Query 020092
Match_columns 331
No_of_seqs 260 out of 807
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 06:57:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020092.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020092hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02577 DNase-RNase: Bifuncti 100.0 4.3E-35 9.3E-40 251.5 14.4 125 132-260 7-131 (135)
2 COG1259 Uncharacterized conser 100.0 5.4E-33 1.2E-37 243.2 15.7 126 132-260 12-137 (151)
3 PF02151 UVR: UvrB/uvrC motif; 98.2 2.4E-06 5.3E-11 58.3 4.8 34 291-324 2-36 (36)
4 COG3880 Modulator of heat shoc 98.2 1.6E-06 3.5E-11 77.9 5.1 39 288-326 133-172 (176)
5 PRK05298 excinuclease ABC subu 94.7 0.046 1E-06 58.3 5.4 36 291-326 613-649 (652)
6 COG0556 UvrB Helicase subunit 94.6 0.049 1.1E-06 57.5 5.1 38 289-326 622-660 (663)
7 TIGR00631 uvrb excinuclease AB 93.9 0.057 1.2E-06 57.9 4.0 32 291-322 623-655 (655)
8 PRK00558 uvrC excinuclease ABC 93.3 0.1 2.2E-06 55.5 4.7 35 291-325 202-237 (598)
9 PRK07883 hypothetical protein; 93.0 0.11 2.5E-06 54.6 4.6 32 292-323 407-439 (557)
10 PRK12306 uvrC excinuclease ABC 92.2 0.18 3.9E-06 52.9 4.7 32 292-323 193-225 (519)
11 PRK14666 uvrC excinuclease ABC 91.9 0.19 4.2E-06 54.4 4.6 34 291-324 201-235 (694)
12 PRK14668 uvrC excinuclease ABC 91.6 0.24 5.1E-06 52.6 4.8 32 292-323 200-232 (577)
13 TIGR00194 uvrC excinuclease AB 91.5 0.25 5.3E-06 52.5 4.8 32 292-323 195-227 (574)
14 PRK14672 uvrC excinuclease ABC 91.3 0.24 5.3E-06 53.6 4.6 32 292-323 206-238 (691)
15 PRK14667 uvrC excinuclease ABC 91.3 0.25 5.3E-06 52.4 4.6 34 291-324 199-233 (567)
16 PRK14670 uvrC excinuclease ABC 91.2 0.26 5.6E-06 52.4 4.6 33 292-324 178-211 (574)
17 PRK14671 uvrC excinuclease ABC 91.0 0.27 5.9E-06 52.6 4.6 32 292-323 216-248 (621)
18 PRK14669 uvrC excinuclease ABC 91.0 0.27 5.9E-06 52.7 4.6 34 291-324 203-237 (624)
19 COG0322 UvrC Nuclease subunit 88.9 0.52 1.1E-05 50.2 4.6 33 292-324 203-236 (581)
20 PF14305 ATPgrasp_TupA: TupA-l 43.0 59 0.0013 30.6 5.8 47 172-218 172-220 (239)
21 PF10130 PIN_2: PIN domain; I 42.8 18 0.00039 31.4 2.2 72 177-257 50-121 (133)
22 PF12386 Peptidase_C71: Pseudo 41.6 84 0.0018 27.8 6.0 43 176-218 56-99 (142)
23 PF11464 Rbsn: Rabenosyn Rab b 36.2 1.1E+02 0.0023 22.1 4.8 35 291-325 3-38 (42)
24 PF13670 PepSY_2: Peptidase pr 32.3 1.9E+02 0.0041 22.4 6.3 47 179-229 29-75 (83)
25 KOG4825 Component of synaptic 31.4 34 0.00073 36.2 2.3 32 293-324 209-241 (666)
26 PRK13169 DNA replication intia 30.0 1.2E+02 0.0025 26.0 5.0 34 290-323 21-57 (110)
27 COG5509 Uncharacterized small 29.2 66 0.0014 25.0 3.0 26 304-329 27-52 (65)
28 PF12510 Smoothelin: Smootheli 29.0 1.7E+02 0.0037 22.1 5.1 31 293-325 24-54 (54)
29 TIGR00638 Mop molybdenum-pteri 27.4 1.8E+02 0.004 21.0 5.2 51 195-247 8-58 (69)
30 PF04420 CHD5: CHD5-like prote 24.3 52 0.0011 29.3 2.0 37 290-326 46-83 (161)
31 PRK10947 global DNA-binding tr 21.6 2.2E+02 0.0048 25.0 5.3 33 290-322 23-55 (135)
32 PF14334 DUF4390: Domain of un 21.4 3.6E+02 0.0077 23.8 6.7 45 192-249 5-49 (165)
33 PF08700 Vps51: Vps51/Vps67; 21.2 2.5E+02 0.0054 21.5 5.1 36 290-325 32-67 (87)
No 1
>PF02577 DNase-RNase: Bifunctional nuclease; InterPro: IPR003729 This entry describes proteins of unknown function. The structure has been determined for one member of this group, the hypothetical protein TM0160 from Thermotoga maritima, which was found to consist of a duplication of two beta(3)-alpha(2) structural repeats, forming a single barrel-like beta-sheet [].; PDB: 1SJ5_A 1VJL_A.
