Query 020093
Match_columns 331
No_of_seqs 335 out of 1464
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 06:57:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020093.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020093hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02921 naphthoate synthase 100.0 8E-70 1.7E-74 514.3 34.0 327 5-331 1-327 (327)
2 COG0447 MenB Dihydroxynaphthoi 100.0 1.8E-62 3.9E-67 422.4 17.1 266 65-331 14-282 (282)
3 KOG1680 Enoyl-CoA hydratase [L 100.0 2E-61 4.3E-66 431.6 22.7 251 71-327 39-290 (290)
4 PRK07396 dihydroxynaphthoic ac 100.0 2E-60 4.4E-65 441.5 30.0 265 65-331 9-273 (273)
5 TIGR01929 menB naphthoate synt 100.0 3.6E-59 7.8E-64 430.1 28.3 258 69-327 2-259 (259)
6 TIGR03210 badI 2-ketocyclohexa 100.0 4.4E-59 9.5E-64 428.8 28.5 256 68-327 1-256 (256)
7 PRK09076 enoyl-CoA hydratase; 100.0 3.9E-58 8.4E-63 423.1 29.0 255 68-326 2-257 (258)
8 PRK05862 enoyl-CoA hydratase; 100.0 5.1E-58 1.1E-62 422.1 28.9 254 68-327 3-257 (257)
9 PRK06142 enoyl-CoA hydratase; 100.0 3.7E-58 8.1E-63 426.3 28.0 258 66-326 3-272 (272)
10 PRK05980 enoyl-CoA hydratase; 100.0 4.2E-58 9.1E-63 423.4 27.6 253 70-324 4-260 (260)
11 PLN02600 enoyl-CoA hydratase 100.0 5.7E-58 1.2E-62 420.3 27.8 249 78-327 2-251 (251)
12 PRK07799 enoyl-CoA hydratase; 100.0 8.2E-58 1.8E-62 422.1 28.8 257 67-327 3-263 (263)
13 PRK05809 3-hydroxybutyryl-CoA 100.0 9.7E-58 2.1E-62 420.9 28.8 258 67-327 2-260 (260)
14 PRK06563 enoyl-CoA hydratase; 100.0 6E-58 1.3E-62 421.1 27.3 253 71-326 1-254 (255)
15 PRK07657 enoyl-CoA hydratase; 100.0 1.2E-57 2.7E-62 420.2 28.6 257 69-327 3-260 (260)
16 PRK06127 enoyl-CoA hydratase; 100.0 1.1E-57 2.5E-62 422.3 28.4 257 69-327 11-269 (269)
17 PRK08150 enoyl-CoA hydratase; 100.0 1.5E-57 3.2E-62 418.4 28.8 252 69-326 2-254 (255)
18 PRK09674 enoyl-CoA hydratase-i 100.0 1.5E-57 3.3E-62 418.4 28.5 253 69-327 2-255 (255)
19 PRK08140 enoyl-CoA hydratase; 100.0 1.7E-57 3.7E-62 419.7 28.9 256 68-327 3-262 (262)
20 PRK06144 enoyl-CoA hydratase; 100.0 1.3E-57 2.8E-62 420.5 28.0 254 68-326 7-261 (262)
21 PRK06494 enoyl-CoA hydratase; 100.0 1.6E-57 3.5E-62 419.2 28.5 255 67-327 2-259 (259)
22 TIGR02280 PaaB1 phenylacetate 100.0 1.4E-57 3.1E-62 418.9 27.8 252 71-326 1-255 (256)
23 PRK07658 enoyl-CoA hydratase; 100.0 1.8E-57 4E-62 418.4 28.2 255 69-327 2-257 (257)
24 PRK09245 enoyl-CoA hydratase; 100.0 1.5E-57 3.2E-62 421.0 27.6 256 69-327 3-266 (266)
25 PRK05995 enoyl-CoA hydratase; 100.0 2.3E-57 5E-62 418.9 28.7 257 67-327 2-262 (262)
26 PRK08139 enoyl-CoA hydratase; 100.0 2.9E-57 6.3E-62 418.9 29.2 256 68-327 10-266 (266)
27 PLN02664 enoyl-CoA hydratase/d 100.0 2.5E-57 5.3E-62 421.4 27.6 254 71-327 10-275 (275)
28 PRK05674 gamma-carboxygeranoyl 100.0 3.3E-57 7.2E-62 418.3 28.2 257 67-327 3-264 (265)
29 PRK07327 enoyl-CoA hydratase; 100.0 3.8E-57 8.3E-62 418.6 28.3 260 65-326 7-267 (268)
30 PRK08252 enoyl-CoA hydratase; 100.0 4.3E-57 9.2E-62 415.2 28.3 251 69-327 3-254 (254)
31 PRK08258 enoyl-CoA hydratase; 100.0 5.3E-57 1.2E-61 419.5 28.8 255 70-327 18-277 (277)
32 PRK08321 naphthoate synthase; 100.0 9.5E-57 2.1E-61 422.2 30.4 273 54-329 11-300 (302)
33 PRK05981 enoyl-CoA hydratase; 100.0 6.5E-57 1.4E-61 416.7 28.2 257 67-326 2-265 (266)
34 PRK07659 enoyl-CoA hydratase; 100.0 5.5E-57 1.2E-61 415.9 27.0 256 67-327 4-260 (260)
35 PRK07468 enoyl-CoA hydratase; 100.0 8.3E-57 1.8E-61 415.1 28.2 255 68-326 3-261 (262)
36 PRK11423 methylmalonyl-CoA dec 100.0 8E-57 1.7E-61 414.9 27.9 256 67-327 2-261 (261)
37 PRK08138 enoyl-CoA hydratase; 100.0 1.4E-56 3E-61 413.4 29.2 253 69-326 7-260 (261)
38 PRK08260 enoyl-CoA hydratase; 100.0 1.1E-56 2.3E-61 421.2 28.5 257 68-327 3-278 (296)
39 PRK06210 enoyl-CoA hydratase; 100.0 9.2E-57 2E-61 417.0 27.8 258 67-327 3-272 (272)
40 PRK03580 carnitinyl-CoA dehydr 100.0 2.2E-56 4.8E-61 412.1 28.5 252 70-326 4-260 (261)
41 PRK12478 enoyl-CoA hydratase; 100.0 1.2E-56 2.6E-61 420.6 27.0 257 68-331 4-285 (298)
42 PRK06143 enoyl-CoA hydratase; 100.0 2.5E-56 5.5E-61 410.4 27.5 250 69-321 6-256 (256)
43 PRK05864 enoyl-CoA hydratase; 100.0 3E-56 6.5E-61 414.3 28.1 260 66-327 6-275 (276)
44 PRK07511 enoyl-CoA hydratase; 100.0 4.5E-56 9.8E-61 409.8 28.9 254 69-325 3-259 (260)
45 PRK06495 enoyl-CoA hydratase; 100.0 4E-56 8.7E-61 409.4 27.6 254 67-327 2-257 (257)
46 PRK09120 p-hydroxycinnamoyl Co 100.0 4.7E-56 1E-60 412.6 27.9 254 67-323 6-266 (275)
47 PRK06688 enoyl-CoA hydratase; 100.0 5.2E-56 1.1E-60 409.2 27.9 254 69-327 5-259 (259)
48 PRK07509 enoyl-CoA hydratase; 100.0 1.3E-55 2.7E-60 407.3 27.5 254 68-326 2-262 (262)
49 PRK07260 enoyl-CoA hydratase; 100.0 2.2E-55 4.8E-60 404.1 26.6 251 68-321 1-255 (255)
50 PRK06023 enoyl-CoA hydratase; 100.0 4.2E-55 9.2E-60 401.3 27.4 245 70-319 4-251 (251)
51 PRK07854 enoyl-CoA hydratase; 100.0 7.4E-55 1.6E-59 397.8 28.3 242 71-327 2-243 (243)
52 PRK06072 enoyl-CoA hydratase; 100.0 5.8E-55 1.3E-59 399.7 27.5 246 71-327 2-248 (248)
53 COG1024 CaiD Enoyl-CoA hydrata 100.0 8.3E-55 1.8E-59 400.7 27.8 253 67-324 3-257 (257)
54 PLN02888 enoyl-CoA hydratase 100.0 8.9E-55 1.9E-59 402.0 27.9 249 69-323 9-260 (265)
55 TIGR03189 dienoyl_CoA_hyt cycl 100.0 1.1E-54 2.5E-59 398.3 28.0 246 71-327 3-251 (251)
56 PRK07938 enoyl-CoA hydratase; 100.0 9.6E-55 2.1E-59 398.4 26.0 239 78-322 9-249 (249)
57 PRK08259 enoyl-CoA hydratase; 100.0 1.3E-54 2.8E-59 398.6 26.5 246 69-321 3-249 (254)
58 PRK07112 polyketide biosynthes 100.0 2.1E-54 4.5E-59 397.6 27.6 252 67-326 2-254 (255)
59 PRK05870 enoyl-CoA hydratase; 100.0 1.1E-54 2.4E-59 398.1 25.0 245 69-319 3-249 (249)
60 PRK07827 enoyl-CoA hydratase; 100.0 3.6E-54 7.9E-59 397.1 27.0 252 68-325 5-259 (260)
61 PRK05617 3-hydroxyisobutyryl-C 100.0 8.7E-55 1.9E-59 415.0 22.7 255 70-327 4-326 (342)
62 PLN02874 3-hydroxyisobutyryl-C 100.0 9.2E-54 2E-58 412.7 25.3 256 68-327 10-339 (379)
63 PLN03214 probable enoyl-CoA hy 100.0 3E-53 6.5E-58 394.1 26.1 256 65-322 7-266 (278)
64 PF00378 ECH: Enoyl-CoA hydrat 100.0 9.9E-54 2.1E-58 390.8 22.3 243 73-319 2-245 (245)
65 PRK07110 polyketide biosynthes 100.0 2.2E-52 4.8E-57 382.8 27.4 244 67-317 3-247 (249)
66 PRK06190 enoyl-CoA hydratase; 100.0 3.5E-52 7.6E-57 383.1 27.7 247 68-320 3-253 (258)
67 PLN02157 3-hydroxyisobutyryl-C 100.0 4.1E-52 8.9E-57 401.4 26.2 254 68-326 36-295 (401)
68 PRK08184 benzoyl-CoA-dihydrodi 100.0 3.3E-52 7.1E-57 416.4 25.7 263 65-328 256-549 (550)
69 TIGR03222 benzo_boxC benzoyl-C 100.0 8.5E-52 1.9E-56 412.2 26.7 261 65-327 252-544 (546)
70 KOG1679 Enoyl-CoA hydratase [L 100.0 1.9E-51 4.2E-56 353.6 15.8 258 69-327 27-291 (291)
71 PRK05869 enoyl-CoA hydratase; 100.0 1.5E-50 3.3E-55 364.5 22.4 206 78-286 15-220 (222)
72 PRK08272 enoyl-CoA hydratase; 100.0 1.9E-49 4.1E-54 373.1 26.1 217 65-287 6-246 (302)
73 PRK08290 enoyl-CoA hydratase; 100.0 3.4E-49 7.3E-54 368.7 25.2 237 67-308 2-262 (288)
74 PRK08788 enoyl-CoA hydratase; 100.0 3.8E-48 8.3E-53 360.3 26.9 251 66-318 12-275 (287)
75 PLN02851 3-hydroxyisobutyryl-C 100.0 2E-47 4.4E-52 368.8 28.1 184 69-256 42-228 (407)
76 PRK11730 fadB multifunctional 100.0 5.4E-48 1.2E-52 399.4 25.3 251 70-322 7-299 (715)
77 TIGR03200 dearomat_oah 6-oxocy 100.0 3E-47 6.5E-52 358.4 21.0 204 81-284 38-257 (360)
78 PRK11154 fadJ multifunctional 100.0 1.1E-46 2.4E-51 389.7 26.8 249 70-319 6-293 (708)
79 PRK06213 enoyl-CoA hydratase; 100.0 1.1E-46 2.4E-51 341.1 22.5 210 69-286 3-213 (229)
80 KOG1681 Enoyl-CoA isomerase [L 100.0 1E-47 2.2E-52 333.4 14.4 260 66-326 16-291 (292)
81 PLN02988 3-hydroxyisobutyryl-C 100.0 3.5E-46 7.5E-51 359.0 26.1 213 68-285 8-223 (381)
82 TIGR02440 FadJ fatty oxidation 100.0 2.8E-45 6.1E-50 378.4 25.5 241 78-319 8-288 (699)
83 PLN02267 enoyl-CoA hydratase/i 100.0 4.8E-45 1E-49 332.2 21.5 211 71-285 2-219 (239)
84 TIGR02437 FadB fatty oxidation 100.0 2E-43 4.4E-48 364.8 26.1 250 70-321 7-298 (714)
85 KOG0016 Enoyl-CoA hydratase/is 100.0 5.9E-43 1.3E-47 310.2 22.2 252 65-319 3-262 (266)
86 TIGR02441 fa_ox_alpha_mit fatt 100.0 5.5E-42 1.2E-46 355.0 26.6 250 67-319 11-320 (737)
87 KOG1682 Enoyl-CoA isomerase [L 100.0 3.1E-42 6.7E-47 294.6 19.8 252 71-326 34-286 (287)
88 TIGR03222 benzo_boxC benzoyl-C 100.0 1.7E-42 3.7E-47 345.5 20.9 207 65-273 7-232 (546)
89 PRK08184 benzoyl-CoA-dihydrodi 100.0 1.5E-41 3.2E-46 339.8 21.3 208 65-274 11-237 (550)
90 cd06558 crotonase-like Crotona 100.0 3E-41 6.6E-46 297.4 19.9 194 71-267 1-195 (195)
91 KOG1684 Enoyl-CoA hydratase [L 100.0 5E-40 1.1E-44 302.5 18.3 256 69-327 38-368 (401)
92 cd07014 S49_SppA Signal peptid 99.9 1.8E-21 3.9E-26 169.5 10.0 144 98-259 22-175 (177)
93 cd07020 Clp_protease_NfeD_1 No 99.8 1.3E-20 2.9E-25 165.4 13.2 152 81-259 1-172 (187)
94 cd07019 S49_SppA_1 Signal pept 99.7 1.7E-17 3.8E-22 148.4 7.4 145 95-257 18-207 (211)
95 cd07022 S49_Sppa_36K_type Sign 99.7 6.8E-16 1.5E-20 138.4 12.5 150 87-257 13-210 (214)
96 TIGR00705 SppA_67K signal pept 99.6 2.4E-16 5.2E-21 160.2 8.6 177 78-276 307-531 (584)
97 cd00394 Clp_protease_like Case 99.6 2.3E-15 4.9E-20 128.9 10.3 135 95-250 8-161 (161)
98 cd07023 S49_Sppa_N_C Signal pe 99.6 4E-15 8.7E-20 132.8 10.5 152 81-255 2-202 (208)
99 cd07016 S14_ClpP_1 Caseinolyti 99.6 3.5E-14 7.6E-19 121.5 11.8 129 98-250 15-160 (160)
100 TIGR00706 SppA_dom signal pept 99.6 3.4E-14 7.3E-19 126.8 12.0 153 81-261 2-203 (207)
101 cd07018 S49_SppA_67K_type Sign 99.5 4.1E-13 9E-18 121.0 11.5 146 94-259 25-219 (222)
102 cd07021 Clp_protease_NfeD_like 99.4 4.7E-12 1E-16 110.2 12.2 141 82-253 2-171 (178)
103 cd07015 Clp_protease_NfeD Nodu 99.0 5.1E-09 1.1E-13 90.4 13.7 145 82-253 2-165 (172)
104 PRK10949 protease 4; Provision 99.0 1E-08 2.2E-13 104.9 14.6 167 78-270 325-542 (618)
105 cd07013 S14_ClpP Caseinolytic 98.9 1.6E-08 3.4E-13 86.8 11.6 135 95-250 9-162 (162)
106 KOG1683 Hydroxyacyl-CoA dehydr 98.8 1.2E-09 2.5E-14 102.8 2.1 237 79-319 65-315 (380)
107 PRK11778 putative inner membra 98.7 1.9E-07 4.2E-12 88.3 12.9 157 78-260 89-293 (330)
108 PRK00277 clpP ATP-dependent Cl 98.7 2.3E-07 4.9E-12 82.4 11.7 140 93-253 38-196 (200)
109 cd07017 S14_ClpP_2 Caseinolyti 98.7 2.4E-07 5.1E-12 80.2 11.1 133 95-250 18-171 (171)
110 COG0616 SppA Periplasmic serin 98.6 2.5E-07 5.4E-12 87.8 10.9 135 100-257 82-266 (317)
111 PRK12553 ATP-dependent Clp pro 98.6 6.2E-07 1.3E-11 80.0 12.5 137 94-253 43-202 (207)
112 PRK14512 ATP-dependent Clp pro 98.5 1.8E-06 3.8E-11 76.5 12.5 138 95-253 32-188 (197)
113 PF00574 CLP_protease: Clp pro 98.5 3.8E-07 8.2E-12 79.6 7.6 142 84-253 19-181 (182)
114 PRK12319 acetyl-CoA carboxylas 98.5 2.5E-05 5.4E-10 71.7 18.9 140 92-254 76-215 (256)
115 CHL00028 clpP ATP-dependent Cl 98.4 7.4E-06 1.6E-10 72.6 14.3 139 94-254 38-197 (200)
116 CHL00198 accA acetyl-CoA carbo 98.4 2.6E-05 5.6E-10 73.4 17.8 139 92-253 132-270 (322)
117 TIGR00493 clpP ATP-dependent C 98.4 8.5E-06 1.8E-10 71.8 13.8 138 94-252 34-190 (191)
118 PLN03230 acetyl-coenzyme A car 98.4 2E-05 4.4E-10 76.1 16.9 138 93-253 200-337 (431)
119 PF01972 SDH_sah: Serine dehyd 98.4 1.4E-05 3.1E-10 73.0 14.9 95 93-211 70-164 (285)
120 TIGR00513 accA acetyl-CoA carb 98.3 5.1E-05 1.1E-09 71.4 17.4 139 92-253 129-267 (316)
121 PRK05724 acetyl-CoA carboxylas 98.3 5E-05 1.1E-09 71.6 17.2 139 92-253 129-267 (319)
122 TIGR00705 SppA_67K signal pept 98.3 1.7E-05 3.6E-10 81.3 14.8 86 98-201 76-161 (584)
123 PF01343 Peptidase_S49: Peptid 98.3 8.8E-07 1.9E-11 75.3 4.2 103 161-263 2-150 (154)
124 PRK12551 ATP-dependent Clp pro 98.2 2.5E-05 5.5E-10 69.0 13.3 140 94-254 33-191 (196)
125 PRK14514 ATP-dependent Clp pro 98.2 3.3E-05 7.2E-10 69.3 13.4 136 94-253 62-219 (221)
126 PLN03229 acetyl-coenzyme A car 98.2 0.00011 2.3E-09 75.4 18.5 139 92-253 220-358 (762)
127 PRK14513 ATP-dependent Clp pro 98.2 5.7E-05 1.2E-09 66.9 13.5 136 94-255 35-194 (201)
128 PRK10949 protease 4; Provision 98.0 7.1E-05 1.5E-09 77.0 13.2 86 98-201 95-180 (618)
129 TIGR03133 malonate_beta malona 98.0 0.0004 8.6E-09 64.3 16.1 151 81-255 61-219 (274)
130 TIGR00515 accD acetyl-CoA carb 97.9 0.00038 8.3E-09 64.9 14.6 162 78-269 118-281 (285)
131 TIGR03134 malonate_gamma malon 97.9 0.00049 1.1E-08 62.6 14.8 168 78-268 30-204 (238)
132 PRK05654 acetyl-CoA carboxylas 97.9 0.00049 1.1E-08 64.5 15.1 165 78-272 119-285 (292)
133 COG1030 NfeD Membrane-bound se 97.7 0.00061 1.3E-08 66.3 13.4 149 78-253 25-188 (436)
134 PRK07189 malonate decarboxylas 97.7 0.0011 2.3E-08 62.3 14.4 108 81-201 70-183 (301)
135 COG0740 ClpP Protease subunit 97.7 0.00078 1.7E-08 59.3 12.1 142 84-255 30-194 (200)
136 CHL00174 accD acetyl-CoA carbo 97.6 0.0038 8.2E-08 58.3 16.2 156 81-266 135-292 (296)
137 PRK12552 ATP-dependent Clp pro 97.6 0.0016 3.5E-08 58.4 13.3 142 95-253 49-214 (222)
138 TIGR01117 mmdA methylmalonyl-C 97.4 0.0047 1E-07 62.4 15.1 170 78-268 313-496 (512)
139 PF01039 Carboxyl_trans: Carbo 97.3 0.0041 8.9E-08 62.7 14.0 150 81-269 59-218 (493)
140 PF13766 ECH_C: 2-enoyl-CoA Hy 97.2 0.0018 3.9E-08 52.5 7.5 69 259-327 32-103 (118)
141 COG0777 AccD Acetyl-CoA carbox 97.1 0.013 2.8E-07 53.7 12.9 162 81-272 124-286 (294)
142 COG0825 AccA Acetyl-CoA carbox 96.8 0.005 1.1E-07 56.8 7.9 90 154-253 177-266 (317)
143 PLN02820 3-methylcrotonyl-CoA 96.7 0.05 1.1E-06 55.6 15.4 156 78-268 127-291 (569)
144 TIGR01117 mmdA methylmalonyl-C 96.7 0.03 6.6E-07 56.6 13.6 154 78-267 80-243 (512)
145 COG4799 Acetyl-CoA carboxylase 95.8 0.095 2.1E-06 52.7 11.4 149 82-269 94-250 (526)
146 PF01039 Carboxyl_trans: Carbo 95.4 0.17 3.7E-06 51.1 11.5 171 78-268 292-479 (493)
147 PLN02988 3-hydroxyisobutyryl-C 95.0 0.086 1.9E-06 51.4 7.9 87 241-327 232-339 (381)
148 PLN02820 3-methylcrotonyl-CoA 94.9 0.99 2.1E-05 46.3 15.4 155 93-267 380-554 (569)
149 PLN02157 3-hydroxyisobutyryl-C 94.7 0.13 2.7E-06 50.6 8.1 85 242-326 261-366 (401)
150 KOG0840 ATP-dependent Clp prot 91.9 2.2 4.8E-05 39.0 10.6 133 94-252 100-256 (275)
151 COG4799 Acetyl-CoA carboxylase 86.8 14 0.00031 37.4 13.1 167 81-268 326-509 (526)
152 PF02601 Exonuc_VII_L: Exonucl 81.8 3.2 7E-05 39.2 5.9 79 97-196 54-136 (319)
153 TIGR00237 xseA exodeoxyribonuc 80.8 3.6 7.8E-05 40.9 6.0 80 97-196 169-248 (432)
154 COG0074 SucD Succinyl-CoA synt 79.6 5 0.00011 37.3 6.0 53 103-177 188-240 (293)
155 KOG0540 3-Methylcrotonyl-CoA c 76.8 31 0.00067 34.3 10.7 150 84-258 353-512 (536)
156 PF06833 MdcE: Malonate decarb 76.5 14 0.0003 33.5 7.8 153 92-268 40-202 (234)
157 PF13607 Succ_CoA_lig: Succiny 76.0 6.5 0.00014 32.6 5.3 52 102-176 41-92 (138)
158 COG1570 XseA Exonuclease VII, 72.6 7.9 0.00017 38.4 5.7 77 99-196 177-254 (440)
159 PRK00286 xseA exodeoxyribonucl 70.5 9.5 0.00021 37.8 5.9 78 97-196 175-253 (438)
160 PLN02522 ATP citrate (pro-S)-l 67.6 13 0.00029 38.5 6.3 53 103-178 210-263 (608)
161 PTZ00187 succinyl-CoA syntheta 64.1 16 0.00034 34.8 5.7 54 102-177 211-264 (317)
162 PLN00125 Succinyl-CoA ligase [ 59.2 18 0.00038 34.2 5.1 54 102-177 192-245 (300)
163 smart00250 PLEC Plectin repeat 50.9 12 0.00026 23.5 1.8 18 232-249 18-35 (38)
164 COG0793 Prc Periplasmic protea 49.8 18 0.00038 35.7 3.6 97 81-184 205-306 (406)
165 PF00549 Ligase_CoA: CoA-ligas 47.5 33 0.00071 29.0 4.4 69 85-178 48-121 (153)
166 TIGR02717 AcCoA-syn-alpha acet 46.4 16 0.00035 36.4 2.7 53 102-177 190-242 (447)
167 PF03464 eRF1_2: eRF1 domain 2 44.9 38 0.00083 27.6 4.4 45 81-125 25-83 (133)
168 PRK06091 membrane protein FdrA 43.3 55 0.0012 33.6 5.9 52 103-177 240-291 (555)
169 TIGR01019 sucCoAalpha succinyl 42.2 54 0.0012 30.7 5.4 24 102-125 185-208 (286)
170 PRK05678 succinyl-CoA syntheta 40.6 60 0.0013 30.5 5.5 24 102-125 187-210 (291)
171 PF00681 Plectin: Plectin repe 38.0 11 0.00024 24.7 0.1 18 232-249 18-35 (45)
172 COG3660 Predicted nucleoside-d 29.4 3.5E+02 0.0075 25.4 8.2 114 82-197 130-255 (329)
173 PLN00049 carboxyl-terminal pro 29.2 38 0.00083 33.1 2.3 100 79-185 194-299 (389)
174 PLN02287 3-ketoacyl-CoA thiola 27.9 56 0.0012 32.7 3.2 42 5-47 1-42 (452)
175 TIGR02886 spore_II_AA anti-sig 26.8 1.7E+02 0.0037 22.2 5.2 46 73-125 3-48 (106)
176 PF01740 STAS: STAS domain; I 26.6 1.7E+02 0.0036 22.6 5.2 47 72-125 3-57 (117)
177 TIGR00377 ant_ant_sig anti-ant 26.5 1.9E+02 0.0041 21.8 5.5 48 71-125 5-52 (108)
178 KOG3446 NADH:ubiquinone oxidor 25.9 27 0.00058 26.5 0.4 29 303-331 22-51 (97)
179 KOG1255 Succinyl-CoA synthetas 24.4 1.5E+02 0.0033 27.2 4.9 57 102-177 218-274 (329)
180 KOG4230 C1-tetrahydrofolate sy 24.1 1.5E+02 0.0033 30.8 5.3 61 105-182 354-425 (935)
181 smart00870 Asparaginase Aspara 23.4 2.3E+02 0.005 26.9 6.4 32 93-124 55-87 (323)
182 PLN02312 acyl-CoA oxidase 23.2 84 0.0018 33.2 3.6 22 1-22 1-24 (680)
183 cd06567 Peptidase_S41 C-termin 23.1 53 0.0011 29.0 1.8 98 81-185 61-164 (224)
184 PF00195 Chal_sti_synt_N: Chal 23.0 84 0.0018 28.4 3.1 76 103-200 108-186 (226)
185 cd04241 AAK_FomA-like AAK_FomA 22.5 1.6E+02 0.0035 26.5 5.0 36 88-126 13-48 (252)
186 PRK11186 carboxy-terminal prot 21.4 88 0.0019 33.0 3.3 101 79-186 353-458 (667)
187 PF12268 DUF3612: Protein of u 21.2 39 0.00084 28.4 0.5 23 114-137 78-100 (178)
188 PRK01122 potassium-transportin 20.7 2.9E+02 0.0063 29.3 6.9 96 80-195 436-551 (679)
189 cd07560 Peptidase_S41_CPP C-te 20.6 55 0.0012 29.0 1.4 91 81-185 50-151 (211)
190 PF09425 CCT_2: Divergent CCT 20.5 36 0.00078 20.0 0.1 16 310-325 5-20 (27)
No 1
>PLN02921 naphthoate synthase
Probab=100.00 E-value=8e-70 Score=514.26 Aligned_cols=327 Identities=78% Similarity=1.211 Sum_probs=285.6
Q ss_pred hHHHHHHHHHhhhcccCCCcCCCCCCccccccCCCCCccccccCCCCCccchhhhcccCCCCCcccEEEEEeeCCCEEEE
Q 020093 5 IDSARRRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKI 84 (331)
Q Consensus 5 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~~I 84 (331)
|+++.||+++++|||+|.+.+++.+++-..+...+..+|+++|+.++.++..|...+..+..+|++|.++++.+++|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~Va~I 80 (327)
T PLN02921 1 MDAARRRLARVANHLVPSANPASMAAARSSSATAPPDSYRRVHGDVSSEPVVWRKVPDGSGKEFTDIIYEKAVGEGIAKI 80 (327)
T ss_pred CchhhhHHHHHhcccCcccccccccccccccccCCCCchhhhccccCCCCccccccccCCccCCceEEEEEecCCCEEEE
Confidence 78999999999999998876666666544445588899999999999999999987776777899999987223899999
Q ss_pred EEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcC
Q 020093 85 TINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRL 164 (331)
Q Consensus 85 tLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 164 (331)
|||||+++|+||.+|+.+|.++|+.++.|++|++|||+|.|+++||+|+|++++.................+++..|.++
T Consensus 81 tLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 160 (327)
T PLN02921 81 TINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRL 160 (327)
T ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999669999999997643211111111111234567789999
Q ss_pred CCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCCHHHHHhc
Q 020093 165 PKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKM 244 (331)
Q Consensus 165 ~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~a~eA~~~ 244 (331)
||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++++|++++|.++|++|+++|+.++|+||+++
T Consensus 161 ~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~A~ellltG~~~~A~eA~~~ 240 (327)
T PLN02921 161 PKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTASEALKM 240 (327)
T ss_pred CCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCchhHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCCC
Q 020093 245 GLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFYGTEEGSEGKTAFVERRRPDF 324 (331)
Q Consensus 245 GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~s~d~~egi~aflekr~p~f 324 (331)
||||+|||.+++++++.++|++|++.+|.+++.+|++++...+........+...+..++.++|++||+++|+|||+|+|
T Consensus 241 GLV~~vv~~~~l~~~a~~~a~~la~~~p~al~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~s~d~~egi~Af~ekr~p~f 320 (327)
T PLN02921 241 GLVNTVVPLDELEGETVKWCREILRNSPTAIRVLKSALNAADDGHAGLQELGGNATLLFYGSEEGNEGRTAYLEGRAPDF 320 (327)
T ss_pred CCceEEeCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence 99999999999999999999999999999999999999986554333333344566778899999999999999999999
Q ss_pred CCCCCCC
Q 020093 325 LKFPRRP 331 (331)
Q Consensus 325 ~~~~~~~ 331 (331)
+++|+.|
T Consensus 321 ~~~~~~~ 327 (327)
T PLN02921 321 SKFPRLP 327 (327)
T ss_pred CCCCCCC
Confidence 9999887
No 2
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=100.00 E-value=1.8e-62 Score=422.36 Aligned_cols=266 Identities=68% Similarity=1.116 Sum_probs=250.8
Q ss_pred CCCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeC--CCCceeccccccchhc-C
Q 020093 65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK--GTEAFCSGGDQALRTR-D 141 (331)
Q Consensus 65 ~~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~--g~~~FcaG~Dl~~~~~-~ 141 (331)
..+|++|+|++. .++|+.||+|||+++|++.+.++.||.++|..+..|++|.+|||||+ |+++||+|+|.+.... .
T Consensus 14 ~~~y~dI~Y~~~-~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~ 92 (282)
T COG0447 14 FEGYEDITYEKS-VDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSG 92 (282)
T ss_pred cCCcceeEEeec-cCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCC
Confidence 457999999993 38999999999999999999999999999999999999999999975 8899999999987655 3
Q ss_pred CCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhh
Q 020093 142 GYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221 (331)
Q Consensus 142 ~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~v 221 (331)
++...+...+++..++.+.|+.+||||||.|+|+|+|||..|.+.||+.||+++|+|++...++|.+.++.|+.+|.|+|
T Consensus 93 gY~~d~~~~rLnvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~V 172 (282)
T COG0447 93 GYVDDDGIPRLNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIV 172 (282)
T ss_pred CccCCccCcccchhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHh
Confidence 44445555677888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCchhHHHHHHHHHH
Q 020093 222 GPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATL 301 (331)
Q Consensus 222 G~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~ 301 (331)
|.++|+|+++.++.++|+||++|||||.|||.++|++++.+||++|..+||.++++.|.++|...+++..++++..+++.
T Consensus 173 GqKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kSP~AlR~LK~Afnad~DGlaG~q~~ag~at~ 252 (282)
T COG0447 173 GQKKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAREMLAKSPTALRMLKAAFNADCDGLAGLQELAGNATL 252 (282)
T ss_pred hhhhhHHhhhhhhhccHHHHHhcCceeeeccHHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCchhhHHHHhcccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCChhHHHHHHHHhcCCCCCCCCCCCCC
Q 020093 302 IFYGTEEGSEGKTAFVERRRPDFLKFPRRP 331 (331)
Q Consensus 302 ~~~~s~d~~egi~aflekr~p~f~~~~~~~ 331 (331)
.++.+++.+||..||+|||+|+|.++|+.|
T Consensus 253 L~YmTdEa~EGr~AF~eKR~Pdf~~fp~~p 282 (282)
T COG0447 253 LYYMTDEAQEGRDAFLEKRKPDFSKFPRNP 282 (282)
T ss_pred EEEechhhhhhHHHHhhccCCChHhcCCCC
Confidence 999999999999999999999999999876
No 3
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=2e-61 Score=431.63 Aligned_cols=251 Identities=39% Similarity=0.561 Sum_probs=225.6
Q ss_pred EEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhh
Q 020093 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG 150 (331)
Q Consensus 71 v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~ 150 (331)
.+... +++|+.||||||+++|+|+..|+.||.++|..++.|+++.++||||.| ++||+|.||+++......+....
T Consensus 39 ~~~~~--d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~g-ksFcsG~Dl~e~~~~~~~~~~~~- 114 (290)
T KOG1680|consen 39 ELVGE--DNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSG-KSFCSGADLKEMKKDEFQDVSDG- 114 (290)
T ss_pred EEeec--CCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCC-CccccccCHHHHhhccccccccc-
Confidence 44445 899999999999999999999999999999999999999999999999 79999999999865433221111
Q ss_pred hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHH
Q 020093 151 RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMW 230 (331)
Q Consensus 151 ~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ 230 (331)
.+.+.+..+.+.+||+||+|||+|+|||+||+++||+|||+++|+|++++.++|++|.+||+.+|+|+||.++|++++
T Consensus 115 --~~~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~ 192 (290)
T KOG1680|consen 115 --IFLRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMI 192 (290)
T ss_pred --cccchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHH
Confidence 122334455589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHcccc-CchhHHHHHHHHHHHHhCChhH
Q 020093 231 FLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDD-GHAGLQTLGGDATLIFYGTEEG 309 (331)
Q Consensus 231 ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~~~~~~~~~~s~d~ 309 (331)
+||++++|+||+++||||+|||.+++..+|.+|+++|++.||.++++.|+++|...+ .......++...+...+.++|.
