BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020092
(331 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FWS6|BBD1_ARATH Bifunctional nuclease 1 OS=Arabidopsis thaliana GN=BBD1 PE=2 SV=1
Length = 325
Score = 507 bits (1306), Expect = e-143, Method: Compositional matrix adjust.
Identities = 250/334 (74%), Positives = 281/334 (84%), Gaps = 12/334 (3%)
Query: 1 MGSLQGPVFCPAVRARQ-GGLYNTVPSTGPVMKARFFRSELWG--FKGLTAVKTKVGVFT 57
M S+Q PV CPA+R RQ G + V TG +K R S+ WG KG+ + T +
Sbjct: 1 MRSVQAPVVCPAIRPRQVGACASLVNYTG--LKPR---SQFWGNRTKGVKSQGTTTTITL 55
Query: 58 RQQNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRD 117
R N K ++C FSS S+GNGS AENFNENDE++VNSSVVEAVEVKSGADGFM+KMRD
Sbjct: 56 RLCN----KSIKCVFSSHSDGNGSTAENFNENDEEYVNSSVVEAVEVKSGADGFMVKMRD 111
Query: 118 GRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIAR 177
GR LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAM NVQIAR
Sbjct: 112 GRQLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIAR 171
Query: 178 PTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIA 237
PT+YQVVKEM++KMGYEVRLVRVTKRVHEAYFAQL+L+KVGN +ECVSFDLRPSDAINIA
Sbjct: 172 PTMYQVVKEMVDKMGYEVRLVRVTKRVHEAYFAQLFLSKVGNASECVSFDLRPSDAINIA 231
Query: 238 VRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVR 297
VRCK+PIQVNKYLAYSDGMRVIESGK+ST +P SDGLLFTE D+P+GQ CLDTKEFN++
Sbjct: 232 VRCKIPIQVNKYLAYSDGMRVIESGKISTPAPASDGLLFTEQDRPNGQACLDTKEFNILS 291
Query: 298 NMLIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT 331
M+ A EERY +AA+WRDKLGQ RAKRNLRK+T
Sbjct: 292 KMMQAVDEERYDEAAEWRDKLGQFRAKRNLRKYT 325
>sp|Q93VH2|BBD2_ARATH Bifunctional nuclease 2 OS=Arabidopsis thaliana GN=BBD2 PE=2 SV=1
Length = 329
Score = 495 bits (1275), Expect = e-139, Method: Compositional matrix adjust.
Identities = 236/331 (71%), Positives = 277/331 (83%), Gaps = 2/331 (0%)
Query: 1 MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
M SLQ PV CP+VR RQ G+ + + V K R R + WG + K++ +
Sbjct: 1 MRSLQAPVVCPSVRPRQLGVSALLVNCS-VSKTRSLRKQFWGNQTKND-KSQAATVNLRL 58
Query: 61 NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
+ R+ K ++C FSS S+G GS AENFNENDED+V SSV+EAVEVKSG DGFM+KM+DGR
Sbjct: 59 HLRRYKSIKCLFSSHSDGTGSTAENFNENDEDYVKSSVLEAVEVKSGPDGFMVKMKDGRQ 118
Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
LRCVHNNPQGG+LP+YAPH AIVLKMEDGTGLLLPIIVLEMPSVLLMAAM NVQIARPT+
Sbjct: 119 LRCVHNNPQGGNLPNYAPHSAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIARPTM 178
Query: 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
YQVVK+M++KMGYEVRLVRVT RVHEAYFA+LYL+KVG++++CVSFDLRPSDAINIAVRC
Sbjct: 179 YQVVKDMVDKMGYEVRLVRVTTRVHEAYFAELYLSKVGDKSDCVSFDLRPSDAINIAVRC 238
Query: 241 KVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNML 300
KVPIQVNKYLAYSDGMRVI+SGKLS +P SDGLLFTELD+P+GQPC DTKEF+LVRNM+
Sbjct: 239 KVPIQVNKYLAYSDGMRVIDSGKLSKQTPASDGLLFTELDRPNGQPCFDTKEFDLVRNMM 298
Query: 301 IAAVEERYRDAAQWRDKLGQLRAKRNLRKFT 331
A EERY +AA+WRDKLG+ +AKR LRK+T
Sbjct: 299 QAVDEERYDEAAEWRDKLGKFQAKRKLRKYT 329
>sp|Q6YZM6|BBD2_ORYSJ Bifunctional nuclease 2 OS=Oryza sativa subsp. japonica GN=BBD2
PE=2 SV=1
Length = 325
Score = 400 bits (1027), Expect = e-111, Method: Compositional matrix adjust.