Probab=100.00 E-value=4.3e-35 Score=251.46 Aligned_cols=125 Identities=29% Similarity=0.473 Sum_probs=104.9
Q ss_pred cCCCCCCCcEEEEEeeCCCceEEEEEEChHHHHHHHHHHcccCCCCCChhHHHHHHHHHhCCeEeEEEEEeeECCEEEEE
Q 020092 132 HLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQ 211 (331)
Q Consensus 132 aLd~~a~~pvIVL~~edg~~r~LPI~Ig~~EA~aI~~aL~~~~~~RPlThDLL~eiLe~lg~~v~~V~I~~l~dGvFyA~ 211 (331)
.++...++|++||++++++ +.||||||..||.+|+.++++.+++||+|||||.++++++|.++.+|+|++++||+|||+
T Consensus 7 ~~~~~~~~~vvlL~~~~~~-~~lpI~i~~~ea~~i~~~~~~~~~~RP~thdLl~~~l~~lg~~v~~V~I~~~~dg~f~A~ 85 (135)
T PF02577_consen 7 SVDEPSGQPVVLLREEDGD-RVLPIWIGAFEAQAIALALEGEKPPRPLTHDLLSDLLEALGAEVERVVIDDLEDGVFYAR 85 (135)
T ss_dssp EEETTTTEEEEEEEETTSS-EEEEEE--HHHHHHHHHHHCT---SS--HHHHHHHHHHHTTEEEEEEEEEEEETTEEEEE
T ss_pred EEcCCCCceEEEEEEcCCC-EEEEEEECHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHcCCEEEEEEEEEEECCEEEEE
Confidence 3445567899999999876 899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCccceEEEEeCChHHHHHHHHHcCCCEEEehhhHhhcCeeeee
Q 020092 212 LYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIE 260 (331)
Q Consensus 212 L~l~~~g~~~e~~~IDaRPSDAIaLAlR~k~PIyV~eeVl~~agi~v~e 260 (331)
|++.+++ ++.++|+||||||+||+|+++||||+++|++++++++..