T Consensus 193 ltg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~Ia~~~~~~v~~~K~svn~~~e~~l~e~l~~e~~~~~s~~~~~d~ 272 (290)
T KOG1680|consen 193 LTGRRLGAQEAKKIGLVNKVVPSGDALGEAVKLAEQIAKNSPLVVRADKESVNAAYETTLFEGLELERDLFGSTFATEDR 272 (290)
T ss_pred HhcCcccHHHHHhCCceeEeecchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccHHHHHHhhhhhhhhhhhhHHH
Confidence 999999999999999999999999999999999999999999999999999999665 3345567788888888999999
Q ss_pred HHHHHHHhcCCCCCCCCC
Q 020093 310 SEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 310 ~egi~aflekr~p~f~~~ 327 (331)
+|||.+|.|||+|+|.++
T Consensus 273 ~Eg~~~f~~kr~~~~~k~ 290 (290)
T KOG1680|consen 273 LEGMTAFAEKRKPKFSKK 290 (290)
T ss_pred HHHHHHhcccCCcccccC
Confidence 999999999999999863
No 4
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=2e-60 Score=441.51 Aligned_cols=265 Identities=69% Similarity=1.130 Sum_probs=233.4
Q ss_pred CCCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCc
Q 020093 65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA 144 (331)
Q Consensus 65 ~~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~ 144 (331)
..+|++|.++. +++|++||||||+++|+||.+|+.+|.++|+.++.|++||+|||+|.|+++||+|+||+++......
T Consensus 9 ~~~~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~ 86 (273)
T PRK07396 9 CKEYEDILYKS--ADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYV 86 (273)
T ss_pred CCCCcceEEEe--cCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhccccc
Confidence 45678899998 9999999999999999999999999999999999999999999999995699999999986421111
Q ss_pred chhhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHH
Q 020093 145 DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224 (331)
Q Consensus 145 ~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 224 (331)
............++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|..
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~ 166 (273)
T PRK07396 87 DDDGVPRLNVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQK 166 (273)
T ss_pred chhhhhhhHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHH
Confidence 11111112234567789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCchhHHHHHHHHHHHHh
Q 020093 225 KAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFY 304 (331)
Q Consensus 225 ~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~ 304 (331)
+|++|+++|+.++|+||+++||||+|||+++|++++.++|++|+..+|.+++.+|+.++..........+.+......++
T Consensus 167 ~a~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~e~~~~~~~~ 246 (273)
T PRK07396 167 KAREIWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNADCDGQAGLQELAGNATMLFY 246 (273)
T ss_pred HHHHHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999998765433223334555666778
Q ss_pred CChhHHHHHHHHhcCCCCCCCCCCCCC
Q 020093 305 GTEEGSEGKTAFVERRRPDFLKFPRRP 331 (331)
Q Consensus 305 ~s~d~~egi~aflekr~p~f~~~~~~~ 331 (331)
.++|++||+.+|++||+|+|++.|+.|
T Consensus 247 ~~~d~~egi~af~~kr~p~~~~~~~~~ 273 (273)
T PRK07396 247 MTEEAQEGRNAFNEKRQPDFSKFPRFP 273 (273)
T ss_pred cChhHHHHHHHHhCCCCCCCCCCCCCC
Confidence 899999999999999999999999877
No 5
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=3.6e-59 Score=430.11 Aligned_cols=258 Identities=69% Similarity=1.119 Sum_probs=224.5
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
++|.+++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++..........
T Consensus 2 ~~i~~~~~-~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 80 (259)
T TIGR01929 2 TDIRYEKS-TDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSG 80 (259)
T ss_pred ceEEEEEc-CCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhh
Confidence 45777752 58899999999999999999999999999999999999999999999966999999998764211111111
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHH
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~ 228 (331)
........++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+|++
T Consensus 81 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~ 160 (259)
T TIGR01929 81 VHRLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKARE 160 (259)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHH
Confidence 11122346777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCchhHHHHHHHHHHHHhCChh
Q 020093 229 MWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFYGTEE 308 (331)
Q Consensus 229 l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~s~d 308 (331)
|+++|++++|+||+++||||+|||++++.+++.++|++|+..||.+++.+|++++............+...+..++.++|
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~e~~~~~~~~~~~d 240 (259)
T TIGR01929 161 IWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWCREILQKSPMAIRMLKAALNADCDGQAGLQELAGNATMLFYMTEE 240 (259)
T ss_pred HHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999987654333333334456667889999
Q ss_pred HHHHHHHHhcCCCCCCCCC
Q 020093 309 GSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 309 ~~egi~aflekr~p~f~~~ 327 (331)
++||+++|++||+|+|+++
T Consensus 241 ~~egi~af~~kr~p~~~~~ 259 (259)
T TIGR01929 241 GQEGRNAFLEKRQPDFSKF 259 (259)
T ss_pred HHHHHHHHhccCCCCCCCC
Confidence 9999999999999999864
No 6
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=4.4e-59 Score=428.84 Aligned_cols=256 Identities=50% Similarity=0.860 Sum_probs=224.4
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchh
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (331)
|++|.+++ +++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||+|.|+++||+|+|++++..... ...
T Consensus 1 ~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~-~~~ 77 (256)
T TIGR03210 1 YEDILYEK--RNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYD-GRG 77 (256)
T ss_pred CCceEEEe--eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcccc-chh
Confidence 45688998 899999999999999999999999999999999999999999999999679999999998742111 111
Q ss_pred hhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHH
Q 020093 148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR 227 (331)
Q Consensus 148 ~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~ 227 (331)
.. ...+..++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|..+|+
T Consensus 78 ~~-~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~ 156 (256)
T TIGR03210 78 TI-GLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAR 156 (256)
T ss_pred HH-HHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHH
Confidence 11 11245678889999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred HHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCchhHHHHHHHHHHHHhCCh
Q 020093 228 EMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFYGTE 307 (331)
Q Consensus 228 ~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~s~ 307 (331)
+|+++|++++|+||+++||||+|+|++++.+++.+++++|++.||.+++.+|++++...+........+...+..++.++
T Consensus 157 ~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (256)
T TIGR03210 157 EIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEKSPTAIAIAKRSFNMDTAHQRGIAGMGMYALKLYYDTA 236 (256)
T ss_pred HHHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHccCh
Confidence 99999999999999999999999999999999999999999999999999999998764322111122334556678899
Q ss_pred hHHHHHHHHhcCCCCCCCCC
Q 020093 308 EGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 308 d~~egi~aflekr~p~f~~~ 327 (331)
|++||+++|++||+|+|+++
T Consensus 237 d~~e~~~af~~kr~p~~~~~ 256 (256)
T TIGR03210 237 ESREGVKAFQEKRKPEFRKY 256 (256)
T ss_pred hHHHHHHHHhccCCCCCCCC
Confidence 99999999999999999874
No 7
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.9e-58 Score=423.06 Aligned_cols=255 Identities=24% Similarity=0.393 Sum_probs=227.3
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchh
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (331)
+..|.+++ +++|++||||||++ |+||.+|+.+|.+++++++.|+++++|||+|+|+++||+|+||+++.........
T Consensus 2 ~~~v~~~~--~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~ 78 (258)
T PRK09076 2 MIELDLEI--DGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAR 78 (258)
T ss_pred ceEEEEEE--ECCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHH
Confidence 34688888 89999999999986 9999999999999999999999999999999997799999999987532111111
Q ss_pred hhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHH
Q 020093 148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR 227 (331)
Q Consensus 148 ~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~ 227 (331)
.. ...+..++.+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|+
T Consensus 79 ~~-~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~ 157 (258)
T PRK09076 79 EM-ARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAK 157 (258)
T ss_pred HH-HHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHH
Confidence 11 11245677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCC
Q 020093 228 EMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGT 306 (331)
Q Consensus 228 ~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s 306 (331)
+|+++|+.++|+||+++||||+|+|++++.+++.+++++|+..+|.+++.+|++++..... .....+.+...+..++.+
T Consensus 158 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~ 237 (258)
T PRK09076 158 RMILCGERVDAATALRIGLVEEVVEKGEAREAALALAQKVANQSPSAVAACKTLIQAARNGPRAAALALERELFVDLFDT 237 (258)
T ss_pred HHHHcCCcCCHHHHHHCCCCceecCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999876543 334456667778888999
Q ss_pred hhHHHHHHHHhcCCCCCCCC
Q 020093 307 EEGSEGKTAFVERRRPDFLK 326 (331)
Q Consensus 307 ~d~~egi~aflekr~p~f~~ 326 (331)
+|++||+++|++||+|+|++
T Consensus 238 ~~~~eg~~af~~kr~p~~~~ 257 (258)
T PRK09076 238 EDQREGVNAFLEKRAPQWKN 257 (258)
T ss_pred chHHHHHHHHhcCCCCCCCC
Confidence 99999999999999999975
No 8
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.1e-58 Score=422.08 Aligned_cols=254 Identities=35% Similarity=0.501 Sum_probs=227.6
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchh
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (331)
++.+.+++ +++|++||||||+++|+||.+|+.+|.+++++++.|+++|+|||+|.| ++||+|+||+++..... .+
T Consensus 3 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~--~~ 77 (257)
T PRK05862 3 YETILVET--RGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSE-KAFAAGADIKEMADLSF--MD 77 (257)
T ss_pred CceEEEEe--eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCC-CceECCcChHhHhccch--hH
Confidence 45688888 899999999999999999999999999999999999999999999999 69999999998753211 11
Q ss_pred hhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHH
Q 020093 148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR 227 (331)
Q Consensus 148 ~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~ 227 (331)
.. ...+..++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+|+
T Consensus 78 ~~-~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 156 (257)
T PRK05862 78 VY-KGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAM 156 (257)
T ss_pred HH-HHHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHH
Confidence 11 11234567789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCC
Q 020093 228 EMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGT 306 (331)
Q Consensus 228 ~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s 306 (331)
+|+++|+.++|+||+++||||+|+|++++++++.+++++|++.+|.+++.+|++++..... .....+.|...+..++.+
T Consensus 157 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s 236 (257)
T PRK05862 157 DLCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTIASFSLPAVMMAKEAVNRAYETTLAEGLLFERRLFHSLFAT 236 (257)
T ss_pred HHHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999986543 334455666677788999
Q ss_pred hhHHHHHHHHhcCCCCCCCCC
Q 020093 307 EEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 307 ~d~~egi~aflekr~p~f~~~ 327 (331)
+|++||+++|++||+|.|+++
T Consensus 237 ~~~~e~i~af~~kr~p~~~~~ 257 (257)
T PRK05862 237 EDQKEGMAAFVEKRKPVFKHR 257 (257)
T ss_pred hhHHHHHHHHhccCCCCCCCC
Confidence 999999999999999999863
No 9
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.7e-58 Score=426.30 Aligned_cols=258 Identities=28% Similarity=0.357 Sum_probs=227.5
Q ss_pred CCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCC--
Q 020093 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-- 143 (331)
Q Consensus 66 ~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~-- 143 (331)
+.+++|.+++ +++|++||||||+++|+||.+|+.+|.++|++++.|++|++|||+|.| ++||+|+||+++.....
T Consensus 3 ~~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~ 79 (272)
T PRK06142 3 TTYESFTVEL--ADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSG-KHFSYGIDLPAMAGVFGQL 79 (272)
T ss_pred CCcceEEEEe--cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CceecccCHHHHhhhcccc
Confidence 3457799998 999999999999999999999999999999999999999999999999 69999999998743110
Q ss_pred ------cchhhhh--hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHH
Q 020093 144 ------ADYENFG--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSS 215 (331)
Q Consensus 144 ------~~~~~~~--~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~ 215 (331)
....... ...+.+++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~ 159 (272)
T PRK06142 80 GKDGLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQ 159 (272)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHH
Confidence 0001111 11234677889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEecCC-CcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHH
Q 020093 216 IMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPL-EKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQ 293 (331)
Q Consensus 216 ~L~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~ 293 (331)
+|++++|..+|++|+++|++++|+||+++||||+|||+ +++.+.+.+++++|+..||.+++.+|+.++...+. .....
T Consensus 160 ~l~~~~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~l~~~~ 239 (272)
T PRK06142 160 RLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAKSPLAVRGTKEVLDYMRDHRVADGL 239 (272)
T ss_pred HHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHH
Confidence 99999999999999999999999999999999999996 88999999999999999999999999999976543 33444
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHhcCCCCCCCC
Q 020093 294 TLGGDATLIFYGTEEGSEGKTAFVERRRPDFLK 326 (331)
Q Consensus 294 ~~~~~~~~~~~~s~d~~egi~aflekr~p~f~~ 326 (331)
+.+......++.++|++||+.+|++||+|+|++
T Consensus 240 ~~~~~~~~~~~~~~d~~egv~af~~kr~p~~~~ 272 (272)
T PRK06142 240 RYVATWNAAMLPSKDLTEAIAAHMEKRPPEFTG 272 (272)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHhcCCCCCCCC
Confidence 556666777889999999999999999999975
No 10
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.2e-58 Score=423.35 Aligned_cols=253 Identities=31% Similarity=0.448 Sum_probs=225.3
Q ss_pred cEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCc-chhh
Q 020093 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA-DYEN 148 (331)
Q Consensus 70 ~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~-~~~~ 148 (331)
.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||||.|+++||+|+|++++...... ....
T Consensus 4 ~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~ 81 (260)
T PRK05980 4 TVLIEI--RDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVA 81 (260)
T ss_pred eEEEEE--ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhh
Confidence 588888 8999999999999999999999999999999999999999999999996699999999986432110 1111
Q ss_pred h--hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHH
Q 020093 149 F--GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (331)
Q Consensus 149 ~--~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a 226 (331)
. .......++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+|
T Consensus 82 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 161 (260)
T PRK05980 82 LRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRA 161 (260)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHH
Confidence 1 11123457778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhC
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYG 305 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~ 305 (331)
++|+++|++++|+||+++||||+|||++++.+++.+++++|++.+|.+++.+|++++...+. .......|...+..++.
T Consensus 162 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~ 241 (260)
T PRK05980 162 LELLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRIIRHSPVAVAAILTAVTRGLNLSIAEGLLIESEQFARMAG 241 (260)
T ss_pred HHHHHcCCccCHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999876543 33445666677788899
Q ss_pred ChhHHHHHHHHhcCCCCCC
Q 020093 306 TEEGSEGKTAFVERRRPDF 324 (331)
Q Consensus 306 s~d~~egi~aflekr~p~f 324 (331)
++|++||+++|++||+|+|
T Consensus 242 ~~~~~e~~~af~~kr~p~~ 260 (260)
T PRK05980 242 SADLREGLAAWIERRRPAY 260 (260)
T ss_pred ChhHHHHHHHHhccCCCCC
Confidence 9999999999999999998
No 11
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=5.7e-58 Score=420.27 Aligned_cols=249 Identities=29% Similarity=0.478 Sum_probs=222.1
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHH
Q 020093 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL 157 (331)
Q Consensus 78 ~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l 157 (331)
+++|++||||||+++|+||.+|+.+|.+++++++.|+++|+|||||.|+++||+|+|++++..........+ ...+..+
T Consensus 2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~-~~~~~~~ 80 (251)
T PLN02600 2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKF-VNSLRST 80 (251)
T ss_pred CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHH-HHHHHHH
Confidence 578999999999999999999999999999999999999999999986579999999998753211111111 1224567
Q ss_pred HHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCC
Q 020093 158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYT 237 (331)
Q Consensus 158 ~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~ 237 (331)
+..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++|+++|+.++
T Consensus 81 ~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~ 160 (251)
T PLN02600 81 FSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIG 160 (251)
T ss_pred HHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCccC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCChhHHHHHHHH
Q 020093 238 AEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTEEGSEGKTAF 316 (331)
Q Consensus 238 a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~af 316 (331)
++||+++||||++||++++.+++.+++++|++.||.+++.+|++++..... .......+...+..++.++|++||+++|
T Consensus 161 a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af 240 (251)
T PLN02600 161 AREAASMGLVNYCVPAGEAYEKALELAQEINQKGPLAIKMAKKAINEGSEVDMASGLEIEEECYEQVLKTKDRLEGLAAF 240 (251)
T ss_pred HHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999976543 3344556667778889999999999999
Q ss_pred hcCCCCCCCCC
Q 020093 317 VERRRPDFLKF 327 (331)
Q Consensus 317 lekr~p~f~~~ 327 (331)
+|||+|+|+++
T Consensus 241 ~ekr~p~~~~~ 251 (251)
T PLN02600 241 AEKRKPVYTGK 251 (251)
T ss_pred hcCCCCCCCCC
Confidence 99999999763
No 12
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.2e-58 Score=422.05 Aligned_cols=257 Identities=26% Similarity=0.410 Sum_probs=224.9
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
.++.+.+++ +++|++||||||+++|+||.+|+++|.+++++++.|++|++|||||.| ++||+|+|++++........
T Consensus 3 ~~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~ 79 (263)
T PRK07799 3 GGPHALVEQ--RGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAG-GAFCAGMDLKAATKKPPGDS 79 (263)
T ss_pred CCceEEEEE--ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CccccccCHHHHhhccccch
Confidence 356789998 899999999999999999999999999999999999999999999999 69999999998753211100
Q ss_pred -h-h-hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCH
Q 020093 147 -E-N-FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP 223 (331)
Q Consensus 147 -~-~-~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~ 223 (331)
. . .....+.. +..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|.
T Consensus 80 ~~~~~~~~~~~~~-~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~ 158 (263)
T PRK07799 80 FKDGSYDPSRIDA-LLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPY 158 (263)
T ss_pred hhhhhhhhhHHHH-HHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCH
Confidence 0 0 00011122 235789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHH
Q 020093 224 KKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLI 302 (331)
Q Consensus 224 ~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~ 302 (331)
++|++|+++|++++|+||+++||||+|||++++.+++.+++++|++.||.+++.+|+.++..... .....+.+......
T Consensus 159 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~ 238 (263)
T PRK07799 159 TVACDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELAELINANGPLAVQAILRTIRETEGMHENEAFKIDTKIGIP 238 (263)
T ss_pred HHHHHHHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHHHHHHHhcChHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999976543 23444556666777
Q ss_pred HhCChhHHHHHHHHhcCCCCCCCCC
Q 020093 303 FYGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 303 ~~~s~d~~egi~aflekr~p~f~~~ 327 (331)
++.++|++||+++|++||+|+|+++
T Consensus 239 ~~~~~~~~egi~af~~~r~p~~~~~ 263 (263)
T PRK07799 239 VFLSEDAKEGPRAFAEKRAPNFQGR 263 (263)
T ss_pred HhcCccHHHHHHHHHccCCCCCCCC
Confidence 8899999999999999999999863
No 13
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=9.7e-58 Score=420.92 Aligned_cols=258 Identities=36% Similarity=0.519 Sum_probs=230.4
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
+|+.+.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|+++||+|+|++++........
T Consensus 2 ~~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~ 79 (260)
T PRK05809 2 ELKNVILEK--EGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEG 79 (260)
T ss_pred CcceEEEEE--eCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHH
Confidence 456789998 899999999999999999999999999999999999999999999999669999999998753211111
Q ss_pred hhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHH
Q 020093 147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (331)
Q Consensus 147 ~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a 226 (331)
... ......++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|
T Consensus 80 ~~~-~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 158 (260)
T PRK05809 80 RKF-GLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKA 158 (260)
T ss_pred HHH-HHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHH
Confidence 111 1123467788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhC
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYG 305 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~ 305 (331)
++|+++|+.++|+||+++||||+|+|++++.+.+.+++++|+..||.+++.+|+.++...+. .....+.|...+..++.
T Consensus 159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~ 238 (260)
T PRK05809 159 KELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAANAPIAVKLCKDAINRGMQVDIDTAVAIEAEDFGECFS 238 (260)
T ss_pred HHHHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999976543 33445667777888899
Q ss_pred ChhHHHHHHHHhcCCCCCCCCC
Q 020093 306 TEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 306 s~d~~egi~aflekr~p~f~~~ 327 (331)
++|++||+++|++||+|+|+++
T Consensus 239 ~~~~~egi~af~~~r~p~~~~~ 260 (260)
T PRK05809 239 TEDQTEGMTAFVEKREKNFKNK 260 (260)
T ss_pred CHHHHHHHHHHhcCCCCCCCCC
Confidence 9999999999999999999864
No 14
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6e-58 Score=421.14 Aligned_cols=253 Identities=26% Similarity=0.337 Sum_probs=220.9
Q ss_pred EEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhh
Q 020093 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG 150 (331)
Q Consensus 71 v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~ 150 (331)
|.+++ +++|++||||||+++|+||.+|+.+|.+++++++.|+++|+|||+|.| ++||+|+|++++............
T Consensus 1 ~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~ 77 (255)
T PRK06563 1 VSRER--RGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHG-EHFTAGLDLADVAPKLAAGGFPFP 77 (255)
T ss_pred CeEEE--ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCC-CCCcCCcCHHHHhhccccchhhhh
Confidence 45677 899999999999999999999999999999999999999999999999 699999999987432111111111
Q ss_pred hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHH
Q 020093 151 RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMW 230 (331)
Q Consensus 151 ~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ 230 (331)
......+...+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.++|++|+
T Consensus 78 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ 157 (255)
T PRK06563 78 EGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYL 157 (255)
T ss_pred hhhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHH
Confidence 11112233358899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCChhH
Q 020093 231 FLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTEEG 309 (331)
Q Consensus 231 ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~ 309 (331)
++|+.++|+||+++||||+|+|++++.+++.+++++|++.+|.+++.+|+.++..... .....+.+...+..++.++|+
T Consensus 158 ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~ 237 (255)
T PRK06563 158 LTGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERIARAAPLGVQATLASARAAVREGEAAAAAQLPPELRPLFTSEDA 237 (255)
T ss_pred HcCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchH
Confidence 9999999999999999999999999999999999999999999999999999876432 334445556667778899999
Q ss_pred HHHHHHHhcCCCCCCCC
Q 020093 310 SEGKTAFVERRRPDFLK 326 (331)
Q Consensus 310 ~egi~aflekr~p~f~~ 326 (331)
+||+++|++||+|.|++
T Consensus 238 ~eg~~af~~kr~p~~~~ 254 (255)
T PRK06563 238 KEGVQAFLERRPARFKG 254 (255)
T ss_pred HHHHHHHhcCCCCCCCC
Confidence 99999999999999976
No 15
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-57 Score=420.18 Aligned_cols=257 Identities=31% Similarity=0.453 Sum_probs=228.1
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
++|.+++. +++|++||||||+++|+||.+|+.+|.+++++++.|+++++|||+|.|+++||+|+|++++........ .
T Consensus 3 ~~v~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~-~ 80 (260)
T PRK07657 3 QNISVDYV-TPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQV-R 80 (260)
T ss_pred ceEEEEEc-cCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhH-H
Confidence 46788752 689999999999999999999999999999999999999999999999669999999998743211111 1
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHH
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~ 228 (331)
.....+..++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++
T Consensus 81 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~ 160 (260)
T PRK07657 81 HAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKE 160 (260)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHHHHH
Confidence 11123456788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCCh
Q 020093 229 MWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTE 307 (331)
Q Consensus 229 l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~ 307 (331)
|+++|++++|+||+++||||+++|++++++.+.+++++|+..+|.+++.+|+.++..... .......+...+..++.++
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~ 240 (260)
T PRK07657 161 LIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIASNGPIAVRQAKEAISNGIQVDLHTGLQIEKQAYEGTIPTK 240 (260)
T ss_pred HHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCH
Confidence 999999999999999999999999999999999999999999999999999999976543 3344456667778889999
Q ss_pred hHHHHHHHHhcCCCCCCCCC
Q 020093 308 EGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 308 d~~egi~aflekr~p~f~~~ 327 (331)
|++||+++|++||+|+|+++
T Consensus 241 ~~~e~~~af~~~r~~~~~~~ 260 (260)
T PRK07657 241 DRLEGLQAFKEKRKPMYKGE 260 (260)
T ss_pred hHHHHHHHHhcCCCCCCCCC
Confidence 99999999999999999864
No 16
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-57 Score=422.31 Aligned_cols=257 Identities=30% Similarity=0.471 Sum_probs=227.6
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchh-
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE- 147 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~- 147 (331)
+.|.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.|+++||+|+|++++.........
T Consensus 11 ~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 88 (269)
T PRK06127 11 GKLLAEK--TGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAV 88 (269)
T ss_pred CceEEEE--ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHH
Confidence 4588888 8999999999999999999999999999999999999999999999986799999999987432111111
Q ss_pred hhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHH
Q 020093 148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR 227 (331)
Q Consensus 148 ~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~ 227 (331)
.........++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|+
T Consensus 89 ~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 168 (269)
T PRK06127 89 AAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAK 168 (269)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHHH
Confidence 11111234577889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCC
Q 020093 228 EMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGT 306 (331)
Q Consensus 228 ~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s 306 (331)
+|+++|++++|+||+++||||+|||++++++++.++|++++..+|.+++.+|+.++..... .....+.+...+..++.+
T Consensus 169 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~ 248 (269)
T PRK06127 169 DLFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATIAGNAPLTLRAAKRAIAELLKDEPERDMAACQALVAACFDS 248 (269)
T ss_pred HHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999886543 333445566677778899
Q ss_pred hhHHHHHHHHhcCCCCCCCCC
Q 020093 307 EEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 307 ~d~~egi~aflekr~p~f~~~ 327 (331)
+|.+||+++|+|||+|+|+++
T Consensus 249 ~d~~e~~~af~ekr~p~~~~~ 269 (269)
T PRK06127 249 EDYREGRAAFMEKRKPVFKGR 269 (269)
T ss_pred hHHHHHHHHHhcCCCCCCCCC
Confidence 999999999999999999863
No 17
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.5e-57 Score=418.43 Aligned_cols=252 Identities=26% Similarity=0.382 Sum_probs=222.7
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
+.|.+++ +++|++||||||+++|+||.+|+.+|.++++.++ +++|+|||||.| ++||+|+|++++..........
T Consensus 2 ~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g-~~F~aG~Dl~~~~~~~~~~~~~ 76 (255)
T PRK08150 2 SLVSYEL--DGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEG-DHFCAGLDLSELRERDAGEGMH 76 (255)
T ss_pred ceEEEEe--eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCC-CceecCcCHHHHhhccchhHHH
Confidence 3578888 8999999999999999999999999999999997 789999999999 5999999999875321111111
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHH
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~ 228 (331)
....+..++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++
T Consensus 77 -~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~ 155 (255)
T PRK08150 77 -HSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTD 155 (255)
T ss_pred -HHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHH
Confidence 1123456778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCCh
Q 020093 229 MWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTE 307 (331)
Q Consensus 229 l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~ 307 (331)
|+++|+.++|+||++|||||+|||++++.+++.+++++|+..+|.+++.+|++++..... .....+.+......++.++
T Consensus 156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~ 235 (255)
T PRK08150 156 MMLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQNAPLTNFAVLNALPRIADMSADDGLFVESLMAAVAQSAP 235 (255)
T ss_pred HHHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCH
Confidence 999999999999999999999999999999999999999999999999999999876543 2333445555666778899
Q ss_pred hHHHHHHHHhcCCCCCCCC
Q 020093 308 EGSEGKTAFVERRRPDFLK 326 (331)
Q Consensus 308 d~~egi~aflekr~p~f~~ 326 (331)
|++||+++|++||+|+|+.
T Consensus 236 d~~eg~~af~~kr~p~~~~ 254 (255)
T PRK08150 236 EAKERLRAFLEKKAAKVKP 254 (255)
T ss_pred HHHHHHHHHhccCCCCCCC
Confidence 9999999999999999964
No 18
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=1.5e-57 Score=418.43 Aligned_cols=253 Identities=29% Similarity=0.469 Sum_probs=226.7
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
..|.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||+|.| ++||+|+|++++..... ...
T Consensus 2 ~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~--~~~ 76 (255)
T PRK09674 2 SELLVSR--QQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNA-RFFAAGADLNEMAEKDL--AAT 76 (255)
T ss_pred ceEEEEe--ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCC-CceecccChHhHhccch--hhh
Confidence 3577888 899999999999999999999999999999999999999999999999 69999999998653211 111
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHH
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~ 228 (331)
. ......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.++++
T Consensus 77 ~-~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~ 155 (255)
T PRK09674 77 L-NDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQ 155 (255)
T ss_pred H-HHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHH
Confidence 1 112345778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCCh
Q 020093 229 MWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTE 307 (331)
Q Consensus 229 l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~ 307 (331)
|+++|+.++|+||+++||||+|||++++.+.+.+++++|+..||.+++.+|+.++...+. .....+.|...+..++.++
T Consensus 156 l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~ 235 (255)
T PRK09674 156 MVLTGESITAQQAQQAGLVSEVFPPELTLERALQLASKIARHSPLALRAAKQALRQSQEVDLQAGLAQERQLFTLLAATE 235 (255)
T ss_pred HHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCH
Confidence 999999999999999999999999999999999999999999999999999999876543 3344566667777889999
Q ss_pred hHHHHHHHHhcCCCCCCCCC
Q 020093 308 EGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 308 d~~egi~aflekr~p~f~~~ 327 (331)
|++||+++|++||+|.|+++
T Consensus 236 ~~~e~i~af~~kr~p~~~~~ 255 (255)
T PRK09674 236 DRHEGISAFLEKRTPDFKGR 255 (255)
T ss_pred HHHHHHHHHhccCCCCCCCC
Confidence 99999999999999999763
No 19
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-57 Score=419.74 Aligned_cols=256 Identities=30% Similarity=0.432 Sum_probs=226.1
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchh
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (331)
|+.|.++. +++|++||||||+++|+||.+|+.+|.+++++++ |+++++|||+|.| ++||+|+|++++.........
T Consensus 3 ~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~ 78 (262)
T PRK08140 3 YETILLAI--EAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAG-RGFCAGQDLADRDVTPGGAMP 78 (262)
T ss_pred CceEEEEe--ECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCC-CCcccCcChHHHhccccccch
Confidence 56788998 8999999999999999999999999999999999 9999999999999 699999999986432110001
Q ss_pred h---hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHH
Q 020093 148 N---FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224 (331)
Q Consensus 148 ~---~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 224 (331)
. .....+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~ 158 (262)
T PRK08140 79 DLGESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMA 158 (262)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHH
Confidence 1 0111123567789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHH
Q 020093 225 KAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIF 303 (331)
Q Consensus 225 ~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~ 303 (331)
+|++|+++|++++|+||+++||||+|||++++.+++.+++++|++.||.+++.+|+.++..... .....+.+...+..+
T Consensus 159 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~ 238 (262)
T PRK08140 159 RALGLALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLATQPTRGLALIKQAMNASATNTLDAQLDLERDLQREA 238 (262)
T ss_pred HHHHHHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999976543 334445566677778
Q ss_pred hCChhHHHHHHHHhcCCCCCCCCC
Q 020093 304 YGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 304 ~~s~d~~egi~aflekr~p~f~~~ 327 (331)
+.++|++||+.+|++||+|.|+++
T Consensus 239 ~~~~~~~e~~~af~~kr~p~~~~~ 262 (262)
T PRK08140 239 GRSADYAEGVSAFLEKRAPRFTGR 262 (262)
T ss_pred hcChhHHHHHHHHhcCCCCCCCCC
Confidence 899999999999999999999763
No 20
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-57 Score=420.47 Aligned_cols=254 Identities=30% Similarity=0.411 Sum_probs=224.1
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchh
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (331)
.+.|.+++ +++|++||||||+++|+||.+|+++|.+++++++.|+++++|||+|.|+++||+|+|++++.........
T Consensus 7 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~ 84 (262)
T PRK06144 7 TDELLLEV--RGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDA 84 (262)
T ss_pred CCceEEEe--eCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHH
Confidence 35688998 8999999999999999999999999999999999999999999999986699999999986432111110
Q ss_pred hhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCC-ccCCCCchHHHHHHHhhCHHHH
Q 020093 148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPK-VGSFDAGYGSSIMSRLVGPKKA 226 (331)
Q Consensus 148 ~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~-~Gl~p~~g~~~~L~r~vG~~~a 226 (331)
......+..++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||++ +|++|++|++++|++++|..+|
T Consensus 85 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a 164 (262)
T PRK06144 85 VAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARV 164 (262)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHH
Confidence 111123456778899999999999999999999999999999999999999999997 9999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCchhHHHHHHHHHHHHhCC
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFYGT 306 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~s 306 (331)
++++++|+.++|+||+++||||+|+|++++.+++.+++++|+..||.+++.+|+.++...+... ..+.+.+..++.+
T Consensus 165 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a~~~~K~~l~~~~~~~l---~~~~~~~~~~~~~ 241 (262)
T PRK06144 165 KDMLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELLAAHAPLTLRATKEALRRLRREGL---PDGDDLIRMCYMS 241 (262)
T ss_pred HHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcCH---HHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999987654321 2233456677889
Q ss_pred hhHHHHHHHHhcCCCCCCCC
Q 020093 307 EEGSEGKTAFVERRRPDFLK 326 (331)
Q Consensus 307 ~d~~egi~aflekr~p~f~~ 326 (331)
+|++||+++|++||+|+|++
T Consensus 242 ~~~~e~~~af~~kr~p~~~~ 261 (262)
T PRK06144 242 EDFREGVEAFLEKRPPKWKG 261 (262)
T ss_pred hHHHHHHHHHhcCCCCCCCC
Confidence 99999999999999999976
No 21
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-57 Score=419.20 Aligned_cols=255 Identities=32% Similarity=0.406 Sum_probs=222.6
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
.|+.|.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|+|+++||+|+||+++.......
