (331)
Q Consensus 314 ~-------~~a~~~~~~~ 324 (331)
. ++|.+.++++
T Consensus 356 ~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 356 EEEAKEHKKEAEELFRKV 373 (468)
T ss_pred chhhhhhHHHHHHHHHHH
Confidence 6 6676666664
No 222
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.55 E-value=0.031 Score=47.48 Aligned_cols=89 Identities=18% Similarity=0.259 Sum_probs=66.7
Q ss_pred CCCHHHHHHHHHHHHhC----C-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHH
Q 020091 118 RKNLDKALDSFLKGAAR----G-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASI 188 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~----~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~ 188 (331)
..++++|++-|..|+-. + .+..+..+|.+|...++.+....++++|+ ..|.+|.+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al----------------~~y~~a~~ 153 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKAL----------------EFYEEAYE 153 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH----------------HHHHHHHH
Confidence 77888999988888632 1 23456789999999999777777776654 45666654
Q ss_pred C--------CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC
Q 020091 189 A--------GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG 226 (331)
Q Consensus 189 ~--------~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~ 226 (331)
. +....+|.+|.++.+ .+++++|.+||.+.+..+
T Consensus 154 ~e~~~~~~~~~~~l~YLigeL~rr----lg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 154 NEDFPIEGMDEATLLYLIGELNRR----LGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred hCcCCCCCchHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHcCC
Confidence 3 224678889998887 788999999999998753
No 223
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.55 E-value=0.46 Score=41.24 Aligned_cols=127 Identities=10% Similarity=-0.015 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 020091 193 RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGL 272 (331)
Q Consensus 193 ~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~ 272 (331)
-....-|.+|.+ .+++++|.....+ .+..++...--.++.. ....+-|..-+++..+.++......|+.
T Consensus 109 i~~l~aa~i~~~----~~~~deAl~~~~~---~~~lE~~Al~VqI~lk----~~r~d~A~~~lk~mq~ided~tLtQLA~ 177 (299)
T KOG3081|consen 109 IDLLLAAIIYMH----DGDFDEALKALHL---GENLEAAALNVQILLK----MHRFDLAEKELKKMQQIDEDATLTQLAQ 177 (299)
T ss_pred HHHHHhhHHhhc----CCChHHHHHHHhc---cchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 344455567766 6889999988887 2333333222233333 3377888888888877776666666766
Q ss_pred HHhc----cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 273 GLFT----EGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 273 ~~~~----~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
.+.+ .+.+..|+-+|+.-.+.-++......+....++..++.++|..++++.+...+.
T Consensus 178 awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 178 AWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred HHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 6654 447999999999999987788888899999999999999999999998876553
No 224
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.42 E-value=0.0056 Score=35.15 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 020091 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGD 168 (331)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~ 168 (331)
.+++.+|.+|...|++++|+.+|++++++.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4566677777777777777777777766544
No 225
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.26 E-value=0.039 Score=44.91 Aligned_cols=51 Identities=10% Similarity=-0.062 Sum_probs=27.9
Q ss_pred HCCCHHHHHHHHHHHhcCCCCCC-------CHHHHHHHHHHHHH--CCCHHHHHHHHHHHh
Q 020091 188 IAGHVRAQYQLALCLHRGRGVDF-------NLQEAARWYLRAAE--GGYVRAMYNTSLCYS 239 (331)
Q Consensus 188 ~~~~~~a~~~lg~~y~~G~g~~~-------d~~~A~~~~~~A~~--~~~~~a~~~lg~~y~ 239 (331)
++.++++++++|..+.+-- ..+ -+++|+.=|+.|+. .+...++++||..|.
T Consensus 21 nP~DadnL~~WG~ALLELA-qfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~t 80 (186)
T PF06552_consen 21 NPLDADNLTNWGGALLELA-QFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYT 80 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHH-HHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHH-hccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 3468899999998876400 012 23344444444433 356677777777774
No 226
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.26 E-value=0.15 Score=43.39 Aligned_cols=87 Identities=11% Similarity=0.048 Sum_probs=59.1
Q ss_pred chHHHhHHHHHHHHHHhC--CC---CCHHHHHHHHHHHhcCCCCCCCHHH-------HHHHHHHHHhCC--------CHH
Q 020091 79 PQLRAASLVCKSWNDALR--PL---REAMVLLRWGKRFKHGRGVRKNLDK-------ALDSFLKGAARG--------STL 138 (331)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~--~~---~~~~a~~~LG~~y~~g~g~~~~~~~-------A~~~~~~A~~~~--------~~~ 138 (331)
-.+++|...|.-.+--+. .. .-+..+..++-+|.. .+|.+. |.++|++|.... ...
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~----~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRD----LGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc----cCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 355666655544333221 11 135677888888888 777554 555555555432 346
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 139 AMVDAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
.++.+|.+..+.|++++|+.||.+.+.....
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 7889999999999999999999999987654
No 227
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.17 E-value=0.0094 Score=34.18 Aligned_cols=31 Identities=23% Similarity=0.177 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 020091 265 KAQLEHGLGLFTEGEMMKAVVYLELATRAGE 295 (331)
Q Consensus 265 ~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~ 295 (331)
.+++.+|.+|...|++++|+.+|+++++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4678899999999999999999999987643
No 228
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.96 E-value=0.68 Score=37.63 Aligned_cols=138 Identities=18% Similarity=0.229 Sum_probs=87.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCC---C-HHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 020091 144 GLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAG---H-VRAQYQLALCLHRGRGVDFNLQEAARWY 219 (331)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~---~-~~a~~~lg~~y~~G~g~~~d~~~A~~~~ 219 (331)
|+-|+..+.-.++-..|..|+++. ..+..++|+.-|....+-| + ..+....|.+..+ .++...|+.+|
T Consensus 46 gy~yw~~s~as~sgd~flaAL~lA----~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~----kgdta~AV~aF 117 (221)
T COG4649 46 GYTYWQTSRASKSGDAFLAALKLA----QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQ----KGDTAAAVAAF 117 (221)
T ss_pred eeehhcccccccchHHHHHHHHHH----HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhh----cccHHHHHHHH
Confidence 344455555555555555555442 2344556666666655543 3 4678888888876 88999999999
Q ss_pred HHHHHC-CCH-----HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCH---HHHHHHHHHHhccCCHHHHHHHHHHH
Q 020091 220 LRAAEG-GYV-----RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHG---KAQLEHGLGLFTEGEMMKAVVYLELA 290 (331)
Q Consensus 220 ~~A~~~-~~~-----~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~---~a~~~Lg~~~~~~~~~~~A~~~~~~A 290 (331)
..+..- ..+ .+-..-++++. ..| .++.-..-.+....-+++ .+...||..-++.|++.+|.+||.+.
T Consensus 118 deia~dt~~P~~~rd~ARlraa~lLv-D~g---sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 118 DEIAADTSIPQIGRDLARLRAAYLLV-DNG---SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHhccCCCcchhhHHHHHHHHHHHh-ccc---cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 998653 222 23344444443 333 455444444443333443 45678999999999999999999998
Q ss_pred HHc
Q 020091 291 TRA 293 (331)
Q Consensus 291 ~~~ 293 (331)
++-
T Consensus 194 a~D 196 (221)
T COG4649 194 AND 196 (221)
T ss_pred Hcc
Confidence 763
No 229
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.91 E-value=0.011 Score=33.52 Aligned_cols=31 Identities=13% Similarity=0.187 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 020091 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGD 168 (331)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~ 168 (331)
+|++++|.++...|+.++|+..|++.++..|
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 4678888888888888888888888877654
No 230
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.87 E-value=1.7 Score=41.21 Aligned_cols=199 Identities=11% Similarity=0.053 Sum_probs=121.4
Q ss_pred CCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC---------------------
Q 020091 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--------------------- 135 (331)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--------------------- 135 (331)
+..+.+.-+...++.++..++ -+.|+..|+.-. .....+|.++|++|++.|
T Consensus 180 RERnp~aRIkaA~eALei~pd--CAdAYILLAEEe------A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~ 251 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPD--CADAYILLAEEE------ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWH 251 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhh--hhHHHhhccccc------ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhh
Confidence 445555555555777776554 567776665433 456789999999987541
Q ss_pred ------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCC
Q 020091 136 ------STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVD 209 (331)
Q Consensus 136 ------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~ 209 (331)
...+...||+|.++.|+.++|++.|+......+.. ++-...++|-.++.. .
T Consensus 252 ~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~-------------------~~l~IrenLie~LLe----l 308 (539)
T PF04184_consen 252 RRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL-------------------DNLNIRENLIEALLE----L 308 (539)
T ss_pred ccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc-------------------chhhHHHHHHHHHHh----c
Confidence 02344689999999999999999999888665431 355677888888876 7
Q ss_pred CCHHHHHHHHHHHHHC---CCHHHHHHHHHHHhcCC------------CccccHHHHHHHHHHHHHcCCHHHHHHHHH--
Q 020091 210 FNLQEAARWYLRAAEG---GYVRAMYNTSLCYSFGE------------GLPLSHRQARKWMKRAADCGHGKAQLEHGL-- 272 (331)
Q Consensus 210 ~d~~~A~~~~~~A~~~---~~~~a~~~lg~~y~~g~------------g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~-- 272 (331)
+.+.++...+.+--+. ..+.-+|.-+.+-.... |.......|.+.+++|.+.+.-...|-|+.
T Consensus 309 q~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~ 388 (539)
T PF04184_consen 309 QAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKS 388 (539)
T ss_pred CCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCC
Confidence 7788888888776432 23344444444332221 222334567888899988754333333221
Q ss_pred ------HHhccCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 020091 273 ------GLFTEGEMMKAVVYLELATRA--GETAADHVKNVILQ 307 (331)
Q Consensus 273 ------~~~~~~~~~~A~~~~~~A~~~--~~~~a~~~l~~~~~ 307 (331)
-+.+.|| .||+.|---.+.. .-+.|..++.-..+
T Consensus 389 LilPPehilkrGD-SEAiaYAf~hL~hWk~veGAL~lL~~twe 430 (539)
T PF04184_consen 389 LILPPEHILKRGD-SEAIAYAFFHLQHWKRVEGALNLLHCTWE 430 (539)
T ss_pred CCCChHHhcCCCc-HHHHHHHHHHHHHHhcCHhHHHHHHHHhc
Confidence 1233444 7777766555543 34555555554444
No 231
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.83 E-value=0.15 Score=49.82 Aligned_cols=133 Identities=14% Similarity=0.076 Sum_probs=87.5
Q ss_pred CCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcC------
Q 020091 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEM------ 150 (331)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~------ 150 (331)
+.-.+++| .++.+ +..|+..+..|+..... +-+++.|.+.|-+..+-.-....-.|+.++.+.
T Consensus 675 e~vgledA----~qfiE---dnPHprLWrllAe~Al~----Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei 743 (1189)
T KOG2041|consen 675 EAVGLEDA----IQFIE---DNPHPRLWRLLAEYALF----KLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEI 743 (1189)
T ss_pred HHhchHHH----HHHHh---cCCchHHHHHHHHHHHH----HHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhH
Confidence 33344555 44444 46789999999998888 788999999998887765555555666666443
Q ss_pred ----CCHHHHHHHHHHHHHcCCCCC---CccCHHHHHHHHHHH----HHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 020091 151 ----DKKEAAISLYRQAAVLGDPAA---QPANAEEAVKLLYQA----SIAGHVRAQYQLALCLHRGRGVDFNLQEAARWY 219 (331)
Q Consensus 151 ----~~~~~A~~~~~~a~~~~~~~~---~~~~~~~A~~~~~~a----~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~ 219 (331)
|++++|.+.|..+-..+-... ..+|+-..+.+++.. -+.+...|..++|..+.+ ...+.+|.+||
T Consensus 744 ~~~~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~----~~~We~A~~yY 819 (1189)
T KOG2041|consen 744 SAFYGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAE----MMEWEEAAKYY 819 (1189)
T ss_pred hhhhcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 899999999976533211100 233444444444431 122446788999998876 66799999999
Q ss_pred HHHHH
Q 020091 220 LRAAE 224 (331)
Q Consensus 220 ~~A~~ 224 (331)
.+.-.
T Consensus 820 ~~~~~ 824 (1189)
T KOG2041|consen 820 SYCGD 824 (1189)
T ss_pred Hhccc
Confidence 87643
No 232
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.81 E-value=2.2 Score=43.08 Aligned_cols=100 Identities=17% Similarity=0.041 Sum_probs=79.3
Q ss_pred ChHHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHH
Q 020091 64 LPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMV 141 (331)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~ 141 (331)
++...+..+...+..+++..|...+.+.+++.|+...+.++ -|....+ .+..++|..+++.-... .+-..+-
T Consensus 8 ~~err~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vL--kaLsl~r----~gk~~ea~~~Le~~~~~~~~D~~tLq 81 (932)
T KOG2053|consen 8 MSERRLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVL--KALSLFR----LGKGDEALKLLEALYGLKGTDDLTLQ 81 (932)
T ss_pred cHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHH--HHHHHHH----hcCchhHHHHHhhhccCCCCchHHHH
Confidence 35566778888899999999999999999998765444444 4566666 78889999777654433 3667778
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 142 DAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
.+-.+|...+..++|..+|++++...|.
T Consensus 82 ~l~~~y~d~~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 82 FLQNVYRDLGKLDEAVHLYERANQKYPS 109 (932)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence 8999999999999999999999988664
No 233
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.63 E-value=0.99 Score=39.24 Aligned_cols=141 Identities=11% Similarity=0.113 Sum_probs=99.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 020091 139 AMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARW 218 (331)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~ 218 (331)
.++.+..++.-.+++.-.+..|.+.++.+++ ..+.-...||.+-.+ .||.+.|..+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e--------------------~~p~L~s~Lgr~~MQ----~GD~k~a~~y 234 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPE--------------------QEPQLLSGLGRISMQ----IGDIKTAEKY 234 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCc--------------------ccHHHHHHHHHHHHh----cccHHHHHHH
Confidence 3445555555556666666666666665443 356777789998887 7899999999
Q ss_pred HHHHHH--------CCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC--HHHHHHHHHHHhccCCHHHHHHHHH
Q 020091 219 YLRAAE--------GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVVYLE 288 (331)
Q Consensus 219 ~~~A~~--------~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~~~~~~~A~~~~~ 288 (331)
|++.-+ ++......+.+.+|. | .+|+..|...|.+....++ +.+-++-+.|+...|+...|++..+
T Consensus 235 f~~vek~~~kL~~~q~~~~V~~n~a~i~l-g---~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e 310 (366)
T KOG2796|consen 235 FQDVEKVTQKLDGLQGKIMVLMNSAFLHL-G---QNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLE 310 (366)
T ss_pred HHHHHHHHhhhhccchhHHHHhhhhhhee-c---ccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHH
Confidence 996532 133444556666663 2 5699999999999988855 5566788999999999999999999
Q ss_pred HHHHcCCHH-----HHHHHHHHHh
Q 020091 289 LATRAGETA-----ADHVKNVILQ 307 (331)
Q Consensus 289 ~A~~~~~~~-----a~~~l~~~~~ 307 (331)
.+.+..+.. -.+|+-.+++
T Consensus 311 ~~~~~~P~~~l~es~~~nL~tmyE 334 (366)
T KOG2796|consen 311 AMVQQDPRHYLHESVLFNLTTMYE 334 (366)
T ss_pred HHhccCCccchhhhHHHHHHHHHH
Confidence 999886533 3444555553
No 234
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.52 E-value=1.6 Score=38.64 Aligned_cols=154 Identities=11% Similarity=0.002 Sum_probs=82.5
Q ss_pred CCCHHHHHHHHHHHHhC---CCHH-------HHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHH
Q 020091 118 RKNLDKALDSFLKGAAR---GSTL-------AMVDAGLMYWEMD-KKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQA 186 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~---~~~~-------a~~~lg~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a 186 (331)
.+|.+.|..+|.|+-.. .+|. .+|+.|.-....+ ++++|+.|+++|.+.- .+.
T Consensus 6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l----------------~~~ 69 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDIL----------------EKP 69 (278)
T ss_pred hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH----------------Hhh
Confidence 57888888888887653 2443 4556666666667 7777777777776541 110
Q ss_pred H--HCC-------CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHhcCCCccccHHHHHHHHH
Q 020091 187 S--IAG-------HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE-GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMK 256 (331)
Q Consensus 187 ~--~~~-------~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~-~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 256 (331)
. +.. ....+..|+.+|.. .+.....++|....+.+-. .++....+.|..-...+ ..+.+.+.+.+.
T Consensus 70 ~~~~~~~~~~~elr~~iL~~La~~~l~-~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~---~~~~~~~~~~L~ 145 (278)
T PF08631_consen 70 GKMDKLSPDGSELRLSILRLLANAYLE-WDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLK---SFDEEEYEEILM 145 (278)
T ss_pred hhccccCCcHHHHHHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhc---cCChhHHHHHHH
Confidence 0 011 12345566666654 2234456666666666633 25555555555555443 336666666666
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHH
Q 020091 257 RAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVK 302 (331)
Q Consensus 257 ~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l 302 (331)
+.+..-+ ....+++.++..+....+..+..+..-+
T Consensus 146 ~mi~~~~-----------~~e~~~~~~l~~i~~l~~~~~~~a~~~l 180 (278)
T PF08631_consen 146 RMIRSVD-----------HSESNFDSILHHIKQLAEKSPELAAFCL 180 (278)
T ss_pred HHHHhcc-----------cccchHHHHHHHHHHHHhhCcHHHHHHH
Confidence 6655421 1123344444555555555444444433
No 235
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.041 Score=46.75 Aligned_cols=82 Identities=22% Similarity=0.218 Sum_probs=68.3
Q ss_pred CCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHH
Q 020091 118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQ 195 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~ 195 (331)
.+.+..|+..|.+|+..+ .+.-+.+-+.||.+.++++....-.++|+++.+ +.+.+.
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~---------------------N~vk~h 81 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDP---------------------NLVKAH 81 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh---------------------HHHHHH
Confidence 788999999999999887 334456888999998888888888888888765 578899
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 196 YQLALCLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 196 ~~lg~~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
|.||.+... ...+++|+..+.+|..
T Consensus 82 ~flg~~~l~----s~~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 82 YFLGQWLLQ----SKGYDEAIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHh----hccccHHHHHHHHHHH
Confidence 999998876 6779999999999954
No 236
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.43 E-value=0.35 Score=41.95 Aligned_cols=132 Identities=13% Similarity=0.042 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc-------
Q 020091 192 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC------- 261 (331)
Q Consensus 192 ~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~------- 261 (331)
...+|.+..++.- .+.|.-....+.+.++.+ ++.-...||.+-.+ .+|.+.|..+|++.-..
T Consensus 177 ~~Vmy~~~~~llG----~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ----~GD~k~a~~yf~~vek~~~kL~~~ 248 (366)
T KOG2796|consen 177 GRVMYSMANCLLG----MKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQ----IGDIKTAEKYFQDVEKVTQKLDGL 248 (366)
T ss_pred HHHHHHHHHHHhc----chhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHhhhhcc
Confidence 3456666666653 677889999999998864 45667788888755 34999999999955322
Q ss_pred -CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCCC
Q 020091 262 -GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 331 (331)
Q Consensus 262 -~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~~ 331 (331)
+......+.+.+|.-..|+.+|...|.+.++.++.++.++-...+..+=.++...|....+..+...|.|
T Consensus 249 q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 249 QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred chhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 2334556778888889999999999999999999888888888888888999999999999998888865
No 237
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.41 E-value=1.6 Score=37.80 Aligned_cols=152 Identities=12% Similarity=0.041 Sum_probs=96.3
Q ss_pred CCChHHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-----C
Q 020091 62 ASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLR-EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----G 135 (331)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-----~ 135 (331)
+..+..+..++...++.|++.+|...+......-+-.. -..++..|+..+.. .++++.|+.+..+=+.. +
T Consensus 31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk----~~~y~~A~~~~drFi~lyP~~~n 106 (254)
T COG4105 31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK----NGEYDLALAYIDRFIRLYPTHPN 106 (254)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCCCCCC
Confidence 34466778899999999999999887777766655332 35789999999999 89999999999998876 2
Q ss_pred CHHHHHHHHHHHhcC-----CCH---HHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCC
Q 020091 136 STLAMVDAGLMYWEM-----DKK---EAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRG 207 (331)
Q Consensus 136 ~~~a~~~lg~~~~~~-----~~~---~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g 207 (331)
-..+++..|..+... .|. .+|+.-|...+..-|...-..|-+.-+..+...+ +.--..+|..|..
T Consensus 107 ~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~L----A~~Em~IaryY~k--- 179 (254)
T COG4105 107 ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDAL----AGHEMAIARYYLK--- 179 (254)
T ss_pred hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHH----HHHHHHHHHHHHH---
Confidence 445788888888775 333 3455555555555443222222222222221111 1111245556654
Q ss_pred CCCCHHHHHHHHHHHHHC
Q 020091 208 VDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 208 ~~~d~~~A~~~~~~A~~~ 225 (331)
.+.+.-|+..++..++.
T Consensus 180 -r~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 180 -RGAYVAAINRFEEVLEN 196 (254)
T ss_pred -hcChHHHHHHHHHHHhc
Confidence 45566666666666653
No 238
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.41 E-value=0.025 Score=31.97 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 020091 265 KAQLEHGLGLFTEGEMMKAVVYLELATRAG 294 (331)
Q Consensus 265 ~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~ 294 (331)
++++++|.++...|++++|+..|++.++.-
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 467888888888888888888888887643
No 239
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.31 E-value=0.35 Score=42.95 Aligned_cols=115 Identities=15% Similarity=0.050 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHCCC--HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHH
Q 020091 212 LQEAARWYLRAAEGGY--VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYL 287 (331)
Q Consensus 212 ~~~A~~~~~~A~~~~~--~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~ 287 (331)
.+.|...|.+|.+.+. ...+...+.+-.+- .+|...|...|++++.. .+.+.+......+...++.+.|...|
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~---~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lf 93 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYC---NKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALF 93 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT---CS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 6667777777765432 34455555552221 22566677777777665 34455555555566667777777777
Q ss_pred HHHHHc-CCHH-H-HHHHHHHHhhhchhcHHHHHHHHHhhhcCCC
Q 020091 288 ELATRA-GETA-A-DHVKNVILQQLSATSRDRAMLVVDSWRAMPS 329 (331)
Q Consensus 288 ~~A~~~-~~~~-a-~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~ 329 (331)
++++.. .... + ..+-..+.-...-|+++.+..+.++..+..|
T Consensus 94 er~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 94 ERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp HHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 777654 2222 1 1122222233334455555555555544433
No 240
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.20 E-value=0.51 Score=39.28 Aligned_cols=92 Identities=15% Similarity=0.101 Sum_probs=67.3
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHhCC-------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHH
Q 020091 107 WGKRFKHGRGVRKNLDKALDSFLKGAARG-------STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEA 179 (331)
Q Consensus 107 LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A 179 (331)
=|.-++. .++|++|..-|..|++.= ....+.|-|.++.+.+..+.|+.-+.+|+++++.
T Consensus 101 EGN~~F~----ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt---------- 166 (271)
T KOG4234|consen 101 EGNELFK----NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT---------- 166 (271)
T ss_pred HHHHhhh----cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch----------
Confidence 3555555 789999999999988762 2334557777777778888888888888888763
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC
Q 020091 180 VKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY 227 (331)
Q Consensus 180 ~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~ 227 (331)
+-.|...-+.+|.. ...+++|++-|++..+.+.
T Consensus 167 -----------y~kAl~RRAeayek----~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 167 -----------YEKALERRAEAYEK----MEKYEEALEDYKKILESDP 199 (271)
T ss_pred -----------hHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHhCc
Confidence 45555667777776 5668888888888877644
No 241
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.19 E-value=2.5 Score=38.86 Aligned_cols=237 Identities=16% Similarity=0.061 Sum_probs=143.7
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHH--hcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHH
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRF--KHGRGVRKNLDKALDSFLKGAARG--STLAMVDAG 144 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y--~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg 144 (331)
+-.+...+-.|+++.|. +-++...+.....-+-.-|.+. .. .|+.+.|++|-+.|+..- .+-+...+=
T Consensus 124 lLeAQaal~eG~~~~Ar----~kfeAMl~dPEtRllGLRgLyleAqr----~GareaAr~yAe~Aa~~Ap~l~WA~~AtL 195 (531)
T COG3898 124 LLEAQAALLEGDYEDAR----KKFEAMLDDPETRLLGLRGLYLEAQR----LGAREAARHYAERAAEKAPQLPWAARATL 195 (531)
T ss_pred HHHHHHHHhcCchHHHH----HHHHHHhcChHHHHHhHHHHHHHHHh----cccHHHHHHHHHHHHhhccCCchHHHHHH
Confidence 44444556778888884 4444443322222111112222 23 688999999999988775 333333222
Q ss_pred HHHhcCCCHHHHHHHHHHHHHc---CCCCC---------------CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhc
Q 020091 145 LMYWEMDKKEAAISLYRQAAVL---GDPAA---------------QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHR 204 (331)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~---~~~~~---------------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~ 204 (331)
......||-+.|+++....... ....+ ...|...|...-.++.++ +...+...-+..+..
T Consensus 196 e~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~ 275 (531)
T COG3898 196 EARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFR 275 (531)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHh
Confidence 3334568888888888765432 11111 455666666666666654 566676677777765
Q ss_pred CCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHH-----HcCCHHHHHHHHHHHhccC
Q 020091 205 GRGVDFNLQEAARWYLRAAEGG-YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAA-----DCGHGKAQLEHGLGLFTEG 278 (331)
Q Consensus 205 G~g~~~d~~~A~~~~~~A~~~~-~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~-----~~~~~~a~~~Lg~~~~~~~ 278 (331)
.++..++-..++.+-+.. ++. ++.+|.... .-+.++.-++++. ..++.++.+.++..-..-|
T Consensus 276 ----d~~~rKg~~ilE~aWK~ePHP~----ia~lY~~ar----~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~ 343 (531)
T COG3898 276 ----DGNLRKGSKILETAWKAEPHPD----IALLYVRAR----SGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAG 343 (531)
T ss_pred ----ccchhhhhhHHHHHHhcCCChH----HHHHHHHhc----CCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhcc
Confidence 677888888888887653 232 333343321 2233444444443 2367888888888889999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhh
Q 020091 279 EMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWR 325 (331)
Q Consensus 279 ~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~ 325 (331)
++..|..--+.+++..+-...+.|-.=.+.-+.+|.-++..++-+-.