T Consensus 86 L~l~~~~---~~~~id~RpSDAiaLAl~~~~PI~v~~~vl~~~~~~~~~ 131 (135)
T PF02577_consen 86 LVLRQGG---EEIEIDARPSDAIALALRFGAPIYVSEEVLDEAGVPVEE 131 (135)
T ss_dssp EEEEETT---TEEEEEE-HHHHHHHHHHHT--EEEEHHHHHHH-EE--H
T ss_pred EEEecCC---EEEEEECcHhHHHHHHHHhCCCEEEeHHHHhhcCCCCch
Confidence 9999766 789999999999999999999999999999999999874
No 2
>COG1259 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.4e-33 Score=243.24 Aligned_cols=126 Identities=26% Similarity=0.446 Sum_probs=115.0
Q ss_pred cCCCCCCCcEEEEEeeCCCceEEEEEEChHHHHHHHHHHcccCCCCCChhHHHHHHHHHhCCeEeEEEEEeeECCEEEEE
Q 020092 132 HLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQ 211 (331)
Q Consensus 132 aLd~~a~~pvIVL~~edg~~r~LPI~Ig~~EA~aI~~aL~~~~~~RPlThDLL~eiLe~lg~~v~~V~I~~l~dGvFyA~ 211 (331)
++..-...|++++...+++++.||||||..||.+|+.++++..++||+||||+.++++.++.+|.+|+|++++||||||+
T Consensus 12 ~~~~~~~~~~~v~~~~~~~~~~lPI~Ig~~ea~si~~~l~~~~p~RP~tHdll~~i~~~l~~~v~kVvI~d~~d~tyyA~ 91 (151)
T COG1259 12 FFVPVSSFPTVVLLLEGGDNRVLPIYIGASEALAIAKALEGVEPPRPLTHDLLVEIFEELGARVEKVVIDDLIDNTYYAT 91 (151)
T ss_pred EEecccCCceEEEEEEcCCCeEEEEEEeHHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhCCcEEEEEEEEeccCeEEEE
Confidence 44445677866666677777899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCccceEEEEeCChHHHHHHHHHcCCCEEEehhhHhhcCeeeee
Q 020092 212 LYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIE 260 (331)
Q Consensus 212 L~l~~~g~~~e~~~IDaRPSDAIaLAlR~k~PIyV~eeVl~~agi~v~e 260 (331)
|++++++ ....+||||||||+||+|.++||||.|+|+++++++..+
T Consensus 92 L~~~~~~---~~~~iDaRPSDaI~LAlr~~~PI~V~e~v~~~a~~~~~~ 137 (151)
T COG1259 92 LILEQDD---GKIQIDARPSDAIALALRVGAPIYVAEEVLDEAEIEIED 137 (151)
T ss_pred EEEEcCC---ceEEEecccchHHHHHHHhCCCEEEehhhhhhhcCcCcc
Confidence 9999887 469999999999999999999999999999999888764
No 3
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=98.21 E-value=2.4e-06 Score=58.34 Aligned_cols=34 Identities=29% Similarity=0.449 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhh
Q 020092 291 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAK 324 (331)
Q Consensus 291 ~e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~ 324 (331)
..+..|+..|..|++ ++||+||.|||+|..|+++
T Consensus 2 ~~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~q 36 (36)
T PF02151_consen 2 KLIKELEEKMEEAVENEDFEKAARLRDQIKALKKQ 36 (36)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHcC
Confidence 457889999999999 9999999999999999864
No 4
>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]
Probab=98.21 E-value=1.6e-06 Score=77.91 Aligned_cols=39 Identities=26% Similarity=0.416 Sum_probs=35.4
Q ss_pred cchhhHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhhc
Q 020092 288 LDTKEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKRN 326 (331)
Q Consensus 288 ~~~~e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~~~ 326 (331)
..+.+|.+|++.|+++|+ |+||+||.+||||+.|+.+..
T Consensus 133 ~~~~~I~~L~e~Lq~~i~~EefEeAA~iRDqIr~Lk~k~~ 172 (176)
T COG3880 133 NPKRKIIALKEALQDLIEREEFEEAAVIRDQIRALKAKNG 172 (176)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 357899999999999999 999999999999999997743
No 5
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=94.67 E-value=0.046 Score=58.35 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhhc
Q 020092 291 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKRN 326 (331)
Q Consensus 291 ~e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~~~ 326 (331)
..++.|+++|++|.+ ++||+||++||+|+.|++...
T Consensus 613 ~~~~~l~~~M~~aa~~l~fE~Aa~~Rd~i~~l~~~~~ 649 (652)
T PRK05298 613 KLIKELEKQMKEAAKNLEFEEAARLRDEIKELKEELL 649 (652)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence 456779999999988 999999999999999987654
No 6
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=94.57 E-value=0.049 Score=57.47 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=31.3
Q ss_pred chhhHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhhc
Q 020092 289 DTKEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKRN 326 (331)
Q Consensus 289 ~~~e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~~~ 326 (331)
..+.++.|+++|.+|.+ -+||+||++||+|++|++...