T Consensus 2 ~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~- 78 (259)
T PRK06494 2 ALPFSTVER--KGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRG- 78 (259)
T ss_pred CCceeEEEe--ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcch-
Confidence 356788998 89999999999999999999999999999999999999999999999867999999999864321111
Q ss_pred hhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHH
Q 020093 147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (331)
Q Consensus 147 ~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a 226 (331)
.. ...+..+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+|
T Consensus 79 ~~--~~~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a 155 (259)
T PRK06494 79 WP--ESGFGGL-TSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRA 155 (259)
T ss_pred hh--hHHHHHH-HHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHHH
Confidence 00 1112233 34568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHH--HHHHHHH
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLG--GDATLIF 303 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~--~~~~~~~ 303 (331)
++|+++|+.++|+||+++||||+++|++++.+++.+++++|+..||.+++.+|+.++...+. .......+ ...+..+
T Consensus 156 ~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~ 235 (259)
T PRK06494 156 MGMILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILACSPLSIRASKQAVYRGLEVSLEEAITAQRDYPAVEAR 235 (259)
T ss_pred HHHHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999976543 23333444 3345677
Q ss_pred hCChhHHHHHHHHhcCCCCCCCCC
Q 020093 304 YGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 304 ~~s~d~~egi~aflekr~p~f~~~ 327 (331)
+.++|++||+++|++||+|+|+++
T Consensus 236 ~~~~d~~eg~~af~~kr~p~~~~~ 259 (259)
T PRK06494 236 RASQDYIEGPKAFAEKRPPRWKGR 259 (259)
T ss_pred hcCccHHHHHHHHHccCCCCCCCC
Confidence 899999999999999999999763
No 22
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=1.4e-57 Score=418.85 Aligned_cols=252 Identities=29% Similarity=0.402 Sum_probs=223.2
Q ss_pred EEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh--
Q 020093 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN-- 148 (331)
Q Consensus 71 v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~-- 148 (331)
|++++ +++|++||||||+++|+||.+|+.+|.+++++++.|+ +++|||||.| ++||+|+|++++..........
T Consensus 1 ~~~e~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~~ 76 (256)
T TIGR02280 1 ILSAL--EAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAG-RGFCAGQDLSERNPTPGGAPDLGR 76 (256)
T ss_pred CeEEE--ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCC-CCcccCcCHHHHhhccccchhHHH
Confidence 45777 8999999999999999999999999999999999998 9999999999 6999999999875321111110
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHH
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~ 228 (331)
.....+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++
T Consensus 77 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~ 156 (256)
T TIGR02280 77 TIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMG 156 (256)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHH
Confidence 00111235677899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCCh
Q 020093 229 MWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTE 307 (331)
Q Consensus 229 l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~ 307 (331)
|+++|++++|+||+++||||+|+|++++.+++.+++++|+..||.+++.+|+.++..... .......+...+..++.++
T Consensus 157 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~ 236 (256)
T TIGR02280 157 LAMLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQPTRGLALTKRAIQAAATNSLDTQLDLERDLQRELGRSA 236 (256)
T ss_pred HHHcCCCCCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCh
Confidence 999999999999999999999999999999999999999999999999999999876543 3344456667778889999
Q ss_pred hHHHHHHHHhcCCCCCCCC
Q 020093 308 EGSEGKTAFVERRRPDFLK 326 (331)
Q Consensus 308 d~~egi~aflekr~p~f~~ 326 (331)
|++||+.+|++||+|+|++
T Consensus 237 d~~eg~~af~~kr~p~~~~ 255 (256)
T TIGR02280 237 DYAEGVTAFLDKRNPQFTG 255 (256)
T ss_pred hHHHHHHHHHcCCCCCCCC
Confidence 9999999999999999986
No 23
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-57 Score=418.40 Aligned_cols=255 Identities=28% Similarity=0.370 Sum_probs=226.6
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
+++.+++ +++|++||||||++ |+||.+|+++|.+++++++.|++|++|||+|.| ++||+|+|++++..........
T Consensus 2 ~~i~~~~--~~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 77 (257)
T PRK07658 2 KFLSVRV--EDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEG-RFFSAGADIKEFTSVTEAEQAT 77 (257)
T ss_pred ceEEEEe--eCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceEeCcCHHHHhccCchhhHH
Confidence 3678888 89999999999986 999999999999999999999999999999999 6999999999874321111100
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHH
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~ 228 (331)
........++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++
T Consensus 78 ~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~ 157 (257)
T PRK07658 78 ELAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALE 157 (257)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHH
Confidence 01112356788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHcccc-CchhHHHHHHHHHHHHhCCh
Q 020093 229 MWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDD-GHAGLQTLGGDATLIFYGTE 307 (331)
Q Consensus 229 l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~~~~~~~~~~s~ 307 (331)
|+++|++++++||+++||||+|+|++++.+++.+++++|++.+|.+++.+|++++...+ ......+.|...+..++.++
T Consensus 158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~ 237 (257)
T PRK07658 158 MMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKSPATTRAVLELLQTTKSSSYYEGVKREAKIFGEVFTSE 237 (257)
T ss_pred HHHcCCCcCHHHHHHcCCcCeecChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCH
Confidence 99999999999999999999999999999999999999999999999999999987654 23444566777788889999
Q ss_pred hHHHHHHHHhcCCCCCCCCC
Q 020093 308 EGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 308 d~~egi~aflekr~p~f~~~ 327 (331)
|.+||+++|++||+|+|+++
T Consensus 238 ~~~egi~af~~kr~p~~~~~ 257 (257)
T PRK07658 238 DAKEGVQAFLEKRKPSFSGK 257 (257)
T ss_pred HHHHHHHHHHcCCCCCCCCC
Confidence 99999999999999999863
No 24
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.5e-57 Score=421.03 Aligned_cols=256 Identities=31% Similarity=0.419 Sum_probs=225.9
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCH-HHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCc---
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRP-HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA--- 144 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~-~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~--- 144 (331)
+.|.+++ +++|++||||||+++|+||. +|+++|.+++++++.|++|++|||+|.| ++||+|+||+++......
T Consensus 3 ~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~ 79 (266)
T PRK09245 3 DFLLVER--DGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAG-TAFSSGGNVKDMRARVGAFGG 79 (266)
T ss_pred CceEEEE--ECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccCcCHHHHhhccccccc
Confidence 3588988 89999999999999999995 9999999999999999999999999999 699999999987431110
Q ss_pred chhh---hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhh
Q 020093 145 DYEN---FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221 (331)
Q Consensus 145 ~~~~---~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~v 221 (331)
.... .....+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~v 159 (266)
T PRK09245 80 SPADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRII 159 (266)
T ss_pred cchhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHh
Confidence 0001 1111234677789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHH
Q 020093 222 GPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDAT 300 (331)
Q Consensus 222 G~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~ 300 (331)
|..+|++|+++|++++|+||+++||||+|+|++++++++.+++++|++.||.+++.+|+.++...+. .......+....
T Consensus 160 G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~ 239 (266)
T PRK09245 160 GMARAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERIAANPPHALRLTKRLLREGQHASLDTLLELSAAYQ 239 (266)
T ss_pred hHHHHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999976543 333445566667
Q ss_pred HHHhCChhHHHHHHHHhcCCCCCCCCC
Q 020093 301 LIFYGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 301 ~~~~~s~d~~egi~aflekr~p~f~~~ 327 (331)
..++.++|++||+++|++||+|.|+++
T Consensus 240 ~~~~~~~d~~eg~~af~~kr~p~~~~~ 266 (266)
T PRK09245 240 ALAHHTADHREAVDAFLEKRPPVFTGR 266 (266)
T ss_pred HHHhcCHhHHHHHHHHHcCCCCCCCCC
Confidence 778899999999999999999999763
No 25
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-57 Score=418.88 Aligned_cols=257 Identities=33% Similarity=0.492 Sum_probs=224.6
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcc-
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD- 145 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~- 145 (331)
+|+++.++. +++|++||||||+++|+||.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++.......
T Consensus 2 ~~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~ 78 (262)
T PRK05995 2 MYETLEIEQ--RGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAG-KAFCAGADLNWMKKMAGYSD 78 (262)
T ss_pred CCceEEEEe--eCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CccccCcCHHHHhhhcccCc
Confidence 356788998 899999999999999999999999999999999999999999999999 6999999999864311111
Q ss_pred hhhhh-hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHH
Q 020093 146 YENFG-RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224 (331)
Q Consensus 146 ~~~~~-~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 224 (331)
..... ...+.+++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++++ .+|++++|..
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~-~~l~~~vg~~ 157 (262)
T PRK05995 79 DENRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATIS-PYVIRAMGER 157 (262)
T ss_pred hhhhhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchH-HHHHHHhCHH
Confidence 11111 123456788899999999999999999999999999999999999999999999999998765 4589999999
Q ss_pred HHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhH-HHHHHHHHHH
Q 020093 225 KAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGL-QTLGGDATLI 302 (331)
Q Consensus 225 ~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~-~~~~~~~~~~ 302 (331)
+|++|+++|++|+|+||+++||||+|+|++++.+++.+++++|++.||.+++.+|+.++...+. .... .+.+...+..
T Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~ 237 (262)
T PRK05995 158 AARRYFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVANSPQAVRAGKRLVRDVAGRPIDAALIADTASRIAL 237 (262)
T ss_pred HHHHHHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999876432 2222 4455566677
Q ss_pred HhCChhHHHHHHHHhcCCCCCCCCC
Q 020093 303 FYGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 303 ~~~s~d~~egi~aflekr~p~f~~~ 327 (331)
++.++|++||+++|++||+|+|+++
T Consensus 238 ~~~~~d~~e~~~af~~kr~p~~~~~ 262 (262)
T PRK05995 238 IRATEEAREGVAAFLEKRKPAWRGR 262 (262)
T ss_pred HhcCHHHHHHHHHHhcCCCCCCCCC
Confidence 8899999999999999999999864
No 26
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=2.9e-57 Score=418.89 Aligned_cols=256 Identities=32% Similarity=0.429 Sum_probs=225.1
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchh
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (331)
...+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.| ++||+|+|++++.........
T Consensus 10 ~~~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~ 86 (266)
T PRK08139 10 APLLLRED--RDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAG-KAFCAGHDLKEMRAARGLAYF 86 (266)
T ss_pred CCceEEEe--eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCC-CcceeccCHHHHhcccchhHH
Confidence 35688888 899999999999999999999999999999999999999999999999 699999999986532111100
Q ss_pred hhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHH
Q 020093 148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR 227 (331)
Q Consensus 148 ~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~ 227 (331)
......+.+++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+++ +++|+|++|..+|+
T Consensus 87 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A~ 165 (266)
T PRK08139 87 RALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQAM 165 (266)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHHH
Confidence 00111235677889999999999999999999999999999999999999999999999998764 67899999999999
Q ss_pred HHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCC
Q 020093 228 EMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGT 306 (331)
Q Consensus 228 ~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s 306 (331)
+|+++|+.++|+||+++||||+|+|++++++.+.+++++|++.||.+++.+|+.++...+. .......+.+.+..++.+
T Consensus 166 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~ 245 (266)
T PRK08139 166 EMLLTGEFIDAATAREWGLVNRVVPADALDAAVARLAAVIAAKSPAAVRIGKEAFYRQAEMPLADAYAYAGDVMAENMMA 245 (266)
T ss_pred HHHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999986543 234445566677778899
Q ss_pred hhHHHHHHHHhcCCCCCCCCC
Q 020093 307 EEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 307 ~d~~egi~aflekr~p~f~~~ 327 (331)
+|++||+++|++||+|+|.++
T Consensus 246 ~d~~eg~~af~~kr~p~~~~~ 266 (266)
T PRK08139 246 EDAEEGIDAFLEKRPPEWRGR 266 (266)
T ss_pred chHHHHHHHHhcCCCCCCCCC
Confidence 999999999999999999764
No 27
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=2.5e-57 Score=421.36 Aligned_cols=254 Identities=25% Similarity=0.339 Sum_probs=222.1
Q ss_pred EEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCc----c-
Q 020093 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA----D- 145 (331)
Q Consensus 71 v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~----~- 145 (331)
+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++...... .
T Consensus 10 ~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g-~~FcaG~Dl~~~~~~~~~~~~~~~ 86 (275)
T PLN02664 10 IQKSP--NSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAG-DHFCSGIDLKTLNSISEQSSSGDR 86 (275)
T ss_pred EEecC--CCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CceeeCcChHHhhhcccccccccc
Confidence 44555 899999999999999999999999999999999999999999999999 699999999987432110 0
Q ss_pred -h--hhhh--hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHh
Q 020093 146 -Y--ENFG--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL 220 (331)
Q Consensus 146 -~--~~~~--~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~ 220 (331)
. .... ...+.+++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ 166 (275)
T PLN02664 87 GRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSI 166 (275)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHH
Confidence 0 0111 1123467778999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCHHHHHHHHHcCCCCCHHHHHhcCcccEecCC-CcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHH
Q 020093 221 VGPKKAREMWFLARFYTAEEAEKMGLVNTVVPL-EKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGD 298 (331)
Q Consensus 221 vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~ 298 (331)
+|.++|++|+++|+.++|+||+++||||+|||+ +++.+.+.++|++|+..+|.+++.+|+.++...+. .....+.+..
T Consensus 167 vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~ 246 (275)
T PLN02664 167 VGYGNAMELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKSPLAVTGTKAVLLRSRELSVEQGLDYVAT 246 (275)
T ss_pred hCHHHHHHHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999999999999999999999999999995 88999999999999999999999999999876543 3334455666
Q ss_pred HHHHHhCChhHHHHHHHHhcCCCCCCCCC
Q 020093 299 ATLIFYGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 299 ~~~~~~~s~d~~egi~aflekr~p~f~~~ 327 (331)
.+..++.++|++||+++|++||+|.|+++
T Consensus 247 ~~~~~~~~~d~~eg~~af~ekr~p~~~~~ 275 (275)
T PLN02664 247 WNSAMLVSDDLNEAVSAQIQKRKPVFAKL 275 (275)
T ss_pred HHHHhccChhHHHHHHHHhccCCCCCCCC
Confidence 66777889999999999999999999864
No 28
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=3.3e-57 Score=418.29 Aligned_cols=257 Identities=30% Similarity=0.501 Sum_probs=222.4
Q ss_pred CcccEEEEEeeC-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcc
Q 020093 67 EFTDIIYEKAVG-EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD 145 (331)
Q Consensus 67 ~~~~v~~~~~~~-~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~ 145 (331)
+|++|.+++ + ++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||+|.| ++||+|+|++++.......
T Consensus 3 ~~~~l~~~~--~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~~~~ 79 (265)
T PRK05674 3 DFQTIELIR--DPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRG-RHFSAGADLAWMQQSADLD 79 (265)
T ss_pred CcceEEEEE--cCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCcccCcCHHHHhhccccc
Confidence 478899988 5 78999999999999999999999999999999999999999999999 6999999999864321100
Q ss_pred h-hhh-hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCH
Q 020093 146 Y-ENF-GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP 223 (331)
Q Consensus 146 ~-~~~-~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~ 223 (331)
. ... ....+..++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+++++ +|++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~ 158 (265)
T PRK05674 80 YNTNLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGE 158 (265)
T ss_pred chhhhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCH
Confidence 0 011 11124567888999999999999999999999999999999999999999999999999987654 58999999
Q ss_pred HHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCc-hhHHH-HHHHHHH
Q 020093 224 KKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGH-AGLQT-LGGDATL 301 (331)
Q Consensus 224 ~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~-~~~~~-~~~~~~~ 301 (331)
.+|++|+++|+.|+|+||+++||||+|+|+++|.+++.+++++|+..||.+++.+|+.++...+.. ..... .+...+.
T Consensus 159 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~ 238 (265)
T PRK05674 159 RAARRYALTAERFDGRRARELGLLAESYPAAELEAQVEAWIANLLLNSPQALRASKDLLREVGDGELSPALRRYCENAIA 238 (265)
T ss_pred HHHHHHHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhccChhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999875432 22222 2334556
Q ss_pred HHhCChhHHHHHHHHhcCCCCCCCCC
Q 020093 302 IFYGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 302 ~~~~s~d~~egi~aflekr~p~f~~~ 327 (331)
.++.++|.+||+++|++||+|+|++.
T Consensus 239 ~~~~s~d~~e~~~af~~kr~p~~~~~ 264 (265)
T PRK05674 239 RIRVSAEGQEGLRAFLEKRTPAWQTD 264 (265)
T ss_pred HHhcCHHHHHHHHHHHccCCCCCCCC
Confidence 67889999999999999999999764
No 29
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.8e-57 Score=418.60 Aligned_cols=260 Identities=26% Similarity=0.347 Sum_probs=222.0
Q ss_pred CCCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCc
Q 020093 65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA 144 (331)
Q Consensus 65 ~~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~ 144 (331)
...|+.|.+++. +++|++||||||+++|+||.+|+.+|.++|++++.|++|++|||||.| ++||+|+||+++......
T Consensus 7 ~~~~~~i~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~ 84 (268)
T PRK07327 7 YADYPALRFDRP-PPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEG-KAFSAGGDLALVEEMADD 84 (268)
T ss_pred CCCCCeEEEEec-CCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCC-CCcccccCHHHHhhccCc
Confidence 345678989872 478999999999999999999999999999999999999999999999 699999999976432111
Q ss_pred chhhh-hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCH
Q 020093 145 DYENF-GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP 223 (331)
Q Consensus 145 ~~~~~-~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~ 223 (331)
..... .......++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~ 164 (268)
T PRK07327 85 FEVRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGM 164 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCH
Confidence 11011 11123467788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCchhHHHHHHHHHHHH
Q 020093 224 KKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIF 303 (331)
Q Consensus 224 ~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~ 303 (331)
.+|++|+++|++++|+||+++||||+++|++++++++.++|++|++.||.+++.+|+.++...+......+.........
T Consensus 165 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~ 244 (268)
T PRK07327 165 AKAKYYLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLAAGSQTAIRWTKYALNNWLRMAGPTFDTSLALEFMG 244 (268)
T ss_pred HHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999865322111111111112246
Q ss_pred hCChhHHHHHHHHhcCCCCCCCC
Q 020093 304 YGTEEGSEGKTAFVERRRPDFLK 326 (331)
Q Consensus 304 ~~s~d~~egi~aflekr~p~f~~ 326 (331)
+.++|++||+++|++||+|+|++
T Consensus 245 ~~~~d~~eg~~af~ekr~p~~~~ 267 (268)
T PRK07327 245 FSGPDVREGLASLREKRAPDFPG 267 (268)
T ss_pred ccChhHHHHHHHHHhcCCCCCCC
Confidence 78999999999999999999986
No 30
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.3e-57 Score=415.25 Aligned_cols=251 Identities=30% Similarity=0.417 Sum_probs=221.2
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
+.|.+++ +++|++||||||+++|+||.+|+.+|.+++++++.|++|++|||+|.| ++||+|+|++++..... . .
T Consensus 3 ~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~--~-~ 76 (254)
T PRK08252 3 DEVLVER--RGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAG-GTFCAGMDLKAFARGER--P-S 76 (254)
T ss_pred ceEEEEE--ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CceEcCcCHHHHhcccc--h-h
Confidence 4588888 899999999999999999999999999999999999999999999999 69999999998753211 1 1
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHH
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~ 228 (331)
.....+..+. ...+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++
T Consensus 77 ~~~~~~~~~~--~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~ 154 (254)
T PRK08252 77 IPGRGFGGLT--ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAME 154 (254)
T ss_pred hhHHHHHHHH--HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHHH
Confidence 1111111222 24799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCCh
Q 020093 229 MWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTE 307 (331)
Q Consensus 229 l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~ 307 (331)
|+++|++++|+||+++||||+|||++++.+++.+++++|+..||.+++.+|+.++...+. .....+.+...+..++.++
T Consensus 155 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~ 234 (254)
T PRK08252 155 LALTGDMLTAERAHELGLVNRLTEPGQALDAALELAERIAANGPLAVAASKRIVVESGDWSEDEMFARQRELIAPVFTSA 234 (254)
T ss_pred HHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999999999976543 3334455666677788999
Q ss_pred hHHHHHHHHhcCCCCCCCCC
Q 020093 308 EGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 308 d~~egi~aflekr~p~f~~~ 327 (331)
|++||+++|++||+|+|.++
T Consensus 235 ~~~eg~~af~~kr~p~~~~~ 254 (254)
T PRK08252 235 DAKEGATAFAEKRAPVWTGK 254 (254)
T ss_pred hHHHHHHHHhcCCCCCCCCC
Confidence 99999999999999999763
No 31
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.3e-57 Score=419.52 Aligned_cols=255 Identities=29% Similarity=0.390 Sum_probs=226.2
Q ss_pred cEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCC-Ccchhh
Q 020093 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDG-YADYEN 148 (331)
Q Consensus 70 ~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~-~~~~~~ 148 (331)
.+.+++ +++|++||||||+++|+|+.+|+.+|.++|++++.|+++++|||+|.| ++||+|+|++++.... ......
T Consensus 18 ~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g-~~FsaG~Dl~~~~~~~~~~~~~~ 94 (277)
T PRK08258 18 HFLWEV--DDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAG-GNFCSGGDVHEIIGPLTKMDMPE 94 (277)
T ss_pred ceEEEE--ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCC-CCcccccCHHHHhccccccChhH
Confidence 688998 899999999999999999999999999999999999999999999999 6999999999864211 001111
Q ss_pred hh--hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCC-CchHHHHHHHhhCHHH
Q 020093 149 FG--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFD-AGYGSSIMSRLVGPKK 225 (331)
Q Consensus 149 ~~--~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p-~~g~~~~L~r~vG~~~ 225 (331)
.. ...+.+++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++| ++|++++|++++|..+
T Consensus 95 ~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~ 174 (277)
T PRK08258 95 LLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGR 174 (277)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHH
Confidence 11 11234678889999999999999999999999999999999999999999999999985 6788999999999999
Q ss_pred HHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHh
Q 020093 226 AREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFY 304 (331)
Q Consensus 226 a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~ 304 (331)
|++|+++|++++|+||+++||||+|+|++++++++.+++++|+..||.+++.+|+.++...+. .....+.+...+..++
T Consensus 175 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~ 254 (277)
T PRK08258 175 ASELLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRLAAGPTFAHGMTKTMLHQEWDMGLEEAIEAEAQAQAICM 254 (277)
T ss_pred HHHHHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999986543 3444566677778889
Q ss_pred CChhHHHHHHHHhcCCCCCCCCC
Q 020093 305 GTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 305 ~s~d~~egi~aflekr~p~f~~~ 327 (331)
.++|++||+++|+|||+|+|+++
T Consensus 255 ~s~d~~eg~~af~ekr~p~~~~~ 277 (277)
T PRK08258 255 QTEDFRRAYEAFVAKRKPVFEGD 277 (277)
T ss_pred cCchHHHHHHHHhcCCCCCCCCC
Confidence 99999999999999999999763
No 32
>PRK08321 naphthoate synthase; Validated
Probab=100.00 E-value=9.5e-57 Score=422.24 Aligned_cols=273 Identities=54% Similarity=0.919 Sum_probs=232.2
Q ss_pred cchhhhcccCCCCCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCC------C
Q 020093 54 DVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT------E 127 (331)
Q Consensus 54 ~~~~~~~~~~~~~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~------~ 127 (331)
+..|..+. .-.|.+|.++++.+++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|+ +
T Consensus 11 ~~~~~~~~---~~~~~~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~ 87 (302)
T PRK08321 11 PDLWRPVP---GFDFTDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGW 87 (302)
T ss_pred cccccCcC---CCCceeEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCC
Confidence 45677332 23577888887546889999999999999999999999999999999999999999999983 5
Q ss_pred ceeccccccchhcCCC----cc--h--h--hhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEe-CCc
Q 020093 128 AFCSGGDQALRTRDGY----AD--Y--E--NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA-DNA 196 (331)
Q Consensus 128 ~FcaG~Dl~~~~~~~~----~~--~--~--~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~-~~a 196 (331)
+||+|+|++++..... .. . . ........++...+..+||||||+|||+|+|||++|+++||+|||+ +++
T Consensus 88 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a 167 (302)
T PRK08321 88 AFCSGGDQRIRGRDGYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHA 167 (302)
T ss_pred eeecCcChhhhccccccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCC
Confidence 9999999987532110 00 0 0 0001112346677889999999999999999999999999999999 699
Q ss_pred eeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHH
Q 020093 197 IFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIR 276 (331)
Q Consensus 197 ~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~ 276 (331)
+|++||+++|++|+++++++|+|++|..+|++|+++|+.++|+||+++||||++||++++.+++.+++++|++.+|.+++
T Consensus 168 ~f~~pe~~~Gl~p~~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~ 247 (302)
T PRK08321 168 RFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKSPTAMR 247 (302)
T ss_pred EEECCccccccCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccccCchhHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCCCCCCCC
Q 020093 277 VLKSALNAVDDGHAGLQTLGGDATLIFYGTEEGSEGKTAFVERRRPDFLKFPR 329 (331)
Q Consensus 277 ~~K~~l~~~~~~~~~~~~~~~~~~~~~~~s~d~~egi~aflekr~p~f~~~~~ 329 (331)
.+|++++............+...+..++.++|.+||+.+|++||+|.|.++|+
T Consensus 248 ~~K~~l~~~~~~~~~~~~~e~~~~~~~~~~~d~~egi~af~ekr~p~~~~~~~ 300 (302)
T PRK08321 248 MLKYAFNLTDDGLVGQQLFAGEATRLAYMTDEAQEGRDAFLEKRDPDWSDFPW 300 (302)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCCCCCC
Confidence 99999987654333333345566777889999999999999999999998864
No 33
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.5e-57 Score=416.74 Aligned_cols=257 Identities=27% Similarity=0.389 Sum_probs=227.2
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCC-CeeEEEEEeCCCCceeccccccchhcCCCcc
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDS-SVGVIILTGKGTEAFCSGGDQALRTRDGYAD 145 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~-~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~ 145 (331)
+|+.+.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|+ ++++|||+|.| ++||+|+|++++.......
T Consensus 2 ~~~~v~~~~--~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~ 78 (266)
T PRK05981 2 QFKKVTLDF--DGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAG-RGFCTGANLQGRGSGGRES 78 (266)
T ss_pred CcceEEEEe--ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-CCcccccCHHhhhcccccc
Confidence 467789998 8999999999999999999999999999999999876 59999999999 6999999999874321100
Q ss_pred ----h-hhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHh
Q 020093 146 ----Y-ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL 220 (331)
Q Consensus 146 ----~-~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~ 220 (331)
. .......+..++..|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~ 158 (266)
T PRK05981 79 DSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRL 158 (266)
T ss_pred cccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHH
Confidence 0 00111124567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHH
Q 020093 221 VGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDA 299 (331)
Q Consensus 221 vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~ 299 (331)
+|+.+|++|+++|++++|+||+++||||+++|++++.+++.+++++|+..||.+++.+|++++...+. .....+.+...
T Consensus 159 vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~ 238 (266)
T PRK05981 159 VGKARAMELSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHELANGPTVALGLIRKLYWDSPENDFEEQLNLEREA 238 (266)
T ss_pred hHHHHHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999876432 33444556666
Q ss_pred HHHHhCChhHHHHHHHHhcCCCCCCCC
Q 020093 300 TLIFYGTEEGSEGKTAFVERRRPDFLK 326 (331)
Q Consensus 300 ~~~~~~s~d~~egi~aflekr~p~f~~ 326 (331)
+..++.++|.+||+.+|+|||+|.|++
T Consensus 239 ~~~~~~s~d~~e~~~af~~kr~~~~~~ 265 (266)
T PRK05981 239 QRIAGKTEDFKEGVGAFLQKRPAQFKG 265 (266)
T ss_pred HHHHhcChhHHHHHHHHhcCCCCCCCC
Confidence 777889999999999999999999976
No 34
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.5e-57 Score=415.87 Aligned_cols=256 Identities=23% Similarity=0.340 Sum_probs=226.1
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
++++|.++. +++|++||||||+++|++|.+|+.+|.++++++ .|+++++|||+|.| ++||+|+|++++........
T Consensus 4 ~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g-~~F~aG~Dl~~~~~~~~~~~ 79 (260)
T PRK07659 4 KMESVVVKY--EGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNG-RGFSAGGDIKMMLSSNDESK 79 (260)
T ss_pred CCceEEEEe--eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCC-CCcccccCHHHHhhccCchh
Confidence 446799998 899999999999999999999999999999999 58899999999999 69999999998753211111
Q ss_pred hhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHH
Q 020093 147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (331)
Q Consensus 147 ~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a 226 (331)
.......+.+++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+|
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a 159 (260)
T PRK07659 80 FDGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKA 159 (260)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHH
Confidence 11111234567788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhC
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYG 305 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~ 305 (331)
++|+++|+.++|+||+++||||++| ++++.+++.+++++|++.||.+++.+|+.++...+. .....+.+...+..++.
T Consensus 160 ~~l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~ 238 (260)
T PRK07659 160 KQIIWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKISEWLQKPLKAMIETKQIYCELNRSQLEQVLQLEKRAQYAMRQ 238 (260)
T ss_pred HHHHHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999 789999999999999999999999999999876443 33445566667778889
Q ss_pred ChhHHHHHHHHhcCCCCCCCCC
Q 020093 306 TEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 306 s~d~~egi~aflekr~p~f~~~ 327 (331)
++|++||+++|++||+|+|+++
T Consensus 239 ~~~~~egi~af~~kr~p~~~~~ 260 (260)
T PRK07659 239 TADHKEGIRAFLEKRLPVFKGE 260 (260)
T ss_pred CHhHHHHHHHHhcCCCCCCCCC
Confidence 9999999999999999999763
No 35
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.3e-57 Score=415.09 Aligned_cols=255 Identities=31% Similarity=0.487 Sum_probs=222.8
Q ss_pred cccEEEEEeeC-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCC-cc
Q 020093 68 FTDIIYEKAVG-EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-AD 145 (331)
Q Consensus 68 ~~~v~~~~~~~-~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~-~~ 145 (331)
|+.+.+++ + ++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++..... ..
T Consensus 3 ~~~~~~~~--~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~ 79 (262)
T PRK07468 3 FETIRIAV--DARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAG-KSFCAGGDLGWMRAQMTADR 79 (262)
T ss_pred cceEEEEE--cCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CcccCCcCHHHHHhhcccch
Confidence 45688887 5 68999999999999999999999999999999999999999999999 69999999998642111 11
Q ss_pred hhhh-hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHH
Q 020093 146 YENF-GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224 (331)
Q Consensus 146 ~~~~-~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 224 (331)
.... ....+..++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++ +++|..
T Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~-~~vG~~ 158 (262)
T PRK07468 80 ATRIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVV-ARMGEA 158 (262)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHH-hhccHH
Confidence 1111 11224567788999999999999999999999999999999999999999999999999999888755 559999
Q ss_pred HHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCc-hhHHHHHHHHHHHH
Q 020093 225 KAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGH-AGLQTLGGDATLIF 303 (331)
Q Consensus 225 ~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~-~~~~~~~~~~~~~~ 303 (331)
+|++|+++|++++|+||+++||||+|+|.+++.+.+.+++++|++.+|.+++.+|++++...... ....+.|...+..+
T Consensus 159 ~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~ 238 (262)
T PRK07468 159 NARRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTPYLSCAPGAVAAAKALVRALGAPIDEAVIDATIEALADT 238 (262)
T ss_pred HHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998764332 34455666677788
Q ss_pred hCChhHHHHHHHHhcCCCCCCCC
Q 020093 304 YGTEEGSEGKTAFVERRRPDFLK 326 (331)
Q Consensus 304 ~~s~d~~egi~aflekr~p~f~~ 326 (331)
+.++|++||+++|++||+|+|++
T Consensus 239 ~~s~d~~e~~~af~~kr~~~~~~ 261 (262)
T PRK07468 239 WETEEAREGIAAFFDKRAPAWRG 261 (262)
T ss_pred hcCHHHHHHHHHHHcCCCCCCCC
Confidence 99999999999999999999975
No 36
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=8e-57 Score=414.87 Aligned_cols=256 Identities=30% Similarity=0.415 Sum_probs=225.6
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCC-CCceeccccccchhcCCCcc
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG-TEAFCSGGDQALRTRDGYAD 145 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g-~~~FcaG~Dl~~~~~~~~~~ 145 (331)
+|+.+.++. +++|++||||||+++|+||.+|+.+|.++++++++|+ +++|||+|.| +++||+|+|++++..... .
T Consensus 2 ~~~~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~-~ 77 (261)
T PRK11423 2 SMQYVNVVT--INKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGR-D 77 (261)
T ss_pred CccceEEEe--ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccc-c
Confidence 356789998 8999999999999999999999999999999999887 9999999974 479999999998643211 1
Q ss_pred hhhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHH
Q 020093 146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK 225 (331)
Q Consensus 146 ~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~ 225 (331)
.... ...+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+
T Consensus 78 ~~~~-~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~ 156 (261)
T PRK11423 78 PLSY-DDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHI 156 (261)
T ss_pred HHHH-HHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHH
Confidence 1111 123456788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHcccc-C-c-hhHHHHHHHHHHH
Q 020093 226 AREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDD-G-H-AGLQTLGGDATLI 302 (331)
Q Consensus 226 a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~-~-~~~~~~~~~~~~~ 302 (331)
|++|+++|++++|+||+++||||+|||++++++.+.+++++|++.+|.+++.+|+.++.... . . ....+.+......
T Consensus 157 a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (261)
T PRK11423 157 VKEMFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEQLRVLGEAHPMNPDEFERIQGLRRA 236 (261)
T ss_pred HHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999986542 1 1 2344555566678
Q ss_pred HhCChhHHHHHHHHhcCCCCCCCCC
Q 020093 303 FYGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 303 ~~~s~d~~egi~aflekr~p~f~~~ 327 (331)
++.++|++||+.+|++||+|+|+++
T Consensus 237 ~~~s~d~~eg~~af~~kr~p~~~~~ 261 (261)
T PRK11423 237 VYDSEDYQEGMNAFLEKRKPVFVGH 261 (261)
T ss_pred HhCChhHHHHHHHHhccCCCCCCCC
Confidence 8899999999999999999999763
No 37
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-56 Score=413.38 Aligned_cols=253 Identities=32% Similarity=0.474 Sum_probs=225.4
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
+.+.++.. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++..... ...
T Consensus 7 ~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~--~~~ 82 (261)
T PRK08138 7 DVVLLERP-ADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGE-KVFAAGADIKEFATAGA--IEM 82 (261)
T ss_pred CCEEEEEc-cCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCC-CCeeCCcCHHHHhccch--hHH
Confidence 45777763 688999999999999999999999999999999999999999999998 59999999998753211 111
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHH
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~ 228 (331)
.......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..++++
T Consensus 83 -~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~ 161 (261)
T PRK08138 83 -YLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMR 161 (261)
T ss_pred -HHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHH
Confidence 1122456778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCCh
Q 020093 229 MWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTE 307 (331)
Q Consensus 229 l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~ 307 (331)
|+++|+.++++||+++||||+|||++++.+++.+++++|++.+|.+++.+|+.++..... .......|.+.+..++.++
T Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~ 241 (261)
T PRK08138 162 MALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREIARMPPLALAQIKEVVLAGADAPLDAALALERKAFQLLFDSE 241 (261)
T ss_pred HHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCH
Confidence 999999999999999999999999999999999999999999999999999999876543 3344455666777888999
Q ss_pred hHHHHHHHHhcCCCCCCCC
Q 020093 308 EGSEGKTAFVERRRPDFLK 326 (331)
Q Consensus 308 d~~egi~aflekr~p~f~~ 326 (331)
|++|++++|++||+|+|++
T Consensus 242 ~~~~~i~af~~kr~~~~~~ 260 (261)
T PRK08138 242 DQKEGMDAFLEKRKPAYKG 260 (261)
T ss_pred HHHHHHHHHhcCCCCCCCC
Confidence 9999999999999999976
No 38
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-56 Score=421.16 Aligned_cols=257 Identities=32% Similarity=0.450 Sum_probs=224.4
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcC-CCc--
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRD-GYA-- 144 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~-~~~-- 144 (331)
|++|.+++ +++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||+|.| ++||+|+|++++... ...