Identities = 194/326 (59%), Positives = 258/326 (79%), Gaps = 9/326 (2%)
Query: 3 SLQGPVFCPAVRARQ---GGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQ 59
+++GP+ C AV + + N++ +G + A F + ++ +T + + + ++
Sbjct: 2 AMEGPILCRAVMQAKLPVTMISNSLTKSGQLGTA--FLGCVCKYRNITRLISPIYQPAQK 59
Query: 60 QNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGR 119
A C +FSSSS+GNG MA NF+E+DED+VNS+V+EAVEV+SGA+G++IKMRDG+
Sbjct: 60 NFATVCG----SFSSSSDGNGYMAGNFSESDEDYVNSTVLEAVEVRSGAEGYVIKMRDGK 115
Query: 120 HLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPT 179
+LRCVHNN QG ++P+ AP PAIVL++EDG+ LLPIIVLEMPSVLLMAA+RNV IARPT
Sbjct: 116 NLRCVHNNSQGRNIPESAPQPAIVLRIEDGSETLLPIIVLEMPSVLLMAAIRNVHIARPT 175
Query: 180 LYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVR 239
+YQVVKEMI+KMGYEV+LVR+ KR+ EAY A+L+LTKVG+ TE ++FDLRPSDAINIAVR
Sbjct: 176 IYQVVKEMIDKMGYEVKLVRINKRIQEAYCAELFLTKVGDHTESITFDLRPSDAINIAVR 235
Query: 240 CKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNM 299
CKVPIQV++ LAYSDG+R +E +++ + SDGLLFTELD+P GQPC++ +EF L+RNM
Sbjct: 236 CKVPIQVHRSLAYSDGIRSVEPARMAIAAGMSDGLLFTELDRPDGQPCVEAQEFGLIRNM 295
Query: 300 LIAAVEERYRDAAQWRDKLGQLRAKR 325
LIAAVEERY+DAA WRDKL LR+KR
Sbjct: 296 LIAAVEERYKDAATWRDKLMLLRSKR 321
>sp|Q09LL3|BBD_ORYMI Bifunctional nuclease OS=Oryza minuta GN=BBD PE=2 SV=1
Length = 331
Score = 321 bits (823), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 170/329 (51%), Positives = 239/329 (72%), Gaps = 6/329 (1%)
Query: 1 MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKG--LTAVKTKVGVFTR 58
M + GPV G L + +G +++ R G +G A + G F
Sbjct: 1 MEIINGPVLPRYAAPATGALTSDAKISGQLLRRVHLRRRACGLQGDHYRAARRFFG-FPS 59
Query: 59 QQNARKCKI--VQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMR 116
+++AR + V C++ SSS+G+G+ A +++ + E+FVNSSV+EAVE++S +DGF+IKMR
Sbjct: 60 ERHARSGWVWPVYCSYGSSSDGDGAAAADYDASGEEFVNSSVMEAVELRSVSDGFVIKMR 119
Query: 117 DGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIA 176
DG++LRCV NNP+ L D APH AIVLKMEDG+ LLLPIIV+E PS++L+AA+RN++I
Sbjct: 120 DGKNLRCVQNNPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIP 179
Query: 177 RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINI 236
RPT+Y VVKEM E+MGY VRLVR+T+ VH+AY+++LYL K+GNE E +S DL+PSDAINI
Sbjct: 180 RPTIYNVVKEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAINI 239
Query: 237 AVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLV 296
A RCKVPIQVN+ +AY++G++V++ ++ SD +T LD+P QPC + +EF+LV
Sbjct: 240 AFRCKVPIQVNRRIAYNNGLKVVQPTPSESYV-SSDQFQYTRLDRPDDQPCFEAQEFDLV 298
Query: 297 RNMLIAAVEERYRDAAQWRDKLGQLRAKR 325
RNML+AAVEERY+DAAQ+RD+L RAK+
Sbjct: 299 RNMLVAAVEERYKDAAQYRDQLFMFRAKK 327
>sp|Q5N8J3|BBD1_ORYSJ Bifunctional nuclease 1 OS=Oryza sativa subsp. japonica GN=BBD1
PE=2 SV=1
Length = 331
Score = 320 bits (821), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 170/329 (51%), Positives = 239/329 (72%), Gaps = 6/329 (1%)
Query: 1 MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKG--LTAVKTKVGVFTR 58
M + GPV G L + +G +++ R G +G A + G F