T Consensus 344 e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 344 EFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred chHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 99999999999998887666665444444455566666666655543
No 242
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.13 E-value=1.8 Score=39.99 Aligned_cols=171 Identities=11% Similarity=0.051 Sum_probs=87.9
Q ss_pred CchHHHhHHHHHHHHHHhCCC---CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHhcCC
Q 020091 78 LPQLRAASLVCKSWNDALRPL---REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---GSTLAMVDAGLMYWEMD 151 (331)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~---~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~---~~~~a~~~lg~~~~~~~ 151 (331)
-.+++..+.+. +-++..+.. ..+...+.+|..+-+. .-.||.++|...+..++.. .+++.+..+|.+|...
T Consensus 154 iqdydamI~Lv-e~l~~~p~~~~~~~~~i~~~yafALnRr-n~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~- 230 (374)
T PF13281_consen 154 IQDYDAMIKLV-ETLEALPTCDVANQHNIKFQYAFALNRR-NKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDL- 230 (374)
T ss_pred hhhHHHHHHHH-HHhhccCccchhcchHHHHHHHHHHhhc-ccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH-
Confidence 35555554443 333333221 1444556666666553 2278999999999996543 3899999999999653
Q ss_pred CHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCC-CHHHHHHHHHHHh-cCCCCCCCHHHHHHHH----HHHHHC
Q 020091 152 KKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAG-HVRAQYQLALCLH-RGRGVDFNLQEAARWY----LRAAEG 225 (331)
Q Consensus 152 ~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~-~G~g~~~d~~~A~~~~----~~A~~~ 225 (331)
|..+ +. ......++|+.||.++-+.. +...=.|++.++. .|.. ..+-.+..+.- ....+.
T Consensus 231 --------~~~s---~~--~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~-~~~~~el~~i~~~l~~llg~k 296 (374)
T PF13281_consen 231 --------FLES---NF--TDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHD-FETSEELRKIGVKLSSLLGRK 296 (374)
T ss_pred --------HHHc---Cc--cchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCc-ccchHHHHHHHHHHHHHHHhh
Confidence 1110 00 01222566666666665442 2233335555443 3321 11122222222 111122
Q ss_pred C---CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHH
Q 020091 226 G---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQ 267 (331)
Q Consensus 226 ~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~ 267 (331)
| ...-++..|..+.-.. ..+|+++|..+++++.... +.+|
T Consensus 297 g~~~~~~dYWd~ATl~Ea~v-L~~d~~ka~~a~e~~~~l~-~~~W 339 (374)
T PF13281_consen 297 GSLEKMQDYWDVATLLEASV-LAGDYEKAIQAAEKAFKLK-PPAW 339 (374)
T ss_pred ccccccccHHHHHHHHHHHH-HcCCHHHHHHHHHHHhhcC-Ccch
Confidence 2 2223333333332211 2459999999999998874 4444
No 243
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.12 E-value=0.045 Score=32.71 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 020091 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (331)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (331)
..++.+||.+|...|++++|+.++++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 356788888888888888888888888754
No 244
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.93 E-value=0.058 Score=32.21 Aligned_cols=29 Identities=21% Similarity=0.092 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 265 KAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 265 ~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
.++.+||.+|...|++++|..+++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 56789999999999999999999999864
No 245
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.90 E-value=0.9 Score=41.37 Aligned_cols=62 Identities=18% Similarity=0.222 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG------STLAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (331)
.+..+..++.+... .|.++.|...+.++...+ .+...+.-+.+++..|+..+|+..++..+.
T Consensus 145 ~~~~~l~~a~~aRk----~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARK----AGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHH----CCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44566777777777 788888888888888765 777888888888888888888888887776
No 246
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.72 E-value=0.048 Score=29.69 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 020091 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGD 168 (331)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~ 168 (331)
.+++.+|.++...+++++|+.+|++++...+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3566777777777777777777777776543
No 247
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=0.11 Score=44.13 Aligned_cols=91 Identities=18% Similarity=0.082 Sum_probs=65.5
Q ss_pred HHHcCCCCCCccCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q 020091 163 AAVLGDPAAQPANAEEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCY 238 (331)
Q Consensus 163 a~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y 238 (331)
.-+.|+.....+.|..|+..|.+|+..+ .+.=+.|-+.+|.. .++++....-.++|++. +...+.+.||.+.
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk----~~~~~~v~~dcrralql~~N~vk~h~flg~~~ 88 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLK----LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL 88 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH----hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 3334444445555555666666555432 33445588889887 78899999999999887 4578899999998
Q ss_pred hcCCCccccHHHHHHHHHHHHHc
Q 020091 239 SFGEGLPLSHRQARKWMKRAADC 261 (331)
Q Consensus 239 ~~g~g~~~~~~~A~~~~~~a~~~ 261 (331)
.. .+.+++|+..+.+|...
T Consensus 89 l~----s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 89 LQ----SKGYDEAIKVLQRAYSL 107 (284)
T ss_pred Hh----hccccHHHHHHHHHHHH
Confidence 77 56899999999999654
No 248
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.37 E-value=0.066 Score=29.07 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 020091 265 KAQLEHGLGLFTEGEMMKAVVYLELATRAG 294 (331)
Q Consensus 265 ~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~ 294 (331)
.+++.+|.++...+++++|+.+|+++++..
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 467788999999999999999998887654
No 249
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.28 E-value=0.19 Score=47.13 Aligned_cols=75 Identities=16% Similarity=0.109 Sum_probs=54.7
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH-------CC-------------CHHHHHHHHHHHhcCCCccccHHHHHH
Q 020091 194 AQYQLALCLHRGRGVDFNLQEAARWYLRAAE-------GG-------------YVRAMYNTSLCYSFGEGLPLSHRQARK 253 (331)
Q Consensus 194 a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~-------~~-------------~~~a~~~lg~~y~~g~g~~~~~~~A~~ 253 (331)
.++|||-++.. .+.+.-+..+|.+|+. .| .....||.|..|.. .+..-.|++
T Consensus 285 f~NNlGcIh~~----~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh----~grPl~Afq 356 (696)
T KOG2471|consen 285 FNNNLGCIHYQ----LGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLH----SGRPLLAFQ 356 (696)
T ss_pred eecCcceEeee----hhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHh----cCCcHHHHH
Confidence 35678887776 6778888888888874 12 34557788888876 447888888
Q ss_pred HHHHHHHc--CCHHHHHHHHHHHhc
Q 020091 254 WMKRAADC--GHGKAQLEHGLGLFT 276 (331)
Q Consensus 254 ~~~~a~~~--~~~~a~~~Lg~~~~~ 276 (331)
+|.+++.. .++.-|..|+.|.+.
T Consensus 357 Cf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 357 CFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 88888776 667788888776643
No 250
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.14 E-value=3.4 Score=41.15 Aligned_cols=49 Identities=20% Similarity=0.104 Sum_probs=40.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 020091 247 SHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE 295 (331)
Q Consensus 247 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~ 295 (331)
.++-|+..-+.++...-+..+..|+..+.++|++++|-+.|-.|+..+.
T Consensus 978 afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklnt 1026 (1636)
T KOG3616|consen 978 AFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNT 1026 (1636)
T ss_pred chhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhccc
Confidence 5566777777777666678888999999999999999999999988653
No 251
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.95 E-value=0.13 Score=46.16 Aligned_cols=91 Identities=15% Similarity=0.066 Sum_probs=62.6
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHH
Q 020091 106 RWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLL 183 (331)
Q Consensus 106 ~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~ 183 (331)
.-|.-|+. .|.|++|+.+|.+++... ++-.+.|-+..|++.+.+..|..-+..|+.++..
T Consensus 102 E~GN~yFK----QgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-------------- 163 (536)
T KOG4648|consen 102 ERGNTYFK----QGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-------------- 163 (536)
T ss_pred Hhhhhhhh----ccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH--------------
Confidence 34777877 789999999999988875 6777788888888888888888777777766431
Q ss_pred HHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 184 YQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 184 ~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
+..|+..-|..-.. .++..+|.+-++.+++.
T Consensus 164 -------Y~KAYSRR~~AR~~----Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 164 -------YVKAYSRRMQARES----LGNNMEAKKDCETVLAL 194 (536)
T ss_pred -------HHHHHHHHHHHHHH----HhhHHHHHHhHHHHHhh
Confidence 34444444444433 34455666666665543
No 252
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=93.84 E-value=2.1 Score=38.05 Aligned_cols=96 Identities=11% Similarity=-0.091 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc-CCHH--
Q 020091 191 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-GHGK-- 265 (331)
Q Consensus 191 ~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~-- 265 (331)
....+...|.+-.. +.+|.+.|...|+++++. .+...+......+.. ..|.+.|...|++++.. ....
T Consensus 34 ~~~vy~~~A~~E~~---~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~----~~d~~~aR~lfer~i~~l~~~~~~ 106 (280)
T PF05843_consen 34 TYHVYVAYALMEYY---CNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK----LNDINNARALFERAISSLPKEKQS 106 (280)
T ss_dssp -THHHHHHHHHHHH---TCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH----TT-HHHHHHHHHHHCCTSSCHHHC
T ss_pred CHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHhcCchhHH
Confidence 34556666666322 145666677777777764 334433333333332 23777777778777655 2222
Q ss_pred --HHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 266 --AQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 266 --a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
.+......-...|+.+.....++++.+.
T Consensus 107 ~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 107 KKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3334444445567777777777777665
No 253
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.84 E-value=0.97 Score=35.55 Aligned_cols=61 Identities=16% Similarity=0.040 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 020091 228 VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKAQLEHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 228 ~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
..+...++..+.. .+++++|..++++++... +..++..|-.+|...|+..+|+..|++..+
T Consensus 62 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 62 LDALERLAEALLE----AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3444555555543 337777777777776663 345666677777777777777777776643
No 254
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.82 E-value=1.5 Score=34.40 Aligned_cols=106 Identities=20% Similarity=0.011 Sum_probs=68.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCCCc-----cCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 020091 143 AGLMYWEMDKKEAAISLYRQAAVLGDPAAQP-----ANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAAR 217 (331)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~ 217 (331)
.|......++.+.++..+++++.+-...... .-.......++. -...+...++..+.. .+++++|+.
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~----~~~~~~~~l~~~~~~----~~~~~~a~~ 83 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRE----LYLDALERLAEALLE----AGDYEEALR 83 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHH----TT-HHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHH----HHHHHHHHHHHHHHh----ccCHHHHHH
Confidence 3444555678888888888888774433311 122223333322 245667778887766 788999999
Q ss_pred HHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHH
Q 020091 218 WYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD 260 (331)
Q Consensus 218 ~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 260 (331)
++++++.. -+..++..+-.+|.. .++..+|+..|++...
T Consensus 84 ~~~~~l~~dP~~E~~~~~lm~~~~~----~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 84 LLQRALALDPYDEEAYRLLMRALAA----QGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHH----TT-HHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHH----CcCHHHHHHHHHHHHH
Confidence 99999876 456778888888865 4499999999998754
No 255
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.61 E-value=1.6 Score=36.19 Aligned_cols=93 Identities=22% Similarity=0.092 Sum_probs=52.5
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHH
Q 020091 104 LLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEE 178 (331)
Q Consensus 104 ~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 178 (331)
...++..+.. .+++++|...++.+...- .+.+-.+|+.+....+.+++|+..+....+.+-
T Consensus 92 aL~lAk~~ve----~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w---------- 157 (207)
T COG2976 92 ALELAKAEVE----ANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW---------- 157 (207)
T ss_pred HHHHHHHHHh----hccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH----------
Confidence 3344555555 677777777777666432 223445667777666666666666544332210
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC
Q 020091 179 AVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG 226 (331)
Q Consensus 179 A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~ 226 (331)
.+...-.-|.++.. .+|.++|+.-|.+|++.+
T Consensus 158 ------------~~~~~elrGDill~----kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 158 ------------AAIVAELRGDILLA----KGDKQEARAAYEKALESD 189 (207)
T ss_pred ------------HHHHHHHhhhHHHH----cCchHHHHHHHHHHHHcc
Confidence 12223345666654 666777777777776654
No 256
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.53 E-value=2 Score=37.98 Aligned_cols=45 Identities=11% Similarity=0.037 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 020091 118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQ 162 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 162 (331)
.+++..|...|..+... ++.++...|+.+|...|+.+.|...+..
T Consensus 147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 78999999999988765 4788889999999999999988888765
No 257
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=93.53 E-value=2.7 Score=41.78 Aligned_cols=115 Identities=21% Similarity=0.219 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC---------CHHHHH----HHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 020091 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---------STLAMV----DAGLMYWEMDKKEAAISLYRQAAVLGD 168 (331)
Q Consensus 102 ~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~---------~~~a~~----~lg~~~~~~~~~~~A~~~~~~a~~~~~ 168 (331)
..+-.-|.+|.. -.|+++|+++|++.-.-| .|.-.. .-|.-+...|.++.|+..|-.|-.+-.
T Consensus 662 elydkagdlfek----i~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~k 737 (1636)
T KOG3616|consen 662 ELYDKAGDLFEK----IHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIK 737 (1636)
T ss_pred HHHHhhhhHHHH----hhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHH
Confidence 334455677777 789999999998753322 222221 345556667889999988876632210
Q ss_pred CC---CCccCHHHHHHHHHHHHHCCCHHHHH-HHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 169 PA---AQPANAEEAVKLLYQASIAGHVRAQY-QLALCLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 169 ~~---~~~~~~~~A~~~~~~a~~~~~~~a~~-~lg~~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
.. -..+...+|+......-+......+| .++..|.+ .+|++.|.++|.++--
T Consensus 738 aieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan----~~dfe~ae~lf~e~~~ 793 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYAN----KGDFEIAEELFTEADL 793 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhcc----chhHHHHHHHHHhcch
Confidence 00 03455566666665555544444444 56677776 7899999999988743
No 258
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.46 E-value=3.6 Score=33.60 Aligned_cols=130 Identities=14% Similarity=0.095 Sum_probs=75.5
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-CHH-----HHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-STL-----AMV 141 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~-----a~~ 141 (331)
.+..+..+-..+..++|+..+..+.+.....-...+....|-+..+ +++...|+.+|..+.... .|. +..
T Consensus 61 ~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~----kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 61 AFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQ----KGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhh----cccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3444444455566677766666555544433345567777777777 778888888887766543 332 334
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 020091 142 DAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLR 221 (331)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~ 221 (331)
.-++++...|.+++-..-.+-...-+++. -..+.--||..-.. .+|+.+|..||.+
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~m--------------------R~sArEALglAa~k----agd~a~A~~~F~q 192 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPM--------------------RHSAREALGLAAYK----AGDFAKAKSWFVQ 192 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChh--------------------HHHHHHHHhHHHHh----ccchHHHHHHHHH
Confidence 44555555555554444333322222211 13445567776554 6789999999998
Q ss_pred HHHC
Q 020091 222 AAEG 225 (331)
Q Consensus 222 A~~~ 225 (331)
.++.
T Consensus 193 ia~D 196 (221)
T COG4649 193 IAND 196 (221)
T ss_pred HHcc
Confidence 8763
No 259
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.37 E-value=0.47 Score=39.25 Aligned_cols=95 Identities=18% Similarity=0.121 Sum_probs=71.7
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHH
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLR-EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMVDAGLM 146 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~ 146 (331)
+..+....+.+++++|...+...+....|.. .+.+-.+|+.+... .+.+++|...+..-.+.+ .+...-.-|.+
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q----~~k~D~AL~~L~t~~~~~w~~~~~elrGDi 168 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ----QKKADAALKTLDTIKEESWAAIVAELRGDI 168 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH----hhhHHHHHHHHhccccccHHHHHHHHhhhH
Confidence 5555567788999999766654444433321 34566789999988 899999999887766655 44455678999
Q ss_pred HhcCCCHHHHHHHHHHHHHcC
Q 020091 147 YWEMDKKEAAISLYRQAAVLG 167 (331)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~~ 167 (331)
+...|+.++|+..|.+++..+
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHcCchHHHHHHHHHHHHcc
Confidence 999999999999999999885
No 260
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.13 E-value=5.9 Score=35.10 Aligned_cols=211 Identities=16% Similarity=0.103 Sum_probs=105.8
Q ss_pred cCCchHHHhHHHHHHHHHHhCCCCC-------HHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHhC----C-----CH-
Q 020091 76 FTLPQLRAASLVCKSWNDALRPLRE-------AMVLLRWGKRFKHGRGVRK-NLDKALDSFLKGAAR----G-----ST- 137 (331)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~-------~~a~~~LG~~y~~g~g~~~-~~~~A~~~~~~A~~~----~-----~~- 137 (331)
..+|+++.|...+.+...... ..+ +..+|+.|.-... .+ +++.|..|+++|.+. + ++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~----~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~ 78 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLS----KKDKYEEAVKWLQRAYDILEKPGKMDKLSPD 78 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHHHHhhhhccccCCc
Confidence 356777777655554444331 122 3467777877777 77 999999999999765 2 11
Q ss_pred ------HHHHHHHHHHhcCCCH---HHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHC-CCHHHHH
Q 020091 138 ------LAMVDAGLMYWEMDKK---EAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIA-GHVRAQY 196 (331)
Q Consensus 138 ------~a~~~lg~~~~~~~~~---~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~-~~~~a~~ 196 (331)
..+..|+.+|...+.. ++|..+.+.+-...+... ...+.+.+...+.+.+.. +.+++-+
T Consensus 79 ~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~ 158 (278)
T PF08631_consen 79 GSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNF 158 (278)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchH
Confidence 2456788888777654 344444444432222211 334566666666665543 2233333
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHC----C-C-HHHHHHHHHHHhcCC-C-cccc--HHHHHHHHHHHHHc-C---
Q 020091 197 QLALCLHRGRGVDFNLQEAARWYLRAAEG----G-Y-VRAMYNTSLCYSFGE-G-LPLS--HRQARKWMKRAADC-G--- 262 (331)
Q Consensus 197 ~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~-~-~~a~~~lg~~y~~g~-g-~~~~--~~~A~~~~~~a~~~-~--- 262 (331)
....-...- -...+...+...+.+.+-. + + ...-.-+-.++..+. + .... .+.....+.+.... +
T Consensus 159 ~~~l~~i~~-l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~l 237 (278)
T PF08631_consen 159 DSILHHIKQ-LAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQL 237 (278)
T ss_pred HHHHHHHHH-HHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCC
Confidence 222111100 0023344555555444321 1 1 111111111221111 1 1111 33333444433222 1
Q ss_pred CHHH-------HHHHHHHHhccCCHHHHHHHHHHHHH
Q 020091 263 HGKA-------QLEHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 263 ~~~a-------~~~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
...+ ..+-|...++.++|++|..||+-+..
T Consensus 238 s~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 238 SAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 1222 24567788999999999999998763
No 261
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.11 E-value=2.6 Score=35.25 Aligned_cols=51 Identities=10% Similarity=-0.052 Sum_probs=36.2
Q ss_pred cHHHHHHHHHHHHHcCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHH
Q 020091 247 SHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA 297 (331)
Q Consensus 247 ~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~ 297 (331)
..+.|+.-..+|++.+. ..|...-+..|.++..+++|+.-|++..+.++..
T Consensus 149 k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 149 KWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred hHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 55666666667766643 4566666777777888888888888888877644
No 262
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.06 E-value=0.77 Score=38.27 Aligned_cols=61 Identities=11% Similarity=0.178 Sum_probs=47.7
Q ss_pred HhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC---C---CHHHHHHHHHHHhcCCCHHHHHHH
Q 020091 94 ALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---G---STLAMVDAGLMYWEMDKKEAAISL 159 (331)
Q Consensus 94 ~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~---~---~~~a~~~lg~~~~~~~~~~~A~~~ 159 (331)
..+...+++.++.||.+|.. .|.++|+.+|.++.+. + +++....|+.+|...+++++|--|
T Consensus 134 ~~~~l~t~elq~aLAtyY~k-----rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYiw 200 (203)
T PF11207_consen 134 GTPELETAELQYALATYYTK-----RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYIW 200 (203)
T ss_pred CCCCCCCHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhhh
Confidence 33445688888888888876 7888898888888865 2 678888888888888888887554
No 263
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.94 E-value=0.62 Score=29.92 Aligned_cols=47 Identities=19% Similarity=0.266 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhhhch
Q 020091 265 KAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADHVKNVILQQLSA 311 (331)
Q Consensus 265 ~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~--~~~~a~~~l~~~~~~l~~ 311 (331)
+..+.||..++..|++++|..+.+.+++. ++.++..+...+...+.+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k 50 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK 50 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence 45678899999999999999999999886 466777766666655543
No 264
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.89 E-value=1.9 Score=33.54 Aligned_cols=85 Identities=11% Similarity=0.129 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHc--CCHHHHH
Q 020091 227 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH----GKAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADH 300 (331)
Q Consensus 227 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~----~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~--~~~~a~~ 300 (331)
....+++++|++..-. -..|..+.+..++......+ .+-.+.|+..++..++|++++.|....++. ++.++..
T Consensus 31 s~~s~f~lAwaLV~S~-~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSR-DTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred hHHHHHHHHHHHHccc-chHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 3567889999985433 36688899999999886333 355678999999999999999999999876 5677777
Q ss_pred HHHHHHhhhchh
Q 020091 301 VKNVILQQLSAT 312 (331)
Q Consensus 301 ~l~~~~~~l~~~ 312 (331)
+-..+...++++
T Consensus 110 Lk~~ied~itke 121 (149)
T KOG3364|consen 110 LKETIEDKITKE 121 (149)
T ss_pred HHHHHHHHHhhc
Confidence 766776666554
No 265
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=92.87 E-value=0.45 Score=29.25 Aligned_cols=31 Identities=23% Similarity=0.301 Sum_probs=27.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCHH
Q 020091 267 QLEHGLGLFTEGEMMKAVVYLELATRAGETA 297 (331)
Q Consensus 267 ~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~ 297 (331)
.+.|+..|...||.+.|...++..+..|+..
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~~~~~ 32 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEEGDEA 32 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHcCCHH
Confidence 4678999999999999999999999877754
No 266
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.63 E-value=0.44 Score=42.83 Aligned_cols=94 Identities=18% Similarity=-0.038 Sum_probs=77.4
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC--CHHHHHHH
Q 020091 195 QYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKAQLEH 270 (331)
Q Consensus 195 ~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~L 270 (331)
.-.-|+-|.. ++.|++|+.+|.+++... ++....+-+..|+. .+.+..|..-...|+..+ +..++-.-
T Consensus 100 iKE~GN~yFK----QgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk----~K~FA~AE~DC~~AiaLd~~Y~KAYSRR 171 (536)
T KOG4648|consen 100 IKERGNTYFK----QGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLK----QKSFAQAEEDCEAAIALDKLYVKAYSRR 171 (536)
T ss_pred HHHhhhhhhh----ccchhHHHHHhhhhhccCCCCccchhhHHHHHHH----HHHHHHHHHhHHHHHHhhHHHHHHHHHH
Confidence 3466777776 899999999999998874 46667788888887 567888888888887764 56788888
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCH
Q 020091 271 GLGLFTEGEMMKAVVYLELATRAGET 296 (331)
Q Consensus 271 g~~~~~~~~~~~A~~~~~~A~~~~~~ 296 (331)
|......|+..+|.+-++.+++.-+.
T Consensus 172 ~~AR~~Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 172 MQARESLGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHHHhhHHHHHHhHHHHHhhCcc
Confidence 88889999999999999999988655
No 267
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.71 E-value=1.5 Score=36.56 Aligned_cols=72 Identities=14% Similarity=0.094 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc---C---CHHHHHHHHHHHhccCCHH
Q 020091 211 NLQEAARWYLRAAEG---GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC---G---HGKAQLEHGLGLFTEGEMM 281 (331)
Q Consensus 211 d~~~A~~~~~~A~~~---~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~---~~~a~~~Lg~~~~~~~~~~ 281 (331)
+-+.|.+-|.++-.. .++.-++.||..|. ..|.++++..|.++.+. + +++....|+.+++.+++++
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-----krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-----KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 356777777776543 67888888888885 45888999999988876 2 4677888999999999999
Q ss_pred HHHHHH
Q 020091 282 KAVVYL 287 (331)
Q Consensus 282 ~A~~~~ 287 (331)
+|+-|-
T Consensus 196 ~AYiwa 201 (203)
T PF11207_consen 196 QAYIWA 201 (203)
T ss_pred hhhhhe
Confidence 998763
No 268
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.67 E-value=4.6 Score=38.41 Aligned_cols=60 Identities=10% Similarity=-0.029 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 020091 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (331)
Q Consensus 103 a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (331)
+-..|+++... .|..++|++.|+...+. ++.....+|-.++...+.+.++..++.+--+.
T Consensus 261 ~KrRLAmCark----lGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 261 AKRRLAMCARK----LGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hHHHHHHHHHH----hCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 45678888888 89999999999998864 35567889999999999999999988886443
No 269
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.63 E-value=9.3 Score=33.90 Aligned_cols=174 Identities=14% Similarity=0.027 Sum_probs=105.3
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHH
Q 020091 120 NLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLA 199 (331)
Q Consensus 120 ~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 199 (331)
..++-.+|+.+-+.... +.-+.-+.-....+++.+|...|..+....+ ++.++..-|+
T Consensus 118 Pesqlr~~ld~~~~~~~-e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~---------------------~~~~~~~~la 175 (304)
T COG3118 118 PESQLRQFLDKVLPAEE-EEALAEAKELIEAEDFGEAAPLLKQALQAAP---------------------ENSEAKLLLA 175 (304)
T ss_pred cHHHHHHHHHHhcChHH-HHHHHHhhhhhhccchhhHHHHHHHHHHhCc---------------------ccchHHHHHH
Confidence 34455666666554422 2222333344455677777777776666544 5688888999
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHH-HH--HHHhcCCCccccHHHHHHHHHHHH-HcCCHHHHHHHHHHHh
Q 020091 200 LCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYN-TS--LCYSFGEGLPLSHRQARKWMKRAA-DCGHGKAQLEHGLGLF 275 (331)
Q Consensus 200 ~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~-lg--~~y~~g~g~~~~~~~A~~~~~~a~-~~~~~~a~~~Lg~~~~ 275 (331)
.+|.. .++.+.|...+...-.......... .+ ..+.+ ..+..+....-+++. +-++.++.+.|+..+.