T Consensus 3 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~ 79 (296)
T PRK08260 3 YETIRYDV--ADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAG-RAFCAGADLSAGGNTFDLDAP 79 (296)
T ss_pred cceEEEee--eCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CCeecCcChHHhhhccccccc
Confidence 56788998 899999999999999999999999999999999999999999999999 699999999986421 000
Q ss_pred ------------ch-hhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCc
Q 020093 145 ------------DY-ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAG 211 (331)
Q Consensus 145 ------------~~-~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~ 211 (331)
.. ..........++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~ 159 (296)
T PRK08260 80 RTPVEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEA 159 (296)
T ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCc
Confidence 00 00011113457778999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhcc-CHHHHHHHHHHHHcccc--C
Q 020093 212 YGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRN-SPTAIRVLKSALNAVDD--G 288 (331)
Q Consensus 212 g~~~~L~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~-~~~a~~~~K~~l~~~~~--~ 288 (331)
|++++|++++|..+|++|+++|++++|+||+++||||+|||++++.+++.+++++|+.. +|.+++.+|++++.... .
T Consensus 160 g~~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~i~~~~~~~a~~~~K~~l~~~~~~~~ 239 (296)
T PRK08260 160 ASSWFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREIADNTSPVSVALTRQMMWRMAGADH 239 (296)
T ss_pred chhhhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999995 99999999999997642 1
Q ss_pred chhHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCCCCCC
Q 020093 289 HAGLQTLGGDATLIFYGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 289 ~~~~~~~~~~~~~~~~~s~d~~egi~aflekr~p~f~~~ 327 (331)
.......+...+..++.++|++||+++|++||+|+|+++
T Consensus 240 ~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~f~~~ 278 (296)
T PRK08260 240 PMEAHRVDSRAIYSRGRSGDGKEGVSSFLEKRPAVFPGK 278 (296)
T ss_pred cHHHHHHHHHHHHHHccChhHHHHHHHHhcCCCCCCCCC
Confidence 222223455566777889999999999999999999875
No 39
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.2e-57 Score=417.02 Aligned_cols=258 Identities=33% Similarity=0.472 Sum_probs=226.5
Q ss_pred CcccEEEEEeeCC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcc
Q 020093 67 EFTDIIYEKAVGE-GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD 145 (331)
Q Consensus 67 ~~~~v~~~~~~~~-~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~ 145 (331)
.|+.|.+++ ++ +|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|.| ++||+|+|++++.......
T Consensus 3 ~~~~i~~~~--~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~ 79 (272)
T PRK06210 3 AYDAVLYEV--ADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAG-RGFCAGADMGELQTIDPSD 79 (272)
T ss_pred CcceEEEEE--CCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCC-CCcccccCHHHHhccCccc
Confidence 457799998 88 9999999999999999999999999999999999999999999999 6999999999864321110
Q ss_pred hh------hhhh---hhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHH
Q 020093 146 YE------NFGR---LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI 216 (331)
Q Consensus 146 ~~------~~~~---~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~ 216 (331)
.. .... ..+++++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~ 159 (272)
T PRK06210 80 GRRDTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWI 159 (272)
T ss_pred ccccccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhh
Confidence 00 0000 11245567899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhcc-CHHHHHHHHHHHHccccC-chhHHH
Q 020093 217 MSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRN-SPTAIRVLKSALNAVDDG-HAGLQT 294 (331)
Q Consensus 217 L~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~-~~~a~~~~K~~l~~~~~~-~~~~~~ 294 (331)
|++++|+.++++|+++|+.++|+||+++||||+++|++++.+++.+++++|+.. +|.++..+|+.++..... .....+
T Consensus 160 l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~p~a~~~~K~~l~~~~~~~l~~~~~ 239 (272)
T PRK06210 160 LPRLVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSPASMAVIKRQLYEDAFQTLAEATA 239 (272)
T ss_pred hHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999985 999999999999976443 233445
Q ss_pred HHHHHHHHHhCChhHHHHHHHHhcCCCCCCCCC
Q 020093 295 LGGDATLIFYGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 295 ~~~~~~~~~~~s~d~~egi~aflekr~p~f~~~ 327 (331)
.+...+..++.++|.+||+++|++||+|.|.++
T Consensus 240 ~e~~~~~~~~~~~~~~egi~af~~kr~p~~~~~ 272 (272)
T PRK06210 240 RANREMHESLQRPDFIEGVASFLEKRPPRFPGL 272 (272)
T ss_pred HHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Confidence 566667778899999999999999999999763
No 40
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=2.2e-56 Score=412.07 Aligned_cols=252 Identities=30% Similarity=0.408 Sum_probs=220.7
Q ss_pred cEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhh
Q 020093 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF 149 (331)
Q Consensus 70 ~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~ 149 (331)
.|.+++ +++|++||||||+ .|+||.+|+.+|.++++.++.|++|++|||+|.|+++||+|+|++++....... ...
T Consensus 4 ~i~~~~--~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~-~~~ 79 (261)
T PRK03580 4 SLHTTR--NGSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPD-ADF 79 (261)
T ss_pred eEEEEE--ECCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcch-hhh
Confidence 488888 8999999999996 599999999999999999999999999999999967999999999875321111 111
Q ss_pred hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHH
Q 020093 150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREM 229 (331)
Q Consensus 150 ~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l 229 (331)
......++..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|+.+|+++
T Consensus 80 -~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l 158 (261)
T PRK03580 80 -GPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEM 158 (261)
T ss_pred -hhhhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHHHHH
Confidence 1112345678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHH----HHHHHHh
Q 020093 230 WFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGG----DATLIFY 304 (331)
Q Consensus 230 ~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~----~~~~~~~ 304 (331)
+++|+.++|+||+++||||+|+|++++.+++.+++++|+..+|.+++.+|+.++..... .....+.+. ..+..++
T Consensus 159 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~ 238 (261)
T PRK03580 159 VMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLVNSAPLAIAALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVL 238 (261)
T ss_pred HHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999876543 222223332 2456678
Q ss_pred CChhHHHHHHHHhcCCCCCCCC
Q 020093 305 GTEEGSEGKTAFVERRRPDFLK 326 (331)
Q Consensus 305 ~s~d~~egi~aflekr~p~f~~ 326 (331)
.++|++||+++|+|||+|+|++
T Consensus 239 ~~~d~~e~~~af~ekr~~~~~~ 260 (261)
T PRK03580 239 HSEDALEGPRAFAEKRDPVWKG 260 (261)
T ss_pred cCccHHHHHHHHhcCCCCCCCC
Confidence 9999999999999999999976
No 41
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-56 Score=420.63 Aligned_cols=257 Identities=30% Similarity=0.418 Sum_probs=219.9
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccc-hhc---CC-
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQAL-RTR---DG- 142 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~-~~~---~~- 142 (331)
|++|.+++ +++|++||||||+++|+||.+|+.+|.++|++++.|++||+|||||+| ++||+|+||++ +.. ..
T Consensus 4 ~~~v~~~~--~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G-~~FcaG~Dl~~~~~~~~~~~~ 80 (298)
T PRK12478 4 FQTLLYTT--AGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAG-RAFSGGYDFGGGFQHWGEAMM 80 (298)
T ss_pred ceEEEEec--cCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccCcCccccccccchhcc
Confidence 56788988 999999999999999999999999999999999999999999999999 69999999986 211 00
Q ss_pred -Cc--c-hhhh-----hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCc-cCCCCch
Q 020093 143 -YA--D-YENF-----GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKV-GSFDAGY 212 (331)
Q Consensus 143 -~~--~-~~~~-----~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~-Gl~p~~g 212 (331)
.. . .... .......++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++ |++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~~-- 158 (298)
T PRK12478 81 TDGRWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLT-- 158 (298)
T ss_pred cccccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCch--
Confidence 00 0 0111 00011235667899999999999999999999999999999999999999999997 87752
Q ss_pred HHHHHHHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHcccc--Cch
Q 020093 213 GSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDD--GHA 290 (331)
Q Consensus 213 ~~~~L~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~--~~~ 290 (331)
+++ .+++|..+|++|+++|++|+|+||+++||||+|||+++|++++.++|++|+..||.+++.+|++++...+ ...
T Consensus 159 ~~~--~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~l~ 236 (298)
T PRK12478 159 GMW--LYRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELARIPLSQLQAQKLIVNQAYENMGLA 236 (298)
T ss_pred hHH--HHHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcchh
Confidence 333 3569999999999999999999999999999999999999999999999999999999999999998654 244
Q ss_pred hHHHHHHHHHHHHhCChhHH--------HHHHHHhcCCCCCCCCCCCCC
Q 020093 291 GLQTLGGDATLIFYGTEEGS--------EGKTAFVERRRPDFLKFPRRP 331 (331)
Q Consensus 291 ~~~~~~~~~~~~~~~s~d~~--------egi~aflekr~p~f~~~~~~~ 331 (331)
...+.+...+..++.++|++ ||++||+|||+|+|.++.++|
T Consensus 237 ~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~ekR~p~f~~~~~~~ 285 (298)
T PRK12478 237 STQTLGGILDGLMRNTPDALEFIRTAETQGVRAAVERRDGPFGDYSQAP 285 (298)
T ss_pred HHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcCCcccccCcCC
Confidence 55567777788889999997 599999999999999997765
No 42
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.5e-56 Score=410.44 Aligned_cols=250 Identities=28% Similarity=0.364 Sum_probs=219.7
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
.++.++.. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||.|+++||+|+|++++..........
T Consensus 6 ~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 84 (256)
T PRK06143 6 AHAGVTRD-DRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEA 84 (256)
T ss_pred ccceeeec-CCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHH
Confidence 45677752 68999999999999999999999999999999999999999999999966999999999875321111111
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHH
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~ 228 (331)
....+..++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|+ |+++++++|++++|..+|++
T Consensus 85 -~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~a~~ 162 (256)
T PRK06143 85 -FISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWARTRW 162 (256)
T ss_pred -HHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHHHHH
Confidence 1123456788899999999999999999999999999999999999999999999997 77888999999999999999
Q ss_pred HHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCCh
Q 020093 229 MWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTE 307 (331)
Q Consensus 229 l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~ 307 (331)
++++|+.++|+||+++||||+|||++++.+++.+++++|+..||.+++.+|+.++...+. .......+...+..++.++
T Consensus 163 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~ 242 (256)
T PRK06143 163 LLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAGCGPQALRQQKRLLREWEDMPLDVAIDDSVAEFGAAFLTG 242 (256)
T ss_pred HHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhcCh
Confidence 999999999999999999999999999999999999999999999999999999986543 3344455666677788999
Q ss_pred hHHHHHHHHhcCCC
Q 020093 308 EGSEGKTAFVERRR 321 (331)
Q Consensus 308 d~~egi~aflekr~ 321 (331)
|++||+++|+|||+
T Consensus 243 d~~e~~~af~ekr~ 256 (256)
T PRK06143 243 EPQRHMAAFLNRKR 256 (256)
T ss_pred HHHHHHHHHHhhcC
Confidence 99999999999985
No 43
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3e-56 Score=414.29 Aligned_cols=260 Identities=29% Similarity=0.346 Sum_probs=220.5
Q ss_pred CCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCc-
Q 020093 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA- 144 (331)
Q Consensus 66 ~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~- 144 (331)
.+++.|.++.. +++|++||||||+++|+||.+|+.+|.+++++++.|++||+|||+|.| ++||+|+|++++......
T Consensus 6 ~~~~~v~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g-~~FcaG~Dl~~~~~~~~~~ 83 (276)
T PRK05864 6 STMSLVLVDHP-RPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAG-RGFSSGADHKSAGVVPHVE 83 (276)
T ss_pred CCCCceEEeee-cCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCeecCcchhhhhcccccc
Confidence 34566778752 688999999999999999999999999999999999999999999999 699999999986421100
Q ss_pred ---chhh-h-hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCC-CchHHHHHH
Q 020093 145 ---DYEN-F-GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFD-AGYGSSIMS 218 (331)
Q Consensus 145 ---~~~~-~-~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p-~~g~~~~L~ 218 (331)
.... . ....+..++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++| ++|++++|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~ 163 (276)
T PRK05864 84 GLTRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLP 163 (276)
T ss_pred cccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehH
Confidence 0000 0 011234567788999999999999999999999999999999999999999999999997 678889999
Q ss_pred HhhCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC--chhHHHHH
Q 020093 219 RLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG--HAGLQTLG 296 (331)
Q Consensus 219 r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~--~~~~~~~~ 296 (331)
+++|..+|++|+++|++++|+||+++||||+|+|++++++++.++|++|+..||.+++.+|+.++...+. .......+
T Consensus 164 ~~vG~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e 243 (276)
T PRK05864 164 RAIGSSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMAGFSRPGIELTKRTLWSGLDAASLEAHMQAE 243 (276)
T ss_pred hhhCHHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcccCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999875442 22222333
Q ss_pred HHH-HHHHhCChhHHHHHHHHhcCCCCCCCCC
Q 020093 297 GDA-TLIFYGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 297 ~~~-~~~~~~s~d~~egi~aflekr~p~f~~~ 327 (331)
... ....+.++|++||+++|++||+|+|++.
T Consensus 244 ~~~~~~~~~~~~d~~e~~~af~~kr~p~~~~~ 275 (276)
T PRK05864 244 GLGQLFVRLLTANFEEAVAARAEKRPPVFTDD 275 (276)
T ss_pred HHHHHHHhccChhHHHHHHHHhccCCCCCCCC
Confidence 321 1224679999999999999999999864
No 44
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.5e-56 Score=409.82 Aligned_cols=254 Identities=28% Similarity=0.411 Sum_probs=226.5
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
.++.+++ +++|++||||||+++|+||.+|+.+|.+++++++.|++||+|||+|.| ++||+|+|++++..........
T Consensus 3 ~~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~F~~G~Dl~~~~~~~~~~~~~ 79 (260)
T PRK07511 3 AELLSRR--EGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAG-GFFCAGGNLNRLLENRAKPPSV 79 (260)
T ss_pred CeeEEEe--ECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCC-CCcccCcCHHHHhhcccccchh
Confidence 3478888 899999999999999999999999999999999999999999999999 6999999999875321101111
Q ss_pred h--hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHH
Q 020093 149 F--GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (331)
Q Consensus 149 ~--~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a 226 (331)
. ....+.+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.+++
T Consensus 80 ~~~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a 159 (260)
T PRK07511 80 QAASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLA 159 (260)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHH
Confidence 1 11234577888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhC
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYG 305 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~ 305 (331)
++|+++|++++++||+++||||+||+++++.+++.+++++|++.+|.+++.+|+.++...+. .....+.|...+..++.
T Consensus 160 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~ 239 (260)
T PRK07511 160 TELLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLAAGSPNALARIKSLIADAPEATLAAQLEAERDHFVASLH 239 (260)
T ss_pred HHHHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999876543 33445666677788889
Q ss_pred ChhHHHHHHHHhcCCCCCCC
Q 020093 306 TEEGSEGKTAFVERRRPDFL 325 (331)
Q Consensus 306 s~d~~egi~aflekr~p~f~ 325 (331)
++|++|++++|++||+|.|+
T Consensus 240 ~~~~~~~i~~f~~~r~~~~~ 259 (260)
T PRK07511 240 HADALEGIAAFLEKRAPDYK 259 (260)
T ss_pred CchHHHHHHHHhccCCCCCC
Confidence 99999999999999999995
No 45
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4e-56 Score=409.44 Aligned_cols=254 Identities=31% Similarity=0.424 Sum_probs=222.4
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
+|+.|.+++ +++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++........
T Consensus 2 ~~~~i~~~~--~~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~~ 77 (257)
T PRK06495 2 MMSQLKLEV--SDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAG-KVFCAGADLKGRPDVIKGPG 77 (257)
T ss_pred CcceEEEEe--eCCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCcccCcCHHhHhhccCCch
Confidence 467788998 8999999999998 5999999999999999999999999999999999 69999999998743211111
Q ss_pred hhh-hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHH
Q 020093 147 ENF-GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK 225 (331)
Q Consensus 147 ~~~-~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~ 225 (331)
... ......+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+. |++++|++++|..+
T Consensus 78 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~ 154 (257)
T PRK06495 78 DLRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSL 154 (257)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHH
Confidence 111 11223567788999999999999999999999999999999999999999999999986 45788999999999
Q ss_pred HHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHh
Q 020093 226 AREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFY 304 (331)
Q Consensus 226 a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~ 304 (331)
|++|+++|+.++|+||+++||||++||++++.+.+.+++++|++.||.+++.+|+.++...+. .....+.+...+..++
T Consensus 155 a~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~ 234 (257)
T PRK06495 155 TRRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIASKSPLATRLAKDALNTIENMSLRDGYRYEQDITAKLA 234 (257)
T ss_pred HHHHHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999976543 3344455666677788
Q ss_pred CChhHHHHHHHHhcCCCCCCCCC
Q 020093 305 GTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 305 ~s~d~~egi~aflekr~p~f~~~ 327 (331)
.++|++||+++|++||+|.|+++
T Consensus 235 ~s~d~~egi~af~~kr~p~~~~~ 257 (257)
T PRK06495 235 KTEDAKEAQRAFLEKRPPVFKGR 257 (257)
T ss_pred cChHHHHHHHHHhccCCCCCCCC
Confidence 99999999999999999999863
No 46
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=4.7e-56 Score=412.59 Aligned_cols=254 Identities=30% Similarity=0.432 Sum_probs=219.8
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
.|++|.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||+|.| ++||+|+|++++........
T Consensus 6 ~~~~i~~~~--~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~ 82 (275)
T PRK09120 6 RWDTVKVEV--EDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAG-DAWSAGMDLKEYFRETDAQP 82 (275)
T ss_pred ccccEEEEE--ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCC-CceecCcCHHHHhhccccch
Confidence 477899999 899999999999999999999999999999999999999999999999 69999999998642111111
Q ss_pred h-hhh--hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCH
Q 020093 147 E-NFG--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP 223 (331)
Q Consensus 147 ~-~~~--~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~ 223 (331)
. ... ......++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~ 162 (275)
T PRK09120 83 EILQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGH 162 (275)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCH
Confidence 1 011 1123467788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCc-hhHHHHHH--HHH
Q 020093 224 KKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGH-AGLQTLGG--DAT 300 (331)
Q Consensus 224 ~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~-~~~~~~~~--~~~ 300 (331)
.+|++|+++|+.++|+||+++||||+|||+++|++++.+++++|+..||.+++.+|+.++...... ....+.+. ...
T Consensus 163 ~~a~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~ 242 (275)
T PRK09120 163 RDALYYIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKLLEKNPVVLRAAKDGFKRVRELTWDQAEDYLYAKLEQ 242 (275)
T ss_pred HHHHHHHhcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999765432 22333332 223
Q ss_pred HHHhCCh-hHHHHHHHHhcCCCCC
Q 020093 301 LIFYGTE-EGSEGKTAFVERRRPD 323 (331)
Q Consensus 301 ~~~~~s~-d~~egi~aflekr~p~ 323 (331)
..++.++ |++||+++|++||..+
T Consensus 243 ~~~~~~~~d~~eg~~afl~kr~~~ 266 (275)
T PRK09120 243 ANSLDPEGGREEGLKQFLDDKSYK 266 (275)
T ss_pred HHhhCCHHHHHHHHHHHHhcccCC
Confidence 4457788 8999999999998733
No 47
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.2e-56 Score=409.17 Aligned_cols=254 Identities=36% Similarity=0.497 Sum_probs=228.3
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
..|.+++ +++|++||||||+++|+||.+|+.+|.+++++++.|+++++|||+|.| ++||+|+|++++....... .
T Consensus 5 ~~i~~~~--~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~--~ 79 (259)
T PRK06688 5 TDLLVEL--EDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAG-RAFSAGGDIKDFPKAPPKP--P 79 (259)
T ss_pred CceEEEE--ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCccCccCHHHHhccCcch--H
Confidence 4588888 899999999999999999999999999999999999999999999999 6999999999875422111 1
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHH
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~ 228 (331)
.....+.+++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..+|++
T Consensus 80 ~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~ 159 (259)
T PRK06688 80 DELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAE 159 (259)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHH
Confidence 11223457888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCCh
Q 020093 229 MWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTE 307 (331)
Q Consensus 229 l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~ 307 (331)
|+++|++++++||+++||||+++|++++.+.+.+++++|+..+|.+++.+|+.++...+. .......|...+..++.++
T Consensus 160 l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~ 239 (259)
T PRK06688 160 MLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGPASALRYTKRAINAATLTELEEALAREAAGFGRLLRTP 239 (259)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhCCH
Confidence 999999999999999999999999999999999999999999999999999999876543 3344555666777889999
Q ss_pred hHHHHHHHHhcCCCCCCCCC
Q 020093 308 EGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 308 d~~egi~aflekr~p~f~~~ 327 (331)
|.++++++|++||+|+|+++
T Consensus 240 ~~~~~~~af~~~~~p~~~~~ 259 (259)
T PRK06688 240 DFREGATAFIEKRKPDFTGF 259 (259)
T ss_pred HHHHHHHHHHcCCCCCCCCC
Confidence 99999999999999999864
No 48
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-55 Score=407.28 Aligned_cols=254 Identities=28% Similarity=0.382 Sum_probs=222.7
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchh
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (331)
++.+.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.| ++||+|+|++++.........
T Consensus 2 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~ 78 (262)
T PRK07509 2 MDRVSVTI--EDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEG-GAFCAGLDVKSVASSPGNAVK 78 (262)
T ss_pred CceEEEEe--eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCC-CCcCCCcCHHHHhcccchhhh
Confidence 46788999 899999999999999999999999999999999999999999999999 599999999987532111111
Q ss_pred hhh------hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhh
Q 020093 148 NFG------RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221 (331)
Q Consensus 148 ~~~------~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~v 221 (331)
... ...+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~ 158 (262)
T PRK07509 79 LLFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLV 158 (262)
T ss_pred hHhhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHh
Confidence 110 01123466678899999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHH
Q 020093 222 GPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDAT 300 (331)
Q Consensus 222 G~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~ 300 (331)
|..+|++|+++|++++|+||+++||||++++ ++.+++.+++++|+..+|.+++.+|+.++..... .......+...+
T Consensus 159 g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~--~~~~~a~~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~ 236 (262)
T PRK07509 159 RKDVARELTYTARVFSAEEALELGLVTHVSD--DPLAAALALAREIAQRSPDAIAAAKRLINRSWTASVRALLARESVEQ 236 (262)
T ss_pred CHHHHHHHHHcCCCcCHHHHHHcCChhhhhc--hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999995 4788999999999999999999999999986543 233445566677
Q ss_pred HHHhCChhHHHHHHHHhcCCCCCCCC
Q 020093 301 LIFYGTEEGSEGKTAFVERRRPDFLK 326 (331)
Q Consensus 301 ~~~~~s~d~~egi~aflekr~p~f~~ 326 (331)
..++.++|++||+++|+|||+|.|++
T Consensus 237 ~~~~~~~d~~e~~~af~ekr~p~~~~ 262 (262)
T PRK07509 237 IRLLLGKNQKIAVKAQMKKRAPKFLD 262 (262)
T ss_pred HHHhcChhHHHHHHHHhcCCCCCCCC
Confidence 78889999999999999999999974
No 49
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.2e-55 Score=404.08 Aligned_cols=251 Identities=29% Similarity=0.374 Sum_probs=222.2
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCC-cch
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-ADY 146 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~-~~~ 146 (331)
|+++.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++..... ...
T Consensus 1 ~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~ 77 (255)
T PRK07260 1 FEHIIYEV--EDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANG-KVFSVGGDLVEMKRAVDEDDV 77 (255)
T ss_pred CCceEEEE--ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccccCHHHHHhhccccch
Confidence 45688888 899999999999999999999999999999999999999999999999 69999999998753111 111
Q ss_pred hhhh--hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHH
Q 020093 147 ENFG--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224 (331)
Q Consensus 147 ~~~~--~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 224 (331)
.... ...+.+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~ 157 (255)
T PRK07260 78 QSLVKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLN 157 (255)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHH
Confidence 1111 11235677889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHH
Q 020093 225 KAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIF 303 (331)
Q Consensus 225 ~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~ 303 (331)
++++|+++|++++|+||+++||||+++|.+++.+++.++++++++.+|.+++.+|+.++..... .......+...+..+
T Consensus 158 ~a~~l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~ 237 (255)
T PRK07260 158 RATHLAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGSSNSYAAIKSLVWESFFKGWEDYAKLELALQESL 237 (255)
T ss_pred HHHHHHHhCCccCHHHHHHcCCcceecCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999986543 333445566667778
Q ss_pred hCChhHHHHHHHHhcCCC
Q 020093 304 YGTEEGSEGKTAFVERRR 321 (331)
Q Consensus 304 ~~s~d~~egi~aflekr~ 321 (331)
+.++|++||+++|++||+
T Consensus 238 ~~~~~~~e~~~af~~kr~ 255 (255)
T PRK07260 238 AFKEDFKEGVRAFSERRR 255 (255)
T ss_pred hcCHHHHHHHHHHHhcCC
Confidence 899999999999999985
No 50
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.2e-55 Score=401.32 Aligned_cols=245 Identities=23% Similarity=0.384 Sum_probs=216.5
Q ss_pred cEEEEEeeCC---CEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch
Q 020093 70 DIIYEKAVGE---GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 70 ~v~~~~~~~~---~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
.|.+++ ++ +|++||||||+++|+||.+|+++|.++++.++.|+++++|||+|.| ++||+|+|++++.......
T Consensus 4 ~i~~~~--~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~- 79 (251)
T PRK06023 4 HILVER--PGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTE-GCFSAGNDMQDFLAAAMGG- 79 (251)
T ss_pred eEEEEe--ecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCeecCcCHHHHhhccccc-
Confidence 578887 66 4999999999999999999999999999999999999999999999 5999999999865321111
Q ss_pred hhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHH
Q 020093 147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (331)
Q Consensus 147 ~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a 226 (331)
... ...+.+++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..+|
T Consensus 80 ~~~-~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a 158 (251)
T PRK06023 80 TSF-GSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRA 158 (251)
T ss_pred hhh-HHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHHH
Confidence 111 1123467788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCchhHHHHHHHHHHHHhCC
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFYGT 306 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~s 306 (331)
++++++|+.++|+||+++||||+|||.+++.+++.+++++|+..||.+++.+|+.++..........+.+...+..++.+
T Consensus 159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~l~~~~~~e~~~~~~~~~~ 238 (251)
T PRK06023 159 FALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAKPPQALQIARDLMRGPREDILARIDEEAKHFAARLKS 238 (251)
T ss_pred HHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999865433333344455566778899
Q ss_pred hhHHHHHHHHhcC
Q 020093 307 EEGSEGKTAFVER 319 (331)
Q Consensus 307 ~d~~egi~aflek 319 (331)
+|++||+++|+||
T Consensus 239 ~~~~e~~~af~e~ 251 (251)
T PRK06023 239 AEARAAFEAFMRR 251 (251)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999985
No 51
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.4e-55 Score=397.79 Aligned_cols=242 Identities=30% Similarity=0.432 Sum_probs=213.8
Q ss_pred EEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhh
Q 020093 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG 150 (331)
Q Consensus 71 v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~ 150 (331)
|.+++ +++|++||||||+++|+||.+|+.+|.++++++++| ++++|||||.| ++||+|+|+++... ....
T Consensus 2 ~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g-~~F~aG~Dl~~~~~-----~~~~- 71 (243)
T PRK07854 2 IGVTR--DGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQG-TVFCAGADLSGDVY-----ADDF- 71 (243)
T ss_pred ceEEE--eCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCC-CceecccCCccchh-----HHHH-
Confidence 56777 899999999999999999999999999999999865 99999999999 69999999985211 1111
Q ss_pred hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHH
Q 020093 151 RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMW 230 (331)
Q Consensus 151 ~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ 230 (331)
...+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.++|++|+
T Consensus 72 ~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ 151 (243)
T PRK07854 72 PDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAML 151 (243)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHH
Confidence 11245677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCchhHHHHHHHHHHHHhCChhHH
Q 020093 231 FLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFYGTEEGS 310 (331)
Q Consensus 231 ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 310 (331)
++|++++|+||+++||||+|++ +. ++.+++++|++.||.+++.+|+.++.. .......+.+......++.++|++
T Consensus 152 ltg~~~~a~eA~~~Glv~~v~~---~~-~a~~~a~~l~~~~~~a~~~~K~~l~~~-~~~~~~~~~e~~~~~~~~~~~d~~ 226 (243)
T PRK07854 152 LGAEKLTAEQALATGMANRIGT---LA-DAQAWAAEIAGLAPLALQHAKRVLNDD-GAIEEAWPAHKELFDKAWASQDAI 226 (243)
T ss_pred HcCCCcCHHHHHHCCCcccccC---HH-HHHHHHHHHHhCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhcCchHH
Confidence 9999999999999999999975 33 799999999999999999999999875 223334455666777788999999
Q ss_pred HHHHHHhcCCCCCCCCC
Q 020093 311 EGKTAFVERRRPDFLKF 327 (331)
Q Consensus 311 egi~aflekr~p~f~~~ 327 (331)
||+++|++||+|+|+++
T Consensus 227 eg~~af~~kr~p~~~~~ 243 (243)
T PRK07854 227 EAQVARIEKRPPKFQGA 243 (243)
T ss_pred HHHHHHhCCCCCCCCCC
Confidence 99999999999999763
No 52
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.8e-55 Score=399.71 Aligned_cols=246 Identities=25% Similarity=0.320 Sum_probs=217.9
Q ss_pred EEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhh
Q 020093 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG 150 (331)
Q Consensus 71 v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~ 150 (331)
|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.| ++||+|+|++++.... ....
T Consensus 2 i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~---~~~~- 74 (248)
T PRK06072 2 IKVES--REGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEG-RAFCVGADLSEFAPDF---AIDL- 74 (248)
T ss_pred eEEEE--ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCcccCcCHHHHhhhh---HHHH-
Confidence 56777 899999999999999999999999999999999999999999999999 6999999999764311 1111
Q ss_pred hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHH
Q 020093 151 RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMW 230 (331)
Q Consensus 151 ~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ 230 (331)
...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|. ++++++
T Consensus 75 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~-~a~~ll 153 (248)
T PRK06072 75 RETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQ-RFYEIL 153 (248)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhH-HHHHHH
Confidence 1224567788999999999999999999999999999999999999999999999999999999999999997 899999
Q ss_pred HcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCChhH
Q 020093 231 FLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTEEG 309 (331)
Q Consensus 231 ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~ 309 (331)
++|+.++|+||+++||||++ +++.+++.++|++|+..||.+++.+|+.++..... .....+.+...+..++.++|+
T Consensus 154 l~g~~~~a~eA~~~Glv~~~---~~~~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~ 230 (248)
T PRK06072 154 VLGGEFTAEEAERWGLLKIS---EDPLSDAEEMANRISNGPFQSYIAAKRMINLVLYNDLEEFLEYESAIQGYLGKTEDF 230 (248)
T ss_pred HhCCccCHHHHHHCCCcccc---chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhCChhH
Confidence 99999999999999999963 46789999999999999999999999999876432 334445566677788999999
Q ss_pred HHHHHHHhcCCCCCCCCC
Q 020093 310 SEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 310 ~egi~aflekr~p~f~~~ 327 (331)
+||+++|++||+|+|+++
T Consensus 231 ~eg~~af~~kr~p~~~~~ 248 (248)
T PRK06072 231 KEGISSFKEKREPKFKGI 248 (248)
T ss_pred HHHHHHHhcCCCCCCCCC
Confidence 999999999999999864
No 53
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=8.3e-55 Score=400.74 Aligned_cols=253 Identities=34% Similarity=0.521 Sum_probs=221.1
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
.+..+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||.| ++||+|+||+++........
T Consensus 3 ~~~~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g-~~FsaG~Dl~~~~~~~~~~~ 79 (257)
T COG1024 3 TYETILVER--EDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAG-KAFSAGADLKELLSPEDGNA 79 (257)
T ss_pred CCCeeEEEe--eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CceecccCHHHHhcccchhH
Confidence 346688888 788999999999999999999999999999999999999999999999 79999999998764111111
Q ss_pred hhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHH
Q 020093 147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (331)
Q Consensus 147 ~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a 226 (331)
........+.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus 80 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a 159 (257)
T COG1024 80 AENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRA 159 (257)
T ss_pred HHHHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHH
Confidence 11112234568889999999999999999999999999999999999999999999999999987999999999999999
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCC-CcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHh
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPL-EKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFY 304 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~ 304 (331)
++|++||+.++++||+++|||+++++. +++.+.+.+++++++. +|.++..+|+.++..... .......+...+...+
T Consensus 160 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~-~~~a~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~ 238 (257)
T COG1024 160 KELLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAA-PPLALAATKRLVRAALEADLAEALEAEALAFARLF 238 (257)
T ss_pred HHHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999986 7999999999999999 999999999999987543 2333344444444467
Q ss_pred CChhHHHHHHHHhcCCCCCC
Q 020093 305 GTEEGSEGKTAFVERRRPDF 324 (331)
Q Consensus 305 ~s~d~~egi~aflekr~p~f 324 (331)
.++|++||+++|++ |+|.|
T Consensus 239 ~~~d~~eg~~a~~~-r~p~~ 257 (257)
T COG1024 239 SSEDFREGVRAFLE-RKPVF 257 (257)
T ss_pred cChhHHHHHHHHHc-cCCCC
Confidence 89999999999999 99988
No 54
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=8.9e-55 Score=402.00 Aligned_cols=249 Identities=33% Similarity=0.424 Sum_probs=217.0
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
+.|.++.. +++|++||||||+++|+||.+|+.+|.++|++++.|++|++|||||.| ++||+|+|++++...... .
