Query 020091
Match_columns 331
No_of_seqs 238 out of 2286
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 11:39:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020091.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020091hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e4b_A ALGK; tetratricopeptide 100.0 1.1E-32 3.6E-37 260.5 22.3 246 79-328 155-422 (452)
2 2xm6_A Protein corresponding t 100.0 3E-31 1E-35 252.7 31.9 242 78-323 56-321 (490)
3 2xm6_A Protein corresponding t 100.0 5.9E-31 2E-35 250.7 31.8 245 78-326 92-359 (490)
4 1ouv_A Conserved hypothetical 100.0 1.2E-30 4.2E-35 229.1 25.8 239 67-309 8-267 (273)
5 3rjv_A Putative SEL1 repeat pr 100.0 7.4E-31 2.5E-35 222.9 23.3 194 89-306 6-210 (212)
6 1ouv_A Conserved hypothetical 100.0 2.4E-29 8.3E-34 220.8 27.6 229 97-329 2-253 (273)
7 3e4b_A ALGK; tetratricopeptide 100.0 3.2E-29 1.1E-33 236.6 20.0 239 80-326 89-386 (452)
8 3rjv_A Putative SEL1 repeat pr 100.0 8.1E-27 2.8E-31 198.0 21.0 181 122-326 3-196 (212)
9 1klx_A Cysteine rich protein B 99.9 1.3E-25 4.6E-30 177.5 14.6 136 112-272 2-137 (138)
10 1w3b_A UDP-N-acetylglucosamine 99.9 6.2E-21 2.1E-25 175.2 28.0 242 75-330 43-337 (388)
11 3hym_B Cell division cycle pro 99.9 8.7E-21 3E-25 169.2 26.8 248 68-331 25-303 (330)
12 1w3b_A UDP-N-acetylglucosamine 99.9 1.1E-20 3.6E-25 173.7 28.1 240 76-331 112-372 (388)
13 1klx_A Cysteine rich protein B 99.9 7.1E-22 2.4E-26 156.0 14.9 127 172-304 7-137 (138)
14 2pl2_A Hypothetical conserved 99.9 1.2E-20 4.2E-25 160.2 21.1 194 99-325 3-212 (217)
15 4eqf_A PEX5-related protein; a 99.9 5.8E-20 2E-24 167.2 25.5 240 68-323 68-352 (365)
16 3ieg_A DNAJ homolog subfamily 99.9 1.9E-19 6.5E-24 162.0 27.8 249 69-331 7-339 (359)
17 3cv0_A Peroxisome targeting si 99.9 1.7E-19 5.8E-24 160.6 25.5 243 68-326 24-314 (327)
18 1fch_A Peroxisomal targeting s 99.9 2.1E-19 7.1E-24 163.2 25.5 240 68-323 67-355 (368)
19 2pl2_A Hypothetical conserved 99.9 4.8E-20 1.6E-24 156.5 19.9 191 66-291 6-212 (217)
20 3vtx_A MAMA; tetratricopeptide 99.8 9E-20 3.1E-24 149.9 19.6 171 100-303 4-180 (184)
21 2y4t_A DNAJ homolog subfamily 99.8 1.1E-18 3.7E-23 162.9 26.8 249 69-330 30-361 (450)
22 3hym_B Cell division cycle pro 99.8 6.5E-19 2.2E-23 157.0 23.9 221 73-307 64-315 (330)
23 3uq3_A Heat shock protein STI1 99.8 1E-18 3.5E-23 150.2 23.9 212 68-294 8-237 (258)
24 2y4t_A DNAJ homolog subfamily 99.8 1.6E-18 5.6E-23 161.6 26.9 230 66-309 61-376 (450)
25 2xpi_A Anaphase-promoting comp 99.8 2.2E-18 7.7E-23 166.6 26.1 249 67-331 307-583 (597)
26 3u4t_A TPR repeat-containing p 99.8 9E-19 3.1E-23 152.3 21.0 225 68-304 6-263 (272)
27 2gw1_A Mitochondrial precursor 99.8 1.1E-18 3.8E-23 165.1 23.3 249 67-330 8-370 (514)
28 2h6f_A Protein farnesyltransfe 99.8 6.3E-19 2.2E-23 162.4 20.5 222 74-330 106-351 (382)
29 4eqf_A PEX5-related protein; a 99.8 1.8E-19 6.3E-24 163.9 16.8 217 100-330 64-313 (365)
30 1fch_A Peroxisomal targeting s 99.8 2.9E-19 1E-23 162.2 15.8 239 77-330 37-317 (368)
31 4gyw_A UDP-N-acetylglucosamine 99.8 1.1E-18 3.7E-23 172.9 19.4 164 98-294 6-175 (723)
32 3fp2_A TPR repeat-containing p 99.8 9.1E-18 3.1E-22 160.0 24.1 249 67-330 27-376 (537)
33 2h6f_A Protein farnesyltransfe 99.8 3.4E-18 1.2E-22 157.5 19.5 198 99-330 95-307 (382)
34 2gw1_A Mitochondrial precursor 99.8 1.2E-17 4.1E-22 158.0 23.5 240 77-330 201-481 (514)
35 2vq2_A PILW, putative fimbrial 99.8 2.2E-17 7.4E-22 138.8 22.4 197 99-330 6-214 (225)
36 4abn_A Tetratricopeptide repea 99.8 8E-18 2.7E-22 159.5 21.6 197 98-323 99-317 (474)
37 3ieg_A DNAJ homolog subfamily 99.8 2.1E-17 7E-22 148.6 23.2 219 100-330 2-266 (359)
38 2ho1_A Type 4 fimbrial biogene 99.8 1.5E-17 5.1E-22 143.1 21.2 194 69-297 41-242 (252)
39 2q7f_A YRRB protein; TPR, prot 99.8 9.5E-18 3.2E-22 143.1 18.9 201 67-302 25-233 (243)
40 3fp2_A TPR repeat-containing p 99.8 1.7E-17 5.8E-22 158.1 21.7 237 80-330 217-494 (537)
41 2xpi_A Anaphase-promoting comp 99.8 2.5E-17 8.4E-22 159.3 22.7 237 77-330 284-548 (597)
42 2ho1_A Type 4 fimbrial biogene 99.8 4.7E-17 1.6E-21 139.9 22.0 196 101-331 37-242 (252)
43 3uq3_A Heat shock protein STI1 99.8 2.1E-17 7.3E-22 141.8 19.7 210 100-328 4-237 (258)
44 3mkr_A Coatomer subunit epsilo 99.8 3E-18 1E-22 152.2 14.6 242 73-331 7-268 (291)
45 4a1s_A PINS, partner of inscut 99.8 1E-17 3.4E-22 154.6 18.6 245 68-328 51-373 (411)
46 2q7f_A YRRB protein; TPR, prot 99.8 1.3E-17 4.4E-22 142.2 17.7 197 100-331 22-226 (243)
47 4i17_A Hypothetical protein; T 99.8 8.6E-17 2.9E-21 136.7 21.9 174 99-305 5-223 (228)
48 3sf4_A G-protein-signaling mod 99.8 1.9E-17 6.5E-22 151.7 18.5 248 65-326 9-335 (406)
49 3ro2_A PINS homolog, G-protein 99.8 4E-17 1.4E-21 145.0 19.9 249 67-329 7-334 (338)
50 3vtx_A MAMA; tetratricopeptide 99.8 4.8E-17 1.7E-21 133.5 18.4 164 136-330 4-173 (184)
51 3cv0_A Peroxisome targeting si 99.8 6E-17 2E-21 144.0 19.9 216 101-330 21-272 (327)
52 4g1t_A Interferon-induced prot 99.7 1.8E-16 6.1E-21 149.0 22.5 204 98-307 48-292 (472)
53 4g1t_A Interferon-induced prot 99.7 1.1E-16 3.9E-21 150.3 20.3 248 74-330 60-404 (472)
54 1xnf_A Lipoprotein NLPI; TPR, 99.7 4.2E-16 1.4E-20 135.3 21.8 230 76-321 16-269 (275)
55 4gyw_A UDP-N-acetylglucosamine 99.7 4.8E-17 1.6E-21 161.1 16.4 161 135-326 7-173 (723)
56 3u4t_A TPR repeat-containing p 99.7 2.9E-16 9.9E-21 136.4 18.7 197 70-275 42-266 (272)
57 4abn_A Tetratricopeptide repea 99.7 2.7E-16 9.4E-21 149.0 19.2 194 65-290 102-318 (474)
58 3ulq_A Response regulator aspa 99.7 3.7E-16 1.3E-20 143.4 19.3 193 71-290 109-332 (383)
59 2vq2_A PILW, putative fimbrial 99.7 7.7E-15 2.6E-19 123.1 24.8 195 69-296 12-214 (225)
60 4i17_A Hypothetical protein; T 99.7 1.7E-15 5.9E-20 128.6 20.7 168 134-331 4-213 (228)
61 1qqe_A Vesicular transport pro 99.7 3.2E-15 1.1E-19 132.5 21.8 191 108-329 44-271 (292)
62 3urz_A Uncharacterized protein 99.7 7.7E-16 2.6E-20 129.5 16.3 166 100-296 3-189 (208)
63 3ulq_A Response regulator aspa 99.7 2.5E-15 8.4E-20 137.9 20.5 165 103-293 105-293 (383)
64 2ond_A Cleavage stimulation fa 99.7 2.7E-14 9.4E-19 127.3 25.1 217 82-330 33-273 (308)
65 3q15_A PSP28, response regulat 99.7 2.9E-15 1E-19 137.3 18.7 213 71-292 107-364 (378)
66 4a1s_A PINS, partner of inscut 99.7 2.4E-15 8.2E-20 138.5 17.5 213 100-326 47-331 (411)
67 3qky_A Outer membrane assembly 99.7 6.5E-15 2.2E-19 127.8 19.2 173 97-295 11-226 (261)
68 3nf1_A KLC 1, kinesin light ch 99.7 6.8E-15 2.3E-19 129.7 19.2 203 100-330 26-310 (311)
69 3mkr_A Coatomer subunit epsilo 99.7 4E-14 1.4E-18 125.5 23.9 187 77-299 77-270 (291)
70 3as5_A MAMA; tetratricopeptide 99.7 1.3E-14 4.4E-19 117.7 19.0 161 100-293 7-173 (186)
71 1xnf_A Lipoprotein NLPI; TPR, 99.7 9.3E-15 3.2E-19 126.7 19.2 204 68-287 46-269 (275)
72 2pzi_A Probable serine/threoni 99.6 1.7E-15 5.9E-20 149.7 16.2 191 98-325 391-603 (681)
73 3sf4_A G-protein-signaling mod 99.6 4.8E-15 1.6E-19 135.6 17.9 214 99-326 7-295 (406)
74 4ga2_A E3 SUMO-protein ligase 99.6 9.8E-16 3.4E-20 122.2 10.6 141 106-279 2-149 (150)
75 3edt_B KLC 2, kinesin light ch 99.6 6.8E-15 2.3E-19 127.6 15.9 166 100-293 42-281 (283)
76 3qky_A Outer membrane assembly 99.6 2E-14 6.7E-19 124.7 18.5 174 133-331 11-228 (261)
77 3nf1_A KLC 1, kinesin light ch 99.6 1E-14 3.5E-19 128.5 16.8 196 69-294 31-308 (311)
78 3urz_A Uncharacterized protein 99.6 5.9E-15 2E-19 124.1 13.3 175 65-273 4-199 (208)
79 3q15_A PSP28, response regulat 99.6 3.1E-14 1E-18 130.5 19.2 209 103-325 103-363 (378)
80 3ro2_A PINS homolog, G-protein 99.6 3.6E-14 1.2E-18 125.7 18.1 212 101-326 5-291 (338)
81 2pzi_A Probable serine/threoni 99.6 5.5E-15 1.9E-19 146.1 12.5 168 76-279 402-583 (681)
82 1qqe_A Vesicular transport pro 99.6 9.2E-14 3.1E-18 123.0 17.0 204 68-298 39-274 (292)
83 2yhc_A BAMD, UPF0169 lipoprote 99.6 2.6E-13 8.7E-18 115.3 18.6 104 100-225 3-125 (225)
84 3as5_A MAMA; tetratricopeptide 99.6 1.5E-13 5.1E-18 111.3 15.8 163 137-330 8-176 (186)
85 4gco_A Protein STI-1; structur 99.5 8.3E-14 2.8E-18 107.6 13.2 110 100-238 12-125 (126)
86 4ga2_A E3 SUMO-protein ligase 99.5 6.5E-15 2.2E-19 117.4 7.1 136 142-306 2-144 (150)
87 2ifu_A Gamma-SNAP; membrane fu 99.5 3.3E-13 1.1E-17 120.3 19.0 188 77-297 3-227 (307)
88 3edt_B KLC 2, kinesin light ch 99.5 1.7E-13 5.9E-18 118.6 16.4 153 117-293 13-198 (283)
89 2vsy_A XCC0866; transferase, g 99.5 3.4E-13 1.2E-17 130.3 17.7 147 119-294 3-158 (568)
90 2yhc_A BAMD, UPF0169 lipoprote 99.5 1.3E-12 4.3E-17 111.0 17.4 172 136-331 3-217 (225)
91 2ifu_A Gamma-SNAP; membrane fu 99.5 6.3E-12 2.2E-16 111.9 22.0 185 67-285 37-253 (307)
92 1xi4_A Clathrin heavy chain; a 99.5 1.2E-11 4.1E-16 126.7 26.2 207 98-329 1102-1347(1630)
93 3qou_A Protein YBBN; thioredox 99.5 1.2E-12 4.1E-17 115.6 15.9 162 98-292 114-283 (287)
94 2ond_A Cleavage stimulation fa 99.5 1E-11 3.6E-16 110.4 22.1 182 82-296 81-273 (308)
95 1hz4_A MALT regulatory protein 99.5 6.9E-12 2.4E-16 114.1 21.2 239 72-325 21-320 (373)
96 4gco_A Protein STI-1; structur 99.5 2.1E-12 7.3E-17 99.6 14.8 108 137-273 13-124 (126)
97 2r5s_A Uncharacterized protein 99.4 3.2E-13 1.1E-17 110.2 9.8 158 102-292 7-172 (176)
98 2vsy_A XCC0866; transferase, g 99.4 2E-12 7E-17 124.8 17.0 162 78-271 2-169 (568)
99 2qfc_A PLCR protein; TPR, HTH, 99.4 1.7E-11 5.9E-16 108.1 21.4 166 101-293 75-266 (293)
100 3gyz_A Chaperone protein IPGC; 99.4 1.2E-12 4.2E-17 104.4 12.1 100 99-227 34-135 (151)
101 1hh8_A P67PHOX, NCF-2, neutrop 99.4 3.6E-12 1.2E-16 106.4 15.6 95 101-225 6-100 (213)
102 1hz4_A MALT regulatory protein 99.4 1.5E-11 5.2E-16 111.8 20.6 208 74-293 62-322 (373)
103 1hh8_A P67PHOX, NCF-2, neutrop 99.4 1.1E-11 3.9E-16 103.3 17.2 129 137-297 6-154 (213)
104 2fo7_A Synthetic consensus TPR 99.4 2E-11 7E-16 93.0 17.2 129 138-295 2-134 (136)
105 2ooe_A Cleavage stimulation fa 99.4 3.1E-11 1.1E-15 115.4 22.3 217 83-329 256-494 (530)
106 2c2l_A CHIP, carboxy terminus 99.4 3.4E-12 1.2E-16 112.4 13.5 189 99-326 2-198 (281)
107 3u3w_A Transcriptional activat 99.4 5.4E-11 1.8E-15 104.9 20.9 161 106-293 80-266 (293)
108 2fo7_A Synthetic consensus TPR 99.4 3.9E-11 1.3E-15 91.4 16.7 128 102-262 2-133 (136)
109 3gyz_A Chaperone protein IPGC; 99.4 6.8E-12 2.3E-16 100.0 12.0 97 136-261 35-133 (151)
110 1p5q_A FKBP52, FK506-binding p 99.3 1.5E-12 5E-17 117.7 7.8 161 118-292 126-293 (336)
111 2r5s_A Uncharacterized protein 99.3 7.4E-12 2.5E-16 102.0 10.9 158 68-260 9-172 (176)
112 3qou_A Protein YBBN; thioredox 99.3 3.3E-11 1.1E-15 106.3 15.7 175 119-325 100-282 (287)
113 3u3w_A Transcriptional activat 99.3 5.3E-11 1.8E-15 105.0 16.8 166 70-261 80-266 (293)
114 4gcn_A Protein STI-1; structur 99.3 2.6E-11 8.9E-16 93.4 13.0 112 101-234 8-122 (127)
115 2qfc_A PLCR protein; TPR, HTH, 99.3 7.8E-11 2.7E-15 103.9 17.9 166 69-260 79-265 (293)
116 1a17_A Serine/threonine protei 99.3 9E-11 3.1E-15 93.4 16.0 128 136-292 12-145 (166)
117 1a17_A Serine/threonine protei 99.3 1.2E-10 4.2E-15 92.6 16.8 128 100-260 12-145 (166)
118 4f3v_A ESX-1 secretion system 99.3 2.4E-11 8.2E-16 106.1 13.4 183 78-296 19-240 (282)
119 3dra_A Protein farnesyltransfe 99.3 3.5E-10 1.2E-14 100.5 21.1 221 68-301 35-296 (306)
120 3upv_A Heat shock protein STI1 99.3 6E-11 2.1E-15 90.6 13.9 110 100-238 3-122 (126)
121 3gw4_A Uncharacterized protein 99.3 1.8E-10 6.2E-15 94.9 17.8 94 192-293 66-176 (203)
122 1b89_A Protein (clathrin heavy 99.3 1.9E-12 6.4E-17 119.5 6.2 207 100-329 60-274 (449)
123 2vgx_A Chaperone SYCD; alterna 99.3 7.9E-12 2.7E-16 99.1 8.9 98 99-225 19-118 (148)
124 3sz7_A HSC70 cochaperone (SGT) 99.3 3.4E-11 1.2E-15 96.7 12.7 111 99-238 9-123 (164)
125 4gcn_A Protein STI-1; structur 99.3 6.8E-11 2.3E-15 91.1 13.2 104 137-294 8-113 (127)
126 1p5q_A FKBP52, FK506-binding p 99.3 1.3E-10 4.4E-15 104.9 16.3 127 100-259 146-292 (336)
127 4f3v_A ESX-1 secretion system 99.3 7.6E-12 2.6E-16 109.2 7.9 200 103-330 9-240 (282)
128 2lni_A Stress-induced-phosphop 99.3 1.4E-10 4.7E-15 88.6 13.8 112 99-239 14-129 (133)
129 2vgx_A Chaperone SYCD; alterna 99.3 3.7E-11 1.3E-15 95.2 10.6 94 192-293 21-118 (148)
130 1xi4_A Clathrin heavy chain; a 99.2 4.6E-10 1.6E-14 115.1 20.4 217 75-331 1059-1313(1630)
131 2xcb_A PCRH, regulatory protei 99.2 7.8E-11 2.7E-15 92.3 11.4 97 100-225 17-115 (142)
132 3gw4_A Uncharacterized protein 99.2 3.2E-10 1.1E-14 93.4 15.5 154 75-261 2-176 (203)
133 2lni_A Stress-induced-phosphop 99.2 2.9E-10 9.9E-15 86.8 14.0 114 136-278 15-132 (133)
134 2e2e_A Formate-dependent nitri 99.2 8.9E-11 3E-15 95.2 11.2 118 172-297 22-148 (177)
135 2e2e_A Formate-dependent nitri 99.2 1.7E-10 5.7E-15 93.6 12.6 121 75-226 20-145 (177)
136 4b4t_Q 26S proteasome regulato 99.2 8.3E-10 2.8E-14 102.1 18.8 202 65-293 4-245 (434)
137 2fbn_A 70 kDa peptidylprolyl i 99.2 2.5E-11 8.7E-16 100.6 7.7 154 118-284 17-176 (198)
138 1elw_A TPR1-domain of HOP; HOP 99.2 8.3E-10 2.8E-14 82.1 14.7 110 100-238 3-116 (118)
139 3upv_A Heat shock protein STI1 99.2 5.5E-10 1.9E-14 85.2 13.9 96 191-294 3-102 (126)
140 2xcb_A PCRH, regulatory protei 99.2 1.6E-10 5.5E-15 90.5 11.1 80 210-293 32-115 (142)
141 2vyi_A SGTA protein; chaperone 99.2 8.8E-10 3E-14 83.4 14.7 112 100-240 11-126 (131)
142 3sz7_A HSC70 cochaperone (SGT) 99.2 5.4E-10 1.8E-14 89.5 14.0 93 193-293 12-108 (164)
143 3q49_B STIP1 homology and U bo 99.2 6.9E-10 2.4E-14 85.6 14.0 99 98-225 6-106 (137)
144 2dba_A Smooth muscle cell asso 99.2 1.8E-09 6.3E-14 83.9 16.4 112 99-239 26-144 (148)
145 2vyi_A SGTA protein; chaperone 99.2 9.1E-10 3.1E-14 83.4 14.1 115 136-279 11-129 (131)
146 1na0_A Designed protein CTPR3; 99.2 1.6E-09 5.3E-14 81.3 15.3 110 101-239 9-122 (125)
147 2ooe_A Cleavage stimulation fa 99.2 1.4E-09 4.8E-14 103.9 18.5 179 122-329 255-456 (530)
148 1hxi_A PEX5, peroxisome target 99.1 3.1E-10 1.1E-14 86.6 10.8 93 104-225 20-114 (121)
149 3rkv_A Putative peptidylprolyl 99.1 5.1E-10 1.8E-14 89.5 12.6 110 100-238 10-142 (162)
150 1kt0_A FKBP51, 51 kDa FK506-bi 99.1 4.1E-11 1.4E-15 112.8 6.0 155 118-286 247-407 (457)
151 2fbn_A 70 kDa peptidylprolyl i 99.1 9.6E-10 3.3E-14 90.9 13.7 112 100-240 37-168 (198)
152 3ro3_A PINS homolog, G-protein 99.1 1.9E-09 6.6E-14 84.5 14.9 142 101-293 9-158 (164)
153 3dra_A Protein farnesyltransfe 99.1 1.1E-08 3.8E-13 90.7 21.2 206 119-330 47-291 (306)
154 3ro3_A PINS homolog, G-protein 99.1 3.1E-09 1.1E-13 83.3 15.9 141 138-327 10-158 (164)
155 2kck_A TPR repeat; tetratricop 99.1 7.1E-10 2.4E-14 81.7 11.4 98 99-225 4-106 (112)
156 1na0_A Designed protein CTPR3; 99.1 4E-09 1.4E-13 79.0 15.2 109 137-274 9-121 (125)
157 2c2l_A CHIP, carboxy terminus 99.1 3.4E-10 1.2E-14 99.5 10.4 96 67-168 6-103 (281)
158 1elr_A TPR2A-domain of HOP; HO 99.1 1.5E-09 5.1E-14 82.3 12.6 113 101-239 4-123 (131)
159 2hr2_A Hypothetical protein; a 99.1 1.4E-09 4.7E-14 86.5 12.2 102 100-225 10-131 (159)
160 1kt0_A FKBP51, 51 kDa FK506-bi 99.1 1.5E-09 5E-14 102.2 14.5 120 100-252 267-405 (457)
161 1b89_A Protein (clathrin heavy 99.1 1.1E-10 3.9E-15 107.6 6.1 216 77-331 15-240 (449)
162 2xev_A YBGF; tetratricopeptide 99.1 2.4E-09 8.2E-14 81.5 12.8 95 102-225 3-105 (129)
163 1elw_A TPR1-domain of HOP; HOP 99.1 7.3E-09 2.5E-13 76.8 15.0 95 137-260 4-100 (118)
164 3q49_B STIP1 homology and U bo 99.1 3.8E-09 1.3E-13 81.3 13.6 100 189-296 6-109 (137)
165 2if4_A ATFKBP42; FKBP-like, al 99.0 7.9E-10 2.7E-14 99.8 10.6 31 101-135 179-209 (338)
166 1ihg_A Cyclophilin 40; ppiase 99.0 3.2E-09 1.1E-13 97.1 14.6 111 101-240 223-353 (370)
167 3rkv_A Putative peptidylprolyl 99.0 3.8E-09 1.3E-13 84.4 13.2 100 191-298 10-131 (162)
168 1hxi_A PEX5, peroxisome target 99.0 1.8E-09 6.1E-14 82.3 10.0 95 194-296 19-117 (121)
169 1wao_1 Serine/threonine protei 99.0 1.1E-10 3.8E-15 110.5 3.5 121 139-288 8-134 (477)
170 1elr_A TPR2A-domain of HOP; HO 99.0 1.3E-08 4.4E-13 77.0 14.2 110 192-309 4-125 (131)
171 3dss_A Geranylgeranyl transfer 99.0 6.4E-08 2.2E-12 86.6 20.8 222 75-302 39-313 (331)
172 2dba_A Smooth muscle cell asso 99.0 2.4E-08 8.3E-13 77.4 15.4 109 190-306 26-143 (148)
173 1wao_1 Serine/threonine protei 99.0 3.6E-10 1.2E-14 106.9 5.6 123 101-256 6-134 (477)
174 2kck_A TPR repeat; tetratricop 99.0 3.4E-09 1.2E-13 78.0 9.8 99 189-295 3-108 (112)
175 2hr2_A Hypothetical protein; a 99.0 3.4E-09 1.1E-13 84.3 10.2 98 191-296 10-134 (159)
176 2xev_A YBGF; tetratricopeptide 99.0 6.7E-09 2.3E-13 79.0 11.5 96 192-295 2-107 (129)
177 3mv2_B Coatomer subunit epsilo 99.0 4E-08 1.4E-12 86.8 17.8 177 124-331 85-286 (310)
178 1ihg_A Cyclophilin 40; ppiase 99.0 5.2E-09 1.8E-13 95.7 12.6 134 136-284 222-361 (370)
179 3k9i_A BH0479 protein; putativ 98.9 2.7E-09 9.1E-14 80.5 8.6 88 118-230 3-97 (117)
180 2if4_A ATFKBP42; FKBP-like, al 98.9 2.5E-09 8.4E-14 96.6 9.8 132 191-331 178-332 (338)
181 3k9i_A BH0479 protein; putativ 98.9 1.8E-09 6.3E-14 81.4 4.9 89 78-170 3-94 (117)
182 4b4t_Q 26S proteasome regulato 98.8 2.6E-07 8.9E-12 85.2 19.2 198 101-325 4-243 (434)
183 2l6j_A TPR repeat-containing p 98.8 3.9E-09 1.3E-13 78.0 4.6 86 100-204 3-90 (111)
184 1zu2_A Mitochondrial import re 98.8 1.4E-08 4.6E-13 80.6 7.9 99 79-186 16-137 (158)
185 3dss_A Geranylgeranyl transfer 98.8 2.3E-06 8E-11 76.4 23.4 179 81-265 90-308 (331)
186 1zu2_A Mitochondrial import re 98.8 1.9E-08 6.3E-13 79.8 8.5 88 119-227 16-122 (158)
187 3q7a_A Farnesyltransferase alp 98.8 4E-07 1.4E-11 81.8 18.3 216 80-301 69-340 (349)
188 1dce_A Protein (RAB geranylger 98.8 4E-07 1.4E-11 87.8 18.7 170 82-282 46-244 (567)
189 1na3_A Designed protein CTPR2; 98.8 1.1E-07 3.7E-12 67.4 11.1 80 100-204 8-89 (91)
190 1dce_A Protein (RAB geranylger 98.8 2.2E-07 7.4E-12 89.6 16.6 165 119-311 43-241 (567)
191 2kat_A Uncharacterized protein 98.7 2.4E-07 8.3E-12 69.1 12.4 77 123-224 3-81 (115)
192 3q7a_A Farnesyltransferase alp 98.7 2.5E-06 8.5E-11 76.7 20.3 170 119-312 68-258 (349)
193 1na3_A Designed protein CTPR2; 98.6 3.7E-07 1.3E-11 64.5 11.1 79 136-239 8-88 (91)
194 3ma5_A Tetratricopeptide repea 98.6 3.2E-07 1.1E-11 66.9 10.7 62 100-165 6-69 (100)
195 3ma5_A Tetratricopeptide repea 98.6 7.7E-08 2.6E-12 70.3 7.1 74 68-147 10-87 (100)
196 2kat_A Uncharacterized protein 98.6 8.6E-07 2.9E-11 66.0 12.9 76 214-293 3-82 (115)
197 2l6j_A TPR repeat-containing p 98.6 5.9E-07 2E-11 65.9 11.5 79 136-239 3-89 (111)
198 3mv2_B Coatomer subunit epsilo 98.6 2.5E-06 8.7E-11 75.2 15.9 180 84-298 85-287 (310)
199 4e6h_A MRNA 3'-END-processing 98.5 4.1E-06 1.4E-10 82.2 18.1 131 193-330 435-573 (679)
200 2v5f_A Prolyl 4-hydroxylase su 98.5 1.1E-06 3.7E-11 64.8 10.8 65 100-168 4-77 (104)
201 3n71_A Histone lysine methyltr 98.4 3.7E-06 1.3E-10 79.4 14.2 130 71-224 315-463 (490)
202 3n71_A Histone lysine methyltr 98.4 4.4E-06 1.5E-10 78.9 13.8 87 118-224 322-421 (490)
203 2kc7_A BFR218_protein; tetratr 98.3 1.2E-06 3.9E-11 63.3 5.9 61 105-169 4-67 (99)
204 2kc7_A BFR218_protein; tetratr 98.3 2.3E-06 7.7E-11 61.7 7.0 87 232-330 4-93 (99)
205 2v5f_A Prolyl 4-hydroxylase su 98.2 1E-05 3.6E-10 59.4 10.5 74 230-307 7-91 (104)
206 1pc2_A Mitochondria fission pr 98.1 7.8E-05 2.7E-09 58.4 12.5 100 210-310 12-119 (152)
207 3ly7_A Transcriptional activat 98.0 0.00011 3.6E-09 66.2 14.8 140 151-317 213-361 (372)
208 3qww_A SET and MYND domain-con 98.0 1.9E-05 6.4E-10 73.4 9.8 87 118-224 311-410 (433)
209 3bee_A Putative YFRE protein; 98.0 3.2E-05 1.1E-09 55.6 8.9 71 98-169 3-75 (93)
210 3qww_A SET and MYND domain-con 98.0 5.4E-05 1.8E-09 70.3 11.4 88 75-166 308-411 (433)
211 4e6h_A MRNA 3'-END-processing 97.9 0.0012 4.1E-08 64.8 20.3 200 83-295 327-572 (679)
212 4g26_A Pentatricopeptide repea 97.8 0.005 1.7E-07 58.2 22.9 156 118-295 39-206 (501)
213 3u64_A Protein TP_0956; tetrat 97.8 0.00013 4.3E-09 63.3 10.6 106 98-226 149-270 (301)
214 3u64_A Protein TP_0956; tetrat 97.8 0.00022 7.6E-09 61.8 11.3 108 189-296 149-272 (301)
215 3qwp_A SET and MYND domain-con 97.8 0.00017 5.7E-09 67.0 11.4 87 118-224 300-399 (429)
216 1pc2_A Mitochondria fission pr 97.8 0.00015 5.2E-09 56.7 9.2 68 98-169 29-103 (152)
217 3ly7_A Transcriptional activat 97.7 0.0008 2.7E-08 60.5 14.6 151 90-265 185-343 (372)
218 3bee_A Putative YFRE protein; 97.7 0.00021 7.3E-09 51.2 8.6 70 226-296 4-75 (93)
219 3qwp_A SET and MYND domain-con 97.7 0.00012 4.3E-09 67.8 8.8 94 69-166 291-400 (429)
220 4g26_A Pentatricopeptide repea 97.5 0.0096 3.3E-07 56.2 19.5 167 136-326 24-203 (501)
221 1nzn_A CGI-135 protein, fissio 97.3 0.0051 1.8E-07 46.3 11.7 99 212-311 17-123 (126)
222 2uy1_A Cleavage stimulation fa 97.0 0.085 2.9E-06 49.6 19.6 45 177-225 196-242 (493)
223 3o48_A Mitochondria fission 1 96.6 0.017 5.9E-07 43.6 9.3 85 227-312 39-128 (134)
224 3ffl_A Anaphase-promoting comp 96.5 0.019 6.4E-07 45.2 9.7 92 68-163 23-148 (167)
225 2uy1_A Cleavage stimulation fa 96.4 0.078 2.7E-06 49.8 15.3 161 121-290 195-380 (493)
226 1nzn_A CGI-135 protein, fissio 96.3 0.059 2E-06 40.4 10.8 70 99-169 33-106 (126)
227 1y8m_A FIS1; mitochondria, unk 96.2 0.049 1.7E-06 41.7 10.1 85 226-311 37-126 (144)
228 3ffl_A Anaphase-promoting comp 95.5 0.067 2.3E-06 42.1 8.4 117 118-238 33-165 (167)
229 3mkq_A Coatomer beta'-subunit; 95.1 0.31 1.1E-05 48.0 13.9 84 189-289 678-761 (814)
230 4h7y_A Dual specificity protei 95.0 0.096 3.3E-06 40.5 7.7 119 186-313 7-149 (161)
231 1y8m_A FIS1; mitochondria, unk 93.9 0.41 1.4E-05 36.6 8.9 71 98-169 36-109 (144)
232 3o48_A Mitochondria fission 1 93.8 0.26 9E-06 37.2 7.5 72 98-170 37-111 (134)
233 1ya0_A SMG-7 transcript varian 93.5 0.34 1.2E-05 45.4 9.6 63 103-169 154-218 (497)
234 3mkq_A Coatomer beta'-subunit; 93.5 2.6 8.8E-05 41.3 16.7 80 119-218 666-745 (814)
235 3txn_A 26S proteasome regulato 93.2 4.3 0.00015 36.7 16.0 90 195-292 102-209 (394)
236 1ya0_A SMG-7 transcript varian 93.0 0.51 1.7E-05 44.2 9.8 76 139-239 154-231 (497)
237 3mkq_B Coatomer subunit alpha; 92.7 3.1 0.0001 33.0 13.9 42 119-163 19-60 (177)
238 4h7y_A Dual specificity protei 91.2 1.1 3.8E-05 34.6 8.1 100 98-227 10-125 (161)
239 3mkq_B Coatomer subunit alpha; 91.2 4.7 0.00016 32.0 14.1 83 190-289 32-114 (177)
240 4ady_A RPN2, 26S proteasome re 90.8 15 0.00051 37.1 18.2 68 90-165 365-439 (963)
241 1wy6_A Hypothetical protein ST 87.7 2.9 9.8E-05 31.8 7.8 63 76-144 102-164 (172)
242 2wpv_A GET4, UPF0363 protein Y 84.3 20 0.00068 31.1 18.1 64 65-148 13-80 (312)
243 4ae4_A Ubiquitin-associated pr 83.8 11 0.00037 27.7 9.4 36 127-163 11-46 (118)
244 3kae_A CDC27, possible protein 82.0 11 0.00039 29.7 9.1 139 69-227 6-145 (242)
245 3lpz_A GET4 (YOR164C homolog); 78.0 35 0.0012 29.9 18.7 62 66-147 13-81 (336)
246 2w2u_A Hypothetical P60 katani 77.8 2.2 7.7E-05 29.2 3.6 31 154-188 17-47 (83)
247 2v6y_A AAA family ATPase, P60 77.1 2.4 8.2E-05 29.0 3.6 31 154-188 9-39 (83)
248 2w2u_A Hypothetical P60 katani 75.7 5.4 0.00018 27.2 5.0 32 248-292 16-47 (83)
249 4b4t_R RPN7, 26S proteasome re 75.4 7.1 0.00024 35.6 7.4 95 191-293 130-237 (429)
250 4fhn_B Nucleoporin NUP120; pro 74.8 42 0.0014 34.8 13.7 180 99-293 840-1050(1139)
251 2v6y_A AAA family ATPase, P60 74.5 5.9 0.0002 27.0 5.0 32 248-292 8-39 (83)
252 3bge_A Predicted ATPase; struc 74.0 28 0.00097 27.9 9.5 78 124-201 10-88 (201)
253 2wpv_A GET4, UPF0363 protein Y 73.9 44 0.0015 29.0 14.9 45 121-165 13-61 (312)
254 1wy6_A Hypothetical protein ST 73.9 27 0.00092 26.5 8.9 44 263-306 124-167 (172)
255 3spa_A Mtrpol, DNA-directed RN 73.7 39 0.0013 34.6 12.5 120 195-325 130-259 (1134)
256 4b4t_P 26S proteasome regulato 73.3 55 0.0019 29.8 13.3 204 58-293 10-247 (445)
257 1qsa_A Protein (soluble lytic 71.8 72 0.0025 30.5 18.3 77 212-293 268-348 (618)
258 2ff4_A Probable regulatory pro 70.7 15 0.00053 32.8 8.4 60 229-292 172-233 (388)
259 4gns_B Protein CSD3, chitin bi 69.8 33 0.0011 33.7 10.9 116 78-222 261-397 (754)
260 1wfd_A Hypothetical protein 15 69.8 4.4 0.00015 28.3 3.6 15 150-164 28-42 (93)
261 4gns_B Protein CSD3, chitin bi 68.0 35 0.0012 33.6 10.7 45 246-290 351-397 (754)
262 1wfd_A Hypothetical protein 15 67.4 12 0.0004 26.1 5.3 33 247-292 11-43 (93)
263 3ctd_A Putative ATPase, AAA fa 65.7 32 0.0011 27.9 8.2 80 122-201 36-116 (213)
264 4b4t_R RPN7, 26S proteasome re 64.0 9.5 0.00032 34.8 5.6 97 101-224 131-236 (429)
265 2v6x_A Vacuolar protein sortin 63.4 7.2 0.00024 26.6 3.6 13 151-163 27-39 (85)
266 2cpt_A SKD1 protein, vacuolar 62.7 6.2 0.00021 28.9 3.3 14 151-164 32-45 (117)
267 3spa_A Mtrpol, DNA-directed RN 61.0 27 0.00094 35.7 8.5 92 230-325 129-228 (1134)
268 4a5x_A MITD1, MIT domain-conta 60.9 15 0.00052 25.1 4.9 34 247-293 12-45 (86)
269 2r9g_A AAA ATPase, central reg 60.8 32 0.0011 27.7 7.3 79 122-201 15-94 (204)
270 3kae_A CDC27, possible protein 60.5 61 0.0021 25.6 9.2 83 75-168 43-145 (242)
271 2ff4_A Probable regulatory pro 59.1 40 0.0014 30.0 8.8 57 104-164 174-232 (388)
272 2v6x_A Vacuolar protein sortin 59.0 18 0.00063 24.5 5.0 33 247-292 9-41 (85)
273 4a5x_A MITD1, MIT domain-conta 58.7 9.2 0.00031 26.3 3.4 16 149-164 28-43 (86)
274 2cpt_A SKD1 protein, vacuolar 58.6 14 0.00047 27.0 4.6 32 248-292 15-46 (117)
275 4a1g_A Mitotic checkpoint seri 55.5 67 0.0023 24.5 9.9 44 124-167 84-131 (152)
276 4aez_C MAD3, mitotic spindle c 52.9 93 0.0032 25.4 10.4 81 81-167 96-180 (223)
277 4ady_A RPN2, 26S proteasome re 52.9 2E+02 0.0067 29.1 16.5 91 230-325 457-551 (963)
278 4gq4_A Menin; tumor suppressor 52.6 63 0.0021 29.2 8.4 73 92-166 253-332 (489)
279 3lpz_A GET4 (YOR164C homolog); 52.2 1.2E+02 0.0041 26.5 17.0 47 118-164 9-62 (336)
280 4gq2_M Nucleoporin NUP120; bet 50.7 32 0.0011 34.8 7.3 30 100-133 839-868 (950)
281 3re2_A Predicted protein; meni 50.0 1.4E+02 0.0047 26.5 10.2 67 98-166 252-325 (472)
282 3o10_A Sacsin; all-helical dom 49.9 36 0.0012 25.5 5.8 12 247-258 5-16 (141)
283 3txn_A 26S proteasome regulato 48.8 1.5E+02 0.0051 26.5 16.4 118 81-224 75-209 (394)
284 2wvi_A Mitotic checkpoint seri 48.1 94 0.0032 24.0 9.3 44 124-167 79-126 (164)
285 4b4t_P 26S proteasome regulato 44.9 1.1E+02 0.0037 27.8 9.4 95 103-224 139-246 (445)
286 2dl1_A Spartin; SPG20, MIT, st 42.1 22 0.00077 25.8 3.3 14 151-164 36-49 (116)
287 2wb7_A PT26-6P; extra chromoso 41.7 2.2E+02 0.0074 26.4 11.7 12 212-223 455-466 (526)
288 1zbp_A Hypothetical protein VP 41.6 66 0.0023 27.2 6.6 57 73-135 5-61 (273)
289 2dl1_A Spartin; SPG20, MIT, st 40.3 45 0.0016 24.2 4.7 16 277-292 35-50 (116)
290 3t5x_A PCI domain-containing p 40.2 33 0.0011 27.6 4.5 28 230-261 16-43 (203)
291 2crb_A Nuclear receptor bindin 35.0 64 0.0022 22.3 4.5 26 140-165 18-43 (97)
292 1qsa_A Protein (soluble lytic 34.4 3.1E+02 0.011 26.1 20.8 49 174-226 299-349 (618)
293 3re2_A Predicted protein; meni 34.3 1E+02 0.0034 27.4 6.6 29 264-292 296-324 (472)
294 2ymb_A MITD1, MIT domain-conta 33.3 8.9 0.00031 32.2 0.0 35 245-292 17-51 (257)
295 3eab_A Spastin; spastin, MIT, 33.1 15 0.00051 25.4 1.1 13 174-186 33-45 (89)
296 2crb_A Nuclear receptor bindin 31.1 1.3E+02 0.0045 20.8 5.9 24 269-292 20-43 (97)
297 4b4t_S RPN3, 26S proteasome re 30.0 1.2E+02 0.0043 28.2 7.1 79 101-183 231-317 (523)
298 3o10_A Sacsin; all-helical dom 29.4 1.1E+02 0.0037 22.8 5.6 44 116-165 1-44 (141)
299 2rpa_A Katanin P60 ATPase-cont 29.0 36 0.0012 22.8 2.4 26 141-166 16-41 (78)
300 3t5x_A PCI domain-containing p 28.1 65 0.0022 25.8 4.4 30 101-134 14-43 (203)
301 4gq4_A Menin; tumor suppressor 27.4 1.5E+02 0.005 26.9 6.6 64 227-292 261-331 (489)
302 3u84_A Menin; MLL, JUND, ledgf 26.9 1.5E+02 0.0051 26.9 6.6 32 191-224 276-307 (550)
303 3ax2_A Mitochondrial import re 26.4 91 0.0031 20.5 4.0 26 268-293 21-46 (73)
304 1zbp_A Hypothetical protein VP 25.7 3E+02 0.01 23.2 8.7 48 247-294 12-61 (273)
305 4fhn_B Nucleoporin NUP120; pro 25.5 5.6E+02 0.019 26.3 14.1 86 135-224 840-927 (1139)
306 2wvi_A Mitotic checkpoint seri 25.4 1.8E+02 0.0061 22.4 6.2 33 99-135 94-126 (164)
307 4gq2_M Nucleoporin NUP120; bet 25.3 3.3E+02 0.011 27.4 9.9 100 118-224 823-925 (950)
308 2cos_A Serine/threonine protei 24.6 1.3E+02 0.0043 18.5 4.0 38 126-163 11-48 (54)
309 2e2a_A Protein (enzyme IIA); h 24.3 78 0.0027 22.5 3.6 37 128-164 11-47 (105)
310 1wcr_A PTS system, N, N'-diace 24.2 85 0.0029 22.2 3.8 37 128-164 9-45 (103)
311 2ynq_A ESSB; membrane protein, 23.9 2.1E+02 0.0072 21.9 6.2 76 209-288 21-97 (161)
312 1fs1_A SKP2 F-BOX, cyclin A/CD 22.6 78 0.0027 18.6 3.0 38 60-97 8-45 (53)
313 3esl_A Checkpoint serine/threo 22.6 3E+02 0.01 22.0 8.7 65 119-185 93-161 (202)
314 3u84_A Menin; MLL, JUND, ledgf 22.5 4.4E+02 0.015 23.9 11.3 67 98-166 274-347 (550)
315 3k1s_A PTS system, cellobiose- 21.6 1E+02 0.0035 22.0 3.8 37 128-164 13-49 (109)
316 2crn_A Ubash3A protein; compac 21.5 1.6E+02 0.0056 18.6 4.5 36 128-163 13-48 (64)
317 3esl_A Checkpoint serine/threo 20.7 3.3E+02 0.011 21.8 8.7 38 153-190 95-145 (202)
318 4a1g_A Mitotic checkpoint seri 20.5 2.4E+02 0.0082 21.4 6.0 65 67-135 49-131 (152)
No 1
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=100.00 E-value=1.1e-32 Score=260.51 Aligned_cols=246 Identities=17% Similarity=0.167 Sum_probs=222.2
Q ss_pred chHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHH--HHHHHHHhcC----CC
Q 020091 79 PQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAM--VDAGLMYWEM----DK 152 (331)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~--~~lg~~~~~~----~~ 152 (331)
+.+.++......+.+.+. .+++.+++.||.+|.. .|+..++++|+.||+++++.|++.+. ++||.+|..+ +|
T Consensus 155 ~~~~~~~~~a~~~~~~a~-~~~~~a~~~Lg~~~~~-~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAAL-NTTDICYVELATVYQK-KQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp TCGGGGHHHHHHHHHHHT-TTCTTHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCC
T ss_pred CCcccCHHHHHHHHHHHH-cCCHHHHHHHHHHHHH-cCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCC
Confidence 334444444455555544 5788899999999998 56666999999999999999988877 9999999887 89
Q ss_pred HHHHHHHHHHHHHcCCCCC------------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 020091 153 KEAAISLYRQAAVLGDPAA------------QPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYL 220 (331)
Q Consensus 153 ~~~A~~~~~~a~~~~~~~~------------~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~ 220 (331)
+++|+.+|++++ .+++.+ ..+|+++|+.||+++++.|++.++++||.+|..|.|+.+|+++|+.||+
T Consensus 233 ~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 233 EKTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 999999999999 555444 5789999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCH
Q 020091 221 RAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAGET 296 (331)
Q Consensus 221 ~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~~~~~A~~~~~~A~~~~~~ 296 (331)
+|+ .|++.++++||.+|..|.|+++|+++|+.||++|++.|++.++++||.+|.. .+|+++|+.||++|++.|+.
T Consensus 312 ~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 312 KAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp TTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred HHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 999 9999999999999999999999999999999999999999999999999875 56999999999999999999
Q ss_pred HHHHHHHHHHhhhchhcHHHHHHHHHhhhcCC
Q 020091 297 AADHVKNVILQQLSATSRDRAMLVVDSWRAMP 328 (331)
Q Consensus 297 ~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~ 328 (331)
.+...+..+...+++.++.++..++++|++.+
T Consensus 391 ~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 391 EANDLATQLEAPLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999998653
No 2
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=100.00 E-value=3e-31 Score=252.70 Aligned_cols=242 Identities=24% Similarity=0.297 Sum_probs=133.3
Q ss_pred CchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhc----CCCH
Q 020091 78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE----MDKK 153 (331)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~----~~~~ 153 (331)
.+++.+|. .+++.+.+.+++.+++.||.+|..|.|+.+|+++|+.||++|++.|++.++++||.+|.. .+++
T Consensus 56 ~~~~~~A~----~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~ 131 (490)
T 2xm6_A 56 TKDLTQAM----DWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDK 131 (490)
T ss_dssp CCCHHHHH----HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcCHHHHH----HHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 45555553 333333334566666666666666666666666666666666666666666666666665 3566
Q ss_pred HHHHHHHHHHHHcCCCCC-------------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 020091 154 EAAISLYRQAAVLGDPAA-------------QPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYL 220 (331)
Q Consensus 154 ~~A~~~~~~a~~~~~~~~-------------~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~ 220 (331)
++|+.+|+++++.+++.+ ..+|+++|+.+|+++++.+++.++++||.+|..|.|+.+|+++|+.||+
T Consensus 132 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 211 (490)
T 2xm6_A 132 AESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYR 211 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHH
Confidence 666666666665554333 2455555555555555555555555555555555555555555555555
Q ss_pred HHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCH
Q 020091 221 RAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAGET 296 (331)
Q Consensus 221 ~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~~~~~A~~~~~~A~~~~~~ 296 (331)
++++.|++.+++.||.+|..|.|+.+++++|+.||+++++.+++.++++||.+|.. .+++++|+.+|++|++.|+.
T Consensus 212 ~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~ 291 (490)
T 2xm6_A 212 KSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNS 291 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCH
T ss_pred HHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 55555555555555555555555555555555555555555555555555555544 45555555555555555555
Q ss_pred HHHHHHHHHHhhh---chhcHHHHHHHHHh
Q 020091 297 AADHVKNVILQQL---SATSRDRAMLVVDS 323 (331)
Q Consensus 297 ~a~~~l~~~~~~l---~~~~~~~a~~~~~~ 323 (331)
.+.++++.++... ...+.++|...+++
T Consensus 292 ~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 292 DGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 5555555544432 12344444444444
No 3
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=100.00 E-value=5.9e-31 Score=250.67 Aligned_cols=245 Identities=17% Similarity=0.183 Sum_probs=216.6
Q ss_pred CchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhc----CCCH
Q 020091 78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE----MDKK 153 (331)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~----~~~~ 153 (331)
.+++.+| ..+++++.+.+++.+++.||.+|..|.|+.+|+++|+.||++|++.|++.++++||.+|.. .+++
T Consensus 92 ~~~~~~A----~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~ 167 (490)
T 2xm6_A 92 PQDYAQA----VIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDY 167 (490)
T ss_dssp CCCHHHH----HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCCHHHH----HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 6778888 4555666667899999999999999999999999999999999999999999999999988 5799
Q ss_pred HHHHHHHHHHHHcCCCCC-------------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 020091 154 EAAISLYRQAAVLGDPAA-------------QPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYL 220 (331)
Q Consensus 154 ~~A~~~~~~a~~~~~~~~-------------~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~ 220 (331)
++|+.+|+++++.+++.+ ..+++++|+.||+++++.+++.++++||.+|..|.|+.+|+++|+.||+
T Consensus 168 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 168 VMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 999999999999876554 3789999999999999999999999999999999888999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCC
Q 020091 221 RAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTE-----GEMMKAVVYLELATRAGE 295 (331)
Q Consensus 221 ~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~-----~~~~~A~~~~~~A~~~~~ 295 (331)
++++.|++.++++||.+|..|.|+.+|.++|+.||+++++.+++.+++.||.+|... +++++|+.+|++|++.++
T Consensus 248 ~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~ 327 (490)
T 2xm6_A 248 QSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD 327 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999888899999999999999999999999999998887 899999999999999999
Q ss_pred HHHHHHHHHHHhhhc-hhcHHHHHHHHHhhhc
Q 020091 296 TAADHVKNVILQQLS-ATSRDRAMLVVDSWRA 326 (331)
Q Consensus 296 ~~a~~~l~~~~~~l~-~~~~~~a~~~~~~~~~ 326 (331)
..+.++++.++.... ..+.++|...+++..+
T Consensus 328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 999999998887642 4477888888887654
No 4
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.98 E-value=1.2e-30 Score=229.10 Aligned_cols=239 Identities=19% Similarity=0.231 Sum_probs=216.6
Q ss_pred HHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 020091 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLM 146 (331)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~ 146 (331)
..+......+..+++++|...+.+..+ .+++.+++.||.+|..|.|+.+++++|+.+|+++++.+++.++++||.+
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 83 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNL 83 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344455556677899999766655554 6789999999999999999999999999999999999999999999999
Q ss_pred Hhc----CCCHHHHHHHHHHHHHcCCCCC---------C----ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCC
Q 020091 147 YWE----MDKKEAAISLYRQAAVLGDPAA---------Q----PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVD 209 (331)
Q Consensus 147 ~~~----~~~~~~A~~~~~~a~~~~~~~~---------~----~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~ 209 (331)
|.. .+++++|+.+|+++++.+++.+ . .+++++|+.+|+++++.+++.++++||.+|..|.++.
T Consensus 84 ~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~ 163 (273)
T 1ouv_A 84 YYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTP 163 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC
T ss_pred HhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCC
Confidence 999 8999999999999999875544 3 8999999999999999999999999999999998889
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc----cCCHHHHHH
Q 020091 210 FNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT----EGEMMKAVV 285 (331)
Q Consensus 210 ~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~~~~~A~~ 285 (331)
+++++|+.+|+++++.+++.+++++|.+|..|.++.+++++|+.+|+++++.+++.++++||.+|.. .+++++|+.
T Consensus 164 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~ 243 (273)
T 1ouv_A 164 KDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIE 243 (273)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHH
Confidence 9999999999999999999999999999999998899999999999999999999999999999999 999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhh
Q 020091 286 YLELATRAGETAADHVKNVILQQL 309 (331)
Q Consensus 286 ~~~~A~~~~~~~a~~~l~~~~~~l 309 (331)
+|++|++.++..+..++..+....
T Consensus 244 ~~~~a~~~~~~~a~~~l~~~~~~~ 267 (273)
T 1ouv_A 244 NFKKGCKLGAKGACDILKQLKIKV 267 (273)
T ss_dssp HHHHHHHHTCHHHHHHHHTCCCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999998887665433
No 5
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.98 E-value=7.4e-31 Score=222.93 Aligned_cols=194 Identities=19% Similarity=0.103 Sum_probs=176.8
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 020091 89 KSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGD 168 (331)
Q Consensus 89 ~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~ 168 (331)
..+++++++.+++.+++.||.+|.. .+|+++|+.||++|++.|++.++++||.+|..++
T Consensus 6 ~~~~~~aa~~g~~~a~~~lg~~~~~----~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g----------------- 64 (212)
T 3rjv_A 6 GSQYQQQAEAGDRRAQYYLADTWVS----SGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNP----------------- 64 (212)
T ss_dssp THHHHHHHHTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSST-----------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-----------------
Confidence 4567777778999999999999999 8999999999999999999999999999997732
Q ss_pred CCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC----HHHHHHHHHHHhcCCCc
Q 020091 169 PAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY----VRAMYNTSLCYSFGEGL 244 (331)
Q Consensus 169 ~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~----~~a~~~lg~~y~~g~g~ 244 (331)
+.+|+++|+.||+++++.+++.++++||.+|..|.|+.+|+++|++||++|++.|+ +.++++||.+|..|.|+
T Consensus 65 ---~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~ 141 (212)
T 3rjv_A 65 ---QQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHG 141 (212)
T ss_dssp ---TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSS
T ss_pred ---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCC
Confidence 44567777777777777789999999999999999999999999999999999999 99999999999999999
Q ss_pred cccHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcc------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020091 245 PLSHRQARKWMKRAADC-GHGKAQLEHGLGLFTE------GEMMKAVVYLELATRAGETAADHVKNVIL 306 (331)
Q Consensus 245 ~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~~~------~~~~~A~~~~~~A~~~~~~~a~~~l~~~~ 306 (331)
++|+++|+.||++|++. +++.++++||.+|... .|+++|+.||++|++.|+..++.++..+.
T Consensus 142 ~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~~l~ 210 (212)
T 3rjv_A 142 PEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFDRIS 210 (212)
T ss_dssp SCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 99999999999999998 8999999999999753 39999999999999999999999887664
No 6
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.97 E-value=2.4e-29 Score=220.79 Aligned_cols=229 Identities=14% Similarity=0.148 Sum_probs=211.9
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHcCCCCC-
Q 020091 97 PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE----MDKKEAAISLYRQAAVLGDPAA- 171 (331)
Q Consensus 97 ~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~a~~~~~~~~- 171 (331)
+.+++.+++.+|.+|.. .+++++|+.+|+++++.+++.++++||.+|.. .+++++|+.+|+++++.+++.+
T Consensus 2 ~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYK----EKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCChHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHH
Confidence 45789999999999999 79999999999999999999999999999999 8999999999999999975544
Q ss_pred --------C----ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Q 020091 172 --------Q----PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYS 239 (331)
Q Consensus 172 --------~----~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~ 239 (331)
. .+++++|+.+|+++++.+++.++++||.+|..|.++.+++++|+.+|++|++.+++.+++++|.+|.
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh--chhc
Q 020091 240 FGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAGETAADHVKNVILQQL--SATS 313 (331)
Q Consensus 240 ~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l--~~~~ 313 (331)
.|.++.+++++|+.+|+++++.+++.++++||.+|.. .+++++|+.+|+++++.++..+..+++.++... ..++
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~ 237 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRN 237 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccC
Confidence 9988899999999999999999999999999999999 999999999999999999999999999998752 1567
Q ss_pred HHHHHHHHHhhhcCCC
Q 020091 314 RDRAMLVVDSWRAMPS 329 (331)
Q Consensus 314 ~~~a~~~~~~~~~~~~ 329 (331)
.++|...+++..+..|
T Consensus 238 ~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 238 EKQAIENFKKGCKLGA 253 (273)
T ss_dssp STTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCC
Confidence 7889999988776554
No 7
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.96 E-value=3.2e-29 Score=236.62 Aligned_cols=239 Identities=15% Similarity=0.071 Sum_probs=197.9
Q ss_pred hHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH---------------------------
Q 020091 80 QLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGA--------------------------- 132 (331)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~--------------------------- 132 (331)
++.+|. .+++++.+.+++.+++.||.+|..|.++..+ .++++++.+++
T Consensus 89 ~~~~A~----~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~-~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 89 EHHEAE----SLLKKAFANGEGNTLIPLAMLYLQYPHSFPN-VNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp HHHHHH----HHHHHHHHTTCSSCHHHHHHHHHHCGGGCTT-CCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHH
T ss_pred CHHHHH----HHHHHHHHCCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHH
Confidence 555663 4444444456666777777777666555444 44555555444
Q ss_pred --------hCCCHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCCCC---------------CccCHHHHHHHHHHH
Q 020091 133 --------ARGSTLAMVDAGLMYWEMD---KKEAAISLYRQAAVLGDPAA---------------QPANAEEAVKLLYQA 186 (331)
Q Consensus 133 --------~~~~~~a~~~lg~~~~~~~---~~~~A~~~~~~a~~~~~~~~---------------~~~~~~~A~~~~~~a 186 (331)
..+++.++++||.+|...| ++++|+.+|+++++.+++.+ ..+|+++|+.||+++
T Consensus 164 a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~a 243 (452)
T 3e4b_A 164 VERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKI 243 (452)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 3455667777777777777 99999999999999998876 458999999999999
Q ss_pred HHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHH
Q 020091 187 SIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKA 266 (331)
Q Consensus 187 ~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a 266 (331)
+ +|++.++++||.+|..|.+ .+|+++|+.||++|++.|++.++++||.+|..|.|+++|+++|+.||++|+ .|++.+
T Consensus 244 a-~g~~~a~~~Lg~~~~~~~~-~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~g~~~A 320 (452)
T 3e4b_A 244 A-PGYPASWVSLAQLLYDFPE-LGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV-GREVAA 320 (452)
T ss_dssp G-GGSTHHHHHHHHHHHHSGG-GCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT-TTCHHH
T ss_pred c-CCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh-CCCHHH
Confidence 9 9999999999999775554 889999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHhc----cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh--chhcHHHHHHHHHhhhc
Q 020091 267 QLEHGLGLFT----EGEMMKAVVYLELATRAGETAADHVKNVILQQL--SATSRDRAMLVVDSWRA 326 (331)
Q Consensus 267 ~~~Lg~~~~~----~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l--~~~~~~~a~~~~~~~~~ 326 (331)
+++||.+|.. ..|+++|+.||++|++.|+..+.++++.++... .+.+..+|..++++..+
T Consensus 321 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 321 DYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 9999998887 459999999999999999999999999998753 35688888888887654
No 8
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.95 E-value=8.1e-27 Score=197.95 Aligned_cols=181 Identities=16% Similarity=0.051 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 020091 122 DKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALC 201 (331)
Q Consensus 122 ~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 201 (331)
.+|+.||+++++.|++.++++||.+|...+++++|+.||+++++. |++.++++||.+
T Consensus 3 ~eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----------------------g~~~a~~~lg~~ 59 (212)
T 3rjv_A 3 TEPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-----------------------GDGDALALLAQL 59 (212)
T ss_dssp -CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----------------------TCHHHHHHHHHH
T ss_pred chHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----------------------CCHHHHHHHHHH
Confidence 468999999999999999999999999887777777777666654 789999999999
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC----HHHHHHHHHHHhc-
Q 020091 202 LHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH----GKAQLEHGLGLFT- 276 (331)
Q Consensus 202 y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~----~~a~~~Lg~~~~~- 276 (331)
|..| |+.+|+++|++||++|++.|++.++++||.+|..|.|+.+|+++|+.||++|++.++ +.++++||.+|..
T Consensus 60 y~~~-g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g 138 (212)
T 3rjv_A 60 KIRN-PQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASG 138 (212)
T ss_dssp TTSS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHT
T ss_pred HHcC-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcC
Confidence 9984 888999999999999999999999999999999999999999999999999999998 8999999999998
Q ss_pred ---cCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhh----chhcHHHHHHHHHhhhc
Q 020091 277 ---EGEMMKAVVYLELATRA-GETAADHVKNVILQQL----SATSRDRAMLVVDSWRA 326 (331)
Q Consensus 277 ---~~~~~~A~~~~~~A~~~-~~~~a~~~l~~~~~~l----~~~~~~~a~~~~~~~~~ 326 (331)
.+|+++|+.||++|++. ++..+.++++.++... .+.+.++|...+++..+
T Consensus 139 ~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 139 VHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp SSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 88999999999999998 8999999999999775 35589999999988654
No 9
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.93 E-value=1.3e-25 Score=177.47 Aligned_cols=136 Identities=20% Similarity=0.167 Sum_probs=124.5
Q ss_pred hcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCC
Q 020091 112 KHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGH 191 (331)
Q Consensus 112 ~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 191 (331)
..|.||.+|+++|+.||++|++.|++.++ ||.+|..++..++|+.||+++++. |+
T Consensus 2 ~~G~g~~~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~-----------------------g~ 56 (138)
T 1klx_A 2 VGGGTVKKDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACEL-----------------------NS 56 (138)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHT-----------------------TC
T ss_pred CCCcCCccCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcC-----------------------CC
Confidence 46889999999999999999999999999 999999887777666666665554 78
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHHHHH
Q 020091 192 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHG 271 (331)
Q Consensus 192 ~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg 271 (331)
+.++++||.+|..|.|+.+|+++|++||++|++.|++.++++||.+|..|.|+++|.++|+.||++|++.|++.++.+|+
T Consensus 57 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~l~ 136 (138)
T 1klx_A 57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILN 136 (138)
T ss_dssp HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred H
Q 020091 272 L 272 (331)
Q Consensus 272 ~ 272 (331)
.