T Consensus 176 ~~~l~----~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q----aa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~ 247 (304)
T COG3118 176 ECLLA----AGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ----AAATPEIQDLQRRLAADPDDVEAALALADQLH 247 (304)
T ss_pred HHHHH----cCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH----HhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99987 7888888888877533222222221 11 11111 112222222333333 3368899999999999
Q ss_pred ccCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhhhchhcHHHHHHHHHhh
Q 020091 276 TEGEMMKAVVYLELATRA----GETAADHVKNVILQQLSATSRDRAMLVVDSW 324 (331)
Q Consensus 276 ~~~~~~~A~~~~~~A~~~----~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~ 324 (331)
..|+.+.|+..+--.+.. .+..+...+-.++..+...|. .+....+++
T Consensus 248 ~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp-~~~~~RRkL 299 (304)
T COG3118 248 LVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP-LVLAYRRKL 299 (304)
T ss_pred HcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH-HHHHHHHHH
Confidence 999999999998877765 245667777777777777775 454444443
No 270
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.44 E-value=3.5 Score=35.57 Aligned_cols=97 Identities=14% Similarity=0.078 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----------CCH----------HHHHHHHHHHhcCCCHHHHHHHHH
Q 020091 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----------GST----------LAMVDAGLMYWEMDKKEAAISLYR 161 (331)
Q Consensus 102 ~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----------~~~----------~a~~~lg~~~~~~~~~~~A~~~~~ 161 (331)
.++..-|.-++. .+++.+|...|+.|+.. |.+ .-+.|.+.|+...+++-++++...
T Consensus 179 ~~l~q~GN~lfk----~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s 254 (329)
T KOG0545|consen 179 PVLHQEGNRLFK----LGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS 254 (329)
T ss_pred HHHHHhhhhhhh----hccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH
Confidence 345555555555 67888888888877632 222 233455666666666666666665
Q ss_pred HHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC
Q 020091 162 QAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY 227 (331)
Q Consensus 162 ~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~ 227 (331)
..+...+ ++..|+|.-|..+.. .=+..+|..-|.++++.+.
T Consensus 255 eiL~~~~---------------------~nvKA~frRakAhaa----~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 255 EILRHHP---------------------GNVKAYFRRAKAHAA----VWNEAEAKADLQKVLELDP 295 (329)
T ss_pred HHHhcCC---------------------chHHHHHHHHHHHHh----hcCHHHHHHHHHHHHhcCh
Confidence 5555544 466666666666654 2345666666666665443
No 271
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.20 E-value=0.27 Score=26.32 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHH
Q 020091 139 AMVDAGLMYWEMDKKEAAISLYR 161 (331)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~ 161 (331)
+.+.||..+...|+.++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45556666666666666665553
No 272
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.61 E-value=0.38 Score=25.72 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHH
Q 020091 265 KAQLEHGLGLFTEGEMMKAVVYLE 288 (331)
Q Consensus 265 ~a~~~Lg~~~~~~~~~~~A~~~~~ 288 (331)
.+.+.||..+...|+.++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456788888888999999888775
No 273
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=90.44 E-value=2.2 Score=33.18 Aligned_cols=61 Identities=10% Similarity=0.084 Sum_probs=41.8
Q ss_pred CCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 020091 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDA 143 (331)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~l 143 (331)
.++.-++...++..+.+ .+..+|..+..+|..|.. .++..+|-+.+++|++.|..+|+.++
T Consensus 98 ~~~kkDqLdki~~~l~k--n~~~~p~~L~kia~Ay~k----lg~~r~~~ell~~ACekG~kEAC~nI 158 (161)
T PF09205_consen 98 KQGKKDQLDKIYNELKK--NEEINPEFLVKIANAYKK----LGNTREANELLKEACEKGLKEACRNI 158 (161)
T ss_dssp HTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHH----TT-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HhccHHHHHHHHHHHhh--ccCCCHHHHHHHHHHHHH----hcchhhHHHHHHHHHHhchHHHHHHh
Confidence 45566666555555554 234578899999999988 89999999999999999999988765
No 274
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=90.28 E-value=0.48 Score=30.42 Aligned_cols=32 Identities=6% Similarity=-0.024 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
+.+|.|+..+.+.|++++|..+...+++..|.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 45788888899999999999999999888664
No 275
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.91 E-value=4 Score=33.53 Aligned_cols=93 Identities=18% Similarity=0.103 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc----
Q 020091 191 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC---- 261 (331)
Q Consensus 191 ~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~-----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---- 261 (331)
-..++..+|..|.. .||.++|+++|.++.+.. ..+.+.++-.+... .+|+.....+..++-..
T Consensus 35 ir~~~~~l~~~~~~----~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~----~~d~~~v~~~i~ka~~~~~~~ 106 (177)
T PF10602_consen 35 IRMALEDLADHYCK----IGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF----FGDWSHVEKYIEKAESLIEKG 106 (177)
T ss_pred HHHHHHHHHHHHHH----hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHhcc
Confidence 35678899999987 789999999999987642 13344444444433 34888888888887543
Q ss_pred CCHHHHH----HHHHHHhccCCHHHHHHHHHHHH
Q 020091 262 GHGKAQL----EHGLGLFTEGEMMKAVVYLELAT 291 (331)
Q Consensus 262 ~~~~a~~----~Lg~~~~~~~~~~~A~~~~~~A~ 291 (331)
++++... .-|..+...++|.+|...|-.+.
T Consensus 107 ~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 107 GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccC
Confidence 4454443 23555666899999998887764
No 276
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=89.73 E-value=3.7 Score=31.26 Aligned_cols=87 Identities=13% Similarity=0.077 Sum_probs=50.9
Q ss_pred CCCHHHHHHHHHHHHhC-------------C-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHH
Q 020091 118 RKNLDKALDSFLKGAAR-------------G-STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLL 183 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~-------------~-~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~ 183 (331)
.+-+++|..-+++|.+. | ++.++..|+-.+...|++++++..-. .|+.||
T Consensus 22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~----------------~aL~YF 85 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSAD----------------RALRYF 85 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHH----------------HHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHH----------------HHHHHH
Confidence 46788888888888654 1 34455677778888888888876543 344555
Q ss_pred HHHHHCCCHHHHH------HHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 184 YQASIAGHVRAQY------QLALCLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 184 ~~a~~~~~~~a~~------~lg~~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
.+-=++...+... +-+..+.. .+..++|+..|+.+.+
T Consensus 86 NRRGEL~qdeGklWIaaVfsra~Al~~----~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 86 NRRGELHQDEGKLWIAAVFSRAVALEG----LGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHH--TTSTHHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHH
T ss_pred hhccccccccchhHHHHHHHHHHHHHh----cCChHHHHHHHHHHHH
Confidence 5544443333333 33333332 5667777777777754
No 277
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=89.34 E-value=1.1 Score=39.76 Aligned_cols=68 Identities=16% Similarity=0.162 Sum_probs=42.2
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHH
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVD 142 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~ 142 (331)
+..+......|+.+.|..++...+..+++ +++++...|.+... .++.-+|-++|-+|... ++.+|+.+
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~--~p~~L~e~G~f~E~----~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPT--NPQILIEMGQFREM----HNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCC--CHHHHHHHhHHHHh----hhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 34444555667777776666666666554 56666667766666 56666777777766543 46665544
No 278
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=89.16 E-value=1.4 Score=39.55 Aligned_cols=91 Identities=18% Similarity=0.233 Sum_probs=69.8
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHH
Q 020091 106 RWGKRFKHGRGVRKNLDKALDSFLKGAARG--ST----LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEA 179 (331)
Q Consensus 106 ~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~----~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A 179 (331)
.=|.-|+. .++|..|+..|.+++... ++ ..+.|-+-+....|++..|+.=..++...++
T Consensus 86 eeGN~~fK----~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P----------- 150 (390)
T KOG0551|consen 86 EEGNEYFK----EKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKP----------- 150 (390)
T ss_pred HHhHHHHH----hhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCc-----------
Confidence 34777777 799999999999998763 32 2355777777777888888888888888776
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 180 VKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 180 ~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
.+..+++.=+.|+.. .+.+.+|..|.....+.
T Consensus 151 ----------~h~Ka~~R~Akc~~e----Le~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 151 ----------THLKAYIRGAKCLLE----LERFAEAVNWCEEGLQI 182 (390)
T ss_pred ----------chhhhhhhhhHHHHH----HHHHHHHHHHHhhhhhh
Confidence 478888888888876 66788888888877543
No 279
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=88.96 E-value=1.5 Score=31.84 Aligned_cols=49 Identities=16% Similarity=0.185 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHHhC----C-------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 020091 118 RKNLDKALDSFLKGAAR----G-------STLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~----~-------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (331)
.+|+..|++.+.+..+. + ...+..++|.++...|++++|+..+++|+.+
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46777776665555432 1 2356677888888888888888888877765
No 280
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.62 E-value=19 Score=32.76 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=13.2
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 020091 191 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRA 222 (331)
Q Consensus 191 ~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A 222 (331)
+.-|...++.+++. .++..++.++..+.
T Consensus 208 D~Wa~Ha~aHVlem----~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 208 DCWASHAKAHVLEM----NGRHKEGKEFMYKT 235 (491)
T ss_pred chHHHHHHHHHHHh----cchhhhHHHHHHhc
Confidence 34444444444443 34455555555444
No 281
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.58 E-value=15 Score=31.78 Aligned_cols=86 Identities=15% Similarity=0.015 Sum_probs=67.8
Q ss_pred CCCHHHHHHHHHHHHH----------CC----------CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHH
Q 020091 209 DFNLQEAARWYLRAAE----------GG----------YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKA 266 (331)
Q Consensus 209 ~~d~~~A~~~~~~A~~----------~~----------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a 266 (331)
.+++.+|...|+.|+. .| ....+.|.+.|+.. ..++-++++.....+.. ++..|
T Consensus 191 ~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~----~~e~yevleh~seiL~~~~~nvKA 266 (329)
T KOG0545|consen 191 LGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLK----KEEYYEVLEHCSEILRHHPGNVKA 266 (329)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhh----HHHHHHHHHHHHHHHhcCCchHHH
Confidence 6778888888887753 12 34456778888865 55888888888887766 78899
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCHHH
Q 020091 267 QLEHGLGLFTEGEMMKAVVYLELATRAGETAA 298 (331)
Q Consensus 267 ~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a 298 (331)
+|.-|..+..--+.++|..-|.++++.++.-+
T Consensus 267 ~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 267 YFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 99999999989999999999999999987644
No 282
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=88.48 E-value=1.7 Score=38.57 Aligned_cols=64 Identities=19% Similarity=0.186 Sum_probs=54.0
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC
Q 020091 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA 171 (331)
Q Consensus 103 a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~ 171 (331)
|+..-|.++.. |+.++|...|+-|..+. +++++..+|.+....++.-+|-.+|-+|+...+...
T Consensus 119 Al~~A~~~~~~-----Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 119 ALKAAGRSRKD-----GKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred HHHHHHHHHhc-----cchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence 34445666666 78999999999998874 999999999999989999999999999998877554
No 283
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=88.27 E-value=1.3 Score=25.82 Aligned_cols=30 Identities=7% Similarity=0.190 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHH--HHHHHHcC
Q 020091 265 KAQLEHGLGLFTEGEMMKAVVY--LELATRAG 294 (331)
Q Consensus 265 ~a~~~Lg~~~~~~~~~~~A~~~--~~~A~~~~ 294 (331)
+..+.+|..++.+|++++|+.+ |+-++..+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld 33 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALD 33 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 4567889999999999999999 54776554
No 284
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=87.95 E-value=4.3 Score=29.35 Aligned_cols=57 Identities=12% Similarity=0.107 Sum_probs=45.2
Q ss_pred hccCCchHHHhHHHHHHHHHHhCCCCC-------HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC
Q 020091 74 ASFTLPQLRAASLVCKSWNDALRPLRE-------AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR 134 (331)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~ 134 (331)
..+..+++.+|.+...+++........ ..++.++|.++.. .|++++|+..++.|++.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~----~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR----FGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Confidence 346678899888887777776654433 4578889999988 89999999999999865
No 285
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=87.86 E-value=8.9 Score=29.24 Aligned_cols=94 Identities=15% Similarity=0.168 Sum_probs=56.8
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCCCC----------CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH------
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLR----------EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGA------ 132 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~------ 132 (331)
+..+-..+..|-+.+|..-|+..+....... ++..+..|.-.+-. .++|++++.--.+|+
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~----Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAG----LGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHHhhc
Confidence 3344445667888888888888887764432 22334444455544 678777655544444
Q ss_pred -hCCCHH------HHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 020091 133 -ARGSTL------AMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (331)
Q Consensus 133 -~~~~~~------a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (331)
++..-+ +.++-|..+...|+.++|+..|+++.++
T Consensus 89 GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 89 GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp --TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 444333 4455666666679999999999999875
No 286
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.75 E-value=26 Score=33.43 Aligned_cols=124 Identities=11% Similarity=0.019 Sum_probs=81.3
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----C-----CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--C
Q 020091 194 AQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----G-----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--G 262 (331)
Q Consensus 194 a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~-----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~ 262 (331)
....||.++.. -.+|.+-|...+++|... + ..++...|+.+|.+- .+....|...+++|++. +
T Consensus 48 t~LqLg~lL~~---yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~---~~s~~~~KalLrkaielsq~ 121 (629)
T KOG2300|consen 48 THLQLGALLLR---YTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQL---AQSFPPAKALLRKAIELSQS 121 (629)
T ss_pred HHHHHHHHHHH---HhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHhcC
Confidence 34567765543 267888888888888542 1 245667788888662 23788888899999876 3
Q ss_pred CH----HHHHHHHHHHhccCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHhhhchhcHHHHHHHHHh
Q 020091 263 HG----KAQLEHGLGLFTEGEMMKAVVYLELATRAGE------TAADHVKNVILQQLSATSRDRAMLVVDS 323 (331)
Q Consensus 263 ~~----~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~------~~a~~~l~~~~~~l~~~~~~~a~~~~~~ 323 (331)
.+ .-.+.|+.++.-.+|+..|++.+...++.-+ ....+.+....-.+.+-+..++..++..
T Consensus 122 ~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~ 192 (629)
T KOG2300|consen 122 VPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQR 192 (629)
T ss_pred CchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 33 3346788988889999999998766655433 3345555555544444455565555443
No 287
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.13 E-value=21 Score=32.30 Aligned_cols=32 Identities=9% Similarity=-0.011 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 020091 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLG 167 (331)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~ 167 (331)
....+..++.+..+.|.++.|...+.++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~ 176 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLN 176 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccC
Confidence 44566777778888888888888888887755
No 288
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=86.72 E-value=21 Score=31.33 Aligned_cols=78 Identities=21% Similarity=0.218 Sum_probs=45.3
Q ss_pred HHHHHHHHHH--HHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHH---------------Hc--CCHHHHHHHHHHHhhh
Q 020091 249 RQARKWMKRA--ADCGHGKAQLEHGLGLFTEGEMMKAVVYLELAT---------------RA--GETAADHVKNVILQQL 309 (331)
Q Consensus 249 ~~A~~~~~~a--~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~---------------~~--~~~~a~~~l~~~~~~l 309 (331)
..|+.|- +. -..|+++-+..+|..|++.+++.+|..+|-..- .. ..+...+....++..+
T Consensus 74 ~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL 152 (260)
T PF04190_consen 74 KAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYL 152 (260)
T ss_dssp HHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHH
T ss_pred HHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHH
Confidence 4555555 21 123677777777777777777777777662211 11 2344566666777777
Q ss_pred chhcHHHHHHHHHhhhcC
Q 020091 310 SATSRDRAMLVVDSWRAM 327 (331)
Q Consensus 310 ~~~~~~~a~~~~~~~~~~ 327 (331)
.-++++-|...+..+.+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 778888888777666543
No 289
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=86.28 E-value=2.5 Score=24.67 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHH--HHHHHHc
Q 020091 138 LAMVDAGLMYWEMDKKEAAISL--YRQAAVL 166 (331)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~--~~~a~~~ 166 (331)
+.++.+|..+...|++++|+++ |+-++.+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~l 32 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCAL 32 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 3455566666666666666666 3354444
No 290
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=85.70 E-value=3 Score=36.62 Aligned_cols=58 Identities=14% Similarity=0.029 Sum_probs=32.6
Q ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 020091 215 AARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFT 276 (331)
Q Consensus 215 A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~ 276 (331)
|..||.+|+.. +....++.||.++.. .+|.-.|+.||-++.-. ..+.|..+|..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~----~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASY----QGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHH----TT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhcc----ccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 55666666543 556666666666654 23666666666666533 445566666665544
No 291
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=85.61 E-value=3.1 Score=40.28 Aligned_cols=84 Identities=17% Similarity=-0.009 Sum_probs=59.7
Q ss_pred CCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC--HHHHHHHHHHHhccCCHHH
Q 020091 208 VDFNLQEAARWYLRAAEGGY---VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMK 282 (331)
Q Consensus 208 ~~~d~~~A~~~~~~A~~~~~---~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~~~~~~~ 282 (331)
..+|...|+.++.+|..... .....+|+.+..+- | -...|-.++.++....+ +...+-+|..+....|.++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~-~---~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHY-G---LHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHh-h---hhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 47888888888888865432 23456777776541 1 45567777777776643 5566778888888888889
Q ss_pred HHHHHHHHHHcCC
Q 020091 283 AVVYLELATRAGE 295 (331)
Q Consensus 283 A~~~~~~A~~~~~ 295 (331)
|++.|+.|++..+
T Consensus 695 a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 695 ALEAFRQALKLTT 707 (886)
T ss_pred HHHHHHHHHhcCC
Confidence 9999988888753
No 292
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=85.05 E-value=3.1 Score=28.85 Aligned_cols=22 Identities=18% Similarity=0.155 Sum_probs=17.2
Q ss_pred HHHhccCCHHHHHHHHHHHHHc
Q 020091 272 LGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 272 ~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
.-+...|++++|+.+|+.|++.
T Consensus 14 Ve~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 14 VKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHhcCCHHHHHHHHHHHHHH
Confidence 3366788899999988888873
No 293
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.92 E-value=0.9 Score=40.86 Aligned_cols=85 Identities=16% Similarity=0.107 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHH
Q 020091 118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQ 195 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~ 195 (331)
.+++++|++.|..|+.++ .+..+..-+.++...+....|+.=|..|++++++. +..+
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds---------------------a~~y 185 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS---------------------AKGY 185 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc---------------------cccc
Confidence 566777777777777775 33444566667777777777777777777776532 2223
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC
Q 020091 196 YQLALCLHRGRGVDFNLQEAARWYLRAAEGGY 227 (331)
Q Consensus 196 ~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~ 227 (331)
-.-|..... .+++.+|.++|..|++.++
T Consensus 186 kfrg~A~rl----lg~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 186 KFRGYAERL----LGNWEEAAHDLALACKLDY 213 (377)
T ss_pred chhhHHHHH----hhchHHHHHHHHHHHhccc
Confidence 333333332 4566666666666666654
No 294
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.59 E-value=57 Score=34.33 Aligned_cols=182 Identities=16% Similarity=0.126 Sum_probs=98.4
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC---------CccCHHHHHHHHHHHHH
Q 020091 118 RKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA---------QPANAEEAVKLLYQASI 188 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~---------~~~~~~~A~~~~~~a~~ 188 (331)
-++.+.|.++-+ ..+.+..|..||.....++...+|++-|-+|- ++.. ..+.+++-+.++.-|-+
T Consensus 1088 i~~ldRA~efAe---~~n~p~vWsqlakAQL~~~~v~dAieSyikad---Dps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAE---RCNEPAVWSQLAKAQLQGGLVKDAIESYIKAD---DPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred hhhHHHHHHHHH---hhCChHHHHHHHHHHHhcCchHHHHHHHHhcC---CcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 456666665543 34677888888888888888888888877652 1111 55666666666665532
Q ss_pred C------------------------------CCHHHHHHHH-HHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 020091 189 A------------------------------GHVRAQYQLA-LCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLC 237 (331)
Q Consensus 189 ~------------------------------~~~~a~~~lg-~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~lg~~ 237 (331)
. +++... ..| .||. .+.|+.|.-+|.-... .+....-.+
T Consensus 1162 k~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~-~vGdrcf~-----~~~y~aAkl~y~~vSN----~a~La~TLV 1231 (1666)
T KOG0985|consen 1162 KVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQ-QVGDRCFE-----EKMYEAAKLLYSNVSN----FAKLASTLV 1231 (1666)
T ss_pred hhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHH-HHhHHHhh-----hhhhHHHHHHHHHhhh----HHHHHHHHH
Confidence 2 111111 122 1222 2345555555543321 111111112
Q ss_pred HhcCCCccccHHHHHHHHHHHHHc----------------------C-----CHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 020091 238 YSFGEGLPLSHRQARKWMKRAADC----------------------G-----HGKAQLEHGLGLFTEGEMMKAVVYLELA 290 (331)
Q Consensus 238 y~~g~g~~~~~~~A~~~~~~a~~~----------------------~-----~~~a~~~Lg~~~~~~~~~~~A~~~~~~A 290 (331)
|. +.++-|...-++|-.. | +.+-.-.|-..|.+.|-|++-+..++-+
T Consensus 1232 ~L------geyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1232 YL------GEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HH------HHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 21 1444444444433211 1 2333445666677788888888888876
Q ss_pred HHc--CCHHHHHHHHHHHhhhchhcHHHHHHHH
Q 020091 291 TRA--GETAADHVKNVILQQLSATSRDRAMLVV 321 (331)
Q Consensus 291 ~~~--~~~~a~~~l~~~~~~l~~~~~~~a~~~~ 321 (331)
+.. ....-..-++.++.+..+...-++.++|
T Consensus 1306 LGLERAHMgmfTELaiLYskykp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1306 LGLERAHMGMFTELAILYSKYKPEKMMEHLKLF 1338 (1666)
T ss_pred hchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 533 2222334567777888777777777665
No 295
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.56 E-value=32 Score=31.36 Aligned_cols=79 Identities=15% Similarity=0.029 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc---CCHHH---HHHHHHHHhccCCH
Q 020091 209 DFNLQEAARWYLRAAEGGY--VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC---GHGKA---QLEHGLGLFTEGEM 280 (331)
Q Consensus 209 ~~d~~~A~~~~~~A~~~~~--~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~~~~a---~~~Lg~~~~~~~~~ 280 (331)
.+-+++|.+.-++|++.+. .-+...++.++.. ...+.++.++..+..+. +.-.+ +.+.+.++.+.+.+
T Consensus 188 ~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem----~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aey 263 (491)
T KOG2610|consen 188 CGIYDDAEKQADRALQINRFDCWASHAKAHVLEM----NGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEY 263 (491)
T ss_pred hccchhHHHHHHhhccCCCcchHHHHHHHHHHHh----cchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccch
Confidence 4556666666666665543 3333445555432 23566666665554322 11111 23445555555666
Q ss_pred HHHHHHHHHHH
Q 020091 281 MKAVVYLELAT 291 (331)
Q Consensus 281 ~~A~~~~~~A~ 291 (331)
+.|+..|.+-+
T Consensus 264 e~aleIyD~ei 274 (491)
T KOG2610|consen 264 EKALEIYDREI 274 (491)
T ss_pred hHHHHHHHHHH
Confidence 66666665443
No 296
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=84.42 E-value=2 Score=29.81 Aligned_cols=33 Identities=36% Similarity=0.233 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHH
Q 020091 152 KKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASI 188 (331)
Q Consensus 152 ~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~ 188 (331)
+.++|+.+..+|++.+ ..+++++|+.+|..|++
T Consensus 2 ~l~kai~Lv~~A~~eD----~~gny~eA~~lY~~ale 34 (75)
T cd02680 2 DLERAHFLVTQAFDED----EKGNAEEAIELYTEAVE 34 (75)
T ss_pred CHHHHHHHHHHHHHhh----HhhhHHHHHHHHHHHHH
Confidence 3456666666665554 35666666666666655
No 297
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.74 E-value=0.58 Score=42.05 Aligned_cols=95 Identities=13% Similarity=-0.040 Sum_probs=75.1
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGL 145 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~ 145 (331)
.-.++.+.++.|.+++|+..|...+...+ +.+..+..-+.++.. .+....|+.-+..|+..+ ....+-.-|.
T Consensus 117 ~k~~A~eAln~G~~~~ai~~~t~ai~lnp--~~a~l~~kr~sv~lk----l~kp~~airD~d~A~ein~Dsa~~ykfrg~ 190 (377)
T KOG1308|consen 117 KKVQASEALNDGEFDTAIELFTSAIELNP--PLAILYAKRASVFLK----LKKPNAAIRDCDFAIEINPDSAKGYKFRGY 190 (377)
T ss_pred HHHHHHHHhcCcchhhhhcccccccccCC--chhhhcccccceeee----ccCCchhhhhhhhhhccCcccccccchhhH
Confidence 44566778999999999888877776644 355556666777776 889999999999999986 4445667788
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCC
Q 020091 146 MYWEMDKKEAAISLYRQAAVLGD 168 (331)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~~~ 168 (331)
.....|+.++|.+.+..++.++.