T Consensus 9 ~~i~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~--~- 83 (265)
T PLN02888 9 NLILVPKS-RNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSG-RAFCSGVDLTAAEEVFKG--D- 83 (265)
T ss_pred CeEEEEec-cCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CcccCCCCHHHHHhhccc--h-
Confidence 45777742 688999999999999999999999999999999999999999999999 699999999976421110 0
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHH
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~ 228 (331)
. .....+++..|..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|+++|++
T Consensus 84 ~-~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~ 162 (265)
T PLN02888 84 V-KDVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRARE 162 (265)
T ss_pred h-hHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHHH
Confidence 1 111235667889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHh--C
Q 020093 229 MWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFY--G 305 (331)
Q Consensus 229 l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~--~ 305 (331)
|+++|++++|+||+++||||+|||++++.+++.+++++|++.+|.+++.+|+.++...+. .......+...+..++ .
T Consensus 163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~ 242 (265)
T PLN02888 163 VSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNNQGMVLRYKSVINDGLKLDLGHALQLEKERAHDYYNGM 242 (265)
T ss_pred HHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999999876543 3333444444445554 5
Q ss_pred ChhHHHHHHHHhcCCCCC
Q 020093 306 TEEGSEGKTAFVERRRPD 323 (331)
Q Consensus 306 s~d~~egi~aflekr~p~ 323 (331)
++|++||+++|+|||+|+
T Consensus 243 ~~d~~e~~~af~ekr~~~ 260 (265)
T PLN02888 243 TKEQFQKMQEFIAGRSSK 260 (265)
T ss_pred CHHHHHHHHHHHhcCCCC
Confidence 899999999999999886
No 55
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=1.1e-54 Score=398.28 Aligned_cols=246 Identities=20% Similarity=0.336 Sum_probs=211.8
Q ss_pred EEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhh
Q 020093 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG 150 (331)
Q Consensus 71 v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~ 150 (331)
|.+++ +++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++... .....
T Consensus 3 v~~~~--~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g-~~FcaG~Dl~~~~~~---~~~~~- 74 (251)
T TIGR03189 3 VWLER--DGKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEG-PHFSFGASVAEHMPD---QCAAM- 74 (251)
T ss_pred EEEEe--eCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCC-CceecCcChhhhCch---hHHHH-
Confidence 67788 8899999999997 5999999999999999999999999999999999 599999999875311 11111
Q ss_pred hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHH
Q 020093 151 RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMW 230 (331)
Q Consensus 151 ~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ 230 (331)
.....+++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++ ++++|++++|..+|++|+
T Consensus 75 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~-~~~~l~~~vg~~~a~~l~ 153 (251)
T TIGR03189 75 LASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPA-ASCLLPERMGRVAAEDLL 153 (251)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCc-hHHHHHHHhCHHHHHHHH
Confidence 1123467788999999999999999999999999999999999999999999999999874 578999999999999999
Q ss_pred HcCCCCCHHHHHhcCcccEecCCCcHHHHHHHH-HHHHhccCHHHHHHHHHHHHccccCc-hhHH-HHHHHHHHHHhCCh
Q 020093 231 FLARFYTAEEAEKMGLVNTVVPLEKLEQETIKW-SREILRNSPTAIRVLKSALNAVDDGH-AGLQ-TLGGDATLIFYGTE 307 (331)
Q Consensus 231 ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~-a~~la~~~~~a~~~~K~~l~~~~~~~-~~~~-~~~~~~~~~~~~s~ 307 (331)
++|++++|+||+++||||+|+++++ +.+.++ +++|+..||.+++.+|++++...... .... ..+......++.++
T Consensus 154 ltg~~~~a~eA~~~Glv~~v~~~~~--~~a~~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s~ 231 (251)
T TIGR03189 154 YSGRSIDGAEGARIGLANAVAEDPE--NAALAWFDEHPAKLSASSLRFAVRAARLGMNERVKAKIAEVEALYLEELMATH 231 (251)
T ss_pred HcCCCCCHHHHHHCCCcceecCcHH--HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHhCCH
Confidence 9999999999999999999997543 566666 69999999999999999998765432 2222 34555567788999
Q ss_pred hHHHHHHHHhcCCCCCCCCC
Q 020093 308 EGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 308 d~~egi~aflekr~p~f~~~ 327 (331)
|++||+++|++||+|.|+++
T Consensus 232 d~~eg~~af~ekr~p~~~~~ 251 (251)
T TIGR03189 232 DAVEGLNAFLEKRPALWEDR 251 (251)
T ss_pred hHHHHHHHHHhcCCCCCCCC
Confidence 99999999999999999763
No 56
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.6e-55 Score=398.41 Aligned_cols=239 Identities=27% Similarity=0.357 Sum_probs=209.5
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhh-hhhhHHH
Q 020093 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF-GRLNVLD 156 (331)
Q Consensus 78 ~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~-~~~~~~~ 156 (331)
+++|++||||||++ |+||.+|+.+|.++++.++.|++||+|||+|.| ++||+|+|++++..... ..... .......
T Consensus 9 ~~~v~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G-~~F~aG~Dl~~~~~~~~-~~~~~~~~~~~~~ 85 (249)
T PRK07938 9 EPGIAEVTVDYPPV-NALPSAGWFALADAITAAGADPDTRVVVLRAEG-RGFNAGVDIKELQATPG-FTALIDANRGCFA 85 (249)
T ss_pred CCCEEEEEECCCCc-ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCC-CceecCcCHHHHhhccc-hhHHHHHHHHHHH
Confidence 78999999999985 999999999999999999999999999999999 69999999998643211 01101 0112346
Q ss_pred HHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCC
Q 020093 157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFY 236 (331)
Q Consensus 157 l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~ 236 (331)
++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++ |++++|++++|+.++++|+++|+.+
T Consensus 86 ~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~ltg~~~ 162 (249)
T PRK07938 86 AFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTAATI 162 (249)
T ss_pred HHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHhCCcC
Confidence 7778999999999999999999999999999999999999999999999985 4578899999999999999999999
Q ss_pred CHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCChhHHHHHHH
Q 020093 237 TAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTEEGSEGKTA 315 (331)
Q Consensus 237 ~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~a 315 (331)
+|+||+++||||+|||++++++++.+++++|+..+|.+++.+|+.++...+. .....+.+......++.++|++||+++
T Consensus 163 ~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~a 242 (249)
T PRK07938 163 TAAELHHFGSVEEVVPRDQLDEAALEVARKIAAKDTRVIRAAKEALNGIDPQDVERSYRWEQGFTFELNLAGVSDEHRDA 242 (249)
T ss_pred CHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999876443 233345555566677899999999999
Q ss_pred HhcCCCC
Q 020093 316 FVERRRP 322 (331)
Q Consensus 316 flekr~p 322 (331)
|+|||+|
T Consensus 243 f~ekr~p 249 (249)
T PRK07938 243 FVEKRKA 249 (249)
T ss_pred HHhcCCC
Confidence 9999987
No 57
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-54 Score=398.63 Aligned_cols=246 Identities=27% Similarity=0.351 Sum_probs=211.5
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
++|.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++..... . .
T Consensus 3 ~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g-~~FcaG~Dl~~~~~~~~-~--~ 76 (254)
T PRK08259 3 MSVRVER--NGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAG-GTFCAGADLKAVGTGRG-N--R 76 (254)
T ss_pred ceEEEEE--ECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCccCCcChHHHhcccc-h--h
Confidence 4588888 899999999999999999999999999999999999999999999999 69999999998653211 0 0
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHH
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~ 228 (331)
........+...+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++
T Consensus 77 ~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~ 156 (254)
T PRK08259 77 LHPSGDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMD 156 (254)
T ss_pred hhhhhcchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHHHH
Confidence 10000111122335899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCCh
Q 020093 229 MWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTE 307 (331)
Q Consensus 229 l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~ 307 (331)
|+++|+.++|+||+++||||+|||.+++.+++.++|++|++.||.+++.+|++++..... .......+...+...+. +
T Consensus 157 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~-~ 235 (254)
T PRK08259 157 LILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELAAFPQTCLRADRLSALEQWGLPEEAALANEFAHGLAVLA-A 235 (254)
T ss_pred HHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh-h
Confidence 999999999999999999999999999999999999999999999999999999876443 23333445444455555 9
Q ss_pred hHHHHHHHHhcCCC
Q 020093 308 EGSEGKTAFVERRR 321 (331)
Q Consensus 308 d~~egi~aflekr~ 321 (331)
|++||+++|++|+.
T Consensus 236 d~~egi~af~~~~~ 249 (254)
T PRK08259 236 EALEGAARFAAGAG 249 (254)
T ss_pred HHHHHHHHHHhhhc
Confidence 99999999998744
No 58
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=2.1e-54 Score=397.60 Aligned_cols=252 Identities=20% Similarity=0.254 Sum_probs=217.5
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
+|+++.+++ +++|++||||||+++|+||.+|+.+|.+++++++ +++++|||+|.| ++||+|+||+++........
T Consensus 2 ~~~~i~~~~--~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g-~~FsaG~Dl~~~~~~~~~~~ 76 (255)
T PRK07112 2 DYQTIRVRQ--QGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLP-EVFCFGADFSAIAEKPDAGR 76 (255)
T ss_pred CCceEEEEe--eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCC-CCcccCcCHHHHhhccccch
Confidence 356789998 8999999999999999999999999999999998 369999999999 69999999998753211111
Q ss_pred hh-hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHH
Q 020093 147 EN-FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK 225 (331)
Q Consensus 147 ~~-~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~ 225 (331)
.. .....+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ +.+|++++|..+
T Consensus 77 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~ 155 (255)
T PRK07112 77 ADLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQK 155 (255)
T ss_pred hhhhhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHH
Confidence 11 1112235678889999999999999999999999999999999999999999999999998764 678999999999
Q ss_pred HHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCchhHHHHHHHHHHHHhC
Q 020093 226 AREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFYG 305 (331)
Q Consensus 226 a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~ 305 (331)
|++|+++|++++|+||++|||||+|+|+++. .+.+++++|+..+|.+++.+|+.++..........+.+......++.
T Consensus 156 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~~~a~~l~~~~p~a~~~~K~~~~~~~~~~~~~~~~e~~~~~~~~~ 233 (255)
T PRK07112 156 AHYMTLMTQPVTAQQAFSWGLVDAYGANSDT--LLRKHLLRLRCLNKAAVARYKSYASTLDDTVAAARPAALAANIEMFA 233 (255)
T ss_pred HHHHHHhCCcccHHHHHHcCCCceecCcHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999987653 57889999999999999999999986533333445566666777889
Q ss_pred ChhHHHHHHHHhcCCCCCCCC
Q 020093 306 TEEGSEGKTAFVERRRPDFLK 326 (331)
Q Consensus 306 s~d~~egi~aflekr~p~f~~ 326 (331)
++|++||+++|++||+|.|+.
T Consensus 234 ~~~~~eg~~af~~kr~p~~~~ 254 (255)
T PRK07112 234 DPENLRKIARYVETGKFPWEA 254 (255)
T ss_pred ChHHHHHHHHHHcCCCCCCCC
Confidence 999999999999999999975
No 59
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-54 Score=398.08 Aligned_cols=245 Identities=26% Similarity=0.348 Sum_probs=217.0
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
+.|.+++ +++|++||||||+++|+||.+|+++|.++|+.++.|+++++|||+|.| ++||+|+|++++..........
T Consensus 3 ~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 79 (249)
T PRK05870 3 DPVLLDV--DDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAG-KAFCAGADLTALGAAPGRPAED 79 (249)
T ss_pred ccEEEEc--cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCeecCcChHHHhcccccchHH
Confidence 4588888 899999999999999999999999999999999999999999999999 6999999999875321111111
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHH
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~ 228 (331)
. ...+.+++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|+.+|++
T Consensus 80 ~-~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~ 158 (249)
T PRK05870 80 G-LRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARA 158 (249)
T ss_pred H-HHHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHHHH
Confidence 1 112345667889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHcccc-C-chhHHHHHHHHHHHHhCC
Q 020093 229 MWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDD-G-HAGLQTLGGDATLIFYGT 306 (331)
Q Consensus 229 l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~-~~~~~~~~~~~~~~~~~s 306 (331)
|+++|++++|+||+++||||+++ +++.+++.++|++|+..||.+++.+|+.++.... . .....+.+...+..++.+
T Consensus 159 l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~~ 236 (249)
T PRK05870 159 ALLFGMRFDAEAAVRHGLALMVA--DDPVAAALELAAGPAAAPRELVLATKASMRATASLAQHAAAVEFELGPQAASVQS 236 (249)
T ss_pred HHHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999 7899999999999999999999999999998653 2 334445566677788899
Q ss_pred hhHHHHHHHHhcC
Q 020093 307 EEGSEGKTAFVER 319 (331)
Q Consensus 307 ~d~~egi~aflek 319 (331)
+|++||+++|+|+
T Consensus 237 ~d~~eg~~af~~~ 249 (249)
T PRK05870 237 PEFAARLAAAQRR 249 (249)
T ss_pred hhHHHHHHHHhcC
Confidence 9999999999985
No 60
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.6e-54 Score=397.12 Aligned_cols=252 Identities=26% Similarity=0.416 Sum_probs=219.8
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchh
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (331)
...+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.........
T Consensus 5 ~~~i~~~~--~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~ 81 (260)
T PRK07827 5 DTLVRYAV--DGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTG-GTFCAGADLSEAGGGGGDPYD 81 (260)
T ss_pred CcceEEEe--eCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCC-CCccCCcChHHHhhcccCchh
Confidence 35688888 899999999999999999999999999999999999999999999999 699999999987532111111
Q ss_pred h--hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHH
Q 020093 148 N--FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK 225 (331)
Q Consensus 148 ~--~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~ 225 (331)
. .....+.+++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++ ..+
T Consensus 82 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~-~~~ 160 (260)
T PRK07827 82 AAVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLS-PRA 160 (260)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhh-HHH
Confidence 1 0112345678889999999999999999999999999999999999999999999999999999999999875 568
Q ss_pred HHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHh
Q 020093 226 AREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFY 304 (331)
Q Consensus 226 a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~ 304 (331)
+++++++|+.++|+||+++||||++++ ++++.+.+++++|++.+|.+++.+|+.++..... .....+.+...+..++
T Consensus 161 a~~l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~ 238 (260)
T PRK07827 161 AARYYLTGEKFGAAEAARIGLVTAAAD--DVDAAVAALLADLRRGSPQGLAESKALTTAAVLAGFDRDAEELTEESARLF 238 (260)
T ss_pred HHHHHHhCCccCHHHHHHcCCcccchH--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999974 5999999999999999999999999999986543 2334455556677788
Q ss_pred CChhHHHHHHHHhcCCCCCCC
Q 020093 305 GTEEGSEGKTAFVERRRPDFL 325 (331)
Q Consensus 305 ~s~d~~egi~aflekr~p~f~ 325 (331)
.++|++|++++|++||+|+|+
T Consensus 239 ~~~~~~~~~~af~~kr~p~~~ 259 (260)
T PRK07827 239 VSDEAREGMTAFLQKRPPRWA 259 (260)
T ss_pred cChhHHHHHHHHhcCCCCCCC
Confidence 999999999999999999995
No 61
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=8.7e-55 Score=415.02 Aligned_cols=255 Identities=23% Similarity=0.319 Sum_probs=223.4
Q ss_pred cEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCC-cchhh
Q 020093 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-ADYEN 148 (331)
Q Consensus 70 ~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~-~~~~~ 148 (331)
.|.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||.|+++||+|+|++++..... .....
T Consensus 4 ~v~~~~--~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 81 (342)
T PRK05617 4 EVLAEV--EGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLA 81 (342)
T ss_pred eEEEEE--ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchh
Confidence 588888 899999999999999999999999999999999999999999999999669999999998643111 00110
Q ss_pred --hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHH
Q 020093 149 --FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (331)
Q Consensus 149 --~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a 226 (331)
.......+++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .+|
T Consensus 82 ~~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~~a 160 (342)
T PRK05617 82 ADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG-ALG 160 (342)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc-HHH
Confidence 11112346778899999999999999999999999999999999999999999999999999999999999977 689
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCCCcHHHH-----------------------------------------------
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQE----------------------------------------------- 259 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~----------------------------------------------- 259 (331)
++|++||+.++|+||+++||||+++|++++.+.
T Consensus 161 ~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 240 (342)
T PRK05617 161 TYLALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAGDT 240 (342)
T ss_pred HHHHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999998876
Q ss_pred ---------------HHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCChhHHHHHHHHh-cC-CC
Q 020093 260 ---------------TIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTEEGSEGKTAFV-ER-RR 321 (331)
Q Consensus 260 ---------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~afl-ek-r~ 321 (331)
+.+++++|++.||.+++.+|++++...+. ..+....+......++.++|++||+++|+ +| |+
T Consensus 241 ~~~~~~~l~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~egv~afl~ek~r~ 320 (342)
T PRK05617 241 VEDIIAALEADGGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRSPDFVEGVRAVLIDKDRN 320 (342)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCchhhccceEEEcCCCC
Confidence 88999999999999999999999876543 33445666677778889999999999997 76 99
Q ss_pred CCCCCC
Q 020093 322 PDFLKF 327 (331)
Q Consensus 322 p~f~~~ 327 (331)
|+|++.
T Consensus 321 p~~~~~ 326 (342)
T PRK05617 321 PKWSPA 326 (342)
T ss_pred CCCCCC
Confidence 999876
No 62
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=9.2e-54 Score=412.73 Aligned_cols=256 Identities=23% Similarity=0.295 Sum_probs=217.8
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchh
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (331)
+..|.+++ +++|++||||||+++|+||.+|+.+|.++|+.++.|++||+|||+|.| ++||+|+||+++.........
T Consensus 10 ~~~v~~~~--~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g-~~FcaG~Dl~~~~~~~~~~~~ 86 (379)
T PLN02874 10 EEVVLGEE--KGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAG-RAFSAGGDLKMFYDGRESDDS 86 (379)
T ss_pred CCceEEEE--ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CCccCccCHHHHHhhcccchH
Confidence 45688888 899999999999999999999999999999999999999999999999 699999999987432111111
Q ss_pred hhh-hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHH
Q 020093 148 NFG-RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (331)
Q Consensus 148 ~~~-~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a 226 (331)
... ....+.+...|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. ++
T Consensus 87 ~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~-~a 165 (379)
T PLN02874 87 CLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGH-LG 165 (379)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHH-HH
Confidence 111 1122345678899999999999999999999999999999999999999999999999999999999999986 89
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCCCcHHH---H--------------------------------------------
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQ---E-------------------------------------------- 259 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~---~-------------------------------------------- 259 (331)
++|++||++++|+||+++|||+++||++++.+ +
T Consensus 166 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 245 (379)
T PLN02874 166 EYLALTGARLNGKEMVACGLATHFVPSEKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKD 245 (379)
T ss_pred HHHHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCC
Confidence 99999999999999999999999999988865 2
Q ss_pred --------------------HHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhC---ChhHHHHHHH
Q 020093 260 --------------------TIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYG---TEEGSEGKTA 315 (331)
Q Consensus 260 --------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~---s~d~~egi~a 315 (331)
+.+++++|++.||.+++.+|++++...+. ..+....+......++. ++|++||++|
T Consensus 246 ~~~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~A 325 (379)
T PLN02874 246 TVEEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIRA 325 (379)
T ss_pred CHHHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccce
Confidence 24789999999999999999999976542 33444555454444555 8999999999
Q ss_pred Hh-cC-CCCCCCCC
Q 020093 316 FV-ER-RRPDFLKF 327 (331)
Q Consensus 316 fl-ek-r~p~f~~~ 327 (331)
|+ +| |+|+|++.
T Consensus 326 flidK~r~P~w~~~ 339 (379)
T PLN02874 326 LVIDKDNAPKWNPS 339 (379)
T ss_pred EEEcCCCCCCCCCC
Confidence 97 88 99999864
No 63
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=3e-53 Score=394.14 Aligned_cols=256 Identities=16% Similarity=0.201 Sum_probs=218.6
Q ss_pred CCCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCC-CceeccccccchhcCCC
Q 020093 65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT-EAFCSGGDQALRTRDGY 143 (331)
Q Consensus 65 ~~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~-~~FcaG~Dl~~~~~~~~ 143 (331)
+...+.|.+++. +++|++||||||+ +|+||.+|+.+|.+++++++.|+++|+|||||.|+ ++||+|+|++++.....
T Consensus 7 ~~~~~~i~~~~~-~~~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~ 84 (278)
T PLN03214 7 PGATPGVRVDRR-PGGIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKT 84 (278)
T ss_pred CCCCCceEEEEc-CCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhcccc
Confidence 344567888872 4889999999985 69999999999999999999999999999999973 59999999998643111
Q ss_pred cchhhh-hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccC-CCCchHHHHHHHhh
Q 020093 144 ADYENF-GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGS-FDAGYGSSIMSRLV 221 (331)
Q Consensus 144 ~~~~~~-~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl-~p~~g~~~~L~r~v 221 (331)
...... .......++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|+ +|+++++++|++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~ 164 (278)
T PLN03214 85 SAARYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVI 164 (278)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhc
Confidence 110000 0111235677899999999999999999999999999999999999999999999999 59888899999999
Q ss_pred CHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHH
Q 020093 222 GPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDAT 300 (331)
Q Consensus 222 G~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~ 300 (331)
|..+|++|+++|+.|+++||+++||||+|||.+++.+.+.+++++|+..+|.+++.+|+.++..... .....+.+...+
T Consensus 165 G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~ 244 (278)
T PLN03214 165 DRKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERALKLPSAARAATKALLREEFSAAWEAYYEEEAKGG 244 (278)
T ss_pred CHHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999976542 233445555666
Q ss_pred HHHhCChhHHHHHHHHhcCCCC
Q 020093 301 LIFYGTEEGSEGKTAFVERRRP 322 (331)
Q Consensus 301 ~~~~~s~d~~egi~aflekr~p 322 (331)
..++.++|++||+++|+||.+-
T Consensus 245 ~~~~~s~d~~egi~aflek~~~ 266 (278)
T PLN03214 245 WKMLSEPSIIKALGGVMERLSS 266 (278)
T ss_pred HHHhCCHHHHHHHHHHHHHHhh
Confidence 6788999999999999998543
No 64
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=9.9e-54 Score=390.84 Aligned_cols=243 Identities=35% Similarity=0.586 Sum_probs=219.3
Q ss_pred EEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhh
Q 020093 73 YEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRL 152 (331)
Q Consensus 73 ~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~ 152 (331)
|+. +++|++||||||+++|+||.+|+.+|.++|+.++.|+++++||++|.| ++||+|.|++++... ..........
T Consensus 2 ~~~--~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~-~~F~~G~Dl~~~~~~-~~~~~~~~~~ 77 (245)
T PF00378_consen 2 YEI--EDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGG-KAFCAGADLKEFLNS-DEEEAREFFR 77 (245)
T ss_dssp EEE--ETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEEST-SESBESB-HHHHHHH-HHHHHHHHHH
T ss_pred EEE--ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecc-cccccccchhhhhcc-ccccccccch
Confidence 677 899999999999999999999999999999999999999999999988 699999999987643 1111111223
Q ss_pred hHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHc
Q 020093 153 NVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFL 232 (331)
Q Consensus 153 ~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~lt 232 (331)
.+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+|++++++
T Consensus 78 ~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~ 157 (245)
T PF00378_consen 78 RFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLT 157 (245)
T ss_dssp HHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeecccccccccc
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCChhHHH
Q 020093 233 ARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTEEGSE 311 (331)
Q Consensus 233 G~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~e 311 (331)
|++++|+||+++||||+|+|+++|.+.+.+++++++..++.+++.+|+.++..... .......+...+..++.++|++|
T Consensus 158 g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 237 (245)
T PF00378_consen 158 GEPISAEEALELGLVDEVVPDEELDEEALELAKRLAAKPPSALRATKKALNRALEQSLEEALEFEQDLFAECFKSEDFQE 237 (245)
T ss_dssp TCEEEHHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred cccchhHHHHhhcceeEEcCchhhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999986443 33445666777888999999999
Q ss_pred HHHHHhcC
Q 020093 312 GKTAFVER 319 (331)
Q Consensus 312 gi~aflek 319 (331)
++++|+||
T Consensus 238 ~~~~f~eK 245 (245)
T PF00378_consen 238 GIAAFLEK 245 (245)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhCc
Confidence 99999998
No 65
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=2.2e-52 Score=382.84 Aligned_cols=244 Identities=23% Similarity=0.296 Sum_probs=218.1
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
.+..+.+++ +++|++|+||||+++|+||.+|+.+|.+++++++.|+++|+|||+|.| ++||+|+|++++..... ..
T Consensus 3 ~~~~~~~~~--~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~-~~ 78 (249)
T PRK07110 3 MKVVELREV--EEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYP-NYFATGGTQEGLLSLQT-GK 78 (249)
T ss_pred CCceEEEEe--eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCeeCCcChHHHhhccc-hh
Confidence 456788998 899999999999999999999999999999999999999999999999 69999999988643211 11
Q ss_pred hhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHH
Q 020093 147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (331)
Q Consensus 147 ~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a 226 (331)
..+ ...+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+|
T Consensus 79 ~~~---~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a 155 (249)
T PRK07110 79 GTF---TEANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALG 155 (249)
T ss_pred hhH---hhHHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHH
Confidence 111 11467888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhC
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYG 305 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~ 305 (331)
++++++|++++++||+++||||+|++++++.+++.+++++|++.||.+++.+|+.++..... .....+.+...+..++.
T Consensus 156 ~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~ 235 (249)
T PRK07110 156 QEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLAEKPRHSLVLLKDHLVADRRRRLPEVIEQEVAMHEKTFH 235 (249)
T ss_pred HHHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999876543 33444566667788899
Q ss_pred ChhHHHHHHHHh
Q 020093 306 TEEGSEGKTAFV 317 (331)
Q Consensus 306 s~d~~egi~afl 317 (331)
++|.+||+++..
T Consensus 236 ~~~~~egi~~~~ 247 (249)
T PRK07110 236 QPEVKRRIESLY 247 (249)
T ss_pred CHhHHHHHHHhc
Confidence 999999998763
No 66
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.5e-52 Score=383.06 Aligned_cols=247 Identities=29% Similarity=0.425 Sum_probs=214.4
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchh
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (331)
++.|.+++ +++|++||||||+++|+||.+|+++|.++|++++.|+++++|||+|.| ++||+|+|++++...... .
T Consensus 3 ~~~v~~~~--~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~-~- 77 (258)
T PRK06190 3 EPILLVET--HDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGAD-PAFCAGLDLKELGGDGSA-Y- 77 (258)
T ss_pred CceEEEEe--eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCccCCcCHHHHhcccch-h-
Confidence 35688888 899999999999999999999999999999999999999999999998 699999999987532111 1
Q ss_pred hhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHH
Q 020093 148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR 227 (331)
Q Consensus 148 ~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~ 227 (331)
. ....+..++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|+
T Consensus 78 ~-~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~ 156 (258)
T PRK06190 78 G-AQDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRAR 156 (258)
T ss_pred h-HHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHHH
Confidence 1 112345678889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCC
Q 020093 228 EMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGT 306 (331)
Q Consensus 228 ~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s 306 (331)
+|+++|++++|+||+++||||+++|++++++++.+++++|+..||.+++.+|+.++...+. .....+.+......++.+
T Consensus 157 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s 236 (258)
T PRK06190 157 RMSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNNPAAVRALKASYDDGAAAQTGDALALEAEAARAHNRS 236 (258)
T ss_pred HHHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999976543 334445566666667766
Q ss_pred ---hhHHHHHHHHhcCC
Q 020093 307 ---EEGSEGKTAFVERR 320 (331)
Q Consensus 307 ---~d~~egi~aflekr 320 (331)
+..++-.++|+.+.
T Consensus 237 ~~~~~~~~~~~~~~~~~ 253 (258)
T PRK06190 237 VSPDGIAARREAVMARG 253 (258)
T ss_pred CChHHHHHHHHHHHHhh
Confidence 44455555666553
No 67
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=4.1e-52 Score=401.45 Aligned_cols=254 Identities=18% Similarity=0.242 Sum_probs=218.5
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcc-h
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD-Y 146 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~-~ 146 (331)
..+|++++ +++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||+|.| ++||+|+|++++....... .
T Consensus 36 ~~~V~~e~--~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~G-kaFcAGgDl~~l~~~~~~~~~ 112 (401)
T PLN02157 36 DYQVLVEG--SGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSG-RAFCAGGDIVSLYHLRKRGSP 112 (401)
T ss_pred CCceEEEE--ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCC-CCccCCcCHHHHHhhccccch
Confidence 35688888 899999999999999999999999999999999999999999999999 6999999999875321111 1
Q ss_pred hhhh--hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHH
Q 020093 147 ENFG--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224 (331)
Q Consensus 147 ~~~~--~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 224 (331)
.... ....+.+...|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.
T Consensus 113 ~~~~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~- 191 (401)
T PLN02157 113 DAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGR- 191 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhH-
Confidence 1111 1123456678999999999999999999999999999999999999999999999999999999999999996
Q ss_pred HHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCchhHHHHHHHHHHHHh
Q 020093 225 KAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFY 304 (331)
Q Consensus 225 ~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~ 304 (331)
.+++|++||+.++|+||+++||||++||++++ +++.+++++++..+|.++..+|+.++............+......++
T Consensus 192 ~a~~L~LTG~~i~A~eA~~~GLv~~vVp~~~l-~~~~~~~~~i~~~~p~av~~~k~~~~~~~~~~~~~l~~~~~~i~~~f 270 (401)
T PLN02157 192 LGEYLGLTGLKLSGAEMLACGLATHYIRSEEI-PVMEEQLKKLLTDDPSVVESCLEKCAEVAHPEKTGVIRRIDLLEKCF 270 (401)
T ss_pred HHHHHHHcCCcCCHHHHHHcCCceEEeCHhHH-HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHh
Confidence 89999999999999999999999999999998 67789999999999999999999998653212222333455677788
Q ss_pred CChhHHHHHHHH---hcCCCCCCCC
Q 020093 305 GTEEGSEGKTAF---VERRRPDFLK 326 (331)
Q Consensus 305 ~s~d~~egi~af---lekr~p~f~~ 326 (331)
.++|.+|++++| .+||.|+|-.
T Consensus 271 ~~~d~~ei~~al~~~~~kr~~~wa~ 295 (401)
T PLN02157 271 SHDTVEEIIDSLEIEAGRRKDTWCI 295 (401)
T ss_pred cCCCHHHHHHHHHhhhcccchHHHH
Confidence 999999999999 8888898843
No 68
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=3.3e-52 Score=416.37 Aligned_cols=263 Identities=16% Similarity=0.127 Sum_probs=225.1
Q ss_pred CCCcccEEEEEeeCCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHhccc-CCCeeEEEEEeCCCCcee
Q 020093 65 GTEFTDIIYEKAVGEGIAKITINRPDRR-------------NAFRPHTVKELIRAFNDARD-DSSVGVIILTGKGTEAFC 130 (331)
Q Consensus 65 ~~~~~~v~~~~~~~~~v~~ItLnrp~~~-------------Nal~~~~~~eL~~al~~~~~-d~~v~~vVl~g~g~~~Fc 130 (331)
.-.|+++.++...+++|++||||||+++ |+||.+|+.+|.+++++++. |++||+|||||.|+++||
T Consensus 256 ~~~~~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~ 335 (550)
T PRK08184 256 GLRYRHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAV 335 (550)
T ss_pred ceeeEEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEE
Confidence 4456666665533789999999999998 68999999999999999986 799999999999844899
Q ss_pred ccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEc-Cccccch-hhhhhcccEEEEe-------CCceeecC
Q 020093 131 SGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA-GYAVGGG-HVLHMVCDLTIAA-------DNAIFGQT 201 (331)
Q Consensus 131 aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~-G~a~GgG-~~Lal~cD~~ia~-------~~a~f~~p 201 (331)
+|+|++............. ......++.+|..+||||||+|| |+|+||| ++|+++||+|||+ ++++|++|
T Consensus 336 aG~Dl~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~p 414 (550)
T PRK08184 336 LAADATLLAHKDHWLVRET-RGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLS 414 (550)
T ss_pred eCCChhhhcccchHHHHHH-HHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECc
Confidence 9999874321110000111 11234567789999999999997 9999999 9999999999999 99999999
Q ss_pred CCCccCCCCchHHHHHHHh-hCHHHHHHH--HHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHH
Q 020093 202 GPKVGSFDAGYGSSIMSRL-VGPKKAREM--WFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVL 278 (331)
Q Consensus 202 e~~~Gl~p~~g~~~~L~r~-vG~~~a~~l--~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~ 278 (331)
|+++|++|++|++++|+|+ +|..+|+++ +++|++++|+||++|||||+++|++++++++.++|++|+..||.+++.+
T Consensus 415 e~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~p~a~~~~ 494 (550)
T PRK08184 415 ALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIALEERASLSPDALTGM 494 (550)
T ss_pred cccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999999999998 699999997 5899999999999999999999999999999999999999999999999
Q ss_pred HHHHHccccC-chhH-HHHHHHHHHHHhCChhHHH---HHHHHhcCCCCCCCCCC
Q 020093 279 KSALNAVDDG-HAGL-QTLGGDATLIFYGTEEGSE---GKTAFVERRRPDFLKFP 328 (331)
Q Consensus 279 K~~l~~~~~~-~~~~-~~~~~~~~~~~~~s~d~~e---gi~aflekr~p~f~~~~ 328 (331)
|++++..... .... ...|...+..+++++|.+| |+++|+|||+|+|++..