T Consensus 622 ~~~~I~~Le~~M~~aA~~l~FE~Aa~lRD~i~~L~~~~~ 660 (663)
T COG0556 622 LEKLIKKLEKEMKEAAKNLEFEEAARLRDEIKELKEELL 660 (663)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 34567778887777776 999999999999999997653
No 7
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=93.89 E-value=0.057 Score=57.93 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHH
Q 020092 291 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLR 322 (331)
Q Consensus 291 ~e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~ 322 (331)
..++.|+++|++|.+ ++||+||++||+|+.|+
T Consensus 623 ~~i~~l~~~M~~aa~~l~FE~Aa~~RD~i~~L~ 655 (655)
T TIGR00631 623 KLIKQLEKEMKQAARNLEFEEAARLRDEILELK 655 (655)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 345678888888887 99999999999999874
No 8
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=93.29 E-value=0.1 Score=55.49 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhh
Q 020092 291 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKR 325 (331)
Q Consensus 291 ~e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~~ 325 (331)
.-++.|++.|++|.+ ++||+||.+||+|..|++-.
T Consensus 202 ~~i~~L~~~M~~aa~~l~FE~Aa~~RD~i~aL~~~~ 237 (598)
T PRK00558 202 EVLKELEEKMEEASENLEFERAARYRDQIQALRRVQ 237 (598)
T ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence 346778888888887 99999999999999998643
No 9
>PRK07883 hypothetical protein; Validated
Probab=93.04 E-value=0.11 Score=54.57 Aligned_cols=32 Identities=28% Similarity=0.419 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020092 292 EFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA 323 (331)
Q Consensus 292 e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~ 323 (331)
-++.|++.|++|-+ .+||+||++||+|..++.
T Consensus 407 ~~~~l~~~M~~aa~~l~FE~Aa~~Rd~i~~l~~ 439 (557)
T PRK07883 407 VLAALRARIDRLAAAERFEEAARLRDRLAALLR 439 (557)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 35778888888887 999999999999999985
No 10
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=92.25 E-value=0.18 Score=52.92 Aligned_cols=32 Identities=9% Similarity=0.250 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020092 292 EFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA 323 (331)
Q Consensus 292 e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~ 323 (331)
-++.|++.|++|-+ .+||+||++||.|..++.
T Consensus 193 ~~~~L~~~M~~aa~~l~FE~Aa~~RD~l~~l~~ 225 (519)
T PRK12306 193 LIEKLEEEMAEKAKNQQFERALVIRDEINAIEN 225 (519)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 45778888888887 999999999999999985
No 11
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=91.92 E-value=0.19 Score=54.37 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhh
Q 020092 291 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAK 324 (331)
Q Consensus 291 ~e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~ 324 (331)
.-++.|++.|++|.+ .+||+||++||+|+.++.-
T Consensus 201 ~l~~~L~~~M~~AAe~l~FE~AA~lRD~i~aL~~~ 235 (694)
T PRK14666 201 ELVDALRTEMEAASEALEFERAAVLRDQIRAVERT 235 (694)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 345778888888888 9999999999999999753
No 12
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=91.58 E-value=0.24 Score=52.62 Aligned_cols=32 Identities=28% Similarity=0.398 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020092 292 EFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA 323 (331)
Q Consensus 292 e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~ 323 (331)
-++.|++.|++|-+ .+||+||++||+|+.++.
T Consensus 200 ~~~~l~~~m~~aa~~l~FE~Aa~~Rd~i~~l~~ 232 (577)
T PRK14668 200 LADPLRREMEAAAQAQEFERAANLRDRLEAVEA 232 (577)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 35678888888887 999999999999999985
No 13
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=91.47 E-value=0.25 Score=52.48 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020092 292 EFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA 323 (331)
Q Consensus 292 e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~ 323 (331)
-++.|++.|++|-+ .+||+||++||+|+.++.
T Consensus 195 ~~~~L~~~M~~aa~~l~FE~Aa~~Rd~i~~l~~ 227 (574)
T TIGR00194 195 VIKELEQKMEKASENLEFEEAARIRDQIAAVRE 227 (574)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 35668888888887 999999999999999985
No 14
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=91.31 E-value=0.24 Score=53.56 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020092 292 EFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA 323 (331)
Q Consensus 292 e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~ 323 (331)
-++.|++.|++|-+ .+||+||++||+|+.++.