T Consensus 191 A~rllg~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 191 AERLLGNWEEAAHDLALACKLDY 213 (377)
T ss_pred HHHHhhchHHHHHHHHHHHhccc
Confidence 88888999999999999998854
No 298
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=83.35 E-value=7.4 Score=34.98 Aligned_cols=95 Identities=15% Similarity=0.002 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH----CC----CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC
Q 020091 191 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE----GG----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG 262 (331)
Q Consensus 191 ~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~----~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 262 (331)
..+|+.+.+..|.+ .+|.+.|++++++..+ .| -......+|..|..-.-+.++.++|...+++ .|
T Consensus 103 v~ea~~~kaeYycq----igDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~---Gg 175 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQ----IGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEE---GG 175 (393)
T ss_pred HHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh---CC
Confidence 46789999999987 8899999999988754 23 3455678899886655566777777777664 46
Q ss_pred CHHHHHHH----HHHHhccCCHHHHHHHHHHHHH
Q 020091 263 HGKAQLEH----GLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 263 ~~~a~~~L----g~~~~~~~~~~~A~~~~~~A~~ 292 (331)
+++-.+.| |...+.-+||.+|...|...+.
T Consensus 176 DWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 176 DWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred ChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 77766543 5555668899999988877764
No 299
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=82.54 E-value=8.3 Score=27.74 Aligned_cols=44 Identities=9% Similarity=-0.088 Sum_probs=29.6
Q ss_pred HHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 126 DSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 126 ~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
.-+++++.. +++++.+.||..+...|++++|+..+...+..+..
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 344454443 47788888888888888888888888888876544
No 300
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=82.49 E-value=12 Score=30.76 Aligned_cols=97 Identities=13% Similarity=0.105 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccC
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPAN 175 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 175 (331)
..++..+|..|.. .||.+.|++.|.++-+.. ..+.++++-.+....+|......+..++-.....
T Consensus 36 r~~~~~l~~~~~~----~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~------ 105 (177)
T PF10602_consen 36 RMALEDLADHYCK----IGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK------ 105 (177)
T ss_pred HHHHHHHHHHHHH----hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc------
Confidence 4688899999999 899999999999987653 2334455555555567888777777776544221
Q ss_pred HHHHHHHHHHHHHCCCHHHH----HHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 176 AEEAVKLLYQASIAGHVRAQ----YQLALCLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 176 ~~~A~~~~~~a~~~~~~~a~----~~lg~~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
.|+.+.. ..-|..+.. .++|.+|.+.|..+..
T Consensus 106 -------------~~d~~~~nrlk~~~gL~~l~----~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 106 -------------GGDWERRNRLKVYEGLANLA----QRDFKEAAELFLDSLS 141 (177)
T ss_pred -------------cchHHHHHHHHHHHHHHHHH----hchHHHHHHHHHccCc
Confidence 1222222 223344433 6789999999988753
No 301
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=82.25 E-value=16 Score=26.28 Aligned_cols=60 Identities=18% Similarity=0.112 Sum_probs=40.9
Q ss_pred HHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhhhchhc
Q 020091 254 WMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA----GETAADHVKNVILQQLSATS 313 (331)
Q Consensus 254 ~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~----~~~~a~~~l~~~~~~l~~~~ 313 (331)
-++++++. ++.++.+.||..+...|++++|+..+...+.. +...+...+-.++..+..++
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 34444443 67788899999999999999999998888865 34566666666777666654
No 302
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=82.08 E-value=14 Score=27.77 Aligned_cols=95 Identities=9% Similarity=0.030 Sum_probs=54.3
Q ss_pred HHhccCCchHHHhHHHHHHHHHHhCCCCCH-HHHHHHHHHHhcCCCCCCCHHH-------HHHHHHHHHhCC--CHHHHH
Q 020091 72 IAASFTLPQLRAASLVCKSWNDALRPLREA-MVLLRWGKRFKHGRGVRKNLDK-------ALDSFLKGAARG--STLAMV 141 (331)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~a~~~LG~~y~~g~g~~~~~~~-------A~~~~~~A~~~~--~~~a~~ 141 (331)
+...+..||.-.|+++..+......+..++ .....=|.++..--.+..|.+- +++.|.++...- .+..++
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~ 82 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF 82 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence 445678899999988888887776655444 3444446665432222333332 455555555443 445566
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHc
Q 020091 142 DAGLMYWEMDKKEAAISLYRQAAVL 166 (331)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (331)
.||.-+.....+++++.-.++++..
T Consensus 83 ~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 83 ELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 6666655555555555555555544
No 303
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=81.92 E-value=2.5 Score=29.38 Aligned_cols=31 Identities=26% Similarity=0.173 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHH
Q 020091 154 EAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASI 188 (331)
Q Consensus 154 ~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~ 188 (331)
..|+.+..+|++.+ ..+++++|+.+|..+++
T Consensus 4 ~~Ai~~a~~Ave~D----~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 4 RDAVQFARLAVQRD----QEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHHHH----HccCHHHHHHHHHHHHH
Confidence 35666666666654 35666666666666655
No 304
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.73 E-value=23 Score=28.52 Aligned_cols=73 Identities=15% Similarity=0.019 Sum_probs=54.3
Q ss_pred ccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCC
Q 020091 75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDK 152 (331)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~ 152 (331)
.+..++..++..++....-.-| +.+..-..-|.++.. .+++.+|+..|+...+.. .+.+.-.++.|+...+|
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP--~~~e~~~~~~~l~i~----r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRP--EFPELDLFDGWLHIV----RGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCC--CchHHHHHHHHHHHH----hCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 3455677777655544333333 567777778999998 899999999999987664 78888889999988776
Q ss_pred H
Q 020091 153 K 153 (331)
Q Consensus 153 ~ 153 (331)
.
T Consensus 94 ~ 94 (160)
T PF09613_consen 94 P 94 (160)
T ss_pred h
Confidence 4
No 305
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=81.51 E-value=5.2 Score=35.03 Aligned_cols=58 Identities=17% Similarity=0.092 Sum_probs=43.3
Q ss_pred HHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhc
Q 020091 179 AVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSF 240 (331)
Q Consensus 179 A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~ 240 (331)
|..||.+|+. +++...++.||.++.. .+|.-.|+-||-|++-. ..+.|..||..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~----~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASY----QGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHH----TT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhcc----ccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 3455555543 3688999999999987 78899999999999754 667788899988865
No 306
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=81.23 E-value=47 Score=30.95 Aligned_cols=240 Identities=16% Similarity=0.017 Sum_probs=123.6
Q ss_pred cCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHH-HHHHHHH---hcCC
Q 020091 76 FTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAM-VDAGLMY---WEMD 151 (331)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~-~~lg~~~---~~~~ 151 (331)
-..|+-..|..+..+--+.......+.....=+..-.- .||++.|..-|+.-+ ++|+.. ..|--+| .+.|
T Consensus 95 agAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~----eG~~~~Ar~kfeAMl--~dPEtRllGLRgLyleAqr~G 168 (531)
T COG3898 95 AGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALL----EGDYEDARKKFEAML--DDPETRLLGLRGLYLEAQRLG 168 (531)
T ss_pred hccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHh----cCchHHHHHHHHHHh--cChHHHHHhHHHHHHHHHhcc
Confidence 34566666655555544444433344433333333333 788888888887554 455542 1222222 2358
Q ss_pred CHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHC---CCHHHHHHHHHHHhc--CCCCCCCHHHH
Q 020091 152 KKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIA---GHVRAQYQLALCLHR--GRGVDFNLQEA 215 (331)
Q Consensus 152 ~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~y~~--G~g~~~d~~~A 215 (331)
+.+.|++|-+.+....+... ..+|.+.|+++....... +-..+-..-+.++.- +.-+.-|...|
T Consensus 169 areaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~A 248 (531)
T COG3898 169 AREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASA 248 (531)
T ss_pred cHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHH
Confidence 88888888888887765443 566777777776553211 111111111111100 11124456666
Q ss_pred HHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc-CCHHHHHHHHHHHhccCCHHHHHHHHHHHH-
Q 020091 216 ARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-GHGKAQLEHGLGLFTEGEMMKAVVYLELAT- 291 (331)
Q Consensus 216 ~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~- 291 (331)
...-..+.+. +...+-..-+..|+. ..+..++-..++.+=.. .+++. +..|...+--+-++.-++++.
T Consensus 249 r~~A~~a~KL~pdlvPaav~AAralf~----d~~~rKg~~ilE~aWK~ePHP~i----a~lY~~ar~gdta~dRlkRa~~ 320 (531)
T COG3898 249 RDDALEANKLAPDLVPAAVVAARALFR----DGNLRKGSKILETAWKAEPHPDI----ALLYVRARSGDTALDRLKRAKK 320 (531)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHh----ccchhhhhhHHHHHHhcCCChHH----HHHHHHhcCCCcHHHHHHHHHH
Confidence 6666666554 455666666666655 33666666666666444 33332 222333332233344444443
Q ss_pred --HcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCC
Q 020091 292 --RAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 329 (331)
Q Consensus 292 --~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~ 329 (331)
...+.++...+.....-+..++...+....+.+.+..|
T Consensus 321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p 360 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP 360 (531)
T ss_pred HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc
Confidence 23555556666666666666666666555555544433
No 307
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=80.94 E-value=35 Score=38.85 Aligned_cols=68 Identities=13% Similarity=0.216 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPA 170 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~ 170 (331)
.-++.+..++.+.+. .|.++.|..++-.|.+.+-+.+....|..++..||...|+..+++.++..-+.
T Consensus 1668 ~~ge~wLqsAriaR~----aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARL----AGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred hhHHHHHHHHHHHHh----cccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 356788889999988 89999999999999999999999999999999999999999999999764444
No 308
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=80.44 E-value=2.5 Score=39.79 Aligned_cols=85 Identities=24% Similarity=0.131 Sum_probs=64.5
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHH--HHHHHHHhcCCCccccHHHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCHHHHH
Q 020091 209 DFNLQEAARWYLRAAEGGYVRAM--YNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKAQLEHGLGLFTEGEMMKAV 284 (331)
Q Consensus 209 ~~d~~~A~~~~~~A~~~~~~~a~--~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~~~~~~~A~ 284 (331)
..+++.|+..|.+|++.+...|. -+-+..+.. ..++..|+.=+.+|++.. ...+++.-|...+..+.+.+|+
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK----~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK----VESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhhee----echhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHH
Confidence 67899999999999998764442 233344443 558999999999998885 3566677788888899999999
Q ss_pred HHHHHHHHcCCHH
Q 020091 285 VYLELATRAGETA 297 (331)
Q Consensus 285 ~~~~~A~~~~~~~ 297 (331)
.-|+......+.+
T Consensus 93 ~~l~~~~~l~Pnd 105 (476)
T KOG0376|consen 93 LDLEKVKKLAPND 105 (476)
T ss_pred HHHHHhhhcCcCc
Confidence 9999888765443
No 309
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.39 E-value=3.8 Score=25.11 Aligned_cols=29 Identities=31% Similarity=0.349 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 020091 140 MVDAGLMYWEMDKKEAAISLYRQAAVLGD 168 (331)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~ 168 (331)
.++|+..|...||.+.|...++..+..++
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 46789999999999999999999886543
No 310
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.28 E-value=65 Score=31.99 Aligned_cols=68 Identities=12% Similarity=0.185 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHH
Q 020091 118 RKNLDKALDSFLKGAAR--------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEE 178 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~ 178 (331)
.+||..+++||.....- ..+..+.+|+.||....+.++|.++++.|-+.++... .+++-++
T Consensus 367 ~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~ 446 (872)
T KOG4814|consen 367 MEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEE 446 (872)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHH
Confidence 46666666666666532 2344556666666666666666666666665543333 4455555
Q ss_pred HHHHHHH
Q 020091 179 AVKLLYQ 185 (331)
Q Consensus 179 A~~~~~~ 185 (331)
|+.+..+
T Consensus 447 AL~~~~~ 453 (872)
T KOG4814|consen 447 ALTCLQK 453 (872)
T ss_pred HHHHHHH
Confidence 5555444
No 311
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=79.54 E-value=63 Score=31.40 Aligned_cols=47 Identities=13% Similarity=-0.039 Sum_probs=19.0
Q ss_pred cHHHHHHHHHHHHHc-CCHHHH-HHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 247 SHRQARKWMKRAADC-GHGKAQ-LEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 247 ~~~~A~~~~~~a~~~-~~~~a~-~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
|..-|.+.|+..... |+...+ +.....+...++-..+...|++++..
T Consensus 416 D~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 416 DKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred ChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 444444444444433 222222 22223333344444444444444443
No 312
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=79.45 E-value=6.7 Score=26.46 Aligned_cols=21 Identities=14% Similarity=0.075 Sum_probs=15.8
Q ss_pred HHHhccCCHHHHHHHHHHHHH
Q 020091 272 LGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 272 ~~~~~~~~~~~A~~~~~~A~~ 292 (331)
.-+...|++++|+.+|..|++
T Consensus 13 v~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 13 VEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 335668888888888888876
No 313
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=79.01 E-value=2.8 Score=40.55 Aligned_cols=85 Identities=12% Similarity=-0.048 Sum_probs=72.6
Q ss_pred cccHHHHHHHHHHHHHcCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHH
Q 020091 245 PLSHRQARKWMKRAADCGHG---KAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVV 321 (331)
Q Consensus 245 ~~~~~~A~~~~~~a~~~~~~---~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~ 321 (331)
.+|...|..++..|...... ....+|+.++..-+-...|-.++.+++.+.+....+-+...-..+...++..|++-+
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~ 699 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAF 699 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHH
Confidence 34999999999999876443 346789999988888889999999999999988888888888889999999999999
Q ss_pred HhhhcCCC
Q 020091 322 DSWRAMPS 329 (331)
Q Consensus 322 ~~~~~~~~ 329 (331)
+..+...|
T Consensus 700 ~~a~~~~~ 707 (886)
T KOG4507|consen 700 RQALKLTT 707 (886)
T ss_pred HHHHhcCC
Confidence 98876654
No 314
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=78.76 E-value=4 Score=28.48 Aligned_cols=31 Identities=23% Similarity=0.139 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHH
Q 020091 154 EAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASI 188 (331)
Q Consensus 154 ~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~ 188 (331)
..|+.+..+|++.+ ..+++++|+.+|.++++
T Consensus 4 ~~a~~l~~~Ave~D----~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 4 LAAKEVLKRAVELD----QEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHHH----HhccHHHHHHHHHHHHH
Confidence 44555555555544 34555555555555544
No 315
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=78.29 E-value=5.7 Score=27.62 Aligned_cols=20 Identities=30% Similarity=0.316 Sum_probs=15.0
Q ss_pred HhccCCHHHHHHHHHHHHHc
Q 020091 274 LFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 274 ~~~~~~~~~A~~~~~~A~~~ 293 (331)
+...|++++|+.+|..|++.
T Consensus 16 ~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 16 RDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHccCHHHHHHHHHHHHHH
Confidence 55678888888888887763
No 316
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=77.78 E-value=90 Score=32.18 Aligned_cols=93 Identities=16% Similarity=0.151 Sum_probs=65.5
Q ss_pred CChHHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-CHHHHH
Q 020091 63 SLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMV 141 (331)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~ 141 (331)
+.+...+-++..+++.|+.++|..+ .+...... ..+-..+-.|-.+|.. .+..++|+.+|++++... +-+-++
T Consensus 41 n~~~a~vLkaLsl~r~gk~~ea~~~-Le~~~~~~-~~D~~tLq~l~~~y~d----~~~~d~~~~~Ye~~~~~~P~eell~ 114 (932)
T KOG2053|consen 41 NALYAKVLKALSLFRLGKGDEALKL-LEALYGLK-GTDDLTLQFLQNVYRD----LGKLDEAVHLYERANQKYPSEELLY 114 (932)
T ss_pred CcHHHHHHHHHHHHHhcCchhHHHH-HhhhccCC-CCchHHHHHHHHHHHH----HhhhhHHHHHHHHHHhhCCcHHHHH
Confidence 3355566777778899999999733 33333322 2367788889999999 899999999999999874 555666
Q ss_pred HHHHHHhcCCCHH----HHHHHHH
Q 020091 142 DAGLMYWEMDKKE----AAISLYR 161 (331)
Q Consensus 142 ~lg~~~~~~~~~~----~A~~~~~ 161 (331)
.+=++|.+.+++. -|+++|.
T Consensus 115 ~lFmayvR~~~yk~qQkaa~~LyK 138 (932)
T KOG2053|consen 115 HLFMAYVREKSYKKQQKAALQLYK 138 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777765443 3455554
No 317
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=77.70 E-value=23 Score=27.71 Aligned_cols=43 Identities=16% Similarity=-0.041 Sum_probs=34.2
Q ss_pred cCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 020091 261 CGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKN 303 (331)
Q Consensus 261 ~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~ 303 (331)
..++.-...+|..|.+.|+..++-..+.+|++.|-.+|+.+..
T Consensus 117 ~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~kEAC~nIn 159 (161)
T PF09205_consen 117 EINPEFLVKIANAYKKLGNTREANELLKEACEKGLKEACRNIN 159 (161)
T ss_dssp -S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchHHHHHHhc
Confidence 3567778889999999999999999999999999999988764
No 318
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=77.65 E-value=91 Score=32.15 Aligned_cols=77 Identities=18% Similarity=0.071 Sum_probs=45.6
Q ss_pred cHHHHHHHHHHHHHcCC--H---HHHHHHHHHHhccCCHHHHHHHHHHHHHc---C----CHHHHHHHHHHHhhhchhcH
Q 020091 247 SHRQARKWMKRAADCGH--G---KAQLEHGLGLFTEGEMMKAVVYLELATRA---G----ETAADHVKNVILQQLSATSR 314 (331)
Q Consensus 247 ~~~~A~~~~~~a~~~~~--~---~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~---~----~~~a~~~l~~~~~~l~~~~~ 314 (331)
...+|..++........ - -+...|+.+++..||.++|...+...... + +..+......+...+..++.
T Consensus 596 ~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~ 675 (894)
T COG2909 596 AEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDK 675 (894)
T ss_pred hhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCH
Confidence 44555555555433311 1 12247888889999999999888776543 2 13344444555555666776
Q ss_pred HHHHHHHHh
Q 020091 315 DRAMLVVDS 323 (331)
Q Consensus 315 ~~a~~~~~~ 323 (331)
+.+.....+
T Consensus 676 ~~a~~~l~~ 684 (894)
T COG2909 676 ELAAEWLLK 684 (894)
T ss_pred HHHHHHHHh
Confidence 666555544
No 319
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=77.45 E-value=5.1 Score=34.24 Aligned_cols=53 Identities=13% Similarity=0.009 Sum_probs=46.3
Q ss_pred cccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHH
Q 020091 245 PLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA 297 (331)
Q Consensus 245 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~ 297 (331)
..|.+.|.+.|.+++.. .....++.+|....+.|+++.|...|++.++.++.+
T Consensus 8 ~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 8 SGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34899999999999988 456788999999999999999999999999987654
No 320
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=77.15 E-value=9.4 Score=36.09 Aligned_cols=92 Identities=13% Similarity=0.034 Sum_probs=48.8
Q ss_pred CCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHH
Q 020091 118 RKNLDKALDSFLKGAARGS--TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQ 195 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~~--~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~ 195 (331)
.++++.|+..|.+|+++.. +.-.-+-+..+.+.+++..|+.=+.+|++..+ ....++
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP---------------------~~~K~Y 75 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDP---------------------TYIKAY 75 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCc---------------------hhhhee
Confidence 4566666666666666642 22233444555555666666666666655543 244555
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHH
Q 020091 196 YQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNT 234 (331)
Q Consensus 196 ~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~l 234 (331)
+.-|..+.. ...+.+|+.-|++.+.. +++.+.-.+
T Consensus 76 ~rrg~a~m~----l~~~~~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 76 VRRGTAVMA----LGEFKKALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred eeccHHHHh----HHHHHHHHHHHHHhhhcCcCcHHHHHHH
Confidence 555555544 34456666666655432 444444333
No 321
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=76.75 E-value=4.1 Score=27.52 Aligned_cols=13 Identities=46% Similarity=0.532 Sum_probs=5.5
Q ss_pred cCHHHHHHHHHHH
Q 020091 174 ANAEEAVKLLYQA 186 (331)
Q Consensus 174 ~~~~~A~~~~~~a 186 (331)
+++++|+.+|.++
T Consensus 19 g~~~~A~~~Y~~a 31 (69)
T PF04212_consen 19 GNYEEALELYKEA 31 (69)
T ss_dssp TSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 3444444444443
No 322
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.74 E-value=16 Score=36.03 Aligned_cols=82 Identities=10% Similarity=0.018 Sum_probs=59.3
Q ss_pred cccHHHHHHHHHHHHHc--------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHH
Q 020091 245 PLSHRQARKWMKRAADC--------GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDR 316 (331)
Q Consensus 245 ~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~ 316 (331)
.+++..+++||..+..- .....+.+|..||....+.++|.++++.|-+.++-...-.+-..-.-+..+.-++
T Consensus 367 ~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~ 446 (872)
T KOG4814|consen 367 MEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEE 446 (872)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHH
Confidence 56889999999988753 1234567889999999999999999999988775444444444444556667777
Q ss_pred HHHHHHhhhc
Q 020091 317 AMLVVDSWRA 326 (331)
Q Consensus 317 a~~~~~~~~~ 326 (331)
|...+.++++
T Consensus 447 AL~~~~~~~s 456 (872)
T KOG4814|consen 447 ALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHHh
Confidence 8777776654
No 323
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=76.47 E-value=7.6 Score=26.88 Aligned_cols=33 Identities=15% Similarity=0.034 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 248 HRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 248 ~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
..+|+....+|++ ....|++++|+.+|..+++.
T Consensus 3 l~~Ai~lv~~Av~-------------~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 3 LEKAIALVVQAVK-------------KDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHH-------------HHHhccHHHHHHHHHHHHHH
Confidence 4555666665533 44567777777777777663
No 324
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=76.46 E-value=5.1 Score=23.68 Aligned_cols=29 Identities=14% Similarity=-0.062 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 265 KAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 265 ~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
+.+..||.+-...++|++|+.-|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45678899999999999999999998874
No 325
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=75.95 E-value=9.2 Score=26.63 Aligned_cols=19 Identities=26% Similarity=0.308 Sum_probs=13.2
Q ss_pred HhccCCHHHHHHHHHHHHH
Q 020091 274 LFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 274 ~~~~~~~~~A~~~~~~A~~ 292 (331)
+...|++++|+.+|..|++
T Consensus 16 ~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 16 LDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 4556777777777777765
No 326
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=75.51 E-value=15 Score=33.21 Aligned_cols=92 Identities=10% Similarity=-0.008 Sum_probs=70.6
Q ss_pred HHHhccCCchHHHhHHHHHHHHHHhCCCC--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHH
Q 020091 71 KIAASFTLPQLRAASLVCKSWNDALRPLR--EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLM 146 (331)
Q Consensus 71 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~ 146 (331)
....++...++..|...|..-++.-+... ++..+.+-+-+.+. .+||..|+.--.+|.... +..+++.-+.|
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~----l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY----LGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 33456677788888888877776655544 34455566666666 788888888888888775 88999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHc
Q 020091 147 YWEMDKKEAAISLYRQAAVL 166 (331)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~ 166 (331)
+....++.+|..|++.....
T Consensus 163 ~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred HHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999887655
No 327
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=75.48 E-value=28 Score=27.26 Aligned_cols=69 Identities=1% Similarity=-0.048 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG----STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
.....++++.+...-. -..|..+.+..++...... .-+..|.|+.-+++.+++++++.+....++..+.
T Consensus 31 s~~s~f~lAwaLV~S~-~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSR-DTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred hHHHHHHHHHHHHccc-chHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 4567777877775521 1456777899998888643 4567899999999999999999999999987653
No 328
>PF13041 PPR_2: PPR repeat family
Probab=75.46 E-value=11 Score=23.36 Aligned_cols=44 Identities=11% Similarity=0.113 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 020091 264 GKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQ 307 (331)
Q Consensus 264 ~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~ 307 (331)
...+..|=..|.+.|++++|++.|++..+.|-......+..+..
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~ 46 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILIN 46 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34556666778889999999999999988875444444444443
No 329
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=75.06 E-value=7.3 Score=33.33 Aligned_cols=54 Identities=11% Similarity=0.059 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC
Q 020091 118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA 171 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~ 171 (331)
.+|.+-|.+.|.+|+.. .....++.+|....+.|+++.|...|++.++++++..
T Consensus 8 ~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 8 SGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred cCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 67888888888888877 4677788888888888888888888888888876643
No 330
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=75.00 E-value=51 Score=28.89 Aligned_cols=101 Identities=24% Similarity=0.217 Sum_probs=55.5
Q ss_pred CCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHhc----CC--CHHHHHHHHHHHHHc-CCCCC-CccCHHHHHHHHHH
Q 020091 118 RKNLDKALDSFLKGAA----RGSTLAMVDAGLMYWE----MD--KKEAAISLYRQAAVL-GDPAA-QPANAEEAVKLLYQ 185 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~----~~~~~a~~~lg~~~~~----~~--~~~~A~~~~~~a~~~-~~~~~-~~~~~~~A~~~~~~ 185 (331)
.+++++|++.+..++. .+...+-..|+..+.. .+ ..++.+.-+.+.+.. ++... ...=..+|+.|-+.
T Consensus 3 ~kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~ 82 (260)
T PF04190_consen 3 QKKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKF 82 (260)
T ss_dssp TT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHcc
Confidence 4678888888887763 3555555555544433 22 122233333333332 22222 33335667777711
Q ss_pred -HHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 020091 186 -ASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRA 222 (331)
Q Consensus 186 -a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A 222 (331)
.-..|+++-+..+|..|.. .+++.+|..+|-..