T Consensus 137 ~ 137 (138)
T 1klx_A 137 N 137 (138)
T ss_dssp -
T ss_pred h
Confidence 5
No 10
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.89 E-value=6.2e-21 Score=175.25 Aligned_cols=242 Identities=15% Similarity=0.045 Sum_probs=135.8
Q ss_pred ccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCC
Q 020091 75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDK 152 (331)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~ 152 (331)
.+..+++++|...+....+..+ .++.+++.+|.+|.. .+++++|+.+|++++... ++.+++++|.++...|+
T Consensus 43 ~~~~~~~~~a~~~~~~a~~~~p--~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 116 (388)
T 1w3b_A 43 HFQCRRLDRSAHFSTLAIKQNP--LLAEAYSNLGNVYKE----RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD 116 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSC
T ss_pred HHHcCCHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHH----CCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCC
Confidence 3455666666666655555533 356667777777766 667777777777666543 55666666666666666
Q ss_pred HHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 020091 153 KEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWY 219 (331)
Q Consensus 153 ~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~ 219 (331)
+++|+..|++++...+... ..+++++|+.+|+++++ ++++.+++++|.+|.. .+++++|+.+|
T Consensus 117 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~ 192 (388)
T 1w3b_A 117 MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA----QGEIWLAIHHF 192 (388)
T ss_dssp SSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHH
Confidence 6666666666666655443 34566666666666543 2445555556655554 45555555555
Q ss_pred HHHHHC--CC----------------------------------HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--
Q 020091 220 LRAAEG--GY----------------------------------VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-- 261 (331)
Q Consensus 220 ~~A~~~--~~----------------------------------~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-- 261 (331)
+++++. ++ ..++.++|.+|.. .+++++|+.+|+++++.
T Consensus 193 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p 268 (388)
T 1w3b_A 193 EKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE----QGLIDLAIDTYRRAIELQP 268 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCS
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCC
Confidence 555432 33 4444455555433 23555555555555554
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 262 GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 262 ~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
.++.+++.+|.++...|++++|+.+|+++++..+..+.............++.++|...+++.++..|.
T Consensus 269 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 337 (388)
T 1w3b_A 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337 (388)
T ss_dssp SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 234555556666666666666666666665554322222222223333445556666666665555553
No 11
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=8.7e-21 Score=169.19 Aligned_cols=248 Identities=12% Similarity=-0.005 Sum_probs=212.2
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGL 145 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~ 145 (331)
.+..+...+..|++.+|...+.+.++..+. +..++..++.++.. .+++++|+.+|++++... ++.+++.+|.
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPF--HASCLPVHIGTLVE----LNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CTTTHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--ChhhHHHHHHHHHH----hhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 455566677789999999999998887664 56777788888888 899999999999998864 8899999999
Q ss_pred HHhcCC-CHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCC
Q 020091 146 MYWEMD-KKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFN 211 (331)
Q Consensus 146 ~~~~~~-~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d 211 (331)
++...| ++++|+.+|++++...+... ..+++++|+.+|+++++. ++..+++.+|.+|.. .++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~ 174 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL----TNN 174 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH----TTC
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH----Hhh
Confidence 999999 99999999999999987766 789999999999999874 678899999999987 789
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHhccC
Q 020091 212 LQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-----------GHGKAQLEHGLGLFTEG 278 (331)
Q Consensus 212 ~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----------~~~~a~~~Lg~~~~~~~ 278 (331)
+++|+.+|+++++. .++.+++.+|.+|.. .+++++|..+|++++.. ....+++.+|.++...|
T Consensus 175 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 175 SKLAERFFSQALSIAPEDPFVMHEVGVVAFQ----NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 99999999999876 678899999999976 55999999999999874 34678999999999999
Q ss_pred CHHHHHHHHHHHHHcCCH--HHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCCC
Q 020091 279 EMMKAVVYLELATRAGET--AADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 331 (331)
Q Consensus 279 ~~~~A~~~~~~A~~~~~~--~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~~ 331 (331)
++++|+.+|+++++..+. .+..+++.++ ...++.++|...+++.++..|.+
T Consensus 251 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~~~~al~~~p~~ 303 (330)
T 3hym_B 251 KYAEALDYHRQALVLIPQNASTYSAIGYIH--SLMGNFENAVDYFHTALGLRRDD 303 (330)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHH--HHHTCHHHHHHHHHTTTTTCSCC
T ss_pred CHHHHHHHHHHHHhhCccchHHHHHHHHHH--HHhccHHHHHHHHHHHHccCCCc
Confidence 999999999999987654 4555555554 55678889999999999888864
No 12
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.89 E-value=1.1e-20 Score=173.70 Aligned_cols=240 Identities=17% Similarity=0.054 Sum_probs=190.6
Q ss_pred cCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCH
Q 020091 76 FTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKK 153 (331)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~ 153 (331)
...|++++|...+.+.++..|+ ++.++..+|.++.. .+++++|+.+|++++.. +++.++.++|.++...|++
T Consensus 112 ~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 185 (388)
T 1w3b_A 112 VAAGDMEGAVQAYVSALQYNPD--LYCVRSDLGNLLKA----LGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEI 185 (388)
T ss_dssp HHHSCSSHHHHHHHHHHHHCTT--CTHHHHHHHHHHHT----TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3445555555555555544332 45566667777766 67788888888877765 3677888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 020091 154 EAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYL 220 (331)
Q Consensus 154 ~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~ 220 (331)
++|+.+|++++..++... ..+++++|+..|++++. ++++.+++++|.+|.. .+++++|+.+|+
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 261 (388)
T 1w3b_A 186 WLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE----QGLIDLAIDTYR 261 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHH----cCCHHHHHHHHH
Confidence 888888888888766554 67888889999988876 4678999999999987 789999999999
Q ss_pred HHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-
Q 020091 221 RAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE- 295 (331)
Q Consensus 221 ~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~- 295 (331)
++++. +++.++.++|.+|.. .+++++|+.+|+++++. .+..++..+|.++...|++++|+.+|+++++..+
T Consensus 262 ~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 337 (388)
T 1w3b_A 262 RAIELQPHFPDAYCNLANALKE----KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337 (388)
T ss_dssp HHHHTCSSCHHHHHHHHHHHHH----HSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT
T ss_pred HHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 99886 578999999999976 55999999999999887 5688999999999999999999999999998754
Q ss_pred -HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCCC
Q 020091 296 -TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 331 (331)
Q Consensus 296 -~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~~ 331 (331)
..+..+++.++ ...++.++|...+++..+..|.+
T Consensus 338 ~~~~~~~l~~~~--~~~g~~~~A~~~~~~a~~~~p~~ 372 (388)
T 1w3b_A 338 FAAAHSNLASVL--QQQGKLQEALMHYKEAIRISPTF 372 (388)
T ss_dssp CHHHHHHHHHHH--HTTTCCHHHHHHHHHHHTTCTTC
T ss_pred cHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhhCCCC
Confidence 45556655555 55678889999999999888864
No 13
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.88 E-value=7.1e-22 Score=155.98 Aligned_cols=127 Identities=18% Similarity=0.131 Sum_probs=118.7
Q ss_pred CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHH
Q 020091 172 QPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQA 251 (331)
Q Consensus 172 ~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A 251 (331)
+.+|+++|+.||+++++.|++.++ ||.+|..|. +.++|++||++|++.|++.++++||.+|..|.|+++|+++|
T Consensus 7 ~~~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~----~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 7 VKKDLKKAIQYYVKACELNEMFGC--LSLVSNSQI----NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTS----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CccCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 567899999999999999999999 999999864 46679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 020091 252 RKWMKRAADCGHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAGETAADHVKNV 304 (331)
Q Consensus 252 ~~~~~~a~~~~~~~a~~~Lg~~~~~----~~~~~~A~~~~~~A~~~~~~~a~~~l~~ 304 (331)
+.||++|++.|++.++++||.+|.. .+|+++|+.||++|++.|+..++.+++.
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~l~~ 137 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILNN 137 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHC--
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHhh
Confidence 9999999999999999999999999 8999999999999999999999988764
No 14
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.87 E-value=1.2e-20 Score=160.18 Aligned_cols=194 Identities=13% Similarity=0.012 Sum_probs=155.9
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCH
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANA 176 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 176 (331)
.++.+++.+|.++.. .+++++|+..|++++... ++.+++++|.++...|++++|+.+|+++++++|
T Consensus 3 ~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-------- 70 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYA----LGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-------- 70 (217)
T ss_dssp -CCHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------
T ss_pred CcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------
Confidence 468899999999999 899999999999999874 999999999999999999999999999999877
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCC-----------CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCC
Q 020091 177 EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVD-----------FNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEG 243 (331)
Q Consensus 177 ~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~-----------~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g 243 (331)
+++.+++++|.+|.. . +++++|+..|+++++. +++.+++++|.+|..
T Consensus 71 -------------~~~~a~~~lg~~~~~----~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~--- 130 (217)
T 2pl2_A 71 -------------RYLGGYMVLSEAYVA----LYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL--- 130 (217)
T ss_dssp -------------TCHHHHHHHHHHHHH----HHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---
T ss_pred -------------CcHHHHHHHHHHHHH----hhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH---
Confidence 589999999999986 6 8899999999999875 778999999999976
Q ss_pred ccccHHHHHHHHHHHHHc-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHH
Q 020091 244 LPLSHRQARKWMKRAADC-GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVD 322 (331)
Q Consensus 244 ~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~ 322 (331)
.+++++|+.+|+++++. +++.+++++|.+|...|++++|+.+|+++++..+................++.++|...++
T Consensus 131 -~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 131 -LGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp -TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------------
T ss_pred -cCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 45999999999999766 6778899999999999999999999999998765444444444444566777888888877
Q ss_pred hhh
Q 020091 323 SWR 325 (331)
Q Consensus 323 ~~~ 325 (331)
+.-
T Consensus 210 ~~~ 212 (217)
T 2pl2_A 210 LEH 212 (217)
T ss_dssp ---
T ss_pred HHh
Confidence 763
No 15
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.87 E-value=5.8e-20 Score=167.23 Aligned_cols=240 Identities=11% Similarity=0.006 Sum_probs=204.9
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGL 145 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~ 145 (331)
.+..+...+..|++++|...+.+.++..++ ++.+++.+|.+|.. .+++++|+.+|++++... ++.+++.+|.
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPG--DAEAWQFLGITQAE----NENEQAAIVALQRCLELQPNNLKALMALAV 141 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 566677778889999999999999888654 79999999999999 899999999999999864 8999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCC---------------------CCCccCHHHHHHHHHHHHHC--C--CHHHHHHHHH
Q 020091 146 MYWEMDKKEAAISLYRQAAVLGDP---------------------AAQPANAEEAVKLLYQASIA--G--HVRAQYQLAL 200 (331)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~~~~---------------------~~~~~~~~~A~~~~~~a~~~--~--~~~a~~~lg~ 200 (331)
+|...|++++|+.+|++++...+. ....+++++|+.+|+++++. . ++.+++++|.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999999999876432 12688999999999999875 4 7899999999
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 020091 201 CLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFT 276 (331)
Q Consensus 201 ~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~ 276 (331)
+|.. .+++++|+.+|+++++. +++.+++++|.+|.. .+++++|+.+|++++.. .+..++++||.+|..
T Consensus 222 ~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 222 LFHL----SGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN----GDRSEEAVEAYTRALEIQPGFIRSRYNLGISCIN 293 (365)
T ss_dssp HHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 9987 78999999999999875 678999999999977 45999999999999887 568899999999999
Q ss_pred cCCHHHHHHHHHHHHHcC--------------CHHHHHHHHHHHhhhchhcHHHHHHHHHh
Q 020091 277 EGEMMKAVVYLELATRAG--------------ETAADHVKNVILQQLSATSRDRAMLVVDS 323 (331)
Q Consensus 277 ~~~~~~A~~~~~~A~~~~--------------~~~a~~~l~~~~~~l~~~~~~~a~~~~~~ 323 (331)
.|++++|+.+|+++++.. .......++.++..+.+.+ .+....++
T Consensus 294 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~ 352 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPE--LFQAANLG 352 (365)
T ss_dssp HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHH--HHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHH--HHHHHHHh
Confidence 999999999999999864 2456677777776665553 44444443
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=1.9e-19 Score=162.00 Aligned_cols=249 Identities=12% Similarity=-0.010 Sum_probs=138.7
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHH
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLM 146 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~ 146 (331)
+..+...+..|++++|...+...++..++ ++.+++.+|.+|.. .+++++|+.+|+++++. +++.+++.+|.+
T Consensus 7 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 7 LELGKKLLAAGQLADALSQFHAAVDGDPD--NYIAYYRRATVFLA----MGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcc--cHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 33344445556666666665555554332 45566666666666 56666666666666554 255566666666
Q ss_pred HhcCCCHHHHHHHHHHHHHcCC-------------------------------------------------CCC------
Q 020091 147 YWEMDKKEAAISLYRQAAVLGD-------------------------------------------------PAA------ 171 (331)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~~~-------------------------------------------------~~~------ 171 (331)
+...|++++|+.+|++++...+ ...
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 6666666666666666665544 222
Q ss_pred -----CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHH----------
Q 020091 172 -----QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMY---------- 232 (331)
Q Consensus 172 -----~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~---------- 232 (331)
..+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++. ++..++.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQ----LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHH
Confidence 344445555555544432 344555555555543 44455555555555443 2222221
Q ss_pred --HHHHHHhcCCCccccHHHHHHHHHHHHHcCC--H----HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 020091 233 --NTSLCYSFGEGLPLSHRQARKWMKRAADCGH--G----KAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNV 304 (331)
Q Consensus 233 --~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~----~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~ 304 (331)
.+|.++.. .+++++|+.+|+++..... + .++..+|.++...|++++|+.+|+++++..+.........
T Consensus 237 ~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 312 (359)
T 3ieg_A 237 LIESAEELIR----DGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDR 312 (359)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 22444433 2366666666666665422 2 2345677888888888888888888877654333333333
Q ss_pred HHhhhchhcHHHHHHHHHhhhcCCCCC
Q 020091 305 ILQQLSATSRDRAMLVVDSWRAMPSLH 331 (331)
Q Consensus 305 ~~~~l~~~~~~~a~~~~~~~~~~~~~~ 331 (331)
+......++.++|...+++..+..|.+
T Consensus 313 ~~~~~~~g~~~~A~~~~~~a~~~~p~~ 339 (359)
T 3ieg_A 313 AEAYLIEEMYDEAIQDYEAAQEHNEND 339 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 333445667778888888887777764
No 17
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.86 E-value=1.7e-19 Score=160.59 Aligned_cols=243 Identities=14% Similarity=0.011 Sum_probs=206.8
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGL 145 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~ 145 (331)
.+..+...+..|++++|...+.+.++..+ .++.+++.+|.+|.. .+++++|+.+|++++... ++.+++.+|.
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 97 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAP--EREEAWRSLGLTQAE----NEKDGLAIIALNHARMLDPKDIAVHAALAV 97 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence 45666667888999999999998888765 479999999999999 899999999999998874 8899999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCC--------------------------CCccCHHHHHHHHHHHHHC--CCHHHHHH
Q 020091 146 MYWEMDKKEAAISLYRQAAVLGDPA--------------------------AQPANAEEAVKLLYQASIA--GHVRAQYQ 197 (331)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~~~~~--------------------------~~~~~~~~A~~~~~~a~~~--~~~~a~~~ 197 (331)
++...|++++|+.+|++++...+.. ...+++++|+.+++++++. .++.+++.
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 177 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHAS 177 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 9999999999999999999875433 2456789999999998764 67999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 020091 198 LALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLG 273 (331)
Q Consensus 198 lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~ 273 (331)
+|.+|.. .+++++|+.+|+++++. ++..++..+|.+|.. .+++++|+.+|+++... .+..+++.+|.+
T Consensus 178 la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 178 LGVLYNL----SNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN----GNRPQEALDAYNRALDINPGYVRVMYNMAVS 249 (327)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHH----hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 9999987 78999999999999875 678999999999976 45999999999999887 567899999999
Q ss_pred HhccCCHHHHHHHHHHHHHcCCH--------------HHHHHHHHHHhhhchhcHHHHHHHHHhhhc
Q 020091 274 LFTEGEMMKAVVYLELATRAGET--------------AADHVKNVILQQLSATSRDRAMLVVDSWRA 326 (331)
Q Consensus 274 ~~~~~~~~~A~~~~~~A~~~~~~--------------~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~ 326 (331)
+...|++++|+.+|+++++..+. .+..+++.++ ...++.++|...+++.++
T Consensus 250 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 250 YSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLL--NVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHH--HHTTCHHHHHHHTTCCSH
T ss_pred HHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHH
Confidence 99999999999999999986544 3444555555 455677888888877553
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=2.1e-19 Score=163.17 Aligned_cols=240 Identities=11% Similarity=0.002 Sum_probs=205.4
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGL 145 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~ 145 (331)
.+..+...+..|++.+|...+.+.++..+ .++.+++.+|.+|.. .+++++|+.+|++++... ++.+++.+|.
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 140 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDP--KHMEAWQYLGTTQAE----NEQELLAISALRRCLELKPDNQTALMALAV 140 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCT--TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----CcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 35566667788999999999988887654 479999999999999 899999999999999874 8999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCC--------------------------CccCHHHHHHHHHHHHHC--C--CHHHH
Q 020091 146 MYWEMDKKEAAISLYRQAAVLGDPAA--------------------------QPANAEEAVKLLYQASIA--G--HVRAQ 195 (331)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~~~~~~--------------------------~~~~~~~A~~~~~~a~~~--~--~~~a~ 195 (331)
+|...|++++|+.+|++++...+... ..+++++|+.+|+++++. . ++.++
T Consensus 141 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 220 (368)
T 1fch_A 141 SFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 220 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHH
Confidence 99999999999999999999876543 246789999999999864 4 68999
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHH
Q 020091 196 YQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHG 271 (331)
Q Consensus 196 ~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg 271 (331)
+++|.+|.. .+++++|+.+|+++++. +++.+++++|.+|.. .+++++|+.+|++++.. .+..+++.+|
T Consensus 221 ~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 292 (368)
T 1fch_A 221 CGLGVLFNL----SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN----GNQSEEAVAAYRRALELQPGYIRSRYNLG 292 (368)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 999999987 78999999999999875 678999999999976 45999999999999876 5688999999
Q ss_pred HHHhccCCHHHHHHHHHHHHHcC--C-----------HHHHHHHHHHHhhhchhcHHHHHHHHHh
Q 020091 272 LGLFTEGEMMKAVVYLELATRAG--E-----------TAADHVKNVILQQLSATSRDRAMLVVDS 323 (331)
Q Consensus 272 ~~~~~~~~~~~A~~~~~~A~~~~--~-----------~~a~~~l~~~~~~l~~~~~~~a~~~~~~ 323 (331)
.+|...|++++|+.+|+++++.. . ..+...++.++..+.+.+ +|..+.++
T Consensus 293 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~ 355 (368)
T 1fch_A 293 ISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD--AYGAADAR 355 (368)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG--GHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH--hHHHhHHH
Confidence 99999999999999999998753 3 567778888877665554 55555544
No 19
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.85 E-value=4.8e-20 Score=156.51 Aligned_cols=191 Identities=13% Similarity=-0.023 Sum_probs=156.4
Q ss_pred HHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHH
Q 020091 66 FDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDA 143 (331)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~l 143 (331)
...+..+...+..|++++|...+.+.++..| .++.+++.+|.++.. .+++++|+.+|+++++.. ++.+++++
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~l 79 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENP--QDPEALYWLARTQLK----LGLVNPALENGKTLVARTPRYLGGYMVL 79 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS--SCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 3445566667889999999988888877655 489999999999999 899999999999999874 89999999
Q ss_pred HHHHhcC-----------CCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCH
Q 020091 144 GLMYWEM-----------DKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNL 212 (331)
Q Consensus 144 g~~~~~~-----------~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~ 212 (331)
|.++... |++++|+..|+++++..| +++.+++++|.+|.. .+++
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P---------------------~~~~~~~~lg~~~~~----~g~~ 134 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP---------------------RYAPLHLQRGLVYAL----LGER 134 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHH----TTCH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc---------------------ccHHHHHHHHHHHHH----cCCh
Confidence 9999999 999999999999988876 589999999999987 8899
Q ss_pred HHHHHHHHHHHHC-CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 020091 213 QEAARWYLRAAEG-GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLEL 289 (331)
Q Consensus 213 ~~A~~~~~~A~~~-~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~ 289 (331)
++|+.+|+++++. +++.+++++|.+|.. .+++++|+.+|+++++. +++.+++++|.++...|++++|+.+|++
T Consensus 135 ~~A~~~~~~al~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 135 DKAEASLKQALALEDTPEIRSALAELYLS----MGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999765 788999999999976 55999999999999887 6789999999999999999999999998
Q ss_pred HH
Q 020091 290 AT 291 (331)
Q Consensus 290 A~ 291 (331)
+-
T Consensus 211 ~~ 212 (217)
T 2pl2_A 211 EH 212 (217)
T ss_dssp --
T ss_pred Hh
Confidence 74
No 20
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.85 E-value=9e-20 Score=149.92 Aligned_cols=171 Identities=20% Similarity=0.200 Sum_probs=156.4
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
++..++.||.+|.. .|++++|+.+|+++++.. ++.+++.+|.+|...|++++|+..+.++....+
T Consensus 4 ~~~iy~~lG~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~--------- 70 (184)
T 3vtx_A 4 TTTIYMDIGDKKRT----KGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT--------- 70 (184)
T ss_dssp CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc---------
Confidence 57889999999999 999999999999999874 999999999999999999999999999988876
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHH
Q 020091 178 EAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWM 255 (331)
Q Consensus 178 ~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 255 (331)
.++.++..+|.++.. .+++++|..++.++... .+..++..+|.+|.. .+++++|+.+|
T Consensus 71 ------------~~~~~~~~~~~~~~~----~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~ 130 (184)
T 3vtx_A 71 ------------TSAEAYYILGSANFM----IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS----MGEHDKAIEAY 130 (184)
T ss_dssp ------------CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHH
T ss_pred ------------hhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----hCCchhHHHHH
Confidence 589999999999987 78999999999999765 789999999999976 55999999999
Q ss_pred HHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 020091 256 KRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKN 303 (331)
Q Consensus 256 ~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~ 303 (331)
+++++. .++.+++++|.+|...|++++|+.+|++|++.++.++.++++
T Consensus 131 ~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~~~la 180 (184)
T 3vtx_A 131 EKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYELA 180 (184)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHHHCSC
T ss_pred HHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHHHHHH
Confidence 999887 568999999999999999999999999999999888776654
No 21
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.84 E-value=1.1e-18 Score=162.87 Aligned_cols=249 Identities=13% Similarity=0.007 Sum_probs=143.0
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHH
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLM 146 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~ 146 (331)
+..+...+..|++.+|...+...++..+ .++.+++.+|.+|.. .+++++|+.+|+++++.+ ++.+++.+|.+
T Consensus 30 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 30 LELGKKLLAAGQLADALSQFHAAVDGDP--DNYIAYYRRATVFLA----MGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 3444445566777777777666666543 357777777777777 677777777777776653 66677777777
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCC--------------------------CccCHHHHHHHHHHHHHC--CCHHHHHHH
Q 020091 147 YWEMDKKEAAISLYRQAAVLGDPAA--------------------------QPANAEEAVKLLYQASIA--GHVRAQYQL 198 (331)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~~~~~~--------------------------~~~~~~~A~~~~~~a~~~--~~~~a~~~l 198 (331)
|...|++++|+.+|++++...+... ..+++++|+.+|+++++. .++.+++.+
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 183 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELR 183 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 7777777777777777766654321 244555555555555432 344555555
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCC---------------------------------
Q 020091 199 ALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEG--------------------------------- 243 (331)
Q Consensus 199 g~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g--------------------------------- 243 (331)
|.+|.. .+++++|+.+|+++++. +++.+++.+|.+|.. .|
T Consensus 184 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 184 AECFIK----EGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQ-LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHH----TTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 555543 44455555555544432 344444444444433 11
Q ss_pred ----------ccccHHHHHHHHHHHHHcC--C----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--HHHHHHHHHH
Q 020091 244 ----------LPLSHRQARKWMKRAADCG--H----GKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAADHVKNVI 305 (331)
Q Consensus 244 ----------~~~~~~~A~~~~~~a~~~~--~----~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~--~~a~~~l~~~ 305 (331)
..+++++|+.+|++++... + ...+..+|.++...|++++|+.+|+++++..+ ..+..+++.+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 338 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEA 338 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 0235555555555555442 1 12455666666667777777777777666543 3344443333
Q ss_pred HhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 306 LQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 306 ~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
+ ...++.++|...+++.++..|.
T Consensus 339 ~--~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 339 Y--LIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp H--HHTTCHHHHHHHHHHHHTTSSS
T ss_pred H--HHhcCHHHHHHHHHHHHHhCcc
Confidence 3 4455666777777776666665
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=6.5e-19 Score=156.96 Aligned_cols=221 Identities=14% Similarity=0.090 Sum_probs=195.4
Q ss_pred HhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHhCC--CHHHHHHHHHHHhc
Q 020091 73 AASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRK-NLDKALDSFLKGAARG--STLAMVDAGLMYWE 149 (331)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~-~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~ 149 (331)
...+..|++++|...+.+.++..+ .++.+++.+|.++.. .+ ++++|+.+|++++... ++.++..+|.++..
T Consensus 64 ~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 137 (330)
T 3hym_B 64 GTLVELNKANELFYLSHKLVDLYP--SNPVSWFAVGCYYLM----VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAV 137 (330)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCT--TSTHHHHHHHHHHHH----SCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 344677899999999998888755 478999999999999 88 9999999999999875 78999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 020091 150 MDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAA 216 (331)
Q Consensus 150 ~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~~A~ 216 (331)
.|++++|+.+|++++...+... ..+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+
T Consensus 138 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~~~~~A~ 213 (330)
T 3hym_B 138 ESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ----NGEWKTAE 213 (330)
T ss_dssp HTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----TTCHHHHH
T ss_pred ccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cccHHHHH
Confidence 9999999999999999987765 789999999999999875 689999999999987 78999999
Q ss_pred HHHHHHHH-----------CCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHH
Q 020091 217 RWYLRAAE-----------GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKA 283 (331)
Q Consensus 217 ~~~~~A~~-----------~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A 283 (331)
.+|+++++ .....++..+|.+|.. .+++++|+.+|++++.. .+..++..+|.++...|++++|
T Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 289 (330)
T 3hym_B 214 KWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK----LKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENA 289 (330)
T ss_dssp HHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHH
Confidence 99999987 3456899999999976 45999999999999876 5678999999999999999999
Q ss_pred HHHHHHHHHcC--CHHHHHHHHHHHh
Q 020091 284 VVYLELATRAG--ETAADHVKNVILQ 307 (331)
Q Consensus 284 ~~~~~~A~~~~--~~~a~~~l~~~~~ 307 (331)
+.+|+++++.. +..+...++..+.
T Consensus 290 ~~~~~~al~~~p~~~~~~~~l~~~~~ 315 (330)
T 3hym_B 290 VDYFHTALGLRRDDTFSVTMLGHCIE 315 (330)
T ss_dssp HHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCchHHHHHHHHHHH
Confidence 99999998875 5677777777663
No 23
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1e-18 Score=150.18 Aligned_cols=212 Identities=12% Similarity=0.078 Sum_probs=187.6
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--C-------HH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S-------TL 138 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~-------~~ 138 (331)
....+...+..|++++|...+...++.. .++.+++.+|.+|.. .+++++|+.+|+++++.. + +.
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYE----KGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHH----cccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 3455556778899999999999888876 578999999999999 899999999999999764 2 78
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC---CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHH
Q 020091 139 AMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA---QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQ 213 (331)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~ 213 (331)
+++.+|.++...|++++|+.+|++++...+... ..+++++|+.++++++.. .++.+++.+|.+|.. .++++
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 156 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFT----KSDWP 156 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH----TTCHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH----hcCHH
Confidence 999999999999999999999999999865432 678899999999999876 467889999999987 78999
Q ss_pred HHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 020091 214 EAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLEL 289 (331)
Q Consensus 214 ~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~ 289 (331)
+|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++. .+..+++.+|.++...|++++|+.+|++
T Consensus 157 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPEDARGYSNRAAALAK----LMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999875 678999999999976 45999999999999877 5678999999999999999999999999
Q ss_pred HHHcC
Q 020091 290 ATRAG 294 (331)
Q Consensus 290 A~~~~ 294 (331)
+++..
T Consensus 233 a~~~~ 237 (258)
T 3uq3_A 233 ARTKD 237 (258)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99876
No 24
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.83 E-value=1.6e-18 Score=161.63 Aligned_cols=230 Identities=16% Similarity=0.068 Sum_probs=162.2
Q ss_pred HHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CH---HHH
Q 020091 66 FDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--ST---LAM 140 (331)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~---~a~ 140 (331)
......+...+..|++++|...+.+.++..++ ++.+++.+|.+|.. .+++++|+.+|++++... ++ .++
T Consensus 61 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 134 (450)
T 2y4t_A 61 IAYYRRATVFLAMGKSKAALPDLTKVIQLKMD--FTAARLQRGHLLLK----QGKLDEAEDDFKKVLKSNPSENEEKEAQ 134 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChhhHHHH
Confidence 33444555567789999999888888887554 68899999999998 899999999999998765 33 443
Q ss_pred H------------HHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-------------------------------------
Q 020091 141 V------------DAGLMYWEMDKKEAAISLYRQAAVLGDPAA------------------------------------- 171 (331)
Q Consensus 141 ~------------~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~------------------------------------- 171 (331)
. .+|.++...|++++|+.+|++++...+...
T Consensus 135 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 214 (450)
T 2y4t_A 135 SQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAF 214 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 3 335667777788888888887777665443
Q ss_pred --------CccCHHHHHHHHHHHHHC--CCHHHHHHH------------HHHHhcCCCCCCCHHHHHHHHHHHHHC--CC
Q 020091 172 --------QPANAEEAVKLLYQASIA--GHVRAQYQL------------ALCLHRGRGVDFNLQEAARWYLRAAEG--GY 227 (331)
Q Consensus 172 --------~~~~~~~A~~~~~~a~~~--~~~~a~~~l------------g~~y~~G~g~~~d~~~A~~~~~~A~~~--~~ 227 (331)
..+++++|+.+|++++.. +++..+..+ |.++.. .+++++|+.+|+++++. ++
T Consensus 215 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~l~~~p~~ 290 (450)
T 2y4t_A 215 YKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR----DGRYTDATSKYESVMKTEPSI 290 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCcc
Confidence 344555555555554432 334443333 444444 45566666666666543 22
Q ss_pred ----HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CHHHH
Q 020091 228 ----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAAD 299 (331)
Q Consensus 228 ----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~--~~~a~ 299 (331)
...+..+|.+|.. .+++++|+.+|++++.. .+..+++.+|.++...|++++|+.+|+++++.. +..+.
T Consensus 291 ~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 366 (450)
T 2y4t_A 291 AEYTVRSKERICHCFSK----DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIR 366 (450)
T ss_dssp HHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHH
T ss_pred hHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHH
Confidence 3367778888865 45999999999999876 568999999999999999999999999999875 45666
Q ss_pred HHHHHHHhhh
Q 020091 300 HVKNVILQQL 309 (331)
Q Consensus 300 ~~l~~~~~~l 309 (331)
..++.+...+
T Consensus 367 ~~l~~~~~~~ 376 (450)
T 2y4t_A 367 EGLEKAQRLL 376 (450)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666554433
No 25
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.82 E-value=2.2e-18 Score=166.62 Aligned_cols=249 Identities=10% Similarity=-0.024 Sum_probs=208.4
Q ss_pred HHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 020091 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG 144 (331)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg 144 (331)
.....+......|++++|..++.+..+..++ +..++..++.+|.. .+++++|+..|++++.. .++.+++.+|
T Consensus 307 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 380 (597)
T 2xpi_A 307 LLLCKADTLFVRSRFIDVLAITTKILEIDPY--NLDVYPLHLASLHE----SGEKNKLYLISNDLVDRHPEKAVTWLAVG 380 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CCTTHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc--cHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCcccHHHHHHHH
Confidence 3344555567788999998888888776554 66778888888888 89999999999988765 4788999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCC
Q 020091 145 LMYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFN 211 (331)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d 211 (331)
.+|...|++++|+.+|+++++..+... ..+++++|+.+|+++++. +++.+++.+|.+|.. .++
T Consensus 381 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 456 (597)
T 2xpi_A 381 IYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQ----LGN 456 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHH----HTC
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----cCC
Confidence 999999999999999999998876654 789999999999998875 578899999999987 789
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc------CC---HHHHHHHHHHHhccCCH
Q 020091 212 LQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC------GH---GKAQLEHGLGLFTEGEM 280 (331)
Q Consensus 212 ~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~~---~~a~~~Lg~~~~~~~~~ 280 (331)
+++|+++|+++++. .++.++..+|.+|.. .+++++|+.+|+++.+. .. ..++..+|.+|...|++
T Consensus 457 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 532 (597)
T 2xpi_A 457 ILLANEYLQSSYALFQYDPLLLNELGVVAFN----KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532 (597)
T ss_dssp HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCH
Confidence 99999999999774 678999999999976 45999999999999875 21 56889999999999999
Q ss_pred HHHHHHHHHHHHcCC--HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCCC
Q 020091 281 MKAVVYLELATRAGE--TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 331 (331)
Q Consensus 281 ~~A~~~~~~A~~~~~--~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~~ 331 (331)
++|+.+|+++++.++ ..+...++.++ ...++.++|.+.+++.++..|.+
T Consensus 533 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 533 DAAIDALNQGLLLSTNDANVHTAIALVY--LHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHH--HHhCCHHHHHHHHHHHHhcCCCC
Confidence 999999999998765 45555555554 55678899999999999888864
No 26
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.82 E-value=9e-19 Score=152.33 Aligned_cols=225 Identities=10% Similarity=-0.014 Sum_probs=174.4
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-----CHHHHHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVD 142 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~ 142 (331)
.+..+...+..|++++|+..+...++..++ ++.+++.+|.+|.. .+++++|+.+|++++... .+.+++.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYN--SPYIYNRRAVCYYE----LAKYDLAQKDIETYFSKVNATKAKSADFEY 79 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCC--CSTTHHHHHHHHHH----TTCHHHHHHHHHHHHTTSCTTTCCHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 456667778999999999999988887654 67789999999999 899999999999999853 3556899
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHH--CCCHHHHHHHH-HHHhcCCCC
Q 020091 143 AGLMYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASI--AGHVRAQYQLA-LCLHRGRGV 208 (331)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~--~~~~~a~~~lg-~~y~~G~g~ 208 (331)
+|.++...|++++|+.+|+++++..+... ..+++++|+.+|+++++ +.++.+++++| .+|..
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~---- 155 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN---- 155 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT----
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH----
Confidence 99999999999999999999999987665 67888888888888765 36788888888 77764
Q ss_pred CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC----C------HHHHHHHHHHHhc
Q 020091 209 DFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG----H------GKAQLEHGLGLFT 276 (331)
Q Consensus 209 ~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~------~~a~~~Lg~~~~~ 276 (331)
+++++|+.+|+++++. .+..+++.+|.++..- |...++++|+.+|+++++.. + ..++..||.+|..
T Consensus 156 -~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 156 -KEYVKADSSFVKVLELKPNIYIGYLWRARANAAQ-DPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp -TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-STTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc-CcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 3788888888888764 5677888888887542 21223677888888877652 2 2566778888888
Q ss_pred cCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Q 020091 277 EGEMMKAVVYLELATRAGE--TAADHVKNV 304 (331)
Q Consensus 277 ~~~~~~A~~~~~~A~~~~~--~~a~~~l~~ 304 (331)
.|++++|+.+|+++++..+ ..+...+..
T Consensus 234 ~~~~~~A~~~~~~al~~~p~~~~a~~~l~~ 263 (272)
T 3u4t_A 234 NRDKVKADAAWKNILALDPTNKKAIDGLKM 263 (272)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHhcCccHHHHHHHhhh
Confidence 8888888888888877644 444444333
No 27
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.1e-18 Score=165.09 Aligned_cols=249 Identities=10% Similarity=-0.042 Sum_probs=196.3
Q ss_pred HHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHH
Q 020091 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAG 144 (331)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg 144 (331)
..+..+...+..|++.+|+..+.+.++..+ ++.+++.+|.+|.. .+++++|+.+|+++++.+ ++.+++.+|
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 80 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKE---DPVFYSNLSACYVS----VGDLKKVVEMSTKALELKPDYSKVLLRRA 80 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCc---cHHHHHhHHHHHHH----HhhHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 345666677889999999999998888764 68999999999999 899999999999998774 889999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCC-----------------------------------------------------
Q 020091 145 LMYWEMDKKEAAISLYRQAAVLGDPAA----------------------------------------------------- 171 (331)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~~~~~~----------------------------------------------------- 171 (331)
.+|...|++++|+..|++++..++...
T Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 81 SANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 999999999999999999988775220
Q ss_pred ----------------------------------------CccCHHHHHHHHHHHHH----------------CCCHHHH
Q 020091 172 ----------------------------------------QPANAEEAVKLLYQASI----------------AGHVRAQ 195 (331)
Q Consensus 172 ----------------------------------------~~~~~~~A~~~~~~a~~----------------~~~~~a~ 195 (331)
..+++++|+.+|+++++ ..++.++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 16889999999999988 4567889
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 020091 196 YQLALCLHRGRGVDFNLQEAARWYLRAAEGGY-VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGL 272 (331)
Q Consensus 196 ~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~-~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~ 272 (331)
+.+|.+|.. .+++++|+.+|+++++.+. ..++..+|.+|.. .+++++|+.+|++++.. .+..++..+|.
T Consensus 241 ~~~~~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 312 (514)
T 2gw1_A 241 EHTGIFKFL----KNDPLGAHEDIKKAIELFPRVNSYIYMALIMAD----RNDSTEYYNYFDKALKLDSNNSSVYYHRGQ 312 (514)
T ss_dssp HHHHHHHHH----SSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHT----SSCCTTGGGHHHHHHTTCTTCTHHHHHHHH
T ss_pred HHHHHHHHH----CCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHH----CCCHHHHHHHHHHHhhcCcCCHHHHHHHHH
Confidence 999999987 7899999999999987522 7788888888865 33777788888887765 45677777787
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 273 GLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 273 ~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
++...|++++|+.+|+++++..+.........+......++.++|...+++..+..|.
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 370 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE 370 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 7777788888888888777765443333333444445566777777777776655553
No 28
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.82 E-value=6.3e-19 Score=162.36 Aligned_cols=222 Identities=6% Similarity=-0.081 Sum_probs=182.2
Q ss_pred hccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHhCC--CHHHHHHHHHHHhcC
Q 020091 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKN-LDKALDSFLKGAARG--STLAMVDAGLMYWEM 150 (331)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~-~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~ 150 (331)
.....|++++|+..+.+.++..++ ++.+++.+|.++.. .++ +++|+.+|++++..+ ++.+++++|.++...
T Consensus 106 ~~~~~g~~~~Al~~~~~al~l~P~--~~~a~~~~g~~l~~----~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~ 179 (382)
T 2h6f_A 106 VLQRDERSERAFKLTRDAIELNAA--NYTVWHFRRVLLKS----LQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL 179 (382)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCChHHHHHHHHHHHHhCcc--CHHHHHHHHHHHHH----cccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence 345568888998888888887654 78889999999888 775 999999999988774 888999999999888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCH
Q 020091 151 DKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYV 228 (331)
Q Consensus 151 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~ 228 (331)
|++++|+.+|++++.+++ +++.+++++|.++.. .+++++|+.+|+++++. ++.
T Consensus 180 g~~~eAl~~~~kal~ldP---------------------~~~~a~~~lg~~~~~----~g~~~eAl~~~~~al~l~P~~~ 234 (382)
T 2h6f_A 180 RDPSQELEFIADILNQDA---------------------KNYHAWQHRQWVIQE----FKLWDNELQYVDQLLKEDVRNN 234 (382)
T ss_dssp TCCTTHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHH----HTCCTTHHHHHHHHHHHCTTCH
T ss_pred cCHHHHHHHHHHHHHhCc---------------------cCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCH
Confidence 999999999988888876 689999999999987 77899999999999875 789
Q ss_pred HHHHHHHHHHhcCCCccccHHHH-----HHHHHHHHHc--CCHHHHHHHHHHHhccC--CHHHHHHHHHHHHHc--CCHH
Q 020091 229 RAMYNTSLCYSFGEGLPLSHRQA-----RKWMKRAADC--GHGKAQLEHGLGLFTEG--EMMKAVVYLELATRA--GETA 297 (331)
Q Consensus 229 ~a~~~lg~~y~~g~g~~~~~~~A-----~~~~~~a~~~--~~~~a~~~Lg~~~~~~~--~~~~A~~~~~~A~~~--~~~~ 297 (331)
.+++++|.+|..-.| ..++| +.+|++|+.. ++..+++++|.++...| ++++|+.+++++ +. ++..
T Consensus 235 ~a~~~lg~~l~~l~~---~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~ 310 (382)
T 2h6f_A 235 SVWNQRYFVISNTTG---YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPY 310 (382)
T ss_dssp HHHHHHHHHHHHTTC---SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHH
T ss_pred HHHHHHHHHHHHhcC---cchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHH
Confidence 999999999977333 22444 6999999877 67889999999999888 799999999887 44 4567
Q ss_pred HHHHHHHHHhhhch------h-cHHHHHHHHHhh-hcCCCC
Q 020091 298 ADHVKNVILQQLSA------T-SRDRAMLVVDSW-RAMPSL 330 (331)
Q Consensus 298 a~~~l~~~~~~l~~------~-~~~~a~~~~~~~-~~~~~~ 330 (331)
+...++.++..+.. + ..++|..+++++ .+..|.
T Consensus 311 al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~ 351 (382)
T 2h6f_A 311 LIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTI 351 (382)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCch
Confidence 77788888876631 2 358899999998 677764
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=1.8e-19 Score=163.89 Aligned_cols=217 Identities=12% Similarity=-0.008 Sum_probs=178.1
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC------
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA------ 171 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~------ 171 (331)
++..++.+|.++.. .+++++|+.+|++++.. +++.+++.+|.+|...|++++|+.+|++++...+...
T Consensus 64 ~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLK----EGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred chhHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 44569999999999 89999999999999986 4899999999999999999999999999999977655
Q ss_pred -----CccCHHHHHHHHHHHHHCC--CH----------HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--C--CHHH
Q 020091 172 -----QPANAEEAVKLLYQASIAG--HV----------RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--G--YVRA 230 (331)
Q Consensus 172 -----~~~~~~~A~~~~~~a~~~~--~~----------~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~--~~~a 230 (331)
..+++++|+.+|+++++.. ++ .....+|.+|.. .+++++|+.+|+++++. . ++.+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~ 215 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVD----SSVLEGVKELYLEAAHQNGDMIDPDL 215 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------C----CHHHHHHHHHHHHHHHHSCSSCCHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhh----hhhHHHHHHHHHHHHHhCcCccCHHH
Confidence 7899999999999998752 22 233445888876 78999999999999875 3 7899
Q ss_pred HHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--HHHHHHHHHHH
Q 020091 231 MYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAADHVKNVIL 306 (331)
Q Consensus 231 ~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~--~~a~~~l~~~~ 306 (331)
++++|.+|.. .+++++|+.+|++++.. .+..+++.+|.+|...|++++|+.+|+++++..+ ..+..+++.++
T Consensus 216 ~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 216 QTGLGVLFHL----SGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC 291 (365)
T ss_dssp HHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 9999999976 55999999999999887 5688999999999999999999999999998755 55555665555
Q ss_pred hhhchhcHHHHHHHHHhhhcCCCC
Q 020091 307 QQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 307 ~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
...++.++|...+++.++..|.
T Consensus 292 --~~~g~~~~A~~~~~~al~~~~~ 313 (365)
T 4eqf_A 292 --INLGAYREAVSNFLTALSLQRK 313 (365)
T ss_dssp --HHHTCCHHHHHHHHHHHHHHHC
T ss_pred --HHCCCHHHHHHHHHHHHHhCcc
Confidence 4557778999999998766543
No 30
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=2.9e-19 Score=162.15 Aligned_cols=239 Identities=13% Similarity=-0.019 Sum_probs=187.6
Q ss_pred CCchHHHhHH-HHHHHHHHhCCCC--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCC
Q 020091 77 TLPQLRAASL-VCKSWNDALRPLR--EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMD 151 (331)
Q Consensus 77 ~~~~~~~a~~-~~~~~~~~~~~~~--~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~ 151 (331)
-.+++.+|.. .+.+.++..++.. ++.+++.+|.+|.. .+++++|+.+|++++... ++.+++.+|.++...|
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQ----EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHH----TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc
Confidence 3467777754 4443333333222 35678999999999 899999999999999874 8999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHCC--CHHHHH----------------HHHHHH
Q 020091 152 KKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIAG--HVRAQY----------------QLALCL 202 (331)
Q Consensus 152 ~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~~--~~~a~~----------------~lg~~y 202 (331)
++++|+.+|++++...+... ..+++++|+.+|+++++.. +..++. .+|.++
T Consensus 113 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 113 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 99999999999999987665 7899999999999998753 333332 577777
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHC--C--CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 020091 203 HRGRGVDFNLQEAARWYLRAAEG--G--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFT 276 (331)
Q Consensus 203 ~~G~g~~~d~~~A~~~~~~A~~~--~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~ 276 (331)
. .+++++|+.+|+++++. . ++.++..+|.+|.. .+++++|+.+|++++.. .++.+++.+|.++..
T Consensus 193 ~-----~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 263 (368)
T 1fch_A 193 S-----DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL----SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN 263 (368)
T ss_dssp H-----HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred h-----cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 3 57899999999999875 3 67899999999976 45999999999999876 567899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 277 EGEMMKAVVYLELATRAGE--TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 277 ~~~~~~A~~~~~~A~~~~~--~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
.|++++|+.+|+++++..+ ..+..+++.++ ...++.++|...+++.++..|.
T Consensus 264 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 264 GNQSEEAVAAYRRALELQPGYIRSRYNLGISC--INLGAHREAVEHFLEALNMQRK 317 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH--HHHTCHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999998765 44555555554 5667888999999998765553
No 31
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.80 E-value=1.1e-18 Score=172.88 Aligned_cols=164 Identities=14% Similarity=0.020 Sum_probs=152.3
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccC
Q 020091 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPAN 175 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 175 (331)
..++.++++||.+|.. .|++++|+.+|++|++.. ++.++++||.+|...|++++|+.+|++|+++++
T Consensus 6 P~~a~al~nLG~~~~~----~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P------- 74 (723)
T 4gyw_A 6 PTHADSLNNLANIKRE----QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP------- 74 (723)
T ss_dssp CHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------
T ss_pred CCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------
Confidence 4579999999999999 999999999999999874 999999999999999999999999999999876
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHH
Q 020091 176 AEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARK 253 (331)
Q Consensus 176 ~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~ 253 (331)
+++.++++||.+|.. .+++++|+++|++|++. +++.++++||.+|.. .+++++|+.
T Consensus 75 --------------~~~~a~~nLg~~l~~----~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~----~g~~~eAi~ 132 (723)
T 4gyw_A 75 --------------TFADAYSNMGNTLKE----MQDVQGALQCYTRAIQINPAFADAHSNLASIHKD----SGNIPEAIA 132 (723)
T ss_dssp --------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHH
T ss_pred --------------CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHH
Confidence 589999999999987 88999999999999875 789999999999976 459999999
Q ss_pred HHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 020091 254 WMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 294 (331)
Q Consensus 254 ~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~ 294 (331)
+|++|++. ++..++.+||.+|...|++++|...|+++++..
T Consensus 133 ~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 133 SYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175 (723)
T ss_dssp HHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhC
Confidence 99999987 678999999999999999999999999998764
No 32
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.80 E-value=9.1e-18 Score=160.00 Aligned_cols=249 Identities=10% Similarity=-0.038 Sum_probs=164.0
Q ss_pred HHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHH
Q 020091 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAG 144 (331)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg 144 (331)
.....+...+..|++++|+..+.+.++..+ .++.+++.+|.+|.. .+++++|+..|++++..+ ++.+++.+|
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la 100 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDP--NEPVFYSNISACYIS----TGDLEKVIEFTTKALEIKPDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHCT--TCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 345666677889999999999999988865 479999999999999 899999999999999864 899999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCC-----------------------------------------------------
Q 020091 145 LMYWEMDKKEAAISLYRQAAVLGDPAA----------------------------------------------------- 171 (331)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~~~~~~----------------------------------------------------- 171 (331)
.++...|++++|+..|+ ++...+...
T Consensus 101 ~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 99999999999999885 553322211
Q ss_pred ----------------------------------CccCHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHhcCCCC
Q 020091 172 ----------------------------------QPANAEEAVKLLYQASIA--GHV-------RAQYQLALCLHRGRGV 208 (331)
Q Consensus 172 ----------------------------------~~~~~~~A~~~~~~a~~~--~~~-------~a~~~lg~~y~~G~g~ 208 (331)
..+++++|+.+|+++++. +++ .+++.+|.++..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~---- 255 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL---- 255 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh----
Confidence 002566666666666543 332 245566666654
Q ss_pred CCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHH
Q 020091 209 DFNLQEAARWYLRAAEG-GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVV 285 (331)
Q Consensus 209 ~~d~~~A~~~~~~A~~~-~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~ 285 (331)
.+++++|+.+|+++++. ....+++.+|.+|.. .+++++|+.+|++++.. .++.+++.+|.++...|++++|+.
T Consensus 256 ~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLHPTPNSYIFLALTLAD----KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCC----SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCCCchHHHHHHHHHHH----hcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 56677777777776654 225566666666643 33666666666666654 345666666666666666666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 286 YLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 286 ~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
+|+++++.++................++.++|...+++..+..|.
T Consensus 332 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 376 (537)
T 3fp2_A 332 DFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT 376 (537)
T ss_dssp HHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 666666654322222222223333445556666666665555443
No 33
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.79 E-value=3.4e-18 Score=157.49 Aligned_cols=198 Identities=6% Similarity=-0.079 Sum_probs=174.1
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCCCCCccC
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDK-KEAAISLYRQAAVLGDPAAQPAN 175 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~ 175 (331)
.++.+++.+|.++.. .+++++|+..|++++..+ ++.+++++|.++...|+ +++|+.+|++++.+++
T Consensus 95 ~~~~a~~~lg~~~~~----~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P------- 163 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQR----DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP------- 163 (382)
T ss_dssp HHHHHHHHHHHHHHH----TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-------
T ss_pred hhHHHHHHHHHHHHH----CCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-------
Confidence 367889999999999 899999999999999875 99999999999999996 9999999999999877
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHH
Q 020091 176 AEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARK 253 (331)
Q Consensus 176 ~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~ 253 (331)
.++.+++++|.+|.. .+++++|+.+|++|++. ++..+++++|.++.. .+++++|+.
T Consensus 164 --------------~~~~a~~~~g~~~~~----~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~----~g~~~eAl~ 221 (382)
T 2h6f_A 164 --------------KNYQVWHHRRVLVEW----LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE----FKLWDNELQ 221 (382)
T ss_dssp --------------TCHHHHHHHHHHHHH----HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCTTHHH
T ss_pred --------------CCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH----cCChHHHHH
Confidence 589999999999987 78999999999999875 789999999999976 458999999
Q ss_pred HHHHHHHc--CCHHHHHHHHHHHhc-cCCHHHH-----HHHHHHHHHcC--CHHHHHHHHHHHhhhchhcHHHHHHHHHh
Q 020091 254 WMKRAADC--GHGKAQLEHGLGLFT-EGEMMKA-----VVYLELATRAG--ETAADHVKNVILQQLSATSRDRAMLVVDS 323 (331)
Q Consensus 254 ~~~~a~~~--~~~~a~~~Lg~~~~~-~~~~~~A-----~~~~~~A~~~~--~~~a~~~l~~~~~~l~~~~~~~a~~~~~~ 323 (331)
+|+++++. .+..+++++|.++.. .|..++| +.+|++|++.. +..+..+++.++......+.+++.+.+++
T Consensus 222 ~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~ 301 (382)
T 2h6f_A 222 YVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLD 301 (382)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHH
Confidence 99999987 678999999999999 5555777 59999999874 57788888888887655577889998888
Q ss_pred hhcCCCC
Q 020091 324 WRAMPSL 330 (331)
Q Consensus 324 ~~~~~~~ 330 (331)
+ +..|.
T Consensus 302 ~-~~~p~ 307 (382)
T 2h6f_A 302 L-QPSHS 307 (382)
T ss_dssp H-TTTCC
T ss_pred h-ccCCC
Confidence 7 66654
No 34
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.2e-17 Score=158.01 Aligned_cols=240 Identities=13% Similarity=-0.006 Sum_probs=201.1
Q ss_pred CCchHHHhHHHHHHHHH-----H--hCC-----CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHH
Q 020091 77 TLPQLRAASLVCKSWND-----A--LRP-----LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMVDA 143 (331)
Q Consensus 77 ~~~~~~~a~~~~~~~~~-----~--~~~-----~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~l 143 (331)
..|++++|...+....+ . .++ ..++.+++.+|.+|.. .+++++|+.+|++++... .+.+++.+
T Consensus 201 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~l 276 (514)
T 2gw1_A 201 SPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL----KNDPLGAHEDIKKAIELFPRVNSYIYM 276 (514)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH----SSCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCccHHHHHHH
Confidence 38999999988888877 2 111 2357789999999999 899999999999998764 38889999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCC
Q 020091 144 GLMYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDF 210 (331)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~ 210 (331)
|.++...|++++|+.+|++++...+... ..+++++|+.+|+++++. .++.+++.+|.+|.. .+
T Consensus 277 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 352 (514)
T 2gw1_A 277 ALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYR----EN 352 (514)
T ss_dssp HHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTT----TT
T ss_pred HHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHH----cC
Confidence 9999999999999999999999877666 678999999999999875 578899999999986 78
Q ss_pred CHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CC------HHHHHHHHHHHhc---c
Q 020091 211 NLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GH------GKAQLEHGLGLFT---E 277 (331)
Q Consensus 211 d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~------~~a~~~Lg~~~~~---~ 277 (331)
++++|+.+|+++++. +++.+++.+|.+|.. .+++++|+.+|+++... .+ ..+++.+|.++.. .
T Consensus 353 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 428 (514)
T 2gw1_A 353 KFDDCETLFSEAKRKFPEAPEVPNFFAEILTD----KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV 428 (514)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCT
T ss_pred CHHHHHHHHHHHHHHcccCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhc
Confidence 999999999999875 678899999999976 45999999999999875 33 3389999999999 9
Q ss_pred CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 278 GEMMKAVVYLELATRAGE--TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 278 ~~~~~A~~~~~~A~~~~~--~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
|++++|+.+|+++++..+ ..+...++.++ ...++.++|...+++.++..|.
T Consensus 429 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMK--LQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp THHHHHHHHHHHHHHHCTTCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHCSS
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHH--HHhcCHHHHHHHHHHHHHhccc
Confidence 999999999999998765 44445555444 5667888999999998887775
No 35
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.79 E-value=2.2e-17 Score=138.82 Aligned_cols=197 Identities=14% Similarity=0.074 Sum_probs=135.7
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCH
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANA 176 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 176 (331)
.++.+++.+|.++.. .+++++|+.+|++++.. +++.+++.+|.++...|++++|+.+|++++...+
T Consensus 6 ~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-------- 73 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMR----GQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-------- 73 (225)
T ss_dssp HHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------
T ss_pred ccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--------
Confidence 356777778888877 78888888888887765 3677788888888888888888888887777654
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHH--C--CCHHHHHHHHHHHhcCCCccccHHHH
Q 020091 177 EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVD-FNLQEAARWYLRAAE--G--GYVRAMYNTSLCYSFGEGLPLSHRQA 251 (331)
Q Consensus 177 ~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~-~d~~~A~~~~~~A~~--~--~~~~a~~~lg~~y~~g~g~~~~~~~A 251 (331)
.++.+++.+|.+|.. . +++++|+.+|+++++ . ++..+++.+|.+|.. .+++++|
T Consensus 74 -------------~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A 132 (225)
T 2vq2_A 74 -------------DSAEINNNYGWFLCG----RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK----QGQFGLA 132 (225)
T ss_dssp -------------TCHHHHHHHHHHHHT----TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH----TTCHHHH
T ss_pred -------------CChHHHHHHHHHHHH----hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH----cCCHHHH
Confidence 366677777777765 6 677777777777776 2 235667777777755 3477777
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhhhchhcHHHHHHHHHhhhc
Q 020091 252 RKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE---TAADHVKNVILQQLSATSRDRAMLVVDSWRA 326 (331)
Q Consensus 252 ~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~---~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~ 326 (331)
+.+|++++.. .+..+++.+|.++...|++++|+.+|+++++..+ ......+..+ ....++.+++...++.+.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 133 EAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKI--AKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH--HHhcCcHHHHHHHHHHHHH
Confidence 7777777665 4466777777777777777777777777766533 3333333322 3344555667777777665
Q ss_pred CCCC
Q 020091 327 MPSL 330 (331)
Q Consensus 327 ~~~~ 330 (331)
..|.
T Consensus 211 ~~p~ 214 (225)
T 2vq2_A 211 NFPY 214 (225)
T ss_dssp HCTT
T ss_pred hCCC
Confidence 5554
No 36
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.79 E-value=8e-18 Score=159.55 Aligned_cols=197 Identities=16% Similarity=0.066 Sum_probs=163.4
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCcc
Q 020091 98 LREAMVLLRWGKRFKHGRGVRKNL-DKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPA 174 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~~~-~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 174 (331)
..++.+++.+|.+|.. .+++ ++|+.+|++|++.. ++.+++.||.+|...|++++|+.+|+++++..+
T Consensus 99 ~~~a~~~~~lg~~~~~----~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p------ 168 (474)
T 4abn_A 99 QVEAQALMLKGKALNV----TPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCK------ 168 (474)
T ss_dssp CCCHHHHHHHHHHHTS----SSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCC------
T ss_pred chhHHHHHHHHHHHHh----ccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------
Confidence 3589999999999999 8999 99999999999874 899999999999999999999999999999875
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-CCCCC----CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcC-----C
Q 020091 175 NAEEAVKLLYQASIAGHVRAQYQLALCLHR-GRGVD----FNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFG-----E 242 (331)
Q Consensus 175 ~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~-G~g~~----~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g-----~ 242 (331)
++.+++++|.+|.. +.+.. +++++|+.+|++|++. ++..+++++|.+|..- .
T Consensus 169 ----------------~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~ 232 (474)
T 4abn_A 169 ----------------NKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQ 232 (474)
T ss_dssp ----------------CHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ----------------CHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 37889999999987 11111 8999999999999875 7789999999999651 1
Q ss_pred CccccHHHHHHHHHHHHHc-----CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhhhchhcHH
Q 020091 243 GLPLSHRQARKWMKRAADC-----GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAADHVKNVILQQLSATSRD 315 (331)
Q Consensus 243 g~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~--~~~a~~~l~~~~~~l~~~~~~ 315 (331)
..+++++|+.+|++++.. .++.+++++|.+|...|++++|+.+|++|++.. +..+..+++.++..+. +.+
T Consensus 233 -~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg--~~~ 309 (474)
T 4abn_A 233 -NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLS--RLT 309 (474)
T ss_dssp -CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HHH
T ss_pred -ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH--HHH
Confidence 115899999999999875 467899999999999999999999999999875 4566667776665553 445
Q ss_pred HHHHHHHh
Q 020091 316 RAMLVVDS 323 (331)
Q Consensus 316 ~a~~~~~~ 323 (331)
+|.+.+.+
T Consensus 310 eAi~~~~~ 317 (474)
T 4abn_A 310 SLLESKGK 317 (474)
T ss_dssp HHHHHTTT
T ss_pred HHHHHhcc
Confidence 66654443
No 37
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.79 E-value=2.1e-17 Score=148.63 Aligned_cols=219 Identities=14% Similarity=0.062 Sum_probs=187.0
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC------
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA------ 171 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~------ 171 (331)
++.+++.+|.++.. .+++++|+.+|++++... ++.+++.+|.++...|++++|+.+|++++...+...
T Consensus 2 ~~~~~~~~~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 77 (359)
T 3ieg_A 2 DVEKHLELGKKLLA----AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQR 77 (359)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 47889999999999 899999999999998764 899999999999999999999999999999877655
Q ss_pred -----CccCHHHHHHHHHHHHHC-----CCHHHHHHH------------HHHHhcCCCCCCCHHHHHHHHHHHHHC--CC
Q 020091 172 -----QPANAEEAVKLLYQASIA-----GHVRAQYQL------------ALCLHRGRGVDFNLQEAARWYLRAAEG--GY 227 (331)
Q Consensus 172 -----~~~~~~~A~~~~~~a~~~-----~~~~a~~~l------------g~~y~~G~g~~~d~~~A~~~~~~A~~~--~~ 227 (331)
..+++++|+.+|+++++. +++.++..+ |.++.. .+++++|+.+|+++++. ++
T Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~ 153 (359)
T 3ieg_A 78 GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFD----GADYTAAITFLDKILEVCVWD 153 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCc
Confidence 789999999999999875 345666666 677776 78999999999999875 67
Q ss_pred HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--HHHHHHH-
Q 020091 228 VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAADHVK- 302 (331)
Q Consensus 228 ~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~--~~a~~~l- 302 (331)
+.++..+|.+|.. .+++++|+.+|++++.. .++.+++.+|.++...|++++|+.+|+++++..+ ..+...+
T Consensus 154 ~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (359)
T 3ieg_A 154 AELRELRAECFIK----EGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK 229 (359)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 8999999999976 55999999999999987 5689999999999999999999999999998754 3333222
Q ss_pred ---------HHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 303 ---------NVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 303 ---------~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
..+......++.++|...+++..+..|.
T Consensus 230 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 266 (359)
T 3ieg_A 230 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS 266 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 2244456678889999999998876664
No 38
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.79 E-value=1.5e-17 Score=143.07 Aligned_cols=194 Identities=12% Similarity=-0.031 Sum_probs=157.8
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHH
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLM 146 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~ 146 (331)
+..+...+..|++++|...+.+.++..+ .++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+
T Consensus 41 ~~~a~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 41 IQLGLGYLQRGNTEQAKVPLRKALEIDP--SSADAHAALAVVFQT----EMEPKLADEEYRKALASDSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHTTCTGGGHHHHHHHHHHCT--TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHH
Confidence 4455556778888999888888887754 368888889988888 88999999999988876 378888889999
Q ss_pred HhcCCCHHHHHHHHHHHHH--cCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 147 YWEMDKKEAAISLYRQAAV--LGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
+...|++++|+.+|++++. ..+ .++.+++.+|.+|.. .+++++|+.+|+++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~---------------------~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~ 169 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYP---------------------ERSRVFENLGLVSLQ----MKKPAQAKEYFEKSLR 169 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCT---------------------THHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCc---------------------ccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Confidence 9888888888888888877 322 467888899998876 7889999999999876
Q ss_pred C--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHH
Q 020091 225 G--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA 297 (331)
Q Consensus 225 ~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~ 297 (331)
. .+..++..+|.+|.. .+++++|..+|+++... .+..++..++.++...|++++|..+++++.+..+..