T Consensus 495 K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~~~f~~~~ 549 (550)
T PRK08184 495 EANLRFAGPETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYGTGQKAQFDWNR 549 (550)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhccCCCCCCCCCC
Confidence 9999987643 3333 5666777888899999999 99999999999998753
No 69
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=8.5e-52 Score=412.19 Aligned_cols=261 Identities=15% Similarity=0.132 Sum_probs=222.6
Q ss_pred CCCcccEEEEEeeCCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHhcc-cCCCeeEEEEEeCCCCc-e
Q 020093 65 GTEFTDIIYEKAVGEGIAKITINRPDRR-------------NAFRPHTVKELIRAFNDAR-DDSSVGVIILTGKGTEA-F 129 (331)
Q Consensus 65 ~~~~~~v~~~~~~~~~v~~ItLnrp~~~-------------Nal~~~~~~eL~~al~~~~-~d~~v~~vVl~g~g~~~-F 129 (331)
...|.+|.+....+++|++||||||+++ |+|+.+|+.+|.+++.+++ +|++||+|||||.| +. |
T Consensus 252 ~~~~~~~~v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G-~~~F 330 (546)
T TIGR03222 252 GVRYPTVDVAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQG-DAEL 330 (546)
T ss_pred CcceeeEEEEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCC-CCce
Confidence 4445554443322899999999999999 9999999999999999998 56999999999999 46 9
Q ss_pred eccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEE-cCccccch-hhhhhcccEEEE-------eCCceeec
Q 020093 130 CSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV-AGYAVGGG-HVLHMVCDLTIA-------ADNAIFGQ 200 (331)
Q Consensus 130 caG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav-~G~a~GgG-~~Lal~cD~~ia-------~~~a~f~~ 200 (331)
|+|+|++............. ......++.+|..+||||||+| ||+|+||| ++|+++||+||+ +++++|++
T Consensus 331 ~aG~Dl~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~ 409 (546)
T TIGR03222 331 VLAADALLEAHKDHWFVRET-IGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITL 409 (546)
T ss_pred ecCcCccccccccchhHHHH-HHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeC
Confidence 99999984321111000111 1112457788999999999999 89999999 999999999999 89999999
Q ss_pred CCCCccCCCCchHHHHHHHhh-CHHHH--HHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHH
Q 020093 201 TGPKVGSFDAGYGSSIMSRLV-GPKKA--REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRV 277 (331)
Q Consensus 201 pe~~~Gl~p~~g~~~~L~r~v-G~~~a--~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~ 277 (331)
||+++|++|++|++++|++++ |..++ ++++++|+.++|+||++||||++|+|++++++++.++|++|++.||.+++.
T Consensus 410 ~e~~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~ 489 (546)
T TIGR03222 410 SELNFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRIALEERASFSPDALTG 489 (546)
T ss_pred CccccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999999999998 99999 559999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccccC-chhH-HHHHHHHHHHHhCChhHHH---HHHHHhcCCCCCCCCC
Q 020093 278 LKSALNAVDDG-HAGL-QTLGGDATLIFYGTEEGSE---GKTAFVERRRPDFLKF 327 (331)
Q Consensus 278 ~K~~l~~~~~~-~~~~-~~~~~~~~~~~~~s~d~~e---gi~aflekr~p~f~~~ 327 (331)
+|+.++..... .... ...|...+..++.++|.+| |+++|+|||+|+|+-.
T Consensus 490 ~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~p~f~~~ 544 (546)
T TIGR03222 490 LEANLRFAGPETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYGSGKKAQFDME 544 (546)
T ss_pred HHHHHhhcCCcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHccCCCCCCCcc
Confidence 99999887543 3333 5667777888899999999 9999999999999743
No 70
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=1.9e-51 Score=353.61 Aligned_cols=258 Identities=31% Similarity=0.479 Sum_probs=228.4
Q ss_pred ccEEEEEe--eCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch
Q 020093 69 TDIIYEKA--VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 69 ~~v~~~~~--~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
.+|.+++. .+.||.+|-+|||.++|+|+.-|+++|.++|+++..|+.+|+|+|++.-+..||+|.||++.......+.
T Consensus 27 ~Ev~v~~L~g~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev 106 (291)
T KOG1679|consen 27 NEVFVRRLTGKDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEV 106 (291)
T ss_pred ceeeeeeccCCCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHH
Confidence 34555543 2678999999999999999999999999999999999999999999988889999999999765543322
Q ss_pred hhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHH
Q 020093 147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (331)
Q Consensus 147 ~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a 226 (331)
..+ -..+..++..|.++|.||||+|+|.|+|||++|+++||+|||+++++||++|++++++|++||+++|+|++|.+.|
T Consensus 107 ~~f-V~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~ala 185 (291)
T KOG1679|consen 107 TRF-VNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGVALA 185 (291)
T ss_pred HHH-HHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhHHHH
Confidence 222 2245678889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCCC----cHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHH
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPLE----KLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATL 301 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~----~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~ 301 (331)
+||++|++.+++.||..+||||++|... ...+.+.++|++|..+.|.++++.|.++|...+. .......|.....
T Consensus 186 KELIftarvl~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~gPiavr~aKlAIn~G~evdiasgl~iEe~CYa 265 (291)
T KOG1679|consen 186 KELIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQGPIAVRLAKLAINLGMEVDIASGLSIEEMCYA 265 (291)
T ss_pred HhHhhhheeccchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCCchhhhHHHHHhccCceecccccccHHHHHHH
Confidence 9999999999999999999999999865 5677899999999999999999999999987652 3334456666777
Q ss_pred HHhCChhHHHHHHHHhcCCCCCCCCC
Q 020093 302 IFYGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 302 ~~~~s~d~~egi~aflekr~p~f~~~ 327 (331)
+...+.|..||+.+|.|||+|.|++.
T Consensus 266 q~i~t~drLeglaaf~ekr~p~y~G~ 291 (291)
T KOG1679|consen 266 QIIPTKDRLEGLAAFKEKRKPEYKGE 291 (291)
T ss_pred hcCcHHHHHHHHHHHHhhcCCCcCCC
Confidence 77889999999999999999999874
No 71
>PRK05869 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.5e-50 Score=364.48 Aligned_cols=206 Identities=28% Similarity=0.500 Sum_probs=187.6
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHH
Q 020093 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL 157 (331)
Q Consensus 78 ~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l 157 (331)
+++|++||||||++ |+||.+|+.+|.+++++++.|+++++|||||.| ++||+|+|++++....... .......+.++
T Consensus 15 ~~~i~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~-~~~~~~~~~~~ 91 (222)
T PRK05869 15 DAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGGH-EIFSAGDDMPELRTLSAQE-ADTAARVRQQA 91 (222)
T ss_pred cCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcCcCcCHHHHhccChhh-HHHHHHHHHHH
Confidence 48899999999986 999999999999999999999999999999998 6999999999875322111 11111123568
Q ss_pred HHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCC
Q 020093 158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYT 237 (331)
Q Consensus 158 ~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~ 237 (331)
+.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++.+|++++|..++++++++|++++
T Consensus 92 ~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~ 171 (222)
T PRK05869 92 VDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFD 171 (222)
T ss_pred HHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccc
Q 020093 238 AEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVD 286 (331)
Q Consensus 238 a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~ 286 (331)
|+||+++||||+++|++++.+++.+++++|+..+|.+++.+|+.++..+
T Consensus 172 a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~~~~~~ 220 (222)
T PRK05869 172 AEEALALGLIDEMVAPDDVYDAAAAWARRFLDGPPHALAAAKAGISDVY 220 (222)
T ss_pred HHHHHHCCCCCEeeCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999998754
No 72
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.9e-49 Score=373.06 Aligned_cols=217 Identities=29% Similarity=0.412 Sum_probs=190.6
Q ss_pred CCCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCc
Q 020093 65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA 144 (331)
Q Consensus 65 ~~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~ 144 (331)
...|++|.++. +++|++||||||+++|+||.+|+.+|.++|++++.|++|++|||+|.| ++||+|+||+++......
T Consensus 6 ~~~~~~v~~e~--~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G-~~FcaG~Dl~~~~~~~~~ 82 (302)
T PRK08272 6 LDNLKTMTYEV--TGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAG-KGFCAGYDLSAYAEGSSS 82 (302)
T ss_pred cCCCCeEEEEe--ECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CCcccCcCHHHHhhcccc
Confidence 45678899999 899999999999999999999999999999999999999999999999 699999999987432110
Q ss_pred c---h-----------------hh----hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeec
Q 020093 145 D---Y-----------------EN----FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQ 200 (331)
Q Consensus 145 ~---~-----------------~~----~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~ 200 (331)
. . .. .......+++..|.++||||||+|||+|+|||++|+++||+|||+++++|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~ 162 (302)
T PRK08272 83 GGGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGY 162 (302)
T ss_pred cccccccccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecC
Confidence 0 0 00 0011234567788999999999999999999999999999999999999999
Q ss_pred CCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHH
Q 020093 201 TGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKS 280 (331)
Q Consensus 201 pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~ 280 (331)
||+++|.+|+. ..+++++|.++|++|++||++|+|+||+++||||++||+++|.+++.++|++|+..||.+++.+|+
T Consensus 163 pe~~~gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~~~~a~~~~K~ 239 (302)
T PRK08272 163 PPTRVWGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIAAVPVNQLAMVKL 239 (302)
T ss_pred cchhcccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99998656642 357889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcccc
Q 020093 281 ALNAVDD 287 (331)
Q Consensus 281 ~l~~~~~ 287 (331)
+++..++
T Consensus 240 ~l~~~~~ 246 (302)
T PRK08272 240 AVNSALL 246 (302)
T ss_pred HHHHHHH
Confidence 9998654
No 73
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.4e-49 Score=368.75 Aligned_cols=237 Identities=35% Similarity=0.491 Sum_probs=199.9
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCC---
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY--- 143 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~--- 143 (331)
+++.|.++. +++|++||||||+++|+||.+|+.+|.+++++++.|++|++|||||.| ++||+|+|++++.....
T Consensus 2 ~~~~v~~~~--~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G-~~FcaG~Dl~~~~~~~~~~~ 78 (288)
T PRK08290 2 EYEYVRYEV--AGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAG-KHFSAGHDLGSGTPGRDRDP 78 (288)
T ss_pred CCceEEEEe--eCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CccccCCCcccccccccccc
Confidence 356789998 899999999999999999999999999999999999999999999999 69999999997632110
Q ss_pred ---------------cchh-hhh--hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCc
Q 020093 144 ---------------ADYE-NFG--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKV 205 (331)
Q Consensus 144 ---------------~~~~-~~~--~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~ 205 (331)
.... ... ...+.+++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~l 158 (288)
T PRK08290 79 GPDQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRM 158 (288)
T ss_pred ccccccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCccccc
Confidence 0000 010 0123456678899999999999999999999999999999999999999999999
Q ss_pred cCCCCchHHHHHHHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHcc
Q 020093 206 GSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAV 285 (331)
Q Consensus 206 Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~ 285 (331)
|+ |+ .+++++++++|+.++++|++||+.++|+||+++||||++||.++|++.+.+++++|++.||.+++.+|+.++..
T Consensus 159 Gl-~~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~ 236 (288)
T PRK08290 159 GI-PG-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAMPPFGLRLTKRAVNQT 236 (288)
T ss_pred Cc-Cc-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 98 44 45778899999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred ccC--chhHHHHHHHHHHHHh-CChh
Q 020093 286 DDG--HAGLQTLGGDATLIFY-GTEE 308 (331)
Q Consensus 286 ~~~--~~~~~~~~~~~~~~~~-~s~d 308 (331)
.+. .......+.......+ ++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (288)
T PRK08290 237 LDAQGFRAALDAVFDLHQLGHAHNAE 262 (288)
T ss_pred HhhccHHHHHHHHHHHHHHccccchh
Confidence 542 3344444544444444 4444
No 74
>PRK08788 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=3.8e-48 Score=360.28 Aligned_cols=251 Identities=22% Similarity=0.206 Sum_probs=196.7
Q ss_pred CCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhccc-----CCCeeEEEEEeCCCCceeccccccchhc
Q 020093 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARD-----DSSVGVIILTGKGTEAFCSGGDQALRTR 140 (331)
Q Consensus 66 ~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~-----d~~v~~vVl~g~g~~~FcaG~Dl~~~~~ 140 (331)
..|+++.++...+++|++|||| |+++|+||.+|+.+|.+++++++. |++|++|||+|.++++||+|+|++++..
T Consensus 12 ~~~~~~~i~~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~ 90 (287)
T PRK08788 12 GELSQLRVYYEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAE 90 (287)
T ss_pred cccCceEEEEEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhh
Confidence 3445544444338999999996 999999999999999999999998 8999999999994479999999998642
Q ss_pred CCC-cchhhhhh--hhHHHHHHHHH---cCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHH
Q 020093 141 DGY-ADYENFGR--LNVLDLQVQIR---RLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGS 214 (331)
Q Consensus 141 ~~~-~~~~~~~~--~~~~~l~~~l~---~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~ 214 (331)
... ........ ..+.+.+..+. .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~ 170 (287)
T PRK08788 91 LIRAGDRDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAY 170 (287)
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHH
Confidence 101 11111100 11122233333 7999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHH
Q 020093 215 SIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQ 293 (331)
Q Consensus 215 ~~L~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~ 293 (331)
++|++++|..+|++|+++|+.++|+||++|||||+++|++++.+++.+++++|+.. |.+...+|+..+...+. ..+..
T Consensus 171 ~~l~~~vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia~~-~~~~~a~k~~~~~~~~~~~~~~~ 249 (287)
T PRK08788 171 SFLARRVGPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSKRK-LNGWRAMLRARRRVNPLSLEELM 249 (287)
T ss_pred HHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHhcC-ccHHHHHHHHHHhhccCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987 66666666666554432 22333
Q ss_pred HHHHHHHHHHhC-ChhHHHHHHHHhc
Q 020093 294 TLGGDATLIFYG-TEEGSEGKTAFVE 318 (331)
Q Consensus 294 ~~~~~~~~~~~~-s~d~~egi~afle 318 (331)
+.+......+.. .+...+-|..|..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (287)
T PRK08788 250 DITEIWVDAALQLEEKDLRTMERLVR 275 (287)
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHH
Confidence 334333333333 3445677777764
No 75
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=2e-47 Score=368.75 Aligned_cols=184 Identities=21% Similarity=0.286 Sum_probs=163.9
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCc-chh
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA-DYE 147 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~-~~~ 147 (331)
+.|.++. .+++++||||||+++|+||.+|+.+|.++|+.++.|++|++|||+|.| ++||+|+|++++...... ...
T Consensus 42 ~~v~~e~--~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~G-kaFcAGgDl~~l~~~~~~~~~~ 118 (407)
T PLN02851 42 DQVLVEG--RAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSG-RAFCSGADVVSLYHLINEGNVE 118 (407)
T ss_pred CCeEEEE--ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCccCCcCHHHHHhhccccchH
Confidence 5688998 899999999999999999999999999999999999999999999999 799999999987532111 111
Q ss_pred hh--hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHH
Q 020093 148 NF--GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK 225 (331)
Q Consensus 148 ~~--~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~ 225 (331)
.. .....+.+...|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+.|++++|+|++|. .
T Consensus 119 ~~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~-~ 197 (407)
T PLN02851 119 ECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGY-L 197 (407)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCH-H
Confidence 11 11234567778899999999999999999999999999999999999999999999999999999999999998 4
Q ss_pred HHHHHHcCCCCCHHHHHhcCcccEecCCCcH
Q 020093 226 AREMWFLARFYTAEEAEKMGLVNTVVPLEKL 256 (331)
Q Consensus 226 a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l 256 (331)
+++|++||++++|+||+++||+|+++|++++
T Consensus 198 g~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l 228 (407)
T PLN02851 198 GEYLALTGQKLNGVEMIACGLATHYCLNARL 228 (407)
T ss_pred HHHHHHhCCcCCHHHHHHCCCceeecCHhhH
Confidence 9999999999999999999999999987765
No 76
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=5.4e-48 Score=399.44 Aligned_cols=251 Identities=23% Similarity=0.294 Sum_probs=214.2
Q ss_pred cEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhh
Q 020093 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF 149 (331)
Q Consensus 70 ~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~ 149 (331)
++.++.. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||+| ++||+|+|++++...........
T Consensus 7 ~i~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~~~~~ 84 (715)
T PRK11730 7 TLQVDWL-EDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAK-DAFIVGADITEFLSLFAAPEEEL 84 (715)
T ss_pred eEEEEEc-CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCC-CccccCcCHHHHhhhccCCHHHH
Confidence 4667631 789999999999999999999999999999999999999999999999 69999999998753111111111
Q ss_pred --hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHH
Q 020093 150 --GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR 227 (331)
Q Consensus 150 --~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~ 227 (331)
......+++.+|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+|+
T Consensus 85 ~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~ 164 (715)
T PRK11730 85 SQWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNAL 164 (715)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHH
Confidence 111245677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhcc------------CHH---------HHHHHHH------
Q 020093 228 EMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRN------------SPT---------AIRVLKS------ 280 (331)
Q Consensus 228 ~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~------------~~~---------a~~~~K~------ 280 (331)
+|+++|++++|+||+++||||+|||++++.+++.++|++|+.. +|. +++.+|+
T Consensus 165 ~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~p~a~~~~~~~~~~~~~k~~~~~~~ 244 (715)
T PRK11730 165 EWIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLDWKARRQPKLEPLKLSKIEAMMSFTTAKGMVAQKA 244 (715)
T ss_pred HHHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCccccccCcccccccccchhHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999965 455 4477775
Q ss_pred ------------HHHcccc-CchhHHHHHHHHHHHHhCChhHHHHHHHHhcCCCC
Q 020093 281 ------------ALNAVDD-GHAGLQTLGGDATLIFYGTEEGSEGKTAFVERRRP 322 (331)
Q Consensus 281 ------------~l~~~~~-~~~~~~~~~~~~~~~~~~s~d~~egi~aflekr~p 322 (331)
+++...+ ......+.|.+.+..++.++|++|++++|+++|.-
T Consensus 245 ~~~~pa~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~d~~egi~aF~~~~~~ 299 (715)
T PRK11730 245 GKHYPAPMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTNVARALVGIFLNDQYV 299 (715)
T ss_pred ccCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 3454433 23344566777888899999999999999998654
No 77
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=3e-47 Score=358.42 Aligned_cols=204 Identities=28% Similarity=0.430 Sum_probs=181.1
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhh--hhhhHHHHH
Q 020093 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF--GRLNVLDLQ 158 (331)
Q Consensus 81 v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~--~~~~~~~l~ 158 (331)
+++||||||+++|+||.+|+.+|.++++.++.|++|++|||||.|+++||+|+|++++........... ....+.+++
T Consensus 38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~ 117 (360)
T TIGR03200 38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMV 117 (360)
T ss_pred EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHH
Confidence 556999999999999999999999999999999999999999999669999999998753211111111 111234677
Q ss_pred HHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCCH
Q 020093 159 VQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTA 238 (331)
Q Consensus 159 ~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~a 238 (331)
..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++++++|++++|
T Consensus 118 ~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~sA 197 (360)
T TIGR03200 118 SAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWSA 197 (360)
T ss_pred HHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCcH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcccEecCCCcH------------HHHHHHHHHHHhccCHH--HHHHHHHHHHc
Q 020093 239 EEAEKMGLVNTVVPLEKL------------EQETIKWSREILRNSPT--AIRVLKSALNA 284 (331)
Q Consensus 239 ~eA~~~GLv~~vv~~~~l------------~~~a~~~a~~la~~~~~--a~~~~K~~l~~ 284 (331)
+||+++||||+|+|++++ ++.+.++++.+...+.. ++++.|.+++.
T Consensus 198 ~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 257 (360)
T TIGR03200 198 HKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAGKELIKQ 257 (360)
T ss_pred HHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCCCcchhHHHHHHHHHhc
Confidence 999999999999999888 78888889888888877 88888888877
No 78
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=1.1e-46 Score=389.65 Aligned_cols=249 Identities=21% Similarity=0.327 Sum_probs=213.6
Q ss_pred cEEEEEeeCCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 70 DIIYEKAVGEGIAKITINRP-DRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 70 ~v~~~~~~~~~v~~ItLnrp-~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
++.+++. +++|++|||||| +++|+||.+|+.+|.+++++++.|+++|+|||+|.|+++||+|+|++++..........
T Consensus 6 ~~~~~~~-~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~ 84 (708)
T PRK11154 6 AFTLNVR-EDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAE 84 (708)
T ss_pred eEEEEEc-CCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHH
Confidence 3556653 689999999999 69999999999999999999999999999999997657999999999874321111111
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCC--ceeecCCCCccCCCCchHHHHHHHhhCHHHH
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN--AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a 226 (331)
........++.+|.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|++++|..+|
T Consensus 85 ~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A 164 (708)
T PRK11154 85 ALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTA 164 (708)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHHH
Confidence 11112346788999999999999999999999999999999999987 4999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHH-------------HhccCHH--------------------
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSRE-------------ILRNSPT-------------------- 273 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~-------------la~~~~~-------------------- 273 (331)
++|+++|++++|+||+++||||++++++++.+++.++|++ ++..+|.
T Consensus 165 ~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~ 244 (708)
T PRK11154 165 LDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPARRPLPVRERLLEGNPLGRALLFKQARKKTLAKTQGN 244 (708)
T ss_pred HHHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhcCCccCcCCchhhhcccCchhHHHHHHHHHHHHHHhcccC
Confidence 9999999999999999999999999999999999999998 5666664
Q ss_pred --HHHHHHHHHHccccC-chhHHHHHHHHHHHHhCChhHHHHHHHHhcC
Q 020093 274 --AIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTEEGSEGKTAFVER 319 (331)
Q Consensus 274 --a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~aflek 319 (331)
+++.+|++++..... .......|.+.+..++.|+|.+|++++|+.+
T Consensus 245 ~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~aF~~~ 293 (708)
T PRK11154 245 YPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFAT 293 (708)
T ss_pred ChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 688899999886543 3445567778888899999999999999954
No 79
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-46 Score=341.08 Aligned_cols=210 Identities=23% Similarity=0.289 Sum_probs=187.7
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
+.|.++. +++|++|||||| ++|+||.+|+.+|.++++.++ +++++|||+|.| ++||+|+|++++... ......
T Consensus 3 ~~i~~~~--~~~v~~itln~~-~~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g-~~F~~G~Dl~~~~~~-~~~~~~ 75 (229)
T PRK06213 3 ELVSYTL--EDGVATITLDDG-KVNALSPAMIDALNAALDQAE--DDRAVVVITGQP-GIFSGGFDLKVMTSG-AQAAIA 75 (229)
T ss_pred ceEEEEe--cCCEEEEEeCCC-CCCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCC-CceEcCcCHHHHhcc-hHhHHH
Confidence 3588888 899999999998 469999999999999999988 467999999999 699999999987532 111111
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCC-ceeecCCCCccCCCCchHHHHHHHhhCHHHHH
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR 227 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~ 227 (331)
. .....+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|++|++++..++++++|...++
T Consensus 76 ~-~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a~ 154 (229)
T PRK06213 76 L-LTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAFQ 154 (229)
T ss_pred H-HHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHHH
Confidence 1 122456788899999999999999999999999999999999999 99999999999988888888899999999999
Q ss_pred HHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccc
Q 020093 228 EMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVD 286 (331)
Q Consensus 228 ~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~ 286 (331)
+++++|++++|+||+++||||+|+|++++.+.+.+++++|++.+|.+++.+|+.++...
T Consensus 155 ~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~ 213 (229)
T PRK06213 155 RAVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARELAGLNMGAHAATKLKVRAAA 213 (229)
T ss_pred HHHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998753
No 80
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=1e-47 Score=333.40 Aligned_cols=260 Identities=26% Similarity=0.350 Sum_probs=217.4
Q ss_pred CCcccEEEEEe-eCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCC-
Q 020093 66 TEFTDIIYEKA-VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY- 143 (331)
Q Consensus 66 ~~~~~v~~~~~-~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~- 143 (331)
..|+.+.+.+. .+.-|.++.||||.|+|+||..|+.|+.++|+.+.+||++|+|||+|+| |+||+|+|+..+.....
T Consensus 16 ~s~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~G-KhFcaGIDl~~~~~~~~~ 94 (292)
T KOG1681|consen 16 HSYKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAG-KHFCAGIDLNDMASDRIL 94 (292)
T ss_pred cccceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCC-cceecccCcchhhhhhcc
Confidence 34554555431 1566999999999999999999999999999999999999999999999 79999999876532111
Q ss_pred -cchhhhh------h---hhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchH
Q 020093 144 -ADYENFG------R---LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYG 213 (331)
Q Consensus 144 -~~~~~~~------~---~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~ 213 (331)
...+... + ..+++.+..|.+||||||++|||+|+|||+.|..+||+|+|+++|.|+.-|+.+|+..+.|.
T Consensus 95 ~~~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGT 174 (292)
T KOG1681|consen 95 QPEGDDVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGT 174 (292)
T ss_pred ccccchHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhh
Confidence 0111111 1 12456777899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhC-HHHHHHHHHcCCCCCHHHHHhcCcccEecCC-CcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCch-
Q 020093 214 SSIMSRLVG-PKKAREMWFLARFYTAEEAEKMGLVNTVVPL-EKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHA- 290 (331)
Q Consensus 214 ~~~L~r~vG-~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~- 290 (331)
..+||..|| .+.++++.+|++.|+|.||++.|||.+|+|+ +++...+..+|+.|+.++|.+++.||..++...+...
T Consensus 175 L~RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KSpvaVqgTK~~L~ysrehsv~ 254 (292)
T KOG1681|consen 175 LNRLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASKSPVAVQGTKENLLYSREHSVE 254 (292)
T ss_pred HhhhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccCCceeeechHHHHHHHhhhhhh
Confidence 999999999 8899999999999999999999999999987 7799999999999999999999999999998776432
Q ss_pred hHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCC-CCC
Q 020093 291 GLQTLGGDATLIFYGTEEGSEGKTAFVERRRPD-FLK 326 (331)
Q Consensus 291 ~~~~~~~~~~~~~~~s~d~~egi~aflekr~p~-f~~ 326 (331)
+............+.++|..+++.|-++|++|. |.+
T Consensus 255 ~sLnyvatwNms~L~s~Dl~~av~a~m~k~k~~tfsk 291 (292)
T KOG1681|consen 255 ESLNYVATWNMSMLLSDDLVKAVMAQMEKLKTVTFSK 291 (292)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccc
Confidence 222222222333456899999999999999877 764
No 81
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=100.00 E-value=3.5e-46 Score=359.02 Aligned_cols=213 Identities=25% Similarity=0.363 Sum_probs=187.9
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch-
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY- 146 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~- 146 (331)
...|.++. +++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||+|.| ++||+|+|++++........
T Consensus 8 ~~~v~~~~--~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G-~~FcAGgDl~~l~~~~~~~~~ 84 (381)
T PLN02988 8 QSQVLVEE--KSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHG-RAFCAGGDVAAVVRDIEQGNW 84 (381)
T ss_pred CCceEEEE--ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCC-CCcccCcCHHHHHhhhcccch
Confidence 34688888 899999999999999999999999999999999999999999999999 69999999998742211110
Q ss_pred h-hhh-hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHH
Q 020093 147 E-NFG-RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224 (331)
Q Consensus 147 ~-~~~-~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 224 (331)
. ... ....+.+...|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.
T Consensus 85 ~~~~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~- 163 (381)
T PLN02988 85 RLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF- 163 (381)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHH-
Confidence 0 000 1112345567899999999999999999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHcc
Q 020093 225 KAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAV 285 (331)
Q Consensus 225 ~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~ 285 (331)
.+++|++||++++|+||+++||||++||++++.+.+.+++ +++..+|.++..+|+.++..
T Consensus 164 ~~~~l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la-~~~~~~p~~~~~~~~~~~~~ 223 (381)
T PLN02988 164 FGEYVGLTGARLDGAEMLACGLATHFVPSTRLTALEADLC-RIGSNDPTFASTILDAYTQH 223 (381)
T ss_pred HHHHHHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHH-HhhccCHHHHHHHHHHhhcC
Confidence 6999999999999999999999999999999999999998 88888999999999988753
No 82
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=2.8e-45 Score=378.41 Aligned_cols=241 Identities=22% Similarity=0.350 Sum_probs=205.8
Q ss_pred CCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHhcccCCCeeEEEE-EeCCCCceeccccccchhcCCCcchhhhhhhhHH
Q 020093 78 GEGIAKITINRP-DRRNAFRPHTVKELIRAFNDARDDSSVGVIIL-TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVL 155 (331)
Q Consensus 78 ~~~v~~ItLnrp-~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl-~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~ 155 (331)
+++|++|||||| +++|+||.+|+.+|.++|++++.|++|++||| +|.| ++||+|+|++++.................
T Consensus 8 ~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g-~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~ 86 (699)
T TIGR02440 8 EDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKP-DNFIAGADISMLAACQTAGEAKALAQQGQ 86 (699)
T ss_pred CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-CceeeccCchhhhccCChhHHHHHHHHHH
Confidence 789999999999 79999999999999999999999999999987 5677 69999999998743211111111111245
Q ss_pred HHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCC--ceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcC
Q 020093 156 DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN--AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLA 233 (331)
Q Consensus 156 ~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG 233 (331)
.++..|.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|+|++|..+|++|+++|
T Consensus 87 ~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~llltG 166 (699)
T TIGR02440 87 VLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTG 166 (699)
T ss_pred HHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHHHHcC
Confidence 6778899999999999999999999999999999999976 79999999999999999999999999999999999999
Q ss_pred CCCCHHHHHhcCcccEecCCCcHHHHHHHHHH-------------HHhccCHHHHH----------------------HH
Q 020093 234 RFYTAEEAEKMGLVNTVVPLEKLEQETIKWSR-------------EILRNSPTAIR----------------------VL 278 (331)
Q Consensus 234 ~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~-------------~la~~~~~a~~----------------------~~ 278 (331)
+.++|+||+++||||+++|++++.+++.++|+ +++..+|.+.+ .+
T Consensus 167 ~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~k~~~~~~~~~~~a~~~~ 246 (699)
T TIGR02440 167 KQLRAKQALKLGLVDDVVPQSILLDTAVEMALKGKPIRKPLSLQERLLEGTPLGRALLFDQAAKKTAKKTQGNYPAAERI 246 (699)
T ss_pred CcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhCCCCCCCccchhhhcccCchhHHHHHHHHHHHHHHhcccCChhHHHH
Confidence 99999999999999999999999999999998 67777777743 44
Q ss_pred HHHHHcccc-CchhHHHHHHHHHHHHhCChhHHHHHHHHhcC
Q 020093 279 KSALNAVDD-GHAGLQTLGGDATLIFYGTEEGSEGKTAFVER 319 (331)
Q Consensus 279 K~~l~~~~~-~~~~~~~~~~~~~~~~~~s~d~~egi~aflek 319 (331)
|+.++.... ......+.|.+.+..++.|+|.++++.+|+-.
T Consensus 247 ~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~~f~~~ 288 (699)
T TIGR02440 247 LDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFAT 288 (699)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 455666544 23445577888888999999999999999853
No 83
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=100.00 E-value=4.8e-45 Score=332.19 Aligned_cols=211 Identities=22% Similarity=0.326 Sum_probs=180.5
Q ss_pred EEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCee-EEEEEeCCCCceeccccccchhcCCCcchh-h
Q 020093 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVG-VIILTGKGTEAFCSGGDQALRTRDGYADYE-N 148 (331)
Q Consensus 71 v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~-~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~-~ 148 (331)
+.+++ +++|++|+||||++ |+|+.+|+.+|.+++++++.|++++ +||++|.| ++||+|+|++++......... .
T Consensus 2 ~~~~~--~~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g-~~FsaG~Dl~~~~~~~~~~~~~~ 77 (239)
T PLN02267 2 CTLEK--RGNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEG-KFFSNGFDLAWAQAAGSAPSRLH 77 (239)
T ss_pred ceeEe--cCCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCC-CceeCCcCHHHHhccccCHHHHH
Confidence 56777 89999999999986 9999999999999999999999875 77789988 599999999876421111111 1
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEe-CCceeecCCCCccCCCCchHHHHHHHhhCHHHH-
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA-DNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA- 226 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a- 226 (331)
.....+.+++..|.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++++++++.+|++++|..++
T Consensus 78 ~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~ 157 (239)
T PLN02267 78 LMVAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAAR 157 (239)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHH
Confidence 111234567888999999999999999999999999999999998 568999999999996344458899999999999
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCC-CcHHHHHHHHHHHHhcc--CHHHHHHHHHHHHcc
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPL-EKLEQETIKWSREILRN--SPTAIRVLKSALNAV 285 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~--~~~a~~~~K~~l~~~ 285 (331)
++|+++|++++|+||+++||||+++|+ +++.+.+.++|++|++. ++.++..+|+.++..
T Consensus 158 ~~llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~~~~~~~~~~~k~~~~~~ 219 (239)
T PLN02267 158 RDVLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAARKWNGEVYASIRKSLLPE 219 (239)
T ss_pred HHHHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHH
Confidence 699999999999999999999999985 68999999999999987 667899999998763
No 84
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=2e-43 Score=364.81 Aligned_cols=250 Identities=24% Similarity=0.309 Sum_probs=204.3
Q ss_pred cEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhh
Q 020093 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF 149 (331)
Q Consensus 70 ~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~ 149 (331)
.+.++.. +++|++||||||+++|+||.+|+.+|.+++++++.|+++++|||+|.| ++||+|+|++++...........
T Consensus 7 ~i~~~~~-~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~ 84 (714)
T TIGR02437 7 TIQVTAL-EDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGK-DAFIVGADITEFLGLFALPDAEL 84 (714)
T ss_pred eEEEEEc-cCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CccccCcCHHHHhhcccCCHHHH
Confidence 4667642 689999999999999999999999999999999999999999999999 69999999998753111111111
Q ss_pred -h-hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHH
Q 020093 150 -G-RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR 227 (331)
Q Consensus 150 -~-~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~ 227 (331)
. .....+++..|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|+
T Consensus 85 ~~~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~ 164 (714)
T TIGR02437 85 IQWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNAL 164 (714)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHH
Confidence 1 11235678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccC--------H----------HH---HHHHHHH-----
Q 020093 228 EMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNS--------P----------TA---IRVLKSA----- 281 (331)
Q Consensus 228 ~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~--------~----------~a---~~~~K~~----- 281 (331)
+|+++|++++|+||+++||||+++|.+++.+.+.++++++.... + .. .....+.
T Consensus 165 ~llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (714)
T TIGR02437 165 EWIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKLDWKAKRQPKLEPLKLSKIEAMMSFTTAKGMVAQVA 244 (714)
T ss_pred HHHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcCCcccccCCCCcccccccchHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999998754320 0 00 1111110
Q ss_pred -------------HHcccc-CchhHHHHHHHHHHHHhCChhHHHHHHHHhcCCC
Q 020093 282 -------------LNAVDD-GHAGLQTLGGDATLIFYGTEEGSEGKTAFVERRR 321 (331)
Q Consensus 282 -------------l~~~~~-~~~~~~~~~~~~~~~~~~s~d~~egi~aflekr~ 321 (331)
+....+ ........|.+.+..++.|++.+..+..|+.+|.