T Consensus 83 ~~~~~Gdp~LH~~~a~~~~~----e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 83 GSYKFGDPELHHLLAEKLWK----EGNYYEAERHFLLG 116 (260)
T ss_dssp SS-TT--HHHHHHHHHHHHH----TT-HHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHHHh----hccHHHHHHHHHhc
Confidence 2334899999999999987 67899999888755
No 331
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.97 E-value=81 Score=30.28 Aligned_cols=56 Identities=7% Similarity=-0.066 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCH----HHHHHHHHHHhcCCCHHHHHHHH
Q 020091 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GST----LAMVDAGLMYWEMDKKEAAISLY 160 (331)
Q Consensus 102 ~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~----~a~~~lg~~~~~~~~~~~A~~~~ 160 (331)
.+...|+.+|.+- ...+..|...+++|++. +.| .-++.|+.++.-.+|+.-|++.+
T Consensus 89 ~a~SlLa~lh~~~---~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 89 QAASLLAHLHHQL---AQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELL 150 (629)
T ss_pred HHHHHHHHHHHHh---cCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHH
Confidence 4556677777661 23677777777777764 333 23345666666666666666553
No 332
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=74.57 E-value=5 Score=23.73 Aligned_cols=29 Identities=24% Similarity=0.127 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 020091 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (331)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (331)
+++..||.+-....++++|+.=|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34556677777777777777766666553
No 333
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=73.96 E-value=62 Score=32.80 Aligned_cols=91 Identities=16% Similarity=0.179 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-------------------CccCHHHHHHHHHHHHHC-C--CHH
Q 020091 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-------------------QPANAEEAVKLLYQASIA-G--HVR 193 (331)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-------------------~~~~~~~A~~~~~~a~~~-~--~~~ 193 (331)
+++...+|=.-|....|++.-+.+-+..-.+.+... .++|.++|+.....+++. | .++
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 455556666666666777776666554443321111 789999999999888876 3 356
Q ss_pred HHHHHHHHHhc-----CCCCCCCHHHHHHHHHHHHHCC
Q 020091 194 AQYQLALCLHR-----GRGVDFNLQEAARWYLRAAEGG 226 (331)
Q Consensus 194 a~~~lg~~y~~-----G~g~~~d~~~A~~~~~~A~~~~ 226 (331)
.+...|++|.. +..-....+.|++||++|-+..
T Consensus 280 m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeve 317 (1226)
T KOG4279|consen 280 MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVE 317 (1226)
T ss_pred eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccC
Confidence 67778888864 2222345678999999998753
No 334
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.43 E-value=17 Score=34.89 Aligned_cols=62 Identities=18% Similarity=0.295 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCC
Q 020091 104 LLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---------GSTLAMVDAGLMYWEMDK-KEAAISLYRQAAVLGDP 169 (331)
Q Consensus 104 ~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~---------~~~~a~~~lg~~~~~~~~-~~~A~~~~~~a~~~~~~ 169 (331)
.+.+|.+..+ .+|...|..+|...++. -.|.|+|.||.+|+..+. ..++.+|+.+|-+.+.+
T Consensus 452 ~lL~g~~lR~----Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 452 YLLKGVILRN----LGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 5567899988 88999999999998843 167899999999999876 99999999998877643
No 335
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=73.38 E-value=20 Score=27.43 Aligned_cols=58 Identities=3% Similarity=-0.010 Sum_probs=44.1
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHhC---------C--------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 020091 105 LRWGKRFKHGRGVRKNLDKALDSFLKGAAR---------G--------STLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (331)
Q Consensus 105 ~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~---------~--------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (331)
..+|...+. .+++-.++-+|++|... . .+..+.||+.++...||.+-.++|++-|.+.
T Consensus 5 tllAd~a~~----~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~ 79 (140)
T PF10952_consen 5 TLLADQAFK----EADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEK 79 (140)
T ss_pred HHHHHHHhh----cccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHH
Confidence 346666666 78888888888888643 0 2346789999999999999999999877653
No 336
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=73.35 E-value=83 Score=29.66 Aligned_cols=161 Identities=16% Similarity=0.049 Sum_probs=84.1
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-CCHHHH-------HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccC
Q 020091 104 LLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAM-------VDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPAN 175 (331)
Q Consensus 104 ~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~-------~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 175 (331)
.-.||++++- .+||+.|...|+.+.+- .+-.++ -..|.++..++.... . .-.......-
T Consensus 211 ~R~LAD~aFm----l~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~--------~-k~~~~~~~~~ 277 (414)
T PF12739_consen 211 MRRLADLAFM----LRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSIS--------A-KIRKDEIEPY 277 (414)
T ss_pred HHHHHHHHHH----HccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCc--------c-ccccccHHHH
Confidence 4568999988 89999999999987652 122222 233333333321100 0 0000001223
Q ss_pred HHHHHHHHHHHHHC------CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC------C---CHHHHHHHHHHH--
Q 020091 176 AEEAVKLLYQASIA------GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG------G---YVRAMYNTSLCY-- 238 (331)
Q Consensus 176 ~~~A~~~~~~a~~~------~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~------~---~~~a~~~lg~~y-- 238 (331)
++.|...|.++... .-..+....+.++.. .+.+.+|..++-+.... + .+..+-.++.+|
T Consensus 278 le~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~----~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~ 353 (414)
T PF12739_consen 278 LENAYYTYLKSALPRCSLPYYALRCALLLAELLKS----RGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYAS 353 (414)
T ss_pred HHHHHHHHHhhhccccccccchHHHHHHHHHHHHh----cCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcc
Confidence 44555566663221 122344444455543 45566666555555332 3 444455677777
Q ss_pred hcCCCccc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 239 SFGEGLPL---SHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 239 ~~g~g~~~---~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
........ ...++.-|+-.| |.-|...|....|+.+|.+|...
T Consensus 354 ~~~~~~~~~~~r~RK~af~~vLA------------g~~~~~~~~~~~a~rcy~~a~~v 399 (414)
T PF12739_consen 354 LRSNRPSPGLTRFRKYAFHMVLA------------GHRYSKAGQKKHALRCYKQALQV 399 (414)
T ss_pred cccCCCCccchhhHHHHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHHH
Confidence 44321111 133333333333 45678899999999999999764
No 337
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=73.18 E-value=6.7 Score=27.07 Aligned_cols=31 Identities=32% Similarity=0.327 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHH
Q 020091 154 EAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASI 188 (331)
Q Consensus 154 ~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~ 188 (331)
++|+.++.+|++.+ ..+++++|+.+|.+|++
T Consensus 4 ~~A~~l~~~Av~~D----~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 4 QKAIELVKKAIEED----NAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHH
Confidence 44555555555443 34555555555555544
No 338
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=72.92 E-value=27 Score=35.20 Aligned_cols=21 Identities=10% Similarity=-0.132 Sum_probs=13.1
Q ss_pred ccccHHHHHHHHHHHHHcCCH
Q 020091 244 LPLSHRQARKWMKRAADCGHG 264 (331)
Q Consensus 244 ~~~~~~~A~~~~~~a~~~~~~ 264 (331)
...|+.+|+..-++-.....+
T Consensus 378 LAnd~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 378 LANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred hccCHHHHHHHHHHHhccCCc
Confidence 355788777766666555443
No 339
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=72.91 E-value=6.9 Score=27.11 Aligned_cols=15 Identities=33% Similarity=0.496 Sum_probs=6.5
Q ss_pred cCCCHHHHHHHHHHH
Q 020091 149 EMDKKEAAISLYRQA 163 (331)
Q Consensus 149 ~~~~~~~A~~~~~~a 163 (331)
..|++++|+.+|+++
T Consensus 18 ~~gr~~eAi~~Y~~a 32 (75)
T cd02682 18 KEGNAEDAITNYKKA 32 (75)
T ss_pred hcCCHHHHHHHHHHH
Confidence 344444444444443
No 340
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=71.06 E-value=7.9 Score=26.79 Aligned_cols=32 Identities=34% Similarity=0.255 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHH
Q 020091 153 KEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASI 188 (331)
Q Consensus 153 ~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~ 188 (331)
.++|+.+..+|++.+ ..+++++|+.+|..+++
T Consensus 3 l~~Ai~lv~~Av~~D----~~g~y~eA~~lY~~ale 34 (75)
T cd02684 3 LEKAIALVVQAVKKD----QRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHHHHHH----HhccHHHHHHHHHHHHH
Confidence 345555555555543 34555555555555554
No 341
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=70.21 E-value=10 Score=26.23 Aligned_cols=34 Identities=18% Similarity=0.094 Sum_probs=22.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 247 SHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 247 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
+.++|+.+.++|++. -..|++++|+.+|..|++.
T Consensus 2 ~l~kai~Lv~~A~~e-------------D~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 2 DLERAHFLVTQAFDE-------------DEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred CHHHHHHHHHHHHHh-------------hHhhhHHHHHHHHHHHHHH
Confidence 345666666666443 3467778888888877764
No 342
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=69.38 E-value=21 Score=37.32 Aligned_cols=83 Identities=20% Similarity=0.119 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHhcC---CCccccHHHHHHHHHHHHHc-CCHHHHHHHHHHHhccCCH
Q 020091 210 FNLQEAARWYLRAAEG-----GYVRAMYNTSLCYSFG---EGLPLSHRQARKWMKRAADC-GHGKAQLEHGLGLFTEGEM 280 (331)
Q Consensus 210 ~d~~~A~~~~~~A~~~-----~~~~a~~~lg~~y~~g---~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~~~~~~ 280 (331)
+.|+.|+..|++..+. .--+|++.+|..+... .|-+..+++|+.-|.+.-.. +-+--+..-|.+|...+++
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (932)
T PRK13184 489 KLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALVYQRLGEY 568 (932)
T ss_pred HHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHHHHHhhhH
Q ss_pred HHHHHHHHHHHH
Q 020091 281 MKAVVYLELATR 292 (331)
Q Consensus 281 ~~A~~~~~~A~~ 292 (331)
+|-++.|..|++
T Consensus 569 ~~~~~~~~~~~~ 580 (932)
T PRK13184 569 NEEIKSLLLALK 580 (932)
T ss_pred HHHHHHHHHHHH
No 343
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=68.69 E-value=7.9 Score=26.81 Aligned_cols=16 Identities=19% Similarity=0.322 Sum_probs=10.1
Q ss_pred cCCHHHHHHHHHHHHH
Q 020091 277 EGEMMKAVVYLELATR 292 (331)
Q Consensus 277 ~~~~~~A~~~~~~A~~ 292 (331)
.|++++|+.+|..+++
T Consensus 19 ~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 19 EGDYEAAFEFYRAGVD 34 (75)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 3666666666666665
No 344
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=68.66 E-value=52 Score=26.22 Aligned_cols=73 Identities=10% Similarity=-0.081 Sum_probs=53.2
Q ss_pred ccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCC
Q 020091 75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDK 152 (331)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~ 152 (331)
.+...+..++..+.....-.-|+ .+..-..-|.++.. .+++.+|+..|+...+.+ .+.+.-.++.|+...+|
T Consensus 20 aL~~~d~~D~e~lLdALrvLrP~--~~e~d~~dg~l~i~----rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALRVLRPN--LKELDMFDGWLLIA----RGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCC--ccccchhHHHHHHH----cCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 44466677665555444334343 55666667899988 899999999999998875 47778889999988766
Q ss_pred H
Q 020091 153 K 153 (331)
Q Consensus 153 ~ 153 (331)
.
T Consensus 94 p 94 (153)
T TIGR02561 94 A 94 (153)
T ss_pred h
Confidence 4
No 345
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=68.56 E-value=18 Score=24.91 Aligned_cols=19 Identities=16% Similarity=0.059 Sum_probs=13.2
Q ss_pred HhccCCHHHHHHHHHHHHH
Q 020091 274 LFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 274 ~~~~~~~~~A~~~~~~A~~ 292 (331)
....|++++|+.+|..|++
T Consensus 16 ~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 16 EDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 4456777777777777765
No 346
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=68.04 E-value=8.5 Score=26.66 Aligned_cols=31 Identities=23% Similarity=0.139 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHH
Q 020091 154 EAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASI 188 (331)
Q Consensus 154 ~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~ 188 (331)
.+|+.++.+|++.+ ..+++++|+.+|..+++
T Consensus 4 ~~A~~l~~~Ave~d----~~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 4 EQAAELIRLALEKE----EEGDYEAAFEFYRAGVD 34 (75)
T ss_pred HHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHH
Confidence 44555555555543 23555555555555544
No 347
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=67.68 E-value=11 Score=25.97 Aligned_cols=19 Identities=16% Similarity=0.109 Sum_probs=13.5
Q ss_pred HhccCCHHHHHHHHHHHHH
Q 020091 274 LFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 274 ~~~~~~~~~A~~~~~~A~~ 292 (331)
+...|++++|+.+|..|++
T Consensus 18 ~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 18 ADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 4446777777777777765
No 348
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=67.16 E-value=1.5e+02 Score=34.19 Aligned_cols=138 Identities=10% Similarity=0.001 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHH
Q 020091 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEA 215 (331)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A 215 (331)
..+.+..+|.+-...|.++.|-.+.-+|.+.. -+.+....+..... ++|-..|
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r-----------------------~~~i~~E~AK~lW~----~gd~~~A 1721 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR-----------------------LPEIVLERAKLLWQ----TGDELNA 1721 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-----------------------cchHHHHHHHHHHh----hccHHHH
Confidence 45566777777777777777777777766654 45566666666554 5666666
Q ss_pred HHHHHHHHHCC-------------------CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC--CHHHHHHHHHHH
Q 020091 216 ARWYLRAAEGG-------------------YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKAQLEHGLGL 274 (331)
Q Consensus 216 ~~~~~~A~~~~-------------------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~ 274 (331)
+..+++.++.. ...+...++..... .+ ......-+.+|..+.+.. ..+.++.||..|
T Consensus 1722 l~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~e-s~-n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1722 LSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEE-SG-NFESKDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred HHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHH-hc-chhHHHHHHHHHHHHHHcccccCceeeHHHHH
Confidence 66666665421 11233444443322 11 123445566677666552 345566666544
Q ss_pred hc------------cCCHHH---HHHHHHHHHHcCCHHHHHHH
Q 020091 275 FT------------EGEMMK---AVVYLELATRAGETAADHVK 302 (331)
Q Consensus 275 ~~------------~~~~~~---A~~~~~~A~~~~~~~a~~~l 302 (331)
.+ .|++.. ++.+|.+|+..|+..-...+
T Consensus 1800 ~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyqsm 1842 (2382)
T KOG0890|consen 1800 DKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQHLYQSM 1842 (2382)
T ss_pred HHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchhHHHhh
Confidence 32 445555 77788889888876544433
No 349
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=65.58 E-value=1.1e+02 Score=28.18 Aligned_cols=154 Identities=11% Similarity=-0.022 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHH-HHHH---H-----HHCC-----C---HHHHHHH
Q 020091 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVK-LLYQ---A-----SIAG-----H---VRAQYQL 198 (331)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~-~~~~---a-----~~~~-----~---~~a~~~l 198 (331)
|.+++..++.++...||...|..+.++|+-.- +.+.. .|.. . +... + -.+.+..
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~---------e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~ 109 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAF---------ERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRY 109 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---------HHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHH
Confidence 56778889999999999999999998886320 11100 0100 0 0110 1 1122222
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHH--c-----CCHHHHH
Q 020091 199 ALCLHRGRGVDFNLQEAARWYLRAAEG---GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD--C-----GHGKAQL 268 (331)
Q Consensus 199 g~~y~~G~g~~~d~~~A~~~~~~A~~~---~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~--~-----~~~~a~~ 268 (331)
...+ +..|.+..|.+|.+-.... +|+-+....-..|.-- .+.++-=+..++.... . ..+.-.+
T Consensus 110 i~~L----~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALr---s~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~ 182 (360)
T PF04910_consen 110 IQSL----GRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALR---SRQYQWLIDFSESPLAKCYRNWLSLLPNFAF 182 (360)
T ss_pred HHHH----HhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHh---cCCHHHHHHHHHhHhhhhhhhhhhhCccHHH
Confidence 2222 2367799999999888765 2555544433333221 2244433444443322 1 1234556
Q ss_pred HHHHHHhccCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 020091 269 EHGLGLFTEGEM---------------MKAVVYLELATRAGETAADHVKNVI 305 (331)
Q Consensus 269 ~Lg~~~~~~~~~---------------~~A~~~~~~A~~~~~~~a~~~l~~~ 305 (331)
.++..++..++. ++|-..+++|+..-+.-...++..+
T Consensus 183 S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~Ll~~l 234 (360)
T PF04910_consen 183 SIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPLLDKL 234 (360)
T ss_pred HHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 666666666666 8999999999887666555555444
No 350
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=65.56 E-value=32 Score=32.81 Aligned_cols=93 Identities=22% Similarity=0.195 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC---CCccCHHHHHHHHHHHHHCCCHHHH
Q 020091 119 KNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPA---AQPANAEEAVKLLYQASIAGHVRAQ 195 (331)
Q Consensus 119 ~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~A~~~~~~a~~~~~~~a~ 195 (331)
|+.+.|.+. |-+.+++.-|-.||......|+++-|..+|+++-+...-. ...+|.++-.++-..|...|+....
T Consensus 332 g~L~~A~~~---a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~a 408 (443)
T PF04053_consen 332 GNLDIALEI---AKELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIA 408 (443)
T ss_dssp T-HHHHHHH---CCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHH
T ss_pred CCHHHHHHH---HHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHH
Confidence 555555432 2223355555666666666666666666665543221000 0344444445555555556666666
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHH
Q 020091 196 YQLALCLHRGRGVDFNLQEAARWYLR 221 (331)
Q Consensus 196 ~~lg~~y~~G~g~~~d~~~A~~~~~~ 221 (331)
+.-+.+. +|.++-++.+.+
T Consensus 409 f~~~~~l-------gd~~~cv~lL~~ 427 (443)
T PF04053_consen 409 FQAALLL-------GDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHH-------T-HHHHHHHHHH
T ss_pred HHHHHHc-------CCHHHHHHHHHH
Confidence 5555543 345555555444
No 351
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=64.78 E-value=17 Score=25.46 Aligned_cols=20 Identities=15% Similarity=0.013 Sum_probs=13.6
Q ss_pred HHhccCCHHHHHHHHHHHHH
Q 020091 273 GLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 273 ~~~~~~~~~~A~~~~~~A~~ 292 (331)
.+.+.|+.++|+.+|+++++
T Consensus 17 ~~dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 17 RADEWGDKEQALAHYRKGLR 36 (79)
T ss_pred hhhhcCCHHHHHHHHHHHHH
Confidence 35556777777777777765
No 352
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=64.11 E-value=21 Score=24.46 Aligned_cols=20 Identities=15% Similarity=0.021 Sum_probs=14.3
Q ss_pred HhccCCHHHHHHHHHHHHHc
Q 020091 274 LFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 274 ~~~~~~~~~A~~~~~~A~~~ 293 (331)
....|++++|+.+|..|++.
T Consensus 16 ~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 16 EDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 44467888888888877763
No 353
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.70 E-value=60 Score=29.35 Aligned_cols=62 Identities=19% Similarity=0.233 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH--------hCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGA--------ARG-STLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~--------~~~-~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (331)
+.....|+.+|.. .++++.|...+.-.- +.+ -...+..+|.+|...+|..+|..+-.++.-+
T Consensus 103 ~~irl~LAsiYE~----Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil 173 (399)
T KOG1497|consen 103 ASIRLHLASIYEK----EQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASIL 173 (399)
T ss_pred HHHHHHHHHHHHH----hhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 3467889999999 899999888774221 111 2234678999999999999999988887543
No 354
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=63.41 E-value=1.3e+02 Score=27.91 Aligned_cols=130 Identities=12% Similarity=0.016 Sum_probs=84.6
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC------------------C-------------CH
Q 020091 89 KSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR------------------G-------------ST 137 (331)
Q Consensus 89 ~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~------------------~-------------~~ 137 (331)
..+++..| -|.+++..++.++.+ .||.+.|.++.++|+=. | .-
T Consensus 30 ~~ll~~~P--yHidtLlqls~v~~~----~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~ff 103 (360)
T PF04910_consen 30 INLLQKNP--YHIDTLLQLSEVYRQ----QGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFF 103 (360)
T ss_pred HHHHHHCC--CcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHH
Confidence 34555544 489999999999999 89999999999999511 1 01
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-------------CccCHHHHHHHHHHHHH--C-----CCHHHHHH
Q 020091 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-------------QPANAEEAVKLLYQASI--A-----GHVRAQYQ 197 (331)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-------------~~~~~~~A~~~~~~a~~--~-----~~~~a~~~ 197 (331)
.+.+.....+.+.|-+..|.++.+-...+++... ..+.++--+..++.... . ..|.-.+.
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S 183 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFS 183 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHH
Confidence 2344455555667899999999999998877733 55666655665555332 1 12334455
Q ss_pred HHHHHhc--CC---------CCCCCHHHHHHHHHHHHH
Q 020091 198 LALCLHR--GR---------GVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 198 lg~~y~~--G~---------g~~~d~~~A~~~~~~A~~ 224 (331)
++.++.. .. +...+.++|...+.+|+.
T Consensus 184 ~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~ 221 (360)
T PF04910_consen 184 IALAYFRLEKEESSQSSAQSGRSENSESADEALQKAIL 221 (360)
T ss_pred HHHHHHHhcCccccccccccccccchhHHHHHHHHHHH
Confidence 5555543 11 123345788888888865
No 355
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=62.99 E-value=14 Score=25.38 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=6.8
Q ss_pred CCCHHHHHHHHHHHH
Q 020091 150 MDKKEAAISLYRQAA 164 (331)
Q Consensus 150 ~~~~~~A~~~~~~a~ 164 (331)
.|++++|+.+|.+++
T Consensus 21 ~g~~~eAl~~Y~~a~ 35 (77)
T smart00745 21 AGDYEEALELYKKAI 35 (77)
T ss_pred cCCHHHHHHHHHHHH
Confidence 344444444444443
No 356
>PF12854 PPR_1: PPR repeat
Probab=62.70 E-value=19 Score=20.39 Aligned_cols=27 Identities=11% Similarity=-0.047 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHH
Q 020091 263 HGKAQLEHGLGLFTEGEMMKAVVYLEL 289 (331)
Q Consensus 263 ~~~a~~~Lg~~~~~~~~~~~A~~~~~~ 289 (331)
+...+..|-..|.+.|+.++|++.+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 345566777888899999999998875
No 357
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=62.58 E-value=1.5e+02 Score=28.38 Aligned_cols=91 Identities=18% Similarity=0.135 Sum_probs=44.1
Q ss_pred CCCHHHHHHHHHHHHhC-C-CHHHHHHHHHHHhcCCCHHHHHHH-------HHHHHHcCCCCCCccCHHHHHHHHHHHHH
Q 020091 118 RKNLDKALDSFLKGAAR-G-STLAMVDAGLMYWEMDKKEAAISL-------YRQAAVLGDPAAQPANAEEAVKLLYQASI 188 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~-~-~~~a~~~lg~~~~~~~~~~~A~~~-------~~~a~~~~~~~~~~~~~~~A~~~~~~a~~ 188 (331)
.+|++++.+..+..--. . ..+-...++..+.+.|-.+.|+++ |+-|+++|+ ++.|.+. |-+
T Consensus 274 ~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~-------L~~A~~~---a~~ 343 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGN-------LDIALEI---AKE 343 (443)
T ss_dssp TT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT--------HHHHHHH---CCC
T ss_pred cCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCC-------HHHHHHH---HHh
Confidence 47777776666422211 1 122234555666667777777655 444444432 2222222 112
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 020091 189 AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRA 222 (331)
Q Consensus 189 ~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A 222 (331)
.+++.-|..||..... .+|++-|.++|+++
T Consensus 344 ~~~~~~W~~Lg~~AL~----~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALR----QGNIELAEECYQKA 373 (443)
T ss_dssp CSTHHHHHHHHHHHHH----TTBHHHHHHHHHHC
T ss_pred cCcHHHHHHHHHHHHH----cCCHHHHHHHHHhh
Confidence 3456667777776665 66777777777766
No 358
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=61.16 E-value=1.1e+02 Score=26.37 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=10.9
Q ss_pred CCCHHHHHHHHHHHHhCC
Q 020091 118 RKNLDKALDSFLKGAARG 135 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~ 135 (331)
.||++.|+++...|++.|
T Consensus 96 ~Gd~~~AL~ia~yAI~~~ 113 (230)
T PHA02537 96 IGDFDGALEIAEYALEHG 113 (230)
T ss_pred ccCHHHHHHHHHHHHHcC
Confidence 455666666666666554
No 359
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=60.50 E-value=22 Score=32.93 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=36.0
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC------------HHHHHHHHHHHHHcCCH
Q 020091 245 PLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGE------------MMKAVVYLELATRAGET 296 (331)
Q Consensus 245 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~------------~~~A~~~~~~A~~~~~~ 296 (331)
..-+.+|+.|+++|.....|+.|..+|.++...|| |.+|...+.+|-..++.
T Consensus 331 ~~l~~~Al~yL~kA~d~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~at~G 394 (404)
T PF12753_consen 331 QELIKKALEYLKKAQDEDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKATNG 394 (404)
T ss_dssp HHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHhhccCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhcccc
Confidence 45678999999999999888888888777777663 45666666666555544
No 360
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=60.04 E-value=22 Score=24.92 Aligned_cols=16 Identities=38% Similarity=0.574 Sum_probs=7.7
Q ss_pred cCCCHHHHHHHHHHHH
Q 020091 149 EMDKKEAAISLYRQAA 164 (331)
Q Consensus 149 ~~~~~~~A~~~~~~a~ 164 (331)
..|+.++|+.+|++++
T Consensus 20 E~g~~e~Al~~Y~~gi 35 (79)
T cd02679 20 EWGDKEQALAHYRKGL 35 (79)
T ss_pred hcCCHHHHHHHHHHHH
Confidence 3345555555555443
No 361
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=60.02 E-value=17 Score=24.87 Aligned_cols=14 Identities=43% Similarity=0.444 Sum_probs=5.9
Q ss_pred cCHHHHHHHHHHHH
Q 020091 174 ANAEEAVKLLYQAS 187 (331)
Q Consensus 174 ~~~~~A~~~~~~a~ 187 (331)
+++++|+.+|..|+
T Consensus 20 g~~~~Al~~Y~~a~ 33 (75)
T cd02656 20 GNYEEALELYKEAL 33 (75)
T ss_pred CCHHHHHHHHHHHH
Confidence 34444444444433
No 362
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=59.22 E-value=2e+02 Score=28.75 Aligned_cols=74 Identities=11% Similarity=0.101 Sum_probs=47.1
Q ss_pred hccCCchHHHhHHHHHHHHHHhCCC-------CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH--------HHHhCC-C-
Q 020091 74 ASFTLPQLRAASLVCKSWNDALRPL-------REAMVLLRWGKRFKHGRGVRKNLDKALDSFL--------KGAARG-S- 136 (331)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~--------~A~~~~-~- 136 (331)
..+-.+++..+........+..... -.+...|..|..+.. .|+.+.|..+|. .+...+ .