T Consensus 170 ~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 170 LNRNQPSVALEMADLLYK----EREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HCSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred cCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 5 568888899998876 45899999999998876 467788888998999999999999999998876543
No 39
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.78 E-value=9.5e-18 Score=143.07 Aligned_cols=201 Identities=17% Similarity=0.145 Sum_probs=161.1
Q ss_pred HHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHH
Q 020091 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAG 144 (331)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg 144 (331)
..+..+...+..|++++|...+.+.++..+ .++.+++.+|.+|.. .+++++|+.+|+++++.. ++.+++.+|
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la 98 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENK--EDAIPYINFANLLSS----VNELERALAFYDKALELDSSAATAYYGAG 98 (243)
T ss_dssp -----------------CCTTHHHHHTTCT--TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 345555667788999999888877776544 479999999999999 899999999999998864 889999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 145 LMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
.++...|++++|+.+|++++...+ .++.+++.+|.+|.. .+++++|+.+|+++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~---------------------~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~ 153 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGM---------------------ENGDLFYMLGTVLVK----LEQPKLALPYLQRAVE 153 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTC---------------------CSHHHHHHHHHHHHH----TSCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHH----hccHHHHHHHHHHHHH
Confidence 999999999999999999998865 478899999999987 7899999999999987
Q ss_pred C--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--HHH
Q 020091 225 G--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAA 298 (331)
Q Consensus 225 ~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~--~~a 298 (331)
. ++..++..+|.+|.. .+++++|+.+|+++... .+..++..+|.++...|++++|+.+|+++++..+ ..+
T Consensus 154 ~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 229 (243)
T 2q7f_A 154 LNENDTEARFQFGMCLAN----EGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLA 229 (243)
T ss_dssp HCTTCHHHHHHHHHHHHH----HTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHH
T ss_pred hCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHH
Confidence 5 678999999999976 55999999999999877 5678899999999999999999999999998754 444
Q ss_pred HHHH
Q 020091 299 DHVK 302 (331)
Q Consensus 299 ~~~l 302 (331)
...+
T Consensus 230 ~~~~ 233 (243)
T 2q7f_A 230 LHAK 233 (243)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 40
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.78 E-value=1.7e-17 Score=158.13 Aligned_cols=237 Identities=13% Similarity=0.001 Sum_probs=145.0
Q ss_pred hHHHhHHHHHHHHHHhCCCCC-----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhcCCCH
Q 020091 80 QLRAASLVCKSWNDALRPLRE-----AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMVDAGLMYWEMDKK 153 (331)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~~~~-----~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~~~~~~~~ 153 (331)
++.+|...+...++..++... +.+++.+|.++.. .+++++|+.+|++++... .+.+++.+|.++...|++
T Consensus 217 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL----KNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENS 292 (537)
T ss_dssp HHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh----cccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCH
Confidence 566666666665555443211 3356666777666 677777777777776653 456667777777777777
Q ss_pred HHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 020091 154 EAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYL 220 (331)
Q Consensus 154 ~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~ 220 (331)
++|+.+|++++...+... ..+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+
T Consensus 293 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~ 368 (537)
T 3fp2_A 293 QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK----QGKFTESEAFFN 368 (537)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH----TTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHH
Confidence 777777777776655544 566777777777776553 456677777777765 566777777777
Q ss_pred HHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC--C------HHHHHHHHHHHhcc----------CCH
Q 020091 221 RAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--H------GKAQLEHGLGLFTE----------GEM 280 (331)
Q Consensus 221 ~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~------~~a~~~Lg~~~~~~----------~~~ 280 (331)
++++. +++.++..+|.+|.. .+++++|+.+|++++... + ....+.+|.++... |++
T Consensus 369 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 444 (537)
T 3fp2_A 369 ETKLKFPTLPEVPTFFAEILTD----RGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444 (537)
T ss_dssp HHHHHCTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHH----hCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHH
Confidence 77654 456666777777654 336777777777766542 1 12345556666666 777
Q ss_pred HHHHHHHHHHHHcCC--HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 281 MKAVVYLELATRAGE--TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 281 ~~A~~~~~~A~~~~~--~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
++|+.+|+++++..+ ..+..+++.++ ...++.++|...+++..+..|.
T Consensus 445 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 445 NAAIKLLTKACELDPRSEQAKIGLAQLK--LQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHH--HHhccHHHHHHHHHHHHHhCCC
Confidence 777777777766543 33444444443 3445566676667666655543
No 41
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.78 E-value=2.5e-17 Score=159.30 Aligned_cols=237 Identities=14% Similarity=-0.035 Sum_probs=202.0
Q ss_pred CCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHH
Q 020091 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKE 154 (331)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~ 154 (331)
..|++++|..++....+. ..++.+++.+|.+|.. .+++++|+.+|+++...+ +..++..++.++...|+.+
T Consensus 284 ~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 356 (597)
T 2xpi_A 284 HEDELRRAEDYLSSINGL---EKSSDLLLCKADTLFV----RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKN 356 (597)
T ss_dssp THHHHHHHHHHHHTSTTG---GGCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHH
T ss_pred CcchHHHHHHHHHHhhcC---CchHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHH
Confidence 568888997666544443 3589999999999999 899999999999998764 7888999999999999999
Q ss_pred HHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 020091 155 AAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLR 221 (331)
Q Consensus 155 ~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~ 221 (331)
+|+..|++++...+... ..+++++|+.+|+++++ +.++.+++.+|.+|.. .+++++|+++|++
T Consensus 357 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 357 KLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAI----EGEHDQAISAYTT 432 (597)
T ss_dssp HHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Confidence 99999999998766554 78999999999999876 4689999999999987 7899999999999
Q ss_pred HHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----
Q 020091 222 AAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA---- 293 (331)
Q Consensus 222 A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~---- 293 (331)
+++. ++..++..+|.+|.. .+++++|..+|+++.+. .++.++..+|.+|...|++++|+.+|+++++.
T Consensus 433 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 508 (597)
T 2xpi_A 433 AARLFQGTHLPYLFLGMQHMQ----LGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT 508 (597)
T ss_dssp HHHTTTTCSHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHhCccchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence 9876 578899999999976 55999999999999876 56889999999999999999999999999886
Q ss_pred --CC---HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 294 --GE---TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 294 --~~---~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
.+ ..+...++.+ ....++.++|...+++..+..|.
T Consensus 509 ~~~p~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 509 QSNEKPWAATWANLGHA--YRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp CCCSGGGHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHSSC
T ss_pred ccchhhHHHHHHHHHHH--HHHhcCHHHHHHHHHHHHHhCCC
Confidence 33 3344444444 45678889999999998877664
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.78 E-value=4.7e-17 Score=139.91 Aligned_cols=196 Identities=17% Similarity=0.113 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHH
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEE 178 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 178 (331)
+.+++.+|.+|.. .+++++|+.+|++++... ++.+++.+|.++...|++++|+.+|++++...+
T Consensus 37 ~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~---------- 102 (252)
T 2ho1_A 37 RDAYIQLGLGYLQ----RGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS---------- 102 (252)
T ss_dssp HHHHHHHHHHHHH----TTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------
T ss_pred HHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc----------
Confidence 6778999999999 899999999999998764 899999999999999999999999999999866
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH--C--CCHHHHHHHHHHHhcCCCccccHHHHHHH
Q 020091 179 AVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--G--GYVRAMYNTSLCYSFGEGLPLSHRQARKW 254 (331)
Q Consensus 179 A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~--~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 254 (331)
.++.+++.+|.+|.. .+++++|+.+|+++++ . ++..++..+|.+|.. .+++++|..+
T Consensus 103 -----------~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~ 163 (252)
T 2ho1_A 103 -----------RNARVLNNYGGFLYE----QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ----MKKPAQAKEY 163 (252)
T ss_dssp -----------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred -----------CcHHHHHHHHHHHHH----HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH----cCCHHHHHHH
Confidence 478899999999987 7899999999999987 3 467889999999976 4599999999
Q ss_pred HHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 255 MKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 255 ~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~--~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
|+++... .+..+++.+|.++...|++++|+.+|+++++..+ ..+...++.++ ...++.++|...++++++..|.
T Consensus 164 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 164 FEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLA--KVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH--HHccCHHHHHHHHHHHHHHCCC
Confidence 9999886 4688999999999999999999999999998754 44455444444 4567889999999999888776
Q ss_pred C
Q 020091 331 H 331 (331)
Q Consensus 331 ~ 331 (331)
+
T Consensus 242 ~ 242 (252)
T 2ho1_A 242 S 242 (252)
T ss_dssp S
T ss_pred C
Confidence 3
No 43
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.77 E-value=2.1e-17 Score=141.83 Aligned_cols=210 Identities=12% Similarity=0.035 Sum_probs=163.9
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC-------C
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPA-------A 171 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~-------~ 171 (331)
.+.+++.+|.++.. .+++++|+.+|+++++. .++.+++.+|.++...|++++|+.+|+++++..+.. .
T Consensus 4 ~a~~~~~~g~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 79 (258)
T 3uq3_A 4 MADKEKAEGNKFYK----ARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVIS 79 (258)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHH
Confidence 46789999999999 89999999999999866 588999999999999999999999999999875532 1
Q ss_pred -----------CccCHHHHHHHHHHHHHCC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH
Q 020091 172 -----------QPANAEEAVKLLYQASIAG-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLC 237 (331)
Q Consensus 172 -----------~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~ 237 (331)
..+++++|+.+|+++++.. .+. ++.. .+++++|+.+|++++.. .+..++..+|.+
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 148 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTAD-------ILTK----LRNAEKELKKAEAEAYVNPEKAEEARLEGKE 148 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH-------HHHH----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhH-------HHHH----HhHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 4566666666666665542 222 2222 23356666666666655 356788999999
Q ss_pred HhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHH
Q 020091 238 YSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRD 315 (331)
Q Consensus 238 y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~ 315 (331)
|.. .+++++|+.+|++++.. .+..+++.+|.++...|++++|+.+|+++++..+......+.........++.+
T Consensus 149 ~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 149 YFT----KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYA 224 (258)
T ss_dssp HHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHH----hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHH
Confidence 976 45999999999999886 567889999999999999999999999999886544444444444445567888
Q ss_pred HHHHHHHhhhcCC
Q 020091 316 RAMLVVDSWRAMP 328 (331)
Q Consensus 316 ~a~~~~~~~~~~~ 328 (331)
+|...+++..+..
T Consensus 225 ~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 225 SALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999999987766
No 44
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=3e-18 Score=152.18 Aligned_cols=242 Identities=10% Similarity=-0.003 Sum_probs=162.7
Q ss_pred HhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCC
Q 020091 73 AASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDK 152 (331)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~ 152 (331)
...+..|++.+++..+..+....++ ...++.+.++.+|.. .|+++.|+..++.. ......++..++..+...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~-~~~e~~~~l~r~yi~----~g~~~~al~~~~~~-~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPE-RDVERDVFLYRAYLA----QRKYGVVLDEIKPS-SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHH-HHHHHHHHHHHHHHH----TTCHHHHHHHSCTT-SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccCCch-hhHHHHHHHHHHHHH----CCCHHHHHHHhccc-CChhHHHHHHHHHHHcCCCc
Confidence 3445566676664433322221111 012355566666666 66777777666542 22234455666666666677
Q ss_pred HHHHHHHHHHHHHcC--CCCC-----------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 020091 153 KEAAISLYRQAAVLG--DPAA-----------QPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWY 219 (331)
Q Consensus 153 ~~~A~~~~~~a~~~~--~~~~-----------~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~ 219 (331)
.++|+..|++.+..+ +... ..+++++|+.+|++ .+++.++..+|.+|.. .+++++|+.+|
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~----~g~~~~A~~~l 153 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ---GDSLECMAMTVQILLK----LDRLDLARKEL 153 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT---CCSHHHHHHHHHHHHH----TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC---CCCHHHHHHHHHHHHH----CCCHHHHHHHH
Confidence 777777777766543 2222 56677777777766 5789999999999987 78899999999
Q ss_pred HHHHHCCCHHHHHHHH--HHHh-cCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 020091 220 LRAAEGGYVRAMYNTS--LCYS-FGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 294 (331)
Q Consensus 220 ~~A~~~~~~~a~~~lg--~~y~-~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~ 294 (331)
+++++.........++ ++.. .+. +++++|+.+|+++++. .++.+++++|.++...|++++|...|+++++..
T Consensus 154 ~~~~~~~p~~~~~~l~~a~~~l~~~~---~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQDEDATLTQLATAWVSLAAGG---EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHCT---THHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhCcCcHHHHHHHHHHHHHhCc---hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9998764333333333 2221 233 4899999999999876 567889999999999999999999999999875
Q ss_pred --CHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCCC
Q 020091 295 --ETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 331 (331)
Q Consensus 295 --~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~~ 331 (331)
+..+..+++.++..+.+. .+.+...++++++.+|.|
T Consensus 231 p~~~~~l~~l~~~~~~~g~~-~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKP-PEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHCTTC
T ss_pred CCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCCC
Confidence 566667777666554332 234678889999999886
No 45
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.77 E-value=1e-17 Score=154.59 Aligned_cols=245 Identities=14% Similarity=0.038 Sum_probs=196.8
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCH----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--------C
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREA----MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--------G 135 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--------~ 135 (331)
.+..+...+..|++++|...+.+.++..++ ++ .+++.+|.+|.. .+++++|+.+|++++.. .
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE--DLRTLSAIYSQLGNAYFY----LGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--CHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc--ChhHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHccCchH
Confidence 345556678889999999999999888554 44 589999999999 89999999999999865 2
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------------CccC-----------------HHHHHH
Q 020091 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-----------------QPAN-----------------AEEAVK 181 (331)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------------~~~~-----------------~~~A~~ 181 (331)
.+.++..+|.+|...|++++|+.+|++++....... ..++ +++|+.
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 557889999999999999999999999987621111 5677 999999
Q ss_pred HHHHHHHC----C----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHhcCCCcc
Q 020091 182 LLYQASIA----G----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLP 245 (331)
Q Consensus 182 ~~~~a~~~----~----~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~g~g~~ 245 (331)
+|+++++. + ...++.++|.+|.. .+++++|+.+|+++++. ++ ..++.++|.+|.. .
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~ 276 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYL----LGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIF----L 276 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH----C
Confidence 99998653 2 35688999999987 78999999999999764 33 3478999999976 4
Q ss_pred ccHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcC----C----HHHHHHHHHHHhhh
Q 020091 246 LSHRQARKWMKRAADC----GH----GKAQLEHGLGLFTEGEMMKAVVYLELATRAG----E----TAADHVKNVILQQL 309 (331)
Q Consensus 246 ~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~----~----~~a~~~l~~~~~~l 309 (331)
+++++|+.+|+++... ++ ..++..+|.++...|++++|+.+|+++++.. + ..+...++.++ .
T Consensus 277 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~--~ 354 (411)
T 4a1s_A 277 GQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAH--S 354 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--H
T ss_pred cCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH--H
Confidence 5999999999999865 22 4678899999999999999999999998752 2 22445555554 4
Q ss_pred chhcHHHHHHHHHhhhcCC
Q 020091 310 SATSRDRAMLVVDSWRAMP 328 (331)
Q Consensus 310 ~~~~~~~a~~~~~~~~~~~ 328 (331)
..++.++|...+++.++..
T Consensus 355 ~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 355 AIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhccHHHHHHHHHHHHHHH
Confidence 5678889999998876543
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.77 E-value=1.3e-17 Score=142.20 Aligned_cols=197 Identities=17% Similarity=0.166 Sum_probs=154.3
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
.+.+++.+|.++.. .+++++|+.+|++++... ++.+++.+|.++...|++++|+.+|++++...+
T Consensus 22 ~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--------- 88 (243)
T 2q7f_A 22 ASMTGGQQMGRGSE----FGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS--------- 88 (243)
T ss_dssp ------------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------
Confidence 46778899999998 899999999999999864 899999999999999999999999999998865
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHH
Q 020091 178 EAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWM 255 (331)
Q Consensus 178 ~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 255 (331)
.++.+++.+|.+|.. .+++++|+.+|+++++. .+..++..+|.+|.. .+++++|+.+|
T Consensus 89 ------------~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~ 148 (243)
T 2q7f_A 89 ------------SAATAYYGAGNVYVV----KEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK----LEQPKLALPYL 148 (243)
T ss_dssp ------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH----TSCHHHHHHHH
T ss_pred ------------cchHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHHHHHH
Confidence 478999999999987 78999999999999875 578999999999976 45999999999
Q ss_pred HHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCCC
Q 020091 256 KRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 331 (331)
Q Consensus 256 ~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~--~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~~ 331 (331)
+++... .+..+++.+|.++...|++++|+.+|+++++..+ ..+...++.++ ...++.++|...+++.++..|.+
T Consensus 149 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~--~~~~~~~~A~~~~~~~~~~~p~~ 226 (243)
T 2q7f_A 149 QRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTY--AYKENREKALEMLDKAIDIQPDH 226 (243)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH--HHTTCTTHHHHHHHHHHHHCTTC
T ss_pred HHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH--HHccCHHHHHHHHHHHHccCcch
Confidence 999877 5688999999999999999999999999998754 45555555555 55677789999999988877753
No 47
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.77 E-value=8.6e-17 Score=136.69 Aligned_cols=174 Identities=16% Similarity=0.110 Sum_probs=108.0
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccC
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPAN 175 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~---~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 175 (331)
.++.+++.+|.++.. .+++++|+.+|+++++. .++.+++++|.++...|++++|+.+|++++...+
T Consensus 5 ~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------- 73 (228)
T 4i17_A 5 TDPNQLKNEGNDALN----AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY------- 73 (228)
T ss_dssp CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-------
T ss_pred cCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-------
Confidence 356666677777766 66777777777766654 3556666677777777777777776666666654
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHhcCCCccc
Q 020091 176 AEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYV-------RAMYNTSLCYSFGEGLPL 246 (331)
Q Consensus 176 ~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~-------~a~~~lg~~y~~g~g~~~ 246 (331)
+++.+++++|.+|.. .+++++|+.+|+++++. ++. .+++.+|.++.. .+
T Consensus 74 --------------~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~----~~ 131 (228)
T 4i17_A 74 --------------NLANAYIGKSAAYRD----MKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQ----AG 131 (228)
T ss_dssp --------------SHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH----TT
T ss_pred --------------chHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHH----hc
Confidence 355666666666655 55666666666666553 333 446666666644 33
Q ss_pred cHHHHHHHHHHHHHcCC----HHHHHHHHHHHhccCCH---------------------------HHHHHHHHHHHHcCC
Q 020091 247 SHRQARKWMKRAADCGH----GKAQLEHGLGLFTEGEM---------------------------MKAVVYLELATRAGE 295 (331)
Q Consensus 247 ~~~~A~~~~~~a~~~~~----~~a~~~Lg~~~~~~~~~---------------------------~~A~~~~~~A~~~~~ 295 (331)
++++|+.+|+++++..+ ..++++||.+|...|+. ++|+.+|+++++..+
T Consensus 132 ~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 132 NIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp CHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 66666666666665533 25556666666655554 888888888887654
Q ss_pred --HHHHHHHHHH
Q 020091 296 --TAADHVKNVI 305 (331)
Q Consensus 296 --~~a~~~l~~~ 305 (331)
..+...+..+
T Consensus 212 ~~~~~~~~l~~i 223 (228)
T 4i17_A 212 NRTEIKQMQDQV 223 (228)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 4444444433
No 48
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.76 E-value=1.9e-17 Score=151.72 Aligned_cols=248 Identities=14% Similarity=0.019 Sum_probs=197.4
Q ss_pred hHHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCC--HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----C---
Q 020091 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLRE--AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G--- 135 (331)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~--- 135 (331)
....+..+...+..|++.+|...+.+.++..++... +.+++.+|.+|.. .+++++|+.+|++++.. +
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY----LHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhccccH
Confidence 344556666778899999999999998888554211 4689999999999 89999999999998765 2
Q ss_pred -CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------------CccC--------------------HH
Q 020091 136 -STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-----------------QPAN--------------------AE 177 (331)
Q Consensus 136 -~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------------~~~~--------------------~~ 177 (331)
.+.++..+|.+|...|++++|+.+|+++++..+... ..++ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 356889999999999999999999999987633221 5666 99
Q ss_pred HHHHHHHHHHHC----C----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHhcC
Q 020091 178 EAVKLLYQASIA----G----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFG 241 (331)
Q Consensus 178 ~A~~~~~~a~~~----~----~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~g 241 (331)
+|+.+|+++++. + .+.++.++|.+|.. .+++++|+.+|+++++. ++ ..++.++|.+|..
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~- 239 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF- 239 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH-
Confidence 999999998653 2 35678999999987 78999999999999764 33 3478999999976
Q ss_pred CCccccHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CC----HHHHHHHHHH
Q 020091 242 EGLPLSHRQARKWMKRAADC----GH----GKAQLEHGLGLFTEGEMMKAVVYLELATRA----GE----TAADHVKNVI 305 (331)
Q Consensus 242 ~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~----~~----~~a~~~l~~~ 305 (331)
.+++++|..+|+++... ++ ..++..+|.++...|++++|+.+|+++++. ++ ..+...++.+
T Consensus 240 ---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 316 (406)
T 3sf4_A 240 ---LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNA 316 (406)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---cCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 45999999999999864 22 467789999999999999999999999875 22 3344455555
Q ss_pred HhhhchhcHHHHHHHHHhhhc
Q 020091 306 LQQLSATSRDRAMLVVDSWRA 326 (331)
Q Consensus 306 ~~~l~~~~~~~a~~~~~~~~~ 326 (331)
+ ...++.++|...+++.++
T Consensus 317 ~--~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 317 Y--TALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp H--HHHTCHHHHHHHHHHHHH
T ss_pred H--HHcCCHHHHHHHHHHHHH
Confidence 4 456778899988888654
No 49
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.76 E-value=4e-17 Score=144.97 Aligned_cols=249 Identities=14% Similarity=0.025 Sum_probs=196.8
Q ss_pred HHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCC--HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----C----C
Q 020091 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLRE--AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G----S 136 (331)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~----~ 136 (331)
..+..+...+..|++++|...+.+.++..++... +.+++.+|.+|.. .+++++|+.+|+++... + .
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY----LHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 3445566677889999999999998887544211 5788999999999 89999999999998765 2 4
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------------CccC--------------------HHHH
Q 020091 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-----------------QPAN--------------------AEEA 179 (331)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------------~~~~--------------------~~~A 179 (331)
+.++..+|.++...|++++|+.+|+++++..+... ..++ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 56789999999999999999999999987633222 4566 9999
Q ss_pred HHHHHHHHHC----C----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHhcCCC
Q 020091 180 VKLLYQASIA----G----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEG 243 (331)
Q Consensus 180 ~~~~~~a~~~----~----~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~g~g 243 (331)
+.+++++++. + .+.++.++|.+|.. .+++++|+.+|+++++. ++ ..++.++|.+|..
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~--- 235 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF--- 235 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH---
Confidence 9999998653 2 35578899999987 78999999999999764 33 3478899999976
Q ss_pred ccccHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHh
Q 020091 244 LPLSHRQARKWMKRAADC----GH----GKAQLEHGLGLFTEGEMMKAVVYLELATRA----GE----TAADHVKNVILQ 307 (331)
Q Consensus 244 ~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~----~~----~~a~~~l~~~~~ 307 (331)
.+++++|..+|+++... ++ ..++..+|.++...|++++|+.+|+++++. ++ ..+...++.++
T Consensus 236 -~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~- 313 (338)
T 3ro2_A 236 -LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY- 313 (338)
T ss_dssp -HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-
T ss_pred -cCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-
Confidence 55999999999999764 22 567789999999999999999999999875 32 22444555544
Q ss_pred hhchhcHHHHHHHHHhhhcCCC
Q 020091 308 QLSATSRDRAMLVVDSWRAMPS 329 (331)
Q Consensus 308 ~l~~~~~~~a~~~~~~~~~~~~ 329 (331)
...++.++|...+++..+..+
T Consensus 314 -~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 314 -TALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp -HHHTCHHHHHHHHHHHHHC--
T ss_pred -HHcCChHHHHHHHHHHHHHHH
Confidence 456788999999999876654
No 50
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.76 E-value=4.8e-17 Score=133.45 Aligned_cols=164 Identities=16% Similarity=0.010 Sum_probs=144.7
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHH
Q 020091 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEA 215 (331)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A 215 (331)
++..+++||.+|...|++++|+.+|+++++.+| +++.+++++|.+|.. .+++++|
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p---------------------~~~~~~~~la~~~~~----~~~~~~a 58 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP---------------------NNVETLLKLGKTYMD----IGLPNDA 58 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHH----TTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHH----CCCHHHH
Confidence 678899999999999999999999999999877 589999999999987 7899999
Q ss_pred HHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 020091 216 ARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELAT 291 (331)
Q Consensus 216 ~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~ 291 (331)
+.++.++... .+..++..+|.++.. ..+++.|..++.++... .+..++..+|.+|...|++++|+.+|++++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l 134 (184)
T 3vtx_A 59 IESLKKFVVLDTTSAEAYYILGSANFM----IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTI 134 (184)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 9999999765 678999999999976 55999999999999876 568899999999999999999999999999
Q ss_pred HcCC--HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 292 RAGE--TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 292 ~~~~--~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
+.++ ..+..+++.++ ...++.++|...+++.++..|.
T Consensus 135 ~~~p~~~~~~~~lg~~~--~~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 135 SIKPGFIRAYQSIGLAY--EGKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp HHCTTCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHTTHH
T ss_pred HhcchhhhHHHHHHHHH--HHCCCHHHHHHHHHHHHhCCcc
Confidence 9865 55555655555 5567889999999999888774
No 51
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=6e-17 Score=143.98 Aligned_cols=216 Identities=15% Similarity=-0.001 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-------
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA------- 171 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~------- 171 (331)
+..++.+|.++.. .+++++|+.+|+++++. +++.+++.+|.++...|++++|+.+|++++...+...
T Consensus 21 ~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 96 (327)
T 3cv0_A 21 HENPMEEGLSMLK----LANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA 96 (327)
T ss_dssp SSCHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHH
Confidence 4567889999999 89999999999999876 4899999999999999999999999999999977655
Q ss_pred ----CccCHHHHHHHHHHHHHC--CCHHHHHHH--------------HH-HHhcCCCCCCCHHHHHHHHHHHHHC--CCH
Q 020091 172 ----QPANAEEAVKLLYQASIA--GHVRAQYQL--------------AL-CLHRGRGVDFNLQEAARWYLRAAEG--GYV 228 (331)
Q Consensus 172 ----~~~~~~~A~~~~~~a~~~--~~~~a~~~l--------------g~-~y~~G~g~~~d~~~A~~~~~~A~~~--~~~ 228 (331)
..+++++|+.+|+++++. .+...+..+ |. ++.. .+++++|+.+|+++++. .+.
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~ 172 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAA----PNEYRECRTLLHAALEMNPNDA 172 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTS----HHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHH----cccHHHHHHHHHHHHhhCCCCH
Confidence 788999999999999875 344444444 44 3443 67899999999999875 578
Q ss_pred HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Q 020091 229 RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAADHVKNV 304 (331)
Q Consensus 229 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~--~~a~~~l~~ 304 (331)
.++..+|.+|.. .+++++|+.+|+++... .+..++..+|.++...|++++|+.+|+++++..+ ..+..+++.
T Consensus 173 ~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 248 (327)
T 3cv0_A 173 QLHASLGVLYNL----SNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAV 248 (327)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999976 45999999999999876 4678899999999999999999999999998765 455555555
Q ss_pred HHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 305 ILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 305 ~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
++ ...++.++|...+++..+..|.
T Consensus 249 ~~--~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 249 SY--SNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HH--HHTTCHHHHHHHHHHHHHHHTT
T ss_pred HH--HHhccHHHHHHHHHHHHHhCCc
Confidence 54 5667889999999998766654
No 52
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=1.8e-16 Score=148.96 Aligned_cols=204 Identities=12% Similarity=-0.058 Sum_probs=162.1
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 020091 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-----------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (331)
...+..+..||.+|.. .|++++|+++|++|++. ....++.++|.+|...|++++|+.+|++++.+
T Consensus 48 ~~~a~~yn~Lg~~~~~----~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i 123 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHL----KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHV 123 (472)
T ss_dssp --CCHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 3456778899999999 89999999999999864 24667899999999999999999999999875
Q ss_pred CCCCC---------------------CccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHH
Q 020091 167 GDPAA---------------------QPANAEEAVKLLYQASI--AGHVRAQYQLALCLHR-GRGVDFNLQEAARWYLRA 222 (331)
Q Consensus 167 ~~~~~---------------------~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~-G~g~~~d~~~A~~~~~~A 222 (331)
..... ..+++++|+.+|+++++ +++++++..+|.++.. | ..++.++|++.|++|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~--~~~~~~~al~~~~~a 201 (472)
T 4g1t_A 124 CEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLD--NWPPSQNAIDPLRQA 201 (472)
T ss_dssp HHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH--HSCCCCCTHHHHHHH
T ss_pred hHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--CchHHHHHHHHHHHH
Confidence 22111 34679999999999976 5789999999987643 1 145678899999999
Q ss_pred HHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CH
Q 020091 223 AEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ET 296 (331)
Q Consensus 223 ~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~--~~ 296 (331)
++. ++..++.++|..+..-....+++++|..+|+++... .+..++.++|.+|...|++++|+.+|++|++.. +.
T Consensus 202 l~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 281 (472)
T 4g1t_A 202 IRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNA 281 (472)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred hhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChH
Confidence 875 678889999988755333456889999999999876 568899999999999999999999999999875 45
Q ss_pred HHHHHHHHHHh
Q 020091 297 AADHVKNVILQ 307 (331)
Q Consensus 297 ~a~~~l~~~~~ 307 (331)
.+..+++.++.
T Consensus 282 ~~~~~lg~~y~ 292 (472)
T 4g1t_A 282 YLHCQIGCCYR 292 (472)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666553
No 53
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=1.1e-16 Score=150.30 Aligned_cols=248 Identities=13% Similarity=-0.006 Sum_probs=179.9
Q ss_pred hccCCchHHHhHHHHHHHHHHh-------CCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----------CC
Q 020091 74 ASFTLPQLRAASLVCKSWNDAL-------RPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----------GS 136 (331)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----------~~ 136 (331)
..+..|++++|+..+.+.++.. .+...+.++.++|.+|.. .+++++|+.+|+++... ..
T Consensus 60 ~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~----~g~~~~A~~~~~ka~~i~~~~~~~~~~~~ 135 (472)
T 4g1t_A 60 LKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYH----MGRLSDVQIYVDKVKHVCEKFSSPYRIES 135 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCSSCCCC
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHhHhcccccchhh
Confidence 3456799999988887766542 234457788999999999 89999999999998753 36
Q ss_pred HHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCCCC-------------------------------------------
Q 020091 137 TLAMVDAGLMYWE--MDKKEAAISLYRQAAVLGDPAA------------------------------------------- 171 (331)
Q Consensus 137 ~~a~~~lg~~~~~--~~~~~~A~~~~~~a~~~~~~~~------------------------------------------- 171 (331)
+.++.++|..+.. .+++++|+.+|++++++.|...
T Consensus 136 ~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l 215 (472)
T 4g1t_A 136 PELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLL 215 (472)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHH
Confidence 7788888876654 4689999999999998876654
Q ss_pred ---------CccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q 020091 172 ---------QPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCY 238 (331)
Q Consensus 172 ---------~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y 238 (331)
..+++++|+.+|++++. +.++.++.++|.+|.. .+++++|+.+|++|++. +++.+++++|.+|
T Consensus 216 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y 291 (472)
T 4g1t_A 216 ALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR----KDEPDKAIELLKKALEYIPNNAYLHCQIGCCY 291 (472)
T ss_dssp HHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH----cCchHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 23455667777777654 3567777788887776 67788888888888664 5677788888887
Q ss_pred hcCC-----------C----ccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHH---
Q 020091 239 SFGE-----------G----LPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA--- 298 (331)
Q Consensus 239 ~~g~-----------g----~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a--- 298 (331)
.... + ....+++|+.+|+++... .+..+++.+|.+|...|++++|+.+|+++++......
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~ 371 (472)
T 4g1t_A 292 RAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQ 371 (472)
T ss_dssp HHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHH
Confidence 5310 0 113456778888887765 4466788899999999999999999999998754322
Q ss_pred --HHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 299 --DHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 299 --~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
...++.+. ....++.++|+..+++.++..|.
T Consensus 372 ~~~~~~~~~~-~~~~~~~~~Ai~~y~kal~i~~~ 404 (472)
T 4g1t_A 372 LLHLRYGNFQ-LYQMKCEDKAIHHFIEGVKINQK 404 (472)
T ss_dssp HHHHHHHHHH-HHTSSCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHH-HHHCCCHHHHHHHHHHHHhcCcc
Confidence 23333332 34567788999999998888775
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.74 E-value=4.2e-16 Score=135.30 Aligned_cols=230 Identities=13% Similarity=0.000 Sum_probs=171.6
Q ss_pred cCCchHHHhHHHHHHHHHHhCC--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCC
Q 020091 76 FTLPQLRAASLVCKSWNDALRP--LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMD 151 (331)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~ 151 (331)
...+++++|+..+...++..+. ..++.+++.+|.+|.. .+++++|+.+|++++... ++.+++.+|.+|...|
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDS----LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHH----cccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc
Confidence 3457889998888777765321 2367899999999999 899999999999999874 8999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 020091 152 KKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARW 218 (331)
Q Consensus 152 ~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~~A~~~ 218 (331)
++++|+.+|++++...+... ..+++++|+.+|+++++. +++.....++.++. .+++++|+.+
T Consensus 92 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~~~~~A~~~ 166 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQ-----KLDEKQAKEV 166 (275)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----HHCHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-----hcCHHHHHHH
Confidence 99999999999999887665 788899999999998764 56666666665554 4679999999
Q ss_pred HHHHHHCC-CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC------HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 020091 219 YLRAAEGG-YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH------GKAQLEHGLGLFTEGEMMKAVVYLELAT 291 (331)
Q Consensus 219 ~~~A~~~~-~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~~~~~~~~~~A~~~~~~A~ 291 (331)
|++++... .....+.++.++.. . .+.++|+..+++++.... ..+++.+|.+|...|++++|+.+|++++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 167 LKQHFEKSDKEQWGWNIVEFYLG-N---ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp HHHHHHHSCCCSTHHHHHHHHTT-S---SCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCcchHHHHHHHHHHH-h---cCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 98887652 22223345555533 2 366889999998876533 5778899999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHhhhchhcHHHHHHHH
Q 020091 292 RAGETAADHVKNVILQQLSATSRDRAMLVV 321 (331)
Q Consensus 292 ~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~ 321 (331)
+.++.... ..+..+ ...++.+++++.+
T Consensus 243 ~~~p~~~~-~~~~~~--~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 243 ANNVHNFV-EHRYAL--LELSLLGQDQDDL 269 (275)
T ss_dssp TTCCTTCH-HHHHHH--HHHHHHHHC----
T ss_pred hCCchhHH-HHHHHH--HHHHHHHhhHHHH
Confidence 88764422 222222 3344555555443
No 55
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.73 E-value=4.8e-17 Score=161.11 Aligned_cols=161 Identities=18% Similarity=0.058 Sum_probs=141.0
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHH
Q 020091 135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQE 214 (331)
Q Consensus 135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~ 214 (331)
++++++++||.+|...|++++|+.+|++|+++.+ +++.++++||.+|.. .+++++
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P---------------------~~~~a~~nLg~~l~~----~g~~~e 61 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFP---------------------EFAAAHSNLASVLQQ----QGKLQE 61 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---------------------CCHHHHHHHHHHHHH----TTCHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHH----cCCHHH
Confidence 3678999999999999999999999999999876 689999999999987 889999
Q ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 020091 215 AARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELA 290 (331)
Q Consensus 215 A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A 290 (331)
|+.+|++|++. +++.++++||.+|.. .+++++|+.+|++|++. ++..++++||.+|...|++++|+.+|++|
T Consensus 62 A~~~~~~Al~l~P~~~~a~~nLg~~l~~----~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A 137 (723)
T 4gyw_A 62 ALMHYKEAIRISPTFADAYSNMGNTLKE----MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTA 137 (723)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999875 789999999999976 55999999999999987 67899999999999999999999999999
Q ss_pred HHcC--CHHHHHHHHHHHhhhchhcHHHHHHHHHhhhc
Q 020091 291 TRAG--ETAADHVKNVILQQLSATSRDRAMLVVDSWRA 326 (331)
Q Consensus 291 ~~~~--~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~ 326 (331)
++.+ +..+..+++.++..+ ++.++|.+.++++++
T Consensus 138 l~l~P~~~~a~~~L~~~l~~~--g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 138 LKLKPDFPDAYCNLAHCLQIV--CDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHCSCCHHHHHHHHHHHHHT--TCCTTHHHHHHHHHH
T ss_pred HHhCCCChHHHhhhhhHHHhc--ccHHHHHHHHHHHHH
Confidence 9875 567777777777655 444566666666554
No 56
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.72 E-value=2.9e-16 Score=136.37 Aligned_cols=197 Identities=12% Similarity=0.036 Sum_probs=157.9
Q ss_pred HHHHhccCCchHHHhHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHH
Q 020091 70 NKIAASFTLPQLRAASLVCKSWNDALRPLR-EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLM 146 (331)
Q Consensus 70 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~ 146 (331)
..+...+..|++++|+..+...++...+.. .+.+++.+|.+|.. .+++++|+.+|+++++. .++.++..+|.+
T Consensus 42 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 117 (272)
T 3u4t_A 42 RRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK----KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSY 117 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH----cccHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 344456778999999988888887322211 35679999999999 89999999999999986 488999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHH
Q 020091 147 YWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQ 213 (331)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~ 213 (331)
|...|++++|+.+|+++++..+... ...++++|+.+|+++++. .++.+++.+|.++..- +...+++
T Consensus 118 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~-~~~~~~~ 196 (272)
T 3u4t_A 118 FYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQ-DPDTKQG 196 (272)
T ss_dssp HHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-STTCSSC
T ss_pred HHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc-CcchhhH
Confidence 9999999999999999999866554 456999999999999874 6789999999999761 1123388
Q ss_pred HHHHHHHHHHHC----CC------HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 020091 214 EAARWYLRAAEG----GY------VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLF 275 (331)
Q Consensus 214 ~A~~~~~~A~~~----~~------~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~ 275 (331)
+|+.+|+++++. ++ ..++..+|.+|.. .+++++|+.+|+++++. +++.+.-.++.+..
T Consensus 197 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 197 LAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI----NRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp TTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 999999999875 22 3688899999976 45999999999999877 56778777776543
No 57
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.72 E-value=2.7e-16 Score=148.96 Aligned_cols=194 Identities=12% Similarity=0.023 Sum_probs=167.8
Q ss_pred hHHHHHHHHhccCCchH-HHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHH
Q 020091 65 PFDVLNKIAASFTLPQL-RAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMVD 142 (331)
Q Consensus 65 ~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~ 142 (331)
+...+..+...+..|++ ++|+..+.+.++..+ .++.+++.||.+|.. .+++++|+.+|+++++.. ++.++.+
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~ 175 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP--ELVEAWNQLGEVYWK----KGDVTSAHTCFSGALTHCKNKVSLQN 175 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCHHHHHH
Confidence 33445566667888999 999999999888865 479999999999999 899999999999999885 6899999
Q ss_pred HHHHHhcC---------CCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-----CCCC
Q 020091 143 AGLMYWEM---------DKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHR-----GRGV 208 (331)
Q Consensus 143 lg~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~-----G~g~ 208 (331)
||.+|... |++++|+.+|++++++.+ +++.++++||.+|.. |. .
T Consensus 176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p---------------------~~~~~~~~lg~~~~~~~~~~~~-~ 233 (474)
T 4abn_A 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV---------------------LDGRSWYILGNAYLSLYFNTGQ-N 233 (474)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHHHHHTTC-C
T ss_pred HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHHHHHhhcc-c
Confidence 99999999 899999999999988866 589999999999975 10 1
Q ss_pred CCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHH
Q 020091 209 DFNLQEAARWYLRAAEG-----GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMM 281 (331)
Q Consensus 209 ~~d~~~A~~~~~~A~~~-----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~ 281 (331)
.+++++|+.+|++|++. +++.+++++|.+|.. .+++++|+.+|+++++. ++..++..++.++...|+++
T Consensus 234 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~ 309 (474)
T 4abn_A 234 PKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY----EESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLT 309 (474)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 17899999999999874 679999999999976 45999999999999876 57889999999999999999
Q ss_pred HHHHHHHHH
Q 020091 282 KAVVYLELA 290 (331)
Q Consensus 282 ~A~~~~~~A 290 (331)
+|+..+.+.
T Consensus 310 eAi~~~~~~ 318 (474)
T 4abn_A 310 SLLESKGKT 318 (474)
T ss_dssp HHHHHTTTC
T ss_pred HHHHHhccc
Confidence 999877654
No 58
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.71 E-value=3.7e-16 Score=143.40 Aligned_cols=193 Identities=12% Similarity=0.070 Sum_probs=113.0
Q ss_pred HHHhccCCchHHHhHHHHHHHHHHhCCCC----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----C-----CH
Q 020091 71 KIAASFTLPQLRAASLVCKSWNDALRPLR----EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G-----ST 137 (331)
Q Consensus 71 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~-----~~ 137 (331)
.+...+..|++++|...+.+.++.....+ .+.+++.+|.+|.. .+++++|+.+|++|++. + .+
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYY----MKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 44556677888888877777766543333 35688888988888 88999999999988764 2 24
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 020091 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAAR 217 (331)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~ 217 (331)
.++.++|.+|...|++++|+.+|+++++..+... + ....+.++++||.+|.. .+++++|+.
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~------------~~~~~~~~~~lg~~y~~----~g~~~~A~~ 245 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK---Q------------PQLMGRTLYNIGLCKNS----QSQYEDAIP 245 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---C------------HHHHHHHHHHHHHHHHH----TTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC---C------------hHHHHHHHHHHHHHHHH----CCCHHHHHH
Confidence 5778889999888899999888888886522111 0 00012344455555544 445555555
Q ss_pred HHHHHHH--------CCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc----CCHH---HHHHHHHHHhccCC---
Q 020091 218 WYLRAAE--------GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GHGK---AQLEHGLGLFTEGE--- 279 (331)
Q Consensus 218 ~~~~A~~--------~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~---a~~~Lg~~~~~~~~--- 279 (331)
+|++|++ .+...+++++|.+|.. .+++++|..+|+++... +++. ....||.++...|+
T Consensus 246 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 321 (383)
T 3ulq_A 246 YFKRAIAVFEESNILPSLPQAYFLITQIHYK----LGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEA 321 (383)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHH
T ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH
Confidence 5555544 1223445555555543 22555555555555432 1211 12335555555554
Q ss_pred HHHHHHHHHHH
Q 020091 280 MMKAVVYLELA 290 (331)
Q Consensus 280 ~~~A~~~~~~A 290 (331)
+++|+.+++++
T Consensus 322 ~~~al~~~~~~ 332 (383)
T 3ulq_A 322 IQGFFDFLESK 332 (383)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
Confidence 44444444444
No 59
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.71 E-value=7.7e-15 Score=123.09 Aligned_cols=195 Identities=12% Similarity=0.020 Sum_probs=167.2
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHH
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLM 146 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~ 146 (331)
...+...+..|++++|...+...++..+ .++.+++.+|.+|.. .+++++|+.+|++++... ++.++..+|.+
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 12 TQLAMEYMRGQDYRQATASIEDALKSDP--KNELAWLVRAEIYQY----LKVNDKAQESFRQALSIKPDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 4445556778999999999988888765 468999999999999 899999999999998764 88999999999
Q ss_pred HhcC-CCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 147 YWEM-DKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 147 ~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
+... |++++|+.+|++++..+.. .+++.+++++|.+|.. .+++++|+.+|+++++.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~-------------------~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~ 142 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTY-------------------PTPYIANLNKGICSAK----QGQFGLAEAYLKRSLAA 142 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTC-------------------SCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCC-------------------cchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 9999 9999999999999982110 1457889999999987 78999999999999875
Q ss_pred --CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCH
Q 020091 226 --GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC---GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET 296 (331)
Q Consensus 226 --~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~ 296 (331)
++..++..+|.+|.. .+++++|..+|+++... .+..++..++.++...|+.++|..+++.+.+..+.
T Consensus 143 ~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 214 (225)
T 2vq2_A 143 QPQFPPAFKELARTKML----AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY 214 (225)
T ss_dssp STTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC
Confidence 678999999999976 55999999999999875 56778888888899999999999999999876543
No 60
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.70 E-value=1.7e-15 Score=128.57 Aligned_cols=168 Identities=14% Similarity=0.098 Sum_probs=142.6
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHH
Q 020091 134 RGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQ 213 (331)
Q Consensus 134 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~ 213 (331)
..++.+++++|.++...|++++|+.+|+++++..++ .+..+++++|.+|.. .++++
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~--------------------~~~~~~~~~~~~~~~----~~~~~ 59 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN--------------------QDSVTAYNCGVCADN----IKKYK 59 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--------------------CCHHHHHHHHHHHHH----TTCHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC--------------------CCcHHHHHHHHHHHH----hhcHH
Confidence 347899999999999999999999999999998752 377899999999987 88999
Q ss_pred HHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC--CH-------HHHHHHHHHHhccCCHHH
Q 020091 214 EAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HG-------KAQLEHGLGLFTEGEMMK 282 (331)
Q Consensus 214 ~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~-------~a~~~Lg~~~~~~~~~~~ 282 (331)
+|+.+|+++++. ++..+++.+|.+|.. .+++++|+.+|++++... ++ .+++.+|.++...|++++
T Consensus 60 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 135 (228)
T 4i17_A 60 EAADYFDIAIKKNYNLANAYIGKSAAYRD----MKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEK 135 (228)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHH
Confidence 999999999986 568899999999976 459999999999999874 44 568999999999999999
Q ss_pred HHHHHHHHHHcCCH----HHHHHHHHHHhhhchhcH---------------------------HHHHHHHHhhhcCCCCC
Q 020091 283 AVVYLELATRAGET----AADHVKNVILQQLSATSR---------------------------DRAMLVVDSWRAMPSLH 331 (331)
Q Consensus 283 A~~~~~~A~~~~~~----~a~~~l~~~~~~l~~~~~---------------------------~~a~~~~~~~~~~~~~~ 331 (331)
|+.+|+++++.++. .+..+++.++. ..++. ++|...+++.++..|.+
T Consensus 136 A~~~~~~al~~~p~~~~~~~~~~l~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~ 213 (228)
T 4i17_A 136 AEENYKHATDVTSKKWKTDALYSLGVLFY--NNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNR 213 (228)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHH--HHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhcCCCcccHHHHHHHHHHHH--HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 99999999998877 44555555543 34444 78899999988888764
No 61
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.69 E-value=3.2e-15 Score=132.45 Aligned_cols=191 Identities=16% Similarity=0.122 Sum_probs=149.8
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHH
Q 020091 108 GKRFKHGRGVRKNLDKALDSFLKGAAR----GS----TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEA 179 (331)
Q Consensus 108 G~~y~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A 179 (331)
|.+|.. .+++++|+.+|++|++. |+ +.++.++|.+|...|++++|+.+|++|+.+.+
T Consensus 44 ~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~----------- 108 (292)
T 1qqe_A 44 ATIYRL----RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFT----------- 108 (292)
T ss_dssp HHHHHH----TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHH----cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-----------
Confidence 677877 89999999999999875 43 56889999999999999999999999987632
Q ss_pred HHHHHHHHHCCC----HHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHhcCCCccc
Q 020091 180 VKLLYQASIAGH----VRAQYQLALCLHRGRGVD-FNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLPL 246 (331)
Q Consensus 180 ~~~~~~a~~~~~----~~a~~~lg~~y~~G~g~~-~d~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~g~g~~~ 246 (331)
+.|+ +.++.++|.+|.. . +++++|+.+|++|++. ++ ..++.++|.+|.. .+
T Consensus 109 --------~~g~~~~~a~~~~~lg~~~~~----~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g 172 (292)
T 1qqe_A 109 --------HRGQFRRGANFKFELGEILEN----DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL----DG 172 (292)
T ss_dssp --------HTTCHHHHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TT
T ss_pred --------HcCCHHHHHHHHHHHHHHHHH----hhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----hC
Confidence 1233 4578899999986 5 8899999999999874 22 4568899999976 45
Q ss_pred cHHHHHHHHHHHHHcC--CH-------HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHH-------HHHHHHHHhhhc
Q 020091 247 SHRQARKWMKRAADCG--HG-------KAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA-------DHVKNVILQQLS 310 (331)
Q Consensus 247 ~~~~A~~~~~~a~~~~--~~-------~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a-------~~~l~~~~~~l~ 310 (331)
++++|+.+|++++... +. .+++++|.++...|++++|+.+|+++++..+... ...+...+....
T Consensus 173 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~ 252 (292)
T 1qqe_A 173 QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGD 252 (292)
T ss_dssp CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCC
Confidence 9999999999999863 22 2678999999999999999999999987654322 223344444456
Q ss_pred hhcHHHHHHHHHhhhcCCC
Q 020091 311 ATSRDRAMLVVDSWRAMPS 329 (331)
Q Consensus 311 ~~~~~~a~~~~~~~~~~~~ 329 (331)
.++.+++...++++....|
T Consensus 253 ~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 253 SEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp TTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHhccCCccHH
Confidence 6778899999888876655
No 62
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.69 E-value=7.7e-16 Score=129.53 Aligned_cols=166 Identities=14% Similarity=0.008 Sum_probs=139.4
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHH----------------HHHHHhcCCCHHHHHHHHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVD----------------AGLMYWEMDKKEAAISLYR 161 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~----------------lg~~~~~~~~~~~A~~~~~ 161 (331)
.+..++..|..+.. .+++++|+.+|++++... ++.+++. +|.+|...|++++|+.+|+
T Consensus 3 ~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 78 (208)
T 3urz_A 3 SVDEMLQKVSAAIE----AGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK 78 (208)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 46778888999988 899999999999999875 7788888 9999999999999999999
Q ss_pred HHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHh
Q 020091 162 QAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYS 239 (331)
Q Consensus 162 ~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~ 239 (331)
++++.+| +++.+++++|.+|.. .+++++|+.+|+++++. +++.+++++|.+|.
T Consensus 79 ~al~~~p---------------------~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 79 ELLQKAP---------------------NNVDCLEACAEMQVC----RGQEKDALRMYEKILQLEADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHCT---------------------TCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHCC---------------------CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999877 589999999999987 78999999999999875 78999999999985
Q ss_pred cCCCccccHHHHHHHHHHHHHcCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCH
Q 020091 240 FGEGLPLSHRQARKWMKRAADCGH-GKAQLEHGLGLFTEGEMMKAVVYLELATRAGET 296 (331)
Q Consensus 240 ~g~g~~~~~~~A~~~~~~a~~~~~-~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~ 296 (331)
.. | ......+...|+++....+ ..+++.+|.++...|++++|+.+|++|++..+.
T Consensus 134 ~~-~-~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 134 LT-A-EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HH-H-HHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HH-h-HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 31 1 2355677778887765433 246788999999999999999999999998764
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.68 E-value=2.5e-15 Score=137.87 Aligned_cols=165 Identities=16% Similarity=0.099 Sum_probs=136.6
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----C----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCcc
Q 020091 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G----STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPA 174 (331)
Q Consensus 103 a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 174 (331)
.++.+|.++.. .+++++|+.+|++|... + .+.+++++|.+|...|++++|+.+|.+|++......
T Consensus 105 ~~~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~--- 177 (383)
T 3ulq_A 105 FNFFRGMYELD----QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE--- 177 (383)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS---
T ss_pred HHHHHHHHHHH----hcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc---
Confidence 34559999999 89999999999999875 3 456889999999999999999999999987632110
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHhcCCCccc
Q 020091 175 NAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLPL 246 (331)
Q Consensus 175 ~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~g~g~~~ 246 (331)
++ ..+.+.+++++|.+|.. .+++++|+.+|++|++. ++ ..+++++|.+|.. .+
T Consensus 178 ~~-----------~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~g 238 (383)
T 3ulq_A 178 AY-----------NIRLLQCHSLFATNFLD----LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS----QS 238 (383)
T ss_dssp TT-----------HHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TT
T ss_pred cc-----------hHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH----CC
Confidence 00 01235688999999987 88999999999999853 43 4688999999976 55
Q ss_pred cHHHHHHHHHHHHHc--------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 247 SHRQARKWMKRAADC--------GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 247 ~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
++++|+.+|+++++. ....++++||.+|...|++++|+.+|++|++.
T Consensus 239 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 293 (383)
T 3ulq_A 239 QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY 293 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999882 23577899999999999999999999999875
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.67 E-value=2.7e-14 Score=127.26 Aligned_cols=217 Identities=10% Similarity=-0.036 Sum_probs=147.8
Q ss_pred HHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC---CCCCCH-------HHHHHHHHHHHh-C--CCHHHHHHHHHHHh
Q 020091 82 RAASLVCKSWNDALRPLREAMVLLRWGKRFKHGR---GVRKNL-------DKALDSFLKGAA-R--GSTLAMVDAGLMYW 148 (331)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~---g~~~~~-------~~A~~~~~~A~~-~--~~~~a~~~lg~~~~ 148 (331)
..|..++.+.++..+ .++.+++.+|.++..-. ...+++ ++|+..|++|+. . +++.++..+|.++.
T Consensus 33 ~~a~~~~~~al~~~p--~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG--HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 567777788887765 48999999999886300 003564 899999999998 4 48889999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHH-HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC-
Q 020091 149 EMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVR-AQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG- 226 (331)
Q Consensus 149 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~- 226 (331)
..|++++|+..|++++...+. ++. ++.++|.++.. .+++++|+..|++|++.+
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~---------------------~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~p 165 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDI---------------------DPTLVYIQYMKFARR----AEGIKSGRMIFKKAREDAR 165 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSS---------------------CTHHHHHHHHHHHHH----HHCHHHHHHHHHHHHTSTT
T ss_pred hcCCHHHHHHHHHHHHhcccc---------------------CccHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCC
Confidence 999999999999999998663 443 67777777665 566777777777777653
Q ss_pred -CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc---C---CHH
Q 020091 227 -YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA---G---ETA 297 (331)
Q Consensus 227 -~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~---~---~~~ 297 (331)
....+...+.+..... +++++|+..|++++.. .++..+..+|.++...|++++|...|++++.. . ...
T Consensus 166 ~~~~~~~~~a~~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~ 242 (308)
T 2ond_A 166 TRHHVYVTAALMEYYCS---KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 242 (308)
T ss_dssp CCTHHHHHHHHHHHHTS---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHH
T ss_pred CCHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 3344444444322212 3777777777777654 45667777777777777777777777777774 2 122
Q ss_pred HHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 298 ADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 298 a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
....+..+. ...++.+++..++++..+..|.
T Consensus 243 l~~~~~~~~--~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 243 IWARFLAFE--SNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHHHHHH--HHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHH--HHcCCHHHHHHHHHHHHHHccc
Confidence 333333332 3345666777777776666554
No 65
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.67 E-value=2.9e-15 Score=137.27 Aligned_cols=213 Identities=9% Similarity=0.022 Sum_probs=139.4
Q ss_pred HHHhccCCchHHHhHHHHHHHHHHhCCCC----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----C-----CH
Q 020091 71 KIAASFTLPQLRAASLVCKSWNDALRPLR----EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G-----ST 137 (331)
Q Consensus 71 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~-----~~ 137 (331)
.+...+..|++.+|...+.+.++.....+ .+.+++.+|.+|.. .+++++|+.+|++|++. + .+
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYH----MKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 33445677889999887777766554433 36688899999988 89999999999998864 2 24
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------------CccCHHHHHHHHHHHHH-----C--CCHH
Q 020091 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-----------------QPANAEEAVKLLYQASI-----A--GHVR 193 (331)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------------~~~~~~~A~~~~~~a~~-----~--~~~~ 193 (331)
.++.++|.+|...|++++|+.+|+++++...... ..+++++|+.+|+++++ . ..+.
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 5778899999999999999999999887522111 45667777777777665 2 2356
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CC---HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc-CCHH
Q 020091 194 AQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GY---VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-GHGK 265 (331)
Q Consensus 194 a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~~---~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~ 265 (331)
+++++|.+|.. .+++++|+.+|+++++. ++ ......++.+|.. .+-...+.+|+.++++.... ....
T Consensus 263 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~-~~~~~~~~~al~~~~~~~~~~~~~~ 337 (378)
T 3q15_A 263 VLFGLSWTLCK----AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKE-TVDERKIHDLLSYFEKKNLHAYIEA 337 (378)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSS-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhCCChhHHHH
Confidence 66677777765 56677777777777653 11 2334455555532 22112366666666652111 1234
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 020091 266 AQLEHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 266 a~~~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
....||.+|...|++++|..+|+++++
T Consensus 338 ~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 338 CARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455677777777777777777777665
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.66 E-value=2.4e-15 Score=138.55 Aligned_cols=213 Identities=15% Similarity=0.085 Sum_probs=172.2
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC--
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--ST----LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-- 171 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~----~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-- 171 (331)
.+..++.+|..+.. .+++++|+.+|+++++.+ ++ .+++.+|.+|...|++++|+.+|++++.......
T Consensus 47 ~~~~l~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 122 (411)
T 4a1s_A 47 MCLELALEGERLCN----AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR 122 (411)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCc
Confidence 35667789999999 899999999999999874 44 5789999999999999999999999987621111
Q ss_pred ---------------CccCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHhcCCCCCCC-----------------
Q 020091 172 ---------------QPANAEEAVKLLYQASIA--------GHVRAQYQLALCLHRGRGVDFN----------------- 211 (331)
Q Consensus 172 ---------------~~~~~~~A~~~~~~a~~~--------~~~~a~~~lg~~y~~G~g~~~d----------------- 211 (331)
..+++++|+.+|+++++. ....++.++|.+|.. .++
T Consensus 123 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~~~~~~~~~~a~~~ 198 (411)
T 4a1s_A 123 LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA----KGKHLGQRNPGKFGDDVKEA 198 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HHHHHHHHSTTCCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH----cCcccccccchhhhhhhhHH
Confidence 689999999999998754 235688999999987 788
Q ss_pred HHHHHHHHHHHHHC----C----CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc----CC----HHHHHHHHHHHh
Q 020091 212 LQEAARWYLRAAEG----G----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH----GKAQLEHGLGLF 275 (331)
Q Consensus 212 ~~~A~~~~~~A~~~----~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~ 275 (331)
+++|+.+|+++++. + ...++.++|.+|.. .+++++|+.+|++++.. ++ ..++..+|.+|.
T Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 274 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYL----LGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHI 274 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 99999999999763 2 34588899999976 45999999999999875 23 237889999999
Q ss_pred ccCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHhhhchhcHHHHHHHHHhhhc
Q 020091 276 TEGEMMKAVVYLELATRAGE--------TAADHVKNVILQQLSATSRDRAMLVVDSWRA 326 (331)
Q Consensus 276 ~~~~~~~A~~~~~~A~~~~~--------~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~ 326 (331)
..|++++|+.+|+++++... ..+..+++.++ ...++.++|...+++.++
T Consensus 275 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 275 FLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTY--TLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHH
Confidence 99999999999999987532 33444555444 566788899888887654
No 67
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.66 E-value=6.5e-15 Score=127.79 Aligned_cols=173 Identities=13% Similarity=0.045 Sum_probs=143.5
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--C---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC
Q 020091 97 PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S---TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA 171 (331)
Q Consensus 97 ~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~ 171 (331)
+..++.+++.+|..+.. .+++++|+.+|++++... + +.+++.+|.+|...|++++|+.+|++++...+...
T Consensus 11 ~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~ 86 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYN----QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP 86 (261)
T ss_dssp CCSSHHHHHHHHHHHHH----TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred CCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc
Confidence 34689999999999999 899999999999999873 5 88999999999999999999999999999865321
Q ss_pred CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-CC---CCCCCHHHHHHHHHHHHHC--CCHHHH--------------
Q 020091 172 QPANAEEAVKLLYQASIAGHVRAQYQLALCLHR-GR---GVDFNLQEAARWYLRAAEG--GYVRAM-------------- 231 (331)
Q Consensus 172 ~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~-G~---g~~~d~~~A~~~~~~A~~~--~~~~a~-------------- 231 (331)
..+.+++.+|.+|.. +. ...+++++|+.+|+++++. ++..+.
T Consensus 87 ------------------~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~ 148 (261)
T 3qky_A 87 ------------------RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLA 148 (261)
T ss_dssp ------------------THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHH
T ss_pred ------------------hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHH
Confidence 247889999999864 10 0157899999999999875 333333
Q ss_pred ---HHHHHHHhcCCCccccHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhcc----------CCHHHHHHHHHHHHHc
Q 020091 232 ---YNTSLCYSFGEGLPLSHRQARKWMKRAADCG-----HGKAQLEHGLGLFTE----------GEMMKAVVYLELATRA 293 (331)
Q Consensus 232 ---~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~~~~~----------~~~~~A~~~~~~A~~~ 293 (331)
+.+|.+|.. .+++++|+.+|++++... .+.+++.+|.+|... |++++|+.+|+++++.
T Consensus 149 ~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 149 RKQYEAARLYER----RELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----ccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 889999976 559999999999998762 357889999999876 8999999999999987
Q ss_pred CC
Q 020091 294 GE 295 (331)
Q Consensus 294 ~~ 295 (331)
.+
T Consensus 225 ~p 226 (261)
T 3qky_A 225 FP 226 (261)
T ss_dssp CT
T ss_pred CC
Confidence 54
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=6.8e-15 Score=129.66 Aligned_cols=203 Identities=13% Similarity=0.060 Sum_probs=148.0
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-------C---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-------G---STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-------~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
.+.+++.+|.+|.. .+++++|+.+|+++++. . .+.++..+|.+|...|++++|+.+|++++...
T Consensus 26 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 99 (311)
T 3nf1_A 26 RLRTLHNLVIQYAS----QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR-- 99 (311)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--
Confidence 46788999999999 89999999999999874 2 45678999999999999999999999988652
Q ss_pred CCCccCHHHHHHHHHHHHH---CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHH
Q 020091 170 AAQPANAEEAVKLLYQASI---AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----------GYVRAMYNTSL 236 (331)
Q Consensus 170 ~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----------~~~~a~~~lg~ 236 (331)
++... .....+++++|.+|.. .+++++|+.+|+++++. ....++.++|.
T Consensus 100 --------------~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 161 (311)
T 3nf1_A 100 --------------EKTLGKDHPAVAATLNNLAVLYGK----RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLAL 161 (311)
T ss_dssp --------------HHHHCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred --------------HHHhCCCChHHHHHHHHHHHHHHH----cCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 11100 1235677788888876 67888888888888653 13456778888
Q ss_pred HHhcCCCccccHHHHHHHHHHHHHc------C-C---HHHHHHHHHHHhccCCHHHHHHHHHHHHHc-------------
Q 020091 237 CYSFGEGLPLSHRQARKWMKRAADC------G-H---GKAQLEHGLGLFTEGEMMKAVVYLELATRA------------- 293 (331)
Q Consensus 237 ~y~~g~g~~~~~~~A~~~~~~a~~~------~-~---~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~------------- 293 (331)
+|.. .+++++|+.+|+++... + + ..++..+|.+|...|++++|+.+|+++++.