T Consensus 245 ~~~~pap~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~~l~~~ff~~r~ 298 (714)
T TIGR02437 245 GPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQY 298 (714)
T ss_pred cCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhHh
Confidence 111111 1234456788889999999999999999996543
No 85
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=5.9e-43 Score=310.16 Aligned_cols=252 Identities=26% Similarity=0.377 Sum_probs=224.2
Q ss_pred CCCcccEEEEEeeCCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCC
Q 020093 65 GTEFTDIIYEKAVGEGIAKITIN-RPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY 143 (331)
Q Consensus 65 ~~~~~~v~~~~~~~~~v~~ItLn-rp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~ 143 (331)
...+..+.+++ ++++.+|.+| ||++.|+|+.+++.++..+|..+.+|+++..+|++|.| ++||+|.|+..+.....
T Consensus 3 ~~~~~~~vv~~--~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G-~~f~sG~Df~~~~~~~~ 79 (266)
T KOG0016|consen 3 AMRYREIVVTR--ENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNG-SYFCSGLDFSPFAKALD 79 (266)
T ss_pred cccccceEEEe--cCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCc-cEEeeccccchhhhcCC
Confidence 34567899999 9999999999 99999999999999999999999999999999999999 69999999997754322
Q ss_pred cchhhh--hh----hhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHH
Q 020093 144 ADYENF--GR----LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIM 217 (331)
Q Consensus 144 ~~~~~~--~~----~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L 217 (331)
.+.... .. ..+..+...+..+|||+||.|||+|+|.|+.+.-.||+++|+|+++|..|++++|..|+|+.++.|
T Consensus 80 ~d~~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~ 159 (266)
T KOG0016|consen 80 DDANEESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTL 159 (266)
T ss_pred CcccccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeee
Confidence 111111 11 112236778899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHcccc-CchhHHHHH
Q 020093 218 SRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDD-GHAGLQTLG 296 (331)
Q Consensus 218 ~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~ 296 (331)
|+++|...|.||++.|++++|+||.+.|||+++++.+.+.++++..++++++.+|.+++..|++++.... ......+.|
T Consensus 160 p~imG~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l~p~sl~~~K~L~rs~~k~~l~~an~~E 239 (266)
T KOG0016|consen 160 PKIMGSASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKKIKQYSKLSPESLLGMKKLLRSNIKEELIKANEEE 239 (266)
T ss_pred hHhhchhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997542 334455778
Q ss_pred HHHHHHHhCChhHHHHHHHHhcC
Q 020093 297 GDATLIFYGTEEGSEGKTAFVER 319 (331)
Q Consensus 297 ~~~~~~~~~s~d~~egi~aflek 319 (331)
.......|.++|+.+.+.+|+.|
T Consensus 240 ~~~l~~~W~s~e~~~~~~~~~~~ 262 (266)
T KOG0016|consen 240 CNVLLKQWVSAECLARFKQYLSK 262 (266)
T ss_pred HHHHHhhccChHHHHHHHHHhcc
Confidence 88888999999999999999976
No 86
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=5.5e-42 Score=354.98 Aligned_cols=250 Identities=20% Similarity=0.296 Sum_probs=200.4
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHhcccCCCeeEE-EEEeCCCCceeccccccchhcCCCc
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVI-ILTGKGTEAFCSGGDQALRTRDGYA 144 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~-~~Nal~~~~~~eL~~al~~~~~d~~v~~v-Vl~g~g~~~FcaG~Dl~~~~~~~~~ 144 (331)
.++++.+++ +++|++||||||+ +.|+||.+|+.+|.+++++++.|++|++| |++|.| ++||+|+||+++......
T Consensus 11 ~~~~~~~~~--~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g-~~F~aG~Dl~~~~~~~~~ 87 (737)
T TIGR02441 11 ARTHRHYEV--KGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKP-GSFVAGADIQMIAACKTA 87 (737)
T ss_pred CCCeEEEEE--ECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCC-CcceeCcCHHHHhccCCh
Confidence 345688988 8999999999998 58999999999999999999999999965 579998 699999999987532111
Q ss_pred chhhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCC--ceeecCCCCccCCCCchHHHHHHHhhC
Q 020093 145 DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN--AIFGQTGPKVGSFDAGYGSSIMSRLVG 222 (331)
Q Consensus 145 ~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~L~r~vG 222 (331)
...........+++.+|.++||||||+|||+|+|||++|+++||||||+++ ++|++||+++|++|++|++++|+|++|
T Consensus 88 ~~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG 167 (737)
T TIGR02441 88 QEVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTG 167 (737)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhC
Confidence 111111123457888999999999999999999999999999999999987 589999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHhcCcccEecCC-------------CcHHHHHHHHHHHHhccC----------H-------
Q 020093 223 PKKAREMWFLARFYTAEEAEKMGLVNTVVPL-------------EKLEQETIKWSREILRNS----------P------- 272 (331)
Q Consensus 223 ~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la~~~----------~------- 272 (331)
..+|++|+++|++++|+||+++||||+|||+ +++.+.+.+++++++... +
T Consensus 168 ~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (737)
T TIGR02441 168 VPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLVHKITQYVM 247 (737)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcccCCccccccccCccchhhc
Confidence 9999999999999999999999999999987 457788888887765321 0
Q ss_pred -------HHHHHHHHHHHcc------------------cc-CchhHHHHHHHHHHHHhCChhHHHHHHHHhcC
Q 020093 273 -------TAIRVLKSALNAV------------------DD-GHAGLQTLGGDATLIFYGTEEGSEGKTAFVER 319 (331)
Q Consensus 273 -------~a~~~~K~~l~~~------------------~~-~~~~~~~~~~~~~~~~~~s~d~~egi~aflek 319 (331)
..+...++.++.. .. ........|.+.+..+..|++.+.-+..|+-.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~g~~~Ap~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~al~~~f~~~ 320 (737)
T TIGR02441 248 TNPFVRQQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTFESKALIGLFHGQ 320 (737)
T ss_pred ccchhHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 0111111111111 11 11234567888899999999999999998843
No 87
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=3.1e-42 Score=294.62 Aligned_cols=252 Identities=28% Similarity=0.368 Sum_probs=216.5
Q ss_pred EEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhh
Q 020093 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG 150 (331)
Q Consensus 71 v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~ 150 (331)
.+++. +++|-.|+||+|+|+|.|+..|+.+|.+.|....+..++|+|||+..| +.||+|.||+++......+.....
T Consensus 34 g~~~~--~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~G-kifSaGH~LKELt~e~g~d~haev 110 (287)
T KOG1682|consen 34 GLVKE--HNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQG-KIFSAGHNLKELTNEPGSDIHAEV 110 (287)
T ss_pred ccccc--ccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCC-ccccccccHHHhhcCccchHHHHH
Confidence 44555 789999999999999999999999999999998888999999999999 699999999998754322222222
Q ss_pred hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHH
Q 020093 151 RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMW 230 (331)
Q Consensus 151 ~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ 230 (331)
.....+++.-|+++|.|||+.|||+|..+|+.|...||++||+++++|..|..++|++-...| .-|.|.+....+.+|+
T Consensus 111 Fqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPG-vAlaRavpRkva~~ML 189 (287)
T KOG1682|consen 111 FQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPG-VALARAVPRKVAAYML 189 (287)
T ss_pred HHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcc-hhHhhhcchhHHHHHH
Confidence 233457888999999999999999999999999999999999999999999999998765543 4578999999999999
Q ss_pred HcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHcccc-CchhHHHHHHHHHHHHhCChhH
Q 020093 231 FLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDD-GHAGLQTLGGDATLIFYGTEEG 309 (331)
Q Consensus 231 ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~~~~~~~~~~s~d~ 309 (331)
+||.+++++||+.-|||+++||.++|+.++++++..|-..+...+..-|+.+..... ...+......+.+..-++-.|.
T Consensus 190 ~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~~i~~~i~~~srav~slgk~f~y~q~~ms~~ea~~~~~~~m~~n~ql~d~ 269 (287)
T KOG1682|consen 190 MTGLPITGEEALISGLVSKVVPAEELDKEIEEITNAIKAKSRAVISLGKEFYYKQLAMSQAEAFSAAQEKMCENFQLGDT 269 (287)
T ss_pred HhCCCCchHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccch
Confidence 999999999999999999999999999999999999999999999999998876443 2223333344455556778999
Q ss_pred HHHHHHHhcCCCCCCCC
Q 020093 310 SEGKTAFVERRRPDFLK 326 (331)
Q Consensus 310 ~egi~aflekr~p~f~~ 326 (331)
+|||.+|++||+|+|+.
T Consensus 270 kegiasf~~krp~~~~h 286 (287)
T KOG1682|consen 270 KEGIASFFEKRPPNWKH 286 (287)
T ss_pred HHHHHHHhccCCCCcCC
Confidence 99999999999999975
No 88
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=1.7e-42 Score=345.53 Aligned_cols=207 Identities=19% Similarity=0.244 Sum_probs=179.7
Q ss_pred CCCcccEEEEEeeCCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHhcc-cCCCeeEEEEEeCCCCceeccc
Q 020093 65 GTEFTDIIYEKAVGEGIAKITINRPD----------RRNAFRPHTVKELIRAFNDAR-DDSSVGVIILTGKGTEAFCSGG 133 (331)
Q Consensus 65 ~~~~~~v~~~~~~~~~v~~ItLnrp~----------~~Nal~~~~~~eL~~al~~~~-~d~~v~~vVl~g~g~~~FcaG~ 133 (331)
+++|+++.+++ +++|++||||||+ |+|+||.+|+.+|.++|++++ .|+++|+|||||.|+++||+|+
T Consensus 7 ~~~~~~v~~~~--~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~ 84 (546)
T TIGR03222 7 PSQYRHWKLTF--DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGA 84 (546)
T ss_pred CCCCceEEEEe--eCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCc
Confidence 55678899999 8999999999976 999999999999999999999 7899999999997547999999
Q ss_pred cccchhcCCCcchhhhhh---hhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCC--ceeecCCCC-ccC
Q 020093 134 DQALRTRDGYADYENFGR---LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN--AIFGQTGPK-VGS 207 (331)
Q Consensus 134 Dl~~~~~~~~~~~~~~~~---~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~--a~f~~pe~~-~Gl 207 (331)
|++++............. .....+...+..+||||||+|||+|+|||++|+++||+||++++ ++|++||++ +|+
T Consensus 85 DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl 164 (546)
T TIGR03222 85 NIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGV 164 (546)
T ss_pred CHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCc
Confidence 999874311100001100 01123455678999999999999999999999999999999986 799999997 999
Q ss_pred CCCchHHHHHH--HhhCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHH
Q 020093 208 FDAGYGSSIMS--RLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPT 273 (331)
Q Consensus 208 ~p~~g~~~~L~--r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~ 273 (331)
+|++|++.+|+ +++|..+|++|+++|+.++|+||++|||||+|||++++++++.++|++|+..||.
T Consensus 165 ~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~ 232 (546)
T TIGR03222 165 LPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAAQSDR 232 (546)
T ss_pred CCccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHHhCCCC
Confidence 99999999997 7999999999999999999999999999999999999999999999999998773
No 89
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=1.5e-41 Score=339.79 Aligned_cols=208 Identities=20% Similarity=0.245 Sum_probs=179.1
Q ss_pred CCCcccEEEEEeeCCCEEEEEEcCC-------C---CCCCCCHHHHHHHHHHHHhcc-cCCCeeEEEEEeCCCCceeccc
Q 020093 65 GTEFTDIIYEKAVGEGIAKITINRP-------D---RRNAFRPHTVKELIRAFNDAR-DDSSVGVIILTGKGTEAFCSGG 133 (331)
Q Consensus 65 ~~~~~~v~~~~~~~~~v~~ItLnrp-------~---~~Nal~~~~~~eL~~al~~~~-~d~~v~~vVl~g~g~~~FcaG~ 133 (331)
...|+++.++. +++|++|||||| + ++|+||.+|+.+|.+++++++ .|++|++|||+|.|+++||+|+
T Consensus 11 ~~~~~~~~~e~--~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~ 88 (550)
T PRK08184 11 PSQYRHWKLSF--DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGA 88 (550)
T ss_pred CCCCceEEEEe--eCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCcc
Confidence 34578899999 899999999965 4 899999999999999999999 7899999999998657999999
Q ss_pred cccchhcCCCcchhhhhh---hhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCC--ceeecCCCC-ccC
Q 020093 134 DQALRTRDGYADYENFGR---LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN--AIFGQTGPK-VGS 207 (331)
Q Consensus 134 Dl~~~~~~~~~~~~~~~~---~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~--a~f~~pe~~-~Gl 207 (331)
|++++............. .....+...+.++||||||+|||+|+|||++|+++|||||++++ ++|++||++ +|+
T Consensus 89 DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl 168 (550)
T PRK08184 89 NIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGV 168 (550)
T ss_pred CHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhcccc
Confidence 999864321110000100 01112445678999999999999999999999999999999987 899999997 999
Q ss_pred CCCchHHHHHH--HhhCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHH
Q 020093 208 FDAGYGSSIMS--RLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTA 274 (331)
Q Consensus 208 ~p~~g~~~~L~--r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a 274 (331)
+|++|++++|+ +++|..+|++|+++|+.++|+||++|||||++||++++.+++.++|++|+..||..
T Consensus 169 ~P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia~~~~~~ 237 (550)
T PRK08184 169 LPGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELAAASDRP 237 (550)
T ss_pred CCCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999998 78999999999999999999999999999999999999999999999999887654
No 90
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=100.00 E-value=3e-41 Score=297.42 Aligned_cols=194 Identities=40% Similarity=0.639 Sum_probs=174.7
Q ss_pred EEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch-hhh
Q 020093 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY-ENF 149 (331)
Q Consensus 71 v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~-~~~ 149 (331)
+.+++ +++|++|+||+|++.|++|.+|+++|.++++.++.|+++++|||+|.| +.||+|+|++++........ ...
T Consensus 1 i~~~~--~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~-~~Fs~G~dl~~~~~~~~~~~~~~~ 77 (195)
T cd06558 1 VLVER--DGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAG-KAFCAGADLKELAALSDAGEEARA 77 (195)
T ss_pred CEEEE--ECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceEeCcCHHHHhcccccchhHHH
Confidence 35667 789999999999999999999999999999999999999999999997 69999999998764332211 011
Q ss_pred hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHH
Q 020093 150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREM 229 (331)
Q Consensus 150 ~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l 229 (331)
....+.+++..+..++|||||+|||+|+|+|++++++||+||++++++|++||+++|++|++|++++|++++|.++++++
T Consensus 78 ~~~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~ 157 (195)
T cd06558 78 FIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARAREL 157 (195)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHH
Confidence 12345678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHH
Q 020093 230 WFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREI 267 (331)
Q Consensus 230 ~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l 267 (331)
+++|+.++++||+++|||+++++.+++.+++.++++++
T Consensus 158 ~l~g~~~~a~ea~~~Glv~~~~~~~~l~~~a~~~a~~~ 195 (195)
T cd06558 158 LLTGRRISAEEALELGLVDEVVPDEELLAAALELARRL 195 (195)
T ss_pred HHcCCccCHHHHHHcCCCCeecChhHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999988763
No 91
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=5e-40 Score=302.53 Aligned_cols=256 Identities=22% Similarity=0.276 Sum_probs=212.6
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcc---
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD--- 145 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~--- 145 (331)
..|+++. .++..+||||||+.+||||.+|...+...|..++.++.+++||+.|.|+++||+|+|++.........
T Consensus 38 ~~VL~e~--~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~ 115 (401)
T KOG1684|consen 38 DQVLVEG--KGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETP 115 (401)
T ss_pred CceEEec--CCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCch
Confidence 4699999 99999999999999999999999999999999999999999999999889999999998654321111
Q ss_pred hhhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHH
Q 020093 146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK 225 (331)
Q Consensus 146 ~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~ 225 (331)
.........+.+...|.++.||.||.++|..||||++|+++.-||||+|++.|.+||+.+|++|+.|++++|+|+.| ..
T Consensus 116 ~~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg-~l 194 (401)
T KOG1684|consen 116 EVKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG-YL 194 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc-HH
Confidence 11111234567888999999999999999999999999999999999999999999999999999999999999999 68
Q ss_pred HHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHH----------------------------------------------
Q 020093 226 AREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQE---------------------------------------------- 259 (331)
Q Consensus 226 a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~---------------------------------------------- 259 (331)
+.+|.|||.++++.||+..||.++.|+.++|...
T Consensus 195 g~YLgLTG~rl~GaD~~~~GlATHyv~S~~l~~Lee~L~~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~~~Fs 274 (401)
T KOG1684|consen 195 GLYLGLTGQRLSGADALRCGLATHYVPSEKLPSLEERLLKNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVINKCFS 274 (401)
T ss_pred HHhhhhccceecchHHHHhcchhhccchhhhhHHHHHHhhhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHHHHhhc
Confidence 9999999999999999999999999987554221
Q ss_pred -----------------------HHHHHHHHhccCHHHHHHHHHHHHcccc-CchhHHHHHHHHHHHHhCChhHHHHHHH
Q 020093 260 -----------------------TIKWSREILRNSPTAIRVLKSALNAVDD-GHAGLQTLGGDATLIFYGTEEGSEGKTA 315 (331)
Q Consensus 260 -----------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~~~~~~~~~~s~d~~egi~a 315 (331)
|.+-.+.|...+|.++..+-+.+..... ...+..-.|+.....+..+.||.||++|
T Consensus 275 ~~tVeeIie~lk~~q~~~~~~ewak~tlk~L~k~SPtSLkvT~r~i~egs~~tl~~~l~~Eyr~s~~~~~~~DF~EGvRA 354 (401)
T KOG1684|consen 275 ANTVEEIIEALKNYQQSADGSEWAKETLKTLKKMSPTSLKVTLRQIREGSKQTLDQCLTMEYRLSLRMLMRGDFCEGVRA 354 (401)
T ss_pred cccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchhhhhhh
Confidence 2223334556788888888888775432 2233445566666667789999999999
Q ss_pred Hh--cCCCCCCCCC
Q 020093 316 FV--ERRRPDFLKF 327 (331)
Q Consensus 316 fl--ekr~p~f~~~ 327 (331)
-| ..+.|+|+..
T Consensus 355 ~LIDKd~~PKW~p~ 368 (401)
T KOG1684|consen 355 VLIDKDQNPKWDPA 368 (401)
T ss_pred eeecCCcCCCCCCc
Confidence 98 3488999864
No 92
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.85 E-value=1.8e-21 Score=169.48 Aligned_cols=144 Identities=19% Similarity=0.228 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcCccc
Q 020093 98 HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177 (331)
Q Consensus 98 ~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~ 177 (331)
-.+.+|.++|+++++|++|++|||++ ||.|+|+.... .+.+++..+.+++|||||+|+|.|.
T Consensus 22 ~~~~~l~~~l~~a~~d~~v~~vvl~~-----~~~gg~~~~~~-------------~~~~~i~~~~~~~kpVia~v~G~a~ 83 (177)
T cd07014 22 VSGDTTAAQIRDARLDPKVKAIVLRV-----NSPGGSVTASE-------------VIRAELAAARAAGKPVVASGGGNAA 83 (177)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEe-----eCCCcCHHHHH-------------HHHHHHHHHHhCCCCEEEEECCchh
Confidence 35689999999999999999999986 67888876421 2345667788899999999999999
Q ss_pred cchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHH--------HHHHhhC--HHHHHHHHHcCCCCCHHHHHhcCcc
Q 020093 178 GGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSS--------IMSRLVG--PKKAREMWFLARFYTAEEAEKMGLV 247 (331)
Q Consensus 178 GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~--------~L~r~vG--~~~a~~l~ltG~~~~a~eA~~~GLv 247 (331)
|+|+.|+++||+++++++++|+++++..+..+...... .+++..| ....++++..|+.++|+||++.|||
T Consensus 84 g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLV 163 (177)
T cd07014 84 SGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLV 163 (177)
T ss_pred HHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCc
Confidence 99999999999999999999999877666322111111 3455555 7788999999999999999999999
Q ss_pred cEecCCCcHHHH
Q 020093 248 NTVVPLEKLEQE 259 (331)
Q Consensus 248 ~~vv~~~~l~~~ 259 (331)
|++.+.+++.+.
T Consensus 164 D~v~~~~e~~~~ 175 (177)
T cd07014 164 DSLGSFDDAVAK 175 (177)
T ss_pred ccCCCHHHHHHH
Confidence 999988776543
No 93
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.85 E-value=1.3e-20 Score=165.42 Aligned_cols=152 Identities=22% Similarity=0.257 Sum_probs=120.6
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHH
Q 020093 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ 160 (331)
Q Consensus 81 v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (331)
|++|.|+ ..++..+...+.+.|+.+++|+ ++.|+|.=.- .|+++.. ...++..
T Consensus 1 ~~vv~i~-----g~I~~~~~~~l~~~l~~a~~~~-~~~vvl~InS-----pGG~v~~----------------~~~i~~~ 53 (187)
T cd07020 1 VYVLEIN-----GAITPATADYLERAIDQAEEGG-ADALIIELDT-----PGGLLDS----------------TREIVQA 53 (187)
T ss_pred CEEEEEe-----eEEChHHHHHHHHHHHHHHhCC-CCEEEEEEEC-----CCCCHHH----------------HHHHHHH
Confidence 3567776 3477788889999999998665 7888875322 3555432 1245567
Q ss_pred HHcCCCcEEEEEc---CccccchhhhhhcccEEEEeCCceeecCCCCccCCCCc--------------hHHHHHHHhhCH
Q 020093 161 IRRLPKPVIAMVA---GYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAG--------------YGSSIMSRLVGP 223 (331)
Q Consensus 161 l~~~~kPvIAav~---G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~--------------g~~~~L~r~vG~ 223 (331)
|..+||||||+|+ |+|+|||+.|+++||++|++++++|+++++..+..+.. .....+++.+|.
T Consensus 54 l~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~ 133 (187)
T cd07020 54 ILASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGR 133 (187)
T ss_pred HHhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7889999999999 99999999999999999999999999999985544332 234578888897
Q ss_pred --HHHHHHHHcCCCCCHHHHHhcCcccEecCCC-cHHHH
Q 020093 224 --KKAREMWFLARFYTAEEAEKMGLVNTVVPLE-KLEQE 259 (331)
Q Consensus 224 --~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~-~l~~~ 259 (331)
.++++++++|+.|+++||+++||||++++++ ++...
T Consensus 134 ~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~~ 172 (187)
T cd07020 134 NAEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLKK 172 (187)
T ss_pred CHHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHHH
Confidence 6899999999999999999999999999886 55543
No 94
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.71 E-value=1.7e-17 Score=148.39 Aligned_cols=145 Identities=18% Similarity=0.221 Sum_probs=105.4
Q ss_pred CCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcC
Q 020093 95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG 174 (331)
Q Consensus 95 l~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G 174 (331)
-+..++.+|.++|+.+..|++|++|||+ .||+|+|+..+. .+.+.+..++.++|||||+++|
T Consensus 18 ~~~~~~~~l~~~l~~a~~d~~v~~ivL~-----~~s~Gg~~~~~~-------------~~~~~l~~~~~~~kpVia~v~g 79 (211)
T cd07019 18 QGNVGGDTTAAQIRDARLDPKVKAIVLR-----VNSPGGSVTASE-------------VIRAELAAARAAGKPVVVSAGG 79 (211)
T ss_pred CCccCHHHHHHHHHHHhhCCCceEEEEE-----EcCCCcCHHHHH-------------HHHHHHHHHHhCCCCEEEEECC
Confidence 3455789999999999999999999996 799999997542 1234566788899999999999
Q ss_pred ccccchhhhhhcccEEEEeCCceeecCC------------CCccCCC---CchH--------------HHHHHHhhC---
Q 020093 175 YAVGGGHVLHMVCDLTIAADNAIFGQTG------------PKVGSFD---AGYG--------------SSIMSRLVG--- 222 (331)
Q Consensus 175 ~a~GgG~~Lal~cD~~ia~~~a~f~~pe------------~~~Gl~p---~~g~--------------~~~L~r~vG--- 222 (331)
.|.|+|+.|+++||++++++++.|+... .++|+-+ -.++ -..+...+.
T Consensus 80 ~a~s~gy~la~~aD~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~e~r~~~~~~ld~~~ 159 (211)
T cd07019 80 AAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLGLQLSIENGY 159 (211)
T ss_pred eehhHHHHHHHhCCEEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887533 1223211 0100 011111111
Q ss_pred -------------HHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHH
Q 020093 223 -------------PKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLE 257 (331)
Q Consensus 223 -------------~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~ 257 (331)
.....+-+..|..++++||++.||||++...++..
T Consensus 160 ~~f~~~Va~~R~~~~~~l~~~~~~~~~~~~~A~~~GLvD~i~~~~~~~ 207 (211)
T cd07019 160 KRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAV 207 (211)
T ss_pred HHHHHHHHhhCCCCHHHHHHhcCCcEEeHHHHHHcCCcccCCCHHHHH
Confidence 01123345678999999999999999997655543
No 95
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.66 E-value=6.8e-16 Score=138.38 Aligned_cols=150 Identities=22% Similarity=0.213 Sum_probs=102.3
Q ss_pred cCCCCCCCC-CHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCC
Q 020093 87 NRPDRRNAF-RPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLP 165 (331)
Q Consensus 87 nrp~~~Nal-~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 165 (331)
++|...|++ +..++.+|.++|+++++|++|++|||+. +|.|+++... ..+.+.+..+.. +
T Consensus 13 ~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~-----~s~gg~~~~~-------------~~l~~~l~~~~~-~ 73 (214)
T cd07022 13 PRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI-----DSPGGEVAGV-------------FELADAIRAARA-G 73 (214)
T ss_pred CCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE-----eCCCCcHHHH-------------HHHHHHHHHHhc-C
Confidence 456655654 5689999999999999999999999965 4556655321 012233333444 5
Q ss_pred CcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCC------------Cc--------------hHH----H
Q 020093 166 KPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFD------------AG--------------YGS----S 215 (331)
Q Consensus 166 kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p------------~~--------------g~~----~ 215 (331)
|||||+++|.|.|+|+.|+++||++++++++.|+...+....+. .. ..+ .
T Consensus 74 KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re 153 (214)
T cd07022 74 KPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARA 153 (214)
T ss_pred CCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHH
Confidence 99999999999999999999999999999999876432222110 00 000 0
Q ss_pred HHHHhh-----------------CHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHH
Q 020093 216 IMSRLV-----------------GPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLE 257 (331)
Q Consensus 216 ~L~r~v-----------------G~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~ 257 (331)
.+..++ .....++++ |+.+++++|++.||||++...+++.
T Consensus 154 ~~~~~l~~~~~~f~~~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~~~~~ 210 (214)
T cd07022 154 RLQAEVDALYAMFVAAVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGTLDDAL 210 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCCHHHHH
Confidence 011111 122234444 9999999999999999998665543
No 96
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.65 E-value=2.4e-16 Score=160.17 Aligned_cols=177 Identities=18% Similarity=0.246 Sum_probs=133.4
Q ss_pred CCCEEEEEEcCCCC--CCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHH
Q 020093 78 GEGIAKITINRPDR--RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVL 155 (331)
Q Consensus 78 ~~~v~~ItLnrp~~--~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~ 155 (331)
++.|++|+++.+-. .|..+....+.+.+.|+++..|++|++|||+-+.+ |++... ...+.
T Consensus 307 ~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSp-----GGs~~a-------------se~i~ 368 (584)
T TIGR00705 307 QDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSP-----GGSVFA-------------SEIIR 368 (584)
T ss_pred CCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCC-----CCCHHH-------------HHHHH
Confidence 67899999997642 34444445678888999999999999999997543 332211 01123
Q ss_pred HHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCcee------ecCC------CCccCCCCchHHHHHHH----
Q 020093 156 DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF------GQTG------PKVGSFDAGYGSSIMSR---- 219 (331)
Q Consensus 156 ~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f------~~pe------~~~Gl~p~~g~~~~L~r---- 219 (331)
+.+..+...+|||||.++|.|.+||+.|+++||.++|++.+.+ +.+. .++|+.++...+..+.+
T Consensus 369 ~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~ 448 (584)
T TIGR00705 369 RELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLL 448 (584)
T ss_pred HHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCC
Confidence 3445667788999999999999999999999999999999987 4442 47787766554443332
Q ss_pred ------------------------hhCHHH-----HHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhcc
Q 020093 220 ------------------------LVGPKK-----AREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRN 270 (331)
Q Consensus 220 ------------------------~vG~~~-----a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~ 270 (331)
.|+..+ +.+.+.+|+.++++||+++||||++. .+ ++|.+.|++++..
T Consensus 449 ~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig---~~-~~Ai~~a~~la~~ 524 (584)
T TIGR00705 449 RPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALG---GL-DEAVAKAAKLAHC 524 (584)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCC---CH-HHHHHHHHHHcCC
Confidence 566666 77889999999999999999999994 44 7788889999988
Q ss_pred -CHHHHH
Q 020093 271 -SPTAIR 276 (331)
Q Consensus 271 -~~~a~~ 276 (331)
++.++.
T Consensus 525 ~~~~~v~ 531 (584)
T TIGR00705 525 REQWSVE 531 (584)
T ss_pred CCCceEE
Confidence 555544
No 97
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.62 E-value=2.3e-15 Score=128.88 Aligned_cols=135 Identities=26% Similarity=0.291 Sum_probs=105.0
Q ss_pred CCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcC
Q 020093 95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG 174 (331)
Q Consensus 95 l~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G 174 (331)
++..++.+|.+.|+.++.|+++++|+|.. .|.|+|+.. ...+...|..++||||+.++|
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~-----~s~Gg~~~~----------------~~~i~~~l~~~~kpvva~~~g 66 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVKAIVLEV-----NTPGGRVDA----------------GMNIVDALQASRKPVIAYVGG 66 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCceEEEEE-----ECCCcCHHH----------------HHHHHHHHHHhCCCEEEEECC
Confidence 66788999999999999999999999965 456776542 124556777888999999999
Q ss_pred ccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHH-------------HHHHHhh------CHHHHHHHHHcCCC
Q 020093 175 YAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGS-------------SIMSRLV------GPKKAREMWFLARF 235 (331)
Q Consensus 175 ~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~-------------~~L~r~v------G~~~a~~l~ltG~~ 235 (331)
.|.++|+.|+++||.|++.+++.|++.++..+.....+.. ..+...+ ......+++..|..
T Consensus 67 ~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~ 146 (161)
T cd00394 67 QAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLV 146 (161)
T ss_pred hhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcE
Confidence 9999999999999999999999999988776643221000 1111111 23346777888999
Q ss_pred CCHHHHHhcCcccEe
Q 020093 236 YTAEEAEKMGLVNTV 250 (331)
Q Consensus 236 ~~a~eA~~~GLv~~v 250 (331)
++++||+++||||+|
T Consensus 147 ~~a~eA~~~GLvD~i 161 (161)
T cd00394 147 LTAQEALEYGLVDAL 161 (161)
T ss_pred EcHHHHHHcCCcCcC
Confidence 999999999999975
No 98
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.60 E-value=4e-15 Score=132.81 Aligned_cols=152 Identities=25% Similarity=0.345 Sum_probs=107.9
Q ss_pred EEEEEEcCCCCCCCCC---HHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHH
Q 020093 81 IAKITINRPDRRNAFR---PHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL 157 (331)
Q Consensus 81 v~~ItLnrp~~~Nal~---~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l 157 (331)
|++|.++-+ ++ ..++.+|.++|+.++.|+++++|||++ +|.|+|+.... .+.+.
T Consensus 2 v~vi~i~g~-----i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~-----~s~Gg~~~~~~-------------~i~~~ 58 (208)
T cd07023 2 IAVIDIEGT-----ISDGGGIGADSLIEQLRKAREDDSVKAVVLRI-----NSPGGSVVASE-------------EIYRE 58 (208)
T ss_pred EEEEEEEEE-----EcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEE-----ECCCCCHHHHH-------------HHHHH
Confidence 566666633 33 789999999999999999999999987 46788876421 13455
Q ss_pred HHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCC------------ccCCCCch-------------
Q 020093 158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPK------------VGSFDAGY------------- 212 (331)
Q Consensus 158 ~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~------------~Gl~p~~g------------- 212 (331)
+..+..++|||||+++|.|.|+|+.|+++||++++++++.|+...+. +|+-+...
T Consensus 59 i~~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~ 138 (208)
T cd07023 59 IRRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDR 138 (208)
T ss_pred HHHHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCC
Confidence 66788889999999999999999999999999999999998754321 12111000
Q ss_pred -----HHHHHHHhhCH----------------HHHHHHHHcCCCCCHHHHHhcCcccEecCCCc
Q 020093 213 -----GSSIMSRLVGP----------------KKAREMWFLARFYTAEEAEKMGLVNTVVPLEK 255 (331)
Q Consensus 213 -----~~~~L~r~vG~----------------~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~ 255 (331)
....+..++.. ....+-++.|..+++++|++.||||++...++
T Consensus 139 ~~s~~~~e~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~a~~A~~~gLiD~i~~~~~ 202 (208)
T cd07023 139 PLTEEERAILQALVDDIYDQFVDVVAEGRGMSGERLDKLADGRVWTGRQALELGLVDELGGLDD 202 (208)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcCCcEEEHHHHHHcCCCcccCCHHH
Confidence 00111111110 01123356788999999999999999976544
No 99
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.56 E-value=3.5e-14 Score=121.52 Aligned_cols=129 Identities=22% Similarity=0.313 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcCccc
Q 020093 98 HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177 (331)
Q Consensus 98 ~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~ 177 (331)
.+...+.+.|+.++.++.+ .+.|.+.| +++.. ...+...|..++||||+.++|.|.
T Consensus 15 ~~~~~~~~~l~~~~~~~~i-~l~inspG-------G~~~~----------------~~~i~~~i~~~~~pvi~~v~g~a~ 70 (160)
T cd07016 15 VTAKEFKDALDALGDDSDI-TVRINSPG-------GDVFA----------------GLAIYNALKRHKGKVTVKIDGLAA 70 (160)
T ss_pred cCHHHHHHHHHhccCCCCE-EEEEECCC-------CCHHH----------------HHHHHHHHHhcCCCEEEEEcchHH
Confidence 5678888899998887433 34444444 33221 124666788899999999999999
Q ss_pred cchhhhhhcccEEEEeCCceeecCCCCccCCCCchH---------------HHHHHHhhC--HHHHHHHHHcCCCCCHHH
Q 020093 178 GGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYG---------------SSIMSRLVG--PKKAREMWFLARFYTAEE 240 (331)
Q Consensus 178 GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~---------------~~~L~r~vG--~~~a~~l~ltG~~~~a~e 240 (331)
|+|+.|+++||+|+++++++|++.....|..+.... ...+.+..| .....+++..+..++++|
T Consensus 71 s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~e 150 (160)
T cd07016 71 SAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQE 150 (160)
T ss_pred hHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHH
Confidence 999999999999999999999998777665433211 233777788 677788888888999999
Q ss_pred HHhcCcccEe
Q 020093 241 AEKMGLVNTV 250 (331)
Q Consensus 241 A~~~GLv~~v 250 (331)
|+++||||+|
T Consensus 151 A~~~GliD~v 160 (160)
T cd07016 151 AVELGFADEI 160 (160)
T ss_pred HHHcCCCCcC
Confidence 9999999985
No 100
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.56 E-value=3.4e-14 Score=126.81 Aligned_cols=153 Identities=21% Similarity=0.321 Sum_probs=105.9
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHH
Q 020093 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ 160 (331)
Q Consensus 81 v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (331)
|++|+++-+ ++ ....+|.++|+.+.+|+++++|||++. |.|+|+.. ..++...