Sbjct: 1 MEIINGPVLPRYAAPATGALTSDAKISGQLLRRVHLRRRACGLQGDHYRAARRFFG-FPS 59
Query: 59 QQNARKCKI--VQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMR 116
+++AR + V C++ SSS+G+G+ A +++ + E+FVNSSV+EAVE++S +DGF+IKMR
Sbjct: 60 ERHARSGWVWPVCCSYGSSSDGDGAAAADYDASGEEFVNSSVMEAVELRSVSDGFVIKMR 119
Query: 117 DGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIA 176
DG++LRCV NNP+ L D APH AIVLKMEDG+ LLLPIIV+E PS++L+AA+RN++I
Sbjct: 120 DGKNLRCVQNNPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIP 179
Query: 177 RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINI 236
RPT+Y VVKEM E+MGY VRLVR+T+ VH+AY+++LYL K+GNE E +S DL+PSDAINI
Sbjct: 180 RPTIYNVVKEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAINI 239
Query: 237 AVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLV 296
A RCKVPIQVN+ +AY++G++V++ ++ SD +T LD+P QPC + +EF+LV
Sbjct: 240 AFRCKVPIQVNRRIAYNNGLKVVQPTPSESYV-SSDQFQYTRLDRPDDQPCFEAQEFDLV 298
Query: 297 RNMLIAAVEERYRDAAQWRDKLGQLRAKR 325
RNML+AAVEERY+DAAQ+RD+L RAK+
Sbjct: 299 RNMLVAAVEERYKDAAQYRDQLFMFRAKK 327
>sp|B8A8D2|BBD1_ORYSI Bifunctional nuclease 1 OS=Oryza sativa subsp. indica GN=BBD1 PE=3
SV=1
Length = 331
Score = 318 bits (814), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 170/329 (51%), Positives = 238/329 (72%), Gaps = 6/329 (1%)
Query: 1 MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKG--LTAVKTKVGVFTR 58
M + GPV G L + +G +++ R G +G A + G F
Sbjct: 1 MEIINGPVLPRYAAPATGALTSDAKISGQLLRRVHLRRRACGLQGDHYRAARRFFG-FPS 59
Query: 59 QQNARKCKI--VQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMR 116
+++AR + V C++ SSS+G+G+ A +++ + E+FVNSSV+EAVE++S +DGF+IKMR
Sbjct: 60 ERHARSGWVWPVCCSYGSSSDGDGAAAADYDASGEEFVNSSVMEAVELRSVSDGFVIKMR 119
Query: 117 DGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIA 176
DG++LRCV NNP+ L D APH AIVLKMEDG+ LLLPIIV+E PS++L+AA+RN++I
Sbjct: 120 DGKNLRCVQNNPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIP 179
Query: 177 RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINI 236
RPT+Y VVKEM E+MGY VRLVR+T+ VH+AY+++LYL K+GNE E +S DL+PSDAINI
Sbjct: 180 RPTIYNVVKEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAINI 239
Query: 237 AVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLV 296
A RCKVPIQVN+ +AY++G++V++ ++ SD T LD+P QPC + +EF+LV
Sbjct: 240 AFRCKVPIQVNRRIAYNNGLKVVQPTPSESYV-SSDQFQCTRLDRPDDQPCFEAQEFDLV 298
Query: 297 RNMLIAAVEERYRDAAQWRDKLGQLRAKR 325
RNML+AAVEERY+DAAQ+RD+L RAK+
Sbjct: 299 RNMLVAAVEERYKDAAQYRDQLFMFRAKK 327
>sp|Q50604|Y1829_MYCTU Uncharacterized protein Rv1829/MT1877 OS=Mycobacterium tuberculosis
GN=Rv1829 PE=4 SV=2
Length = 164
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 139 HPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLV 198
P ++L+ +G L PI + + + + + V+ RP + +++++I +G+ ++ V
Sbjct: 17 QPVLLLREANGDRYL-PIWIGQSEAAAIALEQQGVEPPRPLTHDLIRDLIAALGHSLKEV 75
Query: 199 RVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRV 258
R+ ++A L + + RPSD++ IA+R VPI V + + G+ +
Sbjct: 76 RIVDLQEGTFYADLIFDR------NIKVSARPSDSVAIALRVGVPIYVEEAVLAQAGLLI 129