T Consensus 162 ~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 162 LCQN----QGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHT----TTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHH----cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 8865 44888888888888764 1 2 345677888888888888888888888763
Q ss_pred ------------------------------------CCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 294 ------------------------------------GETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 294 ------------------------------------~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
.+..+.............++.++|...+++.++..|.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 2333333344444445667788888888887765553
No 69
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.65 E-value=4e-14 Score=125.49 Aligned_cols=187 Identities=14% Similarity=0.047 Sum_probs=132.0
Q ss_pred CCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHH
Q 020091 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAA 156 (331)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A 156 (331)
..++.++|+..+..++....+..++.+++.+|.+|.. .|++++|+.+|++ .++++++..+|.+|...|+.++|
T Consensus 77 ~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~----~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~~g~~~~A 149 (291)
T 3mkr_A 77 SHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFY----DQNPDAALRTLHQ---GDSLECMAMTVQILLKLDRLDLA 149 (291)
T ss_dssp CSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHH----TTCHHHHHHHHTT---CCSHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHH----CCCHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHH
Confidence 4455666665555554433233466666666666666 6666666666666 45666666666666666666666
Q ss_pred HHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHH--HHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHH
Q 020091 157 ISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLA--LCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMY 232 (331)
Q Consensus 157 ~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg--~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~ 232 (331)
+..|++++...+ ++.......+ .++.. .+++++|+.+|+++++. +++.+++
T Consensus 150 ~~~l~~~~~~~p---------------------~~~~~~l~~a~~~l~~~----~~~~~eA~~~~~~~l~~~p~~~~~~~ 204 (291)
T 3mkr_A 150 RKELKKMQDQDE---------------------DATLTQLATAWVSLAAG----GEKLQDAYYIFQEMADKCSPTLLLLN 204 (291)
T ss_dssp HHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHHC----TTHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHhhCc---------------------CcHHHHHHHHHHHHHhC----chHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 666666666543 2332222222 22222 47899999999999875 7889999
Q ss_pred HHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHH-HHHHHHHHHHcCCHHHH
Q 020091 233 NTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMK-AVVYLELATRAGETAAD 299 (331)
Q Consensus 233 ~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~-A~~~~~~A~~~~~~~a~ 299 (331)
++|.+|.. .+++++|...|++++.. +++++++++|.++...|+.++ +..+++++.+.++..+.
T Consensus 205 ~la~~~~~----~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~ 270 (291)
T 3mkr_A 205 GQAACHMA----QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF 270 (291)
T ss_dssp HHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH
Confidence 99999976 45999999999999887 678999999999999999876 56899999988765543
No 70
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.65 E-value=1.3e-14 Score=117.69 Aligned_cols=161 Identities=12% Similarity=0.049 Sum_probs=144.6
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
.+.+++.+|.++.. .+++++|+.+|+++... .++.+++.+|.++...|++++|+.+|++++...+
T Consensus 7 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------- 73 (186)
T 3as5_A 7 RQVYYRDKGISHAK----AGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP--------- 73 (186)
T ss_dssp HHHHHHHHHHHHHH----HTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------
T ss_pred hhHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---------
Confidence 35678889999999 89999999999999876 4899999999999999999999999999998865
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHH
Q 020091 178 EAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWM 255 (331)
Q Consensus 178 ~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 255 (331)
.++.+++.+|.+|.. .+++++|+.+|++++.. ++..++..+|.+|.. .+++++|..+|
T Consensus 74 ------------~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~ 133 (186)
T 3as5_A 74 ------------DNVKVATVLGLTYVQ----VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN----LGRFDEAIDSF 133 (186)
T ss_dssp ------------TCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHH
T ss_pred ------------CCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH----cCcHHHHHHHH
Confidence 478899999999987 78999999999999875 678899999999976 45999999999
Q ss_pred HHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 256 KRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 256 ~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
+++... .+..++..+|.++...|++++|+.+|+++++.
T Consensus 134 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999877 46788999999999999999999999999875
No 71
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.65 E-value=9.3e-15 Score=126.72 Aligned_cols=204 Identities=12% Similarity=-0.015 Sum_probs=165.4
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGL 145 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~ 145 (331)
....+...+..|++++|...+.+.++..++ ++.+++.+|.+|.. .+++++|+.+|++++... ++.+++.+|.
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 119 (275)
T 1xnf_A 46 LYERGVLYDSLGLRALARNDFSQALAIRPD--MPEVFNYLGIYLTQ----AGNFDAAYEAFDSVLELDPTYNYAHLNRGI 119 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCccccHHHHHHHH
Confidence 344555667889999999999988887654 79999999999999 899999999999999864 8899999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCC----------CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHH
Q 020091 146 MYWEMDKKEAAISLYRQAAVLGDPAA----------QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQ 213 (331)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~~~~~~----------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~ 213 (331)
+|...|++++|+.+|++++...+... ..+++++|+.+|.+++.. .+... +.++.++.. .++.+
T Consensus 120 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~ 194 (275)
T 1xnf_A 120 ALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWG-WNIVEFYLG----NISEQ 194 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTH-HHHHHHHTT----SSCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHH-HHHHHHHHH----hcCHH
Confidence 99999999999999999999877654 458899999999998764 33333 345566554 56789
Q ss_pred HHHHHHHHHHHCCC------HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCHHHHHHHH
Q 020091 214 EAARWYLRAAEGGY------VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYL 287 (331)
Q Consensus 214 ~A~~~~~~A~~~~~------~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~ 287 (331)
+|+..++++++... ..+++.+|.+|.. .+++++|+.+|++++..... .....+.++...|++++|+..|
T Consensus 195 ~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 195 TLMERLKADATDNTSLAEHLSETNFYLGKYYLS----LGDLDSATALFKLAVANNVH-NFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCCT-TCHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHhcccccccccccHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCch-hHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999977643 6889999999976 45999999999999987532 2344577888899999999887
No 72
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.65 E-value=1.7e-15 Score=149.70 Aligned_cols=191 Identities=13% Similarity=0.017 Sum_probs=152.0
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH--------hC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 020091 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGA--------AR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLG 167 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~--------~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~ 167 (331)
..++.+.+..| .. .+++++|++.|++++ .. +++.+++.+|.++...|++++|+..|+++++.+
T Consensus 391 p~~~~a~~~~a---~~----~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 463 (681)
T 2pzi_A 391 PTDVAASVLQA---TV----LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV 463 (681)
T ss_dssp TTSTTHHHHHH---TT----TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCCcchHHhhc---cc----ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Confidence 45666777666 33 689999999999998 44 478899999999999999999999999998876
Q ss_pred CCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCcc
Q 020091 168 DPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLP 245 (331)
Q Consensus 168 ~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~ 245 (331)
+ +++.+++++|.+|.. .+++++|+..|++|++. ++..+++++|.+|.. .
T Consensus 464 p---------------------~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~----~ 514 (681)
T 2pzi_A 464 G---------------------WRWRLVWYRAVAELL----TGDYDSATKHFTEVLDTFPGELAPKLALAATAEL----A 514 (681)
T ss_dssp C---------------------CCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH----H
T ss_pred c---------------------chHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----c
Confidence 5 689999999999987 78899999999999765 788999999999976 4
Q ss_pred ccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhhhc------hhcHH
Q 020091 246 LSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAADHVKNVILQQLS------ATSRD 315 (331)
Q Consensus 246 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~--~~a~~~l~~~~~~l~------~~~~~ 315 (331)
+++++ +.+|+++++. .+..++++||.++...|++++|+.+|++|++.++ ..+..+++.++.... ..+.+
T Consensus 515 g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 593 (681)
T 2pzi_A 515 GNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIR 593 (681)
T ss_dssp TCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHH
T ss_pred CChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHH
Confidence 58888 9999999876 5788999999999999999999999999988765 455556666653322 35566
Q ss_pred HHHHHHHhhh
Q 020091 316 RAMLVVDSWR 325 (331)
Q Consensus 316 ~a~~~~~~~~ 325 (331)
+|...+.++.
T Consensus 594 ~A~~~l~~~~ 603 (681)
T 2pzi_A 594 DAARRVEALP 603 (681)
T ss_dssp HHHHHHHTSC
T ss_pred HHHHHHhhCC
Confidence 6666555543
No 73
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.65 E-value=4.8e-15 Score=135.62 Aligned_cols=214 Identities=17% Similarity=0.093 Sum_probs=172.8
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--C----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S----TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA- 171 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~- 171 (331)
....+++.+|.++.. .+++++|+.+|++++..+ + ..+++.+|.++...|++++|+.+|++++.......
T Consensus 7 ~~~~~l~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 82 (406)
T 3sf4_A 7 ASCLELALEGERLCK----SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD 82 (406)
T ss_dssp CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHH----hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc
Confidence 356788999999999 899999999999999864 4 46788999999999999999999999987622111
Q ss_pred ----------------CccCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHhcCCCCCCC----------------
Q 020091 172 ----------------QPANAEEAVKLLYQASIA----GH----VRAQYQLALCLHRGRGVDFN---------------- 211 (331)
Q Consensus 172 ----------------~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~y~~G~g~~~d---------------- 211 (331)
..+++++|+.+|+++++. ++ +.++.++|.+|.. .++
T Consensus 83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~~~~~~~~~~~~~ 158 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA----KGKSFGCPGPQDVGEFPEE 158 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HHHTCC-------CCCCHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH----cCCcccccccchhhhhhhh
Confidence 678999999999998764 33 5589999999987 778
Q ss_pred ----HHHHHHHHHHHHHC----CC----HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc----CC----HHHHHHHH
Q 020091 212 ----LQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH----GKAQLEHG 271 (331)
Q Consensus 212 ----~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg 271 (331)
+++|+.+|.++++. ++ ..++.++|.+|.. .+++++|+.+|+++... ++ ..++.++|
T Consensus 159 a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 234 (406)
T 3sf4_A 159 VRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLG 234 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 99999999999753 22 4578899999976 55999999999999865 32 23788999
Q ss_pred HHHhccCCHHHHHHHHHHHHHcC----C----HHHHHHHHHHHhhhchhcHHHHHHHHHhhhc
Q 020091 272 LGLFTEGEMMKAVVYLELATRAG----E----TAADHVKNVILQQLSATSRDRAMLVVDSWRA 326 (331)
Q Consensus 272 ~~~~~~~~~~~A~~~~~~A~~~~----~----~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~ 326 (331)
.+|...|++++|+.+|+++++.. + ..+..+++.+ ....++.++|...+++..+
T Consensus 235 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 235 NAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT--YTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHH--HHHhCcHHHHHHHHHHHHH
Confidence 99999999999999999998652 2 2344444444 4566788899888887654
No 74
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.64 E-value=9.8e-16 Score=122.17 Aligned_cols=141 Identities=16% Similarity=0.136 Sum_probs=104.6
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHH
Q 020091 106 RWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLL 183 (331)
Q Consensus 106 ~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~ 183 (331)
.||.++.. .+++++|+..|++++... ++.+++.||.+|...|++++|+.+|++++++.+
T Consensus 2 ~LG~~~~~----~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p--------------- 62 (150)
T 4ga2_A 2 PLGSMRRS----KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE--------------- 62 (150)
T ss_dssp -----CCC----HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------
T ss_pred HhHHHHHH----cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------
Confidence 37888877 788888888888887764 566778888888888888888888888888766
Q ss_pred HHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHH-HHHHHHH
Q 020091 184 YQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARK-WMKRAAD 260 (331)
Q Consensus 184 ~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~-~~~~a~~ 260 (331)
+++.+++++|.+|.. .+++++|+.+|+++++. +++.+++++|.+|.. .+++++|.. |+++|++
T Consensus 63 ------~~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 63 ------RDPKAHRFLGLLYEL----EENTDKAVECYRRSVELNPTQKDLVLKIAELLCK----NDVTDGRAKYWVERAAK 128 (150)
T ss_dssp ------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HCSSSSHHHHHHHHHHH
T ss_pred ------CCHHHHHHHHHHHHH----cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Confidence 578888888888876 77888888888888764 577888888888765 335555444 4577776
Q ss_pred c--CCHHHHHHHHHHHhccCC
Q 020091 261 C--GHGKAQLEHGLGLFTEGE 279 (331)
Q Consensus 261 ~--~~~~a~~~Lg~~~~~~~~ 279 (331)
. +++.++...+.++..+|+
T Consensus 129 l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 129 LFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HSTTCHHHHHHHHHHHHTCCC
T ss_pred hCcCCHHHHHHHHHHHHHhCc
Confidence 5 567777777777766664
No 75
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.63 E-value=6.8e-15 Score=127.56 Aligned_cols=166 Identities=16% Similarity=0.122 Sum_probs=121.0
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC------C----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR------G----STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~------~----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
.+.+++.+|.+|.. .+++++|+.+|+++++. + .+.++.++|.+|...|++++|+.+|++++...
T Consensus 42 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-- 115 (283)
T 3edt_B 42 VATMLNILALVYRD----QNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR-- 115 (283)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH--
Confidence 57889999999999 89999999999999865 2 45678999999999999999999999988761
Q ss_pred CCCccCHHHHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--------C--CHHHHHHHHH
Q 020091 170 AAQPANAEEAVKLLYQASIA---GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--------G--YVRAMYNTSL 236 (331)
Q Consensus 170 ~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--------~--~~~a~~~lg~ 236 (331)
++.... ....+++++|.+|.. .+++++|+.+|+++++. . ...++.++|.
T Consensus 116 --------------~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 177 (283)
T 3edt_B 116 --------------EKVLGKFHPDVAKQLNNLALLCQN----QGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLAS 177 (283)
T ss_dssp --------------HHHHCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred --------------HHHcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 111111 235566777777765 66777777777777654 1 2445667777
Q ss_pred HHhcCCCccccHHHHHHHHHHHHHc------------------------------------------------C---CHH
Q 020091 237 CYSFGEGLPLSHRQARKWMKRAADC------------------------------------------------G---HGK 265 (331)
Q Consensus 237 ~y~~g~g~~~~~~~A~~~~~~a~~~------------------------------------------------~---~~~ 265 (331)
+|.. .+++++|+.+|+++... . ...
T Consensus 178 ~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (283)
T 3edt_B 178 CYLK----QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNT 253 (283)
T ss_dssp HHHH----HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHH
T ss_pred HHHH----cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 7755 44777777777777653 1 124
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 266 AQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 266 a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
++..||.+|...|++++|+.+|+++++.
T Consensus 254 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 254 TLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5667777777778888888877777653
No 76
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.63 E-value=2e-14 Score=124.74 Aligned_cols=174 Identities=17% Similarity=0.077 Sum_probs=145.7
Q ss_pred hCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCC---HHHHHHHHHHHhcCCCCC
Q 020091 133 ARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGH---VRAQYQLALCLHRGRGVD 209 (331)
Q Consensus 133 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~G~g~~ 209 (331)
...++.+++.+|..+...|++++|+.+|++++...+ ++ +.+++.+|.+|.. .
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p---------------------~~~~~~~a~~~lg~~~~~----~ 65 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR---------------------THEWAADAQFYLARAYYQ----N 65 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS---------------------CSTTHHHHHHHHHHHHHH----T
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC---------------------CCcchHHHHHHHHHHHHH----h
Confidence 346889999999999999999999999999998876 35 8899999999987 8
Q ss_pred CCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHhcCC----CccccHHHHHHHHHHHHHcC--CHHHH-----------
Q 020091 210 FNLQEAARWYLRAAEG-----GYVRAMYNTSLCYSFGE----GLPLSHRQARKWMKRAADCG--HGKAQ----------- 267 (331)
Q Consensus 210 ~d~~~A~~~~~~A~~~-----~~~~a~~~lg~~y~~g~----g~~~~~~~A~~~~~~a~~~~--~~~a~----------- 267 (331)
+++++|+.+|+++++. ....+++.+|.+|.... -..+++++|+.+|++++... +..+.
T Consensus 66 ~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~ 145 (261)
T 3qky_A 66 KEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRA 145 (261)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHH
Confidence 9999999999999985 23678999999996410 00349999999999999863 33333
Q ss_pred ------HHHHHHHhccCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHhhh--------chhcHHHHHHHHHhhhcCC
Q 020091 268 ------LEHGLGLFTEGEMMKAVVYLELATRAGE-----TAADHVKNVILQQL--------SATSRDRAMLVVDSWRAMP 328 (331)
Q Consensus 268 ------~~Lg~~~~~~~~~~~A~~~~~~A~~~~~-----~~a~~~l~~~~~~l--------~~~~~~~a~~~~~~~~~~~ 328 (331)
+.+|.+|...|++++|+..|+++++..+ ..+.++++.++..+ ..++.++|...++++++..
T Consensus 146 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 146 KLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 8899999999999999999999998643 46788888888766 4588899999999999888
Q ss_pred CCC
Q 020091 329 SLH 331 (331)
Q Consensus 329 ~~~ 331 (331)
|.+
T Consensus 226 p~~ 228 (261)
T 3qky_A 226 PDS 228 (261)
T ss_dssp TTC
T ss_pred CCC
Confidence 864
No 77
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.62 E-value=1e-14 Score=128.51 Aligned_cols=196 Identities=17% Similarity=0.136 Sum_probs=141.5
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhC------CCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC------C-
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALR------PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR------G- 135 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~------~- 135 (331)
...+...+..|++++|...+.+.++... ....+.+++.+|.+|.. .+++++|+.+|++++.. +
T Consensus 31 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 31 HNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD----QNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 4445556788999999988888777531 23357789999999999 89999999999999875 2
Q ss_pred ---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-----CCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCC
Q 020091 136 ---STLAMVDAGLMYWEMDKKEAAISLYRQAAVLG-----DPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRG 207 (331)
Q Consensus 136 ---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g 207 (331)
...++.++|.+|...|++++|+.+|+++++.. .... ....+++++|.+|..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~------------------~~~~~~~~la~~~~~--- 165 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP------------------DVAKQLNNLALLCQN--- 165 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH------------------HHHHHHHHHHHHHHT---
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh------------------HHHHHHHHHHHHHHH---
Confidence 45678999999999999999999999998762 1100 124455566666654
Q ss_pred CCCCHHHHHHHHHHHHHC------C----CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHH-----------------
Q 020091 208 VDFNLQEAARWYLRAAEG------G----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD----------------- 260 (331)
Q Consensus 208 ~~~d~~~A~~~~~~A~~~------~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~----------------- 260 (331)
.+++++|+.+|+++++. + ...++..+|.+|.. .+++++|..+|+++..
T Consensus 166 -~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 240 (311)
T 3nf1_A 166 -QGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLK----QGKFKQAETLYKEILTRAHEREFGSVDDENKPI 240 (311)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHHHC------CCH
T ss_pred -cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHH
Confidence 55666666666666543 1 13345566666644 3366666666666654
Q ss_pred --------------------------------c--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 020091 261 --------------------------------C--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 294 (331)
Q Consensus 261 --------------------------------~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~ 294 (331)
. ....++..||.+|...|++++|+.+|+++++..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 241 WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp HHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 2 234677899999999999999999999998753
No 78
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.61 E-value=5.9e-15 Score=124.08 Aligned_cols=175 Identities=14% Similarity=0.063 Sum_probs=142.4
Q ss_pred hHHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHH----------------HHHHHhcCCCCCCCHHHHHHHH
Q 020091 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLR----------------WGKRFKHGRGVRKNLDKALDSF 128 (331)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~----------------LG~~y~~g~g~~~~~~~A~~~~ 128 (331)
....+.++...+..|++++|+..+.+.++..|+ ++.+++. +|.+|.. .+++++|+.+|
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~ 77 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID--RTEMYYWTNVDKNSEISSKLATELALAYKK----NRNYDKAYLFY 77 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH--HHHHHHHHHSCTTSHHHHHHHHHHHHHHHH----TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--ChHHHHHhhhcchhhhhHHHHHHHHHHHHH----CCCHHHHHHHH
Confidence 445677888889999999999999988887654 6888899 9999999 89999999999
Q ss_pred HHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-C
Q 020091 129 LKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHR-G 205 (331)
Q Consensus 129 ~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~-G 205 (331)
+++++.. ++.+++++|.+|...|++++|+.+|+++++++| +++.+++++|.+|.. |
T Consensus 78 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P---------------------~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 78 KELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA---------------------DNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------------------CCHHHHHHHHHHHHHHh
Confidence 9999874 899999999999999999999999999999877 589999999999853 2
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC-CHHHHHHHHHH
Q 020091 206 RGVDFNLQEAARWYLRAAEGGYV-RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-HGKAQLEHGLG 273 (331)
Q Consensus 206 ~g~~~d~~~A~~~~~~A~~~~~~-~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~ 273 (331)
..+..++...|+++...... .+++.+|.++.. .+++++|+.+|+++++.. +..+...|..+
T Consensus 137 ---~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~----~~~~~~A~~~~~~al~l~P~~~~~~~l~~i 199 (208)
T 3urz_A 137 ---EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLF----TTRYEKARNSLQKVILRFPSTEAQKTLDKI 199 (208)
T ss_dssp ---HHHHHHHHHHHC---CCCHHHHHHHHHHHHHHH----HHTHHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 23466778888888765432 367888888865 559999999999999884 44555555553
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.61 E-value=3.1e-14 Score=130.46 Aligned_cols=209 Identities=13% Similarity=0.056 Sum_probs=151.7
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----C----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC---
Q 020091 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G----STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA--- 171 (331)
Q Consensus 103 a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~--- 171 (331)
.++.+|..+.. .+++++|+.+|++|... + .+.+++++|.+|...|++++|+.+|++|++......
T Consensus 103 ~~~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 178 (378)
T 3q15_A 103 SLFFRGMYEFD----QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS 178 (378)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCH
T ss_pred HHHHHHHHHHH----HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCch
Confidence 56778999998 89999999999999865 3 456889999999999999999999999987633211
Q ss_pred ---------------CccCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH----
Q 020091 172 ---------------QPANAEEAVKLLYQASIA----GH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE---- 224 (331)
Q Consensus 172 ---------------~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~---- 224 (331)
..+++++|+.+|+++++. ++ +.++++||.+|.. .+++++|+.+|++|++
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR----SGDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHh
Confidence 578888888888887653 22 4577788888876 6788888888888876
Q ss_pred -C--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc----CC---HHHHHHHHHHHhccCC---HHHHHHHHHHHH
Q 020091 225 -G--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH---GKAQLEHGLGLFTEGE---MMKAVVYLELAT 291 (331)
Q Consensus 225 -~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~---~~a~~~Lg~~~~~~~~---~~~A~~~~~~A~ 291 (331)
. ....+++++|.+|.. .+++++|..+|+++... ++ ......|+.++...++ +.+|+.++++.-
T Consensus 255 ~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~ 330 (378)
T 3q15_A 255 KVPDLLPKVLFGLSWTLCK----AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN 330 (378)
T ss_dssp HCGGGHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT
T ss_pred hCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC
Confidence 2 236678888888865 44888888888888764 12 2344567777777777 777777777631
Q ss_pred Hc-CCHHHHHHHHHHHhhhchhcHHHHHHHHHhhh
Q 020091 292 RA-GETAADHVKNVILQQLSATSRDRAMLVVDSWR 325 (331)
Q Consensus 292 ~~-~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~ 325 (331)
.. ........++.++ ...++.++|...+++..
T Consensus 331 ~~~~~~~~~~~la~~y--~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 331 LHAYIEACARSAAAVF--ESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp CHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHH
Confidence 11 1122333344444 45566677877777654
No 80
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.60 E-value=3.6e-14 Score=125.72 Aligned_cols=212 Identities=17% Similarity=0.088 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--C----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC---
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S----TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA--- 171 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~--- 171 (331)
...++..|..+.. .+++++|+.+|+++++.. + ..++..+|.++...|++++|+.+|++++.......
T Consensus 5 ~~~l~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 80 (338)
T 3ro2_A 5 CLELALEGERLCK----SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 80 (338)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHH----hccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccH
Confidence 4567788999999 899999999999999864 4 46788999999999999999999999976521111
Q ss_pred --------------CccCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHhcCCCCCCC------------------
Q 020091 172 --------------QPANAEEAVKLLYQASIA----GH----VRAQYQLALCLHRGRGVDFN------------------ 211 (331)
Q Consensus 172 --------------~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~y~~G~g~~~d------------------ 211 (331)
..+++++|+.+|+++++. ++ ..++.++|.+|.. .++
T Consensus 81 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~a~ 156 (338)
T 3ro2_A 81 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA----KGKSFGCPGPQDTGEFPEDVR 156 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HHHTSSSSSCC----CCHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH----cCcccccchhhhhhhhhhhHH
Confidence 678999999999998763 33 4588999999986 677
Q ss_pred --HHHHHHHHHHHHHC----CC----HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc----CC----HHHHHHHHHH
Q 020091 212 --LQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH----GKAQLEHGLG 273 (331)
Q Consensus 212 --~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~ 273 (331)
+++|+.+|+++++. ++ ..++.++|.+|.. .+++++|..+|+++... ++ ..++..+|.+
T Consensus 157 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 232 (338)
T 3ro2_A 157 NALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNA 232 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 99999999998653 32 4578899999976 55999999999999765 33 2377899999
Q ss_pred HhccCCHHHHHHHHHHHHHcC----C----HHHHHHHHHHHhhhchhcHHHHHHHHHhhhc
Q 020091 274 LFTEGEMMKAVVYLELATRAG----E----TAADHVKNVILQQLSATSRDRAMLVVDSWRA 326 (331)
Q Consensus 274 ~~~~~~~~~A~~~~~~A~~~~----~----~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~ 326 (331)
+...|++++|+.+|+++++.. + ..+..+++.+ ....++.++|...+++.++
T Consensus 233 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 233 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT--YTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH--HHHhcCHHHHHHHHHHHHH
Confidence 999999999999999998652 2 2344444444 4566788899888887654
No 81
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.59 E-value=5.5e-15 Score=146.13 Aligned_cols=168 Identities=13% Similarity=0.006 Sum_probs=146.0
Q ss_pred cCCchHHHhHHHHHHHH--------HHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 020091 76 FTLPQLRAASLVCKSWN--------DALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGL 145 (331)
Q Consensus 76 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~ 145 (331)
+..+++++|+..+.+.+ +. +..++.+++.+|.+|.. .+++++|+..|+++++. +++.+++++|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~ 475 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLD----LGDVAKATRKLDDLAERVGWRWRLVWYRAV 475 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHh----cCCHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 78899999988888777 33 24578999999999999 89999999999999976 59999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 146 MYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
+|...|++++|+..|++++++++ +++.+++++|.+|.. .+++++ +.+|++|++.
T Consensus 476 ~~~~~g~~~~A~~~~~~al~l~P---------------------~~~~~~~~lg~~~~~----~g~~~~-~~~~~~al~~ 529 (681)
T 2pzi_A 476 AELLTGDYDSATKHFTEVLDTFP---------------------GELAPKLALAATAEL----AGNTDE-HKFYQTVWST 529 (681)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHST---------------------TCSHHHHHHHHHHHH----HTCCCT-TCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC---------------------CChHHHHHHHHHHHH----cCChHH-HHHHHHHHHh
Confidence 99999999999999999999877 589999999999987 788999 9999999875
Q ss_pred --CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCC
Q 020091 226 --GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGE 279 (331)
Q Consensus 226 --~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~ 279 (331)
++..+++++|.+|.. .+++++|+.+|+++++. .+..+++++|.++...++
T Consensus 530 ~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 530 NDGVISAAFGLARARSA----EGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp CTTCHHHHHHHHHHHHH----TTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred CCchHHHHHHHHHHHHH----cCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 789999999999976 45999999999999877 457889999999877665
No 82
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.56 E-value=9.2e-14 Score=122.98 Aligned_cols=204 Identities=13% Similarity=-0.006 Sum_probs=154.1
Q ss_pred HHHHHHhc-cCCchHHHhHHHHHHHHHHhCCCCC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----CC--
Q 020091 68 VLNKIAAS-FTLPQLRAASLVCKSWNDALRPLRE----AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GS-- 136 (331)
Q Consensus 68 ~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~----~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~~-- 136 (331)
.+.++... ...|++++|...+.+.++.....++ +.++.++|.+|.. .+++++|+.+|++|+.. |+
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~Al~l~~~~g~~~ 114 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKS----GGNSVNAVDSLENAIQIFTHRGQFR 114 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 34444433 3579999999888888776554444 5689999999999 89999999999999865 44
Q ss_pred --HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHH
Q 020091 137 --TLAMVDAGLMYWEM-DKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQ 213 (331)
Q Consensus 137 --~~a~~~lg~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~ 213 (331)
+.++.++|.+|... |++++|+.+|++|+++.+... +. .....++.++|.+|.. .++++
T Consensus 115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~---~~------------~~~~~~~~~lg~~~~~----~g~~~ 175 (292)
T 1qqe_A 115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ---SV------------ALSNKCFIKCADLKAL----DGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT---CH------------HHHHHHHHHHHHHHHH----TTCHH
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC---Ch------------HHHHHHHHHHHHHHHH----hCCHH
Confidence 45789999999996 999999999999987633100 00 0014568899999987 78999
Q ss_pred HHHHHHHHHHHCC--CH-------HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHh--
Q 020091 214 EAARWYLRAAEGG--YV-------RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GK-----AQLEHGLGLF-- 275 (331)
Q Consensus 214 ~A~~~~~~A~~~~--~~-------~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~-----a~~~Lg~~~~-- 275 (331)
+|+.+|+++++.. +. .++.++|.+|.. .+++++|+.+|++++...+ .. ....|+..+.
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~ 251 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA----ATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEG 251 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH----TTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcC
Confidence 9999999998852 21 267899999976 4599999999999987632 22 2345666554
Q ss_pred ccCCHHHHHHHHHHHHHcCCHHH
Q 020091 276 TEGEMMKAVVYLELATRAGETAA 298 (331)
Q Consensus 276 ~~~~~~~A~~~~~~A~~~~~~~a 298 (331)
+.+++++|+..|.++...++...
T Consensus 252 ~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 252 DSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp CTTTHHHHHHHHTTSSCCCHHHH
T ss_pred CHHHHHHHHHHhccCCccHHHHH
Confidence 46789999999999988776553
No 83
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.56 E-value=2.6e-13 Score=115.33 Aligned_cols=104 Identities=12% Similarity=0.009 Sum_probs=81.2
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--C---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCcc
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S---TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPA 174 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 174 (331)
.+.+++.+|..+.. .+++++|+..|++++... + +.+++.+|.+|...|++++|+..|+++++..|...
T Consensus 3 ~~~~~~~~a~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~--- 75 (225)
T 2yhc_A 3 PPNEIYATAQQKLQ----DGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP--- 75 (225)
T ss_dssp CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---
T ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC---
Confidence 57789999999999 899999999999999753 2 47899999999999999999999999998876421
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-C-----------C--CCCCCHHHHHHHHHHHHHC
Q 020091 175 NAEEAVKLLYQASIAGHVRAQYQLALCLHR-G-----------R--GVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 175 ~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~-G-----------~--g~~~d~~~A~~~~~~A~~~ 225 (331)
..+.+++.+|.+|.. | . -..+++++|+..|+++++.
T Consensus 76 ---------------~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 125 (225)
T 2yhc_A 76 ---------------NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG 125 (225)
T ss_dssp ---------------THHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT
T ss_pred ---------------cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH
Confidence 113467777777653 0 0 0146788888888888775
No 84
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.55 E-value=1.5e-13 Score=111.29 Aligned_cols=163 Identities=12% Similarity=0.060 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 020091 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAA 216 (331)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~ 216 (331)
..+++.+|.++...|++++|+.+|++++...+ .++.+++.+|.+|.. .+++++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~----~~~~~~A~ 62 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADA---------------------FDVDVALHLGIAYVK----TGAVDRGT 62 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS---------------------CCHHHHHHHHHHHHH----TTCHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc---------------------cChHHHHHHHHHHHH----cCCHHHHH
Confidence 45678899999999999999999999887755 478999999999987 78999999
Q ss_pred HHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 020091 217 RWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 217 ~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
.+|+++++. .+..++..+|.+|.. .+++++|..+|+++... .+..+++.+|.++...|++++|+.+|+++++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 138 (186)
T 3as5_A 63 ELLERSLADAPDNVKVATVLGLTYVQ----VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALG 138 (186)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Confidence 999999875 678899999999976 55999999999999876 5678899999999999999999999999998
Q ss_pred cCC--HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 293 AGE--TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 293 ~~~--~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
..+ ..+...++.++ ...++.++|...+++..+..|.
T Consensus 139 ~~~~~~~~~~~la~~~--~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 139 LRPNEGKVHRAIAFSY--EQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp HCTTCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHC
T ss_pred cCccchHHHHHHHHHH--HHcCCHHHHHHHHHHHHHcCCC
Confidence 765 45555555555 4567889999999998765554
No 85
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.55 E-value=8.3e-14 Score=107.58 Aligned_cols=110 Identities=14% Similarity=0.123 Sum_probs=95.5
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
.+.++..+|..|+. .|++++|+.+|++|++.. ++.+++++|.+|...|++++|+..|++++++++
T Consensus 12 ~a~~~~~~G~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--------- 78 (126)
T 4gco_A 12 LAQEEKNKGNEYFK----KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS--------- 78 (126)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh---------
Confidence 56778889999998 899999999999998764 888999999999999999999999999988876
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q 020091 178 EAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCY 238 (331)
Q Consensus 178 ~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y 238 (331)
.++.+++++|.+|.. .+++++|+++|+++++. ++..+..+|+.++
T Consensus 79 ------------~~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 79 ------------KFIKGYIRKAACLVA----MREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp ------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred ------------hhhHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 588999999999987 78899999999999765 6788888888775
No 86
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.55 E-value=6.5e-15 Score=117.35 Aligned_cols=136 Identities=14% Similarity=0.044 Sum_probs=108.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 020091 142 DAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLR 221 (331)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~ 221 (331)
+||.++...+++++|+..|++++...+ .++.++++||.+|.. .+++++|+++|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p---------------------~~~~~~~~la~~y~~----~~~~~~A~~~~~~ 56 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPR---------------------QKSIKGFYFAKLYYE----AKEYDLAKKYICT 56 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHH---------------------HHHTTHHHHHHHHHH----TTCHHHHHHHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCc---------------------ccHHHHHHHHHHHHH----cCCHHHHHHHHHH
Confidence 477788777888888888877776543 467788999999987 8999999999999
Q ss_pred HHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHH-HHHHHHcCC-
Q 020091 222 AAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVY-LELATRAGE- 295 (331)
Q Consensus 222 A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~-~~~A~~~~~- 295 (331)
+++. +++.+++++|.+|.. .+++++|+.+|+++++. .++.++++||.+|...|++++|... +++|++..+
T Consensus 57 al~~~p~~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~ 132 (150)
T 4ga2_A 57 YINVQERDPKAHRFLGLLYEL----EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG 132 (150)
T ss_dssp HHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT
T ss_pred HHHhCCCCHHHHHHHHHHHHH----cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC
Confidence 9875 789999999999976 55999999999999987 5789999999999999999887764 699998754
Q ss_pred -HHHHHHHHHHH
Q 020091 296 -TAADHVKNVIL 306 (331)
Q Consensus 296 -~~a~~~l~~~~ 306 (331)
+.+......++
T Consensus 133 ~~~~~~l~~~ll 144 (150)
T 4ga2_A 133 SPAVYKLKEQLL 144 (150)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 44444444443
No 87
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.55 E-value=3.3e-13 Score=120.29 Aligned_cols=188 Identities=16% Similarity=0.146 Sum_probs=111.5
Q ss_pred CCchHHHhHHHHHHHHHHhCC-----CCC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----CC----HHH
Q 020091 77 TLPQLRAASLVCKSWNDALRP-----LRE----AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GS----TLA 139 (331)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~-----~~~----~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a 139 (331)
..|++.+|...+.+..+..+. .++ ...+...|.+|.. .+++++|+.+|.++++. ++ ..+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~ 78 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKN----AKQLEQAKDAYLQEAEAHANNRSLFHAAKA 78 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 345666666555555544332 011 1123334555555 56666666666666543 22 335
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCC----HHHHHHHHHHHhcCCCCCCCHHHH
Q 020091 140 MVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGH----VRAQYQLALCLHRGRGVDFNLQEA 215 (331)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~y~~G~g~~~d~~~A 215 (331)
+.++|.+|...|++++|+.+|++++++ ..+.|+ ..++.++|.+|.. +++++|
T Consensus 79 ~~~lg~~~~~~g~~~~A~~~~~~Al~l-------------------~~~~g~~~~~a~~~~~lg~~~~~-----g~~~~A 134 (307)
T 2ifu_A 79 FEQAGMMLKDLQRMPEAVQYIEKASVM-------------------YVENGTPDTAAMALDRAGKLMEP-----LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHH-------------------HHTTTCHHHHHHHHHHHHHHHTT-----TCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHH-------------------HHHcCCHHHHHHHHHHHHHHHHc-----CCHHHH
Confidence 556666666666666666655555533 222333 3466677777752 677778
Q ss_pred HHHHHHHHHC----CC----HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhccCC
Q 020091 216 ARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH----GKAQLEHGLGLFTEGE 279 (331)
Q Consensus 216 ~~~~~~A~~~----~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~~~~ 279 (331)
+.+|++|++. ++ ..++.++|.+|.. .+++++|+.+|++++.. +. ..+++.+|.++...|+
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~ 210 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVR----QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD 210 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC
Confidence 8887777653 22 4566777777755 34777777777777654 22 2355667777777777
Q ss_pred HHHHHHHHHHHHHcCCHH
Q 020091 280 MMKAVVYLELATRAGETA 297 (331)
Q Consensus 280 ~~~A~~~~~~A~~~~~~~ 297 (331)
+++|+.+|++++ ..+..
T Consensus 211 ~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 211 YVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHHHHHHT-TSTTS
T ss_pred HHHHHHHHHHHh-CCCCC
Confidence 888887777777 55544
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.54 E-value=1.7e-13 Score=118.60 Aligned_cols=153 Identities=14% Similarity=0.073 Sum_probs=125.5
Q ss_pred CCCCHHHHHHHHHHHHhC-------C---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHH
Q 020091 117 VRKNLDKALDSFLKGAAR-------G---STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQA 186 (331)
Q Consensus 117 ~~~~~~~A~~~~~~A~~~-------~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a 186 (331)
..+++++|+.+|++|++. + .+.++..+|.+|...|++++|+.+|++++... ++.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------------~~~ 76 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIR----------------EKT 76 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------------HHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH----------------HHH
Confidence 478888999999988863 2 46688999999999999999999999988652 111
Q ss_pred H---HCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCccccHHHHHH
Q 020091 187 S---IAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----------GYVRAMYNTSLCYSFGEGLPLSHRQARK 253 (331)
Q Consensus 187 ~---~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----------~~~~a~~~lg~~y~~g~g~~~~~~~A~~ 253 (331)
. ....+.++.++|.+|.. .+++++|+.+|+++++. ....++.++|.+|.. .+++++|..
T Consensus 77 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~ 148 (283)
T 3edt_B 77 LGKDHPAVAATLNNLAVLYGK----RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQN----QGKAEEVEY 148 (283)
T ss_dssp TCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT----TTCHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----cCCHHHHHH
Confidence 0 01346788999999987 88999999999999864 235678999999976 459999999
Q ss_pred HHHHHHHc------C-C---HHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 254 WMKRAADC------G-H---GKAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 254 ~~~~a~~~------~-~---~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
+|++++.. . + ..++..||.++...|++++|+.+|+++++.
T Consensus 149 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 149 YYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999876 1 2 457789999999999999999999999875
No 89
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.51 E-value=3.4e-13 Score=130.27 Aligned_cols=147 Identities=12% Similarity=-0.060 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHH
Q 020091 119 KNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQY 196 (331)
Q Consensus 119 ~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~ 196 (331)
+++++|+.+|+++++. +++.+++++|.++...|++++|+.+|+++++..+ +++.+++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---------------------~~~~~~~ 61 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP---------------------GHPEAVA 61 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST---------------------TCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------CCHHHHH
Confidence 4555666666665544 2555666666666666666666666666655544 3555666
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 020091 197 QLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGL 272 (331)
Q Consensus 197 ~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~ 272 (331)
++|.+|.. .+++++|+.+|+++++. ++..+++++|.+|.. .+++++|+.+|+++.+. ++..++.++|.
T Consensus 62 ~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 133 (568)
T 2vsy_A 62 RLGRVRWT----QQRHAEAAVLLQQASDAAPEHPGIALWLGHALED----AGQAEAAAAAYTRAHQLLPEEPYITAQLLN 133 (568)
T ss_dssp HHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHH----CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 66666654 45566666666666543 445556666666644 33566666666666554 34555666666
Q ss_pred HHhcc---CCHHHHHHHHHHHHHcC
Q 020091 273 GLFTE---GEMMKAVVYLELATRAG 294 (331)
Q Consensus 273 ~~~~~---~~~~~A~~~~~~A~~~~ 294 (331)
++... |++++|+.+|+++++.+
T Consensus 134 ~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 134 WRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhhccccHHHHHHHHHHHHhcC
Confidence 66666 66666666666666554
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.49 E-value=1.3e-12 Score=110.98 Aligned_cols=172 Identities=13% Similarity=-0.069 Sum_probs=135.2
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHH
Q 020091 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEA 215 (331)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A 215 (331)
.+.+++.+|..+...|++++|+..|++++...+... ..+.+++++|.+|.. .+++++|
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~------------------~~~~a~~~lg~~~~~----~~~~~~A 60 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGP------------------YSQQVQLDLIYAYYK----NADLPLA 60 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST------------------THHHHHHHHHHHHHH----TTCHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh------------------HHHHHHHHHHHHHHh----cCCHHHH
Confidence 577899999999999999999999999998765310 125799999999987 8899999
Q ss_pred HHHHHHHHHC--CCH---HHHHHHHHHHhcC------------C--CccccHHHHHHHHHHHHHcC--CHHH--------
Q 020091 216 ARWYLRAAEG--GYV---RAMYNTSLCYSFG------------E--GLPLSHRQARKWMKRAADCG--HGKA-------- 266 (331)
Q Consensus 216 ~~~~~~A~~~--~~~---~a~~~lg~~y~~g------------~--g~~~~~~~A~~~~~~a~~~~--~~~a-------- 266 (331)
+..|+++++. ++. .+++.+|.+|... . --.+++++|+..|+++++.. ++.+
T Consensus 61 ~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~ 140 (225)
T 2yhc_A 61 QAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLV 140 (225)
T ss_dssp HHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHH
Confidence 9999999875 333 4899999998641 0 01348999999999999862 3222
Q ss_pred ---------HHHHHHHHhccCCHHHHHHHHHHHHHcCC--H---HHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCCC
Q 020091 267 ---------QLEHGLGLFTEGEMMKAVVYLELATRAGE--T---AADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 331 (331)
Q Consensus 267 ---------~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~--~---~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~~ 331 (331)
.+.+|.+|+..|++++|+..|+++++..+ + .+...++.++. ..++.++|...++++...+|.|
T Consensus 141 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~--~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 141 FLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYR--QMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHH--HcCCcHHHHHHHHHHHhhCCCc
Confidence 25789999999999999999999998743 2 45556555554 5567789999999998888764
No 91
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.48 E-value=6.3e-12 Score=111.90 Aligned_cols=185 Identities=17% Similarity=0.072 Sum_probs=136.5
Q ss_pred HHHHHHHh-ccCCchHHHhHHHHHHHHHHhCCCCC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----CC-
Q 020091 67 DVLNKIAA-SFTLPQLRAASLVCKSWNDALRPLRE----AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GS- 136 (331)
Q Consensus 67 ~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~----~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~~- 136 (331)
..+.++.. ....|++.+|...+.+..+.....++ +.++..+|.+|.. .+++++|+.+|++|++. |+
T Consensus 37 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~Al~l~~~~g~~ 112 (307)
T 2ifu_A 37 SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKD----LQRMPEAVQYIEKASVMYVENGTP 112 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCGGGGHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHHcCCH
Confidence 34555443 34568999998888887776655554 4588999999998 89999999999999998 22
Q ss_pred ---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCC----HHHHHHHHHHHhcCCCCC
Q 020091 137 ---TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGH----VRAQYQLALCLHRGRGVD 209 (331)
Q Consensus 137 ---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~y~~G~g~~ 209 (331)
..++.++|.+|.. |++++|+.+|++|+++ .-..++ ..++.++|.+|.. .
T Consensus 113 ~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~-------------------~~~~~~~~~~~~~~~~lg~~~~~----~ 168 (307)
T 2ifu_A 113 DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV-------------------FENEERLRQAAELIGKASRLLVR----Q 168 (307)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH-------------------HHHTTCHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH-------------------HHhCCChhHHHHHHHHHHHHHHH----c
Confidence 4577899999988 8888888888887754 222333 5678899999987 8
Q ss_pred CCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC--H-----HHHHHHHHHH
Q 020091 210 FNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--G-----KAQLEHGLGL 274 (331)
Q Consensus 210 ~d~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~-----~a~~~Lg~~~ 274 (331)
+++++|+.+|+++++. +. ..++.++|.++.. .+++++|+.+|++++ ... . .....++..+
T Consensus 169 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~ 243 (307)
T 2ifu_A 169 QKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLH----RADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY 243 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999863 32 3467888888865 349999999999998 532 1 1234455544
Q ss_pred hccCCHHHHHH
Q 020091 275 FTEGEMMKAVV 285 (331)
Q Consensus 275 ~~~~~~~~A~~ 285 (331)
..++.+.+..
T Consensus 244 -~~~d~~~~~~ 253 (307)
T 2ifu_A 244 -DEQDEEQLLR 253 (307)
T ss_dssp -HTTCHHHHHH
T ss_pred -HhcCHHHHHH
Confidence 4666554443
No 92
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.48 E-value=1.2e-11 Score=126.66 Aligned_cols=207 Identities=11% Similarity=0.012 Sum_probs=162.3
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC------
Q 020091 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA------ 171 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~------ 171 (331)
-..+.+++.+|..+.. .+++++|+..|.+| +++.++.++|.++.+.|++++|+++|.+|....+...
T Consensus 1102 vn~p~vWsqLAKAql~----~G~~kEAIdsYiKA---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~La 1174 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQ----KGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELI 1174 (1630)
T ss_pred cCCHHHHHHHHHHHHh----CCCHHHHHHHHHhc---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHH
Confidence 3578899999999999 89999999999887 9999999999999999999999999999987763321
Q ss_pred ----CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCcccc
Q 020091 172 ----QPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLS 247 (331)
Q Consensus 172 ----~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~ 247 (331)
..+++++ +..| ++..+...+.++|..+.. .+++++|..+|.+| .-+..++.+|.+ .++
T Consensus 1175 faYAKl~rlee-le~f---I~~~n~ad~~~iGd~le~----eg~YeeA~~~Y~kA------~ny~rLA~tLvk----Lge 1236 (1630)
T 1xi4_A 1175 FALAKTNRLAE-LEEF---INGPNNAHIQQVGDRCYD----EKMYDAAKLLYNNV------SNFGRLASTLVH----LGE 1236 (1630)
T ss_pred HHHHhhcCHHH-HHHH---HhCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhh------hHHHHHHHHHHH----hCC
Confidence 2234442 3333 344566777889999887 78899999999996 467788888866 347
Q ss_pred HHHHHHHHHHHHHcC---------------------------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHH--
Q 020091 248 HRQARKWMKRAADCG---------------------------HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA-- 298 (331)
Q Consensus 248 ~~~A~~~~~~a~~~~---------------------------~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a-- 298 (331)
+++|++.+++|.... +++-...++.+|...|.+++|+.+++.++.......
T Consensus 1237 ~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gm 1316 (1630)
T 1xi4_A 1237 YQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGM 1316 (1630)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHH
Confidence 888888888773221 333445677788889999999999999998875554
Q ss_pred HHHHHHHHhhhchhcHHHHHHHHHhhhcCCC
Q 020091 299 DHVKNVILQQLSATSRDRAMLVVDSWRAMPS 329 (331)
Q Consensus 299 ~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~ 329 (331)
...++.++.+..+++.-++.+.+.+-.+.+|
T Consensus 1317 ftELaiLyaKy~peklmEhlk~f~~rini~k 1347 (1630)
T 1xi4_A 1317 FTELAILYSKFKPQKMREHLELFWSRVNIPK 1347 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhcccch
Confidence 3458999999999999999988877666554
No 93
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.47 E-value=1.2e-12 Score=115.58 Aligned_cols=162 Identities=8% Similarity=-0.061 Sum_probs=132.5
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccC
Q 020091 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPAN 175 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 175 (331)
..++.+++.+|..+.. .+++++|+..|++++.. +++.+++.||.++...|++++|+.+|++++...+
T Consensus 114 p~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p------- 182 (287)
T 3qou_A 114 PREEELXAQQAMQLMQ----ESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ------- 182 (287)
T ss_dssp CCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC-------
T ss_pred CCchhhHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc-------
Confidence 3577889999999988 89999999999998876 4899999999999999999999999998877654
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHH
Q 020091 176 AEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARK 253 (331)
Q Consensus 176 ~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~ 253 (331)
+........+..+.. .++..+|+..|+++++. +++.++++||.+|.. .+++++|+.
T Consensus 183 --------------~~~~~~~~~~~~l~~----~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~----~g~~~~A~~ 240 (287)
T 3qou_A 183 --------------DTRYQGLVAQIELLX----QAADTPEIQQLQQQVAENPEDAALATQLALQLHQ----VGRNEEALE 240 (287)
T ss_dssp --------------SHHHHHHHHHHHHHH----HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHH
T ss_pred --------------chHHHHHHHHHHHHh----hcccCccHHHHHHHHhcCCccHHHHHHHHHHHHH----cccHHHHHH
Confidence 234445555555544 45577789999998764 788999999999976 448999999
Q ss_pred HHHHHHHc--CC--HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 020091 254 WMKRAADC--GH--GKAQLEHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 254 ~~~~a~~~--~~--~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
.|++++.. ++ ..++.+||.++...|+.++|...|++++.
T Consensus 241 ~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 241 LLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999876 34 67889999999999999999999998865
No 94
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.47 E-value=1e-11 Score=110.43 Aligned_cols=182 Identities=8% Similarity=-0.028 Sum_probs=149.7
Q ss_pred HHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHH-HHHHHHHHHhcCCCHHHHHH
Q 020091 82 RAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STL-AMVDAGLMYWEMDKKEAAIS 158 (331)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~-a~~~lg~~~~~~~~~~~A~~ 158 (331)
++|..++.+.++.. ...++.++..+|.++.. .+++++|...|+++++.. ++. ++.++|.++.+.|++++|+.
T Consensus 81 ~~A~~~~~rAl~~~-~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~ 155 (308)
T 2ond_A 81 DEAANIYERAISTL-LKKNMLLYFAYADYEES----RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HHHHHHHHHHHTTT-TTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHh-CcccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHH
Confidence 78887777777631 23578899999999998 899999999999999875 565 89999999999999999999
Q ss_pred HHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHH
Q 020091 159 LYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSL 236 (331)
Q Consensus 159 ~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~ 236 (331)
.|++++...+. ...++...+.+... ..+++++|+..|+++++. +++.++..+|.
T Consensus 156 ~~~~a~~~~p~---------------------~~~~~~~~a~~~~~---~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 211 (308)
T 2ond_A 156 IFKKAREDART---------------------RHHVYVTAALMEYY---CSKDKSVAFKIFELGLKKYGDIPEYVLAYID 211 (308)
T ss_dssp HHHHHHTSTTC---------------------CTHHHHHHHHHHHH---TSCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcCCC---------------------CHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 99999988653 45555555555322 157899999999999764 78899999999
Q ss_pred HHhcCCCccccHHHHHHHHHHHHHc------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCH
Q 020091 237 CYSFGEGLPLSHRQARKWMKRAADC------GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET 296 (331)
Q Consensus 237 ~y~~g~g~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~ 296 (331)
++.. .+++++|+.+|++++.. .....+..++.++...|+.++|...++++++..+.
T Consensus 212 ~~~~----~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 212 YLSH----LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHT----TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHH----CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 9865 34999999999999985 23457788899899999999999999999987654
No 95
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.46 E-value=6.9e-12 Score=114.12 Aligned_cols=239 Identities=13% Similarity=0.032 Sum_probs=170.3
Q ss_pred HHhccCCchHHHhHHHHHHHHHHhCCCCCH----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----CCH----HH
Q 020091 72 IAASFTLPQLRAASLVCKSWNDALRPLREA----MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GST----LA 139 (331)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~~~----~a 139 (331)
+...+..|++++|...+.+.+...+. ++. .++..+|.+|.. .+++++|..+|+++... +++ .+
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHC----KGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCT-TCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 33455678899998888887776543 333 367888999988 89999999999998764 443 34
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcC----CCC-C--------------CccCHHHHHHHHHHHHHCC-------CHH
Q 020091 140 MVDAGLMYWEMDKKEAAISLYRQAAVLG----DPA-A--------------QPANAEEAVKLLYQASIAG-------HVR 193 (331)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~----~~~-~--------------~~~~~~~A~~~~~~a~~~~-------~~~ 193 (331)
+.++|.++...|++++|+.+|++++... ... . ..+++++|..+++++++.. ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 6789999999999999999999998653 210 1 6789999999999987632 246
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CCH-HHHH----HHHHHHhcCCCccccHHHHHHHHHHHHHcCC-
Q 020091 194 AQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GYV-RAMY----NTSLCYSFGEGLPLSHRQARKWMKRAADCGH- 263 (331)
Q Consensus 194 a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~~~-~a~~----~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~- 263 (331)
++.++|.++.. .+++++|..+++++... +.. .... .++.++.. .+++++|..+++++.....
T Consensus 176 ~~~~la~~~~~----~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~a~~~~~~ 247 (373)
T 1hz4_A 176 CLAMLIQCSLA----RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM----TGDKAAAANWLRHTAKPEFA 247 (373)
T ss_dssp HHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHSCCCCCT
T ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH----CCCHHHHHHHHHhCCCCCCC
Confidence 78889998876 78899999999998753 221 1111 23333433 3489999999998876532
Q ss_pred -----HHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCH----HHHHHHHHHHhhhchhcHHHHHHHHHhhh
Q 020091 264 -----GKAQLEHGLGLFTEGEMMKAVVYLELATRA----GET----AADHVKNVILQQLSATSRDRAMLVVDSWR 325 (331)
Q Consensus 264 -----~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~----~~~----~a~~~l~~~~~~l~~~~~~~a~~~~~~~~ 325 (331)
......+|.++...|++++|...+++++.. +.. .+...++.++ ...++.++|...+++.+
T Consensus 248 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 248 NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY--WQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHTCHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHH--HHhCCHHHHHHHHHHHH
Confidence 235578899999999999999999988764 211 2334444444 34566777777776654
No 96
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.46 E-value=2.1e-12 Score=99.56 Aligned_cols=108 Identities=13% Similarity=0.108 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 020091 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAA 216 (331)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~ 216 (331)
++++.++|..|+..|++++|+.+|+++++.++ .++.+++++|.+|.. .+++++|+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p---------------------~~~~~~~~~~~~~~~----~~~~~~A~ 67 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP---------------------ENAILYSNRAACLTK----LMEFQRAL 67 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHH----TTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------CCHHHHHHHhhHHHh----hccHHHHH
Confidence 34455566666666666666666666665544 356666666666654 55566666
Q ss_pred HHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 020091 217 RWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLG 273 (331)
Q Consensus 217 ~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~ 273 (331)
.+|+++++. .++.+++++|.+|.. .+++++|+.+|+++++. ++.+++..|+.+
T Consensus 68 ~~~~~al~~~p~~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 68 DDCDTCIRLDSKFIKGYIRKAACLVA----MREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 666666543 345555555555543 22555555555555444 334444444443
No 97
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.44 E-value=3.2e-13 Score=110.16 Aligned_cols=158 Identities=9% Similarity=-0.063 Sum_probs=125.3
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHH
Q 020091 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEA 179 (331)
Q Consensus 102 ~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A 179 (331)
..++.+|..+.. .+++++|+..|++++.. +++.+++.+|.++...|++++|+..|++++...+
T Consensus 7 ~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p----------- 71 (176)
T 2r5s_A 7 EQLLKQVSELLQ----QGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ----------- 71 (176)
T ss_dssp TTHHHHHHHHHH----TTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-----------
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-----------
Confidence 457788999988 89999999999998765 5999999999999999999999999998877643
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHH
Q 020091 180 VKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKR 257 (331)
Q Consensus 180 ~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 257 (331)
++.....++.+...+ ..+..+|+..|+++++. +++.+++++|.+|.. .+++++|+.+|++
T Consensus 72 -----------~~~~~~~~~~~~~~~---~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~ 133 (176)
T 2r5s_A 72 -----------DNSYKSLIAKLELHQ---QAAESPELKRLEQELAANPDNFELACELAVQYNQ----VGRDEEALELLWN 133 (176)
T ss_dssp -----------CHHHHHHHHHHHHHH---HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHH
T ss_pred -----------ChHHHHHHHHHHHHh---hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cccHHHHHHHHHH
Confidence 233333334332211 11223578999999865 678999999999976 4599999999999
Q ss_pred HHHcC--C--HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 020091 258 AADCG--H--GKAQLEHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 258 a~~~~--~--~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
++... + ..++.+||.++...|+.++|+..|++++.
T Consensus 134 ~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 134 ILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 98874 2 55899999999999999999999998875
No 98
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.44 E-value=2e-12 Score=124.84 Aligned_cols=162 Identities=13% Similarity=-0.044 Sum_probs=124.7
Q ss_pred CchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHH
Q 020091 78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEA 155 (331)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~ 155 (331)
.|++++|...+.+.++..+ .++.+++.+|.+|.. .+++++|+.+|+++++.. ++.+++++|.+|...|++++
T Consensus 2 ~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 75 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP--QDFVAWLMLADAELG----MGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAE 75 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 3677888777777776644 479999999999999 899999999999999875 89999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHH
Q 020091 156 AISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYN 233 (331)
Q Consensus 156 A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~ 233 (331)
|+.+|+++++..+ +++.+++++|.+|.. .+++++|+.+|+++++. ++..++.+
T Consensus 76 A~~~~~~al~~~p---------------------~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~ 130 (568)
T 2vsy_A 76 AAVLLQQASDAAP---------------------EHPGIALWLGHALED----AGQAEAAAAAYTRAHQLLPEEPYITAQ 130 (568)
T ss_dssp HHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhcCC---------------------CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999998876 589999999999987 78999999999999875 67899999
Q ss_pred HHHHHhcCCCccccHHHHHHHHHHHHHcC--CHHHHHHHH
Q 020091 234 TSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKAQLEHG 271 (331)
Q Consensus 234 lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg 271 (331)
+|.+|.. .+-.+++++|..+|+++++.+ +...+..|+
T Consensus 131 l~~~~~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 131 LLNWRRR-LCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHH-TTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHH-hhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 9999976 211259999999999998874 344555554
No 99
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.44 E-value=1.7e-11 Score=108.15 Aligned_cols=166 Identities=8% Similarity=-0.047 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CH------HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCC
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--ST------LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQ 172 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~------~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 172 (331)
...+...+..+.. .+++++|+++|.++.+.. .. ..++.+|.++...|++++|+.+|++++.......
T Consensus 75 ~~~l~~~~~~~~~----~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~- 149 (293)
T 2qfc_A 75 KKQFKDQVIMLCK----QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI- 149 (293)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS-
T ss_pred HHHHHHHHHHHHH----hhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC-
Confidence 4456667888888 899999999999998753 22 3467899999999999999999999987643210
Q ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-----CC----HHHHHHHHHHHhcCCC
Q 020091 173 PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-----GY----VRAMYNTSLCYSFGEG 243 (331)
Q Consensus 173 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~-----~~----~~a~~~lg~~y~~g~g 243 (331)
+. .+...+++++|.+|.. .+++++|+.+|++|++. ++ ..+++++|.+|..
T Consensus 150 --~~------------~~~~~~~~~lg~~y~~----~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~--- 208 (293)
T 2qfc_A 150 --DV------------YQNLYIENAIANIYAE----NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL--- 208 (293)
T ss_dssp --CT------------THHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH---
T ss_pred --ch------------HHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH---
Confidence 00 0125688999999987 88999999999999832 22 2689999999976
Q ss_pred ccccHHHHHHHHHHHHHcC--------CHHHHHHHHHHHhccCCHHHH-HHHHHHHHHc
Q 020091 244 LPLSHRQARKWMKRAADCG--------HGKAQLEHGLGLFTEGEMMKA-VVYLELATRA 293 (331)
Q Consensus 244 ~~~~~~~A~~~~~~a~~~~--------~~~a~~~Lg~~~~~~~~~~~A-~~~~~~A~~~ 293 (331)
.+++++|+.+|++++... ...+++++|.+|...|++++| ..+|++|+..
T Consensus 209 -~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 209 -DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred -HhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 559999999999998652 157889999999999999999 8889999863
No 100
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.43 E-value=1.2e-12 Score=104.35 Aligned_cols=100 Identities=13% Similarity=0.103 Sum_probs=88.0
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCH
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANA 176 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 176 (331)
.++.+++.+|.++.. .+++++|+.+|++++..+ ++.++++||.+|...|++++|+.+|++++.++|
T Consensus 34 ~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-------- 101 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYN----KGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-------- 101 (151)
T ss_dssp HHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS--------
T ss_pred HHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC--------
Confidence 367789999999998 899999999999998874 899999999999999999999999999998876
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC
Q 020091 177 EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY 227 (331)
Q Consensus 177 ~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~ 227 (331)
+++.+++++|.+|.. .+++++|+.+|+++++...
T Consensus 102 -------------~~~~~~~~lg~~~~~----lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 102 -------------NDYTPVFHTGQCQLR----LKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp -------------SCCHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCC
T ss_pred -------------CCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Confidence 588999999999987 7889999999999987643
No 101
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.43 E-value=3.6e-12 Score=106.40 Aligned_cols=95 Identities=17% Similarity=0.100 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHH
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAV 180 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~ 180 (331)
+..++.+|.++.. .+++++|+.+|+++++ .++.+++++|.+|...|++++|+.+|++++...+
T Consensus 6 ~~~~~~~g~~~~~----~~~~~~A~~~~~~a~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------------ 68 (213)
T 1hh8_A 6 AISLWNEGVLAAD----KKDWKGALDAFSAVQD-PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK------------ 68 (213)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHTSSS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------
T ss_pred HHHHHHHHHHHHH----hCCHHHHHHHHHHHcC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------------
Confidence 4567888999888 8999999999998863 3788899999999999999999999998888765
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 181 KLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 181 ~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
+++.+++++|.+|.. .+++++|+.+|+++++.