T Consensus 370 ~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~----~g~l~~A~~~y~~~~~~~~~~~~~~~~~~ 445 (608)
T PF10345_consen 370 CNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQS----TGDLEAALYQYQKPRFLLCEAANRKSKFR 445 (608)
T ss_pred HHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHH----cCCHHHHHHHHhhhHHhhhhhhccCCcch
Confidence 3455677766655555444433222 247788888888887 899999999997 444443 2
Q ss_pred ---HHHHHHHHHHHhcCC
Q 020091 137 ---TLAMVDAGLMYWEMD 151 (331)
Q Consensus 137 ---~~a~~~lg~~~~~~~ 151 (331)
.-+..|+..++...+
T Consensus 446 El~ila~LNl~~I~~~~~ 463 (608)
T PF10345_consen 446 ELYILAALNLAIILQYES 463 (608)
T ss_pred HHHHHHHHHHHHHhHhhc
Confidence 235567777776653
No 363
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.52 E-value=1.8e+02 Score=29.91 Aligned_cols=140 Identities=13% Similarity=0.168 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC----------CHHHHHHHHH---------------------HHhcC
Q 020091 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG----------STLAMVDAGL---------------------MYWEM 150 (331)
Q Consensus 102 ~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~----------~~~a~~~lg~---------------------~~~~~ 150 (331)
..+...|..++. +||++.|..+|-+++..= ++.-..+|.. ||.+.
T Consensus 369 ~i~~kYgd~Ly~----Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKl 444 (933)
T KOG2114|consen 369 EIHRKYGDYLYG----KGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKL 444 (933)
T ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHh
Confidence 345556766666 899999999999998542 2222333333 33333
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-CccCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 020091 151 DKKEAAISLYRQAAVLGDPAA-QPANAEEAVKLLYQASIAG--------HVRAQYQLALCLHRGRGVDFNLQEAARWYLR 221 (331)
Q Consensus 151 ~~~~~A~~~~~~a~~~~~~~~-~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~ 221 (331)
+|.++=.++..+ .+ .+ ..-|.+.|++.++++-=.. ...--..|-.++.. .+|+++|++|+..
T Consensus 445 kd~~kL~efI~~----~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~ille~----~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 445 KDVEKLTEFISK----CD-KGEWFFDVETALEILRKSNYLDEAELLATKFKKHEWVLDILLED----LHNYEEALRYISS 515 (933)
T ss_pred cchHHHHHHHhc----CC-CcceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHHHHH----hcCHHHHHHHHhc
Confidence 333333332222 22 11 2347888888877751110 01111122333443 6789999999886
Q ss_pred HHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHH
Q 020091 222 AAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAA 259 (331)
Q Consensus 222 A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~ 259 (331)
.-=..-..-....|.++. .++.++-...+.+-+
T Consensus 516 lp~~e~l~~l~kyGk~Ll-----~h~P~~t~~ili~~~ 548 (933)
T KOG2114|consen 516 LPISELLRTLNKYGKILL-----EHDPEETMKILIELI 548 (933)
T ss_pred CCHHHHHHHHHHHHHHHH-----hhChHHHHHHHHHHH
Confidence 522122233344555553 234455555555444
No 364
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=58.47 E-value=1.4e+02 Score=26.80 Aligned_cols=93 Identities=13% Similarity=0.138 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----C----CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc-
Q 020091 191 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----G----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC- 261 (331)
Q Consensus 191 ~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~- 261 (331)
-.+|+.|+|..|.+ ..|.+.+.+|..+.... | -...-..||.+|....-| .+-++...-.++.
T Consensus 114 ~~ea~~n~aeyY~q----i~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV----~e~lE~~~~~iEkG 185 (412)
T COG5187 114 GSEADRNIAEYYCQ----IMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVV----EESLEVADDIIEKG 185 (412)
T ss_pred HHHHHHHHHHHHHH----HhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHH----HHHHHHHHHHHHhC
Confidence 47889999999987 78899999998887542 2 233445788888542222 3333333333333
Q ss_pred CCHHHHHH----HHHHHhccCCHHHHHHHHHHHH
Q 020091 262 GHGKAQLE----HGLGLFTEGEMMKAVVYLELAT 291 (331)
Q Consensus 262 ~~~~a~~~----Lg~~~~~~~~~~~A~~~~~~A~ 291 (331)
|+++-.+. -|...+..++|.+|...+...+
T Consensus 186 gDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 186 GDWERRNRYKVYKGIFKMMRRNFKEAAILLSDIL 219 (412)
T ss_pred CCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 66665543 3555566778888888776554
No 365
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=58.13 E-value=66 Score=31.37 Aligned_cols=72 Identities=15% Similarity=0.109 Sum_probs=49.1
Q ss_pred HHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 020091 93 DALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (331)
Q Consensus 93 ~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (331)
....-...|.|+-+||.+-.-- -..+-..+.+.|.+|+.. .|..-+..+|-.|++.+++.+|+..+-.|++
T Consensus 269 d~ghl~~YPmALg~LadLeEi~--pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 269 DMGHLARYPMALGNLADLEEID--PTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp HTTTTTT-HHHHHHHHHHHHHS----TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hcCchhhCchhhhhhHhHHhhc--cCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 3333345789999999887531 134456789999999864 2555667788889999999999999999876
Q ss_pred c
Q 020091 166 L 166 (331)
Q Consensus 166 ~ 166 (331)
.
T Consensus 347 V 347 (618)
T PF05053_consen 347 V 347 (618)
T ss_dssp H
T ss_pred H
Confidence 4
No 366
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=57.49 E-value=76 Score=28.81 Aligned_cols=58 Identities=22% Similarity=0.323 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH----hCC----CHHHHHHHHHHHhcC----CCHHHHHHHHHH
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGA----ARG----STLAMVDAGLMYWEM----DKKEAAISLYRQ 162 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~----~~~----~~~a~~~lg~~~~~~----~~~~~A~~~~~~ 162 (331)
.+++.+.+..|.+ -+|-+.|++++++-- ..| ..-....||.+|... ...++|..++++
T Consensus 104 ~ea~~~kaeYycq----igDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~ 173 (393)
T KOG0687|consen 104 REAMLRKAEYYCQ----IGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEE 173 (393)
T ss_pred HHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Confidence 5688889999988 899999998887654 344 334566888888665 344444444443
No 367
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.04 E-value=2.7e+02 Score=29.72 Aligned_cols=102 Identities=11% Similarity=0.069 Sum_probs=56.8
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-------CccCHHHH
Q 020091 107 WGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-------QPANAEEA 179 (331)
Q Consensus 107 LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-------~~~~~~~A 179 (331)
+|.+... .+-+++|+..|++--- +..|.. .+...-++.+.|.++-++.-+ ...++ ..+...+|
T Consensus 1054 ia~iai~----~~LyEEAF~ifkkf~~--n~~A~~---VLie~i~~ldRA~efAe~~n~-p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1054 IAEIAIE----NQLYEEAFAIFKKFDM--NVSAIQ---VLIENIGSLDRAYEFAERCNE-PAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred HHHHHhh----hhHHHHHHHHHHHhcc--cHHHHH---HHHHHhhhHHHHHHHHHhhCC-hHHHHHHHHHHHhcCchHHH
Confidence 3445544 5668889888876432 222221 222334556666665544311 00000 45566777
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 180 VKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 180 ~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
++-|-+| ++|..+.+.-..-.+ .+.|++=++|+.-|-..
T Consensus 1124 ieSyika---dDps~y~eVi~~a~~----~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1124 IESYIKA---DDPSNYLEVIDVASR----TGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred HHHHHhc---CCcHHHHHHHHHHHh----cCcHHHHHHHHHHHHHh
Confidence 7777654 456666666555554 56788888888877543
No 368
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=56.81 E-value=83 Score=24.23 Aligned_cols=73 Identities=15% Similarity=0.041 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 020091 140 MVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA--QPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAAR 217 (331)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~ 217 (331)
+..+|......++.-.++-.|++|+....... ...+.++-+. -...++.||+..++. .+|.+-.++
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~--------i~VisCHNLA~FWR~----~gd~~yELk 71 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLT--------ISVISCHNLADFWRS----QGDSDYELK 71 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHH--------HHHHHHhhHHHHHHH----cCChHHHHH
Confidence 35678888888899999999999876522111 1111111111 134567889999886 788888889
Q ss_pred HHHHHHH
Q 020091 218 WYLRAAE 224 (331)
Q Consensus 218 ~~~~A~~ 224 (331)
|++-|-+
T Consensus 72 YLqlASE 78 (140)
T PF10952_consen 72 YLQLASE 78 (140)
T ss_pred HHHHHHH
Confidence 8888865
No 369
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=56.62 E-value=23 Score=18.73 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=18.6
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcC
Q 020091 268 LEHGLGLFTEGEMMKAVVYLELATRAG 294 (331)
Q Consensus 268 ~~Lg~~~~~~~~~~~A~~~~~~A~~~~ 294 (331)
..+=..|...|++++|...|++-.+.|
T Consensus 4 ~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 4 NSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred HHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 345556777888888888887766543
No 370
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.71 E-value=2.1e+02 Score=27.92 Aligned_cols=60 Identities=17% Similarity=-0.003 Sum_probs=49.2
Q ss_pred HHHHHHHHhcCCCccccHHHHHHHHHHHHHc---------CCHHHHHHHHHHHhccCC-HHHHHHHHHHHHHcC
Q 020091 231 MYNTSLCYSFGEGLPLSHRQARKWMKRAADC---------GHGKAQLEHGLGLFTEGE-MMKAVVYLELATRAG 294 (331)
Q Consensus 231 ~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---------~~~~a~~~Lg~~~~~~~~-~~~A~~~~~~A~~~~ 294 (331)
..-+|.++.+ .++...|..+|...++. -.|-|+|.||..|.+++. +.++..|+.+|-+.+
T Consensus 452 ~lL~g~~lR~----Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 452 YLLKGVILRN----LGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 4567777755 33999999999998743 237899999999999888 999999999998765
No 371
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=54.55 E-value=90 Score=23.44 Aligned_cols=90 Identities=20% Similarity=0.156 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHHHHHhC-C-CH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHC--C
Q 020091 118 RKNLDKALDSFLKGAAR-G-ST---LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIA--G 190 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~-~-~~---~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~--~ 190 (331)
.||.-+|++..+..+.. | +. ..+..-|.++. +.|....++.....-.--++.+|.++... .
T Consensus 9 rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~------------~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~ 76 (111)
T PF04781_consen 9 RGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFY------------KLAKKTENPDVKFRYLLGSVECFSRAVELSPD 76 (111)
T ss_pred ccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHH------------HHHHhccCchHHHHHHHHhHHHHHHHhccChh
Confidence 68888999998887753 2 22 22333444443 33333333333333334455556665543 3
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 020091 191 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAA 223 (331)
Q Consensus 191 ~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~ 223 (331)
.+..++.||.-+.. ...|.+++.--++++
T Consensus 77 ~A~~L~~la~~l~s----~~~Ykk~v~kak~~L 105 (111)
T PF04781_consen 77 SAHSLFELASQLGS----VKYYKKAVKKAKRGL 105 (111)
T ss_pred HHHHHHHHHHHhhh----HHHHHHHHHHHHHHh
Confidence 35556666665432 233555555444443
No 372
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=54.01 E-value=18 Score=33.52 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhcCC
Q 020091 121 LDKALDSFLKGAARGSTLAMVDAGLMYWEMD 151 (331)
Q Consensus 121 ~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~ 151 (331)
..+|+.|+++|.....|+.|.++|.++...|
T Consensus 334 ~~~Al~yL~kA~d~ddPetWv~vAEa~I~LG 364 (404)
T PF12753_consen 334 IKKALEYLKKAQDEDDPETWVDVAEAMIDLG 364 (404)
T ss_dssp HHHHHHHHHHHHHS--TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCChhHHHHHHHHHhhhh
Confidence 6679999999999888877777666665543
No 373
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=52.70 E-value=81 Score=29.31 Aligned_cols=79 Identities=14% Similarity=0.052 Sum_probs=48.5
Q ss_pred HHHHHHHHhCCCHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Q 020091 125 LDSFLKGAARGSTL-AMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLH 203 (331)
Q Consensus 125 ~~~~~~A~~~~~~~-a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~ 203 (331)
+..|.+....++.. ++|.||.++.-|.|.=--..-+-+.+..+...+...-...|+..|+-.-..|.|++-..|+.|..
T Consensus 383 ISA~HKSmRG~D~nAslY~LaRMLegGEdPLYVARRlvR~ASEDIGlaD~S~L~~Avaa~qav~~vGmPE~dviLAqC~v 462 (554)
T KOG2028|consen 383 ISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQAVHFVGMPECDVILAQCVV 462 (554)
T ss_pred HHHHHHhhcCCccchHHHHHHHHHccCCCcHHHHHHHHHHhhcccCcCCchhhHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 33444455555444 36777777766655433322233333333334466678888888888888888888888887754
No 374
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=51.58 E-value=1.8e+02 Score=27.01 Aligned_cols=65 Identities=15% Similarity=0.036 Sum_probs=46.1
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR 134 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~ 134 (331)
.+..+...++.+++..|..++..+.+..++...-..+..|...|.. + -.-|+.+|.+++++....
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~-W-D~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDA-W-DRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHH-H-HccCHHHHHHHHHHHHHH
Confidence 3567778999999999999998888874433233455555555542 0 167899999999987764
No 375
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=50.75 E-value=1.6e+02 Score=25.28 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=17.1
Q ss_pred ccCCHHHHHHHHHHHHHcCC
Q 020091 276 TEGEMMKAVVYLELATRAGE 295 (331)
Q Consensus 276 ~~~~~~~A~~~~~~A~~~~~ 295 (331)
+.++...|+.++++|...++
T Consensus 190 d~~~l~~Al~~L~rA~~l~~ 209 (230)
T PHA02537 190 DAETLQLALALLQRAFQLND 209 (230)
T ss_pred CcccHHHHHHHHHHHHHhCC
Confidence 56688999999999998765
No 376
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=49.54 E-value=1.7e+02 Score=25.18 Aligned_cols=47 Identities=15% Similarity=0.070 Sum_probs=30.4
Q ss_pred cHHHHHHHHHHHHHc-----C--CH---HHHHHHHHHHhc-cCCHHHHHHHHHHHHHc
Q 020091 247 SHRQARKWMKRAADC-----G--HG---KAQLEHGLGLFT-EGEMMKAVVYLELATRA 293 (331)
Q Consensus 247 ~~~~A~~~~~~a~~~-----~--~~---~a~~~Lg~~~~~-~~~~~~A~~~~~~A~~~ 293 (331)
-.++|...|++|.+. . +| .-..+.+.+|+. .++.++|+...+.|.+.
T Consensus 141 ~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 141 AAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 346788888887653 1 22 223456666644 89999999998888753
No 377
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.28 E-value=2.3e+02 Score=29.22 Aligned_cols=32 Identities=13% Similarity=0.085 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
..+...|..++..||+++|..+|.+++..-.+
T Consensus 369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~ 400 (933)
T KOG2114|consen 369 EIHRKYGDYLYGKGDFDEATDQYIETIGFLEP 400 (933)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh
Confidence 34566788888899999999999999876443
No 378
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=49.12 E-value=60 Score=26.75 Aligned_cols=51 Identities=20% Similarity=0.136 Sum_probs=39.0
Q ss_pred cccHHHHHHHHHHHHHc-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 020091 245 PLSHRQARKWMKRAADC-GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE 295 (331)
Q Consensus 245 ~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~ 295 (331)
....+...+|.++.+.. .++..+.+++.++...|+.++|..+.+++...-+
T Consensus 124 ~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 124 PEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34455566666666655 6788888899999999999999999998887655
No 379
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=48.94 E-value=92 Score=23.34 Aligned_cols=79 Identities=19% Similarity=0.224 Sum_probs=48.6
Q ss_pred hHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHH
Q 020091 80 QLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISL 159 (331)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~ 159 (331)
..++|..++ .|++...+.....++..+-.+.. +|+|+.| +........|+-.-.++.+-.+.|-.+++..|
T Consensus 21 cH~EA~tIa-~wL~~~~~~~E~v~lIr~~sLmN-----rG~Yq~A---Ll~~~~~~~pdL~p~~AL~a~klGL~~~~e~~ 91 (116)
T PF09477_consen 21 CHQEANTIA-DWLEQEGEMEEVVALIRLSSLMN-----RGDYQEA---LLLPQCHCYPDLEPWAALCAWKLGLASALESR 91 (116)
T ss_dssp -HHHHHHHH-HHHHHTTTTHHHHHHHHHHHHHH-----TT-HHHH---HHHHTTS--GGGHHHHHHHHHHCT-HHHHHHH
T ss_pred HHHHHHHHH-HHHHhCCcHHHHHHHHHHHHHHh-----hHHHHHH---HHhcccCCCccHHHHHHHHHHhhccHHHHHHH
Confidence 445665554 67877665445555555544444 4889988 55555566777777788888888888888888
Q ss_pred HHHHHHcC
Q 020091 160 YRQAAVLG 167 (331)
Q Consensus 160 ~~~a~~~~ 167 (331)
+.+....+
T Consensus 92 l~rla~~g 99 (116)
T PF09477_consen 92 LTRLASSG 99 (116)
T ss_dssp HHHHCT-S
T ss_pred HHHHHhCC
Confidence 87655443
No 380
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=48.46 E-value=1.1e+02 Score=27.26 Aligned_cols=93 Identities=15% Similarity=0.033 Sum_probs=71.6
Q ss_pred HHHHHHhcCC-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC--CHHHHHHHHHH
Q 020091 197 QLALCLHRGR-GVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKAQLEHGLG 273 (331)
Q Consensus 197 ~lg~~y~~G~-g~~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~ 273 (331)
..|..+..|. .....+..=+.-.+++.+.....++..+...+.. .++++.+...+++-+... +..++..|=..
T Consensus 121 ~~~~~~~~g~~~~d~~f~~WV~~~R~~l~e~~~~~l~~lae~~~~----~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~ 196 (280)
T COG3629 121 QAGELLSEGPVLGDDRFDEWVLEQRRALEELFIKALTKLAEALIA----CGRADAVIEHLERLIELDPYDEPAYLRLMEA 196 (280)
T ss_pred HHHHHhhcCCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 3444444343 1234478888888888888999999999999976 348899999999988774 46777777778
Q ss_pred HhccCCHHHHHHHHHHHHHc
Q 020091 274 LFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 274 ~~~~~~~~~A~~~~~~A~~~ 293 (331)
|+..|+...|+..|++....
T Consensus 197 y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 197 YLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHcCCchHHHHHHHHHHHH
Confidence 99999999999999988663
No 381
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=48.27 E-value=2.6e+02 Score=26.85 Aligned_cols=45 Identities=16% Similarity=0.085 Sum_probs=34.6
Q ss_pred cHHHHHHHHHHHHHc-CCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 020091 247 SHRQARKWMKRAADC-GHGKAQLEHGLGLFTEGEMMKAVVYLELAT 291 (331)
Q Consensus 247 ~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~ 291 (331)
++.++..+-.-..+. ..+.++.-||.+++..+++++|+.++...-
T Consensus 477 ey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 477 EYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred cHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 666666554444444 478889999999999999999999998764
No 382
>PRK10941 hypothetical protein; Provisional
Probab=47.75 E-value=63 Score=28.52 Aligned_cols=61 Identities=8% Similarity=-0.145 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 020091 230 AMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 294 (331)
Q Consensus 230 a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~ 294 (331)
-+.+|-.+|.. .++++.|+.+.+..+... ++.-...-|.+|...|.+..|..-++.-++.-
T Consensus 183 ml~nLK~~~~~----~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALME----EKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHH----cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 35677777766 669999999999988774 44445568999999999999999888888764
No 383
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=47.74 E-value=1.3e+02 Score=23.10 Aligned_cols=78 Identities=10% Similarity=0.006 Sum_probs=45.7
Q ss_pred HHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--C--CHHHHHHHHHHHhcCCCHHHH
Q 020091 81 LRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--G--STLAMVDAGLMYWEMDKKEAA 156 (331)
Q Consensus 81 ~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~--~~~a~~~lg~~~~~~~~~~~A 156 (331)
+...+.-|...++......|-.-+..+=..|.. .-+ .+.+.|...... | .+..+..-|.++...|++++|
T Consensus 45 L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~----~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A 118 (126)
T PF08311_consen 45 LLELLERCIRKFKDDERYKNDERYLKIWIKYAD----LSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKA 118 (126)
T ss_dssp HHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT----TBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH----Hcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHH
Confidence 334444444444333333333334445455544 122 666666655543 3 677778888999999999999
Q ss_pred HHHHHHHH
Q 020091 157 ISLYRQAA 164 (331)
Q Consensus 157 ~~~~~~a~ 164 (331)
...|++++
T Consensus 119 ~~I~~~Gi 126 (126)
T PF08311_consen 119 DEIYQLGI 126 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhC
Confidence 99998864
No 384
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=47.61 E-value=2.5e+02 Score=26.61 Aligned_cols=32 Identities=16% Similarity=0.101 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC
Q 020091 140 MVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA 171 (331)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~ 171 (331)
.-.|..||...++.+-|+..-.+++.++|...
T Consensus 231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 34688899999999999999999988877643
No 385
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=47.45 E-value=45 Score=17.89 Aligned_cols=27 Identities=19% Similarity=0.142 Sum_probs=19.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcC
Q 020091 268 LEHGLGLFTEGEMMKAVVYLELATRAG 294 (331)
Q Consensus 268 ~~Lg~~~~~~~~~~~A~~~~~~A~~~~ 294 (331)
..+=..|...|++++|...|.+..+.|
T Consensus 4 n~li~~~~~~~~~~~a~~~~~~M~~~g 30 (35)
T TIGR00756 4 NTLIDGLCKAGRVEEALELFKEMLERG 30 (35)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 344455777888888888888776554
No 386
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=46.57 E-value=3.8e+02 Score=29.15 Aligned_cols=136 Identities=15% Similarity=0.077 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHH
Q 020091 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEA 215 (331)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A 215 (331)
....+..|+.++...++.++|+.+-.+++-+........-++ ...++.+|+..... .++...|
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~-------------t~~~y~nlal~~f~----~~~~~~a 1034 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN-------------TKLAYGNLALYEFA----VKNLSGA 1034 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH-------------HHHHhhHHHHHHHh----ccCccch
Confidence 345667899999999999999999888876532211111111 22334455543332 3366667
Q ss_pred HHHHHHHHHC-----C--C---HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc-----CC-----HHHHHHHHHHHh
Q 020091 216 ARWYLRAAEG-----G--Y---VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-----GH-----GKAQLEHGLGLF 275 (331)
Q Consensus 216 ~~~~~~A~~~-----~--~---~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~-----~~a~~~Lg~~~~ 275 (331)
...+.++... | + +..-.+++.++ .|. ..++.|+++.+.|... |. ...+..++..+.
T Consensus 1035 l~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~-~~v---~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~ 1110 (1236)
T KOG1839|consen 1035 LKSLNRALKLKLLSSGEDHPPTALSFINLELLL-LGV---EEADTALRYLESALAKNKKVLGPKELETALSYHALARLFE 1110 (1236)
T ss_pred hhhHHHHHHhhccccCCCCCchhhhhhHHHHHH-hhH---HHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHh
Confidence 7777776542 1 2 23346777776 443 3889999999988653 21 233455677777
Q ss_pred ccCCHHHHHHHHHHHHH
Q 020091 276 TEGEMMKAVVYLELATR 292 (331)
Q Consensus 276 ~~~~~~~A~~~~~~A~~ 292 (331)
..+++..|....+....
T Consensus 1111 s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1111 SMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred hhHHHHHHHHHHhhHHH
Confidence 78888877777665543
No 387
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=46.33 E-value=86 Score=29.85 Aligned_cols=54 Identities=13% Similarity=0.179 Sum_probs=33.4
Q ss_pred HHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 020091 72 IAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGA 132 (331)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~ 132 (331)
+--++..|+++.+. .+..|+.+.+. .+.++..+|.+... .++|.+|-.++...-
T Consensus 469 AEyLysqgey~kc~-~ys~WL~~iaP--S~~~~RLlGl~l~e----~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 469 AEYLYSQGEYHKCY-LYSSWLTKIAP--SPQAYRLLGLCLME----NKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHhcccHHHHH-HHHHHHHHhCC--cHHHHHHHHHHHHH----HhhHHHHHHHHHhCC
Confidence 33356667777664 33456555543 56777777777766 677777777776543
No 388
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=44.32 E-value=1.5e+02 Score=25.64 Aligned_cols=25 Identities=36% Similarity=0.363 Sum_probs=18.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHH
Q 020091 268 LEHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 268 ~~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
..+|..|+..|++++|..+|+.++.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~ 206 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAAS 206 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5677777778888888888887753
No 389
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=43.49 E-value=1.2e+02 Score=27.44 Aligned_cols=41 Identities=29% Similarity=0.246 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Q 020091 153 KEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLH 203 (331)
Q Consensus 153 ~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~ 203 (331)
.++||.+-.+|++.+ ..++|++|+.+|+.|++ ++.++.-|+
T Consensus 7 l~kaI~lv~kA~~eD----~a~nY~eA~~lY~~ale------YF~~~lKYE 47 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDED----NAKNYEEALRLYQNALE------YFLHALKYE 47 (439)
T ss_pred HHHHHHHHHHHhhhc----chhchHHHHHHHHHHHH------HHHHHHHhh
Confidence 466777777777665 35677777777776655 355555555
No 390
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=43.16 E-value=90 Score=25.68 Aligned_cols=50 Identities=14% Similarity=-0.020 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHhC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 020091 119 KNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGD 168 (331)
Q Consensus 119 ~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~ 168 (331)
...+..+++.++.+.. .++..+.+++.++...|+.++|..+..++...-+
T Consensus 125 ~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 125 EMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3344455666666654 4899999999999999999999999999988765
No 391
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=41.91 E-value=1.1e+02 Score=26.43 Aligned_cols=57 Identities=16% Similarity=0.081 Sum_probs=41.9
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----C----CHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 020091 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G----STLAMVDAGLMYWEMDKKEAAISLYRQA 163 (331)
Q Consensus 103 a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~----~~~a~~~lg~~~~~~~~~~~A~~~~~~a 163 (331)
....+|..|+. .+|+++|..+|+.++.. | ....+..|-.|+...|+.++.+.+.-+.