>sp|Q1RK25|EX7L_RICBR Exodeoxyribonuclease 7 large subunit OS=Rickettsia bellii (strain
RML369-C) GN=xseA PE=3 SV=1
Length = 442
Score = 35.0 bits (79), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 226 FDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSG 284
F+L+ + AI +A C PI +DGM V+ SGKLS+++ S L E +P+G
Sbjct: 53 FNLKENTAI-LACTCWRPILAKIKFPLNDGMEVVISGKLSSYAGNSRYQLSVENLQPAG 110
>sp|A8GXS3|EX7L_RICB8 Exodeoxyribonuclease 7 large subunit OS=Rickettsia bellii (strain
OSU 85-389) GN=xseA PE=3 SV=1
Length = 442
Score = 35.0 bits (79), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 226 FDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSG 284
F+L+ + AI +A C PI +DGM V+ SGKLS+++ S L E +P+G
Sbjct: 53 FNLKENTAI-LACTCWRPILAKIKFPLNDGMEVVISGKLSSYAGNSRYQLSVENLQPAG 110
>sp|Q68W63|EX7L_RICTY Exodeoxyribonuclease 7 large subunit OS=Rickettsia typhi (strain
ATCC VR-144 / Wilmington) GN=xseA PE=3 SV=1
Length = 453
Score = 35.0 bits (79), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 226 FDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSG 284
F+L+ + AI +A C PI V +DGM V+ GKLS++S S L + +P+G
Sbjct: 53 FNLKENTAI-LACTCWRPILVKIKFPLNDGMEVVIGGKLSSYSGNSRYQLSVDNLQPAG 110
>sp|Q92GU6|EX7L_RICCN Exodeoxyribonuclease 7 large subunit OS=Rickettsia conorii (strain
ATCC VR-613 / Malish 7) GN=xseA PE=3 SV=2
Length = 444
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 226 FDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSG 284
F+L+ + AI +A C PI +DGM V+ SGKLS+++ S L + +P+G
Sbjct: 53 FNLKENTAI-LACTCWRPILAKITFPLNDGMEVVISGKLSSYAGNSRYQLSVDNLQPTG 110
>sp|C3PPC7|EX7L_RICAE Exodeoxyribonuclease 7 large subunit OS=Rickettsia africae (strain
ESF-5) GN=xseA PE=3 SV=1
Length = 444
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 226 FDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSG 284
F+L+ + AI +A C PI +DGM V+ SGKLS+++ S L + +P+G
Sbjct: 53 FNLKENTAI-LACTCWRPILAKIKFPLNDGMEVVISGKLSSYAGNSRYQLSVDNLQPTG 110
>sp|Q4UMV4|EX7L_RICFE Exodeoxyribonuclease 7 large subunit OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=xseA PE=3 SV=2
Length = 450
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 226 FDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSG 284
F+L+ + AI +A C PI +DGM V+ SGKLS+++ S L + +P+G
Sbjct: 53 FNLKENTAI-LACTCWRPILAKIKFPLNDGMEVVISGKLSSYAGNSRYQLSVDNLQPAG 110
>sp|P75010|TERW_SERMA Tellurium resistance protein TerW OS=Serratia marcescens GN=terW
PE=4 SV=1
Length = 155
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 17/113 (15%)
Query: 172 NVQIARPTLYQVVKEMIE---------KMGYEVRLV-------RVTKRVHEAYFAQLYLT 215
+++ + PTL + +KE+ E K G+ LV + +R++EA AQ
Sbjct: 31 SLECSEPTLTRALKELRESYSAEIKYSKAGHSYHLVNPGQLDKKTLRRMNEA-LAQNAEL 89
Query: 216 KVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHS 268
K G T V D A+++++R ++ ++++ A S R KL+ HS
Sbjct: 90 KTGESTGKVVLDKDKKTAVSLSLRMRILRKIDRLAALSGSTRSEAVEKLALHS 142
>sp|Q9KHS2|SSUD_PSESP Alkanesulfonate monooxygenase OS=Pseudomonas sp. GN=ssuD PE=3 SV=1
Length = 382