T Consensus 69 ---------~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 69 ---------HLAVAYFQRGMLYYQ----TEKYDLAIKDLKEALIQ 100 (213)
T ss_dssp ---------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHT
T ss_pred ---------cchHHHHHHHHHHHH----cccHHHHHHHHHHHHHh
Confidence 578889999999887 78899999999998874
No 102
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.42 E-value=1.5e-11 Score=111.83 Aligned_cols=208 Identities=11% Similarity=-0.003 Sum_probs=163.3
Q ss_pred hccCCchHHHhHHHHHHHHHHhCCCCCH----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----C------CHHH
Q 020091 74 ASFTLPQLRAASLVCKSWNDALRPLREA----MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G------STLA 139 (331)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~------~~~a 139 (331)
.....|++++|...+.+.++..+..+++ .++..+|.++.. .|++++|+.+|++++.. + ...+
T Consensus 62 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 137 (373)
T 1hz4_A 62 VLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA----QGFLQTAWETQEKAFQLINEQHLEQLPMHEFL 137 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHhccccCcHHHHH
Confidence 3456799999999888888877666655 457889999999 89999999999999864 2 2356
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC----------------CccCHHHHHHHHHHHHHC----CCH-HHHH--
Q 020091 140 MVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA----------------QPANAEEAVKLLYQASIA----GHV-RAQY-- 196 (331)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~----------------~~~~~~~A~~~~~~a~~~----~~~-~a~~-- 196 (331)
+.++|.++...|++++|+.+|++++...+... ..+++++|..+++++... +.+ ....
T Consensus 138 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 217 (373)
T 1hz4_A 138 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 217 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHH
Confidence 77899999999999999999999998765432 678999999999998753 332 1111
Q ss_pred --HHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC------HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc----CC-
Q 020091 197 --QLALCLHRGRGVDFNLQEAARWYLRAAEGGY------VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH- 263 (331)
Q Consensus 197 --~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~------~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~- 263 (331)
.++.++.. .+++++|..+++++..... ...+..+|.++.. .+++++|..+++++... +.
T Consensus 218 ~~~~~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~l~~a~~~~~~~~~~ 289 (373)
T 1hz4_A 218 NKVRVIYWQM----TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL----LGEFEPAEIVLEELNENARSLRLM 289 (373)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHH----CCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhCcch
Confidence 23344554 6889999999999976532 3356788888876 45999999999998754 32
Q ss_pred ---HHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 264 ---GKAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 264 ---~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
..++..+|.++...|++++|..+|++++..
T Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 290 SDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 246778999999999999999999999865
No 103
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.41 E-value=1.1e-11 Score=103.34 Aligned_cols=129 Identities=16% Similarity=0.124 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 020091 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAA 216 (331)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~ 216 (331)
...++++|.++...|++++|+.+|+++++ .++.+++++|.+|.. .+++++|+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~------------------------~~~~~~~~lg~~~~~----~g~~~~A~ 57 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQD------------------------PHSRICFNIGCMYTI----LKNMTEAE 57 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSSS------------------------CCHHHHHHHHHHHHH----TTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcC------------------------CChHHHHHHHHHHHH----cCCHHHHH
Confidence 34577899999999999999999988741 267899999999987 78999999
Q ss_pred HHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC--CH----------------HHHHHHHHHHhc
Q 020091 217 RWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HG----------------KAQLEHGLGLFT 276 (331)
Q Consensus 217 ~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~----------------~a~~~Lg~~~~~ 276 (331)
.+|+++++. ++..+++++|.+|.. .+++++|+.+|+++++.. +. .+++++|.++..
T Consensus 58 ~~~~~al~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 133 (213)
T 1hh8_A 58 KAFTRSINRDKHLAVAYFQRGMLYYQ----TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK 133 (213)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHH----cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH
Confidence 999999875 688999999999976 459999999999999863 22 889999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCHH
Q 020091 277 EGEMMKAVVYLELATRAGETA 297 (331)
Q Consensus 277 ~~~~~~A~~~~~~A~~~~~~~ 297 (331)
.|++++|+.+|+++++..+..
T Consensus 134 ~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 134 KEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TTCHHHHHHHHHHHHTTCCSG
T ss_pred ccCHHHHHHHHHHHHHcCccc
Confidence 999999999999999987643
No 104
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.41 E-value=2e-11 Score=92.97 Aligned_cols=129 Identities=22% Similarity=0.280 Sum_probs=110.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 020091 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAAR 217 (331)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~ 217 (331)
.+++.+|.++...|++++|+.+|++++...+ .++.+++.+|.++.. .+++++|+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------------------~~~~~~~~~a~~~~~----~~~~~~A~~ 56 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP---------------------RSAEAWYNLGNAYYK----QGDYDEAIE 56 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHH----HTCHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCC---------------------cchhHHHHHHHHHHH----hcCHHHHHH
Confidence 4678899999999999999999998887755 478889999999876 688999999
Q ss_pred HHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 218 WYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 218 ~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
+|++++.. ++..+++.+|.++.. .+++++|..+|+++... .+..+++.+|.++...|++++|..+|+++++.
T Consensus 57 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 57 YYQKALELDPRSAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 99999765 567889999999965 44999999999999876 45788899999999999999999999999876
Q ss_pred CC
Q 020091 294 GE 295 (331)
Q Consensus 294 ~~ 295 (331)
++
T Consensus 133 ~~ 134 (136)
T 2fo7_A 133 DP 134 (136)
T ss_dssp ST
T ss_pred CC
Confidence 54
No 105
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.40 E-value=3.1e-11 Score=115.44 Aligned_cols=217 Identities=10% Similarity=-0.006 Sum_probs=157.1
Q ss_pred HhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCC---CCCCHH-------HHHHHHHHHHh-C--CCHHHHHHHHHHHhc
Q 020091 83 AASLVCKSWNDALRPLREAMVLLRWGKRFKHGRG---VRKNLD-------KALDSFLKGAA-R--GSTLAMVDAGLMYWE 149 (331)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g---~~~~~~-------~A~~~~~~A~~-~--~~~~a~~~lg~~~~~ 149 (331)
.+...+.+.+...| .++.+++.+|.++..-.. ..|+++ +|+..|++|+. . +++..++.+|.++..
T Consensus 256 ~a~~~y~~al~~~p--~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 256 RVMFAYEQCLLVLG--HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56667777777765 479999999999873000 036765 99999999996 3 488999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCH-HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC--
Q 020091 150 MDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHV-RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-- 226 (331)
Q Consensus 150 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~-- 226 (331)
.|++++|+..|++++...+. ++ .++.++|.++.. .+++++|+..|++|++..
T Consensus 334 ~g~~~~A~~~~~~al~~~p~---------------------~~~~~~~~~~~~~~~----~~~~~~A~~~~~~Al~~~~~ 388 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAIEDI---------------------DPTLVYIQYMKFARR----AEGIKSGRMIFKKAREDART 388 (530)
T ss_dssp TTCHHHHHHHHHHHHHSSSS---------------------CHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTCTTC
T ss_pred cCCHHHHHHHHHHHhCcccc---------------------CchHHHHHHHHHHHH----hcCHHHHHHHHHHHHhccCC
Confidence 99999999999999988653 43 578888888765 567889999999998763
Q ss_pred CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--HH--HHH
Q 020091 227 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TA--ADH 300 (331)
Q Consensus 227 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~--~~--a~~ 300 (331)
....+...+.+.... .++.++|..+|+++++. +++..+..++.++...|+.++|..+|++|+...+ +. ...
T Consensus 389 ~~~~~~~~a~~~~~~---~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~l 465 (530)
T 2ooe_A 389 RHHVYVTAALMEYYC---SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 465 (530)
T ss_dssp CTHHHHHHHHHHHHH---TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHH
T ss_pred chHHHHHHHHHHHHH---cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHH
Confidence 334444444442121 33888999999988876 5678888888888888999999999999988642 21 112
Q ss_pred HHHHHHhhhchhcHHHHHHHHHhhhcCCC
Q 020091 301 VKNVILQQLSATSRDRAMLVVDSWRAMPS 329 (331)
Q Consensus 301 ~l~~~~~~l~~~~~~~a~~~~~~~~~~~~ 329 (331)
+...+......|+.+.+..+.++.++..|
T Consensus 466 w~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 466 WARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 22222223445677788877777766555
No 106
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.39 E-value=3.4e-12 Score=112.36 Aligned_cols=189 Identities=14% Similarity=0.084 Sum_probs=138.8
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCH
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANA 176 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 176 (331)
.++.+++.+|.++.. .+++++|+.+|++++... ++.+++++|.+|...|++++|+..|++++.+.+
T Consensus 2 ~~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-------- 69 (281)
T 2c2l_A 2 PSAQELKEQGNRLFV----GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-------- 69 (281)
T ss_dssp CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT--------
T ss_pred hhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--------
Confidence 367889999999999 899999999999999864 899999999999999999999999999999876
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHhcCCCccccHHHHHHH
Q 020091 177 EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVR--AMYNTSLCYSFGEGLPLSHRQARKW 254 (331)
Q Consensus 177 ~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~--a~~~lg~~y~~g~g~~~~~~~A~~~ 254 (331)
+++.+++++|.+|.. .+++++|+.+|+++++.+... .+....+... ...++..|
T Consensus 70 -------------~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~-------~~~~~~~~ 125 (281)
T 2c2l_A 70 -------------QSVKAHFFLGQCQLE----MESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL-------RIAKKKRW 125 (281)
T ss_dssp -------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH-------HHHHHHHH
T ss_pred -------------CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH-------HHHHHHHH
Confidence 589999999999987 789999999999998753211 1111111111 23344555
Q ss_pred HHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHH--HHHHHHhhhchhcHHHHHHHHHhhhc
Q 020091 255 MKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADH--VKNVILQQLSATSRDRAMLVVDSWRA 326 (331)
Q Consensus 255 ~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~--~l~~~~~~l~~~~~~~a~~~~~~~~~ 326 (331)
....... .+......++.++ .|++++|+..|++|++.++.+... .+..+.. -..+..+++.+++.+..+
T Consensus 126 ~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 126 NSIEERRIHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEA-KHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHH-HHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHH-HHHHHHHHHHHHHHhhhc
Confidence 5544433 4556666777754 799999999999999886644322 2222222 122445677777876654
No 107
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.39 E-value=5.4e-11 Score=104.94 Aligned_cols=161 Identities=9% Similarity=-0.025 Sum_probs=126.4
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHH------HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 106 RWGKRFKHGRGVRKNLDKALDSFLKGAARG--STL------AMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 106 ~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~------a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
.....+.. .+++++|..+|+++.+.. .+. .+..+|.++...+++++|+.+|++++....... +.
T Consensus 80 ~~i~~~~~----~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~---~~- 151 (293)
T 3u3w_A 80 DQVIMLCK----QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI---DV- 151 (293)
T ss_dssp HHHHHHHH----TTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCS---CT-
T ss_pred HHHHHHHH----HhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccc---cH-
Confidence 34556666 799999999999998753 333 334689999888999999999999998543211 00
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-----C----CHHHHHHHHHHHhcCCCccccH
Q 020091 178 EAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-----G----YVRAMYNTSLCYSFGEGLPLSH 248 (331)
Q Consensus 178 ~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~-----~----~~~a~~~lg~~y~~g~g~~~~~ 248 (331)
.+...++.+||.+|.. .+++++|+.+|++|++. + ...+++++|.+|.. .+++
T Consensus 152 -----------~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y 212 (293)
T 3u3w_A 152 -----------YQNLYIENAIANIYAE----NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRY 212 (293)
T ss_dssp -----------THHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH----TTCH
T ss_pred -----------HHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH----HhHH
Confidence 0114578999999987 78999999999999841 2 24578999999987 5599
Q ss_pred HHHHHHHHHHHHc----CC----HHHHHHHHHHHhccC-CHHHHHHHHHHHHHc
Q 020091 249 RQARKWMKRAADC----GH----GKAQLEHGLGLFTEG-EMMKAVVYLELATRA 293 (331)
Q Consensus 249 ~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~~~-~~~~A~~~~~~A~~~ 293 (331)
++|+.+++++++. ++ ..+++++|.+|...| ++++|+.+|++|+..
T Consensus 213 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 213 EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 9999999999864 11 678899999999999 579999999999863
No 108
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.37 E-value=3.9e-11 Score=91.37 Aligned_cols=128 Identities=21% Similarity=0.280 Sum_probs=111.1
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHH
Q 020091 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEA 179 (331)
Q Consensus 102 ~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A 179 (331)
.+++.+|.+|.. .+++++|+.+|++++.. .++.+++.+|.++...+++++|+.+|++++...+
T Consensus 2 ~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----------- 66 (136)
T 2fo7_A 2 EAWYNLGNAYYK----QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP----------- 66 (136)
T ss_dssp HHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----------
T ss_pred cHHHHHHHHHHH----cCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-----------
Confidence 567889999998 89999999999999875 4788999999999999999999999999988765
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHH
Q 020091 180 VKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKR 257 (331)
Q Consensus 180 ~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 257 (331)
+++.+++.+|.++.. .+++++|+.+|++++.. .+..+++.+|.+|.. .+++++|..+|++
T Consensus 67 ----------~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 67 ----------RSAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK----QGDYDEAIEYYQK 128 (136)
T ss_dssp ----------TCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHHHH
T ss_pred ----------CchHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----HccHHHHHHHHHH
Confidence 478888999999986 78999999999999875 568889999999975 4599999999999
Q ss_pred HHHcC
Q 020091 258 AADCG 262 (331)
Q Consensus 258 a~~~~ 262 (331)
+....
T Consensus 129 ~~~~~ 133 (136)
T 2fo7_A 129 ALELD 133 (136)
T ss_dssp HHHHS
T ss_pred HHccC
Confidence 87653
No 109
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.36 E-value=6.8e-12 Score=99.99 Aligned_cols=97 Identities=14% Similarity=0.090 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHH
Q 020091 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEA 215 (331)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A 215 (331)
++.+++.+|.++...|++++|+.+|++++..+| +++.++++||.+|.. .+++++|
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P---------------------~~~~~~~~lg~~~~~----~g~~~~A 89 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF---------------------YNVDYIMGLAAIYQI----KEQFQQA 89 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHH----TTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHH----HccHHHH
Confidence 455666677777666666666666666666655 466666666666665 5566666
Q ss_pred HHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc
Q 020091 216 ARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 261 (331)
Q Consensus 216 ~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 261 (331)
+.+|++|++. +++.+++++|.+|.. .+++++|+.+|++++..
T Consensus 90 i~~~~~al~l~P~~~~~~~~lg~~~~~----lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 90 ADLYAVAFALGKNDYTPVFHTGQCQLR----LKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 6666666543 444555555555533 22444444444444444
No 110
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.34 E-value=1.5e-12 Score=117.73 Aligned_cols=161 Identities=14% Similarity=0.102 Sum_probs=130.5
Q ss_pred CCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHH
Q 020091 118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQ 195 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~ 195 (331)
.+++++|+.+|+++++. .++.+++++|.++...|++++|+.+|++++.+.+....... +++. ........++
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~-~~~~-----~~~~~~~~~~ 199 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN-EEAQ-----KAQALRLASH 199 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS-HHHH-----HHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCCh-HHHH-----HHHHHHHHHH
Confidence 45677888888887754 47889999999999999999999999999998775432111 1111 1112236889
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHH
Q 020091 196 YQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHG 271 (331)
Q Consensus 196 ~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg 271 (331)
+++|.+|.. .+++++|+.+|++|++. +++.+++++|.+|.. .+++++|+.+|+++++. .+..++..||
T Consensus 200 ~nla~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~a~~~l~ 271 (336)
T 1p5q_A 200 LNLAMCHLK----LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLA----VNDFELARADFQKVLQLYPNNKAAKTQLA 271 (336)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 999999987 88999999999999875 689999999999976 45999999999999887 5788999999
Q ss_pred HHHhccCCHHHH-HHHHHHHHH
Q 020091 272 LGLFTEGEMMKA-VVYLELATR 292 (331)
Q Consensus 272 ~~~~~~~~~~~A-~~~~~~A~~ 292 (331)
.++...|++++| ...|++...
T Consensus 272 ~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 272 VCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 456766654
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.33 E-value=7.4e-12 Score=101.96 Aligned_cols=158 Identities=10% Similarity=-0.034 Sum_probs=125.7
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMVDAGLM 146 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~ 146 (331)
.+..+...+..|++++|...+.+.++..|+ ++.+++.+|.+|.. .+++++|+.+|++++... ++.....++.+
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 82 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS--RGDVKLAKADCLLE----TKQFELAQELLATIPLEYQDNSYKSLIAKL 82 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT--SHHHHHHHHHHHHH----TTCHHHHHHHHTTCCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHH----CCCHHHHHHHHHHhhhccCChHHHHHHHHH
Confidence 455666678889999999888888877664 79999999999999 899999999999998765 56555555544
Q ss_pred Hh-cCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 147 YW-EMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 147 ~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
.. ..++..+|+..|++++...| +++.+++++|.+|.. .+++++|+.+|+++++.
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P---------------------~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~ 137 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANP---------------------DNFELACELAVQYNQ----VGRDEEALELLWNILKV 137 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHST---------------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTT
T ss_pred HHHhhcccchHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHH----cccHHHHHHHHHHHHHh
Confidence 32 22223346777777776655 689999999999987 88999999999999987
Q ss_pred C----CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHH
Q 020091 226 G----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD 260 (331)
Q Consensus 226 ~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 260 (331)
. +..++.++|.+|.. .++.++|..+|++++.
T Consensus 138 ~p~~~~~~a~~~l~~~~~~----~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 138 NLGAQDGEVKKTFMDILSA----LGQGNAIASKYRRQLY 172 (176)
T ss_dssp CTTTTTTHHHHHHHHHHHH----HCSSCHHHHHHHHHHH
T ss_pred CcccChHHHHHHHHHHHHH----hCCCCcHHHHHHHHHH
Confidence 4 25699999999965 4488999999998864
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.33 E-value=3.3e-11 Score=106.27 Aligned_cols=175 Identities=10% Similarity=-0.053 Sum_probs=139.1
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHH
Q 020091 119 KNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQL 198 (331)
Q Consensus 119 ~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 198 (331)
.+.+.-..++.... -+++++++.+|..+...|++++|+..|++++...+ +++.+++.|
T Consensus 100 ~~~~~l~~~l~~~l-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P---------------------~~~~a~~~l 157 (287)
T 3qou_A 100 QPEEAIRALLDXVL-PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN---------------------QNGEIGLLL 157 (287)
T ss_dssp CCHHHHHHHHHHHS-CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT---------------------SCHHHHHHH
T ss_pred CCHHHHHHHHHHHc-CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC---------------------cchhHHHHH
Confidence 34445555555443 56788999999999999999999999999998877 689999999
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 020091 199 ALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGL 274 (331)
Q Consensus 199 g~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~ 274 (331)
|.+|.. .+++++|+.+|++++.. +.......++..+.. ..+..+|+..|++++.. ++..++++||.+|
T Consensus 158 a~~~~~----~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~----~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l 229 (287)
T 3qou_A 158 AETLIA----LNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLX----QAADTPEIQQLQQQVAENPEDAALATQLALQL 229 (287)
T ss_dssp HHHHHH----TTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHH----HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHH----CCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHh----hcccCccHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 999987 78999999999999765 333444455554543 23667789999999876 6789999999999
Q ss_pred hccCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHhhhchhcHHHHHHHHHhhh
Q 020091 275 FTEGEMMKAVVYLELATRAGE----TAADHVKNVILQQLSATSRDRAMLVVDSWR 325 (331)
Q Consensus 275 ~~~~~~~~A~~~~~~A~~~~~----~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~ 325 (331)
...|++++|+..|+++++..+ ..+..+++.++..+.+. +++...+++.+
T Consensus 230 ~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~--~~a~~~~r~al 282 (287)
T 3qou_A 230 HQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG--DALASXYRRQL 282 (287)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC--CcHHHHHHHHH
Confidence 999999999999999998753 56788888888776554 45666666654
No 113
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.32 E-value=5.3e-11 Score=105.03 Aligned_cols=166 Identities=11% Similarity=-0.023 Sum_probs=126.4
Q ss_pred HHHHhccCCchHHHhHHHHHHHHHHhCCCCC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----CC----H
Q 020091 70 NKIAASFTLPQLRAASLVCKSWNDALRPLRE----AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GS----T 137 (331)
Q Consensus 70 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~~----~ 137 (331)
..+...+..+++.+|...+....+......+ ...++.+|.+|.. .+++++|+.+|++|++. ++ .
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 155 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK----KVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTT----SSCHHHHHHHHHHHHHTCCCCSCTTHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHc----ccCHHHHHHHHHHHHHHhcccccHHHHH
Confidence 3455677889999998888877765443222 2234468999887 78999999999999984 22 4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 020091 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAAR 217 (331)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~ 217 (331)
.++.+||.+|...|++++|+.+|+++++.-... .. .......+++++|.+|.. .+++++|+.
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~--~~------------~~~~~~~~~~nlg~~y~~----~~~y~~A~~ 217 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HD------------NEEFDVKVRYNHAKALYL----DSRYEESLY 217 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--SC------------CHHHHHHHHHHHHHHHHH----TTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--cc------------chhHHHHHHHHHHHHHHH----HhHHHHHHH
Confidence 478999999999999999999999998531100 00 001245688999999987 899999999
Q ss_pred HHHHHHHC----C----CHHHHHHHHHHHhcCCCccc-cHHHHHHHHHHHHHc
Q 020091 218 WYLRAAEG----G----YVRAMYNTSLCYSFGEGLPL-SHRQARKWMKRAADC 261 (331)
Q Consensus 218 ~~~~A~~~----~----~~~a~~~lg~~y~~g~g~~~-~~~~A~~~~~~a~~~ 261 (331)
+|++|++. + .+.+++++|.+|.. .+ ++++|..+|++|...
T Consensus 218 ~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 218 QVNKAIEISCRINSMALIGQLYYQRGECLRK----LEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTBCTTHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH----hCCcHHHHHHHHHHHHHH
Confidence 99999863 2 27889999999976 33 579999999999763
No 114
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.32 E-value=2.6e-11 Score=93.45 Aligned_cols=112 Identities=15% Similarity=0.194 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHH
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEE 178 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 178 (331)
+.++..||..++. .+++++|+.+|++|++.. ++.+++++|.+|...|++++|+..|++++++.+... .++
T Consensus 8 A~a~~~lG~~~~~----~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~-- 79 (127)
T 4gcn_A 8 AIAEKDLGNAAYK----QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR--ADY-- 79 (127)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CCH--
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc--hhh--
Confidence 6778899999999 899999999999999874 899999999999999999999999999998754211 000
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHH
Q 020091 179 AVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-GYVRAMYNT 234 (331)
Q Consensus 179 A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~-~~~~a~~~l 234 (331)
...+.+++++|.+|.. .+++++|+++|+++++. .++.....|
T Consensus 80 ----------~~~a~~~~~lg~~~~~----~~~~~~A~~~~~kal~~~~~~~~~~~l 122 (127)
T 4gcn_A 80 ----------KLIAKAMSRAGNAFQK----QNDLSLAVQWFHRSLSEFRDPELVKKV 122 (127)
T ss_dssp ----------HHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCcCHHHHHHH
Confidence 0124678899999987 88999999999999874 344444333
No 115
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.32 E-value=7.8e-11 Score=103.91 Aligned_cols=166 Identities=12% Similarity=-0.018 Sum_probs=127.1
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCCCC----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--------C
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLR----EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--------S 136 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--------~ 136 (331)
+..+...+..|++++|...+...++..+... ....++.+|.+|.. .+++++|+.+|++|+... .
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK----KVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHT----SSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 3555567788999999888887777654422 12456788999988 789999999999998641 1
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 020091 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAA 216 (331)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~ 216 (331)
..+++++|.+|...|++++|+.+|+++++...... .+.. -...+++++|.+|.. .+++++|+
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~--~~~~------------~~~~~~~nlg~~y~~----~~~y~~Al 216 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALH--DNEE------------FDVKVRYNHAKALYL----DSRYEESL 216 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHH------------HHHHHHHHHHHHHHH----TTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC--cccc------------chHHHHHhHHHHHHH----HhhHHHHH
Confidence 56889999999999999999999999984411000 0000 012688999999987 89999999
Q ss_pred HHHHHHHHCC--------CHHHHHHHHHHHhcCCCccccHHHH-HHHHHHHHH
Q 020091 217 RWYLRAAEGG--------YVRAMYNTSLCYSFGEGLPLSHRQA-RKWMKRAAD 260 (331)
Q Consensus 217 ~~~~~A~~~~--------~~~a~~~lg~~y~~g~g~~~~~~~A-~~~~~~a~~ 260 (331)
.+|++|++.. ...+++++|.+|.. .+++++| ..+|++|..
T Consensus 217 ~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~----~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 217 YQVNKAIEISCRINSMALIGQLYYQRGECLRK----LEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHH
Confidence 9999997641 26789999999976 4489999 888999875
No 116
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.31 E-value=9e-11 Score=93.40 Aligned_cols=128 Identities=16% Similarity=0.088 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHH
Q 020091 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEA 215 (331)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A 215 (331)
.+..++.+|.++...|++++|+.+|++++...+ .++.+++++|.+|.. .+++++|
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~---------------------~~~~~~~~~a~~~~~----~~~~~~A 66 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNP---------------------SNAIYYGNRSLAYLR----TECYGYA 66 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---------------------TCHHHHHHHHHHHHH----TTCHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---------------------CChHHHHHHHHHHHH----cCCHHHH
Confidence 345677788888888888888888888777655 467788888888876 6788888
Q ss_pred HHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHH--HHHHHhccCCHHHHHHHHHH
Q 020091 216 ARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLE--HGLGLFTEGEMMKAVVYLEL 289 (331)
Q Consensus 216 ~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~--Lg~~~~~~~~~~~A~~~~~~ 289 (331)
+.+|+++++. +++.+++.+|.+|.. .+++++|+.+|+++... .+..++.. ++..+...|++++|+.++.+
T Consensus 67 ~~~~~~a~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 67 LGDATRAIELDKKYIKGYYRRAASNMA----LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 8888888764 567788888888865 34888888888888766 34555533 44446777888888888877
Q ss_pred HHH
Q 020091 290 ATR 292 (331)
Q Consensus 290 A~~ 292 (331)
+..
T Consensus 143 ~~~ 145 (166)
T 1a17_A 143 KRS 145 (166)
T ss_dssp HHH
T ss_pred hHH
Confidence 654
No 117
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.31 E-value=1.2e-10 Score=92.61 Aligned_cols=128 Identities=13% Similarity=0.057 Sum_probs=109.0
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
.+..++.+|.++.. .+++++|+.+|++++... ++.+++++|.++...|++++|+.+|.+++...+
T Consensus 12 ~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--------- 78 (166)
T 1a17_A 12 RAEELKTQANDYFK----AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK--------- 78 (166)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---------
Confidence 36788999999999 899999999999998764 899999999999999999999999999998866
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH--HhcCCCccccHHHHHH
Q 020091 178 EAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLC--YSFGEGLPLSHRQARK 253 (331)
Q Consensus 178 ~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~--y~~g~g~~~~~~~A~~ 253 (331)
.++.+++++|.+|.. .+++++|+.+|+++++. ++..++..++.+ +.. .+++++|+.
T Consensus 79 ------------~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~----~~~~~~A~~ 138 (166)
T 1a17_A 79 ------------KYIKGYYRRAASNMA----LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK----QKAFERAIA 138 (166)
T ss_dssp ------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred ------------ccHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 578999999999987 78999999999999875 566777555554 543 458999999
Q ss_pred HHHHHHH
Q 020091 254 WMKRAAD 260 (331)
Q Consensus 254 ~~~~a~~ 260 (331)
++.++..
T Consensus 139 ~~~~~~~ 145 (166)
T 1a17_A 139 GDEHKRS 145 (166)
T ss_dssp HHHHHHH
T ss_pred cccchHH
Confidence 9988754
No 118
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.31 E-value=2.4e-11 Score=106.07 Aligned_cols=183 Identities=9% Similarity=-0.031 Sum_probs=125.0
Q ss_pred CchHHHhHHHHHHHHHHhCCCCCHHHHHHH-------HHHHhcCCCCCCCHHHHHHHHHHHHhC------------CC--
Q 020091 78 LPQLRAASLVCKSWNDALRPLREAMVLLRW-------GKRFKHGRGVRKNLDKALDSFLKGAAR------------GS-- 136 (331)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~L-------G~~y~~g~g~~~~~~~A~~~~~~A~~~------------~~-- 136 (331)
.++..+|...|.+..+..++ .++++..+ +.++.. .....+++..+++++.. |-
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~--~~Daw~g~~a~g~~~~~~L~~----~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~ 92 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDES--ACDAWIGRIRCGDTDRVTLFR----AWYSRRNFGQLSGSVQISMSTLNARIAIGGLYG 92 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHTTCCCHHHHHH----HHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTC
T ss_pred CCCHHHHHHHHHHHHHhChh--hhHHHHhHHHccCCcHHHHHH----HHHHHHHHHHHHHHhcCChhhhhhhhccCCccc
Confidence 45555555555555555443 45555544 444444 34444555555555542 10
Q ss_pred ---------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCC
Q 020091 137 ---------TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRG 207 (331)
Q Consensus 137 ---------~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g 207 (331)
.+....++.++...|++++|...|...+..++ ++. ++|.+|.++..
T Consensus 93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p---------------------~~~-~~~~~a~l~~~--- 147 (282)
T 4f3v_A 93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGS---------------------EHL-VAWMKAVVYGA--- 147 (282)
T ss_dssp CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTC---------------------HHH-HHHHHHHHHHH---
T ss_pred ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---------------------chH-HHHHHHHHHHH---
Confidence 22333445555555555555555555444332 456 99999999987
Q ss_pred CCCCHHHHHHHHHHHHHCCCH----HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhccC
Q 020091 208 VDFNLQEAARWYLRAAEGGYV----RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-----HGKAQLEHGLGLFTEG 278 (331)
Q Consensus 208 ~~~d~~~A~~~~~~A~~~~~~----~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~~~~~~ 278 (331)
.+++++|+.+|+++....++ .+.++||.++.. .+++++|+.||+++.... ..++.+++|.++..+|
T Consensus 148 -~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~----LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lG 222 (282)
T 4f3v_A 148 -AERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN----LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQG 222 (282)
T ss_dssp -TTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHT
T ss_pred -cCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH----CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcC
Confidence 89999999999988776533 489999999965 449999999999998664 3468999999999999
Q ss_pred CHHHHHHHHHHHHHcCCH
Q 020091 279 EMMKAVVYLELATRAGET 296 (331)
Q Consensus 279 ~~~~A~~~~~~A~~~~~~ 296 (331)
+.++|...|+++...++.
T Consensus 223 r~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 223 NESAAVALLEWLQTTHPE 240 (282)
T ss_dssp CHHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHhcCCc
Confidence 999999999999987665
No 119
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.30 E-value=3.5e-10 Score=100.50 Aligned_cols=221 Identities=8% Similarity=-0.090 Sum_probs=153.7
Q ss_pred HHHHHHhccCCchH-HHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCC--CHHHHHHHHHHHHhCC--CHHHHHH
Q 020091 68 VLNKIAASFTLPQL-RAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRK--NLDKALDSFLKGAARG--STLAMVD 142 (331)
Q Consensus 68 ~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~--~~~~A~~~~~~A~~~~--~~~a~~~ 142 (331)
...........+.+ ++|+..+...+..-|+ +..+++.-|.+... .+ ++++++.++.+++..+ +..+++.
T Consensus 35 ~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~--~~taWn~R~~~L~~----l~~~~~~eeL~~~~~~L~~nPk~y~aW~~ 108 (306)
T 3dra_A 35 IMGLLLALMKAEEYSERALHITELGINELAS--HYTIWIYRFNILKN----LPNRNLYDELDWCEEIALDNEKNYQIWNY 108 (306)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHT----CTTSCHHHHHHHHHHHHHHCTTCCHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCcH--HHHHHHHHHHHHHH----cccccHHHHHHHHHHHHHHCcccHHHHHH
Confidence 34444444555555 5898888888888765 78999999999988 55 9999999999999875 8899999
Q ss_pred HHHHH----hcC---CCHHHHHHHHHHHHHcCCCCC-----------CccCHH--HHHHHHHHHHHC--CCHHHHHHHHH
Q 020091 143 AGLMY----WEM---DKKEAAISLYRQAAVLGDPAA-----------QPANAE--EAVKLLYQASIA--GHVRAQYQLAL 200 (331)
Q Consensus 143 lg~~~----~~~---~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~--~A~~~~~~a~~~--~~~~a~~~lg~ 200 (331)
.+.++ ... +++++++.++.++++.++.+. ..+.++ +++.++.++++. .+..|+.+.+.
T Consensus 109 R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ 188 (306)
T 3dra_A 109 RQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFF 188 (306)
T ss_dssp HHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99888 665 789999999999998877544 233444 677777776654 46677777776
Q ss_pred HHhcCCCCCCC------HHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC-----CHHHH
Q 020091 201 CLHRGRGVDFN------LQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-----HGKAQ 267 (331)
Q Consensus 201 ~y~~G~g~~~d------~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~ 267 (331)
++.. .+. ++++++++.+++.. ++..+++.++.++.... +..+....++.+.++.+ ++.+.
T Consensus 189 ll~~----l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~al 261 (306)
T 3dra_A 189 LLFS----KKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFD---RSITQLEEFSLQFVDLEKDQVTSSFAL 261 (306)
T ss_dssp HHHS----SGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT---CCGGGGHHHHHTTEEGGGTEESCHHHH
T ss_pred HHHh----ccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcC---CChHHHHHHHHHHHhccCCCCCCHHHH
Confidence 6654 222 66777777777653 66777777777775432 13444445555544432 56667
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHH-cCCHHHHHH
Q 020091 268 LEHGLGLFTEGEMMKAVVYLELATR-AGETAADHV 301 (331)
Q Consensus 268 ~~Lg~~~~~~~~~~~A~~~~~~A~~-~~~~~a~~~ 301 (331)
..|+.+|.+.|+.++|+..|+++++ .++....++
T Consensus 262 ~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW 296 (306)
T 3dra_A 262 ETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFW 296 (306)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHH
Confidence 7777777777777777777777775 466555444
No 120
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.30 E-value=6e-11 Score=90.64 Aligned_cols=110 Identities=13% Similarity=-0.042 Sum_probs=90.4
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
.+..++.+|..+.. .+++++|+.+|+++++.. ++.+++++|.+|...|++++|+..|++++.+++
T Consensus 3 ~a~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--------- 69 (126)
T 3upv_A 3 KAEEARLEGKEYFT----KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP--------- 69 (126)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------
T ss_pred hHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---------
Confidence 36778889999988 899999999999998764 788999999999999999999999999988876
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHH
Q 020091 178 EAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--------YVRAMYNTSLCY 238 (331)
Q Consensus 178 ~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~--------~~~a~~~lg~~y 238 (331)
+++.+++++|.+|.. .+++++|+.+|+++++.. +..+...++.+.
T Consensus 70 ------------~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 70 ------------NFVRAYIRKATAQIA----VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp ------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred ------------CcHHHHHHHHHHHHH----HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 578899999999987 788999999999987643 344555555544
No 121
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.30 E-value=1.8e-10 Score=94.90 Aligned_cols=94 Identities=17% Similarity=-0.010 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----C-C----HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc-
Q 020091 192 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----G-Y----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC- 261 (331)
Q Consensus 192 ~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~-~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~- 261 (331)
+.++.++|.+|.. .+++++|+.+|+++++. + + ..++.++|.+|.. .+++++|..+|+++...
T Consensus 66 ~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~ 137 (203)
T 3gw4_A 66 HRALHQVGMVERM----AGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALH----FGDLAGARQEYEKSLVYA 137 (203)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHH
Confidence 3445555555554 45555555555555442 2 1 2345555665544 33566666666665532
Q ss_pred ---CCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 262 ---GHG----KAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 262 ---~~~----~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
++. .++.++|.++...|++++|+.+++++++.
T Consensus 138 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 138 QQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 232 34578888888888999998888888764
No 122
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.30 E-value=1.9e-12 Score=119.46 Aligned_cols=207 Identities=11% Similarity=-0.005 Sum_probs=92.9
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHH-----HHcCCCCCCc
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDKKEAAISLYRQA-----AVLGDPAAQP 173 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~ 173 (331)
++.++..++..+.. .+++++|+.+|+.+.+. +++.....|+.+|.+.|+..+++.+|..- ..+|+.....
T Consensus 60 D~~~y~~V~~~ae~----~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~ 135 (449)
T 1b89_A 60 DPSSYMEVVQAANT----SGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDE 135 (449)
T ss_dssp -----------------------------------------------------CHHHHTTTTTCC---------------
T ss_pred CHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHc
Confidence 34455555555544 45555555555554432 23334445555555555555555554321 0111111145
Q ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHH
Q 020091 174 ANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARK 253 (331)
Q Consensus 174 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~ 253 (331)
+.+++|..+|.++ ..+..||.++.+ .+++++|++.|++| +++..+-.++.++.. .++++.|..
T Consensus 136 g~yeeA~~~Y~~a------~n~~~LA~~L~~----Lg~yq~AVea~~KA---~~~~~Wk~v~~aCv~----~~ef~lA~~ 198 (449)
T 1b89_A 136 KMYDAAKLLYNNV------SNFGRLASTLVH----LGEYQAAVDGARKA---NSTRTWKEVCFACVD----GKEFRLAQM 198 (449)
T ss_dssp -CTTTHHHHHHHT------TCHHHHHHHHHT----TTCHHHHHHHHHHH---TCHHHHHHHHHHHHH----TTCHHHHHH
T ss_pred CCHHHHHHHHHHh------hhHHHHHHHHHH----hccHHHHHHHHHHc---CCchhHHHHHHHHHH----cCcHHHHHH
Confidence 5555555555544 344555555554 55566666666655 455555554444433 225555544
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCC
Q 020091 254 WMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 329 (331)
Q Consensus 254 ~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~--~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~ 329 (331)
+..... -+++-...+..+|.+.|.+++|+.+++.++... ......-++.++.+..+++..++.+.+..-.+.+|
T Consensus 199 ~~l~L~--~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k 274 (449)
T 1b89_A 199 CGLHIV--VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 274 (449)
T ss_dssp TTTTTT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHH
T ss_pred HHHHHH--hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcH
Confidence 433211 334444456678899999999999999998764 56777889999999999999999888776555443
No 123
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.29 E-value=7.9e-12 Score=99.13 Aligned_cols=98 Identities=19% Similarity=0.125 Sum_probs=83.1
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCH
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANA 176 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 176 (331)
.++.+++.+|.++.. .+++++|+.+|++++..+ ++.+++++|.++...|++++|+.+|++++.+++
T Consensus 19 ~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-------- 86 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQ----SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-------- 86 (148)
T ss_dssp HHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------
T ss_pred hhHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--------
Confidence 367788888988888 889999999999888764 888888999999888999999999888888766
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 177 EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 177 ~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
+++.+++++|.+|.. .+++++|+.+|+++++.
T Consensus 87 -------------~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 87 -------------XEPRFPFHAAECLLQ----XGELAEAESGLFLAQEL 118 (148)
T ss_dssp -------------TCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred -------------CCchHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 578888999998886 78899999999988764
No 124
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.29 E-value=3.4e-11 Score=96.69 Aligned_cols=111 Identities=18% Similarity=0.125 Sum_probs=95.2
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCH
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANA 176 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 176 (331)
.++.+++.+|.++.. .+++++|+.+|+++++.. ++.+++++|.+|...|++++|+.+|++++.+++
T Consensus 9 ~~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-------- 76 (164)
T 3sz7_A 9 PESDKLKSEGNAAMA----RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-------- 76 (164)
T ss_dssp HHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------
T ss_pred hhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------
Confidence 357889999999999 899999999999999864 899999999999999999999999999998876
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q 020091 177 EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCY 238 (331)
Q Consensus 177 ~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y 238 (331)
+++.+++++|.+|.. .+++++|+.+|+++++. ++..+++..+...
T Consensus 77 -------------~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 77 -------------KYSKAWSRLGLARFD----MADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp -------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred -------------CCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 589999999999987 78999999999999764 5555555555544
No 125
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.28 E-value=6.8e-11 Score=91.09 Aligned_cols=104 Identities=17% Similarity=0.140 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 020091 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAA 216 (331)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~ 216 (331)
+.++.+||..++..|++++|+.+|++|+++.| .++.+++++|.+|.. .+++++|+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p---------------------~~~~~~~nlg~~~~~----~~~~~~A~ 62 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDP---------------------SNITFYNNKAAVYFE----EKKFAECV 62 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHH----TTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------CCHHHHHhHHHHHHH----hhhHHHHH
Confidence 44566777777777777777777777777655 467777777777776 67777777
Q ss_pred HHHHHHHHCCC--HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 020091 217 RWYLRAAEGGY--VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 294 (331)
Q Consensus 217 ~~~~~A~~~~~--~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~ 294 (331)
.+|+++++.+. ......+ ..+++++|.++...|++++|+.+|++++...
T Consensus 63 ~~~~~al~~~~~~~~~~~~~-----------------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 63 QFCEKAVEVGRETRADYKLI-----------------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHHHHHTTCCHHHH-----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCcccchhhHHH-----------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 77777765311 1001111 2355667777777778888888887777653
No 126
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.26 E-value=1.3e-10 Score=104.94 Aligned_cols=127 Identities=10% Similarity=0.039 Sum_probs=111.3
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--C---------------HHHHHHHHHHHhcCCCHHHHHHHHHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S---------------TLAMVDAGLMYWEMDKKEAAISLYRQ 162 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~---------------~~a~~~lg~~~~~~~~~~~A~~~~~~ 162 (331)
++.+++.+|.+|+. .+++++|+.+|++|+... + +.+++++|.+|...|++++|+.+|++
T Consensus 146 ~a~~~~~~g~~~~~----~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 221 (336)
T 1p5q_A 146 QSTIVKERGTVYFK----EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK 221 (336)
T ss_dssp HHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 57899999999999 999999999999999874 4 68999999999999999999999999
Q ss_pred HHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhc
Q 020091 163 AAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSF 240 (331)
Q Consensus 163 a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~ 240 (331)
++.+.+ +++.+++++|.+|.. .+++++|+.+|+++++. ++..++.++|.++..
T Consensus 222 al~~~p---------------------~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 222 ALELDS---------------------NNEKGLSRRGEAHLA----VNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHHCT---------------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHhCC---------------------CcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 999876 589999999999987 88999999999999875 688999999999976
Q ss_pred CCCccccHHHH-HHHHHHHH
Q 020091 241 GEGLPLSHRQA-RKWMKRAA 259 (331)
Q Consensus 241 g~g~~~~~~~A-~~~~~~a~ 259 (331)
.+++++| ...|++..
T Consensus 277 ----~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 277 ----IRRQLAREKKLYANMF 292 (336)
T ss_dssp ----HHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHH
Confidence 4477777 44555543
No 127
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.26 E-value=7.6e-12 Score=109.21 Aligned_cols=200 Identities=13% Similarity=0.083 Sum_probs=152.0
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHH-------HHHHhcCCCHHHHHHHHHHHHHcCCCCCCc
Q 020091 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDA-------GLMYWEMDKKEAAISLYRQAAVLGDPAAQP 173 (331)
Q Consensus 103 a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~l-------g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 173 (331)
.++..|.-+ . .+|+..|.+.|.+++... .++++..+ +.++....+..+++..+++++.+.+....
T Consensus 9 ~~~~~~~~~-~----~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~- 82 (282)
T 4f3v_A 9 SLFESAVSM-L----PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLN- 82 (282)
T ss_dssp HHHHHHHHH-T----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGC-
T ss_pred HHHHHHhcc-c----CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhh-
Confidence 345555555 3 699999999999999875 89999988 78888877788888888888875442100
Q ss_pred cCHHHHHHHHHHHHH-CC-----------CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHh
Q 020091 174 ANAEEAVKLLYQASI-AG-----------HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YVRAMYNTSLCYS 239 (331)
Q Consensus 174 ~~~~~A~~~~~~a~~-~~-----------~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~--~~~a~~~lg~~y~ 239 (331)
-... .| -.+....++.++.. .+++++|.+.|......+ +. +++.+|.++.
T Consensus 83 -----------a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~----~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~ 146 (282)
T 4f3v_A 83 -----------ARIAIGGLYGDITYPVTSPLAITMGFAACEAA----QGNYADAMEALEAAPVAGSEHL-VAWMKAVVYG 146 (282)
T ss_dssp -----------CEEECCTTTCCCEEECSSHHHHHHHHHHHHHH----HTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHH
T ss_pred -----------hhhccCCcccccccccCCHhHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHH
Confidence 0000 01 13455567777876 788999999999987654 45 8999999998
Q ss_pred cCCCccccHHHHHHHHHHHHHcCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhhhc
Q 020091 240 FGEGLPLSHRQARKWMKRAADCGH----GKAQLEHGLGLFTEGEMMKAVVYLELATRAG-----ETAADHVKNVILQQLS 310 (331)
Q Consensus 240 ~g~g~~~~~~~A~~~~~~a~~~~~----~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~-----~~~a~~~l~~~~~~l~ 310 (331)
. .+++++|+.+|+.+....+ ..++++||.++...|++++|+.+|++++... ..++.++.+.++. .
T Consensus 147 ~----~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~--~ 220 (282)
T 4f3v_A 147 A----AERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARR--S 220 (282)
T ss_dssp H----TTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHH--H
T ss_pred H----cCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHH--H
Confidence 7 6699999999998876543 3589999999999999999999999998543 2345666666655 5
Q ss_pred hhcHHHHHHHHHhhhcCCCC
Q 020091 311 ATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 311 ~~~~~~a~~~~~~~~~~~~~ 330 (331)
.++.++|...++++....|.
T Consensus 221 lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 221 QGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HTCHHHHHHHHHHHHHHSCC
T ss_pred cCCHHHHHHHHHHHHhcCCc
Confidence 56778999999999887774
No 128
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.26 E-value=1.4e-10 Score=88.59 Aligned_cols=112 Identities=13% Similarity=0.127 Sum_probs=89.2
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCH
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANA 176 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 176 (331)
.++.+++.+|.++.. .+++++|+.+|+++++.. ++.+++.+|.++...+++++|+.+|++++...+
T Consensus 14 ~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-------- 81 (133)
T 2lni_A 14 DLALMVKNKGNECFQ----KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-------- 81 (133)
T ss_dssp CHHHHHHHHHHHHHH----TTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT--------
T ss_pred ccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--------
Confidence 457788888888888 788888888888888764 788888888888888888888888888887755
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHh
Q 020091 177 EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYS 239 (331)
Q Consensus 177 ~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~ 239 (331)
.++.+++++|.+|.. .+++++|+.+|+++++. .+..++..++.++.
T Consensus 82 -------------~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 82 -------------TFIKGYTRKAAALEA----MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp -------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred -------------CchHHHHHHHHHHHH----HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 467888888888876 67888888888888765 45667777777764
No 129
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.25 E-value=3.7e-11 Score=95.23 Aligned_cols=94 Identities=16% Similarity=0.035 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHH
Q 020091 192 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQ 267 (331)
Q Consensus 192 ~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~ 267 (331)
+.+++++|.++.. .+++++|+.+|++++.. .++.+++++|.+|.. .+++++|+.+|++++.. +++.++
T Consensus 21 ~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~ 92 (148)
T 2vgx_A 21 LEQLYSLAFNQYQ----SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA----MGQYDLAIHSYSYGAVMDIXEPRFP 92 (148)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCTHHH
T ss_pred HHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCCCCchHH
Confidence 3344444444433 34444444444444332 334444444444433 22444444444444443 345666
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 268 LEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 268 ~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
+++|.+|...|++++|+.+|+++++.
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66666666667777777777766665
No 130
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.24 E-value=4.6e-10 Score=115.14 Aligned_cols=217 Identities=16% Similarity=0.082 Sum_probs=154.9
Q ss_pred ccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHH
Q 020091 75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKE 154 (331)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~ 154 (331)
....|.+++|..+|+ ++. .+..+ ++.++.. .+++++|++++++. ..+.+++.+|..+...|+++
T Consensus 1059 ai~lglyEEAf~IYk----Ka~--~~~~A---~~VLie~----i~nldrAiE~Aerv---n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFR----KFD--VNTSA---VQVLIEH----IGNLDRAYEFAERC---NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHhCCCHHHHHHHHH----HcC--CHHHH---HHHHHHH----HhhHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCHH
Confidence 456678888855544 322 12222 2444545 67888888888755 77999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCC---------CccCHHHHHHHHHHHHHCC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 155 AAISLYRQAAVLGDPAA---------QPANAEEAVKLLYQASIAG-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 155 ~A~~~~~~a~~~~~~~~---------~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
+|+..|.+| +++.. ..+++++|+.+|..|.+.. .+.+...+|.+|.. .+++++ ++.| +.
T Consensus 1123 EAIdsYiKA---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAK----l~rlee-le~f---I~ 1191 (1630)
T 1xi4_A 1123 EAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAK----TNRLAE-LEEF---IN 1191 (1630)
T ss_pred HHHHHHHhc---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHh----hcCHHH-HHHH---Hh
Confidence 999999887 22222 7889999999999987753 34455579998886 456664 4444 34
Q ss_pred CCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHH----
Q 020091 225 GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADH---- 300 (331)
Q Consensus 225 ~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~---- 300 (331)
..+...+..+|..+.. .+++++|..+|.+| ..+..||.+|...|++++|+..+++|.+ ..++.
T Consensus 1192 ~~n~ad~~~iGd~le~----eg~YeeA~~~Y~kA------~ny~rLA~tLvkLge~q~AIEaarKA~n---~~aWkev~~ 1258 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYD----EKMYDAAKLLYNNV------SNFGRLASTLVHLGEYQAAVDGARKANS---TRTWKEVCF 1258 (1630)
T ss_pred CCCHHHHHHHHHHHHh----cCCHHHHHHHHHhh------hHHHHHHHHHHHhCCHHHHHHHHHHhCC---HHHHHHHHH
Confidence 4566777889999976 55999999999997 5788899999999999999999998833 23321
Q ss_pred ------------------------HHHHHHhhhchhcHHHHHHHHHhhhcCCCCC
Q 020091 301 ------------------------VKNVILQQLSATSRDRAMLVVDSWRAMPSLH 331 (331)
Q Consensus 301 ------------------------~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~~ 331 (331)
.-..+...-..+..++++.+++..+..++.|
T Consensus 1259 acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH 1313 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAH 1313 (1630)
T ss_pred HHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhH
Confidence 1122222344566777777777776666654
No 131
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.23 E-value=7.8e-11 Score=92.33 Aligned_cols=97 Identities=16% Similarity=0.093 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
++.+++.+|.++.. .+++++|+.+|++++..+ ++.+++.+|.+|...|++++|+.+|++++.+++
T Consensus 17 ~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------- 83 (142)
T 2xcb_A 17 TLEQLYALGFNQYQ----AGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI--------- 83 (142)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHHHHHHHHHH----HccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---------
Confidence 56788889999988 899999999999998764 888999999999999999999999999998876
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 178 EAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 178 ~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
+++.+++++|.+|.. .+++++|+.+|+++++.
T Consensus 84 ------------~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 84 ------------NEPRFPFHAAECHLQ----LGDLDGAESGFYSARAL 115 (142)
T ss_dssp ------------TCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred ------------CCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 588899999999987 78899999999998764
No 132
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.23 E-value=3.2e-10 Score=93.39 Aligned_cols=154 Identities=16% Similarity=0.044 Sum_probs=117.9
Q ss_pred ccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----C----CHHHHHHHHHH
Q 020091 75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G----STLAMVDAGLM 146 (331)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~----~~~a~~~lg~~ 146 (331)
.+..|++.+|...+..+ ...+ ...+.++..+|.+|.. .+++++|+.+|++++.. + .+.++.++|.+
T Consensus 2 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 75 (203)
T 3gw4_A 2 AFEAHDYALAERQAQAL-LAHP-ATASGARFMLGYVYAF----MDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMV 75 (203)
T ss_dssp -----CHHHHHHHHHHH-HTST-TTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHh-cCCh-HHHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 35678899997643322 2222 2578899999999999 89999999999999872 2 45678999999
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 020091 147 YWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAG-----HVRAQYQLALCLHRGRGVDFNLQEAARWYLR 221 (331)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~ 221 (331)
+...|++++|+.+|++++.... ..+ ...+++++|.+|.. .+++++|+.+|++
T Consensus 76 ~~~~g~~~~A~~~~~~al~~~~-------------------~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 76 ERMAGNWDAARRCFLEERELLA-------------------SLPEDPLAASANAYEVATVALH----FGDLAGARQEYEK 132 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHH-------------------HSCCCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHH-------------------HcCccHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHH
Confidence 9999999999999999887511 112 24578899999987 7899999999999
Q ss_pred HHHC----CCH----HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc
Q 020091 222 AAEG----GYV----RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 261 (331)
Q Consensus 222 A~~~----~~~----~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 261 (331)
+++. ++. .++.++|.+|.. .+++++|..+|+++.+.
T Consensus 133 al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 133 SLVYAQQADDQVAIACAFRGLGDLAQQ----EKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHH----CcCHHHHHHHHHHHHHH
Confidence 9753 443 346899999976 44999999999999764
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.22 E-value=2.9e-10 Score=86.76 Aligned_cols=114 Identities=11% Similarity=0.065 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHH
Q 020091 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEA 215 (331)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A 215 (331)
++.+++.+|.++...+++++|+.+|++++...+ .++.+++++|.+|.. .+++++|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~---------------------~~~~~~~~la~~~~~----~~~~~~A 69 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP---------------------KDAKLYSNRAACYTK----LLEFQLA 69 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT---------------------TCHHHHHHHHHHHTT----TTCHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------------------CcHHHHHHHHHHHHH----hccHHHH
Confidence 455666666666666666666666666666544 356666666666654 5666666
Q ss_pred HHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccC
Q 020091 216 ARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEG 278 (331)
Q Consensus 216 ~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~ 278 (331)
+.+|+++++. .+..+++.+|.+|.. .+++++|+.+|+++... .+..++..++.++...|
T Consensus 70 ~~~~~~a~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 70 LKDCEECIQLEPTFIKGYTRKAAALEA----MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHH----HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 6666666553 445566666666644 33566666666666554 23455555555554433
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.21 E-value=8.9e-11 Score=95.22 Aligned_cols=118 Identities=12% Similarity=0.044 Sum_probs=95.5
Q ss_pred CccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH-HhcCCCccc
Q 020091 172 QPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLC-YSFGEGLPL 246 (331)
Q Consensus 172 ~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~-y~~g~g~~~ 246 (331)
..+++++|+.+|+++++ +.++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+ |.. .+
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~----~~ 93 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLW----QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ----AS 93 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH----TT
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----cC
Confidence 34455555555555544 3689999999999987 78999999999999764 689999999999 644 23
Q ss_pred cH--HHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHH
Q 020091 247 SH--RQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA 297 (331)
Q Consensus 247 ~~--~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~ 297 (331)
++ ++|+.+|++++.. .+..+++.+|.++...|++++|+.+|+++++..+..
T Consensus 94 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 94 QHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred CcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 66 9999999999887 568899999999999999999999999999986643
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.21 E-value=1.7e-10 Score=93.59 Aligned_cols=121 Identities=10% Similarity=0.074 Sum_probs=95.9
Q ss_pred ccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHH-HhcCC
Q 020091 75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLM-YWEMD 151 (331)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~-~~~~~ 151 (331)
.+..|++++|...+...++..+ .++.+++.+|.+|.. .+++++|+.+|++++.. .++.+++.+|.+ +...+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~ 93 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANP--QNSEQWALLGEYYLW----QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQAS 93 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCC--SCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT
T ss_pred hhhccCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence 3556778888877777777655 478889999999988 89999999999998875 488889999988 77788
Q ss_pred CH--HHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC
Q 020091 152 KK--EAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG 226 (331)
Q Consensus 152 ~~--~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~ 226 (331)
++ ++|+.+|++++...+ +++.+++++|.+|.. .+++++|+.+|+++++..
T Consensus 94 ~~~~~~A~~~~~~al~~~p---------------------~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 94 QHMTAQTRAMIDKALALDS---------------------NEITALMLLASDAFM----QANYAQAIELWQKVMDLN 145 (177)
T ss_dssp TCCCHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTC
T ss_pred CcchHHHHHHHHHHHHhCC---------------------CcHHHHHHHHHHHHH----cccHHHHHHHHHHHHhhC
Confidence 87 888888888888765 578888999998887 788999999999988753
No 136
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.20 E-value=8.3e-10 Score=102.10 Aligned_cols=202 Identities=12% Similarity=0.017 Sum_probs=157.1
Q ss_pred hHHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCH---------------HHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 020091 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREA---------------MVLLRWGKRFKHGRGVRKNLDKALDSFL 129 (331)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------------~a~~~LG~~y~~g~g~~~~~~~A~~~~~ 129 (331)
|...+..+......|++.+|...+...++..+..++. .++..||.+|.. .+++++|.++|.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~----~~~~~~a~~~~~ 79 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVT----MGAKDKLREFIP 79 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHH----HTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHH----CCCHHHHHHHHH
Confidence 5567788888888999999999999988877665432 468999999999 999999999999
Q ss_pred HHHhC----CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 020091 130 KGAAR----GS----TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALC 201 (331)
Q Consensus 130 ~A~~~----~~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 201 (331)
++... +. ......+|.++...+++++|+.+|++++....... -.........+||.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~~~~~~la~~ 144 (434)
T 4b4t_Q 80 HSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK---------------RVFLKHSLSIKLATL 144 (434)
T ss_dssp HTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS---------------CCSSHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC---------------ccHHHHHHHHHHHHH
Confidence 98753 22 23456788888888999999999888765411000 001236788999999
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc----CCH-----
Q 020091 202 LHRGRGVDFNLQEAARWYLRAAEG--------GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GHG----- 264 (331)
Q Consensus 202 y~~G~g~~~d~~~A~~~~~~A~~~--------~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~----- 264 (331)
|.. .+++.+|..+++++... ....++..+|.+|.. .+|+++|..+|+++... +++
T Consensus 145 ~~~----~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 145 HYQ----KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK----LRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHH----HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHH----ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 987 78999999999998652 235678899999976 56999999999998754 222
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 265 KAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 265 ~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
..+..+|.++...+++++|..+|..+.+.
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34567899899999999999999999763
No 137
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.20 E-value=2.5e-11 Score=100.58 Aligned_cols=154 Identities=12% Similarity=0.075 Sum_probs=109.3
Q ss_pred CCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHH
Q 020091 118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQ 195 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~ 195 (331)
.+++++|.+.+...... ..+..+..+|.++...+++++|+.+|.+++...+........ .+.-....+ ...++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~~~---~~~~~ 91 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ--ILLDKKKNI---EISCN 91 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH--HHHHHHHHH---HHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh--hHHHHHHHH---HHHHH
Confidence 67788887777755433 467788999999999999999999999999986543211111 000000111 14788
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHH
Q 020091 196 YQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHG 271 (331)
Q Consensus 196 ~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg 271 (331)
+++|.+|.. .+++++|+.+|+++++. ++..+++.+|.+|.. .+++++|+.+|++++.. .+..++..++
T Consensus 92 ~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 163 (198)
T 2fbn_A 92 LNLATCYNK----NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMY----FGFLEEAKENLYKAASLNPNNLDIRNSYE 163 (198)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHH----hcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 899999987 78899999999999775 678888899998866 55889999999988776 5677888888
Q ss_pred HHHhccCCHHHHH
Q 020091 272 LGLFTEGEMMKAV 284 (331)
Q Consensus 272 ~~~~~~~~~~~A~ 284 (331)
.++...++.+++.
T Consensus 164 ~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 164 LCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHH
Confidence 8887777666666
No 138
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.19 E-value=8.3e-10 Score=82.07 Aligned_cols=110 Identities=14% Similarity=0.025 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
.+.+++.+|.++.. .+++++|+.+|++++.. +++.+++.+|.++...+++++|+.+|++++...+
T Consensus 3 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------- 69 (118)
T 1elw_A 3 QVNELKEKGNKALS----VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP--------- 69 (118)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---------
T ss_pred hHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc---------
Confidence 45678888888888 78888888888888775 3788888888888888888888888888887765
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q 020091 178 EAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCY 238 (331)
Q Consensus 178 ~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y 238 (331)
.++.+++++|.+|.. .+++++|+.+|+++++. ++..++..++.+.
T Consensus 70 ------------~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 70 ------------DWGKGYSRKAAALEF----LNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp ------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred ------------ccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 477888888888876 67888888888888775 5667777777664
No 139
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.18 E-value=5.5e-10 Score=85.20 Aligned_cols=96 Identities=13% Similarity=0.042 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHH
Q 020091 191 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKA 266 (331)
Q Consensus 191 ~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a 266 (331)
.+.+++++|..+.. .+++++|+.+|+++++. +++.+++++|.+|.. .+++++|+.+|++++.. .+..+
T Consensus 3 ~a~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~ 74 (126)
T 3upv_A 3 KAEEARLEGKEYFT----KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK----LMSFPEAIADCNKAIEKDPNFVRA 74 (126)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCcHHH
Confidence 35778999999987 78999999999999875 678999999999976 55999999999999987 56889
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 020091 267 QLEHGLGLFTEGEMMKAVVYLELATRAG 294 (331)
Q Consensus 267 ~~~Lg~~~~~~~~~~~A~~~~~~A~~~~ 294 (331)
++.+|.++...|++++|+.+|+++++.+
T Consensus 75 ~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 75 YIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999876
No 140
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.18 E-value=1.6e-10 Score=90.48 Aligned_cols=80 Identities=11% Similarity=-0.073 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHH
Q 020091 210 FNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVV 285 (331)
Q Consensus 210 ~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~ 285 (331)
+++++|+.+|++++.. .++.+++.+|.+|.. .+++++|+.+|++++.. .++.+++++|.+|...|++++|+.
T Consensus 32 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 107 (142)
T 2xcb_A 32 GKWDDAQKIFQALCMLDHYDARYFLGLGACRQS----LGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAES 107 (142)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 3444444444444332 234444444444432 22444444444444433 344555556666666666666666
Q ss_pred HHHHHHHc
Q 020091 286 YLELATRA 293 (331)
Q Consensus 286 ~~~~A~~~ 293 (331)
+|+++++.
T Consensus 108 ~~~~al~~ 115 (142)
T 2xcb_A 108 GFYSARAL 115 (142)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666554
No 141
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.18 E-value=8.8e-10 Score=83.44 Aligned_cols=112 Identities=17% Similarity=0.120 Sum_probs=87.0
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
++.+++.+|.++.. .+++++|+.+|++++.. .++.+++.+|.++...+++++|+.+|.+++...+
T Consensus 11 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------- 77 (131)
T 2vyi_A 11 EAERLKTEGNEQMK----VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP--------- 77 (131)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------
T ss_pred hhHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc---------
Confidence 46677888888888 78888888888888765 3778888888888888888888888888877655
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhc
Q 020091 178 EAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSF 240 (331)
Q Consensus 178 ~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~ 240 (331)
.++.+++.+|.+|.. .+++++|+.+|+++++. ++..++..+|.++..
T Consensus 78 ------------~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 78 ------------AYSKAYGRMGLALSS----LNKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126 (131)
T ss_dssp ------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred ------------cCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 467788888888876 67788888888888764 567777777777743
No 142
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.17 E-value=5.4e-10 Score=89.54 Aligned_cols=93 Identities=18% Similarity=0.036 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHH
Q 020091 193 RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQL 268 (331)
Q Consensus 193 ~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~ 268 (331)
.+++.+|.+|.. .+++++|+.+|+++++. +++.+++++|.+|.. .+++++|+.+|++++.. .+..+++
T Consensus 12 ~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~ 83 (164)
T 3sz7_A 12 DKLKSEGNAAMA----RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSA----SGQHEKAAEDAELATVVDPKYSKAWS 83 (164)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 334444444443 34444444444444432 334444444444433 22444455555444443 3345555
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 269 EHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 269 ~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
++|.+|...|++++|+.+|+++++.