T Consensus 206 ll~~L~~~M~~AA~~l~FE~AA~lRD~i~aL~~ 238 (691)
T PRK14672 206 TVARLEKRMKRAVRQEAFEAAARIRDDIQAIRC 238 (691)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 35778888888887 999999999999999984
No 15
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=91.30 E-value=0.25 Score=52.44 Aligned_cols=34 Identities=15% Similarity=0.111 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhh
Q 020092 291 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAK 324 (331)
Q Consensus 291 ~e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~ 324 (331)
.-++.|++.|++|-+ .+||+||++||+|+.++.-
T Consensus 199 ~l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~~~ 233 (567)
T PRK14667 199 EVLPELYDKIEEYSQKLMFEKAAVIRDQILALENL 233 (567)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 345778888888887 9999999999999999753
No 16
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=91.17 E-value=0.26 Score=52.38 Aligned_cols=33 Identities=12% Similarity=0.191 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhh
Q 020092 292 EFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAK 324 (331)
Q Consensus 292 e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~ 324 (331)
-++.|++.|++|-+ .+||+||++||+|..++.-
T Consensus 178 ~~~~L~~~M~~aa~~l~FE~Aa~~RD~i~al~~~ 211 (574)
T PRK14670 178 LLSQIEIKMKEAIQKEDFEAAIKLKETKRSLIEI 211 (574)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 35678888888887 9999999999999999753
No 17
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=91.00 E-value=0.27 Score=52.60 Aligned_cols=32 Identities=16% Similarity=0.322 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020092 292 EFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA 323 (331)
Q Consensus 292 e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~ 323 (331)
-++.|++.|++|-+ .+||+||++||+|..++.
T Consensus 216 l~~~L~~~M~~as~~l~FE~Aa~~RD~i~~l~~ 248 (621)
T PRK14671 216 LIRSLTEEMQRAAAELKFEEAAELKDQIESLKR 248 (621)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 35778888888887 999999999999999974
No 18
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=90.99 E-value=0.27 Score=52.69 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhh
Q 020092 291 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAK 324 (331)
Q Consensus 291 ~e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~ 324 (331)
.-++.|++.|++|-+ .+||+||++||+|+.++.-
T Consensus 203 ~l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~~~ 237 (624)
T PRK14669 203 DLARSLRARMEAAALEMQFELAAKYRDLITTVEEL 237 (624)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 345678888888887 9999999999999998753
No 19
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=88.89 E-value=0.52 Score=50.22 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhh
Q 020092 292 EFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAK 324 (331)
Q Consensus 292 e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~ 324 (331)
-+..|++.|++|-+ .+||.||++||+|..++.-
T Consensus 203 v~~~L~~~M~~As~~l~FE~Aa~~RD~i~al~~l 236 (581)
T COG0322 203 VLQELEEKMEEASENLDFERAARLRDQIKALEKL 236 (581)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 35678888888887 9999999999999999753
No 20
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=42.97 E-value=59 Score=30.64 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=40.7
Q ss_pred ccCCCCCChhHHHHHHHHHhC--CeEeEEEEEeeECCEEEEEEEEeecC
Q 020092 172 NVQIARPTLYQVVKEMIEKMG--YEVRLVRVTKRVHEAYFAQLYLTKVG 218 (331)
Q Consensus 172 ~~~~~RPlThDLL~eiLe~lg--~~v~~V~I~~l~dGvFyA~L~l~~~g 218 (331)
....++|-..+=|.++.+.|. ....||-.+...+++||..|.+..++
T Consensus 172 ~~~~~kP~~l~emi~iA~~Ls~~f~fvRVDlY~~~~~iyFGElTf~p~~ 220 (239)
T PF14305_consen 172 DEDIPKPKNLEEMIEIAEKLSKGFPFVRVDLYNVDGKIYFGELTFTPGA 220 (239)
T ss_pred CCCCCCChhHHHHHHHHHHHccCCCEEEEEEEEeCCcEEEEeeecCCCC
Confidence 457899999999999999994 56778888888999999999998665
No 21
>PF10130 PIN_2: PIN domain; InterPro: IPR019298 This entry represents a set of bacterial and archaeal proteins that are predicted to be RNases (from similarities to 5'-exonucleases).