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 247 NKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNMLIAAVE 305
KYL SDG R ++ G L + +D L F + P+G+ C D+ LV LI E
Sbjct: 15 GKYLGTSDGARAVDHGYLQQIAQAADRLGFGGVLIPTGRSCEDSW---LVAASLIPVTE 70
>sp|Q9ZCP8|EX7L_RICPR Exodeoxyribonuclease 7 large subunit OS=Rickettsia prowazekii
(strain Madrid E) GN=xseA PE=3 SV=1
Length = 453
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 226 FDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSG 284
F+L+ + AI +A C PI +DGM V+ GKLS++S S L + +P+G
Sbjct: 53 FNLKENTAI-LACTCWRPILAKIKFPLNDGMEVVIGGKLSSYSGNSRYQLSVDNLQPAG 110
>sp|Q9KHR3|SSUD_BUTSP Alkanesulfonate monooxygenase OS=Buttiauxella sp. (strain PNBS)
GN=ssuD PE=3 SV=1
Length = 382
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 247 NKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDT 290
KYL SDG R ++ G L + +D L F + P+G+ C D+
Sbjct: 15 GKYLGTSDGARAVDHGYLQQIAQAADRLGFGGVLIPTGRSCEDS 58
>sp|B0KH56|SSUD_PSEPG Alkanesulfonate monooxygenase OS=Pseudomonas putida (strain GB-1)
GN=ssuD PE=3 SV=1
Length = 382
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 247 NKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDT 290
KYL SDG R ++ G L + +D L F + P+G+ C D+
Sbjct: 15 GKYLGTSDGARAVDHGYLQQIAQAADRLGFGGVLIPTGRSCEDS 58
>sp|Q4QNE5|EX7L_HAEI8 Exodeoxyribonuclease 7 large subunit OS=Haemophilus influenzae
(strain 86-028NP) GN=xseA PE=3 SV=1
Length = 439
Score = 32.7 bits (73), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 7/112 (6%)
Query: 196 RLVRVTKRVHEAYFAQLYLT-KVGNETECVS--FDLRPSDAINIAVRCKVPIQVNKYLAY 252
+L +++ E F+Q++LT ++ N T+ VS + L D N VRC + N +A+
Sbjct: 10 QLNSAARQMLEGNFSQIWLTGEISNFTQPVSGHWYLTLKDE-NAQVRCAMFRMKNLRVAF 68
Query: 253 --SDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNMLIA 302
+GM+V+ +S + P D L + P+G+ L ++F ++ L A
Sbjct: 69 RPQNGMQVLVRANVSLYEPRGDYQLIIDSMHPAGEGLLQ-QQFEALKMKLAA 119
>sp|P43913|EX7L_HAEIN Exodeoxyribonuclease 7 large subunit OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=xseA PE=3
SV=1
Length = 439
Score = 32.0 bits (71), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 7/112 (6%)
Query: 196 RLVRVTKRVHEAYFAQLYLT-KVGNETECVS--FDLRPSDAINIAVRCKVPIQVNKYLAY 252
+L +++ E F Q++LT ++ N T+ VS + L D N VRC + N +A+
Sbjct: 10 QLNSAARQMLEGNFCQIWLTGEISNFTQPVSGHWYLTLKDE-NAQVRCAMFRMKNLRVAF 68
Query: 253 --SDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNMLIA 302
+GM+V+ +S + P D L + P+G+ L ++F ++ L A
Sbjct: 69 RPQNGMQVLVRANVSLYEPRGDYQLIIDSMHPAGEGLLQ-QQFEALKMKLAA 119
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,895,369
Number of Sequences: 539616
Number of extensions: 5017204
Number of successful extensions: 12487
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 12472
Number of HSP's gapped (non-prelim): 22
length of query: 331
length of database: 191,569,459
effective HSP length: 118
effective length of query: 213
effective length of database: 127,894,771
effective search space: 27241586223
effective search space used: 27241586223
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)