T Consensus 84 ~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 84 RLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHh
Confidence 5555555566666666666666554
No 143
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.17 E-value=6.9e-10 Score=85.56 Aligned_cols=99 Identities=22% Similarity=0.233 Sum_probs=88.8
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccC
Q 020091 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPAN 175 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 175 (331)
..++..++.+|.++.. .+++++|+.+|++++... ++.+++++|.++...+++++|+.+|++++...+
T Consensus 6 ~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p------- 74 (137)
T 3q49_B 6 SPSAQELKEQGNRLFV----GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG------- 74 (137)
T ss_dssp CCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------
T ss_pred cccHHHHHHHHHHHHH----hCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-------
Confidence 3478899999999999 899999999999998864 789999999999999999999999999998876
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 176 AEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 176 ~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
+++.+++++|.+|.. .+++++|+.+|+++++.
T Consensus 75 --------------~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 75 --------------QSVKAHFFLGQCQLE----MESYDEAIANLQRAYSL 106 (137)
T ss_dssp --------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred --------------hhHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHH
Confidence 588999999999987 78999999999999864
No 144
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.8e-09 Score=83.92 Aligned_cols=112 Identities=13% Similarity=0.038 Sum_probs=93.4
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-C----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCc
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-S----TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQP 173 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 173 (331)
.++..++.+|.++.. .+++++|+.+|+++++.. + +.+++++|.+|...+++++|+.+|++++...+
T Consensus 26 ~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----- 96 (148)
T 2dba_A 26 SSVEQLRKEGNELFK----CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG----- 96 (148)
T ss_dssp CCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-----
T ss_pred HHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-----
Confidence 467888889999988 899999999999998875 2 77888999999999999999999988888765
Q ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHh
Q 020091 174 ANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYS 239 (331)
Q Consensus 174 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~ 239 (331)
.++.+++++|.+|.. .+++++|+.+|+++++. ++..++..++.+..
T Consensus 97 ----------------~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 97 ----------------GDVKALYRRSQALEK----LGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp ----------------CCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred ----------------cCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 478889999998886 78899999999998765 56777777777763
No 145
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.16 E-value=9.1e-10 Score=83.36 Aligned_cols=115 Identities=18% Similarity=0.099 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHH
Q 020091 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEA 215 (331)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A 215 (331)
++.+++.+|.++...+++++|+.+|++++...+ .++.+++.+|.+|.. .+++++|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---------------------~~~~~~~~~a~~~~~----~~~~~~A 65 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP---------------------ANAVYFCNRAAAYSK----LGNYAGA 65 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHH----TTCHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC---------------------CCHHHHHHHHHHHHH----hhchHHH
Confidence 345566666677666677777776666666544 356666677776665 5667777
Q ss_pred HHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCC
Q 020091 216 ARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGE 279 (331)
Q Consensus 216 ~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~ 279 (331)
+.+|+++++. .+..+++.+|.+|.. .+++++|+.+|+++... .+..++..+|.++...|+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 66 VQDCERAICIDPAYSKAYGRMGLALSS----LNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCccCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 7777766553 445566666666644 33666666666666554 345555566665555443
No 146
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.16 E-value=1.6e-09 Score=81.33 Aligned_cols=110 Identities=21% Similarity=0.283 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHH
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEE 178 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 178 (331)
+.+++.+|.++.. .+++++|+.+|++++.. +++.+++.+|.++...|++++|+.+|++++...+
T Consensus 9 ~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---------- 74 (125)
T 1na0_A 9 AEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---------- 74 (125)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC----------
Confidence 6778888888888 78899999999988875 3778888889888888888888888888887755
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHh
Q 020091 179 AVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYS 239 (331)
Q Consensus 179 A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~ 239 (331)
.++.+++++|.+|.. .+++++|+.+|+++++. .+..++..+|.++.
T Consensus 75 -----------~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 75 -----------NNAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp -----------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred -----------ccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 467788888888876 67888888888888764 56777888887764
No 147
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.16 E-value=1.4e-09 Score=103.93 Aligned_cols=179 Identities=10% Similarity=0.010 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHhc-------CCCHH-------HHHHHHHHHHH-cCCCCCCccCHHHHHHHHH
Q 020091 122 DKALDSFLKGAAR--GSTLAMVDAGLMYWE-------MDKKE-------AAISLYRQAAV-LGDPAAQPANAEEAVKLLY 184 (331)
Q Consensus 122 ~~A~~~~~~A~~~--~~~~a~~~lg~~~~~-------~~~~~-------~A~~~~~~a~~-~~~~~~~~~~~~~A~~~~~ 184 (331)
.+++..|++|+.. .++.+++.+|.++.. .|+.+ +|+..|++|+. ..+
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p---------------- 318 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK---------------- 318 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS----------------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc----------------
Confidence 4788999999876 589999999999985 67766 77777777775 433
Q ss_pred HHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC--CH-HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc
Q 020091 185 QASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YV-RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 261 (331)
Q Consensus 185 ~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~--~~-~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 261 (331)
+++..+..+|.++.. .+++++|...|+++++.. ++ .++..+|.++.. .++.++|...|++|++.
T Consensus 319 -----~~~~l~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 319 -----KNMLLYFAYADYEES----RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR----AEGIKSGRMIFKKARED 385 (530)
T ss_dssp -----SCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTC
T ss_pred -----ccHHHHHHHHHHHHh----cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHH----hcCHHHHHHHHHHHHhc
Confidence 589999999999987 689999999999999874 33 578888888765 44899999999999987
Q ss_pred CC--HHHHHHHHHH-HhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCC
Q 020091 262 GH--GKAQLEHGLG-LFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 329 (331)
Q Consensus 262 ~~--~~a~~~Lg~~-~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~ 329 (331)
.. ...+...+.+ +...|++++|...|+++++..+..+...+..+......++.++|..++++.+...|
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 43 3444454544 34599999999999999987554444444444445667889999999999887644
No 148
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.15 E-value=3.1e-10 Score=86.58 Aligned_cols=93 Identities=19% Similarity=0.096 Sum_probs=68.7
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHH
Q 020091 104 LLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVK 181 (331)
Q Consensus 104 ~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~ 181 (331)
++.+|..+.. .+++++|+..|++++... ++.+++.||.++...|++++|+..|++++.+++
T Consensus 20 ~~~~g~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P------------- 82 (121)
T 1hxi_A 20 PMEEGLSMLK----LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP------------- 82 (121)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------
T ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------
Confidence 4667777777 677778888887777653 777777788777777777777777777777765
Q ss_pred HHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 182 LLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 182 ~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
+++.++++||.+|.. .+++++|+.+|+++++.
T Consensus 83 --------~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 83 --------KDIAVHAALAVSHTN----EHNANAALASLRAWLLS 114 (121)
T ss_dssp --------TCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHC-
T ss_pred --------CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 467777777777765 66777777777777654
No 149
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.14 E-value=5.1e-10 Score=89.47 Aligned_cols=110 Identities=12% Similarity=0.097 Sum_probs=91.7
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--------------------CCHHHHHHHHHHHhcCCCHHHHHHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--------------------GSTLAMVDAGLMYWEMDKKEAAISL 159 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--------------------~~~~a~~~lg~~~~~~~~~~~A~~~ 159 (331)
.+..+..+|..++. .+++++|+.+|.+|+.. .++.+++++|.+|...|++++|+.+
T Consensus 10 ~a~~~~~~G~~~~~----~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~ 85 (162)
T 3rkv_A 10 SVEALRQKGNELFV----QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET 85 (162)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 46778899999999 89999999999999876 2457889999999999999999999
Q ss_pred HHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCH-HHHHHHHH
Q 020091 160 YRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYV-RAMYNTSL 236 (331)
Q Consensus 160 ~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~-~a~~~lg~ 236 (331)
|.+++.+++ +++.+++++|.+|.. .+++++|+.+|+++++. ++. .....|+.
T Consensus 86 ~~~al~~~p---------------------~~~~a~~~~g~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~ 140 (162)
T 3rkv_A 86 SSEVLKREE---------------------TNEKALFRRAKARIA----AWKLDEAEEDLKLLLRNHPAAASVVAREMKI 140 (162)
T ss_dssp HHHHHHHST---------------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhcCC---------------------cchHHHHHHHHHHHH----HhcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 999998876 589999999999987 78899999999999875 344 34555555
Q ss_pred HH
Q 020091 237 CY 238 (331)
Q Consensus 237 ~y 238 (331)
+.
T Consensus 141 ~~ 142 (162)
T 3rkv_A 141 VT 142 (162)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 150
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.13 E-value=4.1e-11 Score=112.83 Aligned_cols=155 Identities=15% Similarity=0.106 Sum_probs=122.2
Q ss_pred CCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHH
Q 020091 118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQ 195 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~ 195 (331)
.+++++|+.+|+++.+. ..+.++.++|.++...+++++|+.+|++|+.+.+...... .+. ..........++
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~-~~~-----~~~~~~~~~~~~ 320 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS-EKE-----SKASESFLLAAF 320 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC-HHH-----HHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC-hHH-----HHHHHHHHHHHH
Confidence 34566788778776654 4778899999999999999999999999999866432111 111 111222346889
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHH
Q 020091 196 YQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHG 271 (331)
Q Consensus 196 ~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg 271 (331)
+++|.+|.. .+++++|+.+|++|++. ++..+++++|.+|.. .+++++|+.+|+++++. .+..++..|+
T Consensus 321 ~nla~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~----~g~~~~A~~~~~~al~l~P~~~~a~~~l~ 392 (457)
T 1kt0_A 321 LNLAMCYLK----LREYTKAVECCDKALGLDSANEKGLYRRGEAQLL----MNEFESAKGDFEKVLEVNPQNKAARLQIS 392 (457)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTC----CHHHHHH
T ss_pred HHHHHHHHH----hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999987 88999999999999875 789999999999976 55999999999999987 4678899999
Q ss_pred HHHhccCCHHHHHHH
Q 020091 272 LGLFTEGEMMKAVVY 286 (331)
Q Consensus 272 ~~~~~~~~~~~A~~~ 286 (331)
.++...+++++|...
T Consensus 393 ~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 393 MCQKKAKEHNERDRR 407 (457)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998887743
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.12 E-value=9.6e-10 Score=90.92 Aligned_cols=112 Identities=16% Similarity=0.143 Sum_probs=99.8
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CH----------------HHHHHHHHHHhcCCCHHHHHHHHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--ST----------------LAMVDAGLMYWEMDKKEAAISLYR 161 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~----------------~a~~~lg~~~~~~~~~~~A~~~~~ 161 (331)
.+..+..+|.++.. .+++++|+.+|++++... ++ .+++++|.+|...+++++|+.+|+
T Consensus 37 ~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 112 (198)
T 2fbn_A 37 SAFDIKEEGNEFFK----KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS 112 (198)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 35678889999999 899999999999999863 44 889999999999999999999999
Q ss_pred HHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHh
Q 020091 162 QAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYS 239 (331)
Q Consensus 162 ~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~ 239 (331)
+++...+ .++.+++++|.+|.. .+++++|+.+|+++++. ++..++..++.++.
T Consensus 113 ~al~~~p---------------------~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 113 KVLKIDK---------------------NNVKALYKLGVANMY----FGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHST---------------------TCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHhCc---------------------ccHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 9998866 589999999999987 88999999999999875 67889999999985
Q ss_pred c
Q 020091 240 F 240 (331)
Q Consensus 240 ~ 240 (331)
.
T Consensus 168 ~ 168 (198)
T 2fbn_A 168 K 168 (198)
T ss_dssp H
T ss_pred H
Confidence 4
No 152
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.12 E-value=1.9e-09 Score=84.54 Aligned_cols=142 Identities=16% Similarity=0.145 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCC
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GS----TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQ 172 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 172 (331)
+.+++.+|.+|.. .+++++|+.+|+++++. ++ ..++.++|.++...|++++|+.+|++++...+..
T Consensus 9 ~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-- 82 (164)
T 3ro3_A 9 GRAFGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL-- 82 (164)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--
Confidence 5678888988888 88999999999988765 32 2477888888888888888888888887652110
Q ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHH
Q 020091 173 PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQAR 252 (331)
Q Consensus 173 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~ 252 (331)
++. .....+++++|.+|.. .+++++|+.+|+++++.. ...+ +.
T Consensus 83 -~~~------------~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~-------------~~~~---~~---- 125 (164)
T 3ro3_A 83 -KDR------------AVEAQSCYSLGNTYTL----LQDYEKAIDYHLKHLAIA-------------QELK---DR---- 125 (164)
T ss_dssp -TCH------------HHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHH-------------HHTT---CH----
T ss_pred -CCc------------HHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHH-------------HHcc---ch----
Confidence 000 0124567788888876 677888888888876420 0000 00
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 253 KWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 253 ~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
.....++..+|.++...|++++|+.+++++++.
T Consensus 126 --------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 126 --------IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp --------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --------HhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 001345566777777777777777777777654
No 153
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.12 E-value=1.1e-08 Score=90.74 Aligned_cols=206 Identities=6% Similarity=-0.137 Sum_probs=168.9
Q ss_pred CCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCCCC---------------Cc---cCH
Q 020091 119 KNLDKALDSFLKGAARG--STLAMVDAGLMYWEMD--KKEAAISLYRQAAVLGDPAA---------------QP---ANA 176 (331)
Q Consensus 119 ~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~--~~~~A~~~~~~a~~~~~~~~---------------~~---~~~ 176 (331)
...++|+..+.+++..+ +..+++..|.++...+ ++++++.++.+++..++... .. .++
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 44568999999999875 9999999999999988 99999999999999987776 12 789
Q ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHC--CCHHHHHHHHHHHhcCCC--ccccH
Q 020091 177 EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQ--EAARWYLRAAEG--GYVRAMYNTSLCYSFGEG--LPLSH 248 (331)
Q Consensus 177 ~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~--~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g--~~~~~ 248 (331)
++++.++.++++. .+..++++-+.++.. .++++ ++++++.++++. .+..|+++.+.++..-.. ....+
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~----l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDT----FDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhH
Confidence 9999999999864 689999999999876 45566 999999999876 689999999999865211 01128
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHH-HHHHHHHHHHcC-----CHHHHHHHHHHHhhhchhcHHHHHHH
Q 020091 249 RQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMK-AVVYLELATRAG-----ETAADHVKNVILQQLSATSRDRAMLV 320 (331)
Q Consensus 249 ~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~-A~~~~~~A~~~~-----~~~a~~~l~~~~~~l~~~~~~~a~~~ 320 (331)
++++.++.+++.. .+..+++.++.++...|+..+ ...+.+++++.+ +..+...++.++.. .++.++|.+.
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~--~~~~~~A~~~ 280 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ--QKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH--TTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc--cCCHHHHHHH
Confidence 9999999999877 678999999999988887444 556777776644 78888888888874 5788899999
Q ss_pred HHhhhc-CCCC
Q 020091 321 VDSWRA-MPSL 330 (331)
Q Consensus 321 ~~~~~~-~~~~ 330 (331)
++.+.+ ..|.
T Consensus 281 ~~~l~~~~Dpi 291 (306)
T 3dra_A 281 YDLLKSKYNPI 291 (306)
T ss_dssp HHHHHHTTCGG
T ss_pred HHHHHhccChH
Confidence 999885 5663
No 154
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.12 E-value=3.1e-09 Score=83.33 Aligned_cols=141 Identities=12% Similarity=-0.000 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 020091 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAAR 217 (331)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~ 217 (331)
.++..+|.++...+++++|+.+|+++++..+.. ++. .....++.++|.+|.. .+++++|+.
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~------------~~~~~~~~~l~~~~~~----~g~~~~A~~ 70 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF---GDK------------AAERIAYSNLGNAYIF----LGEFETASE 70 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCH------------HHHHHHHHHHHHHHHH----TTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh---CCc------------hHHHHHHHHHHHHHHH----cCCHHHHHH
Confidence 345666666666666666666666665442100 000 0012355566666654 556666666
Q ss_pred HHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----
Q 020091 218 WYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRA---- 293 (331)
Q Consensus 218 ~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~---- 293 (331)
+|+++++. ... .+ +. .....++.++|.++...|++++|+.+++++++.
T Consensus 71 ~~~~a~~~------------~~~-~~---~~------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 122 (164)
T 3ro3_A 71 YYKKTLLL------------ARQ-LK---DR------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 122 (164)
T ss_dssp HHHHHHHH------------HHH-TT---CH------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH------------HHH-hC---Cc------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc
Confidence 66666431 000 00 00 001356678888888899999999999888764
Q ss_pred CC----HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcC
Q 020091 294 GE----TAADHVKNVILQQLSATSRDRAMLVVDSWRAM 327 (331)
Q Consensus 294 ~~----~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~ 327 (331)
++ ..+..+++.+ ....++.++|...+++.++.
T Consensus 123 ~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 123 KDRIGEGRACWSLGNA--YTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp TCHHHHHHHHHHHHHH--HHHHTCHHHHHHHHHHHHHH
T ss_pred cchHhHHHHHHHHHHH--HHHccCHHHHHHHHHHHHHH
Confidence 22 2334444444 45667788999888886643
No 155
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.12 E-value=7.1e-10 Score=81.74 Aligned_cols=98 Identities=15% Similarity=0.027 Sum_probs=81.3
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCH
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANA 176 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 176 (331)
.++.+++.+|.++.. .+++++|+.+|+++++.. ++.+++++|.++...+++++|+.+|++++...+
T Consensus 4 ~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-------- 71 (112)
T 2kck_A 4 QNPEEYYLEGVLQYD----AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-------- 71 (112)
T ss_dssp SSTTGGGGHHHHHHS----SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC--------
T ss_pred CcHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc--------
Confidence 456777888888888 889999999999888764 788888899998888888888888888888765
Q ss_pred HHHHHHHHHHHHCC--CHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHHC
Q 020091 177 EEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVD-FNLQEAARWYLRAAEG 225 (331)
Q Consensus 177 ~~A~~~~~~a~~~~--~~~a~~~lg~~y~~G~g~~-~d~~~A~~~~~~A~~~ 225 (331)
. ++.+++++|.+|.. . +++++|+++|++++..
T Consensus 72 -------------~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 72 -------------DEYNKDVWAAKADALRY----IEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp -------------CTTCHHHHHHHHHHHTT----CSSCSHHHHHHHHHHGGG
T ss_pred -------------ccchHHHHHHHHHHHHH----HhCCHHHHHHHHHHHhhc
Confidence 4 67888888888876 7 8888898888888765
No 156
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.10 E-value=4e-09 Score=79.04 Aligned_cols=109 Identities=22% Similarity=0.280 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 020091 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAA 216 (331)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~ 216 (331)
+.+++.+|.++...+++++|+.+|++++...+ +++.+++.+|.+|.. .+++++|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---------------------~~~~~~~~la~~~~~----~~~~~~A~ 63 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---------------------NNAEAWYNLGNAYYK----QGDYDEAI 63 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHH----TTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc---------------------CcHHHHHHHHHHHHH----hCCHHHHH
Confidence 34555555555555555555555555555433 245555555555554 45555555
Q ss_pred HHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 020091 217 RWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGL 274 (331)
Q Consensus 217 ~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~ 274 (331)
.+|+++++. ++..+++.+|.+|.. .+++++|..+|+++... .+..++..+|.++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 64 EYYQKALELDPNNAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 555555443 334444445544433 22444555555444443 2334444444443
No 157
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.10 E-value=3.4e-10 Score=99.45 Aligned_cols=96 Identities=15% Similarity=0.042 Sum_probs=85.6
Q ss_pred HHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHH
Q 020091 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAG 144 (331)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg 144 (331)
.....+...+..|++.+|+..+...++..++ ++.+++++|.+|.. .+++++|+.+|++++... ++.+++++|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPL--VAVYYTNRALCYLK----MQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4455666678899999999999988888654 79999999999999 899999999999999874 899999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCC
Q 020091 145 LMYWEMDKKEAAISLYRQAAVLGD 168 (331)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~~~ 168 (331)
.+|...|++++|+.+|++++.+++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAK 103 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999998754
No 158
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.09 E-value=1.5e-09 Score=82.27 Aligned_cols=113 Identities=13% Similarity=0.192 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHH
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEE 178 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 178 (331)
+.+++.+|.++.. .+++++|+.+|++++... ++.+++++|.++...|++++|+.+|++++...+..
T Consensus 4 ~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------- 71 (131)
T 1elr_A 4 ALKEKELGNDAYK----KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-------- 71 (131)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--------
T ss_pred HHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc--------
Confidence 6778999999999 899999999999999864 88999999999999999999999999998774310
Q ss_pred HHHHHHHHHHCCC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHh
Q 020091 179 AVKLLYQASIAGH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-GYVRAMYNTSLCYS 239 (331)
Q Consensus 179 A~~~~~~a~~~~~----~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~-~~~~a~~~lg~~y~ 239 (331)
..+ +.+++++|.+|.. .+++++|+.+|+++++. .+......++.++.
T Consensus 72 ----------~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 72 ----------REDYRQIAKAYARIGNSYFK----EEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEK 123 (131)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred ----------chhHHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 011 7788999999987 78999999999999876 45777777777763
No 159
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.08 E-value=1.4e-09 Score=86.49 Aligned_cols=102 Identities=14% Similarity=0.018 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC---------CH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---------ST-----LAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~---------~~-----~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (331)
.+..+..+|..++. .+++++|+..|++|+... +. .+++++|.++...|++++|+..|.+|++
T Consensus 10 ~a~~~~~~G~~l~~----~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 10 GAYLALSDAQRQLV----AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 36678889999999 899999999999999764 22 3999999999999999999999999988
Q ss_pred cCCCCCCccCHHHHHHHHHHHH--HCCCHHHH----HHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 166 LGDPAAQPANAEEAVKLLYQAS--IAGHVRAQ----YQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 166 ~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~----~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
+ |.++. +++++.++ +++|.++.. .+++++|+..|++|++.
T Consensus 86 l----------------~n~~~e~~pd~~~A~~~~~~~rG~aL~~----lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 86 Y----------------FNRRGELNQDEGKLWISAVYSRALALDG----LGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp H----------------HHHHCCTTSTHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred h----------------hhccccCCCchHHHHHHHHHhHHHHHHH----CCCHHHHHHHHHHHHhc
Confidence 7 11111 12578888 999999987 89999999999999874
No 160
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.08 E-value=1.5e-09 Score=102.19 Aligned_cols=120 Identities=13% Similarity=0.114 Sum_probs=103.4
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CC---------------HHHHHHHHHHHhcCCCHHHHHHHHHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GS---------------TLAMVDAGLMYWEMDKKEAAISLYRQ 162 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~---------------~~a~~~lg~~~~~~~~~~~A~~~~~~ 162 (331)
++.+++.+|.+|+. .+++++|+.+|++|+.. .+ ..+++++|.+|...+++++|+.+|.+
T Consensus 267 ~a~~~~~~G~~~~~----~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 342 (457)
T 1kt0_A 267 QAAIVKEKGTVYFK----GGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK 342 (457)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 57789999999999 89999999999999975 34 68999999999999999999999999
Q ss_pred HHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhc
Q 020091 163 AAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSF 240 (331)
Q Consensus 163 a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~ 240 (331)
++.+.+ +++.+++++|.+|.. .+++++|+.+|++|++. ++..++..++.++..
T Consensus 343 al~~~p---------------------~~~~a~~~~g~a~~~----~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 397 (457)
T 1kt0_A 343 ALGLDS---------------------ANEKGLYRRGEAQLL----MNEFESAKGDFEKVLEVNPQNKAARLQISMCQKK 397 (457)
T ss_dssp HHHHST---------------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTC----CHHHHHHHHHHH
T ss_pred HHhcCC---------------------ccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999876 589999999999987 88999999999999886 567889999999865
Q ss_pred CCCccccHHHHH
Q 020091 241 GEGLPLSHRQAR 252 (331)
Q Consensus 241 g~g~~~~~~~A~ 252 (331)
.+++.+|.
T Consensus 398 ----~~~~~~a~ 405 (457)
T 1kt0_A 398 ----AKEHNERD 405 (457)
T ss_dssp ----HHHHHHHH
T ss_pred ----HHHHHHHH
Confidence 33555444
No 161
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.07 E-value=1.1e-10 Score=107.63 Aligned_cols=216 Identities=10% Similarity=0.008 Sum_probs=89.6
Q ss_pred CCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHH
Q 020091 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAA 156 (331)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A 156 (331)
..|++++|. .+.+.. +++.+++.||..+.. .+++++|++.|.++ +++.++..++..+...|++++|
T Consensus 15 ~~~~ld~A~----~fae~~---~~~~vWs~La~A~l~----~g~~~eAIdsfika---~D~~~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 15 HIGNLDRAY----EFAERC---NEPAVWSQLAKAQLQ----KGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHH----HHHHhC---CChHHHHHHHHHHHH----cCCHHHHHHHHHcC---CCHHHHHHHHHHHHhCCCHHHH
Confidence 447788884 455553 467899999999999 89999999999775 6788999999999999999999
Q ss_pred HHHHHHHHHcCCCCC----------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC
Q 020091 157 ISLYRQAAVLGDPAA----------QPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG 226 (331)
Q Consensus 157 ~~~~~~a~~~~~~~~----------~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~ 226 (331)
+.+++++.+..++.. ..+++.++..+++. .+..++.++|..+.. .+.+++|+.+|.++
T Consensus 81 i~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~----pn~~a~~~IGd~~~~----~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 81 VKYLQMARKKARESYVETELIFALAKTNRLAELEEFING----PNNAHIQQVGDRCYD----EKMYDAAKLLYNNV---- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTTC----C--------------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC----CcHHHHHHHHHHHHH----cCCHHHHHHHHHHh----
Confidence 999999886432211 56777777777743 455699999999887 78899999999988
Q ss_pred CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020091 227 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVIL 306 (331)
Q Consensus 227 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~ 306 (331)
.-+..|+.++.+ .+++++|.+.|++| +++.++..+..++...|+++.|..+.... ...+.. . ...+.
T Consensus 149 --~n~~~LA~~L~~----Lg~yq~AVea~~KA---~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-~~~ad~-l--~~lv~ 215 (449)
T 1b89_A 149 --SNFGRLASTLVH----LGEYQAAVDGARKA---NSTRTWKEVCFACVDGKEFRLAQMCGLHI-VVHADE-L--EELIN 215 (449)
T ss_dssp --TCHHHHHHHHHT----TTCHHHHHHHHHHH---TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-TTCHHH-H--HHHHH
T ss_pred --hhHHHHHHHHHH----hccHHHHHHHHHHc---CCchhHHHHHHHHHHcCcHHHHHHHHHHH-HhCHhh-H--HHHHH
Confidence 467889999976 55999999999999 68999999999999999999997776642 222222 2 23333
Q ss_pred hhhchhcHHHHHHHHHhhhcCCCCC
Q 020091 307 QQLSATSRDRAMLVVDSWRAMPSLH 331 (331)
Q Consensus 307 ~~l~~~~~~~a~~~~~~~~~~~~~~ 331 (331)
.....+..+++..++++-+...+.|
T Consensus 216 ~Yek~G~~eEai~lLe~aL~le~ah 240 (449)
T 1b89_A 216 YYQDRGYFEELITMLEAALGLERAH 240 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHTTSTTCC
T ss_pred HHHHCCCHHHHHHHHHHHhCCcHHH
Confidence 3456678889999999988887766
No 162
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.07 E-value=2.4e-09 Score=81.55 Aligned_cols=95 Identities=16% Similarity=0.026 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCH
Q 020091 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--ST---LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANA 176 (331)
Q Consensus 102 ~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~---~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 176 (331)
.+++.+|.++.. .+++++|+.+|+++++.. ++ .+++.+|.++...|++++|+.+|++++...+
T Consensus 3 ~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-------- 70 (129)
T 2xev_A 3 RTAYNVAFDALK----NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP-------- 70 (129)
T ss_dssp CCHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------
T ss_pred HHHHHHHHHHHH----hCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC--------
Confidence 346778888887 788888888888887643 44 6788888888888888888888888887765
Q ss_pred HHHHHHHHHHHHCCC---HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 177 EEAVKLLYQASIAGH---VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 177 ~~A~~~~~~a~~~~~---~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
++ +.+++++|.+|.. .+++++|+.+|+++++.
T Consensus 71 -------------~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 71 -------------THDKAAGGLLKLGLSQYG----EGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp -------------TSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred -------------CCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 34 6778888888876 67888888888888764
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.06 E-value=7.3e-09 Score=76.81 Aligned_cols=95 Identities=9% Similarity=0.058 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 020091 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAA 216 (331)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~ 216 (331)
+.+++.+|.++...|++++|+.+|++++...+ +++.+++++|.+|.. .+++++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---------------------~~~~~~~~~a~~~~~----~~~~~~A~ 58 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDP---------------------HNHVLYSNRSAAYAK----KGDYQKAY 58 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHH----HTCHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC---------------------CcHHHHHHHHHHHHh----hccHHHHH
Confidence 34455555555555555555555555554433 245555555555544 44555555
Q ss_pred HHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHH
Q 020091 217 RWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD 260 (331)
Q Consensus 217 ~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 260 (331)
.+|+++++. ++..+++.+|.+|.. .+++++|..+|+++.+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 59 EDGCKTVDLKPDWGKGYSRKAAALEF----LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHH
Confidence 555555442 234444444444433 2244444444444443
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.06 E-value=3.8e-09 Score=81.31 Aligned_cols=100 Identities=21% Similarity=0.088 Sum_probs=89.5
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCH
Q 020091 189 AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHG 264 (331)
Q Consensus 189 ~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~ 264 (331)
...+.+++.+|.++.. .+++++|+.+|++++.. .++.+++++|.+|.. .+++++|+.+|++++.. +++
T Consensus 6 ~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~ 77 (137)
T 3q49_B 6 SPSAQELKEQGNRLFV----GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK----MQQPEQALADCRRALELDGQSV 77 (137)
T ss_dssp CCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCH
T ss_pred cccHHHHHHHHHHHHH----hCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCchhH
Confidence 3578999999999987 88999999999999875 678999999999976 55999999999999887 568
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCH
Q 020091 265 KAQLEHGLGLFTEGEMMKAVVYLELATRAGET 296 (331)
Q Consensus 265 ~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~ 296 (331)
.+++.+|.++...|++++|+.+|+++++..+.
T Consensus 78 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 78 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 89999999999999999999999999986543
No 165
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.04 E-value=7.9e-10 Score=99.81 Aligned_cols=31 Identities=16% Similarity=0.078 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG 135 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~ 135 (331)
+..++.+|.+++. .+++++|+.+|++|+...
T Consensus 179 a~~~~~~g~~~~~----~g~~~~A~~~y~~Al~~~ 209 (338)
T 2if4_A 179 ADRRKMDGNSLFK----EEKLEEAMQQYEMAIAYM 209 (338)
T ss_dssp HHHHHHHHHHTCS----SSCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHh
Confidence 5567777777777 778888888888777654
No 166
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.04 E-value=3.2e-09 Score=97.09 Aligned_cols=111 Identities=14% Similarity=0.046 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh----------------C--CCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA----------------R--GSTLAMVDAGLMYWEMDKKEAAISLYRQ 162 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~----------------~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 162 (331)
+..+..+|..+.. .+++++|+.+|++|++ . .++.+++++|.+|...+++++|+.+|++
T Consensus 223 a~~~~~~g~~~~~----~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 298 (370)
T 1ihg_A 223 SEDLKNIGNTFFK----SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE 298 (370)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 5668888999988 8999999999999887 2 2556778888888888888888888888
Q ss_pred HHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhc
Q 020091 163 AAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSF 240 (331)
Q Consensus 163 a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~ 240 (331)
++++.+ +++.+++++|.+|.. .+++++|+.+|++|++. ++..+...++.++..
T Consensus 299 al~~~p---------------------~~~~a~~~lg~~~~~----~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~ 353 (370)
T 1ihg_A 299 ALEIDP---------------------SNTKALYRRAQGWQG----LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK 353 (370)
T ss_dssp HHTTCT---------------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhCc---------------------hhHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 887765 477888888888876 67788888888888664 566677777777643
No 167
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.04 E-value=3.8e-09 Score=84.35 Aligned_cols=100 Identities=21% Similarity=0.087 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHhcCCCccccHHH
Q 020091 191 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--------------------GYVRAMYNTSLCYSFGEGLPLSHRQ 250 (331)
Q Consensus 191 ~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--------------------~~~~a~~~lg~~y~~g~g~~~~~~~ 250 (331)
.+.++..+|..+.. .+++++|+.+|++|+.. ....+++++|.+|.. .+++++
T Consensus 10 ~a~~~~~~G~~~~~----~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----~~~~~~ 81 (162)
T 3rkv_A 10 SVEALRQKGNELFV----QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN----IGDLHE 81 (162)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH----HTCHHH
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh----cCcHHH
Confidence 46778899999987 78999999999999764 345789999999977 569999
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHH
Q 020091 251 ARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA 298 (331)
Q Consensus 251 A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a 298 (331)
|+.++.+++.. .++.+++.+|.+|...|++++|+.+|+++++..+.+.
T Consensus 82 A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 82 AEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 99999999987 5789999999999999999999999999999876543
No 168
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.02 E-value=1.8e-09 Score=82.28 Aligned_cols=95 Identities=14% Similarity=-0.042 Sum_probs=80.5
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHH
Q 020091 194 AQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLE 269 (331)
Q Consensus 194 a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~ 269 (331)
.++.+|..+.. .+++++|+..|+++++. +++.+++.+|.++.. .+++++|+.+|+++++. ++..+++.
T Consensus 19 ~~~~~g~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~~~~~ 90 (121)
T 1hxi_A 19 NPMEEGLSMLK----LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE----NEKDGLAIIALNHARMLDPKDIAVHAA 90 (121)
T ss_dssp CHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 46788988876 78899999999999875 789999999999976 45999999999999887 56889999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCH
Q 020091 270 HGLGLFTEGEMMKAVVYLELATRAGET 296 (331)
Q Consensus 270 Lg~~~~~~~~~~~A~~~~~~A~~~~~~ 296 (331)
||.+|...|++++|+.+|+++++..+.
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 91 LAVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 999999999999999999999877654
No 169
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.01 E-value=1.1e-10 Score=110.47 Aligned_cols=121 Identities=17% Similarity=0.100 Sum_probs=92.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 020091 139 AMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARW 218 (331)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~ 218 (331)
+++++|.++...|++++|+.+|+++++..+ .++.+++++|.+|.. .+++++|+.+
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p---------------------~~~~~~~~lg~~~~~----~g~~~~A~~~ 62 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNP---------------------SNAIYYGNRSLAYLR----TECYGYALGD 62 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCC---------------------ccHHHHHHHHHHHHH----hcCHHHHHHH
Confidence 445566677777777777777777777655 478888899998887 7889999999
Q ss_pred HHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHH--HhccCCHHHHHHHHH
Q 020091 219 YLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLG--LFTEGEMMKAVVYLE 288 (331)
Q Consensus 219 ~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~--~~~~~~~~~A~~~~~ 288 (331)
|++|++. +++.+++++|.+|.. .+++++|+.+|+++++. ++..++..++.+ +...|++++|+..++
T Consensus 63 ~~~al~l~p~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 63 ATRAIELDKKYIKGYYRRAASNMA----LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999876 578888899998876 55899999999998876 456778888887 788899999999998
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.00 E-value=1.3e-08 Score=76.96 Aligned_cols=110 Identities=15% Similarity=0.098 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CC----
Q 020091 192 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GH---- 263 (331)
Q Consensus 192 ~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~---- 263 (331)
+.+++.+|.++.. .+++++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|++++.. .+
T Consensus 4 ~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 75 (131)
T 1elr_A 4 ALKEKELGNDAYK----KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE----KGDYNKCRELCEKAIEVGRENREDY 75 (131)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhccccchhH
Confidence 5678899999987 78999999999999875 578899999999976 55999999999999876 23
Q ss_pred ---HHHHHHHHHHHhccCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhhh
Q 020091 264 ---GKAQLEHGLGLFTEGEMMKAVVYLELATRAG-ETAADHVKNVILQQL 309 (331)
Q Consensus 264 ---~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~-~~~a~~~l~~~~~~l 309 (331)
..+++.+|.++...|++++|+.+|+++++.. +......+..+...+
T Consensus 76 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 7788999999999999999999999999875 455555555554433
No 171
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.99 E-value=6.4e-08 Score=86.56 Aligned_cols=222 Identities=9% Similarity=-0.075 Sum_probs=132.9
Q ss_pred ccCCchHH-HhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCC----------HHHHHHHHHHHHhCC--CHHHHH
Q 020091 75 SFTLPQLR-AASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKN----------LDKALDSFLKGAARG--STLAMV 141 (331)
Q Consensus 75 ~~~~~~~~-~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~----------~~~A~~~~~~A~~~~--~~~a~~ 141 (331)
....|.+. +|+..+...+...|+ +..+++.-+.+... .++ +++++.++..++..+ +..+++
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP~--~ytaWn~Rr~iL~~----l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~ 112 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANPD--FATLWNCRREVLQH----LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWH 112 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCTT--CHHHHHHHHHHHHH----HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCch--hHHHHHHHHHHHHH----hcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 33455554 777777777776554 77888888887765 222 678999999888764 889999
Q ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHcCCCCC-----------CccC-HHHHHHHHHHHHHC--CCHHHHHHHHHHHhcC
Q 020091 142 DAGLMYWEMD--KKEAAISLYRQAAVLGDPAA-----------QPAN-AEEAVKLLYQASIA--GHVRAQYQLALCLHRG 205 (331)
Q Consensus 142 ~lg~~~~~~~--~~~~A~~~~~~a~~~~~~~~-----------~~~~-~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G 205 (331)
.-+.++...+ ++++++.++.++++.++.+. ..+. +++++.++.++++. .+..|+++.+.++..-
T Consensus 113 hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 113 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 9999998877 48899999999998876543 1222 45566666665543 4566666666555431
Q ss_pred CCC----------CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCcc-------ccHHHHHHHHHHHHHcCCHHH
Q 020091 206 RGV----------DFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLP-------LSHRQARKWMKRAADCGHGKA 266 (331)
Q Consensus 206 ~g~----------~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~-------~~~~~A~~~~~~a~~~~~~~a 266 (331)
... .+.++++++++.+++.. ++..+++.+..++..+.|.. .-+++++.++.+..+......
T Consensus 193 ~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~ 272 (331)
T 3dss_A 193 HPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENK 272 (331)
T ss_dssp SCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred hhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccc
Confidence 000 02355666666666542 55666665555555544321 234566666666655533323
Q ss_pred HHHHHHHHh-----ccCCHHHHHHHHHHHHHcCCHHHHHHH
Q 020091 267 QLEHGLGLF-----TEGEMMKAVVYLELATRAGETAADHVK 302 (331)
Q Consensus 267 ~~~Lg~~~~-----~~~~~~~A~~~~~~A~~~~~~~a~~~l 302 (331)
+..++.++. ..+..++...++.+.++.++....+..
T Consensus 273 w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~ 313 (331)
T 3dss_A 273 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 313 (331)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHH
Confidence 333222221 244555666666666666665554443
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=2.4e-08 Score=77.41 Aligned_cols=109 Identities=17% Similarity=0.025 Sum_probs=93.2
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--C
Q 020091 190 GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY-----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--G 262 (331)
Q Consensus 190 ~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~-----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~ 262 (331)
..+..++.+|..+.. .+++++|+.+|+++++... ..+++++|.+|.. .+++++|+.+|++++.. .
T Consensus 26 ~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~ 97 (148)
T 2dba_A 26 SSVEQLRKEGNELFK----CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK----LEDYDKAETEASKAIEKDGG 97 (148)
T ss_dssp CCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH----HccHHHHHHHHHHHHhhCcc
Confidence 578899999999987 7899999999999998743 7889999999976 55999999999999876 5
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CHHHHHHHHHHH
Q 020091 263 HGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAADHVKNVIL 306 (331)
Q Consensus 263 ~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~--~~~a~~~l~~~~ 306 (331)
+..+++.+|.++...|++++|+.+|+++++.. +..+...+..+.
T Consensus 98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 68899999999999999999999999999875 455555554443
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.97 E-value=3.6e-10 Score=106.92 Aligned_cols=123 Identities=14% Similarity=0.058 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHH
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEE 178 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 178 (331)
+.+++.+|.++.. .+++++|+.+|++|++.. ++.+++++|.+|...+++++|+.+|++++++.+
T Consensus 6 a~~~~~lg~~~~~----~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p---------- 71 (477)
T 1wao_1 6 AEELKTQANDYFK----AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK---------- 71 (477)
T ss_dssp HTTSSSSSSSTTT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT----------
T ss_pred HHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC----------
Confidence 4455667777777 899999999999998764 788999999999999999999999999998866
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH--HhcCCCccccHHHHHHH
Q 020091 179 AVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLC--YSFGEGLPLSHRQARKW 254 (331)
Q Consensus 179 A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~--y~~g~g~~~~~~~A~~~ 254 (331)
+++.+++++|.+|.. .+++++|+.+|+++++. ++..++.+++.+ +.. .+++++|+..
T Consensus 72 -----------~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~----~g~~~~A~~~ 132 (477)
T 1wao_1 72 -----------KYIKGYYRRAASNMA----LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK----QKAFERAIAG 132 (477)
T ss_dssp -----------TCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHH----HHHHCCC---
T ss_pred -----------CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH----HHHHHHHhcc
Confidence 578899999999987 78899999999999775 567788888887 543 4588888888
Q ss_pred HH
Q 020091 255 MK 256 (331)
Q Consensus 255 ~~ 256 (331)
++
T Consensus 133 ~~ 134 (477)
T 1wao_1 133 DE 134 (477)
T ss_dssp --
T ss_pred cc
Confidence 88
No 174
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.97 E-value=3.4e-09 Score=77.97 Aligned_cols=99 Identities=9% Similarity=-0.070 Sum_probs=85.0
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--C--
Q 020091 189 AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--G-- 262 (331)
Q Consensus 189 ~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~-- 262 (331)
++++.+++.+|.++.. .+++++|+.+|+++++. .+..+++++|.+|.. .+++++|+.+|++++.. .
T Consensus 3 p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~~~~ 74 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYD----AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN----LERYEEAVDCYNYVINVIEDEY 74 (112)
T ss_dssp CSSTTGGGGHHHHHHS----SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSCCTT
T ss_pred CCcHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCcccc
Confidence 3567788899999987 78999999999999875 578889999999976 45899999999999887 4
Q ss_pred CHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHcCC
Q 020091 263 HGKAQLEHGLGLFTE-GEMMKAVVYLELATRAGE 295 (331)
Q Consensus 263 ~~~a~~~Lg~~~~~~-~~~~~A~~~~~~A~~~~~ 295 (331)
+..+++.+|.++... |++++|+.++++++...+
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 75 NKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp CHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 678889999999999 999999999999987654
No 175
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.97 E-value=3.4e-09 Score=84.27 Aligned_cols=98 Identities=17% Similarity=-0.052 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--C-------CHH-----HHHHHHHHHhcCCCccccHHHHHHHHH
Q 020091 191 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--G-------YVR-----AMYNTSLCYSFGEGLPLSHRQARKWMK 256 (331)
Q Consensus 191 ~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~-------~~~-----a~~~lg~~y~~g~g~~~~~~~A~~~~~ 256 (331)
.+..+.++|..+.. .+++++|+.+|++|++. . +.. ++.++|.++.. .+++++|+.+|.
T Consensus 10 ~a~~~~~~G~~l~~----~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~----Lgr~~eAl~~~~ 81 (159)
T 2hr2_A 10 GAYLALSDAQRQLV----AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG----LRSFDEALHSAD 81 (159)
T ss_dssp HHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHH----CCCHHHHHHHHH
Confidence 35667899999886 78999999999999875 3 333 89999999976 459999999999
Q ss_pred HHHHc-------C--CHHHH----HHHHHHHhccCCHHHHHHHHHHHHHcCCH
Q 020091 257 RAADC-------G--HGKAQ----LEHGLGLFTEGEMMKAVVYLELATRAGET 296 (331)
Q Consensus 257 ~a~~~-------~--~~~a~----~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~ 296 (331)
+|++. . +..++ +++|.++...|++++|+..|++|++..+.
T Consensus 82 kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 82 KALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp HHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99987 4 56788 99999999999999999999999987554
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.96 E-value=6.7e-09 Score=79.00 Aligned_cols=96 Identities=20% Similarity=0.220 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCH---HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CC-
Q 020091 192 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYV---RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GH- 263 (331)
Q Consensus 192 ~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~---~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~- 263 (331)
+.+++.+|.++.. .+++++|+.+|+++++. ++. .+++.+|.+|.. .+++++|+.+|++++.. ++
T Consensus 2 ~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~~~~~~p~~~ 73 (129)
T 2xev_A 2 ARTAYNVAFDALK----NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYA----TRNFQLAEAQFRDLVSRYPTHD 73 (129)
T ss_dssp -CCHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTST
T ss_pred cHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHCCCCc
Confidence 3467899999987 78999999999999874 455 799999999976 55999999999999886 45
Q ss_pred --HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 020091 264 --GKAQLEHGLGLFTEGEMMKAVVYLELATRAGE 295 (331)
Q Consensus 264 --~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~ 295 (331)
+.+++.+|.++...|++++|+.+|+++++..+
T Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 78899999999999999999999999998754
No 177
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.96 E-value=4e-08 Score=86.80 Aligned_cols=177 Identities=5% Similarity=-0.099 Sum_probs=109.7
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 020091 124 ALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALC 201 (331)
Q Consensus 124 A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 201 (331)
|+.+|++.+.. ....+.+.+|.++...|++++|+.++.+.+..++. .++.+++..++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~-------------------~~~lea~~l~vqi 145 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEA-------------------EGTTELLLLAIEV 145 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCS-------------------TTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-------------------cCcHHHHHHHHHH
Confidence 56666666554 35566677888887778888777777777665531 1367777777777
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHCCC------HHHHHHHH--HHHhc-CCCccccHHHHHHHHHHHHHcCCH--HHHHHH
Q 020091 202 LHRGRGVDFNLQEAARWYLRAAEGGY------VRAMYNTS--LCYSF-GEGLPLSHRQARKWMKRAADCGHG--KAQLEH 270 (331)
Q Consensus 202 y~~G~g~~~d~~~A~~~~~~A~~~~~------~~a~~~lg--~~y~~-g~g~~~~~~~A~~~~~~a~~~~~~--~a~~~L 270 (331)
|.. .++.+.|.+.+++..+... -.....|+ ++... |. .++.+|+..|++..+.... .....+
T Consensus 146 ~L~----~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~---~~~q~A~~~f~El~~~~p~~~~~~lLl 218 (310)
T 3mv2_B 146 ALL----NNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNK---ETATSNFYYYEELSQTFPTWKTQLGLL 218 (310)
T ss_dssp HHH----TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTC---STTTHHHHHHHHHHTTSCSHHHHHHHH
T ss_pred HHH----CCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHhCCCcccHHHHH
Confidence 776 6778888888887765543 33344444 22322 22 2678888888887665321 222223
Q ss_pred HHHHhccCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCCC
Q 020091 271 GLGLFTEGEMMKAVVYLELATR------------AGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 331 (331)
Q Consensus 271 g~~~~~~~~~~~A~~~~~~A~~------------~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~~ 331 (331)
. ++..+|++++|...++.+.+ .+++++..|+..+...+ ++ ++.+++++++..+|+|
T Consensus 219 n-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~l--gk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 219 N-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQ--GL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp H-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHT--TC--TTHHHHHHHHHTTCCC
T ss_pred H-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHh--Ch--HHHHHHHHHHHhCCCC
Confidence 3 67778888888888875543 22333333333233333 33 6677788888888876
No 178
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.96 E-value=5.2e-09 Score=95.66 Aligned_cols=134 Identities=15% Similarity=0.037 Sum_probs=84.8
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHH--HHCCCHHHHHHHHHHHhcCCCCCCCHH
Q 020091 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQA--SIAGHVRAQYQLALCLHRGRGVDFNLQ 213 (331)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a--~~~~~~~a~~~lg~~y~~G~g~~~d~~ 213 (331)
.+.++..+|..+...+++++|+..|++++...+.. . ........ .+..++.+++++|.+|.. .++++
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~nla~~~~~----~g~~~ 290 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS-----R--AAAEDADGAKLQPVALSCVLNIGACKLK----MSDWQ 290 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----H--HHSCHHHHGGGHHHHHHHHHHHHHHHHH----TTCHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC-----c--cccChHHHHHHHHHHHHHHHHHHHHHHh----ccCHH
Confidence 35668899999999999999999999998742100 0 00001111 122456677778877776 67777
Q ss_pred HHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHH
Q 020091 214 EAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAV 284 (331)
Q Consensus 214 ~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~ 284 (331)
+|+.+|++|++. +++.+++.+|.+|.. .+++++|+.+|++|++. ++..++..|+.++...++.+++.
T Consensus 291 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 291 GAVDSCLEALEIDPSNTKALYRRAQGWQG----LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777764 456666666666654 33666666666666655 34555566666655555555443
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.95 E-value=2.7e-09 Score=80.49 Aligned_cols=88 Identities=11% Similarity=0.038 Sum_probs=71.5
Q ss_pred CCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCH
Q 020091 118 RKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHV 192 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 192 (331)
.+++++|+.+|+++++.+ ++.++++||.+|...|++++|+.+|+++++..+ +++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---------------------~~~ 61 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP---------------------NHQ 61 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------------TCH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------Cch
Confidence 678899999999999873 557889999999999999999999999998876 578
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHH
Q 020091 193 RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRA 230 (331)
Q Consensus 193 ~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a 230 (331)
.+++++|.+|.. .+++++|+.+|+++++. +++..
T Consensus 62 ~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 62 ALRVFYAMVLYN----LGRYEQGVELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHH
Confidence 999999999987 78899999999999765 44444
No 180
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.95 E-value=2.5e-09 Score=96.56 Aligned_cols=132 Identities=14% Similarity=-0.015 Sum_probs=78.3
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCH-------------------HHHHHHHHHHhcCCCccccHHHH
Q 020091 191 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYV-------------------RAMYNTSLCYSFGEGLPLSHRQA 251 (331)
Q Consensus 191 ~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~-------------------~a~~~lg~~y~~g~g~~~~~~~A 251 (331)
.+.+++++|..+.. .+++++|+.+|++|+..... .+++++|.+|.. .+++++|
T Consensus 178 ~a~~~~~~g~~~~~----~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~----~g~~~~A 249 (338)
T 2if4_A 178 AADRRKMDGNSLFK----EEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIK----LKRYDEA 249 (338)
T ss_dssp HHHHHHHHHHHTCS----SSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHT----TTCCHHH
T ss_pred HHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHH----cCCHHHH
Confidence 35667788888876 77888888888888775432 378899999976 4599999
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcC
Q 020091 252 RKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAADHVKNVILQQLSATSRDRAMLVVDSWRAM 327 (331)
Q Consensus 252 ~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~--~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~ 327 (331)
+.+|++++.. .+..+++++|.+|...|++++|+.+|+++++.. +..+..++..+... .....+++...++++...
T Consensus 250 ~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~-~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 250 IGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ-EKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCC
Confidence 9999999887 568899999999999999999999999997664 45555566555433 344556777788887777
Q ss_pred CCCC
Q 020091 328 PSLH 331 (331)
Q Consensus 328 ~~~~ 331 (331)
.|.|
T Consensus 329 ~p~~ 332 (338)
T 2if4_A 329 KDEG 332 (338)
T ss_dssp ----
T ss_pred CCCC
Confidence 7654
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.86 E-value=1.8e-09 Score=81.38 Aligned_cols=89 Identities=13% Similarity=0.036 Sum_probs=72.4
Q ss_pred CchHHHhHHHHHHHHHHhC-CCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHH
Q 020091 78 LPQLRAASLVCKSWNDALR-PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKE 154 (331)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~-~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~ 154 (331)
.|++++|+..+.+.++... +..++.+++.||.+|.. .+++++|+.+|+++++.. ++.+++++|.++...|+++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT----LGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHH
Confidence 4677888777776665410 12467899999999999 899999999999999874 8999999999999999999
Q ss_pred HHHHHHHHHHHcCCCC
Q 020091 155 AAISLYRQAAVLGDPA 170 (331)
Q Consensus 155 ~A~~~~~~a~~~~~~~ 170 (331)
+|+.+|++++...+..
T Consensus 79 ~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 79 QGVELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhCCCc
Confidence 9999999999886643
No 182
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.83 E-value=2.6e-07 Score=85.18 Aligned_cols=198 Identities=10% Similarity=-0.046 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-------------------CHHHHHHHHHHHhcCCCHHHHHHHHH
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-------------------STLAMVDAGLMYWEMDKKEAAISLYR 161 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-------------------~~~a~~~lg~~~~~~~~~~~A~~~~~ 161 (331)
|.+...-|.-+.. .+++++|++.|.++++.. ...++.+||.+|...|++++|+.+|.
T Consensus 4 p~~~l~~a~~l~~----~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~ 79 (434)
T 4b4t_Q 4 PGSKLEEARRLVN----EKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIP 79 (434)
T ss_dssp TTHHHHHHHHHHH----HTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4445555666666 799999999999998752 12468899999999999999999999
Q ss_pred HHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--------CCHHHHHH
Q 020091 162 QAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--------GYVRAMYN 233 (331)
Q Consensus 162 ~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--------~~~~a~~~ 233 (331)
++...-.... ++ .....+..++|.++.. .+++++|+.++++++.. .......+
T Consensus 80 ~~~~~~~~~~------~~---------~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (434)
T 4b4t_Q 80 HSTEYMMQFA------KS---------KTVKVLKTLIEKFEQV----PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIK 140 (434)
T ss_dssp HTHHHHHTSC------HH---------HHHHHHHHHHHHHCSC----CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHH
T ss_pred HHHHHHHHcc------ch---------HHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 8876422100 00 0012345678888865 78999999999999752 23678899
Q ss_pred HHHHHhcCCCccccHHHHHHHHHHHHHc----C----CHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----C-CH--HH
Q 020091 234 TSLCYSFGEGLPLSHRQARKWMKRAADC----G----HGKAQLEHGLGLFTEGEMMKAVVYLELATRA----G-ET--AA 298 (331)
Q Consensus 234 lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~----~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~----~-~~--~a 298 (331)
||.+|.. .+++.+|..++.++... + ...++..+|.+|...|++++|..+|+++... . +. .+
T Consensus 141 la~~~~~----~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 141 LATLHYQ----KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHH----HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHH----ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 9999976 55999999999998753 1 1467789999999999999999999999764 2 21 24
Q ss_pred HHHHHHHHhhhchhcHHHHHHHHHhhh
Q 020091 299 DHVKNVILQQLSATSRDRAMLVVDSWR 325 (331)
Q Consensus 299 ~~~l~~~~~~l~~~~~~~a~~~~~~~~ 325 (331)
......+......++..+|...+.+..
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 444445555667778888877766654
No 183
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.79 E-value=3.9e-09 Score=77.98 Aligned_cols=86 Identities=12% Similarity=0.120 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
++.+++.+|.++.. .+++++|+.+|++++... ++.+++++|.++...|++++|+.+|++++.+.+... +..
T Consensus 3 ~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 75 (111)
T 2l6j_A 3 QFEKQKEQGNSLFK----QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAE---HVA 75 (111)
T ss_dssp HHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTT---SHH
T ss_pred hHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcc---HHH
Confidence 46789999999999 899999999999999864 899999999999999999999999999999876310 000
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhc
Q 020091 178 EAVKLLYQASIAGHVRAQYQLALCLHR 204 (331)
Q Consensus 178 ~A~~~~~~a~~~~~~~a~~~lg~~y~~ 204 (331)
....+++.+|.++..
T Consensus 76 ------------~~~~~~~~~~~~~~~ 90 (111)
T 2l6j_A 76 ------------IRSKLQYRLELAQGA 90 (111)
T ss_dssp ------------HHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHH
Confidence 016778888888764
No 184
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.79 E-value=1.4e-08 Score=80.62 Aligned_cols=99 Identities=14% Similarity=0.125 Sum_probs=79.9
Q ss_pred chHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCC----------HHHHHHHHHHHHhCC--CHHHHHHHHHH
Q 020091 79 PQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKN----------LDKALDSFLKGAARG--STLAMVDAGLM 146 (331)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~----------~~~A~~~~~~A~~~~--~~~a~~~lg~~ 146 (331)
+.+++|...+...++..|+ ++.+++++|.++.. .++ +++|+..|++|++.+ +++++++||.+
T Consensus 16 ~~feeA~~~~~~Ai~l~P~--~aea~~n~G~~l~~----l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL--DADNLTRWGGVLLE----LSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHH----hcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 3478888888888887664 89999999999987 544 569999999999886 99999999999
Q ss_pred HhcC-----------CCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHH
Q 020091 147 YWEM-----------DKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQA 186 (331)
Q Consensus 147 ~~~~-----------~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a 186 (331)
|... +++++|+.+|++|+++++. ...+.++++...++
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~---~~~y~~al~~~~ka 137 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD---NTHYLKSLEMTAKA 137 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHTH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHhC
Confidence 9876 4899999999999999874 33455555554444
No 185
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.79 E-value=2.3e-06 Score=76.42 Aligned_cols=179 Identities=8% Similarity=-0.079 Sum_probs=137.5
Q ss_pred HHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCC--CHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCC-HHH
Q 020091 81 LRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRK--NLDKALDSFLKGAARG--STLAMVDAGLMYWEMDK-KEA 155 (331)
Q Consensus 81 ~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~--~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~-~~~ 155 (331)
+.+++..+...+...| .+..+++.-+.+... .+ ++++++.++.++++.. +..|+...+.++...+. .++
T Consensus 90 l~~EL~~~~~~L~~~P--Kny~aW~hR~wlL~~----l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~e 163 (331)
T 3dss_A 90 VKAELGFLESCLRVNP--KSYGTWHHRCWLLSR----LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAE 163 (331)
T ss_dssp HHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHhCC--CCHHHHHHHHHHHhc----cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHH
Confidence 5677777777777655 489999999998887 34 6999999999999875 99999999999999888 699
Q ss_pred HHHHHHHHHHcCCCCC-----------Cc--------------cCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCC
Q 020091 156 AISLYRQAAVLGDPAA-----------QP--------------ANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGV 208 (331)
Q Consensus 156 A~~~~~~a~~~~~~~~-----------~~--------------~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~ 208 (331)
++.++.++++.++.+. .. +.+++++.++.+++. +++..+++.+..++..+.|.
T Consensus 164 el~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 164 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCc
Confidence 9999999999877665 11 458899999999975 68999999888888776542
Q ss_pred C-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHh-cCCCccccHHHHHHHHHHHHHcCCHH
Q 020091 209 D-------FNLQEAARWYLRAAEGGYVRAMYNTSLCYS-FGEGLPLSHRQARKWMKRAADCGHGK 265 (331)
Q Consensus 209 ~-------~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~-~g~g~~~~~~~A~~~~~~a~~~~~~~ 265 (331)
. +-++++++++.+.++...-..+..++.+.. .+.......++...|+.+..+.++..
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r 308 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 308 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGG
T ss_pred cccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcch
Confidence 2 347899999999987644334444444432 11111346789999999998887643
No 186
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.79 E-value=1.9e-08 Score=79.83 Aligned_cols=88 Identities=10% Similarity=0.101 Sum_probs=69.3
Q ss_pred CCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCH----------HHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHH
Q 020091 119 KNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKK----------EAAISLYRQAAVLGDPAAQPANAEEAVKLLYQA 186 (331)
Q Consensus 119 ~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a 186 (331)
+.+++|+..|++++..+ ++++++++|.++...+++ ++|+..|++|+++++
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP------------------ 77 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP------------------ 77 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT------------------
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc------------------
Confidence 45889999999999875 999999999999987665 466666666666655
Q ss_pred HHCCCHHHHHHHHHHHhc-CCCC------CCCHHHHHHHHHHHHHCCC
Q 020091 187 SIAGHVRAQYQLALCLHR-GRGV------DFNLQEAARWYLRAAEGGY 227 (331)
Q Consensus 187 ~~~~~~~a~~~lg~~y~~-G~g~------~~d~~~A~~~~~~A~~~~~ 227 (331)
++++++++||.+|.. |.-+ .+++++|+.+|++|++.+.
T Consensus 78 ---~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 78 ---KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ---CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 689999999999975 2101 1479999999999987643
No 187
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.79 E-value=4e-07 Score=81.82 Aligned_cols=216 Identities=9% Similarity=-0.117 Sum_probs=152.8
Q ss_pred hHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcC-C-CHH
Q 020091 80 QLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRK-NLDKALDSFLKGAARG--STLAMVDAGLMYWEM-D-KKE 154 (331)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~-~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~-~-~~~ 154 (331)
...+|+..+...+...|+ +..+++.-|.+... .+ ++++++.++.+++..+ +..+++..+.++... + +++
T Consensus 69 ~se~AL~lt~~~L~~nP~--~ytaWn~R~~iL~~----l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPA--HYTVWQYRFSLLTS----LNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp CSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCH
T ss_pred CCHHHHHHHHHHHHhCch--hHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChH
Confidence 345888888888888765 78999999999988 45 6999999999999875 999999999999887 7 899
Q ss_pred HHHHHHHHHHHcCCCCC-----------CccC--------HHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCC---CCC
Q 020091 155 AAISLYRQAAVLGDPAA-----------QPAN--------AEEAVKLLYQASIA--GHVRAQYQLALCLHRGRG---VDF 210 (331)
Q Consensus 155 ~A~~~~~~a~~~~~~~~-----------~~~~--------~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g---~~~ 210 (331)
+++.++.++++.++.+. ..+. ..+++.++.++++. .+..|+++.+.++..-.+ ...
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchH
Confidence 99999999998876654 1122 34888888888764 688889888888865110 011
Q ss_pred CHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccc----------------cHHHHHHHHHHHHH--------cCCH
Q 020091 211 NLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPL----------------SHRQARKWMKRAAD--------CGHG 264 (331)
Q Consensus 211 d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~----------------~~~~A~~~~~~a~~--------~~~~ 264 (331)
.++++++++.+++.. ++..+++++..++........ ....-......... ...+
T Consensus 223 ~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 267888999888764 788888888877755321100 11111111111111 1345
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHH-cCCHHHHHH
Q 020091 265 KAQLEHGLGLFTEGEMMKAVVYLELATR-AGETAADHV 301 (331)
Q Consensus 265 ~a~~~Lg~~~~~~~~~~~A~~~~~~A~~-~~~~~a~~~ 301 (331)
-+..-|+.+|...++.++|...|+..++ .++....++
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw 340 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYW 340 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHH
Confidence 6777888888888888899998888874 455554443
No 188
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.76 E-value=4e-07 Score=87.75 Aligned_cols=170 Identities=7% Similarity=-0.139 Sum_probs=115.5
Q ss_pred HHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCC----------HHHHHHHHHHHHhCC--CHHHHHHHHHHHhc
Q 020091 82 RAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKN----------LDKALDSFLKGAARG--STLAMVDAGLMYWE 149 (331)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~----------~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~ 149 (331)
++|+..+...++.-|+ +..+++.-|.++.. .++ +++++.++.+++... +..++++.+.++..