Probab=42.78 E-value=18 Score=31.40 Aligned_cols=72 Identities=11% Similarity=0.127 Sum_probs=41.1
Q ss_pred CCChhHHHHHHHHHhCCeEeEEEEEeeECCEEEEEEEEeecCccceEEEEeCChHHHHHHHHHcCCCEEEehhhHhhcCe
Q 020092 177 RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGM 256 (331)
Q Consensus 177 RPlThDLL~eiLe~lg~~v~~V~I~~l~dGvFyA~L~l~~~g~~~e~~~IDaRPSDAIaLAlR~k~PIyV~eeVl~~agi 256 (331)
+-++-+-+..++..+- ..|.|. ..+.|. =+..+.. .....+|-.=-.-||||+..+||||..+.=+...|+
T Consensus 50 ~~l~~~~~~~~l~~l~---~~I~iv--~~~~~~--~~~~~A~--~~~~~~D~~D~p~vALaL~l~~~IWT~Dkdl~~~Gl 120 (133)
T PF10130_consen 50 SKLSEEELEEVLNILF---SRIKIV--PEEIYS--ENIEEAR--EIIRDRDPDDWPFVALALQLNAPIWTEDKDLFGSGL 120 (133)
T ss_pred hCCCHHHHHHHHHHHH---hheEEe--cHHHhH--HHHHHHH--HHhcCCCcchHHHHHHHHHcCCCeecCcHHHHhcCc
Confidence 4456666666666552 233333 344443 1111110 011234555555799999999999999988876675
Q ss_pred e
Q 020092 257 R 257 (331)
Q Consensus 257 ~ 257 (331)
.
T Consensus 121 ~ 121 (133)
T PF10130_consen 121 A 121 (133)
T ss_pred c
Confidence 4
No 22
>PF12386 Peptidase_C71: Pseudomurein endo-isopeptidase Pei; InterPro: IPR022119 This peptidase has the catalytic triad C-H-D at the C-terminal end, a triad similar to that in thiol proteases and animal transglutaminases. It catalyses the in vitro lysis of M. marburgensis cells under reducing conditions and exhibits characteristics of metal-activated peptidases.
Probab=41.58 E-value=84 Score=27.80 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=33.8
Q ss_pred CCCChhHHHHHHHHHhCCeEeEEEEEee-ECCEEEEEEEEeecC
Q 020092 176 ARPTLYQVVKEMIEKMGYEVRLVRVTKR-VHEAYFAQLYLTKVG 218 (331)
Q Consensus 176 ~RPlThDLL~eiLe~lg~~v~~V~I~~l-~dGvFyA~L~l~~~g 218 (331)
.--..-+||..+++.||+.|.-+.+--. .+|++|..+.|.-.+
T Consensus 56 NCtD~~Qlf~~v~~~lGY~Vq~~HVk~rc~~g~wygH~~LRv~~ 99 (142)
T PF12386_consen 56 NCTDACQLFYRVIESLGYDVQFEHVKCRCNSGKWYGHYRLRVKH 99 (142)
T ss_pred CchhHHHHHHHHHHhcCceEEEEEEEEEecCCceeeEEEEEecc
Confidence 3344578999999999998776666544 699999999998765
No 23
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=36.20 E-value=1.1e+02 Score=22.06 Aligned_cols=35 Identities=17% Similarity=0.410 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhh
Q 020092 291 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKR 325 (331)
Q Consensus 291 ~e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~~ 325 (331)
.++..++.+++.|-. -+||+.+.|..-|+.|+..-
T Consensus 3 eQi~~I~~~I~qAk~~~r~dEV~~L~~NL~EL~~e~ 38 (42)
T PF11464_consen 3 EQINIIESYIKQAKAARRFDEVATLEENLRELQDEI 38 (42)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 467889999999998 99999999999999988654
No 24
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=32.34 E-value=1.9e+02 Score=22.43 Aligned_cols=47 Identities=19% Similarity=0.126 Sum_probs=33.2
Q ss_pred ChhHHHHHHHHHhCCeEeEEEEEeeECCEEEEEEEEeecCccceEEEEeCC
Q 020092 179 TLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLR 229 (331)
Q Consensus 179 lThDLL~eiLe~lg~~v~~V~I~~l~dGvFyA~L~l~~~g~~~e~~~IDaR 229 (331)
++..-+...++..|++|.+|.+++ +|.|-.+....++. .-.+.+|.+
T Consensus 29 ~~~~~~~~~l~~~G~~v~~ve~~~--~g~yev~~~~~dG~--~~ev~vD~~ 75 (83)