T Consensus 180 l~~~~A~ey~~----~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 180 LSLEMAEEYFR----LGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45678888888 89999999999988643 2 3345567777888888887777665443
No 392
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.84 E-value=86 Score=23.14 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 020091 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (331)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (331)
|..+..||.+|.+.|+.+.|+.-|+.-..
T Consensus 72 PG~HAhLGlLys~~G~~e~a~~eFetEKa 100 (121)
T COG4259 72 PGYHAHLGLLYSNSGKDEQAVREFETEKA 100 (121)
T ss_pred CcHHHHHHHHHhhcCChHHHHHHHHHhhh
Confidence 34455566666666666666665554433
No 393
>PRK14700 recombination factor protein RarA; Provisional
Probab=40.40 E-value=2.8e+02 Score=24.97 Aligned_cols=27 Identities=15% Similarity=0.023 Sum_probs=12.2
Q ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 020091 174 ANAEEAVKLLYQASIAGHVRAQYQLAL 200 (331)
Q Consensus 174 ~~~~~A~~~~~~a~~~~~~~a~~~lg~ 200 (331)
.-...|...++-+-..|.|++...|+.
T Consensus 180 ~al~~a~aa~~A~~~iG~PEa~i~La~ 206 (300)
T PRK14700 180 QALRVAMDAWNAYEKLGMPEGRLVLAQ 206 (300)
T ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 334444444444444455555544443
No 394
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=38.93 E-value=34 Score=19.76 Aligned_cols=9 Identities=33% Similarity=0.516 Sum_probs=3.7
Q ss_pred HHHHHHHHh
Q 020091 267 QLEHGLGLF 275 (331)
Q Consensus 267 ~~~Lg~~~~ 275 (331)
.|++|+++.
T Consensus 4 ~FnyAw~Lv 12 (35)
T PF14852_consen 4 QFNYAWGLV 12 (35)
T ss_dssp HHHHHHHHH
T ss_pred hhHHHHHHh
Confidence 344444443
No 395
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=38.79 E-value=4.4e+02 Score=26.89 Aligned_cols=58 Identities=10% Similarity=0.115 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-C-----------------------CHHHHHHHHHHHhcCCCHHHH
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-G-----------------------STLAMVDAGLMYWEMDKKEAA 156 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-~-----------------------~~~a~~~lg~~~~~~~~~~~A 156 (331)
-.|+.++|..+.. ...++.|.+||.+.-.. + +..-+-.+|.++..-|-.++|
T Consensus 796 e~A~r~ig~~fa~----~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qA 871 (1189)
T KOG2041|consen 796 EDAFRNIGETFAE----MMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQA 871 (1189)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHH
Confidence 3466666766666 56677788887765332 1 222233456666666777777
Q ss_pred HHHHHH
Q 020091 157 ISLYRQ 162 (331)
Q Consensus 157 ~~~~~~ 162 (331)
++.|.+
T Consensus 872 V~a~Lr 877 (1189)
T KOG2041|consen 872 VEAYLR 877 (1189)
T ss_pred HHHHHh
Confidence 777755
No 396
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=37.84 E-value=2.8e+02 Score=24.92 Aligned_cols=68 Identities=10% Similarity=0.114 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh----CC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA----RG----STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA 171 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~----~~----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~ 171 (331)
-++++.++|..|.+ -.|.+.+++|..+... .| .--....||.+|....=.++.++...-.++.|-++.
T Consensus 114 ~~ea~~n~aeyY~q----i~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWe 189 (412)
T COG5187 114 GSEADRNIAEYYCQ----IMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWE 189 (412)
T ss_pred HHHHHHHHHHHHHH----HhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHH
Confidence 46789999999999 8899999988876543 34 223445788888666555555555555555554443
No 397
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=36.40 E-value=1.4e+02 Score=29.24 Aligned_cols=27 Identities=11% Similarity=-0.068 Sum_probs=15.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 020091 266 AQLEHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 266 a~~~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
-+..+|-+|+..+++.+|+..+..|++
T Consensus 320 PYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 320 PYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666654
No 398
>PRK10941 hypothetical protein; Provisional
Probab=36.19 E-value=2.4e+02 Score=24.88 Aligned_cols=62 Identities=18% Similarity=0.128 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 020091 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGD 168 (331)
Q Consensus 103 a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~ 168 (331)
-+.+|=.+|.+ .+++++|...-+..+... ++.-....|.+|.+.+.+..|..=++.-++..|
T Consensus 183 ml~nLK~~~~~----~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 183 LLDTLKAALME----EKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHHH----cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 35566677777 899999999999988774 888888999999999999999998888887765
No 399
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=36.01 E-value=4.8e+02 Score=26.42 Aligned_cols=169 Identities=14% Similarity=0.129 Sum_probs=85.1
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHhCC------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCCCC----
Q 020091 106 RWGKRFKHGRGVRKNLDKALDSFLKGAARG------STLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GDPAA---- 171 (331)
Q Consensus 106 ~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~~---- 171 (331)
.++.++.. .+.+.+|...|++.-..+ .-.-++.++.-+...|+.++-..+.++-++- ..|.+
T Consensus 637 LlA~~~Ay----~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEm 712 (1081)
T KOG1538|consen 637 LLADVFAY----QGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEM 712 (1081)
T ss_pred HHHHHHHh----hhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHH
Confidence 35655555 688999999988643222 2233556677777777777777777765542 11111
Q ss_pred --CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHH----------CCCHHHHHHHHHHH
Q 020091 172 --QPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFN-LQEAARWYLRAAE----------GGYVRAMYNTSLCY 238 (331)
Q Consensus 172 --~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d-~~~A~~~~~~A~~----------~~~~~a~~~lg~~y 238 (331)
..++..+|+.+. ++.|-.+..+.+|+-...- ..+ ...-..+|.+--+ .|+......| .
T Consensus 713 LiSaGe~~KAi~i~---~d~gW~d~lidI~rkld~~---ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ksiVql---H 783 (1081)
T KOG1538|consen 713 LISAGEHVKAIEIC---GDHGWVDMLIDIARKLDKA---EREPLLLCATYLKKLDSPGLAAEIFLKMGDLKSLVQL---H 783 (1081)
T ss_pred hhcccchhhhhhhh---hcccHHHHHHHHHhhcchh---hhhHHHHHHHHHhhccccchHHHHHHHhccHHHHhhh---e
Confidence 345555554432 3344455555555443210 111 1111222222111 1222222211 1
Q ss_pred hcCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 020091 239 SFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 239 ~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
.+ .++.++|+..-++--+ --++.++..|..+.+..+|+||.+.|-+|-+
T Consensus 784 ve----~~~W~eAFalAe~hPe-~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr 832 (1081)
T KOG1538|consen 784 VE----TQRWDEAFALAEKHPE-FKDDVYMPYAQWLAENDRFEEAQKAFHKAGR 832 (1081)
T ss_pred ee----cccchHhHhhhhhCcc-ccccccchHHHHhhhhhhHHHHHHHHHHhcc
Confidence 11 3356666554333211 1245666777777777788888877776643
No 400
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=35.84 E-value=3.2e+02 Score=24.33 Aligned_cols=96 Identities=13% Similarity=0.013 Sum_probs=73.5
Q ss_pred HHHHHHHHhcCC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHH
Q 020091 104 LLRWGKRFKHGR-GVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKL 182 (331)
Q Consensus 104 ~~~LG~~y~~g~-g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~ 182 (331)
+-..|..+..|. ....++..-+.-.+++.+.-...++..++..+...++++.++..+++-+...+-
T Consensus 119 ~~~~~~~~~~g~~~~d~~f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~------------- 185 (280)
T COG3629 119 FEQAGELLSEGPVLGDDRFDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPY------------- 185 (280)
T ss_pred HHHHHHHhhcCCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-------------
Confidence 444455555444 345568888888888998889999999999999999999999999999988763
Q ss_pred HHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 183 LYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 183 ~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
+..++..|=..|.. .++...|+..|++...
T Consensus 186 --------~E~~~~~lm~~y~~----~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 186 --------DEPAYLRLMEAYLV----NGRQSAAIRAYRQLKK 215 (280)
T ss_pred --------chHHHHHHHHHHHH----cCCchHHHHHHHHHHH
Confidence 56666666666654 5778888888888755
No 401
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.84 E-value=6.1e+02 Score=27.60 Aligned_cols=186 Identities=15% Similarity=0.048 Sum_probs=96.0
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHh-------cCC---CHHHHHHHHHHHHHcCC
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYW-------EMD---KKEAAISLYRQAAVLGD 168 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~-------~~~---~~~~A~~~~~~a~~~~~ 168 (331)
.+..-+.+|.+|.. .+...+|++.|.+|... |.-+++..+-.... .|. ...+|.+||.+++.+-.
T Consensus 919 k~v~rfmlg~~yl~----tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle 994 (1480)
T KOG4521|consen 919 KPVIRFMLGIAYLG----TGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLE 994 (1480)
T ss_pred HHHHHHhhheeeec----CCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHH
Confidence 45556778888877 88999999999998865 55666666544321 121 23457788888876532
Q ss_pred CCCCccCHHHHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCCCCCHHHHHHH-------------HHHH----HHCCCH
Q 020091 169 PAAQPANAEEAVKLLYQASIA---GHVRAQYQLALCLHRGRGVDFNLQEAARW-------------YLRA----AEGGYV 228 (331)
Q Consensus 169 ~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~y~~G~g~~~d~~~A~~~-------------~~~A----~~~~~~ 228 (331)
...-.+.+..+-.+|++. +++.....--.++.... -.+-+.+|... +++. .+.|..
T Consensus 995 ---~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhl-dlgh~~qAy~ai~~npdserrrdcLRqlvivLfecg~l 1070 (1480)
T KOG4521|consen 995 ---EHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHL-DLGHWFQAYKAILRNPDSERRRDCLRQLVIVLFECGEL 1070 (1480)
T ss_pred ---HhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhh-chhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhccch
Confidence 334455666666666653 22221111111111100 02223333322 2222 112222
Q ss_pred HHHHHHHHHHhcCCCccccHHHHHH-HHHHHHHcCC---HHHHHHHHHHHhccCCHHHHH-HHHHHHHHcCCHHHHHH
Q 020091 229 RAMYNTSLCYSFGEGLPLSHRQARK-WMKRAADCGH---GKAQLEHGLGLFTEGEMMKAV-VYLELATRAGETAADHV 301 (331)
Q Consensus 229 ~a~~~lg~~y~~g~g~~~~~~~A~~-~~~~a~~~~~---~~a~~~Lg~~~~~~~~~~~A~-~~~~~A~~~~~~~a~~~ 301 (331)
+++..+- ...-.++-.. .++.++.... ..-+.-|-..+...+|+.+|- ..|+.|.+.+...++..
T Consensus 1071 ~~L~~fp--------figl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~se~~~~~ 1140 (1480)
T KOG4521|consen 1071 EALATFP--------FIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLESETCMTP 1140 (1480)
T ss_pred HHHhhCC--------ccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhcccccCCH
Confidence 2222210 1123344444 3444444432 223333444466788998877 55899998876655544
No 402
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=35.79 E-value=6e+02 Score=27.76 Aligned_cols=134 Identities=14% Similarity=0.008 Sum_probs=80.7
Q ss_pred HHHHHhccCCchHHHhHH------HHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-------C
Q 020091 69 LNKIAASFTLPQLRAASL------VCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-------G 135 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-------~ 135 (331)
++...+...++.+.++.. .+...+... ....+..+..|+.++.. .+|.++|+.+=.+|+-. +
T Consensus 936 ~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~-h~~~~~~~~~La~l~~~----~~d~~~Ai~~~~ka~ii~eR~~g~d 1010 (1236)
T KOG1839|consen 936 PEQGQEALLEDGFSEAYELPESLNLLNNVMGVL-HPEVASKYRSLAKLSNR----LGDNQEAIAQQRKACIISERVLGKD 1010 (1236)
T ss_pred hhhhhhhhcccchhhhhhhhhhhhHHHHhhhhc-chhHHHHHHHHHHHHhh----hcchHHHHHhcccceeeechhccCC
Confidence 444444555666665543 222222111 01245567788999988 89999999999998743 2
Q ss_pred CH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCH
Q 020091 136 ST---LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNL 212 (331)
Q Consensus 136 ~~---~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~ 212 (331)
++ .++.+|+...+..++...|...+.++..+-.-... -..+.-+....+++.++.. .+++
T Consensus 1011 s~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~g-------------e~hP~~a~~~~nle~l~~~----v~e~ 1073 (1236)
T KOG1839|consen 1011 SPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSG-------------EDHPPTALSFINLELLLLG----VEEA 1073 (1236)
T ss_pred CHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccC-------------CCCCchhhhhhHHHHHHhh----HHHH
Confidence 33 45567776666666777777777666543110000 0001122334578877654 5779
Q ss_pred HHHHHHHHHHHH
Q 020091 213 QEAARWYLRAAE 224 (331)
Q Consensus 213 ~~A~~~~~~A~~ 224 (331)
+.|+++.+.|..
T Consensus 1074 d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1074 DTALRYLESALA 1085 (1236)
T ss_pred HHHHHHHHHHHH
Confidence 999999999976
No 403
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=33.58 E-value=1.5e+02 Score=27.87 Aligned_cols=62 Identities=16% Similarity=0.026 Sum_probs=42.7
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHH----hCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC
Q 020091 105 LRWGKRFKHGRGVRKNLDKALDSFLKGA----ARGS--TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPA 170 (331)
Q Consensus 105 ~~LG~~y~~g~g~~~~~~~A~~~~~~A~----~~~~--~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~ 170 (331)
..|=..|.+ .+-+++|...-.++. ..++ +.-+|.+|.+..-..++..|.++|.+|+...|..
T Consensus 213 N~LLr~yL~----n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 213 NLLLRNYLH----NKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHhh----hHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 334445555 667777777776665 1122 3345678888888899999999999999876643
No 404
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=32.46 E-value=2.7e+02 Score=22.48 Aligned_cols=50 Identities=14% Similarity=-0.009 Sum_probs=34.0
Q ss_pred HHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhc
Q 020091 187 SIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSF 240 (331)
Q Consensus 187 ~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~ 240 (331)
+.++.++....-|.++.. .+++.+|+..|+...+. +.+.+.-.++.|+..
T Consensus 39 LRP~~~e~~~~~~~l~i~----r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 39 LRPEFPELDLFDGWLHIV----RGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred hCCCchHHHHHHHHHHHH----hCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 445677777777777765 67788888888887654 445555666666643
No 405
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=31.76 E-value=2.2e+02 Score=21.76 Aligned_cols=46 Identities=17% Similarity=0.197 Sum_probs=27.7
Q ss_pred HhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 020091 83 AASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGA 132 (331)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~ 132 (331)
.+..++.......-....+..+-..+.++.. .+++++|.+.|++++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~----~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEK----RGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHH----TT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHH----cCCHHHHHHHHHhhC
Confidence 3333444444433334455666666777777 789999999888764
No 406
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=31.45 E-value=90 Score=16.71 Aligned_cols=28 Identities=11% Similarity=-0.022 Sum_probs=19.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 020091 267 QLEHGLGLFTEGEMMKAVVYLELATRAG 294 (331)
Q Consensus 267 ~~~Lg~~~~~~~~~~~A~~~~~~A~~~~ 294 (331)
+..+-..+...|+++.|...|..-.+.|
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~g 31 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQG 31 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4455566777888888888887765544
No 407
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.31 E-value=1.6e+02 Score=29.17 Aligned_cols=73 Identities=15% Similarity=0.098 Sum_probs=45.5
Q ss_pred cCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----------CCHHHHHHHHH
Q 020091 76 FTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----------GSTLAMVDAGL 145 (331)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----------~~~~a~~~lg~ 145 (331)
++.|+++.|..+ ... ..+..=+-.||.+... .+++..|.++|.+|-+. |+.+.+..||.
T Consensus 648 l~lgrl~iA~~l----a~e---~~s~~Kw~~Lg~~al~----~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~ 716 (794)
T KOG0276|consen 648 LKLGRLDIAFDL----AVE---ANSEVKWRQLGDAALS----AGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLAS 716 (794)
T ss_pred hhcCcHHHHHHH----HHh---hcchHHHHHHHHHHhh----cccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHH
Confidence 455667766332 222 2345667788888888 88888888888888554 45555555665
Q ss_pred HHhcCCCHHHHHHH
Q 020091 146 MYWEMDKKEAAISL 159 (331)
Q Consensus 146 ~~~~~~~~~~A~~~ 159 (331)
.-.+.|..+-|.-.
T Consensus 717 ~~~~~g~~N~AF~~ 730 (794)
T KOG0276|consen 717 LAKKQGKNNLAFLA 730 (794)
T ss_pred HHHhhcccchHHHH
Confidence 55555554444433
No 408
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=31.29 E-value=1.9e+02 Score=20.33 Aligned_cols=47 Identities=11% Similarity=0.023 Sum_probs=30.7
Q ss_pred cccHHHHHHHHHHHHHc--CCHHHHHHHH---HHHhccCCHHHHHHHHHHHH
Q 020091 245 PLSHRQARKWMKRAADC--GHGKAQLEHG---LGLFTEGEMMKAVVYLELAT 291 (331)
Q Consensus 245 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg---~~~~~~~~~~~A~~~~~~A~ 291 (331)
....++|+..++++++. ..++.+..|| .+|++.|++.+.+.|--+=+
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44777888888888765 3334443444 45677888888887765443
No 409
>PF09127 Leuk-A4-hydro_C: Leukotriene A4 hydrolase, C-terminal; InterPro: IPR015211 This C-terminal domain is found in peptidases belonging to MEROPS peptidase family M1, particularly: aminopeptidase-1 of Caenorhabditis elegans, aminopeptidase O, aminopeptidase B and the bifunctional leukotriene A4 hydrolase/aminopeptidase. The domain adopts a structure consisting of two layers of parallel alpha-helices, five in the inner layer and four in the outer, arranged in an antiparallel manner, with perpendicular loops containing short helical segments on top. It is required for the formation of a deep cleft harbouring the catalytic Zn2+ site in leukotriene A4 hydrolase []. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0019370 leukotriene biosynthetic process; PDB: 3FUJ_A 3FU3_A 3FTX_A 3FTS_A 3B7R_L 2VJ8_A 3FTW_A 3FUF_A 3FU0_A 3CHO_A ....
Probab=31.29 E-value=2.6e+02 Score=21.93 Aligned_cols=90 Identities=14% Similarity=0.044 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEA 179 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A 179 (331)
.+..+-.|...| +....+|.+-...||+.++..+...++-.+...+...|+..--...|+.... ....+.|
T Consensus 50 ~~~~l~~Ld~~y--~l~~s~NaEI~~rW~~l~i~~~~~~~~~~v~~fL~~~GRmKfvrPlYr~L~~-------~~~~~~A 120 (143)
T PF09127_consen 50 SPEKLQALDKVY--KLSNSKNAEIRFRWLRLAIKAKYEPALPQVEEFLGSQGRMKFVRPLYRALAK-------PEGRDLA 120 (143)
T ss_dssp CHHHHHHHHHHH--CHCT-SSHHHHHHHHHHHHHTT-GGGHHHHHHHHHHS--HHHHHHHHHHHHT-------TTCHHHH
T ss_pred CHHHHHHHHHHh--CCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCChhHHHHHHHHHc-------cchHHHH
Confidence 566677888888 3345789999999999999999888888888888888988888888877765 2456778
Q ss_pred HHHHHHHHHCCCHHHHHHH
Q 020091 180 VKLLYQASIAGHVRAQYQL 198 (331)
Q Consensus 180 ~~~~~~a~~~~~~~a~~~l 198 (331)
+.+|.++-..=||-+...+
T Consensus 121 ~~~F~~~k~~YHpi~~~~V 139 (143)
T PF09127_consen 121 KETFEKAKPFYHPITRQMV 139 (143)
T ss_dssp HHHHHHHGGGS-HHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHH
Confidence 8888777665566555444
No 410
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=31.12 E-value=3.4e+02 Score=23.77 Aligned_cols=61 Identities=18% Similarity=0.096 Sum_probs=38.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCccc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 020091 215 AARWYLRAAEGGYVRAMYNTSLCYSFGEGLPL-----SHRQARKWMKRAADCGHGKAQLEHGLGLF 275 (331)
Q Consensus 215 A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~-----~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~ 275 (331)
....|++.++.|.......+=.++....+... ..+.|.+.++.|.+.++.+-++.|...+.
T Consensus 182 P~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~ 247 (258)
T PF07064_consen 182 PRDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLK 247 (258)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 34666677776666655555555544444444 67777777777777777777777666543
No 411
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=30.64 E-value=4.3e+02 Score=24.34 Aligned_cols=113 Identities=13% Similarity=-0.001 Sum_probs=70.6
Q ss_pred CCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHhcCCCc-cccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc--cC
Q 020091 209 DFNLQEAARWYLRAAEG-----GYVRAMYNTSLCYSFGEGL-PLSHRQARKWMKRAADC--GHGKAQLEHGLGLFT--EG 278 (331)
Q Consensus 209 ~~d~~~A~~~~~~A~~~-----~~~~a~~~lg~~y~~g~g~-~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~--~~ 278 (331)
.+||..|..||-.|.+. .+..|+..|-+++....=+ ..+--.++---+.+... ...+++...+..+.+ ..
T Consensus 222 ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLk 301 (411)
T KOG1463|consen 222 EKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLK 301 (411)
T ss_pred ccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHH
Confidence 68999999999999874 3478888887776543100 11222333333333333 356788888887755 55
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHH
Q 020091 279 EMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVD 322 (331)
Q Consensus 279 ~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~ 322 (331)
+|+.|+.-|+.=+..++.... .+..++..+-..++-+.++=|.
T Consensus 302 dF~~AL~~yk~eL~~D~ivr~-Hl~~Lyd~lLEknl~riIEPyS 344 (411)
T KOG1463|consen 302 DFEKALADYKKELAEDPIVRS-HLQSLYDNLLEKNLCRIIEPYS 344 (411)
T ss_pred HHHHHHHHhHHHHhcChHHHH-HHHHHHHHHHHHhHHHHcCchh
Confidence 999999999988776664433 3445555555555555544333
No 412
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.74 E-value=7.7e+02 Score=26.90 Aligned_cols=67 Identities=13% Similarity=0.101 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHH-------hcCCCccccHHHHHHHHHHHHHc
Q 020091 190 GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-GYVRAMYNTSLCY-------SFGEGLPLSHRQARKWMKRAADC 261 (331)
Q Consensus 190 ~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~-~~~~a~~~lg~~y-------~~g~g~~~~~~~A~~~~~~a~~~ 261 (331)
..+.--+.+|.+|.. .+...+|+++|.+|... |..+++..+-.-. .+|.. ..-...|.+||.++++.
T Consensus 918 lk~v~rfmlg~~yl~----tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t-~s~e~t~lhYYlkv~rl 992 (1480)
T KOG4521|consen 918 LKPVIRFMLGIAYLG----TGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKT-PSEELTALHYYLKVVRL 992 (1480)
T ss_pred hHHHHHHhhheeeec----CCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCC-CCchHHHHHHHHHHHHH
Confidence 345566788888875 67899999999999865 6777777665542 12322 22233478888888753
No 413
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=29.44 E-value=4.8e+02 Score=24.48 Aligned_cols=30 Identities=10% Similarity=-0.064 Sum_probs=18.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 020091 247 SHRQARKWMKRAADCGHGKAQLEHGLGLFT 276 (331)
Q Consensus 247 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~ 276 (331)
-...|...|+.....|-+++-..|+.|...