T Consensus 46 eeal~~~~~~l~~nP~--~~taW~~R~~~l~~----l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 46 ESVLELTSQILGANPD--FATLWNCRREVLQH----LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp HHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----HHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCch--hHHHHHHHHHHHHh----cccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3666667767666554 67777777777766 444 777777777777664 77777777777777
Q ss_pred CC--CHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHC-
Q 020091 150 MD--KKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDF-NLQEAARWYLRAAEG- 225 (331)
Q Consensus 150 ~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~-d~~~A~~~~~~A~~~- 225 (331)
.+ ++++++.++.++++.++ .+..|+++.|.++.. .+ .++++++++.++++.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~---------------------~N~~aW~~R~~~l~~----l~~~~~~el~~~~~~I~~~ 174 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADE---------------------RNFHCWDYRRFVAAQ----AAVAPAEELAFTDSLITRN 174 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHH----TCCCHHHHHHHHHTTTTTT
T ss_pred cccccHHHHHHHHHHHHhhcc---------------------ccccHHHHHHHHHHH----cCCChHHHHHHHHHHHHHC
Confidence 76 55777777777777655 477777777777765 33 677788888887765
Q ss_pred -CCHHHHHHHHHHHhcCCC----------ccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHH
Q 020091 226 -GYVRAMYNTSLCYSFGEG----------LPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMK 282 (331)
Q Consensus 226 -~~~~a~~~lg~~y~~g~g----------~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~ 282 (331)
.+..|+++.|.++..-.+ ....++++++++.+|+.. ++..+++.++.++...+++++
T Consensus 175 p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 175 FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567777777777654100 124567777777777765 566777777777766655433
No 189
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.76 E-value=1.1e-07 Score=67.35 Aligned_cols=80 Identities=19% Similarity=0.309 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
++.+++.+|.++.. .+++++|+.+|++++.. +++.+++++|.++...+++++|+.+|++++...+
T Consensus 8 ~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--------- 74 (91)
T 1na3_A 8 SAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--------- 74 (91)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------
T ss_pred cHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---------
Confidence 57789999999999 89999999999999886 4899999999999999999999999999998866
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhc
Q 020091 178 EAVKLLYQASIAGHVRAQYQLALCLHR 204 (331)
Q Consensus 178 ~A~~~~~~a~~~~~~~a~~~lg~~y~~ 204 (331)
+++.++.++|.++..
T Consensus 75 ------------~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 75 ------------NNAEAKQNLGNAKQK 89 (91)
T ss_dssp ------------TCHHHHHHHHHHHHH
T ss_pred ------------CCHHHHHHHHHHHHh
Confidence 589999999998853
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.75 E-value=2.2e-07 Score=89.63 Aligned_cols=165 Identities=7% Similarity=-0.056 Sum_probs=138.8
Q ss_pred CCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHH
Q 020091 119 KNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDK----------KEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQA 186 (331)
Q Consensus 119 ~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a 186 (331)
.-.++|++++.+++..+ +..+++..+.++...++ +++++.+|.+++..++
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p------------------ 104 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP------------------ 104 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT------------------
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC------------------
Confidence 44568999999999875 89999999999988766 7888888888887766
Q ss_pred HHCCCHHHHHHHHHHHhcCCCCCC--CHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc-
Q 020091 187 SIAGHVRAQYQLALCLHRGRGVDF--NLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC- 261 (331)
Q Consensus 187 ~~~~~~~a~~~lg~~y~~G~g~~~--d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~- 261 (331)
.+..++++-+.++.. .+ ++++++.++.++++. .+..|+++.++++..-. ..++++++++.++++.
T Consensus 105 ---K~y~aW~hR~w~l~~----l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~---~~~~~el~~~~~~I~~~ 174 (567)
T 1dce_A 105 ---KSYGTWHHRCWLLSR----LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAA---VAPAEELAFTDSLITRN 174 (567)
T ss_dssp ---TCHHHHHHHHHHHHT----CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTC---CCHHHHHHHHHTTTTTT
T ss_pred ---CCHHHHHHHHHHHHH----cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcC---CChHHHHHHHHHHHHHC
Confidence 589999999999987 44 789999999999876 68999999999986621 2789999999999887
Q ss_pred -CCHHHHHHHHHHHhcc--------------CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhhhch
Q 020091 262 -GHGKAQLEHGLGLFTE--------------GEMMKAVVYLELATRA--GETAADHVKNVILQQLSA 311 (331)
Q Consensus 262 -~~~~a~~~Lg~~~~~~--------------~~~~~A~~~~~~A~~~--~~~~a~~~l~~~~~~l~~ 311 (331)
.+..+++..+.++... +.+++|+.++.+|+.. ++..+.+.++.++....+
T Consensus 175 p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 175 FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence 6789999999988763 5689999999999986 467888888888876654
No 191
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.71 E-value=2.4e-07 Score=69.10 Aligned_cols=77 Identities=18% Similarity=0.083 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 020091 123 KALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLAL 200 (331)
Q Consensus 123 ~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 200 (331)
+|+.+|++++... ++.+++++|.+|...|++++|+.+|++++...+ .++.+++++|.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---------------------~~~~~~~~la~ 61 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP---------------------TYSVAWKWLGK 61 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC---------------------CcHHHHHHHHH
Confidence 4677777777653 777788888888888888888888887777655 46777788888
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 201 CLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 201 ~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
+|.. .+++++|+.+|+++++
T Consensus 62 ~~~~----~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 62 TLQG----QGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHH----HTCHHHHHHHHHHHHH
T ss_pred HHHH----cCCHHHHHHHHHHHHH
Confidence 8776 6778888888887765
No 192
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.69 E-value=2.5e-06 Score=76.69 Aligned_cols=170 Identities=10% Similarity=-0.034 Sum_probs=139.1
Q ss_pred CCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHH
Q 020091 119 KNLDKALDSFLKGAARG--STLAMVDAGLMYWEMD-KKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQ 195 (331)
Q Consensus 119 ~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~ 195 (331)
...++|+.++.+++..+ +..+++..+.++...+ ++++++.++.+++..++ .+..++
T Consensus 68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP---------------------Kny~aW 126 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL---------------------KSYQVW 126 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC---------------------CCHHHH
T ss_pred CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC---------------------CcHHHH
Confidence 45568999999999875 8999999999998887 69999999999998877 589999
Q ss_pred HHHHHHHhcCCCCCC-CHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCC----ccccHHHHHHHHHHHHHc--CCHHH
Q 020091 196 YQLALCLHRGRGVDF-NLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEG----LPLSHRQARKWMKRAADC--GHGKA 266 (331)
Q Consensus 196 ~~lg~~y~~G~g~~~-d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g----~~~~~~~A~~~~~~a~~~--~~~~a 266 (331)
+..+.++... .+ ++++++.++.++++. .+..+++..++++..-.. ......+++.++.++++. .+-.|
T Consensus 127 ~hR~wlL~~l---~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SA 203 (349)
T 3q7a_A 127 HHRLLLLDRI---SPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSA 203 (349)
T ss_dssp HHHHHHHHHH---CCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHh---cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHH
Confidence 9999998762 13 789999999999876 678999999988854110 011234999999999887 57899
Q ss_pred HHHHHHHHhccCC-------HHHHHHHHHHHHHc--CCHHHHHHHHHHHhhhchh
Q 020091 267 QLEHGLGLFTEGE-------MMKAVVYLELATRA--GETAADHVKNVILQQLSAT 312 (331)
Q Consensus 267 ~~~Lg~~~~~~~~-------~~~A~~~~~~A~~~--~~~~a~~~l~~~~~~l~~~ 312 (331)
+.+.+.++...+. +++++.++.+++.. ++..+...+..++......
T Consensus 204 W~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 204 WGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 9999999988886 79999999999976 5688888888888776655
No 193
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.65 E-value=3.7e-07 Score=64.48 Aligned_cols=79 Identities=24% Similarity=0.278 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHH
Q 020091 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEA 215 (331)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A 215 (331)
++.+++.+|.++...+++++|+.+|++++...+ +++.+++++|.+|.. .+++++|
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~---------------------~~~~~~~~l~~~~~~----~~~~~~A 62 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---------------------NNAEAWYNLGNAYYK----QGDYDEA 62 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHH----TTCHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC---------------------CCHHHHHHHHHHHHH----HhhHHHH
Confidence 355677788888777888888888877777654 467777788887776 6778888
Q ss_pred HHHHHHHHHC--CCHHHHHHHHHHHh
Q 020091 216 ARWYLRAAEG--GYVRAMYNTSLCYS 239 (331)
Q Consensus 216 ~~~~~~A~~~--~~~~a~~~lg~~y~ 239 (331)
+.+|+++++. ++..++.++|.++.
T Consensus 63 ~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 63 IEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 8888887664 56777777777764
No 194
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.63 E-value=3.2e-07 Score=66.92 Aligned_cols=62 Identities=18% Similarity=0.234 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (331)
++.+++.+|.+|.. .+++++|+.+|+++++.+ ++.++++||.+|...|++++|+.+|++++.
T Consensus 6 ~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLK----HDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44455555555554 455555555555554432 444555555555555555555555444443
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.62 E-value=7.7e-08 Score=70.32 Aligned_cols=74 Identities=11% Similarity=0.099 Sum_probs=42.5
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----CCHHHHHHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GSTLAMVDA 143 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~~~~a~~~l 143 (331)
.+..+...+..|++++|+..+.+.++..++ ++.+++.||.+|.. .+++++|+.+|+++++. ++..+...+
T Consensus 10 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~~~~~~~~~~~~l 83 (100)
T 3ma5_A 10 RYALAQEHLKHDNASRALALFEELVETDPD--YVGTYYHLGKLYER----LDRTDDAIDTYAQGIEVAREEGTQKDLSEL 83 (100)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhhhcCCchhHHHHH
Confidence 344444455666666666666666665443 45566666666666 66666666666666643 344444444
Q ss_pred HHHH
Q 020091 144 GLMY 147 (331)
Q Consensus 144 g~~~ 147 (331)
..++
T Consensus 84 ~~~l 87 (100)
T 3ma5_A 84 QDAK 87 (100)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.61 E-value=8.6e-07 Score=66.03 Aligned_cols=76 Identities=14% Similarity=-0.017 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 020091 214 EAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLEL 289 (331)
Q Consensus 214 ~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~ 289 (331)
+|+.+|+++++. +++.+++++|.+|.. .+++++|+.+|++++.. .+..+++.||.+|...|++++|+.+|++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAE----HEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 466677777654 567777777777755 34777777777777765 4567888888888888888888888888
Q ss_pred HHHc
Q 020091 290 ATRA 293 (331)
Q Consensus 290 A~~~ 293 (331)
+++.
T Consensus 79 al~~ 82 (115)
T 2kat_A 79 GLAA 82 (115)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8765
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.60 E-value=5.9e-07 Score=65.93 Aligned_cols=79 Identities=11% Similarity=0.024 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHH
Q 020091 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEA 215 (331)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A 215 (331)
++.+++.+|.++...|++++|+.+|++++...+ +++.+++++|.+|.. .+++++|
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---------------------~~~~~~~~lg~~~~~----~g~~~~A 57 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP---------------------QNPVGYSNKAMALIK----LGEYTQA 57 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHH----TTCHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---------------------CCHHHHHHHHHHHHH----hcCHHHH
Confidence 356777888888888888888888888887765 467888888888876 6778888
Q ss_pred HHHHHHHHHC--CC------HHHHHHHHHHHh
Q 020091 216 ARWYLRAAEG--GY------VRAMYNTSLCYS 239 (331)
Q Consensus 216 ~~~~~~A~~~--~~------~~a~~~lg~~y~ 239 (331)
+.+|+++++. ++ ..+++.+|.++.
T Consensus 58 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 89 (111)
T 2l6j_A 58 IQMCQQGLRYTSTAEHVAIRSKLQYRLELAQG 89 (111)
T ss_dssp HHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence 8888888765 33 556666666664
No 198
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.55 E-value=2.5e-06 Score=75.24 Aligned_cols=180 Identities=10% Similarity=-0.032 Sum_probs=129.6
Q ss_pred hHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHhcCCCHHHHHHH
Q 020091 84 ASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GSTLAMVDAGLMYWEMDKKEAAISL 159 (331)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~~~~a~~~lg~~~~~~~~~~~A~~~ 159 (331)
++..+.++.... .....+.+.+|.++.. .+++++|+.++.+.+.. ++.+++..++.++...|+.+.|.+.
T Consensus 85 a~~~l~~l~~~~--~~~~~~~~~la~i~~~----~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~ 158 (310)
T 3mv2_B 85 NIEELENLLKDK--QNSPYELYLLATAQAI----LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTI 158 (310)
T ss_dssp CCHHHHHTTTTS--CCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcC--CCCcHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 443334444332 2456777899999999 89999999999999876 4788999999999999999999999
Q ss_pred HHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHH--Hh-cCCCCCCCHHHHHHHHHHHHHCC-C---HHHHH
Q 020091 160 YRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALC--LH-RGRGVDFNLQEAARWYLRAAEGG-Y---VRAMY 232 (331)
Q Consensus 160 ~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~--y~-~G~g~~~d~~~A~~~~~~A~~~~-~---~~a~~ 232 (331)
+++.....++. -| ++.....+|+.. .. .| .+++.+|+..|+++++.. + ...++
T Consensus 159 l~~~~~~~~d~----------~~-------~~d~~l~~Laea~v~l~~g---~~~~q~A~~~f~El~~~~p~~~~~~lLl 218 (310)
T 3mv2_B 159 FDNYTNAIEDT----------VS-------GDNEMILNLAESYIKFATN---KETATSNFYYYEELSQTFPTWKTQLGLL 218 (310)
T ss_dssp HHHHHHHSCHH----------HH-------HHHHHHHHHHHHHHHHHHT---CSTTTHHHHHHHHHHTTSCSHHHHHHHH
T ss_pred HHHHHhcCccc----------cc-------cchHHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhCCCcccHHHHH
Confidence 98876664200 00 013444555533 22 12 247999999999988763 3 33444
Q ss_pred HHHHHHhcCCCccccHHHHHHHHHHHHH------------cCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHH
Q 020091 233 NTSLCYSFGEGLPLSHRQARKWMKRAAD------------CGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA 298 (331)
Q Consensus 233 ~lg~~y~~g~g~~~~~~~A~~~~~~a~~------------~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a 298 (331)
+ ++.. .+++++|...++.... ..++++..++..+....|+ +|.++++++.+..+..+
T Consensus 219 n---~~~~----~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 219 N---LHLQ----QRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp H---HHHH----HTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred H---HHHH----cCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 5 5544 4499999999986543 4578888888888888887 89999999998875443
No 199
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.52 E-value=4.1e-06 Score=82.17 Aligned_cols=131 Identities=8% Similarity=-0.091 Sum_probs=91.8
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-C--CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHH
Q 020091 193 RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-G--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQ 267 (331)
Q Consensus 193 ~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~-~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~ 267 (331)
.++..+..+..+ .++.+.|...|.+|.+. + ....+...+.+-..- .++.+.|...|+++++. .++..+
T Consensus 435 ~vWi~y~~~erR----~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~---~~d~e~Ar~ife~~Lk~~p~~~~~w 507 (679)
T 4e6h_A 435 YVYCVYMNTMKR----IQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI---SKDTKTACKVLELGLKYFATDGEYI 507 (679)
T ss_dssp HHHHHHHHHHHH----HHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT---TSCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCchHHH
Confidence 345555555544 45689999999999876 3 344555556555432 23689999999999886 455666
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 268 LEHGLGLFTEGEMMKAVVYLELATRAGE---TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 268 ~~Lg~~~~~~~~~~~A~~~~~~A~~~~~---~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
..++.+....|+.+.|..+|++|+...+ .........+.-....|+.+.+..+.++..+..|.
T Consensus 508 ~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 508 NKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 6777777788999999999999998765 23333333344445567888888888888877775
No 200
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.51 E-value=1.1e-06 Score=64.81 Aligned_cols=65 Identities=9% Similarity=-0.005 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGD 168 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~---------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~ 168 (331)
.+.-|+.||..++. .+++.+|+.||++|++. ..+..+..||.++.+.|++++|+.++++++.+.|
T Consensus 4 sa~dc~~lG~~~~~----~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 4 TAEDCFELGKVAYT----EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHH----ccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 46789999999999 99999999999999874 2577899999999999999999999999998877
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.41 E-value=3.7e-06 Score=79.40 Aligned_cols=130 Identities=13% Similarity=0.080 Sum_probs=100.3
Q ss_pred HHHhccCCchHHHhHHHHHHHHHHhCC---CCC---HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-----C--CH
Q 020091 71 KIAASFTLPQLRAASLVCKSWNDALRP---LRE---AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----G--ST 137 (331)
Q Consensus 71 ~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~---~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-----~--~~ 137 (331)
.+.....+|++++|+.++.+.++.... ..| +.++.+||.+|.. .|++++|..+|+++++. | ||
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~----~g~~~eA~~~~~~aL~i~~~~lG~~Hp 390 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSY----LQAYEEASHYARRMVDGYMKLYHHNNA 390 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 334456889999999999888876543 224 4579999999999 89999999999999865 3 55
Q ss_pred H---HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHH---HHHHHHHHHhcCCCCCCC
Q 020091 138 L---AMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVR---AQYQLALCLHRGRGVDFN 211 (331)
Q Consensus 138 ~---a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---a~~~lg~~y~~G~g~~~d 211 (331)
. ++.+||.+|...|++++|+.+|++|+++ +++..-.+++. ...+|+.++.. .+.
T Consensus 391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i----------------~~~~lG~~Hp~~~~~~~~l~~~~~e----~~~ 450 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAI----------------LLVTHGPSHPITKDLEAMRMQTEME----LRM 450 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------HHHHTCTTSHHHHHHHHHHHHHHHH----HHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------HHHHhCCCChHHHHHHHHHHHHHHH----HHH
Confidence 4 5789999999999999999999988754 33333345654 44678888865 667
Q ss_pred HHHHHHHHHHHHH
Q 020091 212 LQEAARWYLRAAE 224 (331)
Q Consensus 212 ~~~A~~~~~~A~~ 224 (331)
+.+|...|+++-+
T Consensus 451 ~~~ae~~~~~~~~ 463 (490)
T 3n71_A 451 FRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8999999988854
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.37 E-value=4.4e-06 Score=78.87 Aligned_cols=87 Identities=8% Similarity=-0.075 Sum_probs=71.2
Q ss_pred CCCHHHHHHHHHHHHhC-------CCH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHH
Q 020091 118 RKNLDKALDSFLKGAAR-------GST---LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQAS 187 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~-------~~~---~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~ 187 (331)
.|++++|+.+|+++.+. .|+ .++.+||.+|...|++++|+.+|+++++. +++..
T Consensus 322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i----------------~~~~l 385 (490)
T 3n71_A 322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG----------------YMKLY 385 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------HHHHS
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH----------------HHHHc
Confidence 79999999999999864 254 46789999999999999999999887754 33444
Q ss_pred HCCCH---HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 188 IAGHV---RAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 188 ~~~~~---~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
-.+++ .++++||.+|.. ++++++|+.+|++|++
T Consensus 386 G~~Hp~~a~~l~nLa~~~~~----~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 386 HHNNAQLGMAVMRAGLTNWH----AGHIEVGHGMICKAYA 421 (490)
T ss_dssp CTTCHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHH
Confidence 34554 467899999987 7889999999999975
No 203
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.28 E-value=1.2e-06 Score=63.28 Aligned_cols=61 Identities=18% Similarity=0.183 Sum_probs=54.9
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 105 LRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STL-AMVDAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 105 ~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~-a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
+.+|.++.. .+++++|+.+|+++++.. ++. +++++|.+|...|++++|+.+|++++..++.
T Consensus 4 ~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 4 LKTIKELIN----QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHH----HTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 567888888 899999999999998874 788 9999999999999999999999999998774
No 204
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.25 E-value=2.3e-06 Score=61.69 Aligned_cols=87 Identities=9% Similarity=-0.144 Sum_probs=56.5
Q ss_pred HHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 020091 232 YNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGK-AQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQ 308 (331)
Q Consensus 232 ~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~-a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~ 308 (331)
+..|.++.. .+++++|+.+|++++.. .+.. +++.+|.+|...|++++|+.+|+++++.++........
T Consensus 4 ~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----- 74 (99)
T 2kc7_A 4 LKTIKELIN----QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR----- 74 (99)
T ss_dssp HHHHHHHHH----HTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-----
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-----
Confidence 445566654 44777888888877765 3556 77888888888888888888888888776543322111
Q ss_pred hchhcHHHHHHHHHhhhcCCCC
Q 020091 309 LSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 309 l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
..+.++...+++.....|+
T Consensus 75 ---~~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 75 ---KMVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp ---HHHHHHHHHHCCTTHHHHC
T ss_pred ---HHHHHHHHHHHHHhccCcc
Confidence 4455666666665544443
No 205
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.24 E-value=1e-05 Score=59.37 Aligned_cols=74 Identities=9% Similarity=0.069 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcCCCccccHHHHHHHHHHHHHc---------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CHHH
Q 020091 230 AMYNTSLCYSFGEGLPLSHRQARKWMKRAADC---------GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAA 298 (331)
Q Consensus 230 a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---------~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~--~~~a 298 (331)
-++.||..++. .+++..|+.||++|... ...+.+..||.+++..|++++|+.++++|++.. +..+
T Consensus 7 dc~~lG~~~~~----~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 7 DCFELGKVAYT----EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHH----ccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 34455555544 33555555555555432 235677899999999999999999999998765 4566
Q ss_pred HHHHHHHHh
Q 020091 299 DHVKNVILQ 307 (331)
Q Consensus 299 ~~~l~~~~~ 307 (331)
..|+..+..
T Consensus 83 ~~n~~~~~~ 91 (104)
T 2v5f_A 83 NGNLKYFEY 91 (104)
T ss_dssp HHHHHHHHH
T ss_pred HhhHHHHHH
Confidence 666664433
No 206
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.07 E-value=7.8e-05 Score=58.36 Aligned_cols=100 Identities=11% Similarity=0.106 Sum_probs=79.3
Q ss_pred CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC----CHHHHHHHHHHHhccCCHHHH
Q 020091 210 FNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG----HGKAQLEHGLGLFTEGEMMKA 283 (331)
Q Consensus 210 ~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~~~~~~~~~~A 283 (331)
.+...+.+-|.+..+. .+..+.+++|+++.+ ...+.+..+++..|+...+.+ +.+..|+||..++..|++++|
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~-S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-SKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 3466777788887774 468899999999976 233558889999999998876 357889999999999999999
Q ss_pred HHHHHHHHHcCC--HHHHHHHHHHHhhhc
Q 020091 284 VVYLELATRAGE--TAADHVKNVILQQLS 310 (331)
Q Consensus 284 ~~~~~~A~~~~~--~~a~~~l~~~~~~l~ 310 (331)
..+++++++..+ .+|......+...+.
T Consensus 91 ~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~ 119 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKELERLIDKAMK 119 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 999999998754 777777666665553
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.05 E-value=0.00011 Score=66.22 Aligned_cols=140 Identities=11% Similarity=-0.112 Sum_probs=92.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--CCC-CCCCHHHHHH-HHHHHH---
Q 020091 151 DKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHR--GRG-VDFNLQEAAR-WYLRAA--- 223 (331)
Q Consensus 151 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~--G~g-~~~d~~~A~~-~~~~A~--- 223 (331)
.++.+|+.+|++|++++| +++.++..++.+|.. +.+ ...+...++. .++.+.
T Consensus 213 ~~~~~A~~l~e~Al~lDP---------------------~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~ 271 (372)
T 3ly7_A 213 KSLNRASELLGEIVQSSP---------------------EFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP 271 (372)
T ss_dssp HHHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc
Confidence 345777888888877766 688888888877742 111 1111222222 222221
Q ss_pred -HCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHH
Q 020091 224 -EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHV 301 (331)
Q Consensus 224 -~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~ 301 (331)
...++.++..++.++.. ..++++|+.++++|+..+ +..++..+|.++...|+.++|+..|++|+..++....+
T Consensus 272 ~~~~~a~~~~alal~~l~----~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~- 346 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALV----KGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTL- 346 (372)
T ss_dssp GGTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHH-
T ss_pred cCCcCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChH-
Confidence 13567777777776643 349999999999999884 45667789999999999999999999999998765432
Q ss_pred HHHHHhhhchhcHHHH
Q 020091 302 KNVILQQLSATSRDRA 317 (331)
Q Consensus 302 l~~~~~~l~~~~~~~a 317 (331)
-.........+++..
T Consensus 347 -~~~~~l~F~sn~~~i 361 (372)
T 3ly7_A 347 -YWIENGIFQTSVPYV 361 (372)
T ss_dssp -HHHHHSSSCCCHHHH
T ss_pred -HHHhCceeecchhhh
Confidence 233333344444443
No 208
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.02 E-value=1.9e-05 Score=73.38 Aligned_cols=87 Identities=11% Similarity=-0.054 Sum_probs=71.2
Q ss_pred CCCHHHHHHHHHHHHhC-----C--CH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHH
Q 020091 118 RKNLDKALDSFLKGAAR-----G--ST---LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQAS 187 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~-----~--~~---~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~ 187 (331)
.+++++|+.+|+++.+. | |+ .++.+||.+|...|++++|+.+|+++++. +++..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i----------------~~~~l 374 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP----------------YSKHY 374 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------HHHHS
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH----------------HHHHc
Confidence 57999999999999864 2 54 45789999999999999999999988754 33333
Q ss_pred HCCCH---HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 188 IAGHV---RAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 188 ~~~~~---~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
-.+++ ..+++||.+|.. ++++++|+.+|++|++
T Consensus 375 G~~Hp~~a~~l~nLa~~~~~----qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 375 PVYSLNVASMWLKLGRLYMG----LENKAAGEKALKKAIA 410 (433)
T ss_dssp CSSCHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHH
Confidence 33455 458899999987 7899999999999976
No 209
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.02 E-value=3.2e-05 Score=55.58 Aligned_cols=71 Identities=11% Similarity=-0.094 Sum_probs=60.9
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
..++..+..+|.++.... .....++|..+|++|+..+ ++.+.+.||..++..|++++|+.+|+++++..++
T Consensus 3 p~~~~~~~~~a~al~~~~-~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLH-KQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTT-TTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 458899999998886421 1344899999999999875 9999999999999999999999999999998776
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.95 E-value=5.4e-05 Score=70.31 Aligned_cols=88 Identities=11% Similarity=0.054 Sum_probs=72.5
Q ss_pred ccCCchHHHhHHHHHHHHHHhCC---CCC---HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-----C--CHH---
Q 020091 75 SFTLPQLRAASLVCKSWNDALRP---LRE---AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----G--STL--- 138 (331)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~---~~~---~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-----~--~~~--- 138 (331)
.-..|++++|+.++.+.++.... ..| +.++.+||.+|.. .|++++|+.+|+++++. | ||+
T Consensus 308 ~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~----~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 383 (433)
T 3qww_A 308 AKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY----MQDWEGALKYGQKIIKPYSKHYPVYSLNVAS 383 (433)
T ss_dssp HTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 34568899999999888775432 234 3578899999999 89999999999999864 3 554
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 020091 139 AMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (331)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (331)
.+++||.+|...|++++|+.+|++|+++
T Consensus 384 ~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 384 MWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 5789999999999999999999998754
No 211
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.90 E-value=0.0012 Score=64.76 Aligned_cols=200 Identities=6% Similarity=-0.140 Sum_probs=148.6
Q ss_pred HhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHH-HHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHH
Q 020091 83 AASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKAL-DSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISL 159 (331)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~-~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~ 159 (331)
....+|.+.+...+. ++..++..+.++.. .++.++|. ..|++|+..- +...++.++.+....+++++|...
T Consensus 327 Rv~~~Ye~aL~~~p~--~~~lW~~ya~~~~~----~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~i 400 (679)
T 4e6h_A 327 RMTYVYMQAAQHVCF--APEIWFNMANYQGE----KNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETT 400 (679)
T ss_dssp HHHHHHHHHHHHTTT--CHHHHHHHHHHHHH----HSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCC--CHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 344567777776554 78999999999887 67788997 9999999753 556677888888889999999999
Q ss_pred HHHHHHcC-----------CC-----------CC-----------CccCHHHHHHHHHHHHHC-C--CHHHHHHHHHHHh
Q 020091 160 YRQAAVLG-----------DP-----------AA-----------QPANAEEAVKLLYQASIA-G--HVRAQYQLALCLH 203 (331)
Q Consensus 160 ~~~a~~~~-----------~~-----------~~-----------~~~~~~~A~~~~~~a~~~-~--~~~a~~~lg~~y~ 203 (331)
|++++... +. .. ..++.+.|..+|.+|.+. . ....+...+.+-.
T Consensus 401 yek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~ 480 (679)
T 4e6h_A 401 ILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEY 480 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 99998742 21 11 457789999999999875 3 3556666666554
Q ss_pred cCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC-----HHHHHHHHHHHhc
Q 020091 204 RGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH-----GKAQLEHGLGLFT 276 (331)
Q Consensus 204 ~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----~~a~~~Lg~~~~~ 276 (331)
. ..++.+.|...|.++++. .++..+...+..... .++.+.|..+|++|+.... ...+..+..+-..
T Consensus 481 ~---~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~----~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~ 553 (679)
T 4e6h_A 481 H---ISKDTKTACKVLELGLKYFATDGEYINKYLDFLIY----VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESK 553 (679)
T ss_dssp T---TTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHH
T ss_pred H---hCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 4 246689999999999885 555555555554433 3489999999999998744 2344455555566
Q ss_pred cCCHHHHHHHHHHHHHcCC
Q 020091 277 EGEMMKAVVYLELATRAGE 295 (331)
Q Consensus 277 ~~~~~~A~~~~~~A~~~~~ 295 (331)
.|+.+.+...++++.+.-+
T Consensus 554 ~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 554 VGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp TCCSHHHHHHHHHHHHHST
T ss_pred cCCHHHHHHHHHHHHHhCC
Confidence 8999999999999987643
No 212
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.83 E-value=0.005 Score=58.18 Aligned_cols=156 Identities=8% Similarity=-0.086 Sum_probs=113.9
Q ss_pred CCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCC---C
Q 020091 118 RKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAG---H 191 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~---~ 191 (331)
.|+.++|++.|.+..+.| +..++..|=..+...+.. .......+.++|..+|.+....| +
T Consensus 39 ~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~--------------~~~~~~~~l~~A~~lf~~M~~~G~~Pd 104 (501)
T 4g26_A 39 KGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAA--------------TESSPNPGLSRGFDIFKQMIVDKVVPN 104 (501)
T ss_dssp SCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCC--------------SSSSCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCch--------------hhhhhcchHHHHHHHHHHHHHhCCCCC
Confidence 789999999999998887 555555554444443210 00012334555555555554443 6
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC---CHH
Q 020091 192 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG---HGK 265 (331)
Q Consensus 192 ~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 265 (331)
...+..|-..|.. .++.++|.++|++..+.| +...+..|-..|.. .++.++|.+.|..-.+.| +..
T Consensus 105 ~~tyn~lI~~~~~----~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~----~g~~~~A~~l~~~M~~~G~~Pd~~ 176 (501)
T 4g26_A 105 EATFTNGARLAVA----KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR----KGDADKAYEVDAHMVESEVVPEEP 176 (501)
T ss_dssp HHHHHHHHHHHHH----HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCCHH
Confidence 6777777777765 688999999999998875 66777777777765 449999999999988875 566
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 020091 266 AQLEHGLGLFTEGEMMKAVVYLELATRAGE 295 (331)
Q Consensus 266 a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~ 295 (331)
.+..|-..|...|+.++|...|++.-+.+-
T Consensus 177 ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~ 206 (501)
T 4g26_A 177 ELAALLKVSMDTKNADKVYKTLQRLRDLVR 206 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHhCC
Confidence 777888889999999999999999987763
No 213
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.82 E-value=0.00013 Score=63.31 Aligned_cols=106 Identities=11% Similarity=-0.050 Sum_probs=83.6
Q ss_pred CCCHHHHHHHHHHHhc-------CCCCCCCHHHHHHHHHHHHhCC----CHHHHHHHHHHHhc-----CCCHHHHHHHHH
Q 020091 98 LREAMVLLRWGKRFKH-------GRGVRKNLDKALDSFLKGAARG----STLAMVDAGLMYWE-----MDKKEAAISLYR 161 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~-------g~g~~~~~~~A~~~~~~A~~~~----~~~a~~~lg~~~~~-----~~~~~~A~~~~~ 161 (331)
..++++++.+|.+... |.|......+|...+++|++++ +..++..||.+|.. +|+.++|..+|+
T Consensus 149 ~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fe 228 (301)
T 3u64_A 149 RVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFE 228 (301)
T ss_dssp GGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHH
Confidence 3478888888877743 2345566788999999999886 45688999999988 589999999999
Q ss_pred HHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC
Q 020091 162 QAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG 226 (331)
Q Consensus 162 ~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~ 226 (331)
+|+++++. ++..+.+.+|..+.. ..+|+++|..++++|+...
T Consensus 229 rAL~LnP~--------------------~~id~~v~YA~~l~~---~~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 229 HLTRYCSA--------------------HDPDHHITYADALCI---PLNNRAGFDEALDRALAID 270 (301)
T ss_dssp HHHHHCCT--------------------TCSHHHHHHHHHTTT---TTTCHHHHHHHHHHHHHCC
T ss_pred HHHHhCCC--------------------CCchHHHHHHHHHHH---hcCCHHHHHHHHHHHHcCC
Confidence 99888763 358899999998865 1488999999999998753
No 214
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.77 E-value=0.00022 Score=61.75 Aligned_cols=108 Identities=10% Similarity=-0.050 Sum_probs=86.0
Q ss_pred CCCHHHHHHHHHHHhc-------CCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHhcCCC-ccccHHHHHHHHH
Q 020091 189 AGHVRAQYQLALCLHR-------GRGVDFNLQEAARWYLRAAEGG----YVRAMYNTSLCYSFGEG-LPLSHRQARKWMK 256 (331)
Q Consensus 189 ~~~~~a~~~lg~~y~~-------G~g~~~d~~~A~~~~~~A~~~~----~~~a~~~lg~~y~~g~g-~~~~~~~A~~~~~ 256 (331)
.+++++++..|..... |.+......+|...+++|++.+ +..++..||.+|..--+ .-.+.++|..+|+
T Consensus 149 ~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fe 228 (301)
T 3u64_A 149 RVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFE 228 (301)
T ss_dssp GGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHH
Confidence 3688899988876532 3355677889999999999874 35689999999976210 1249999999999
Q ss_pred HHHHcC---CHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHcCCH
Q 020091 257 RAADCG---HGKAQLEHGLGLFT-EGEMMKAVVYLELATRAGET 296 (331)
Q Consensus 257 ~a~~~~---~~~a~~~Lg~~~~~-~~~~~~A~~~~~~A~~~~~~ 296 (331)
+|++.+ +.++.+.+|..+.. .++.++|..++++|+...+.
T Consensus 229 rAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 229 HLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 999873 48999999999888 59999999999999987544
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.77 E-value=0.00017 Score=66.97 Aligned_cols=87 Identities=8% Similarity=-0.147 Sum_probs=70.9
Q ss_pred CCCHHHHHHHHHHHHhC-------CCH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHH
Q 020091 118 RKNLDKALDSFLKGAAR-------GST---LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQAS 187 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~-------~~~---~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~ 187 (331)
.+++++|+..|+++++. .|+ .++.+||.+|...|++++|+.+|++++.. +++..
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i----------------~~~~l 363 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEP----------------YRIFF 363 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------HHHHS
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh----------------HHHHc
Confidence 47999999999999865 244 46789999999999999999999988754 33443
Q ss_pred HCCCH---HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 188 IAGHV---RAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 188 ~~~~~---~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
-..++ ..+++||.+|.. ++++++|+.+|++|++
T Consensus 364 g~~Hp~~a~~l~nLa~~~~~----~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 364 PGSHPVRGVQVMKVGKLQLH----QGMFPQAMKNLRLAFD 399 (429)
T ss_dssp CSSCHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Confidence 34554 458899999987 7899999999999976
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.76 E-value=0.00015 Score=56.69 Aligned_cols=68 Identities=9% Similarity=0.044 Sum_probs=60.9
Q ss_pred CCCHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHhCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 98 LREAMVLLRWGKRFKHGRGVRK---NLDKALDSFLKGAARG----STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~---~~~~A~~~~~~A~~~~----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
..+..+.|++|.++.+ .+ +.++++..|+..++.+ +.+++|+||..|++.+++++|+.+++++++..|.
T Consensus 29 ~~~~~~~F~ya~~Lv~----S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVR----SKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ 103 (152)
T ss_dssp CCCHHHHHHHHHHHHT----CSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT
T ss_pred CCcHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 4589999999999988 55 7779999999999877 4679999999999999999999999999999774
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.72 E-value=0.0008 Score=60.50 Aligned_cols=151 Identities=11% Similarity=-0.048 Sum_probs=101.3
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 020091 90 SWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLG 167 (331)
Q Consensus 90 ~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~ 167 (331)
+..+..+...++--+|.-|.-+... +...+..+|+.+|++|++.. ++.++..++.+|... .. .+
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~-~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~-------~~------~~ 250 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLH-GDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVR-------HS------QH 250 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-------HH------HS
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-------hc------cC
Confidence 4455566655666777777766552 33566799999999999874 888888888888521 00 00
Q ss_pred CCCCCccCHHHHHH-HHHHH----HHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHhcC
Q 020091 168 DPAAQPANAEEAVK-LLYQA----SIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-YVRAMYNTSLCYSFG 241 (331)
Q Consensus 168 ~~~~~~~~~~~A~~-~~~~a----~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~-~~~a~~~lg~~y~~g 241 (331)
+ . ......++. .++.+ ....++.++..++.++.. .+++++|+.++++|+..+ +..++..+|.++..
T Consensus 251 ~-~--~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~----~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~- 322 (372)
T 3ly7_A 251 P-L--DEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALV----KGKTDESYQAINTGIDLEMSWLNYVLLGKVYEM- 322 (372)
T ss_dssp C-C--CHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-
T ss_pred C-C--chhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-
Confidence 0 0 000111111 11111 123578888888887764 688999999999998874 45566788999865
Q ss_pred CCccccHHHHHHHHHHHHHcCCHH
Q 020091 242 EGLPLSHRQARKWMKRAADCGHGK 265 (331)
Q Consensus 242 ~g~~~~~~~A~~~~~~a~~~~~~~ 265 (331)
.++.++|.+.|.+|...+...
T Consensus 323 ---~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 323 ---KGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp ---TTCHHHHHHHHHHHHHHSCSH
T ss_pred ---CCCHHHHHHHHHHHHhcCCCc
Confidence 449999999999999986543
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.69 E-value=0.00021 Score=51.17 Aligned_cols=70 Identities=7% Similarity=-0.062 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCH
Q 020091 226 GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET 296 (331)
Q Consensus 226 ~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~ 296 (331)
.++..+..+|.++....+ ....++|..+|++|+.. .++.+.+.||..++..|++++|+.+|+++++.++.
T Consensus 4 ~~~~~~~~~a~al~~~~~-~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHK-QAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTT-TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 456777777777743322 23578888888888776 56888899999999999999999999999887765
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.66 E-value=0.00012 Score=67.81 Aligned_cols=94 Identities=14% Similarity=-0.018 Sum_probs=74.4
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCC---CCC---HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-----C--
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRP---LRE---AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----G-- 135 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~---~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-----~-- 135 (331)
+..+.....+|++++|+..+.+.++.... ..| +.++.+||.+|.. .|++++|+.++++++.. |
T Consensus 291 l~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~----~g~~~eA~~~~~~~L~i~~~~lg~~ 366 (429)
T 3qwp_A 291 LKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN----LGLLEEALFYGTRTMEPYRIFFPGS 366 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHHhHHHHcCCC
Confidence 34444456778999999888877754322 224 4578999999999 89999999999999864 3
Q ss_pred CHH---HHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 020091 136 STL---AMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (331)
Q Consensus 136 ~~~---a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (331)
+|. .+++||.+|...|++++|+.+|++|+++
T Consensus 367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 554 5789999999999999999999988754
No 220
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.50 E-value=0.0096 Score=56.22 Aligned_cols=167 Identities=12% Similarity=0.009 Sum_probs=120.7
Q ss_pred CHHHH-HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-CC----CCC
Q 020091 136 STLAM-VDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHR-GR----GVD 209 (331)
Q Consensus 136 ~~~a~-~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~-G~----g~~ 209 (331)
.|++. ..+=..+.+.|+.++|+.+|.+....|-. -+...+..|=.+|.. |. ...
T Consensus 24 spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~--------------------pd~~tyn~Li~~c~~~~~~~~~~~~ 83 (501)
T 4g26_A 24 SPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQ--------------------LSQYHYNVLLYVCSLAEAATESSPN 83 (501)
T ss_dssp CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCC--------------------CCHHHHHHHHHHHTTCCCCSSSSCC
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--------------------CCHhHHHHHHHHHHhCCchhhhhhc
Confidence 45543 33335566778888888888887766532 255566655555543 22 123
Q ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccCCHHHH
Q 020091 210 FNLQEAARWYLRAAEGG---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG---HGKAQLEHGLGLFTEGEMMKA 283 (331)
Q Consensus 210 ~d~~~A~~~~~~A~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~~~~~~~~~~A 283 (331)
++.++|.+.|.+....| +...+..|-..|.. .++.++|..+|++-...| +...+..|-..|...|+.++|
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~----~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A 159 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVA----KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKA 159 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHH
Confidence 46899999999988876 67778888777766 459999999999988775 567777788888999999999
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHhhhchhcHHHHHHHHHhhhc
Q 020091 284 VVYLELATRAGE-TAADHVKNVILQQLSATSRDRAMLVVDSWRA 326 (331)
Q Consensus 284 ~~~~~~A~~~~~-~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~ 326 (331)
...|+...+.|- ++....-..+......++.++|.+++++.++
T Consensus 160 ~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 999999998873 3333344455556677888999999998764
No 221
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.28 E-value=0.0051 Score=46.30 Aligned_cols=99 Identities=11% Similarity=0.107 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCH----HHHHHHHHHHhccCCHHHHHH
Q 020091 212 LQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHG----KAQLEHGLGLFTEGEMMKAVV 285 (331)
Q Consensus 212 ~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~----~a~~~Lg~~~~~~~~~~~A~~ 285 (331)
.....+-|.++... ....+.++++|++.+. ..+.+..+++..++.....+++ +..|.||..+++.|+|++|..
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S-~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRT-RYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTS-SSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 55666777777664 4588999999999663 3366777899999998877643 567899999999999999999
Q ss_pred HHHHHHHcC--CHHHHHHHHHHHhhhch
Q 020091 286 YLELATRAG--ETAADHVKNVILQQLSA 311 (331)
Q Consensus 286 ~~~~A~~~~--~~~a~~~l~~~~~~l~~ 311 (331)
+.+..++.. +.+|..+...+...+.+
T Consensus 96 ~~~~lL~~eP~n~QA~~Lk~~i~~~i~k 123 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAKELERLIDKAMKK 123 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 999999875 57888777777665544
No 222
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.96 E-value=0.085 Score=49.55 Aligned_cols=45 Identities=9% Similarity=-0.205 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 177 EEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 177 ~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
+.....|++++. +..+..++..+..+.. .++.++|...|.+|+..
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~----~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIG----IGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhC
Confidence 345567777776 4567888888887765 67888999999988765
No 223
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.58 E-value=0.017 Score=43.63 Aligned_cols=85 Identities=11% Similarity=0.120 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHc--CCHHHHHH
Q 020091 227 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH---GKAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADHV 301 (331)
Q Consensus 227 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~--~~~~a~~~ 301 (331)
.+.+.++++|++.+... ..+..+++..++.....+. .+..+.||..+++.|++++|..+.+..++. ++.+|..+
T Consensus 39 s~qt~F~yAw~Lv~S~~-~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTD-VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp CHHHHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred ChhhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 57888999999876543 5678899999988876643 567899999999999999999999999876 57888888
Q ss_pred HHHHHhhhchh
Q 020091 302 KNVILQQLSAT 312 (331)
Q Consensus 302 l~~~~~~l~~~ 312 (331)
...+...+.++
T Consensus 118 k~~Ie~ki~kd 128 (134)
T 3o48_A 118 KSMVEDKIQKE 128 (134)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 77777766544
No 224
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.55 E-value=0.019 Score=45.24 Aligned_cols=92 Identities=11% Similarity=0.090 Sum_probs=70.0
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCC-------HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-----
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLRE-------AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG----- 135 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~----- 135 (331)
.+.....+++.+.++.|+.++..+.....+..+ ..+++.+|..++. .++|.+|..+|++|+...
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~----~~eyrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFH----DKEYRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHc----ccHHHHHHHHHHHHHHHHHHHhc
Confidence 355556677788899887777665555433333 3578999999999 899999999999986431
Q ss_pred C----------------------HHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 020091 136 S----------------------TLAMVDAGLMYWEMDKKEAAISLYRQA 163 (331)
Q Consensus 136 ~----------------------~~a~~~lg~~~~~~~~~~~A~~~~~~a 163 (331)
. .+..|.++.||.+.++.++|+..++..
T Consensus 99 ~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 99 TSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred CCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1 157799999999999999999987653
No 225
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.44 E-value=0.078 Score=49.80 Aligned_cols=161 Identities=7% Similarity=-0.097 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-------CccCHHHHH-HHHHHH--HH
Q 020091 121 LDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-------QPANAEEAV-KLLYQA--SI 188 (331)
Q Consensus 121 ~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-------~~~~~~~A~-~~~~~a--~~ 188 (331)
.......|++++.. ..+..++..+..+...|+.++|...|++|+.. |... .....++.. .++... .+
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~ 273 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGE 273 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhc
Confidence 45678899999885 47889999999999999999999999999999 4432 000000110 111110 00
Q ss_pred -------C--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhcCCCccccHHHHHHHHHH
Q 020091 189 -------A--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKR 257 (331)
Q Consensus 189 -------~--~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 257 (331)
. .....+...+..... .++.+.|...|.+| ... ....+...+.+-.. ..++.+.|...|++
T Consensus 274 ~~~~~~~~~~~~~~lw~~y~~~~~r----~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~---~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 274 AESAEKVFSKELDLLRINHLNYVLK----KRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYY---ATGSRATPYNIFSS 345 (493)
T ss_dssp -------CHHHHHHHHHHHHHHHHH----HHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHH---HHCCSHHHHHHHHH
T ss_pred cchhhhhcccccHHHHHHHHHHHHH----cCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHH---HCCChHHHHHHHHH
Confidence 0 012344555555544 35689999999999 432 23333333433322 12378999999999
Q ss_pred HHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 020091 258 AADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELA 290 (331)
Q Consensus 258 a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A 290 (331)
++.. +.++-+..++......|+.+.|...|+++
T Consensus 346 al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 346 GLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9875 34555556677777889999999999987
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.30 E-value=0.059 Score=40.45 Aligned_cols=70 Identities=9% Similarity=0.038 Sum_probs=58.1
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGST----LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~----~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
....+.|.++..+.+. ....+..+++..++.....+.+ +.+|.||..+++.|++++|..+++..++..|.
T Consensus 33 ~s~~~~F~yAw~Lv~S-~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRT-RYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp CCHHHHHHHHHHHTTS-SSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CcHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence 5789999999999871 2233445599999998887744 68899999999999999999999999998774
No 227
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.23 E-value=0.049 Score=41.68 Aligned_cols=85 Identities=11% Similarity=0.122 Sum_probs=67.7
Q ss_pred CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHc--CCHHHHH
Q 020091 226 GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH---GKAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADH 300 (331)
Q Consensus 226 ~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~--~~~~a~~ 300 (331)
-...+.|+++|++..... ..+..+++..++.....+. .+..|.||..+++.|+|++|..+.+..++. ++.+|..
T Consensus 37 vs~~t~F~YAw~Lv~S~~-~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTD-VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp SCHHHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 467888999999876443 6678899999998887543 567799999999999999999999999987 5677877
Q ss_pred HHHHHHhhhch
Q 020091 301 VKNVILQQLSA 311 (331)
Q Consensus 301 ~l~~~~~~l~~ 311 (331)
+...+...+.+
T Consensus 116 Lk~~Ie~~i~k 126 (144)
T 1y8m_A 116 LKSMVEDKIQK 126 (144)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77776665543
No 228
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.51 E-value=0.067 Score=42.10 Aligned_cols=117 Identities=10% Similarity=-0.026 Sum_probs=74.3
Q ss_pred CCCHHHHHHHHHHHHhC--CCH---------HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHH---HH
Q 020091 118 RKNLDKALDSFLKGAAR--GST---------LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVK---LL 183 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~---------~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~---~~ 183 (331)
.+-|+.|+-....++.. .++ .+++.+|..++..+++..|...|++|+.........+...-.+. -+
T Consensus 33 ~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~ 112 (167)
T 3ffl_A 33 AGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSAST 112 (167)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------------
T ss_pred hhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCC
Confidence 47888888888876543 223 37889999999999999999999999876332111111000000 00
Q ss_pred HHHHH-CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHH
Q 020091 184 YQASI-AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRA-AEGGYVRAMYNTSLCY 238 (331)
Q Consensus 184 ~~a~~-~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A-~~~~~~~a~~~lg~~y 238 (331)
....+ ....+..|.++.||.. .+++.+|+..++.. .+.-.+..-..||.+|
T Consensus 113 p~s~~~~~e~Elkykia~C~~~----l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 113 PQSQCLPSEIEVKYKLAECYTV----LKQDKDAIAILDGIPSRQRTPKINMLLANLY 165 (167)
T ss_dssp ----CCCCHHHHHHHHHHHHHH----TTCHHHHHHHHHTSCGGGCCHHHHHHHHHHC
T ss_pred cccccccchHHHHHHHHHHHHH----HCCHHHHHHHHhcCCchhcCHHHHHHHHHHh
Confidence 00001 1234677888888887 77888888887765 4456777777777776
No 229
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.06 E-value=0.31 Score=48.03 Aligned_cols=84 Identities=13% Similarity=0.056 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHH
Q 020091 189 AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQL 268 (331)
Q Consensus 189 ~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~ 268 (331)
..++..+.+||.++.. .++++.|+++|.++ ++......|-.. .++.++....-+.+...|.....+
T Consensus 678 ~~~~~~W~~la~~al~----~~~~~~A~~~y~~~---~d~~~l~~l~~~-------~~~~~~~~~~~~~a~~~~~~~~A~ 743 (814)
T 3mkq_A 678 ESAEMKWRALGDASLQ----RFNFKLAIEAFTNA---HDLESLFLLHSS-------FNNKEGLVTLAKDAETTGKFNLAF 743 (814)
T ss_dssp CCCHHHHHHHHHHHHH----TTCHHHHHHHHHHH---TCHHHHHHHHHH-------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hCcHhHHHHHHHHHHH----cCCHHHHHHHHHHc---cChhhhHHHHHH-------cCCHHHHHHHHHHHHHcCchHHHH
Confidence 3678899999999987 78999999999987 555554444333 225565555556666666554443
Q ss_pred HHHHHHhccCCHHHHHHHHHH
Q 020091 269 EHGLGLFTEGEMMKAVVYLEL 289 (331)
Q Consensus 269 ~Lg~~~~~~~~~~~A~~~~~~ 289 (331)
.+ +...|++++|++.|..
T Consensus 744 ~~---~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 744 NA---YWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HH---HHHHTCHHHHHHHHHH
T ss_pred HH---HHHcCCHHHHHHHHHH
Confidence 32 4457777777777643
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.04 E-value=0.096 Score=40.52 Aligned_cols=119 Identities=17% Similarity=0.109 Sum_probs=82.6
Q ss_pred HHHCCCHHHHHHHHHHHhcCCCCCCCH------HHHHHHHHHHHHCC----------CHHHHHHHHHHHhcCCCccccHH
Q 020091 186 ASIAGHVRAQYQLALCLHRGRGVDFNL------QEAARWYLRAAEGG----------YVRAMYNTSLCYSFGEGLPLSHR 249 (331)
Q Consensus 186 a~~~~~~~a~~~lg~~y~~G~g~~~d~------~~A~~~~~~A~~~~----------~~~a~~~lg~~y~~g~g~~~~~~ 249 (331)
.+.+.+++.+.......+. .+|. ++-++.|++|+..- ++.-+...+... . .+|.+
T Consensus 7 ~~~p~~yd~W~~yl~llE~----~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~-e----i~D~d 77 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEK----NSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELK-A----IQEPD 77 (161)
T ss_dssp ---CCSHHHHHHHHHHHHH----HTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHH-H----HHCGG
T ss_pred eeCCCCHHHHHHHHHHHHH----cCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH-H----hcCHH
Confidence 4556889999988888875 3555 77889999997642 223333333332 1 36999
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHhhhchhc
Q 020091 250 QARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE------TAADHVKNVILQQLSATS 313 (331)
Q Consensus 250 ~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~------~~a~~~l~~~~~~l~~~~ 313 (331)
+|...|+.+... ..+..+...|..-..+|+..+|.+.+.+|+..++ +.|..|+.....++...+
T Consensus 78 ~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~~~~~~l~~~e 149 (161)
T 4h7y_A 78 DARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLNLQKKQLLSEE 149 (161)
T ss_dssp GCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHHTTCSCSSCTT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhhcCCCeecccc
Confidence 999999999765 3455666667766779999999999999999987 556666665555554443
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.93 E-value=0.41 Score=36.58 Aligned_cols=71 Identities=1% Similarity=-0.124 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
...+.+.|+++.++... ....|..+++..++.....+ .-+.+|.||..+++.|++++|..+.+..++..|.
T Consensus 36 ~vs~~t~F~YAw~Lv~S-~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKS-TDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHS-SSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 45788899998887762 12445668999999888653 5688999999999999999999999999999774
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.76 E-value=0.26 Score=37.16 Aligned_cols=72 Identities=1% Similarity=-0.123 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC
Q 020091 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPA 170 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~ 170 (331)
...+.+.|+++.+..+. ....|..+++..++.....+ .-+.+|.||..+++.|++++|..+.+..++..|.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S-~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKS-TDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCChhhHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 34678888888777662 12446678999999888754 46789999999999999999999999999987743
No 233
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.54 E-value=0.34 Score=45.39 Aligned_cols=63 Identities=13% Similarity=0.117 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 103 a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
.+..||++.+. ...+..|..||.+|+... +...+..||.+....++.-+|+-+|.+++....|
T Consensus 154 ~l~~LGDL~RY----~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~P 218 (497)
T 1ya0_A 154 CLVHLGDIARY----RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218 (497)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC
T ss_pred HHHHcccHHHH----HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCC
Confidence 45667888877 567788888888888763 6677888888888888888888888887765443
No 234
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.53 E-value=2.6 Score=41.35 Aligned_cols=80 Identities=15% Similarity=0.008 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHH
Q 020091 119 KNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQL 198 (331)
Q Consensus 119 ~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 198 (331)
++++.|.+.. -...++..+..||..+...++++.|+.+|.++ +|+..+..+|.. .++.+....+
T Consensus 666 ~~~~~A~~~~---~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~----------~d~~~l~~l~~~---~~~~~~~~~~ 729 (814)
T 3mkq_A 666 GQLTLARDLL---TDESAEMKWRALGDASLQRFNFKLAIEAFTNA----------HDLESLFLLHSS---FNNKEGLVTL 729 (814)
T ss_dssp TCHHHHHHHH---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH----------TCHHHHHHHHHH---TTCHHHHHHH
T ss_pred CCHHHHHHHH---HhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc----------cChhhhHHHHHH---cCCHHHHHHH
Confidence 5666666553 34467888999999999999999999999875 234444444433 3444444455
Q ss_pred HHHHhcCCCCCCCHHHHHHH
Q 020091 199 ALCLHRGRGVDFNLQEAARW 218 (331)
Q Consensus 199 g~~y~~G~g~~~d~~~A~~~ 218 (331)
+.+... .+++..|...
T Consensus 730 ~~~a~~----~~~~~~A~~~ 745 (814)
T 3mkq_A 730 AKDAET----TGKFNLAFNA 745 (814)
T ss_dssp HHHHHH----TTCHHHHHHH
T ss_pred HHHHHH----cCchHHHHHH
Confidence 544443 3444444444
No 235
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.18 E-value=4.3 Score=36.66 Aligned_cols=90 Identities=19% Similarity=0.064 Sum_probs=65.8
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc-----
Q 020091 195 QYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----- 261 (331)
Q Consensus 195 ~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----- 261 (331)
-..||.+|.. .+++.+|.+.+.+..+. ++ .+.+..-..+|.. .+|..++...|.+|...
T Consensus 102 ~~kL~~l~~~----~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~----~~n~~k~k~~l~~a~~~~~ai~ 173 (394)
T 3txn_A 102 EARLIALYFD----TALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHA----LSNLPKARAALTSARTTANAIY 173 (394)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHH----hhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhhccCC
Confidence 3488999987 88999999999988652 33 2334455556655 45999999999998543
Q ss_pred CCHHHH----HHHHHHHh-ccCCHHHHHHHHHHHHH
Q 020091 262 GHGKAQ----LEHGLGLF-TEGEMMKAVVYLELATR 292 (331)
Q Consensus 262 ~~~~a~----~~Lg~~~~-~~~~~~~A~~~~~~A~~ 292 (331)
.++..+ ..-|.++. ..++|.+|..+|-.+.+
T Consensus 174 ~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 174 CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 234322 34688888 89999999999988864
No 236
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=92.96 E-value=0.51 Score=44.24 Aligned_cols=76 Identities=22% Similarity=0.166 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 020091 139 AMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARW 218 (331)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~ 218 (331)
.+..||.+.........|..||.+|+...|. +...++.||.+... .++.-+|+-+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~---------------------~G~~~nqLavla~~----~~~~l~a~y~ 208 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPS---------------------NGQPYNQLAILASS----KGDHLTTIFY 208 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------------BSHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCC---------------------CCchHHHHHHHHhc----ccccHHHHHH
Confidence 4568899988888889999999999988774 56666667766654 4566666666
Q ss_pred HHHHHHC--CCHHHHHHHHHHHh
Q 020091 219 YLRAAEG--GYVRAMYNTSLCYS 239 (331)
Q Consensus 219 ~~~A~~~--~~~~a~~~lg~~y~ 239 (331)
|.+++.. ..+.|..+|...+.
T Consensus 209 y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 209 YCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCChhHHHHHHHHHH
Confidence 6666432 45555556655553
No 237
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.72 E-value=3.1 Score=33.04 Aligned_cols=42 Identities=21% Similarity=0.145 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 020091 119 KNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQA 163 (331)
Q Consensus 119 ~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 163 (331)
||++.|.+..+. .++..-|..||..-...|+++-|+.+|+++
T Consensus 19 g~l~~A~e~a~~---l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 19 GNLDAALDEAKK---LNDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp TCHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHH---hCCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 555555555332 245555556666655555555555555553
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.23 E-value=1.1 Score=34.60 Aligned_cols=100 Identities=10% Similarity=0.048 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCH------HHHHHHHHHHHhCCCH----------HHHHHHHHHHhcCCCHHHHHHHHH
Q 020091 98 LREAMVLLRWGKRFKHGRGVRKNL------DKALDSFLKGAARGST----------LAMVDAGLMYWEMDKKEAAISLYR 161 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~~~------~~A~~~~~~A~~~~~~----------~a~~~lg~~~~~~~~~~~A~~~~~ 161 (331)
..+++.++..-..... .+|. ++-++.|++|+..=.| .-+...+.. ...+|.++|...|+
T Consensus 10 p~~yd~W~~yl~llE~----~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~ 84 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEK----NSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQ 84 (161)
T ss_dssp CCSHHHHHHHHHHHHH----HTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHH
T ss_pred CCCHHHHHHHHHHHHH----cCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHH
Confidence 3567777666666655 4555 6666777777653211 112222222 22255555555555
Q ss_pred HHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC
Q 020091 162 QAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY 227 (331)
Q Consensus 162 ~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~ 227 (331)
.++.... ..+..+...+..-.+ +++..+|.+.+.+|+..+.
T Consensus 85 ~a~~~hK---------------------kFAKiwi~~AqFEiR----qgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 85 MARANCK---------------------KFAFVHISFAQFELS----QGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHHHCT---------------------TBHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhH---------------------HHHHHHHHHHHHHHH----cccHHHHHHHHHHHhccCC
Confidence 5554411 344444444444444 5677777777777776543
No 239
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.22 E-value=4.7 Score=31.97 Aligned_cols=83 Identities=11% Similarity=-0.108 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHHH
Q 020091 190 GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLE 269 (331)
Q Consensus 190 ~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~ 269 (331)
++..-|..||..... .+|++-|.++|+++ ++...+..|-.+- +|.++=...-+.|...|+....+.
T Consensus 32 ~~~~~Wk~Lg~~AL~----~gn~~lAe~cy~~~---~D~~~L~~Ly~~t-------g~~e~L~kla~iA~~~g~~n~af~ 97 (177)
T 3mkq_B 32 NDSITWERLIQEALA----QGNASLAEMIYQTQ---HSFDKLSFLYLVT-------GDVNKLSKMQNIAQTREDFGSMLL 97 (177)
T ss_dssp CCHHHHHHHHHHHHH----TTCHHHHHHHHHHT---TCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHH----cCChHHHHHHHHHh---CCHHHHHHHHHHh-------CCHHHHHHHHHHHHHCccHHHHHH
Confidence 678889999998876 78999999999987 5666655554443 266666666667767776665554
Q ss_pred HHHHHhccCCHHHHHHHHHH
Q 020091 270 HGLGLFTEGEMMKAVVYLEL 289 (331)
Q Consensus 270 Lg~~~~~~~~~~~A~~~~~~ 289 (331)
. ++..|++++++..|.+
T Consensus 98 ~---~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 98 N---TFYNNSTKERSSIFAE 114 (177)
T ss_dssp H---HHHHTCHHHHHHHHHH
T ss_pred H---HHHcCCHHHHHHHHHH
Confidence 3 4457888888888744
No 240
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.83 E-value=15 Score=37.11 Aligned_cols=68 Identities=13% Similarity=0.153 Sum_probs=35.4
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh---CCC----HHHHHHHHHHHhcCCCHHHHHHHHHH
Q 020091 90 SWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA---RGS----TLAMVDAGLMYWEMDKKEAAISLYRQ 162 (331)
Q Consensus 90 ~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~---~~~----~~a~~~lg~~~~~~~~~~~A~~~~~~ 162 (331)
.|+-+..+.+...+...||.++ .++.++++..+.+-.. .++ ..|++-||.++...++ +++.++..
T Consensus 365 ~Wl~k~~~~~k~sA~aSLGlIh------~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--~~~~lL~~ 436 (963)
T 4ady_A 365 PWLGKAQNWAKFTATASLGVIH------KGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--DTTDYLKN 436 (963)
T ss_dssp HHHHHCCTHHHHHHHHHHHHHT------SSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--HHHHHHHH
T ss_pred hhhhccchHHHHHHHHHhhhhc------cCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--HHHHHHHH
Confidence 4555544444455666677776 4455556666555443 222 2355566666544432 45555555
Q ss_pred HHH
Q 020091 163 AAV 165 (331)
Q Consensus 163 a~~ 165 (331)
.+.