T PF13670_consen 29 LSIEQAVAKLEAQGYQVREVEFDD--DGCYEVEARDKDGK--KVEVYVDPA 75 (83)
T ss_pred CCHHHHHHHHHhcCCceEEEEEcC--CCEEEEEEEECCCC--EEEEEEcCC
Confidence 457777788888999999999864 77899986665442 134455544
No 25
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=31.37 E-value=34 Score=36.22 Aligned_cols=32 Identities=28% Similarity=0.304 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhh
Q 020092 293 FNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAK 324 (331)
Q Consensus 293 ~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~ 324 (331)
+++|++.--.||+ |+|..|-...|||.+++.+
T Consensus 209 leelEndKgcAVadEDfdlAkdkkdeiealRae 241 (666)
T KOG4825|consen 209 LEELENDKGCAVADEDFDLAKDKKDEIEALRAE 241 (666)
T ss_pred HHHHhhcccccccchhhhHHHHHHHHHHHHHHH
Confidence 3444444445666 7777777777777777654
No 26
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=29.98 E-value=1.2e+02 Score=25.96 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHHHHHHhhhHHHHH---HHHHHHhHHh
Q 020092 290 TKEFNLVRNMLIAAVEERYRDAAQ---WRDKLGQLRA 323 (331)
Q Consensus 290 ~~e~~~L~~~L~~aieE~YE~AA~---lRDeI~~l~~ 323 (331)
..++..|++.+...++||-+.-.. ||+.|.++++
T Consensus 21 ~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 21 LKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467888999999999999887665 8999988743
No 27
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=29.21 E-value=66 Score=24.99 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=20.4
Q ss_pred HHhhhHHHHHHHHHHHhHHhhhcccc
Q 020092 304 VEERYRDAAQWRDKLGQLRAKRNLRK 329 (331)
Q Consensus 304 ieE~YE~AA~lRDeI~~l~~~~~~~~ 329 (331)
|.|=-|+-|.|++||.+++.+.+.|+
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~kK~ 52 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAKKK 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33555778999999999998887665
No 28
>PF12510 Smoothelin: Smoothelin cytoskeleton protein; InterPro: IPR022189 This domain family is found in eukaryotes, and is approximately 50 amino acids in length. The family is found in association with PF00307 from PFAM. Smoothelin is a cytoskeletal protein specifically expressed in differentiated smooth muscle cells and has been shown to co-localize with smooth muscle alpha actin.
Probab=29.04 E-value=1.7e+02 Score=22.13 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhHHhhh
Q 020092 293 FNLVRNMLIAAVEERYRDAAQWRDKLGQLRAKR 325 (331)
Q Consensus 293 ~~~L~~~L~~aieE~YE~AA~lRDeI~~l~~~~ 325 (331)
.+.|++||+.+ .+||+=-.||-.|+.+++++
T Consensus 24 e~~L~kmLe~~--~dyeeRr~IRaaiR~lr~~~ 54 (54)
T PF12510_consen 24 EEVLEKMLEAT--TDYEERRRIRAAIRELRKKK 54 (54)
T ss_pred HHHHHHHHHHh--ccHHHHHHHHHHHHHHHhcC
Confidence 34466665544 68999999999999998753
No 29
>TIGR00638 Mop molybdenum-pterin binding domain. This model describes a multigene family of molybdenum-pterin binding proteins of about 70 amino acids in Clostridium pasteurianum, as a tandemly-repeated domain C-terminal to an unrelated domain in ModE, a molybdate transport gene repressor of E. coli, and in single or tandemly paired domains in several related proteins.