T Consensus 434 ~L~~Avaa~qav~~vGmPE~dviLAqC~v~ 463 (554)
T KOG2028|consen 434 ALTQAVAAYQAVHFVGMPECDVILAQCVVY 463 (554)
T ss_pred hhHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 445666666666666666666666665443
No 414
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=26.61 E-value=1.5e+02 Score=21.69 Aligned_cols=36 Identities=19% Similarity=-0.033 Sum_probs=21.3
Q ss_pred HHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 020091 129 LKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (331)
Q Consensus 129 ~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (331)
.-.+..|++..++.=+.-..+.||+++|...+.+|-
T Consensus 9 ~iI~~aG~Ars~~~eAl~~a~~gdfe~A~~~l~eA~ 44 (99)
T TIGR00823 9 ELIAYAGDARSKALEALKAAKAGDFAKARALVEQAG 44 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334445666666666666666666666666655543
No 415
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=26.18 E-value=3.9e+02 Score=26.24 Aligned_cols=90 Identities=11% Similarity=-0.093 Sum_probs=53.9
Q ss_pred ccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHH-HHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCC
Q 020091 75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWG-KRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMD 151 (331)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG-~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~ 151 (331)
.+..+....++..+....+..++ ....+-+-+ .+..+++ .+|.=.|+.--..|.+.+ ...|++.|+.++...+
T Consensus 384 ~ly~~~~~~~i~~~s~a~q~~~~--~~~~l~nraa~lmkRkW--~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~ 459 (758)
T KOG1310|consen 384 GLYESIVSGAISHYSRAIQYVPD--AIYLLENRAAALMKRKW--RGDSYLALRDCHVALRLNPSIQKAHFRLARALNELT 459 (758)
T ss_pred hhhhHHHHHHHHHHHHHhhhccc--hhHHHHhHHHHHHhhhc--cccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHh
Confidence 33444455665555555555443 122222223 3333333 345555655555666666 6779999999999999
Q ss_pred CHHHHHHHHHHHHHcCC
Q 020091 152 KKEAAISLYRQAAVLGD 168 (331)
Q Consensus 152 ~~~~A~~~~~~a~~~~~ 168 (331)
++.+|+.....+....|
T Consensus 460 r~~eal~~~~alq~~~P 476 (758)
T KOG1310|consen 460 RYLEALSCHWALQMSFP 476 (758)
T ss_pred hHHHhhhhHHHHhhcCc
Confidence 99999988766655544
No 416
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=25.95 E-value=89 Score=24.24 Aligned_cols=24 Identities=13% Similarity=0.051 Sum_probs=11.9
Q ss_pred hhchhcHHHHHHHHHhhhcCCCCC
Q 020091 308 QLSATSRDRAMLVVDSWRAMPSLH 331 (331)
Q Consensus 308 ~l~~~~~~~a~~~~~~~~~~~~~~ 331 (331)
.+.+-+.+.+..++.++++.+|.|
T Consensus 86 ~iaKle~e~Ae~vY~el~~~~P~H 109 (139)
T PF12583_consen 86 WIAKLEPENAEQVYEELLEAHPDH 109 (139)
T ss_dssp HHTTS-HHHHHHHHHHHHHH-TT-
T ss_pred HHHhhCHHHHHHHHHHHHHHCcch
Confidence 344445555566666666666655
No 417
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=25.52 E-value=1.7e+02 Score=21.30 Aligned_cols=36 Identities=14% Similarity=-0.064 Sum_probs=22.9
Q ss_pred HHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 020091 129 LKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (331)
Q Consensus 129 ~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (331)
.-.+..|++..++.=+.-..+.||+++|...+.+|-
T Consensus 7 ~iI~~aG~Ars~~~eAl~~a~~g~fe~A~~~l~ea~ 42 (97)
T cd00215 7 QIILHAGNARSKALEALKAAKEGDFAEAEELLEEAN 42 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334445666666666666667777777777666654
No 418
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=25.48 E-value=1e+02 Score=28.92 Aligned_cols=67 Identities=13% Similarity=0.074 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHhcCC----CCCCCHHHHHHHHHHHH-hC---------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 020091 99 REAMVLLRWGKRFKHGR----GVRKNLDKALDSFLKGA-AR---------GSTLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~----g~~~~~~~A~~~~~~A~-~~---------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (331)
|....+..||..-.-|+ -..|||..|+..++-.- .. -+...+|.+|.+|.-.+++.+|+..|...+
T Consensus 112 g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 112 GSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred ccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666665554443 23799999998875321 11 144567899999999999999999999886
Q ss_pred H
Q 020091 165 V 165 (331)
Q Consensus 165 ~ 165 (331)
.
T Consensus 192 ~ 192 (404)
T PF10255_consen 192 L 192 (404)
T ss_pred H
Confidence 4
No 419
>COG1447 CelC Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]
Probab=25.09 E-value=2.5e+02 Score=20.83 Aligned_cols=35 Identities=17% Similarity=-0.001 Sum_probs=22.0
Q ss_pred HHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 020091 130 KGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (331)
Q Consensus 130 ~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (331)
-.+..|++...+.-|.-+.+.|++++|.....+|-
T Consensus 12 iI~~aG~ArS~~~eAl~~Ak~g~f~~A~~~i~eA~ 46 (105)
T COG1447 12 IILHAGNARSKAYEALKAAKEGDFEEAEELIQEAN 46 (105)
T ss_pred HHHHcccHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33445666666666666667777777766666554
No 420
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.51 E-value=5.5e+02 Score=23.49 Aligned_cols=119 Identities=14% Similarity=0.090 Sum_probs=66.4
Q ss_pred CCCHHHHHHHHHHHHhCC--------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHC
Q 020091 118 RKNLDKALDSFLKGAARG--------STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIA 189 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~--------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~ 189 (331)
..+..|.+..|....-+. -......|+.+|.+.++...|...+.-. .... + + ++.+.
T Consensus 76 ~~e~~Kei~~~~l~~iq~rvisfeEqv~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~t--g-~-----------~~~d~ 140 (399)
T KOG1497|consen 76 EDELRKEISHFTLEKIQPRVISFEEQVASIRLHLASIYEKEQNWRDAAQVLVGI-PLDT--G-Q-----------KAYDV 140 (399)
T ss_pred CHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc-Cccc--c-h-----------hhhhh
Confidence 344555665555443221 2335678999999988888887665322 1110 0 0 01111
Q ss_pred C-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH----HCCCHHHHHHHHHHHhcCCCccccHHHHHHHH
Q 020091 190 G-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAA----EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWM 255 (331)
Q Consensus 190 ~-~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~----~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 255 (331)
+ -..-+..+|.+|.. .+|..+|..+..++. +..+..-+...-.||..-....+.+-+|...|
T Consensus 141 ~~kl~l~iriarlyLe----~~d~veae~~inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrY 207 (399)
T KOG1497|consen 141 EQKLLLCIRIARLYLE----DDDKVEAEAYINRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRY 207 (399)
T ss_pred HHHHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12335678888887 677888988888872 34566666666666654333233444444333
No 421
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=24.45 E-value=2.9e+02 Score=20.30 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=25.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHH
Q 020091 267 QLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVK 302 (331)
Q Consensus 267 ~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l 302 (331)
...-|.+-...||+.+|.+...++.+..+......+
T Consensus 62 al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L 97 (108)
T PF07219_consen 62 ALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYL 97 (108)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHH
Confidence 344566667788999999999988877655444443
No 422
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=24.25 E-value=6.9e+02 Score=24.56 Aligned_cols=135 Identities=14% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 020091 85 SLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQ 162 (331)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~ 162 (331)
..+|.+.+.- ..+-.+++.++.+|.. . ..++=...+++.++.. ++.--..|+..|.. .+.+++..+|.+
T Consensus 86 eh~c~~~l~~---~e~kmal~el~q~y~e----n-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~K 156 (711)
T COG1747 86 EHLCTRVLEY---GESKMALLELLQCYKE----N-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGK 156 (711)
T ss_pred HHHHHHHHHh---cchHHHHHHHHHHHHh----c-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHH
Q ss_pred HHHcCCCCC---------------CccCHHHHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 163 AAVLGDPAA---------------QPANAEEAVKLLYQASIA---GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 163 a~~~~~~~~---------------~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
++..--+.- ...|.+.-+....+.-.. +.....+.--.-+..+ ..|+++|++.+.-.++
T Consensus 157 a~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~---~eN~~eai~Ilk~il~ 233 (711)
T COG1747 157 ALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE---NENWTEAIRILKHILE 233 (711)
T ss_pred HHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc---ccCHHHHHHHHHHHhh
Q ss_pred CCCHHHH
Q 020091 225 GGYVRAM 231 (331)
Q Consensus 225 ~~~~~a~ 231 (331)
.+..+.+
T Consensus 234 ~d~k~~~ 240 (711)
T COG1747 234 HDEKDVW 240 (711)
T ss_pred hcchhhh
No 423
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.13 E-value=5.2e+02 Score=25.86 Aligned_cols=33 Identities=24% Similarity=0.094 Sum_probs=19.5
Q ss_pred HCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 188 IAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 188 ~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
+.++..-+-.||.+... .+++..|.++|.+|-+
T Consensus 662 e~~s~~Kw~~Lg~~al~----~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 662 EANSEVKWRQLGDAALS----AGELPLASECFLRARD 694 (794)
T ss_pred hhcchHHHHHHHHHHhh----cccchhHHHHHHhhcc
Confidence 34455556666666554 5566666666666643
No 424
>PF13041 PPR_2: PPR repeat family
Probab=23.92 E-value=1.8e+02 Score=17.59 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC
Q 020091 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG 135 (331)
Q Consensus 102 ~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~ 135 (331)
.++..|=..|.+ .+++++|.+.|++-.+.|
T Consensus 4 ~~yn~li~~~~~----~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 4 VTYNTLISGYCK----AGKFEEALKLFKEMKKRG 33 (50)
T ss_pred HHHHHHHHHHHH----CcCHHHHHHHHHHHHHcC
Confidence 334444444545 677777777777777766
No 425
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=23.52 E-value=1.3e+02 Score=21.82 Aligned_cols=36 Identities=17% Similarity=0.049 Sum_probs=23.2
Q ss_pred HHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 020091 129 LKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (331)
Q Consensus 129 ~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (331)
+-.+..|++...+.-+.-..+.||+++|...+.+|-
T Consensus 6 ~iI~~aG~Ars~~~eAl~~a~~~~fe~A~~~l~~a~ 41 (96)
T PF02255_consen 6 QIISHAGDARSLAMEALKAAREGDFEEAEELLKEAD 41 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 334455666677777777777777777777776654
No 426
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=23.20 E-value=7.8e+02 Score=25.01 Aligned_cols=11 Identities=18% Similarity=0.114 Sum_probs=4.8
Q ss_pred HhcCCCHHHHH
Q 020091 147 YWEMDKKEAAI 157 (331)
Q Consensus 147 ~~~~~~~~~A~ 157 (331)
+...|+..+|+
T Consensus 713 LiSaGe~~KAi 723 (1081)
T KOG1538|consen 713 LISAGEHVKAI 723 (1081)
T ss_pred hhcccchhhhh
Confidence 33444444443
No 427
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=23.19 E-value=1.8e+02 Score=21.55 Aligned_cols=34 Identities=12% Similarity=-0.022 Sum_probs=19.6
Q ss_pred HHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 020091 130 KGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQA 163 (331)
Q Consensus 130 ~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 163 (331)
-.+..|++...+.=+.-..+.||+++|...+.+|
T Consensus 13 II~~aG~Ars~~~eAl~~ak~gdf~~A~~~l~eA 46 (104)
T PRK09591 13 IILHSGNARTEVHEAFAAMREGNFDLAEQKLNQS 46 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344455665555555566666666666665554
No 428
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=22.42 E-value=2.7e+02 Score=25.54 Aligned_cols=63 Identities=5% Similarity=-0.017 Sum_probs=41.8
Q ss_pred HHHHHhccCCchHH-HhHHHHHHHHHHhCCC-CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC
Q 020091 69 LNKIAASFTLPQLR-AASLVCKSWNDALRPL-REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG 135 (331)
Q Consensus 69 ~~~~~~~~~~~~~~-~a~~~~~~~~~~~~~~-~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~ 135 (331)
+.....+++.|-.. +...++..+++..|+- ..+..|.-++.+... .+.++..+..|++|+..|
T Consensus 106 lsECl~Li~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~----~~~~e~vi~iyEeAi~ag 170 (353)
T PF15297_consen 106 LSECLNLIEEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPR----TGPIEDVIAIYEEAILAG 170 (353)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHcC
Confidence 33444566666665 6666666666666553 245566666777766 677788888888888877
No 429
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=22.39 E-value=7.8e+02 Score=24.50 Aligned_cols=182 Identities=13% Similarity=0.065 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHhCC------CHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHH
Q 020091 121 LDKALDSFLKGAARG------STLAMVDAGLMYWE-MDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVR 193 (331)
Q Consensus 121 ~~~A~~~~~~A~~~~------~~~a~~~lg~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 193 (331)
...|+.+++-+.+.. .+.+.+.||.++.. ..+.++|..++.|+..+.... ++.+- --.
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~----~~~d~-----------k~~ 101 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERH----RLTDL-----------KFR 101 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc----chHHH-----------HHH
Confidence 345666666666332 34567889988874 688999999999887664320 00000 122
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--C--C--HHHHHHHH-HHHhcCCCccccHHHHHHHHHHHHHc----C
Q 020091 194 AQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--G--Y--VRAMYNTS-LCYSFGEGLPLSHRQARKWMKRAADC----G 262 (331)
Q Consensus 194 a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~--~--~~a~~~lg-~~y~~g~g~~~~~~~A~~~~~~a~~~----~ 262 (331)
+.+-++.+|.. .+..-|..++++.++. + + ..-.+.+- ..+... .+|...|++.++..... |
T Consensus 102 ~~~ll~~i~~~-----~~~~~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~---~~d~~~Al~~L~~~~~~a~~~~ 173 (608)
T PF10345_consen 102 CQFLLARIYFK-----TNPKAALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQ---HKDYNAALENLQSIAQLANQRG 173 (608)
T ss_pred HHHHHHHHHHh-----cCHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHh---cccHHHHHHHHHHHHHHhhhcC
Confidence 34566777764 3445588888888764 2 1 11122221 111110 15899999999887654 4
Q ss_pred CHHHH----HHHHHHHhccCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHhhhchhcHHHHHHHHHhhh
Q 020091 263 HGKAQ----LEHGLGLFTEGEMMKAVVYLELATRAG------------ETAADHVKNVILQQLSATSRDRAMLVVDSWR 325 (331)
Q Consensus 263 ~~~a~----~~Lg~~~~~~~~~~~A~~~~~~A~~~~------------~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~ 325 (331)
++... ..-+.++...+..++++....++.... ...+...+-.+...+..++.+.+...++++.
T Consensus 174 d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 174 DPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44332 233555566777777888877774321 2456677777777888888777777666553
No 430
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.32 E-value=2.7e+02 Score=20.59 Aligned_cols=50 Identities=16% Similarity=0.104 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHc-C--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHH
Q 020091 248 HRQARKWMKRAADC-G--HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA 297 (331)
Q Consensus 248 ~~~A~~~~~~a~~~-~--~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~ 297 (331)
..+-.++++++-.. + .+..+-+||.+|...|+.+.|+.-|+.--..-++.
T Consensus 53 ~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES 105 (121)
T COG4259 53 TAALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPES 105 (121)
T ss_pred HHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccc
Confidence 33334555555433 2 35677889999999999999999887554444433
No 431
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=22.24 E-value=6.8e+02 Score=23.75 Aligned_cols=106 Identities=14% Similarity=-0.072 Sum_probs=61.3
Q ss_pred HHHCCCHHHHHHHHHHHhcCCCCCCCHHHH---HHHHHHHHHCC-CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHH-
Q 020091 186 ASIAGHVRAQYQLALCLHRGRGVDFNLQEA---ARWYLRAAEGG-YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD- 260 (331)
Q Consensus 186 a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A---~~~~~~A~~~~-~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~- 260 (331)
.++.=.+..++.+...|+. .++...- +..+-+-+..+ +...+..|-.|+....-..+-++.|-..-.++.-
T Consensus 163 tlD~i~ak~~fy~~l~~E~----~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~p 238 (493)
T KOG2581|consen 163 TLDLIAAKLYFYLYLSYEL----EGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYP 238 (493)
T ss_pred hHHHHHHHHHHHHHHHHHh----hcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCc
Confidence 3343356677888888876 3333332 33333444544 4444443333332211114467777777666641
Q ss_pred ---cCCHHHH--HHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 020091 261 ---CGHGKAQ--LEHGLGLFTEGEMMKAVVYLELATRAGE 295 (331)
Q Consensus 261 ---~~~~~a~--~~Lg~~~~~~~~~~~A~~~~~~A~~~~~ 295 (331)
.++..|. |.+|.|..-+.+|..|.+++-.|+...+
T Consensus 239 e~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 239 EAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred cccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence 1233443 5688888889999999999999988765
No 432
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=21.80 E-value=1.8e+02 Score=21.74 Aligned_cols=29 Identities=17% Similarity=0.040 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 265 KAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 265 ~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
...+.-|..+...||.+.|+.+|.+.+..
T Consensus 39 ~~l~~~A~~~~~egd~E~AYvl~~R~~~L 67 (115)
T PF08969_consen 39 NKLLREAEEYRQEGDEEQAYVLYMRYLTL 67 (115)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34566778899999999999999999864
No 433
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=21.73 E-value=2.6e+02 Score=20.70 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=15.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHH
Q 020091 141 VDAGLMYWEMDKKEAAISLYRQAAV 165 (331)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (331)
..|+.+|...|.+++|++++.+-++
T Consensus 43 ~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 43 QELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHccCccHHHHHHHHHHhc
Confidence 3456666666666666666665555
No 434
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=21.55 E-value=1.4e+02 Score=15.49 Aligned_cols=15 Identities=20% Similarity=0.144 Sum_probs=7.1
Q ss_pred CHHHHHHHHHHHHHc
Q 020091 279 EMMKAVVYLELATRA 293 (331)
Q Consensus 279 ~~~~A~~~~~~A~~~ 293 (331)
+.+++...|++++..
T Consensus 2 ~~~~~r~i~e~~l~~ 16 (33)
T smart00386 2 DIERARKIYERALEK 16 (33)
T ss_pred cHHHHHHHHHHHHHH
Confidence 344444555555443
No 435
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=21.00 E-value=2.3e+02 Score=21.42 Aligned_cols=35 Identities=17% Similarity=0.055 Sum_probs=19.3
Q ss_pred HHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 020091 130 KGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (331)
Q Consensus 130 ~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (331)
-.+..|++..++.=|.-..+.||+++|...+.+|-
T Consensus 24 II~~aG~ArS~~~eAl~~Ak~gdfe~A~~~l~eA~ 58 (115)
T PRK10454 24 LIINSGQARSLAYAALKQAKQGDFAAAKAMMDQSR 58 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33344555555555555556666666665555543
No 436
>COG1447 CelC Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]
Probab=20.99 E-value=3.5e+02 Score=20.12 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=25.3
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 020091 257 RAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 257 ~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
..+..|+......-|.-+.+.|+|++|....+.|-+
T Consensus 12 iI~~aG~ArS~~~eAl~~Ak~g~f~~A~~~i~eA~~ 47 (105)
T COG1447 12 IILHAGNARSKAYEALKAAKEGDFEEAEELIQEAND 47 (105)
T ss_pred HHHHcccHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334457777777767777778888888887777643
No 437
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=20.96 E-value=2.5e+02 Score=20.54 Aligned_cols=36 Identities=22% Similarity=0.220 Sum_probs=21.6
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 020091 257 RAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 257 ~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
..+..|+..+++.=+.-....|||++|...++.|-+
T Consensus 10 iI~~aG~Ars~~~eAl~~a~~gdfe~A~~~l~eA~~ 45 (99)
T TIGR00823 10 LIAYAGDARSKALEALKAAKAGDFAKARALVEQAGM 45 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333445555555555556667777777777666643
No 438
>PRK11619 lytic murein transglycosylase; Provisional
Probab=20.86 E-value=8.8e+02 Score=24.51 Aligned_cols=104 Identities=9% Similarity=-0.067 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHHHHhCC--CH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC----------CccCHHHHHH
Q 020091 118 RKNLDKALDSFLKGAARG--ST----LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA----------QPANAEEAVK 181 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~--~~----~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~----------~~~~~~~A~~ 181 (331)
.+|.+.|...+.+..... .. .....+|.-........+|..|+..+.....+.. ..+|.+....
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~ 333 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNT 333 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHH
Confidence 567788888887653332 11 1223344333333225677777776543221111 4556666666
Q ss_pred HHHHHH--HCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 182 LLYQAS--IAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 182 ~~~~a~--~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
++...- ....+...|.+|..+.. .++.++|..+|++++..
T Consensus 334 ~i~~L~~~~~~~~rw~YW~aRa~~~----~g~~~~A~~~~~~~a~~ 375 (644)
T PRK11619 334 WLARLPMEAKEKDEWRYWQADLLLE----QGRKAEAEEILRQLMQQ 375 (644)
T ss_pred HHHhcCHhhccCHhhHHHHHHHHHH----cCCHHHHHHHHHHHhcC
Confidence 665532 23577889999999876 67899999999998764
No 439
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.69 E-value=8.5e+02 Score=24.26 Aligned_cols=92 Identities=9% Similarity=-0.022 Sum_probs=55.7
Q ss_pred HHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC----CHHHH--HHHH
Q 020091 71 KIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG----STLAM--VDAG 144 (331)
Q Consensus 71 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~----~~~a~--~~lg 144 (331)
....+-..|.+..|.+.|+.+++..+.. +|.++..+=.+|.-. .++|+=-+++++..-..+ .|..- .-|+
T Consensus 348 ~m~~l~~RGC~rTA~E~cKlllsLdp~e-DPl~~l~~ID~~ALr---areYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA 423 (665)
T KOG2422|consen 348 YMQSLAQRGCWRTALEWCKLLLSLDPSE-DPLGILYLIDIYALR---AREYQWIIELSNEPENMNKLSQLPNFGYSLALA 423 (665)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCcC-CchhHHHHHHHHHHH---HHhHHHHHHHHHHHHhhccHhhcCCchHHHHHH
Confidence 3334456799999999999999887753 565555455555431 667766666666553332 22222 3455
Q ss_pred HHHhcCCC---HHHHHHHHHHHHHc
Q 020091 145 LMYWEMDK---KEAAISLYRQAAVL 166 (331)
Q Consensus 145 ~~~~~~~~---~~~A~~~~~~a~~~ 166 (331)
..|..+.+ .+.|...+.+|+.+
T Consensus 424 ~f~l~~~~~~~rqsa~~~l~qAl~~ 448 (665)
T KOG2422|consen 424 RFFLRKNEEDDRQSALNALLQALKH 448 (665)
T ss_pred HHHHhcCChhhHHHHHHHHHHHHHh
Confidence 55655533 55666666666665
No 440
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=20.52 E-value=6.4e+02 Score=22.76 Aligned_cols=107 Identities=13% Similarity=0.032 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHHHHH----CCC----HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC-----CH--HHHH--HHH
Q 020091 209 DFNLQEAARWYLRAAE----GGY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-----HG--KAQL--EHG 271 (331)
Q Consensus 209 ~~d~~~A~~~~~~A~~----~~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~--~a~~--~Lg 271 (331)
.+.|.+|+....-.+. .++ ......=..+|.. .++..++..-+..|-... ++ .+.. .-|
T Consensus 138 ~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~----irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sG 213 (421)
T COG5159 138 TGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHE----IRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSG 213 (421)
T ss_pred cccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHH----HHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhcc
Confidence 5668888777665542 122 2333334445544 456666666666553221 12 2232 236
Q ss_pred HHHhccCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHH-hhhchhcHHHHHH
Q 020091 272 LGLFTEGEMMKAVVYLELATRA-----GETAADHVKNVIL-QQLSATSRDRAML 319 (331)
Q Consensus 272 ~~~~~~~~~~~A~~~~~~A~~~-----~~~~a~~~l~~~~-~~l~~~~~~~a~~ 319 (331)
.++++..||.-|..||-.|.+- .+..|+..+..++ .++....+++.+.
T Consensus 214 Ilhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~ 267 (421)
T COG5159 214 ILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKA 267 (421)
T ss_pred ceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 6667788999999999888874 3466666555443 3443344444443
No 441
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=20.34 E-value=6.9e+02 Score=23.10 Aligned_cols=46 Identities=9% Similarity=-0.125 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020091 226 GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGL 274 (331)
Q Consensus 226 ~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~ 274 (331)
.+..|+-..+..+.+ ...++++.|+.-|+.=+.. ++-...++..+|
T Consensus 283 ~~i~AmkavAeA~~n--RSLkdF~~AL~~yk~eL~~-D~ivr~Hl~~Ly 328 (411)
T KOG1463|consen 283 RDIDAMKAVAEAFGN--RSLKDFEKALADYKKELAE-DPIVRSHLQSLY 328 (411)
T ss_pred cchHHHHHHHHHhcC--CcHHHHHHHHHHhHHHHhc-ChHHHHHHHHHH
Confidence 356666666666632 3356777777777665433 333333343433
No 442
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=20.09 E-value=5.7e+02 Score=24.93 Aligned_cols=91 Identities=11% Similarity=-0.014 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccC-CHHHHHHH
Q 020091 212 LQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEG-EMMKAVVY 286 (331)
Q Consensus 212 ~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~-~~~~A~~~ 286 (331)
..+-...|++|... ||..-+......-.. .+.+.+-...|.+++.. .+++.|..-+.-.++-+ +++.|...
T Consensus 87 ~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk----~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRal 162 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNGDVKLWLSYIAFCKK----KKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARAL 162 (568)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----hcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHH
Confidence 34567888888764 677766543332222 22477778888888765 56777776666566654 59999999
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 020091 287 LELATRAGETAADHVKNVIL 306 (331)
Q Consensus 287 ~~~A~~~~~~~a~~~l~~~~ 306 (331)
+.++++..+.....+...+-
T Consensus 163 flrgLR~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 163 FLRGLRFNPDSPKLWKEYFR 182 (568)
T ss_pred HHHHhhcCCCChHHHHHHHH
Confidence 99999987766555544443
No 443
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=20.09 E-value=2.7e+02 Score=20.32 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=20.9
Q ss_pred HHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 020091 259 ADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 259 ~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
...|+..+++.=+.-....|||++|...++.|-+
T Consensus 10 ~~aG~Ars~~~eAl~~a~~g~fe~A~~~l~ea~~ 43 (97)
T cd00215 10 LHAGNARSKALEALKAAKEGDFAEAEELLEEAND 43 (97)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3345555555555556667777777777776643
No 444
>PRK00971 glutaminase; Provisional
Probab=20.05 E-value=5.6e+02 Score=23.15 Aligned_cols=82 Identities=13% Similarity=0.052 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHC-CCHHHHHH
Q 020091 119 KNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIA-GHVRAQYQ 197 (331)
Q Consensus 119 ~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~ 197 (331)
..++.-.+++++.+..........+...-...++.+.|+.+|.+.... ...|.++++..|.+-+.. .+..-+..
T Consensus 132 ~~~~~il~~~~~~ag~~~i~~d~~v~~SE~~t~~RN~Ala~~lks~g~-----i~~d~~~~Ld~Yf~qCsi~vt~~dLA~ 206 (307)
T PRK00971 132 EPCERLLEFVRQLAGNPDILYDEVVASSELEHADRNAAIAYLMKSFGN-----IENDVETVLDTYFHQCALEMSCVDLAR 206 (307)
T ss_pred HHHHHHHHHHHHHhCCCCCcccHHHHHHHhhccHHHHHHHHHHHHCCC-----CCCCHHHHHHHHHHHhccceeHHHHHH
Confidence 345667777777774333333333444455568888899998887654 456889999988887654 46677778
Q ss_pred HHHHHhcC
Q 020091 198 LALCLHRG 205 (331)
Q Consensus 198 lg~~y~~G 205 (331)
+|..+.+|
T Consensus 207 ~~a~LAn~ 214 (307)
T PRK00971 207 AGLFLANG 214 (307)
T ss_pred HHHHHHcC
Confidence 88887763
Done!