T Consensus 437 ~L~ 439 (963)
T 4ady_A 437 IIV 439 (963)
T ss_dssp HHH
T ss_pred HHc
Confidence 443
No 241
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=87.69 E-value=2.9 Score=31.82 Aligned_cols=63 Identities=8% Similarity=0.042 Sum_probs=46.9
Q ss_pred cCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 020091 76 FTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAG 144 (331)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg 144 (331)
..+|.-++...++...+. ....+|..++.+|..|.. .++..+|.+++.+|++.|..+|+.+.-
T Consensus 102 v~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~K----lg~~r~a~eLl~~AC~kG~kEAC~~in 164 (172)
T 1wy6_A 102 VIQGKRDKLEEIGREILK--NNEVSASILVAIANALRR----VGDERDATTLLIEACKKGEKEACNAVN 164 (172)
T ss_dssp HHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHH----hcchhhHHHHHHHHHHhhhHHHHHHHH
Confidence 345666666555544322 223468999999999999 899999999999999999999987653
No 242
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.34 E-value=20 Score=31.15 Aligned_cols=64 Identities=13% Similarity=0.132 Sum_probs=43.0
Q ss_pred hHHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh----CCCHHHH
Q 020091 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA----RGSTLAM 140 (331)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~----~~~~~a~ 140 (331)
....+.+....+..|++-+|.+.++. +..-|.. .+++++|++.+...+. .|...+-
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rt----------------l~~Ry~~----~~~~~eAidlL~~ga~~ll~~~Q~~sa 72 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRT----------------IANRYVR----SKSYEHAIELISQGALSFLKAKQGGSG 72 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHH----------------HHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHH----------------HHHHHHH----hcCHHHHHHHHHHHHHHHHHCCCcchH
Confidence 44567777778888999999655442 3334445 6889999999887653 4666666
Q ss_pred HHHHHHHh
Q 020091 141 VDAGLMYW 148 (331)
Q Consensus 141 ~~lg~~~~ 148 (331)
..|+..+.
T Consensus 73 ~DLa~llv 80 (312)
T 2wpv_A 73 TDLIFYLL 80 (312)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665553
No 243
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=83.84 E-value=11 Score=27.67 Aligned_cols=36 Identities=8% Similarity=-0.077 Sum_probs=20.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 020091 127 SFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQA 163 (331)
Q Consensus 127 ~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 163 (331)
...+...+|.+......+....-. +.++|+.|+..-
T Consensus 11 ~v~~l~~MGFp~~~~~kAl~~~g~-~~e~amewL~~h 46 (118)
T 4ae4_A 11 CVETVVNMGYSYECVLRAMKAAGA-NIEQILDYLFAH 46 (118)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHCc-CHHHHHHHHHHh
Confidence 344555666666666665444333 666666666543
No 244
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=81.96 E-value=11 Score=29.72 Aligned_cols=139 Identities=11% Similarity=0.022 Sum_probs=84.2
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYW 148 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~ 148 (331)
+-+....+.-.+++.+.-+..-+... .++--..++++..- .|.+..+.-.+ ...+...+.+.-..||.
T Consensus 6 ~~kI~Ks~kY~dYdt~~fLsa~L~~~-----~~eY~lL~~I~Lyy----ngEY~R~Lf~L---~~lNT~Ts~YYk~LCy~ 73 (242)
T 3kae_A 6 IGKICKSIRYRDYETAIFLAACLLPC-----KPEYRMLMSIVLYL----NGEYTRALFHL---HKLNTCTSKYYESLCYK 73 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---------CTHHHHHHHHHH----TTCHHHHHHHH---HTCCBHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHccC-----ChHHHhhhhhhhhh----cchHhHHHHHH---HhcchHHHHHHHHHHHH
Confidence 33444455556777664332222221 22223334555554 68888776554 56788889999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHH-HHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC
Q 020091 149 EMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQY-QLALCLHRGRGVDFNLQEAARWYLRAAEGGY 227 (331)
Q Consensus 149 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~-~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~ 227 (331)
..+|+.+|+..+++.++-.-... .|.+--+..+ -+++++.+-.+ -+|.++.+ .++.++|+.+|..+-....
T Consensus 74 klKdYkkA~~~le~il~~kvd~d--~~~d~~~~~f--fvd~~DkEfFy~l~a~lltq----~g~r~EaI~y~~~Sf~~~~ 145 (242)
T 3kae_A 74 KKKDYKKAIKSLESILEGKVERD--PDVDARIQEM--FVDPGDEEFFESLLGDLCTL----SGYREEGIGHYVRSFGKSF 145 (242)
T ss_dssp HTTCHHHHHHHHHHHHTTCSBCC--CCCCHHHHTT--SCCTTCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhcccccC--ccccccccee--eeccchHHHHHHHHHHHHHH----hcCHHHhhhHhhhhcCCcc
Confidence 99999999999999985422211 1111111111 12345665544 47777776 7899999999999866543
No 245
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.02 E-value=35 Score=29.90 Aligned_cols=62 Identities=13% Similarity=0.119 Sum_probs=41.0
Q ss_pred HHHHHHHHhccCCchH---HHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH----hCCCHH
Q 020091 66 FDVLNKIAASFTLPQL---RAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGA----ARGSTL 138 (331)
Q Consensus 66 ~~~~~~~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~----~~~~~~ 138 (331)
...+.+....+..|++ -+|.+.++. +..-|.. .+++++|++.+...+ +.|...
T Consensus 13 ~~~i~rl~~~I~~G~y~~~YEAHQ~~RT----------------i~~Ry~~----~k~y~eAidLL~~GA~~ll~~~Q~~ 72 (336)
T 3lpz_A 13 ERIIARLQRRIAEGQPEEQYEAAQETRL----------------VAARYSK----QGNWAAAVDILASVSQTLLRSGQGG 72 (336)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHH----------------HHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCCCCccccHHHHHHHH----------------HHHHHHh----hcCHHHHHHHHHHHHHHHHHCCCcc
Confidence 3456777777888998 788544432 2333455 689999999888765 346666
Q ss_pred HHHHHHHHH
Q 020091 139 AMVDAGLMY 147 (331)
Q Consensus 139 a~~~lg~~~ 147 (331)
+-..|+.++
T Consensus 73 sg~DL~~ll 81 (336)
T 3lpz_A 73 SGGDLAVLL 81 (336)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 666666554
No 246
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=77.78 E-value=2.2 Score=29.19 Aligned_cols=31 Identities=29% Similarity=0.148 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHH
Q 020091 154 EAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASI 188 (331)
Q Consensus 154 ~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~ 188 (331)
++|+.+..+|++.+ ..+++++|+.+|..+++
T Consensus 17 ~~Ai~lv~~Ave~D----~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 17 EMARKYAINAVKAD----KEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HhccHHHHHHHHHHHHH
Confidence 44455555554443 34455555555555444
No 247
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=77.13 E-value=2.4 Score=29.03 Aligned_cols=31 Identities=16% Similarity=0.080 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHH
Q 020091 154 EAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASI 188 (331)
Q Consensus 154 ~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~ 188 (331)
++|+.+..+|++.+ ..+++++|+.+|..+++
T Consensus 9 ~~Ai~lv~~Ave~D----~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 9 DMARKYAILAVKAD----KEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HhccHHHHHHHHHHHHH
Confidence 35555555555543 34555555555555554
No 248
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=75.74 E-value=5.4 Score=27.25 Aligned_cols=32 Identities=25% Similarity=0.253 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 020091 248 HRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 248 ~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
.++|+.+..+|++ ....|++++|+.+|..|++
T Consensus 16 ~~~Ai~lv~~Ave-------------~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 16 EEMARKYAINAVK-------------ADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHH-------------HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------------HHHhccHHHHHHHHHHHHH
Confidence 4556666666644 4667888888888888876
No 249
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.42 E-value=7.1 Score=35.62 Aligned_cols=95 Identities=11% Similarity=0.025 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CC-HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc----
Q 020091 191 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GY-VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC---- 261 (331)
Q Consensus 191 ~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~~-~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---- 261 (331)
...+...+|..|.. .||+++|.+.|.++.+. ++ ...+..+-.++.. .+|+..+..++.++-..
T Consensus 130 ~~~~~~~la~~~~~----~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~----~~d~~~~~~~~~ka~~~~~~~ 201 (429)
T 4b4t_R 130 QAQAWINLGEYYAQ----IGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFF----YNDQLYVKEKLEAVNSMIEKG 201 (429)
T ss_dssp CSSCCHHHHHHHHH----HCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhhhcC
Confidence 35678899999987 78999999999998653 22 4455555555554 45999999999998543
Q ss_pred CCHHHH----HHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 262 GHGKAQ----LEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 262 ~~~~a~----~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
+++... ..-|.++...++|.+|..+|-.+...
T Consensus 202 ~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 202 GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 455433 24566777899999999999877653
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=74.82 E-value=42 Score=34.77 Aligned_cols=180 Identities=12% Similarity=0.016 Sum_probs=97.9
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-------------------------CCHHHHHHHHHHHhcCCCH
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-------------------------GSTLAMVDAGLMYWEMDKK 153 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-------------------------~~~~a~~~lg~~~~~~~~~ 153 (331)
.++...|.+|.+|.. .+++++|.++|++|+.. +.+.-++.+..++.+.+-+
T Consensus 840 ~~~~~~yl~g~~~L~----~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~ 915 (1139)
T 4fhn_B 840 SDPIAVYLKALIYLK----SKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAY 915 (1139)
T ss_dssp CCHHHHHHHHHHHHH----TTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCC
T ss_pred CCcHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCH
Confidence 367788999999999 99999999999998632 1223345566666677888
Q ss_pred HHHHHHHHHHHHcCCCCCCccCHHHH--HHHHHHHHHCC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHH
Q 020091 154 EAAISLYRQAAVLGDPAAQPANAEEA--VKLLYQASIAG-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRA 230 (331)
Q Consensus 154 ~~A~~~~~~a~~~~~~~~~~~~~~~A--~~~~~~a~~~~-~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a 230 (331)
+.++++-+.|++..... ..+.... ...|+.+++.+ +.+|+.-|-..=.. ....+-=.++..+-++.+...-
T Consensus 916 ~~vi~fa~lAi~~~~~~--~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~----~~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 916 IDALEFSLLADASKETD--DEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT----PLKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHHHHHHCCSC--CHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS----SSCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHhccCC--ChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH----HHHHHHHHHHHHHHHhCCChhh
Confidence 88888888888764321 1111111 12345555554 34455444322211 1222222333344456666555
Q ss_pred HHHHHHHHhcCCCccccHHHHHHHHHHHH-HcCCHHHHHH-HHHHHhccCCHHHHH-HHHHHHHHc
Q 020091 231 MYNTSLCYSFGEGLPLSHRQARKWMKRAA-DCGHGKAQLE-HGLGLFTEGEMMKAV-VYLELATRA 293 (331)
Q Consensus 231 ~~~lg~~y~~g~g~~~~~~~A~~~~~~a~-~~~~~~a~~~-Lg~~~~~~~~~~~A~-~~~~~A~~~ 293 (331)
+..+- | .|.....+..+..--+.. ...+..-++. |-..+...||+.+|. ..|+++.+.
T Consensus 990 L~~lp--f---~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 990 LLNYS--M---PTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp HHHHT--T---TSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred hhCCC--C---ccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence 54432 1 233334555554444333 2233223333 333355567766555 557777654
No 251
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=74.55 E-value=5.9 Score=26.99 Aligned_cols=32 Identities=28% Similarity=0.335 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 020091 248 HRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 248 ~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
.++|+.+.++|++ ....|++++|+.+|..|++
T Consensus 8 ~~~Ai~lv~~Ave-------------~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 8 EDMARKYAILAVK-------------ADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHH-------------HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------------HHHhccHHHHHHHHHHHHH
Confidence 3456666666644 4667888888888888776
No 252
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=74.01 E-value=28 Score=27.89 Aligned_cols=78 Identities=10% Similarity=-0.048 Sum_probs=50.5
Q ss_pred HHHHHHHHHhCCCHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 020091 124 ALDSFLKGAARGSTLA-MVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALC 201 (331)
Q Consensus 124 A~~~~~~A~~~~~~~a-~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 201 (331)
-+..|.|++...+++| ++.|+.++..+.|..--..-+...+..+-..+.+.-...|+..++..-..|.|++...|+.+
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqa 88 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQA 88 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHH
Confidence 4556677777777764 56777776666566554444444444344444566677777777777777888888777754
No 253
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=73.95 E-value=44 Score=28.97 Aligned_cols=45 Identities=29% Similarity=0.231 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhCC-CHHHH---HHHHHHHhcCCCHHHHHHHHHHHHH
Q 020091 121 LDKALDSFLKGAARG-STLAM---VDAGLMYWEMDKKEAAISLYRQAAV 165 (331)
Q Consensus 121 ~~~A~~~~~~A~~~~-~~~a~---~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (331)
.++-+.=++..++.| .-+|+ ..+..-|.+.+++++|+.++...+.
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~ 61 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGAL 61 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 445555555555555 23333 2344555556777777777665543
No 254
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=73.88 E-value=27 Score=26.55 Aligned_cols=44 Identities=20% Similarity=0.153 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020091 263 HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVIL 306 (331)
Q Consensus 263 ~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~ 306 (331)
++.-.+.+|..|.+.|+..+|-..+.+|++.|-.+|+.+...+.
T Consensus 124 ~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~kEAC~~in~~~ 167 (172)
T 1wy6_A 124 SASILVAIANALRRVGDERDATTLLIEACKKGEKEACNAVNTLT 167 (172)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHTC-
T ss_pred ChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhHHHHHHHHhhh
Confidence 47788889999999999999999999999999999988766543
No 255
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=73.74 E-value=39 Score=34.63 Aligned_cols=120 Identities=11% Similarity=-0.027 Sum_probs=83.8
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC---CHH
Q 020091 195 QYQLALCLHRGRGVDFNLQEAARWYLRAAEG------GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG---HGK 265 (331)
Q Consensus 195 ~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~------~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 265 (331)
+..|=..|.. .++.++|...|....+. -+...++.|-..|.. .++.++|.+.|++-.+.| +..
T Consensus 130 ynaLIdglcK----~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck----~G~~~eA~~Lf~eM~~~G~~PDvv 201 (1134)
T 3spa_A 130 LLAFFKCCLL----TDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR----QGAFKELVYVLFMVKDAGLTPDLL 201 (1134)
T ss_dssp HHHHHHHHHH----HTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHh----CCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCcHH
Confidence 3444444443 67899999999765432 377788888777765 559999999999998875 456
Q ss_pred HHHHHHHHHhccCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhh
Q 020091 266 AQLEHGLGLFTEGE-MMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWR 325 (331)
Q Consensus 266 a~~~Lg~~~~~~~~-~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~ 325 (331)
.+..|-.++...|+ .++|...++...+.|-.-....+ -..+...+++.....++++.
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY---~~ll~~~eR~~vL~~Vrkv~ 259 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFT---AVLLSEEDRATVLKAVHKVK 259 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHH---HSCCCHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhc---ccccChhhHHHHHHHHHHhC
Confidence 67777777888887 57899999999998853222221 22345666666666666653
No 256
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.31 E-value=55 Score=29.81 Aligned_cols=204 Identities=12% Similarity=0.039 Sum_probs=108.9
Q ss_pred ccccCCChHHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCC----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Q 020091 58 GHDFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLR----EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA 133 (331)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~ 133 (331)
..|++....+.+..+ ..+..+++.+|+..+..+.+...... ...++..+-.++.. .++++...+++.....
T Consensus 10 e~D~s~~~~~~~~~~-~~l~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~----~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 10 DKDYSQILKEEFPKI-DSLAQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLAS----RNKWDDLNEQLTLLSK 84 (445)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHH----HSCHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHH----hccHHHHHHHHHHHHH
Confidence 345544333333333 33456889999888776666543222 35667777788888 7899888887765543
Q ss_pred C-C-CHHHH---HHHHHHHhc-CCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCC-------CHHHHHHHHH
Q 020091 134 R-G-STLAM---VDAGLMYWE-MDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAG-------HVRAQYQLAL 200 (331)
Q Consensus 134 ~-~-~~~a~---~~lg~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~~~a~~~lg~ 200 (331)
. | ...+. .+...-+.. ..+.+.. .....++.-. .+..| .+.....|+.
T Consensus 85 kr~qlk~ai~~~V~~~~~~l~~~~~~d~~--~~~~~i~~l~-----------------~vte~kiflE~erarl~~~La~ 145 (445)
T 4b4t_P 85 KHGQLKLSIQYMIQKVMEYLKSSKSLDLN--TRISVIETIR-----------------VVTENKIFVEVERARVTKDLVE 145 (445)
T ss_dssp TTTTSHHHHHHHHHHHHHHHHHHCTTHHH--HHHHHHHCCS-----------------SSSSCCCCCCHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHhcCCchhHH--HHHHHHHHHH-----------------HHhccchHHHHHHHHHHHHHHH
Confidence 3 2 12221 111111111 0110000 0001110000 00011 2334567999
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHH-C-C--C----HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHH----c-CCHHH-
Q 020091 201 CLHRGRGVDFNLQEAARWYLRAAE-G-G--Y----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD----C-GHGKA- 266 (331)
Q Consensus 201 ~y~~G~g~~~d~~~A~~~~~~A~~-~-~--~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~----~-~~~~a- 266 (331)
+|.. .+++.+|...+..... . + + ...+.....+|.. .+|+.+|...++++-. . .++..
T Consensus 146 i~e~----~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~----~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 146 IKKE----EGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL----KGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHH----HTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHH----ccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 9987 7899999999988742 1 1 1 3344555555655 5599999999998742 1 33332
Q ss_pred ---HHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 267 ---QLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 267 ---~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
+...|.++...++|.+|..+|..+.+.
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 245688888899999999999988753
No 257
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=71.85 E-value=72 Score=30.54 Aligned_cols=77 Identities=14% Similarity=0.098 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHC-CC-HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHH
Q 020091 212 LQEAARWYLRAAEG-GY-VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYL 287 (331)
Q Consensus 212 ~~~A~~~~~~A~~~-~~-~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~ 287 (331)
..++..|+.++... .+ ......++..+. .+|.+.|..||.+.... ....+.|.+|..+...|+.++|..+|
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr-----~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~ 342 (618)
T 1qsa_A 268 TDEQAKWRDDAIMRSQSTSLIERRVRMALG-----TGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEIL 342 (618)
T ss_dssp CHHHHHHHHHHHHTCCCHHHHHHHHHHHHH-----HTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHhccccCCChHHHHHHHHHHHH-----CCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHH
Confidence 56777777765443 22 223344444442 23888888888775433 35677888888888888888888888
Q ss_pred HHHHHc
Q 020091 288 ELATRA 293 (331)
Q Consensus 288 ~~A~~~ 293 (331)
++++..
T Consensus 343 ~~~a~~ 348 (618)
T 1qsa_A 343 HQLMQQ 348 (618)
T ss_dssp HHHHTS
T ss_pred HHHhcC
Confidence 888763
No 258
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=70.65 E-value=15 Score=32.81 Aligned_cols=60 Identities=3% Similarity=-0.248 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 020091 229 RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKAQLEHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 229 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
.+...++..+.. ..++.+++.+++..+... +..++..|-.+|+..|+..+|+..|++..+
T Consensus 172 ~a~~~~~~~~l~----~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 172 LAHTAKAEAEIA----CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555544 338888888888877663 456777777788888999999888887654
No 259
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=69.79 E-value=33 Score=33.72 Aligned_cols=116 Identities=9% Similarity=-0.046 Sum_probs=72.5
Q ss_pred Cch-HHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----------CCHH--------
Q 020091 78 LPQ-LRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----------GSTL-------- 138 (331)
Q Consensus 78 ~~~-~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----------~~~~-------- 138 (331)
.++ ++.+..++..+.+..+. ...++....+..-- ....+.-+|+..+.++++. .+..
T Consensus 261 t~~~~~~a~~~le~L~~~~p~---~~~~~~~~~i~~~~-~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 336 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPI---HDIYYKTAMITILD-HIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCM 336 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGG---GHHHHHHHHHHHHT-TCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCc---hhHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcc
Confidence 344 45677777777666432 33443333332210 0134567788888777632 1221
Q ss_pred --HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 020091 139 --AMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAA 216 (331)
Q Consensus 139 --a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~ 216 (331)
-+..-+..+...++++-|+.+-++|+...| ..-..|+.|+.+|.. .+|++.|+
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP---------------------seF~tW~~La~vYi~----l~d~e~AL 391 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELAL---------------------DSFESWYNLARCHIK----KEEYEKAL 391 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---------------------SCHHHHHHHHHHHHH----TTCHHHHH
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCc---------------------hhhHHHHHHHHHHHH----hccHHHHH
Confidence 112224445556788888888888777766 579999999999987 89999999
Q ss_pred HHHHHH
Q 020091 217 RWYLRA 222 (331)
Q Consensus 217 ~~~~~A 222 (331)
--++..
T Consensus 392 LtLNSc 397 (754)
T 4gns_B 392 FAINSM 397 (754)
T ss_dssp HHHHHS
T ss_pred HHHhcC
Confidence 877754
No 260
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=69.79 E-value=4.4 Score=28.32 Aligned_cols=15 Identities=13% Similarity=0.313 Sum_probs=7.0
Q ss_pred CCCHHHHHHHHHHHH
Q 020091 150 MDKKEAAISLYRQAA 164 (331)
Q Consensus 150 ~~~~~~A~~~~~~a~ 164 (331)
.+++++|+.+|..++
T Consensus 28 ~g~y~eAl~~Y~~Ai 42 (93)
T 1wfd_A 28 ESRYQQALVCYQEGI 42 (93)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHH
Confidence 344555555444433
No 261
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=68.01 E-value=35 Score=33.56 Aligned_cols=45 Identities=9% Similarity=-0.085 Sum_probs=39.6
Q ss_pred ccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 020091 246 LSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELA 290 (331)
Q Consensus 246 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A 290 (331)
++++-|+.+.++|+.. ..-..|+.|+.+|...|+++.|+-.+...
T Consensus 351 ~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 351 GDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4999999999999987 45789999999999999999999776544
No 262
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=67.37 E-value=12 Score=26.12 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=19.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 020091 247 SHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 247 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
-.++|+.++.+|++ ....|++++|+.+|..|++
T Consensus 11 ~l~~Ai~lv~~Ave-------------~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 11 DSTAAVAVLKRAVE-------------LDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHHHHH-------------HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------------HHHhCCHHHHHHHHHHHHH
Confidence 44566666666644 3456666666666666665
No 263
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=65.69 E-value=32 Score=27.88 Aligned_cols=80 Identities=11% Similarity=-0.026 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhCCCHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 020091 122 DKALDSFLKGAARGSTLA-MVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLAL 200 (331)
Q Consensus 122 ~~A~~~~~~A~~~~~~~a-~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 200 (331)
=.-+..|.|++...+++| ++.|+.++..|.|..--..-+...+.-+-..+.+.-...|+..++..-..|.|++...|+.
T Consensus 36 Yd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laq 115 (213)
T 3ctd_A 36 FDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLFFLSQ 115 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 345666677777777764 5677777655556654444444444333444455666677777777667788887777765
Q ss_pred H
Q 020091 201 C 201 (331)
Q Consensus 201 ~ 201 (331)
+
T Consensus 116 a 116 (213)
T 3ctd_A 116 A 116 (213)
T ss_dssp H
T ss_pred H
Confidence 4
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.03 E-value=9.5 Score=34.76 Aligned_cols=97 Identities=12% Similarity=0.122 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----C-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccC
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G-STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPAN 175 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~-~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 175 (331)
..+...||.+|.. .||+++|.+.|.+.-.. + -.+.+..+-.++...+|+..+..++.++.......
T Consensus 131 ~~~~~~la~~~~~----~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~----- 201 (429)
T 4b4t_R 131 AQAWINLGEYYAQ----IGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG----- 201 (429)
T ss_dssp SSCCHHHHHHHHH----HCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC-----
Confidence 4578889999999 89999999999987643 3 34566666677777789999988888886542211
Q ss_pred HHHHHHHHHHHHHCCCHHH----HHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 176 AEEAVKLLYQASIAGHVRA----QYQLALCLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 176 ~~~A~~~~~~a~~~~~~~a----~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
+++.. ....|.++.. .++|.+|..+|..+..
T Consensus 202 --------------~d~~~~~~lk~~~gl~~l~----~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 202 --------------GDWERRNRYKTYYGIHCLA----VRNFKEAAKLLVDSLA 236 (429)
T ss_dssp --------------CCTHHHHHHHHHHHHGGGG----TSCHHHHHHHHHHHHH
T ss_pred --------------CCHHHHHHHHHHHHHHHHH----hChHHHHHHHHHHHhc
Confidence 12211 2233444443 5777777777777654
No 265
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=63.44 E-value=7.2 Score=26.62 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=5.9
Q ss_pred CCHHHHHHHHHHH
Q 020091 151 DKKEAAISLYRQA 163 (331)
Q Consensus 151 ~~~~~A~~~~~~a 163 (331)
|++++|+.+|..+
T Consensus 27 g~y~eAl~~Y~~a 39 (85)
T 2v6x_A 27 TQYEEAYTAYYNG 39 (85)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 4444444444443
No 266
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=62.73 E-value=6.2 Score=28.90 Aligned_cols=14 Identities=36% Similarity=0.591 Sum_probs=7.3
Q ss_pred CCHHHHHHHHHHHH
Q 020091 151 DKKEAAISLYRQAA 164 (331)
Q Consensus 151 ~~~~~A~~~~~~a~ 164 (331)
+++++|+.+|..++
T Consensus 32 g~y~eAl~lY~~Ai 45 (117)
T 2cpt_A 32 GNYEEALQLYQHAV 45 (117)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 55555555554443
No 267
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=60.97 E-value=27 Score=35.70 Aligned_cols=92 Identities=13% Similarity=0.001 Sum_probs=65.4
Q ss_pred HHHHHHHHHhcCCCccccHHHHHHHHHHHHHc------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 020091 230 AMYNTSLCYSFGEGLPLSHRQARKWMKRAADC------GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKN 303 (331)
Q Consensus 230 a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~ 303 (331)
.+..|-..|.. .++.++|...|..-... -+...++.|-..|.+.|++++|...|++..+.|-......+.
T Consensus 129 TynaLIdglcK----~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 129 RLLAFFKCCLL----TDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHH----HTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHh----CCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 34555555554 45999999999764432 367888888889999999999999999999988544444444
Q ss_pred HHHhhhch-hc-HHHHHHHHHhhh
Q 020091 304 VILQQLSA-TS-RDRAMLVVDSWR 325 (331)
Q Consensus 304 ~~~~~l~~-~~-~~~a~~~~~~~~ 325 (331)
.++..+-+ +. .++|.+++++..
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~ 228 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMS 228 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHH
Confidence 55544444 33 367777887754
No 268
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=60.90 E-value=15 Score=25.10 Aligned_cols=34 Identities=24% Similarity=0.232 Sum_probs=22.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 247 SHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 247 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
...+|+.+..+|++ ....|++++|+.+|..|++.
T Consensus 12 ~~~~A~~lv~~Ave-------------~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 12 QSTAAATVLKRAVE-------------LDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHH-------------HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------------HHHcCCHHHHHHHHHHHHHH
Confidence 44556666666654 35677888888888877763
No 269
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=60.84 E-value=32 Score=27.68 Aligned_cols=79 Identities=15% Similarity=0.025 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhCCCHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 020091 122 DKALDSFLKGAARGSTLA-MVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLAL 200 (331)
Q Consensus 122 ~~A~~~~~~A~~~~~~~a-~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 200 (331)
=.-+..|.|++...+++| ++.|+.++..| |..--..-+...+..+-..+.+.-...|+..++..-..|.|++...|+.
T Consensus 15 Yd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laq 93 (204)
T 2r9g_A 15 YDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLAD 93 (204)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 445666777777777764 56777777666 6554444333333333333445555666666666666677777777665
Q ss_pred H
Q 020091 201 C 201 (331)
Q Consensus 201 ~ 201 (331)
+
T Consensus 94 a 94 (204)
T 2r9g_A 94 V 94 (204)
T ss_dssp H
T ss_pred H
Confidence 3
No 270
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=60.45 E-value=61 Score=25.60 Aligned_cols=83 Identities=14% Similarity=-0.003 Sum_probs=61.1
Q ss_pred ccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-------------------C
Q 020091 75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-------------------G 135 (331)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-------------------~ 135 (331)
++-.|.+..++ -++.. .+...+.|.-..||.. .+|+.+|+..++..+.. +
T Consensus 43 LyyngEY~R~L----f~L~~---lNT~Ts~YYk~LCy~k----lKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~ 111 (242)
T 3kae_A 43 LYLNGEYTRAL----FHLHK---LNTCTSKYYESLCYKK----KKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPG 111 (242)
T ss_dssp HHHTTCHHHHH----HHHHT---CCBHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTT
T ss_pred hhhcchHhHHH----HHHHh---cchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcccccCcccccccceeeeccc
Confidence 45567777663 22222 4678888888999999 99999999999999832 2
Q ss_pred CHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 020091 136 STL-AMVDAGLMYWEMDKKEAAISLYRQAAVLGD 168 (331)
Q Consensus 136 ~~~-a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~ 168 (331)
+.+ ....+|.++...|+.++|+.+|..+-...+
T Consensus 112 DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~ 145 (242)
T 3kae_A 112 DEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSF 145 (242)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcc
Confidence 333 345688888888999999999988766543
No 271
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=59.10 E-value=40 Score=30.02 Aligned_cols=57 Identities=9% Similarity=0.005 Sum_probs=38.1
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 020091 104 LLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (331)
Q Consensus 104 ~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (331)
...+...+.. .+++.+|+..++.++... +-.++..|-.++...|+..+|+..|++..
T Consensus 174 ~~~~~~~~l~----~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 174 HTAKAEAEIA----CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555555 677777777777776654 55566666667777777777777776654
No 272
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=58.99 E-value=18 Score=24.48 Aligned_cols=33 Identities=15% Similarity=0.015 Sum_probs=20.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 020091 247 SHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 247 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
..++|..+..+|++ ....|++++|+.+|..|++
T Consensus 9 ~l~~A~~l~~~Av~-------------~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 9 FLTKGIELVQKAID-------------LDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHHHHHH-------------HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------------HHHcCCHHHHHHHHHHHHH
Confidence 34556666665542 3456777777777777765
No 273
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=58.71 E-value=9.2 Score=26.25 Aligned_cols=16 Identities=13% Similarity=0.252 Sum_probs=7.2
Q ss_pred cCCCHHHHHHHHHHHH
Q 020091 149 EMDKKEAAISLYRQAA 164 (331)
Q Consensus 149 ~~~~~~~A~~~~~~a~ 164 (331)
..|++++|+.+|..++
T Consensus 28 ~~g~y~eAl~lY~~Ai 43 (86)
T 4a5x_A 28 SESRYPQALVCYQEGI 43 (86)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 3344444444444433
No 274
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=58.61 E-value=14 Score=27.00 Aligned_cols=32 Identities=19% Similarity=0.152 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 020091 248 HRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 248 ~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
.++|+.++.+|++ ....+++++|+.+|..|++
T Consensus 15 l~kAi~lv~~Ave-------------~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 15 LQKAIDLASKAAQ-------------EDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHHH-------------HHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------------HHHccCHHHHHHHHHHHHH
Confidence 5566666666643 3445677777777766665
No 275
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=55.53 E-value=67 Score=24.53 Aligned_cols=44 Identities=9% Similarity=-0.105 Sum_probs=33.8
Q ss_pred HHHHHHHHHhC--C--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 020091 124 ALDSFLKGAAR--G--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLG 167 (331)
Q Consensus 124 A~~~~~~A~~~--~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~ 167 (331)
+.+.|...... | .+..+...|..+...|++++|...|+..++.+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 55556555544 2 66677788888889999999999999999864
No 276
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=52.89 E-value=93 Score=25.41 Aligned_cols=81 Identities=12% Similarity=0.050 Sum_probs=48.7
Q ss_pred HHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--C--CHHHHHHHHHHHhcCCCHHHH
Q 020091 81 LRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--G--STLAMVDAGLMYWEMDKKEAA 156 (331)
Q Consensus 81 ~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~--~~~a~~~lg~~~~~~~~~~~A 156 (331)
+...++-|...+.......+-.=+..+=..|..- .. .+...|...... | .+..+...|.++...|++.+|
T Consensus 96 L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~---~~---~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A 169 (223)
T 4aez_C 96 LVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY---ID---EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKA 169 (223)
T ss_dssp HHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT---CS---CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc---cC---CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHH
Confidence 4445555554444433333333334444444441 22 444555554443 3 667777888888889999999
Q ss_pred HHHHHHHHHcC
Q 020091 157 ISLYRQAAVLG 167 (331)
Q Consensus 157 ~~~~~~a~~~~ 167 (331)
...|+..+...
T Consensus 170 ~~Vy~~Gi~~~ 180 (223)
T 4aez_C 170 DEVYQKGKRMK 180 (223)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHcC
Confidence 99999999864
No 277
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=52.87 E-value=2e+02 Score=29.15 Aligned_cols=91 Identities=13% Similarity=0.074 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020091 230 AMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHG----KAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVI 305 (331)
Q Consensus 230 a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~----~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~ 305 (331)
+...||.+| -|.+ .+++...+...+...+. .+.+.||.++...|+-+-....+..+.+..+..-...+...
T Consensus 457 AaLGLGla~-~GS~----~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalg 531 (963)
T 4ady_A 457 ASLGIGLAA-MGSA----NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVG 531 (963)
T ss_dssp HHHHHHHHS-TTCC----CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHHh-cCCC----CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 445566655 2332 23444555555443332 23455666666666665555555555554444433334444
Q ss_pred HhhhchhcHHHHHHHHHhhh
Q 020091 306 LQQLSATSRDRAMLVVDSWR 325 (331)
Q Consensus 306 ~~~l~~~~~~~a~~~~~~~~ 325 (331)
+..+.-++.+.+..+++.+.
T Consensus 532 LGll~~g~~e~~~~li~~L~ 551 (963)
T 4ady_A 532 LALINYGRQELADDLITKML 551 (963)
T ss_dssp HHHHTTTCGGGGHHHHHHHH
T ss_pred HHhhhCCChHHHHHHHHHHH
Confidence 44444444444554555443
No 278
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=52.65 E-value=63 Score=29.22 Aligned_cols=73 Identities=14% Similarity=0.025 Sum_probs=54.2
Q ss_pred HHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 020091 92 NDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-------GSTLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (331)
Q Consensus 92 ~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (331)
++...-...|.|+-+||.+-.-.- ......+..+|.+|+.. .+..-+..+|-.+.+.+++.+|+..+-.++
T Consensus 253 yd~Ghl~~YPmALgnLgDLEei~p--t~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa 330 (489)
T 4gq4_A 253 YDLGHLERYPMALGNLADLEELEP--TPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTA 330 (489)
T ss_dssp HHHTTTTTCHHHHHHHHHHHHHSC--CTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhccchhhcchhhhcccCHhhcCC--CCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhh
Confidence 444444568999999999886422 22334578899999864 466667778888889999999999999987
Q ss_pred Hc
Q 020091 165 VL 166 (331)
Q Consensus 165 ~~ 166 (331)
..
T Consensus 331 ~V 332 (489)
T 4gq4_A 331 TV 332 (489)
T ss_dssp HH
T ss_pred hh
Confidence 64
No 279
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=52.18 E-value=1.2e+02 Score=26.48 Aligned_cols=47 Identities=13% Similarity=0.196 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHHHhCCCH----HHHH---HHHHHHhcCCCHHHHHHHHHHHH
Q 020091 118 RKNLDKALDSFLKGAARGST----LAMV---DAGLMYWEMDKKEAAISLYRQAA 164 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~~~----~a~~---~lg~~~~~~~~~~~A~~~~~~a~ 164 (331)
....++-+.=++..++.|+. +|+- .+..-|.+.+++++|+.++...+
T Consensus 9 ~~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA 62 (336)
T 3lpz_A 9 SNKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVS 62 (336)
T ss_dssp -CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 34556666667777777754 4432 45555666778888877766554
No 280
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=50.68 E-value=32 Score=34.83 Aligned_cols=30 Identities=13% Similarity=0.137 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA 133 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~ 133 (331)
++...|.+|.+|.. .|++++|.++|++|+.
T Consensus 839 t~~~~yv~gr~~L~----~ge~~~A~~~F~kAA~ 868 (950)
T 4gq2_M 839 DPIAVYLKALIYLK----SKEAVKAVRCFKTTSL 868 (950)
T ss_dssp SHHHHHHHHHHHHH----TTCHHHHHHHHHTCCC
T ss_pred ChHHHHHHHHHHHH----cCCHHHHHHHHHHHhh
Confidence 67788999999999 9999999999999873
No 281
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=50.04 E-value=1.4e+02 Score=26.54 Aligned_cols=67 Identities=15% Similarity=0.096 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 020091 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (331)
...|.++-+||.+-.--- ......++..|.+|+.. .+..-+..+|-.+++.+++.+|+..+-.|++.
T Consensus 252 ~rYPmALgnLgDLEe~~p--t~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 252 KTYPMAIANLGDLEEISP--TPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp TTCHHHHHHHHHHHHHSC--CTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhCchhhcchhhHHhcCC--CCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 357899999998876411 22333488999998864 36666777888999999999999999988764
No 282
>3o10_A Sacsin; all-helical domain, homodimerization, chaperone; 1.90A {Homo sapiens}
Probab=49.87 E-value=36 Score=25.54 Aligned_cols=12 Identities=33% Similarity=0.913 Sum_probs=7.4
Q ss_pred cHHHHHHHHHHH
Q 020091 247 SHRQARKWMKRA 258 (331)
Q Consensus 247 ~~~~A~~~~~~a 258 (331)
|.+++..|+++|
T Consensus 5 ~~ee~~~wl~~A 16 (141)
T 3o10_A 5 NPVEARRWLRQA 16 (141)
T ss_dssp CHHHHHHHHHHH
T ss_pred ChHHHHHHHHHH
Confidence 566666666665
No 283
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=48.79 E-value=1.5e+02 Score=26.53 Aligned_cols=118 Identities=10% Similarity=0.036 Sum_probs=74.8
Q ss_pred HHHhHHHHHHHHHHhCCCCCHH----HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----C----CHHHHHHHHHHHh
Q 020091 81 LRAASLVCKSWNDALRPLREAM----VLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G----STLAMVDAGLMYW 148 (331)
Q Consensus 81 ~~~a~~~~~~~~~~~~~~~~~~----a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~----~~~a~~~lg~~~~ 148 (331)
.+.-..+|...++-+....--. .-..||.+|+. .+++.+|...+.+..+. + ..+.+..-..+|.
T Consensus 75 ~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~----~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~ 150 (394)
T 3txn_A 75 TGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFD----TALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYH 150 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH
Confidence 3444455555554433222222 23478999999 89999999888877642 2 2344555666777
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHH----HHHHHHHHh-cCCCCCCCHHHHHHHHHHHH
Q 020091 149 EMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRA----QYQLALCLH-RGRGVDFNLQEAARWYLRAA 223 (331)
Q Consensus 149 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a----~~~lg~~y~-~G~g~~~d~~~A~~~~~~A~ 223 (331)
..+|+.++..+|.+|....+. + ..+|.. ...-|.++. . .+||.+|..+|-.+.
T Consensus 151 ~~~n~~k~k~~l~~a~~~~~a-----------------i-~~~p~i~a~i~~~~Gi~~l~~----~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 151 ALSNLPKARAALTSARTTANA-----------------I-YCPPKVQGALDLQSGILHAAD----ERDFKTAFSYFYEAF 208 (394)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH-----------------S-CCCHHHHHHHHHHHHHHHHHT----TSCHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhhhcc-----------------C-CCCHHHHHHHHHHhhHHHHHh----ccCHHHHHHHHHHHH
Confidence 788888888888887544210 0 023332 234566666 5 789999999999986
Q ss_pred H
Q 020091 224 E 224 (331)
Q Consensus 224 ~ 224 (331)
+
T Consensus 209 ~ 209 (394)
T 3txn_A 209 E 209 (394)
T ss_dssp H
T ss_pred h
Confidence 4
No 284
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=48.06 E-value=94 Score=24.03 Aligned_cols=44 Identities=9% Similarity=0.028 Sum_probs=32.8
Q ss_pred HHHHHHHHHhC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 020091 124 ALDSFLKGAAR----GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLG 167 (331)
Q Consensus 124 A~~~~~~A~~~----~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~ 167 (331)
+.+.|...... +.+..+...|.++...|++.+|...|+.++..+
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34445544433 266777788888888999999999999999875
No 285
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.95 E-value=1.1e+02 Score=27.79 Aligned_cols=95 Identities=13% Similarity=-0.029 Sum_probs=58.8
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh-C-C------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCcc
Q 020091 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAA-R-G------STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPA 174 (331)
Q Consensus 103 a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~-~-~------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 174 (331)
....|+.+|.. .|++.+|...+..... . + -.+.+.....+|...+|+.+|..++.++...
T Consensus 139 l~~~La~i~e~----~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~-------- 206 (445)
T 4b4t_P 139 VTKDLVEIKKE----EGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKK-------- 206 (445)
T ss_dssp HHHHHHHHHHH----HTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------
Confidence 34667888887 7888888877776531 1 1 1344455555666667777777766665321
Q ss_pred CHHHHHHHHHHHHH-CCCHH----HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 175 NAEEAVKLLYQASI-AGHVR----AQYQLALCLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 175 ~~~~A~~~~~~a~~-~~~~~----a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
+.. ..++. -+..+|.++.. .++|.+|..+|..+.+
T Consensus 207 -----------~~~~~~~~~lk~~~~~~~~~~~~~----e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 207 -----------TFKNPKYESLKLEYYNLLVKISLH----KREYLEVAQYLQEIYQ 246 (445)
T ss_dssp -----------HHHSSCCHHHHHHHHHHHHHHHHH----HCCHHHHHHHHHHHHH
T ss_pred -----------hcccCCcHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHh
Confidence 001 12332 23356677765 7899999999998865
No 286
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.13 E-value=22 Score=25.79 Aligned_cols=14 Identities=36% Similarity=0.536 Sum_probs=8.8
Q ss_pred CCHHHHHHHHHHHH
Q 020091 151 DKKEAAISLYRQAA 164 (331)
Q Consensus 151 ~~~~~A~~~~~~a~ 164 (331)
|+.++|+.+|++.+
T Consensus 36 g~k~~Al~lYk~GI 49 (116)
T 2dl1_A 36 GQKEEAKNYYKQGI 49 (116)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 66666666666554
No 287
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=41.67 E-value=2.2e+02 Score=26.37 Aligned_cols=12 Identities=25% Similarity=0.116 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 020091 212 LQEAARWYLRAA 223 (331)
Q Consensus 212 ~~~A~~~~~~A~ 223 (331)
|++|+.+++++-
T Consensus 455 Y~~Ai~~L~k~~ 466 (526)
T 2wb7_A 455 YKAAINDLQKAA 466 (526)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHhhh
Confidence 344444444443
No 288
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=41.60 E-value=66 Score=27.20 Aligned_cols=57 Identities=11% Similarity=0.003 Sum_probs=42.3
Q ss_pred HhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC
Q 020091 73 AASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG 135 (331)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~ 135 (331)
...+..|++.+++..+....+..|. |+..-..|-.++.- .|++++|..-++.++.+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~--da~~R~~LfqLLcv----~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK--DASLRSSFIELLCI----DGDFERADEQLMQSIKLF 61 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT--CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc--CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhC
Confidence 3567788888888888877777654 67666666666655 688888888888887765
No 289
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.26 E-value=45 Score=24.16 Aligned_cols=16 Identities=19% Similarity=0.171 Sum_probs=9.6
Q ss_pred cCCHHHHHHHHHHHHH
Q 020091 277 EGEMMKAVVYLELATR 292 (331)
Q Consensus 277 ~~~~~~A~~~~~~A~~ 292 (331)
.|+.++|+.+|++.+.
T Consensus 35 ~g~k~~Al~lYk~GI~ 50 (116)
T 2dl1_A 35 LGQKEEAKNYYKQGIG 50 (116)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4666666666665553
No 290
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=40.22 E-value=33 Score=27.62 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=18.7
Q ss_pred HHHHHHHHHhcCCCccccHHHHHHHHHHHHHc
Q 020091 230 AMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 261 (331)
Q Consensus 230 a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 261 (331)
-.|.+|.++.. ..++.+|.++|..|...
T Consensus 16 Y~YYlGr~~~~----~~~y~~A~~~L~~A~~~ 43 (203)
T 3t5x_A 16 YKYYVGRKAMF----DSDFKQAEEYLSFAFEH 43 (203)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HhCHHHHHHHHHHHHHH
Confidence 35667777655 44777777777777665
No 291
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=34.98 E-value=64 Score=22.34 Aligned_cols=26 Identities=27% Similarity=0.123 Sum_probs=19.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHH
Q 020091 140 MVDAGLMYWEMDKKEAAISLYRQAAV 165 (331)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (331)
+-..+..+...|++++||.+.++|+.
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33456666677899999998887764
No 292
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=34.45 E-value=3.1e+02 Score=26.09 Aligned_cols=49 Identities=12% Similarity=-0.039 Sum_probs=33.4
Q ss_pred cCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC
Q 020091 174 ANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG 226 (331)
Q Consensus 174 ~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~ 226 (331)
+|...|..++.+... ...+.+.|.+|..+.. .++.++|..+|++++...
T Consensus 299 ~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~----~g~~~~a~~~~~~~a~~~ 349 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLE----RGREAEAKEILHQLMQQR 349 (618)
T ss_dssp TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHccccccccHhHHHHHHHHHHH----cCCHHHHHHHHHHHhcCC
Confidence 344444444443222 1367888999998876 688999999999998754
No 293
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=34.25 E-value=1e+02 Score=27.42 Aligned_cols=29 Identities=10% Similarity=-0.136 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 020091 264 GKAQLEHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 264 ~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
.--+..+|-+++..+++.+|+..+..|++
T Consensus 296 vYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 296 IYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 34445566666667777777777766654
No 294
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=33.34 E-value=8.9 Score=32.25 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=0.0
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 020091 245 PLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 245 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
......|.....+|++ +...|++++|+.+|+.|++
T Consensus 17 dp~~~~Ai~lv~~AVe-------------~D~~g~y~eAl~lY~eaIe 51 (257)
T 2ymb_A 17 DPQSTAAATVLKRAVE-------------LDSESRYPQALVCYQEGID 51 (257)
T ss_dssp ------------------------------------------------
T ss_pred ChhHHHHHHHHHHHHH-------------HHHcCCHHHHHHHHHHHHH
Confidence 3444555555555544 3345555555555555554
No 295
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=33.11 E-value=15 Score=25.35 Aligned_cols=13 Identities=23% Similarity=0.317 Sum_probs=5.7
Q ss_pred cCHHHHHHHHHHH
Q 020091 174 ANAEEAVKLLYQA 186 (331)
Q Consensus 174 ~~~~~A~~~~~~a 186 (331)
++.++|+.||++.
T Consensus 33 G~k~~A~~~YkkG 45 (89)
T 3eab_A 33 GQKEQAVEWYKKG 45 (89)
T ss_dssp SSGGGSHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 3344444444443
No 296
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=31.12 E-value=1.3e+02 Score=20.79 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=19.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHH
Q 020091 269 EHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 269 ~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
..+..+...|+|++|+.+.++|+.
T Consensus 20 RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 20 RRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHhcCCHHHHHHHHHHHHH
Confidence 456667779999999998888874
No 297
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.99 E-value=1.2e+02 Score=28.19 Aligned_cols=79 Identities=15% Similarity=-0.036 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----CC---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-C
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GS---TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-Q 172 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~~---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-~ 172 (331)
+..+..|=..|.. .+.+++|..+..++.-- .+ ..-+|.+|.++.-.+++.+|.+++..|....+... .
T Consensus 231 a~l~nllLRnYL~----~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a 306 (523)
T 4b4t_S 231 AMLINLILRDFLN----NGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKS 306 (523)
T ss_dssp HHHHHHHHHHHHH----SSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSC
T ss_pred HHHHHHHHHHHHc----cCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhh
Confidence 3445556677777 78999999999998532 11 33457889999999999999999999998766544 3
Q ss_pred ccCHHHHHHHH
Q 020091 173 PANAEEAVKLL 183 (331)
Q Consensus 173 ~~~~~~A~~~~ 183 (331)
.+....+.+++
T Consensus 307 ~gfr~~a~K~l 317 (523)
T 4b4t_S 307 LGFLQQSNKLH 317 (523)
T ss_dssp SHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 34444555443
No 298
>3o10_A Sacsin; all-helical domain, homodimerization, chaperone; 1.90A {Homo sapiens}
Probab=29.42 E-value=1.1e+02 Score=22.80 Aligned_cols=44 Identities=14% Similarity=-0.090 Sum_probs=25.6
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 020091 116 GVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (331)
Q Consensus 116 g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (331)
|..+|.+++..|+++|.. .+..+......|+++.|.=..++|++
T Consensus 1 ~~~~~~ee~~~wl~~A~~------dl~~A~~~~~~g~y~~a~F~aqQA~E 44 (141)
T 3o10_A 1 GSVGNPVEARRWLRQARA------NFSAARNDLHKNANEWVCFKCYLSTK 44 (141)
T ss_dssp CCCCCHHHHHHHHHHHHH------HHHHHGGGTTTTCHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHh------hhhHHhhHHhhCccceEeeehhHHHH
Confidence 346788888888888753 22233333445566555555555543
No 299
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=28.96 E-value=36 Score=22.78 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=18.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc
Q 020091 141 VDAGLMYWEMDKKEAAISLYRQAAVL 166 (331)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (331)
..+|.-|...|+++.|+.+|+.++..
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 45666676778888888888777643
No 300
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=28.13 E-value=65 Score=25.81 Aligned_cols=30 Identities=7% Similarity=0.023 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR 134 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~ 134 (331)
+.-.|.+|.++.. ..|+.+|.++|..|...
T Consensus 14 v~Y~YYlGr~~~~----~~~y~~A~~~L~~A~~~ 43 (203)
T 3t5x_A 14 VTYKYYVGRKAMF----DSDFKQAEEYLSFAFEH 43 (203)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HhCHHHHHHHHHHHHHH
Confidence 4567888888888 88899999998888875
No 301
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=27.44 E-value=1.5e+02 Score=26.91 Aligned_cols=64 Identities=8% Similarity=-0.080 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc-------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 020091 227 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-------GHGKAQLEHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 227 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
++-|+-+||.+-.-.. ....+.+...|.+|+.. .+.--+..+|-+++..+++.+|+..+..|++
T Consensus 261 YPmALgnLgDLEei~p--t~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 261 YPMALGNLADLEELEP--TPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 331 (489)
T ss_dssp CHHHHHHHHHHHHHSC--CTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhhhcccCHhhcCC--CCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhh
Confidence 4555555555543211 11222334455554432 2334445556666666777777777766654
No 302
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=26.92 E-value=1.5e+02 Score=26.90 Aligned_cols=32 Identities=13% Similarity=-0.103 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 191 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 191 ~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
+|.|+.|||.+=..-. ...-..++.+|.+|+.
T Consensus 276 YPmALgnLgDLEe~~p--t~gr~~~~~L~~~AI~ 307 (550)
T 3u84_A 276 YPMALGNLADLEELEP--TPGRPDPLTLYHKGIA 307 (550)
T ss_dssp CHHHHHHHHHHHHHSC--CTTCCCHHHHHHHHHH
T ss_pred CchhhcchhhHhhcCC--CCCCCCHHHHHHHHHH
Confidence 4666666665544311 1111235555555543
No 303
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=26.39 E-value=91 Score=20.49 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=23.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 268 LEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 268 ~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
..+|..+...|++++|..+|-+|+..
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~V 46 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAV 46 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 56788888899999999999999885
No 304
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=25.66 E-value=3e+02 Score=23.15 Aligned_cols=48 Identities=15% Similarity=0.036 Sum_probs=22.5
Q ss_pred cHHHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 020091 247 SHRQARKWMKRAADCG--HGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 294 (331)
Q Consensus 247 ~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~ 294 (331)
+.++|+......++.. +.+....|-.+++-.|++++|...++.+++.+
T Consensus 12 ~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 12 QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 61 (273)
T ss_dssp CHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 4445555555444442 23333344444444555555555555444443
No 305
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=25.55 E-value=5.6e+02 Score=26.27 Aligned_cols=86 Identities=14% Similarity=0.094 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CCCCCccCHHHHHHHHHHH-HHCCCHHHHHHHHHHHhcCCCCCCCH
Q 020091 135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLG-DPAAQPANAEEAVKLLYQA-SIAGHVRAQYQLALCLHRGRGVDFNL 212 (331)
Q Consensus 135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~A~~~~~~a-~~~~~~~a~~~lg~~y~~G~g~~~d~ 212 (331)
.++...|.+|.++...|++++|..+|++|+..- ...........-....... ...+.+.=++.+..++.. .+-+
T Consensus 840 ~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~----~~~~ 915 (1139)
T 4fhn_B 840 SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFE----ESAY 915 (1139)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHH----TSCC
T ss_pred CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHH----cCCH
Confidence 466677999999999999999999999986432 1111122222111110000 001233334455556654 4567
Q ss_pred HHHHHHHHHHHH
Q 020091 213 QEAARWYLRAAE 224 (331)
Q Consensus 213 ~~A~~~~~~A~~ 224 (331)
+.++++-+.|++
T Consensus 916 ~~vi~fa~lAi~ 927 (1139)
T 4fhn_B 916 IDALEFSLLADA 927 (1139)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777777765
No 306
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=25.36 E-value=1.8e+02 Score=22.42 Aligned_cols=33 Identities=24% Similarity=0.470 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG 135 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~ 135 (331)
..+..+-..+.++.. .+++.+|.+.|++++..+
T Consensus 94 ~~AlfY~~wA~~lE~----~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 94 SLAQFYISWAEEYEA----RENFRKADAIFQEGIQQK 126 (164)
T ss_dssp TBHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcC
Confidence 344555555666666 689999999999998876
No 307
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=25.30 E-value=3.3e+02 Score=27.40 Aligned_cols=100 Identities=11% Similarity=0.099 Sum_probs=53.7
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccC-HHHHHHHHHHHHHCCCHH--H
Q 020091 118 RKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPAN-AEEAVKLLYQASIAGHVR--A 194 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~A~~~~~~a~~~~~~~--a 194 (331)
.+.++-|.++. .=+. .++-..|.+|.+|...|++++|..+|++|+..-........ ......+. -..+..... =
T Consensus 823 ~~~~~~a~eL~-~~~~-~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll-~~~e~~~~~~~Y 899 (950)
T 4gq2_M 823 FKQYNACMQLI-GWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA-EKYHHQNLLSCY 899 (950)
T ss_dssp TTCHHHHHHHG-GGCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHH-HHTTTCSHHHHH
T ss_pred hcHHHHHHHHH-hhcC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhcc-CcccccchhHHH
Confidence 35555544422 1112 36667799999999999999999999998742111111111 11111111 111222222 2
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 195 QYQLALCLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 195 ~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
+..+..+++. .+-++-++++-+.|++
T Consensus 900 Y~hV~~LFE~----~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 900 YLHLSKKLFE----ESAYIDALEFSLLADA 925 (950)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHh
Confidence 2345555554 5567777777777765
No 308
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=24.57 E-value=1.3e+02 Score=18.49 Aligned_cols=38 Identities=16% Similarity=0.087 Sum_probs=24.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 020091 126 DSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQA 163 (331)
Q Consensus 126 ~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 163 (331)
+.++..++.|.......++.-.......+.|++|+.|.
T Consensus 11 qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 11 QMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHHHh
Confidence 34566667776666666665555555677777777663
No 309
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=24.26 E-value=78 Score=22.46 Aligned_cols=37 Identities=24% Similarity=0.032 Sum_probs=25.8
Q ss_pred HHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 020091 128 FLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (331)
Q Consensus 128 ~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (331)
|.-.+..|++...+.-+.-..+.||+++|...+++|-
T Consensus 11 m~iI~~aG~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~ 47 (105)
T 2e2a_A 11 FEIVAYAGDARSKLLEALKAAENGDFAKADSLVVEAG 47 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5555666777777777777777777777777776654
No 310
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=24.20 E-value=85 Score=22.17 Aligned_cols=37 Identities=16% Similarity=0.027 Sum_probs=25.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 020091 128 FLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (331)
Q Consensus 128 ~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (331)
|.-.+..|++...+.-+.-..+.||+++|...+++|-
T Consensus 9 m~iI~~aG~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~ 45 (103)
T 1wcr_A 9 MGLIINSGQARSLAYAALKQAKQGDFAAAKAMMDQSR 45 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4445556677777777777777777777777776654
No 311
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=23.86 E-value=2.1e+02 Score=21.94 Aligned_cols=76 Identities=11% Similarity=0.002 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCHHHHHHHH
Q 020091 209 DFNLQEAARWYLRA-AEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYL 287 (331)
Q Consensus 209 ~~d~~~A~~~~~~A-~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~ 287 (331)
..||.+-+.-++.. .+.=.....|.|+..|..+..+. ++...-....+... .+-.+-+-|||...|++++|+..-
T Consensus 21 ~~dYs~VI~~L~~~~~~~Lp~~~kY~LA~SYI~~e~Ls---~eQKenIln~itlk-Sde~yL~YWIyiGRg~~~eAlDiA 96 (161)
T 2ynq_A 21 QNKYSDVITTLEDYAPEDMPYVIQYELASSYVMTESLT---EEQRQTVSNNITLK-TDEQYMLYWIYIGRSQSEEALELA 96 (161)
T ss_dssp TTCHHHHHHHHTTSCGGGSCHHHHHHHHHHHHHTSSSC---HHHHHHHHHTCCTT-SCHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HhhHHHHHHHHhcCChhhCChhHHHHHHHHHHHccCCC---HHHHHHHHhhCCcc-CCHHHHHHHHHHcCCchHHHHHHH
Confidence 46677777666554 23345667788888887765432 22222222222221 223344557777788888887654
Q ss_pred H
Q 020091 288 E 288 (331)
Q Consensus 288 ~ 288 (331)
+
T Consensus 97 ~ 97 (161)
T 2ynq_A 97 R 97 (161)
T ss_dssp H
T ss_pred H
Confidence 3
No 312
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=22.56 E-value=78 Score=18.65 Aligned_cols=38 Identities=34% Similarity=0.541 Sum_probs=31.3
Q ss_pred ccCCChHHHHHHHHhccCCchHHHhHHHHHHHHHHhCC
Q 020091 60 DFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRP 97 (331)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 97 (331)
.+..+|.+++..+...+...++..+..+|+.|.....+
T Consensus 8 ~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~ 45 (53)
T 1fs1_A 8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASD 45 (53)
T ss_dssp -CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTC
T ss_pred CHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Confidence 46678999999999999888888888899999887653
No 313
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=22.55 E-value=3e+02 Score=22.00 Aligned_cols=65 Identities=11% Similarity=-0.039 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHhC--C--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHH
Q 020091 119 KNLDKALDSFLKGAAR--G--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQ 185 (331)
Q Consensus 119 ~~~~~A~~~~~~A~~~--~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~ 185 (331)
.+...+.+.|...... | .+..+...|..+...|++++|...|+..+...-. -.....++..-|++
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~--P~~rL~~~~~~F~~ 161 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR--PYNRLLRSLSNYED 161 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB--SHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc--cHHHHHHHHHHHHH
Confidence 3456666666655443 3 6666778888888899999999999999987431 12334444444443
No 314
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=22.46 E-value=4.4e+02 Score=23.92 Aligned_cols=67 Identities=13% Similarity=0.047 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 020091 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (331)
...|.|+-+||.+-.--- ......++.+|.+|+.. .+..-+..+|-+|++.+++.+|+..+-.|++.
T Consensus 274 ~rYPmALgnLgDLEe~~p--t~gr~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~V 347 (550)
T 3u84_A 274 ERYPMALGNLADLEELEP--TPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATV 347 (550)
T ss_dssp TTCHHHHHHHHHHHHHSC--CTTCCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhCchhhcchhhHhhcCC--CCCCCCHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHH
Confidence 347889999998876411 12222488888888854 36666777888999999999999999998764
No 315
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=21.63 E-value=1e+02 Score=22.04 Aligned_cols=37 Identities=16% Similarity=0.082 Sum_probs=24.8
Q ss_pred HHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 020091 128 FLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (331)
Q Consensus 128 ~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (331)
|+-.+..|++...+.-+.-..+.||+++|...+++|-
T Consensus 13 m~iI~~aG~Ars~~~eAl~~Ak~gdfe~A~~~l~eA~ 49 (109)
T 3k1s_A 13 FQLILNSGNARSFAMEALQFAKQGKMAEADEAMVKAK 49 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444555667777777777777777777777776654
No 316
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.48 E-value=1.6e+02 Score=18.56 Aligned_cols=36 Identities=14% Similarity=-0.003 Sum_probs=25.7
Q ss_pred HHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 020091 128 FLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQA 163 (331)
Q Consensus 128 ~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 163 (331)
..+.+++|.+......+.....+.+.+.|+.|+..-
T Consensus 13 v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h 48 (64)
T 2crn_A 13 LEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDH 48 (64)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 356667787777777777666666888888887654
No 317
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=20.69 E-value=3.3e+02 Score=21.76 Aligned_cols=38 Identities=13% Similarity=-0.057 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHcCCCCC-------------CccCHHHHHHHHHHHHHCC
Q 020091 153 KEAAISLYRQAAVLGDPAA-------------QPANAEEAVKLLYQASIAG 190 (331)
Q Consensus 153 ~~~A~~~~~~a~~~~~~~~-------------~~~~~~~A~~~~~~a~~~~ 190 (331)
..++...|.-....+.... ..+++.+|...|+.+++.+
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 5555555555554433333 5677888888887777653
No 318
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=20.47 E-value=2.4e+02 Score=21.39 Aligned_cols=65 Identities=9% Similarity=0.161 Sum_probs=38.3
Q ss_pred HHHHHHHhcc-CCchHHHhHHHHHHHHHHhCCCCCH-----------------HHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 020091 67 DVLNKIAASF-TLPQLRAASLVCKSWNDALRPLREA-----------------MVLLRWGKRFKHGRGVRKNLDKALDSF 128 (331)
Q Consensus 67 ~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----------------~a~~~LG~~y~~g~g~~~~~~~A~~~~ 128 (331)
.++.++...+ ....+.......+-|++-+.-..+| ..+-..+.++.. .+++.+|.+.|
T Consensus 49 ~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~----~g~~~~A~~Vy 124 (152)
T 4a1g_A 49 TLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEA----QGELQHASAVL 124 (152)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTBSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHH----TTCHHHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhcCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHH
Confidence 4455555544 3455555555555555554433343 334444455555 68888888888
Q ss_pred HHHHhCC
Q 020091 129 LKGAARG 135 (331)
Q Consensus 129 ~~A~~~~ 135 (331)
+++++.+
T Consensus 125 ~~Gi~~~ 131 (152)
T 4a1g_A 125 QRGIQNQ 131 (152)
T ss_dssp HHHHHTT
T ss_pred HHHHHcC
Confidence 8888765
Done!