Probab=27.38 E-value=1.8e+02 Score=21.04 Aligned_cols=51 Identities=8% Similarity=-0.050 Sum_probs=39.1
Q ss_pred EeEEEEEeeECCEEEEEEEEeecCccceEEEEeCChHHHHHHHHHcCCCEEEe
Q 020092 195 VRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVN 247 (331)
Q Consensus 195 v~~V~I~~l~dGvFyA~L~l~~~g~~~e~~~IDaRPSDAIaLAlR~k~PIyV~ 247 (331)
.....|.++..+...+++.+.-++. ..+...+-+..+-.|+++-+-|+|+.
T Consensus 8 ~l~g~I~~i~~~g~~~~v~l~~~~~--~~l~a~i~~~~~~~l~l~~G~~v~~~ 58 (69)
T TIGR00638 8 QLKGKVVAIEDGDVNAEVDLLLGGG--TKLTAVITLESVAELGLKPGKEVYAV 58 (69)
T ss_pred EEEEEEEEEEECCCeEEEEEEECCC--CEEEEEecHHHHhhCCCCCCCEEEEE
Confidence 3456777777777788888876542 35666777889999999999999875
No 30
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=24.28 E-value=52 Score=29.28 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=26.0
Q ss_pred hhhHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhhc
Q 020092 290 TKEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKRN 326 (331)
Q Consensus 290 ~~e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~~~ 326 (331)
..|+..+++++...=. ++|-+.|++|-++.+++++.+
T Consensus 46 ~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~ 83 (161)
T PF04420_consen 46 RKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELE 83 (161)
T ss_dssp HHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556655555433 899999999999998876653
No 31
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=21.61 E-value=2.2e+02 Score=25.03 Aligned_cols=33 Identities=12% Similarity=0.124 Sum_probs=21.8
Q ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHhHH
Q 020092 290 TKEFNLVRNMLIAAVEERYRDAAQWRDKLGQLR 322 (331)
Q Consensus 290 ~~e~~~L~~~L~~aieE~YE~AA~lRDeI~~l~ 322 (331)
-.+++.+.+.|..+|+|+-|+++..+.++..+.
T Consensus 23 ~e~Lee~~ekl~~vv~er~ee~~~~~~~~~er~ 55 (135)
T PRK10947 23 LETLEEMLEKLEVVVNERREEESAAAAEVEERT 55 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777788888877776666665555543
No 32
>PF14334 DUF4390: Domain of unknown function (DUF4390)
Probab=21.45 E-value=3.6e+02 Score=23.76 Aligned_cols=45 Identities=13% Similarity=0.219 Sum_probs=35.0
Q ss_pred CCeEeEEEEEeeECCEEEEEEEEeecCccceEEEEeCChHHHHHHHHHcCCCEEEehh
Q 020092 192 GYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKY 249 (331)
Q Consensus 192 g~~v~~V~I~~l~dGvFyA~L~l~~~g~~~e~~~IDaRPSDAIaLAlR~k~PIyV~ee 249 (331)
++++..+.++ ..+|.|+.. ..+|..-++.+.=|+..|+|++..=+
T Consensus 5 ~~~i~~~~~~-~~~~~l~l~------------a~~~~~l~~~l~~AL~~Gipl~f~~~ 49 (165)
T PF14334_consen 5 SIEIRSAELE-NSDGGLYLS------------ADVDFELSPELEDALKNGIPLYFVFE 49 (165)
T ss_pred ccEEEEEEEE-EeCCEEEEE------------EEEeccCCHHHHHHHHcCCeEEEEEE
Confidence 5678888888 567776632 23788889999999999999998754
No 33
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=21.24 E-value=2.5e+02 Score=21.54 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=30.0
Q ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHhHHhhh
Q 020092 290 TKEFNLVRNMLIAAVEERYRDAAQWRDKLGQLRAKR 325 (331)
Q Consensus 290 ~~e~~~L~~~L~~aieE~YE~AA~lRDeI~~l~~~~ 325 (331)
..++...++.|+..|-++|.+-...-|+|..++...
T Consensus 32 ~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~ 67 (87)
T PF08700_consen 32 RQEIEEKDEELRKLVYENYRDFIEASDEISSMENDL 67 (87)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 355677888899999999999999999999988653
Done!