T Consensus 2 v~vi~i~g~-----i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~-----s~Gg~~~~----------------~~~l~~~ 54 (207)
T TIGR00706 2 IAILPVSGA-----IA-VSPEDFDKKIKRIKDDKSIKALLLRIN-----SPGGTVVA----------------SEEIYEK 54 (207)
T ss_pred EEEEEEEEE-----Ee-cCHHHHHHHHHHHhhCCCccEEEEEec-----CCCCCHHH----------------HHHHHHH
Confidence 566666643 22 345789999999999999999999874 56776642 1244556
Q ss_pred HHcCC--CcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCc------------cCCC------------Cch--
Q 020093 161 IRRLP--KPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKV------------GSFD------------AGY-- 212 (331)
Q Consensus 161 l~~~~--kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~------------Gl~p------------~~g-- 212 (331)
|.+++ |||||.++|.|.|+|+.|+++||.+++++++.|+...+.. |+-+ ...
T Consensus 55 i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~ 134 (207)
T TIGR00706 55 LKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRE 134 (207)
T ss_pred HHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCC
Confidence 66776 9999999999999999999999999999999887643322 2110 000
Q ss_pred ----HHHHHHHh-----------------hCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHH
Q 020093 213 ----GSSIMSRL-----------------VGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETI 261 (331)
Q Consensus 213 ----~~~~L~r~-----------------vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~ 261 (331)
.-..+.+. +...... -++.|+.+++++|++.||||++...+++.+.+.
T Consensus 135 ~s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~-~~~~~~~~~~~~A~~~gLvD~i~~~~~~~~~~~ 203 (207)
T TIGR00706 135 LTPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVK-KFADGRVFTGRQALKLRLVDKLGTEDDALKWLA 203 (207)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH-HHhcCCcccHHHHHHcCCCcccCCHHHHHHHHH
Confidence 00111111 1122222 356789999999999999999987666554433
No 101
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.46 E-value=4.1e-13 Score=121.05 Aligned_cols=146 Identities=21% Similarity=0.167 Sum_probs=104.0
Q ss_pred CCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEc
Q 020093 94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA 173 (331)
Q Consensus 94 al~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~ 173 (331)
.-+..++.+|.++|+++..|++|++|||+..++ .| ++.++.++ .+.+..+...+|||||.++
T Consensus 25 ~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~-gg-~~~~~~el----------------~~~i~~~~~~~kpVia~~~ 86 (222)
T cd07018 25 ESSELSLRDLLEALEKAAEDDRIKGIVLDLDGL-SG-GLAKLEEL----------------RQALERFRASGKPVIAYAD 86 (222)
T ss_pred CcCCccHHHHHHHHHHHhcCCCeEEEEEECCCC-CC-CHHHHHHH----------------HHHHHHHHHhCCeEEEEeC
Confidence 345678899999999999999999999999885 55 55555432 3445566778999999999
Q ss_pred CccccchhhhhhcccEEEEeCCceeecCCCCcc------------CCC---------CchHHH-----------HHHHhh
Q 020093 174 GYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVG------------SFD---------AGYGSS-----------IMSRLV 221 (331)
Q Consensus 174 G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~G------------l~p---------~~g~~~-----------~L~r~v 221 (331)
| |.+||+.|+++||.+++.+.+.|+...+... +-+ ..+..+ .+..++
T Consensus 87 ~-~~sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l 165 (222)
T cd07018 87 G-YSQGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALL 165 (222)
T ss_pred C-CCchhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHH
Confidence 8 8899999999999999999999998543221 110 000000 011111
Q ss_pred -----------------CHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHH
Q 020093 222 -----------------GPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQE 259 (331)
Q Consensus 222 -----------------G~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~ 259 (331)
..... +-+..|+.+++++|++.||||++...+++.+.
T Consensus 166 ~~~~~~f~~~Va~~R~~~~~~~-~~~~~~~~~~~~~A~~~GLvD~i~~~~e~~~~ 219 (222)
T cd07018 166 DSLWDQYLADVAASRGLSPDAL-EALIDLGGDSAEEALEAGLVDGLAYRDELEAR 219 (222)
T ss_pred HHHHHHHHHHHHHHcCCCHHHH-HHHHHcCCcHHHHHHHCCCCCcCCcHHHHHHH
Confidence 11222 33455999999999999999999977665543
No 102
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.38 E-value=4.7e-12 Score=110.16 Aligned_cols=141 Identities=24% Similarity=0.284 Sum_probs=102.6
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHH
Q 020093 82 AKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQI 161 (331)
Q Consensus 82 ~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l 161 (331)
.+|.++ ..+++.+...|.++|+++++++ +..|||.=+.+ |+++.. ...+...|
T Consensus 2 ~vi~i~-----g~I~~~~~~~l~~~l~~a~~~~-~~~ivl~insp-----GG~v~~----------------~~~I~~~l 54 (178)
T cd07021 2 YVIPIE-----GEIDPGLAAFVERALKEAKEEG-ADAVVLDIDTP-----GGRVDS----------------ALEIVDLI 54 (178)
T ss_pred EEEEEe-----eEECHHHHHHHHHHHHHHHhCC-CCeEEEEEECc-----CCCHHH----------------HHHHHHHH
Confidence 456665 3477888899999999999886 77777754432 544432 23566788
Q ss_pred HcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchH--------HHH------HHHhhC--HHH
Q 020093 162 RRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYG--------SSI------MSRLVG--PKK 225 (331)
Q Consensus 162 ~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~--------~~~------L~r~vG--~~~ 225 (331)
..+++|||+.|+|.|.++|+.|+++||++++++++.|+.+++-. ..++ ... +.+.-| ...
T Consensus 55 ~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v~----~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~~~ 130 (178)
T cd07021 55 LNSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEPIP----GDGNGAADEKVQSYWRAKMRAAAEKKGRDPDI 130 (178)
T ss_pred HhCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCeeEc----CCCccchhHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 89999999999999999999999999999999999999875442 2222 111 222223 334
Q ss_pred HHHHHHcC-------------CCCCHHHHHhcCcccEecCC
Q 020093 226 AREMWFLA-------------RFYTAEEAEKMGLVNTVVPL 253 (331)
Q Consensus 226 a~~l~ltG-------------~~~~a~eA~~~GLv~~vv~~ 253 (331)
+..|+-.. -.++++||++.|++|.+++.
T Consensus 131 a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~ 171 (178)
T cd07021 131 AEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGS 171 (178)
T ss_pred HHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECC
Confidence 55555544 27999999999999999864
No 103
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=99.04 E-value=5.1e-09 Score=90.44 Aligned_cols=145 Identities=21% Similarity=0.218 Sum_probs=105.8
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHH
Q 020093 82 AKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQI 161 (331)
Q Consensus 82 ~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l 161 (331)
.+|.++ ..+++.+..-|.+.++.+++| +++.|+|.=+- .|+++.. ...++..|
T Consensus 2 ~vi~i~-----G~I~~~~~~~l~~~l~~A~~~-~~~~i~l~inS-----PGG~v~~----------------~~~I~~~i 54 (172)
T cd07015 2 YVAQIK-----GQITSYTYDQFDRYITIAEQD-NAEAIIIELDT-----PGGRADA----------------AGNIVQRI 54 (172)
T ss_pred EEEEEe-----eEECHhHHHHHHHHHHHHhcC-CCCeEEEEEEC-----CCCCHHH----------------HHHHHHHH
Confidence 445554 247788888999999998865 57788775443 3554432 12455677
Q ss_pred HcCCCcEEEEEc---CccccchhhhhhcccEEEEeCCceeecCCCCccCCCC----ch----HHHH------HHHhhC--
Q 020093 162 RRLPKPVIAMVA---GYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDA----GY----GSSI------MSRLVG-- 222 (331)
Q Consensus 162 ~~~~kPvIAav~---G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~----~g----~~~~------L~r~vG-- 222 (331)
...++||++.|. |.|..+|.-|+++||.+++.+++.++...+-.|.-+. .. -... +.+.-|
T Consensus 55 ~~~~~pvv~~v~p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~ 134 (172)
T cd07015 55 QQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRN 134 (172)
T ss_pred HhcCcCEEEEEecCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcC
Confidence 788999999999 9999999999999999999999999998775432110 00 0111 222334
Q ss_pred HHHHHHHHHcCCCCCHHHHHhcCcccEecCC
Q 020093 223 PKKAREMWFLARFYTAEEAEKMGLVNTVVPL 253 (331)
Q Consensus 223 ~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~ 253 (331)
...+..++-....++++||+++|++|.++..
T Consensus 135 ~~~a~~~v~~~~~lta~EA~~~G~iD~ia~~ 165 (172)
T cd07015 135 ATIAEEFITKDLSLTPEEALKYGVIEVVARD 165 (172)
T ss_pred HHHHHHHHHhhcCcCHHHHHHcCCceeeeCC
Confidence 4567778888899999999999999999975
No 104
>PRK10949 protease 4; Provisional
Probab=98.96 E-value=1e-08 Score=104.90 Aligned_cols=167 Identities=21% Similarity=0.321 Sum_probs=108.1
Q ss_pred CCCEEEEEEcC-----CCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhh
Q 020093 78 GEGIAKITINR-----PDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRL 152 (331)
Q Consensus 78 ~~~v~~ItLnr-----p~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~ 152 (331)
.+.|++|+++- ....+.++. +.+.+.|+++.+|++|++|||+-..+ |+.... ..
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrInSp-----GGs~~a-------------se 383 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVNSP-----GGSVTA-------------SE 383 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEecCC-----CCcHHH-------------HH
Confidence 46688888763 222233444 56778888999999999999988764 432211 11
Q ss_pred hHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCC------------CccCCCCchH-------
Q 020093 153 NVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGP------------KVGSFDAGYG------- 213 (331)
Q Consensus 153 ~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~------------~~Gl~p~~g~------- 213 (331)
.+.+.+..++...|||||.+.|.|.-||+-++++||.++|.+.+..|.-.+ ++|+-..+..
T Consensus 384 ~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~ 463 (618)
T PRK10949 384 VIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADV 463 (618)
T ss_pred HHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCc
Confidence 233444556677899999999999999999999999999999877665322 1222111000
Q ss_pred ----------HHHHHHhh-----------------CHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHH
Q 020093 214 ----------SSIMSRLV-----------------GPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSRE 266 (331)
Q Consensus 214 ----------~~~L~r~v-----------------G~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~ 266 (331)
-..+...+ ..... +-+..|+.+++++|++.||||++...++ +.+.|++
T Consensus 464 ~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v-~~ia~Grv~tg~~A~~~GLVD~lG~~~~----ai~~a~~ 538 (618)
T PRK10949 464 SITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQI-DKIAQGHVWTGQDAKANGLVDSLGDFDD----AVAKAAE 538 (618)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHH-HHHhcCCcccHHHHHHcCCCccCCCHHH----HHHHHHH
Confidence 00011111 11222 3356899999999999999999976444 4444555
Q ss_pred Hhcc
Q 020093 267 ILRN 270 (331)
Q Consensus 267 la~~ 270 (331)
++..
T Consensus 539 ~a~~ 542 (618)
T PRK10949 539 LAKL 542 (618)
T ss_pred HcCC
Confidence 5544
No 105
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=98.91 E-value=1.6e-08 Score=86.85 Aligned_cols=135 Identities=16% Similarity=0.173 Sum_probs=95.0
Q ss_pred CCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcC
Q 020093 95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG 174 (331)
Q Consensus 95 l~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G 174 (331)
++..+..++.+.|..++.++.++.|+|.=+.+ |+++.. ...++..|..+++||++.+.|
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSp-----GG~v~~----------------~~~i~~~i~~~~~~v~~~~~g 67 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEKDIYLYINSP-----GGDVFA----------------GMAIYDTIKFIKADVVTIIDG 67 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCCCEEEEEECC-----CCcHHH----------------HHHHHHHHHhcCCCceEEEEe
Confidence 56888999999999999887777777754432 544421 224566778889999999999
Q ss_pred ccccchhhhhhccc--EEEEeCCceeecCCCCccCCCCchHHH---------------HHHHhhC--HHHHHHHHHcCCC
Q 020093 175 YAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGSFDAGYGSS---------------IMSRLVG--PKKAREMWFLARF 235 (331)
Q Consensus 175 ~a~GgG~~Lal~cD--~~ia~~~a~f~~pe~~~Gl~p~~g~~~---------------~L~r~vG--~~~a~~l~ltG~~ 235 (331)
.|.++|.-|+++|| .|++.++++|.+....-|......-.. .+.+..| .....+++-.+..
T Consensus 68 ~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~ 147 (162)
T cd07013 68 LAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTW 147 (162)
T ss_pred ehhhHHHHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCcc
Confidence 99999999999999 688888999887554333211100001 1111122 3345566666778
Q ss_pred CCHHHHHhcCcccEe
Q 020093 236 YTAEEAEKMGLVNTV 250 (331)
Q Consensus 236 ~~a~eA~~~GLv~~v 250 (331)
++|+||+++||||++
T Consensus 148 ~sa~eA~~~GliD~i 162 (162)
T cd07013 148 LSAREAVEYGFADTI 162 (162)
T ss_pred ccHHHHHHcCCCCcC
Confidence 899999999999975
No 106
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.83 E-value=1.2e-09 Score=102.84 Aligned_cols=237 Identities=11% Similarity=0.041 Sum_probs=160.0
Q ss_pred CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHH
Q 020093 79 EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQ 158 (331)
Q Consensus 79 ~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~ 158 (331)
.+++.++++ |+. |..|.++..+|..-++.++.+..+++..+++...+.|++|.|..++.-....- .......+++++
T Consensus 65 ~~~~~~dmv-iea-v~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~f-spa~~m~LlEii 141 (380)
T KOG1683|consen 65 TGFANADMV-IEA-VFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFF-SPAHWMQLLEII 141 (380)
T ss_pred cccccccee-ccc-hhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhcccccc-CHHHHHHHHHHH
Confidence 378888998 665 99999999999999999999999999999998878999999998864322111 111123467888
Q ss_pred HHHHcCCCcEEEEEcCccccch--hhhhhcccEEEEe--CCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCC
Q 020093 159 VQIRRLPKPVIAMVAGYAVGGG--HVLHMVCDLTIAA--DNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLAR 234 (331)
Q Consensus 159 ~~l~~~~kPvIAav~G~a~GgG--~~Lal~cD~~ia~--~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~ 234 (331)
...++++.|+.+++||++--|| +-++-+|+|++.. ..-..+..+...++..+..-.-.+...+|...+-.-+--+.
T Consensus 142 ~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~ 221 (380)
T KOG1683|consen 142 LALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGV 221 (380)
T ss_pred HhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhcc
Confidence 8999999999999999999998 8899999999998 33344667777774332223334444556666666677789
Q ss_pred CCCHHHHHhcCcccEecCC--CcHHHHHHHHHHHHhccCHHHHHHH--------HHHHHccccCchhHHHHHHHHHHHHh
Q 020093 235 FYTAEEAEKMGLVNTVVPL--EKLEQETIKWSREILRNSPTAIRVL--------KSALNAVDDGHAGLQTLGGDATLIFY 304 (331)
Q Consensus 235 ~~~a~eA~~~GLv~~vv~~--~~l~~~a~~~a~~la~~~~~a~~~~--------K~~l~~~~~~~~~~~~~~~~~~~~~~ 304 (331)
-++-+||.+-||++++.|. +++.+....--+.-....+.+-..+ .+.+++..-... ......+-+..+.
T Consensus 222 gfdv~eal~~gl~~~~~~r~~eel~~~~~~g~kT~kg~y~y~~~l~k~~~~~~~~~~~r~l~~~~~-~r~~~~ed~v~~~ 300 (380)
T KOG1683|consen 222 GFDVAEALAVGLGDEIGPRIEEELLEKGRAGIKTGKGIYPYARGLTKKMKRDEMEALLRRLSLTPN-PRVADDEDFVEFL 300 (380)
T ss_pred CccHHHHHhhccchhccchhHHHHHHHHhhhhhccCcccccccccccCCChhhHHHHHHHhccCCC-cccCCHHHHHHHH
Confidence 9999999999999999985 3333333322222222222222111 122222110000 0001112234455
Q ss_pred CChhHHHHHHHHhcC
Q 020093 305 GTEEGSEGKTAFVER 319 (331)
Q Consensus 305 ~s~d~~egi~aflek 319 (331)
.++-.+|++..++|+
T Consensus 301 ~~p~VnEal~~l~EG 315 (380)
T KOG1683|consen 301 LSPFVNEALRCLLEG 315 (380)
T ss_pred hhHHHHHHHHHHHHH
Confidence 678899999999986
No 107
>PRK11778 putative inner membrane peptidase; Provisional
Probab=98.71 E-value=1.9e-07 Score=88.30 Aligned_cols=157 Identities=16% Similarity=0.139 Sum_probs=99.8
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHH
Q 020093 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL 157 (331)
Q Consensus 78 ~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l 157 (331)
.+.|++|.++-+=..+. ...+.+++...+..+..+ ..|||+-+.+ |+.+.... . ....
T Consensus 89 ~~~v~VI~~~G~I~~~~-~~~l~e~i~a~l~~A~~~---~aVvLridSp-----GG~v~~s~---------~----a~~~ 146 (330)
T PRK11778 89 KPRLFVLDFKGDIDASE-VESLREEITAILAVAKPG---DEVLLRLESP-----GGVVHGYG---------L----AASQ 146 (330)
T ss_pred CCeEEEEEEEEEECCCc-chhhHHHHHHHHHhccCC---CeEEEEEeCC-----CCchhHHH---------H----HHHH
Confidence 46788888885432111 123446666666655543 4677766554 44332110 0 1112
Q ss_pred HHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhC---------------
Q 020093 158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVG--------------- 222 (331)
Q Consensus 158 ~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG--------------- 222 (331)
+.+++...||+|+.+++.|.-||+.++++||-+++.+.+.+|...+-.. .|. ...|...+|
T Consensus 147 l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~-~~~---~~~lLeKlGI~~evi~aG~yK~a~ 222 (330)
T PRK11778 147 LQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQ-IPN---FHRLLKKHDIDVELHTAGEYKRTL 222 (330)
T ss_pred HHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeee-ccC---HHHHHHHCCCceEEEEecCccCCC
Confidence 3456778899999999999999999999999999999998887443221 111 111111111
Q ss_pred ------------------------------HH---HHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHH
Q 020093 223 ------------------------------PK---KAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQET 260 (331)
Q Consensus 223 ------------------------------~~---~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a 260 (331)
.. ...+-+.+|+.+++++|++.||||++...+++...+
T Consensus 223 ~pf~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~i~~~ 293 (330)
T PRK11778 223 TLFGENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLEL 293 (330)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHHHHHH
Confidence 11 123456789999999999999999998777654433
No 108
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.68 E-value=2.3e-07 Score=82.39 Aligned_cols=140 Identities=19% Similarity=0.169 Sum_probs=92.2
Q ss_pred CCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEE
Q 020093 93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV 172 (331)
Q Consensus 93 Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav 172 (331)
..++.++...+...|..++.++..+-|.|.=+. .|+|+.. ...++..|...+.||++.+
T Consensus 38 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InS-----pGG~v~~----------------g~~I~d~i~~~~~~v~t~~ 96 (200)
T PRK00277 38 GEVEDHMANLIVAQLLFLEAEDPDKDIYLYINS-----PGGSVTA----------------GLAIYDTMQFIKPDVSTIC 96 (200)
T ss_pred CEECHHHHHHHHHHHHHhhccCCCCCEEEEEEC-----CCCcHHH----------------HHHHHHHHHhcCCCEEEEE
Confidence 447889999999999888765444434432222 2334321 1234556778889999999
Q ss_pred cCccccchhhhhhccc--EEEEeCCceeecCCCCccCCCCchH----H-----------HHHHHhhC--HHHHHHHHHcC
Q 020093 173 AGYAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGSFDAGYG----S-----------SIMSRLVG--PKKAREMWFLA 233 (331)
Q Consensus 173 ~G~a~GgG~~Lal~cD--~~ia~~~a~f~~pe~~~Gl~p~~g~----~-----------~~L~r~vG--~~~a~~l~ltG 233 (331)
.|.|.+.|..|+++++ .|++.++++|.+....-|......- + ..+....| .....+++-.+
T Consensus 97 ~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~ 176 (200)
T PRK00277 97 IGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKDTDRD 176 (200)
T ss_pred EeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCC
Confidence 9999999999998754 6888888888776554222110000 0 11222233 24455666677
Q ss_pred CCCCHHHHHhcCcccEecCC
Q 020093 234 RFYTAEEAEKMGLVNTVVPL 253 (331)
Q Consensus 234 ~~~~a~eA~~~GLv~~vv~~ 253 (331)
..++|+||+++||||+|+..
T Consensus 177 ~~lsa~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 177 NFMSAEEAKEYGLIDEVLTK 196 (200)
T ss_pred ccccHHHHHHcCCccEEeec
Confidence 89999999999999999865
No 109
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=98.66 E-value=2.4e-07 Score=80.23 Aligned_cols=133 Identities=20% Similarity=0.230 Sum_probs=96.7
Q ss_pred CCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcC
Q 020093 95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG 174 (331)
Q Consensus 95 l~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G 174 (331)
++.++..++...|..++.++..+.|+|.=+.+ |+|+.. ...++..|...+.||++.+.|
T Consensus 18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSp-----GG~v~~----------------~~~i~~~l~~~~~~v~t~~~g 76 (171)
T cd07017 18 IDDEVANLIIAQLLYLESEDPKKPIYLYINSP-----GGSVTA----------------GLAIYDTMQYIKPPVSTICLG 76 (171)
T ss_pred EcHHHHHHHHHHHHHHHccCCCCceEEEEECC-----CCCHHH----------------HHHHHHHHHhcCCCEEEEEEe
Confidence 67889999999999998876656665543332 444431 123455677789999999999
Q ss_pred ccccchhhhhhccc--EEEEeCCceeecCCCCccCCCCchHHH-----------------HHHHhhC--HHHHHHHHHcC
Q 020093 175 YAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGSFDAGYGSS-----------------IMSRLVG--PKKAREMWFLA 233 (331)
Q Consensus 175 ~a~GgG~~Lal~cD--~~ia~~~a~f~~pe~~~Gl~p~~g~~~-----------------~L~r~vG--~~~a~~l~ltG 233 (331)
.|.++|.-++++|| .|++.+++.|.+-+...+.... ... .+....| .....+++-.+
T Consensus 77 ~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~--~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~ 154 (171)
T cd07017 77 LAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQ--ASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRD 154 (171)
T ss_pred EehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCC
Confidence 99999999999999 7999999999998876653221 111 0111122 23455666678
Q ss_pred CCCCHHHHHhcCcccEe
Q 020093 234 RFYTAEEAEKMGLVNTV 250 (331)
Q Consensus 234 ~~~~a~eA~~~GLv~~v 250 (331)
..++++||+++||||+|
T Consensus 155 ~~lta~EA~e~GiiD~V 171 (171)
T cd07017 155 RYMSAEEAKEYGLIDKI 171 (171)
T ss_pred ccccHHHHHHcCCCccC
Confidence 89999999999999975
No 110
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.62 E-value=2.5e-07 Score=87.78 Aligned_cols=135 Identities=24% Similarity=0.356 Sum_probs=94.5
Q ss_pred HHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcCccccc
Q 020093 100 VKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGG 179 (331)
Q Consensus 100 ~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~Gg 179 (331)
.+.+.+.|+.+..|++++.|||.=+-| |+.... ...+++.++++..-. ||++.|+++|.-|
T Consensus 82 ~~~~~~~l~~~~~~~~vk~vvL~inSP-----GG~v~a-------------s~~i~~~l~~l~~~~-PV~v~v~~~AASG 142 (317)
T COG0616 82 GDDIEEILRAARADPSVKAVVLRINSP-----GGSVVA-------------SELIARALKRLRAKK-PVVVSVGGYAASG 142 (317)
T ss_pred HHHHHHHHHHHhcCCCCceEEEEEECc-----CCchhH-------------HHHHHHHHHHHhhcC-CEEEEECCeecch
Confidence 456667777888899999999865443 443321 112334444444444 9999999999999
Q ss_pred hhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCH------------------------------------
Q 020093 180 GHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP------------------------------------ 223 (331)
Q Consensus 180 G~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~------------------------------------ 223 (331)
|+.++++||.+||++++..|--.+..+. | ....+....|.
T Consensus 143 GY~IA~aAd~I~a~p~si~GSIGVi~~~-~---~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~y 218 (317)
T COG0616 143 GYYIALAADKIVADPSSITGSIGVISGA-P---NFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDETY 218 (317)
T ss_pred hhhhhccCCEEEecCCceeeeceeEEec-C---CHHHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999875444442 2 23334444441
Q ss_pred --------------HHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHH
Q 020093 224 --------------KKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLE 257 (331)
Q Consensus 224 --------------~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~ 257 (331)
.....-+.+|+.+++++|++.||||++...++..
T Consensus 219 ~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av 266 (317)
T COG0616 219 DEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAV 266 (317)
T ss_pred HHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHHHH
Confidence 1134467789999999999999999997654433
No 111
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.61 E-value=6.2e-07 Score=80.02 Aligned_cols=137 Identities=20% Similarity=0.198 Sum_probs=98.0
Q ss_pred CCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEc
Q 020093 94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA 173 (331)
Q Consensus 94 al~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~ 173 (331)
.++.++..++...|..++..+..+.|+|.=+. .|+++.. ...++..|..++.||++.+.
T Consensus 43 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INS-----pGG~v~~----------------g~~I~d~i~~~~~~v~t~~~ 101 (207)
T PRK12553 43 QVDDASANDVMAQLLVLESIDPDRDITLYINS-----PGGSVTA----------------GDAIYDTIQFIRPDVQTVCT 101 (207)
T ss_pred eECHHHHHHHHHHHHHHHhCCCCCCEEEEEeC-----CCCcHHH----------------HHHHHHHHHhcCCCcEEEEE
Confidence 47899999999999999876544444443222 2444331 12456677888899999999
Q ss_pred Cccccchhhhhhccc--EEEEeCCceeecCCCCc-cCCCCchHH------------------HHHHHhhC--HHHHHHHH
Q 020093 174 GYAVGGGHVLHMVCD--LTIAADNAIFGQTGPKV-GSFDAGYGS------------------SIMSRLVG--PKKAREMW 230 (331)
Q Consensus 174 G~a~GgG~~Lal~cD--~~ia~~~a~f~~pe~~~-Gl~p~~g~~------------------~~L~r~vG--~~~a~~l~ 230 (331)
|.|.+.|.-|+++|| .|++.+++.|.+-.... |.. .|.. ..+.+..| .....+++
T Consensus 102 G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~--~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~ 179 (207)
T PRK12553 102 GQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGI--RGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDT 179 (207)
T ss_pred eehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCCC--ccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999999 59999999999977653 211 1111 11222233 34456677
Q ss_pred HcCCCCCHHHHHhcCcccEecCC
Q 020093 231 FLARFYTAEEAEKMGLVNTVVPL 253 (331)
Q Consensus 231 ltG~~~~a~eA~~~GLv~~vv~~ 253 (331)
-.+..++|+||+++||||+|+..
T Consensus 180 ~~~~~lta~EA~e~GliD~I~~~ 202 (207)
T PRK12553 180 DRDKWLTAEEAKDYGLVDQIITS 202 (207)
T ss_pred hcCccccHHHHHHcCCccEEcCc
Confidence 77899999999999999999965
No 112
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.51 E-value=1.8e-06 Score=76.46 Aligned_cols=138 Identities=17% Similarity=0.118 Sum_probs=92.2
Q ss_pred CCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcC
Q 020093 95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG 174 (331)
Q Consensus 95 l~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G 174 (331)
++..+...+...|..++..+..+.|+|.=+. .|+++.. ...++..|..++.||++.+.|
T Consensus 32 I~~~~~~~i~~~L~~l~~~~~~~~I~l~INS-----pGG~v~a----------------g~aI~d~i~~~~~~V~t~v~G 90 (197)
T PRK14512 32 INKDLSELFQEKILLLEALDSKKPIFVYIDS-----EGGDIDA----------------GFAIFNMIRFVKPKVFTIGVG 90 (197)
T ss_pred EcHHHHHHHHHHHHHHHhcCCCCCEEEEEEC-----CCCCHHH----------------HHHHHHHHHhCCCCEEEEEEe
Confidence 7788889999988887763333444443322 2444321 124556777889999999999
Q ss_pred ccccchhhhhhcccE--EEEeCCceeecCCCCccCCCCchHHH---------------HHHHhhC--HHHHHHHHHcCCC
Q 020093 175 YAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSFDAGYGSS---------------IMSRLVG--PKKAREMWFLARF 235 (331)
Q Consensus 175 ~a~GgG~~Lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~---------------~L~r~vG--~~~a~~l~ltG~~ 235 (331)
.|.+.|.-|+++||- |++.++++|-+-.+.-++.....-.. .+....| .....+++-....
T Consensus 91 ~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~~ 170 (197)
T PRK14512 91 LVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRDFW 170 (197)
T ss_pred eeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcCcc
Confidence 999999999999985 99999999977555433211110000 0111222 2334555555678
Q ss_pred CCHHHHHhcCcccEecCC
Q 020093 236 YTAEEAEKMGLVNTVVPL 253 (331)
Q Consensus 236 ~~a~eA~~~GLv~~vv~~ 253 (331)
++|+||+++||||+|++.
T Consensus 171 lta~EA~~yGliD~I~~~ 188 (197)
T PRK14512 171 LDSSSAVKYGLVFEVVET 188 (197)
T ss_pred cCHHHHHHcCCccEeecC
Confidence 999999999999999975
No 113
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=98.49 E-value=3.8e-07 Score=79.60 Aligned_cols=142 Identities=23% Similarity=0.315 Sum_probs=94.0
Q ss_pred EEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCee--EEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHH
Q 020093 84 ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVG--VIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQI 161 (331)
Q Consensus 84 ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~--~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l 161 (331)
|.|+.| ++.++...+...|..++..+..+ .|.|.+. |+|+.. ...++..|
T Consensus 19 i~l~g~-----I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSp-------GG~v~~----------------g~~i~~~i 70 (182)
T PF00574_consen 19 IFLNGP-----IDEESANRLISQLLYLENEDKNKPINIYINSP-------GGDVDA----------------GLAIYDAI 70 (182)
T ss_dssp EEEESS-----BSHHHHHHHHHHHHHHHHHTSSSEEEEEEEEC-------EBCHHH----------------HHHHHHHH
T ss_pred EEECCc-----cCHHHHHHHHHHHHHHhccCCCceEEEEEcCC-------CCccHH----------------HHHHHHHH
Confidence 455544 78999999999888774332222 2334443 444431 22466688
Q ss_pred HcCCCcEEEEEcCccccchhhhhhcccE--EEEeCCceeecCCCCccCCCCchHHH---------------HHHHhhC--
Q 020093 162 RRLPKPVIAMVAGYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSFDAGYGSS---------------IMSRLVG-- 222 (331)
Q Consensus 162 ~~~~kPvIAav~G~a~GgG~~Lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~---------------~L~r~vG-- 222 (331)
..++.|+++.+.|.|.+.|.-|.++||. |++.+++.|.+-++..+......-.. .+....|
T Consensus 71 ~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~ 150 (182)
T PF00574_consen 71 RSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLS 150 (182)
T ss_dssp HHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-
T ss_pred HhcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 8999999999999999999999999999 89999999999888766432110110 0111112
Q ss_pred HHHHHHHHHcCCCCCHHHHHhcCcccEecCC
Q 020093 223 PKKAREMWFLARFYTAEEAEKMGLVNTVVPL 253 (331)
Q Consensus 223 ~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~ 253 (331)
.....+++-....++++||+++||||+|+..
T Consensus 151 ~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 151 KEEIEELMDRDTWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS
T ss_pred HHHHHHHHhCCccccHHHHHHcCCCCEeccC
Confidence 2333444445567899999999999999853
No 114
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.46 E-value=2.5e-05 Score=71.74 Aligned_cols=140 Identities=20% Similarity=0.226 Sum_probs=93.0
Q ss_pred CCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 020093 92 RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM 171 (331)
Q Consensus 92 ~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAa 171 (331)
.-+++++-++...+.++.+++. ++=+|-|.=.++ ++. |.+-.+ ... ...+.+++..+.....|+|+.
T Consensus 76 ~G~~~~~g~rKa~R~~~lA~~~-~lPvV~lvDtpG-a~~-g~~aE~---------~G~-~~~ia~~~~~~s~~~VP~IsV 142 (256)
T PRK12319 76 FGQPHPEGYRKALRLMKQAEKF-GRPVVTFINTAG-AYP-GVGAEE---------RGQ-GEAIARNLMEMSDLKVPIIAI 142 (256)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCC-cCC-CHhHHh---------ccH-HHHHHHHHHHHhCCCCCEEEE
Confidence 4668888889888888888754 344555543331 342 332110 011 112445666778999999999
Q ss_pred EcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEec
Q 020093 172 VAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251 (331)
Q Consensus 172 v~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv 251 (331)
|-|.|.|||......||++++.+++.|+. +++-+.+..|-+-- .++.+. -.-..+++.++.+.|+||+|+
T Consensus 143 I~G~~~gGgA~a~~~~D~v~m~~~a~~~v-------~~pe~~a~il~~~~--~~a~~a-a~~~~~~a~~l~~~g~iD~ii 212 (256)
T PRK12319 143 IIGEGGSGGALALAVADQVWMLENTMYAV-------LSPEGFASILWKDG--SRATEA-AELMKITAGELLEMGVVDKVI 212 (256)
T ss_pred EeCCcCcHHHHHhhcCCEEEEecCceEEE-------cCHHHHHHHHhcCc--ccHHHH-HHHcCCCHHHHHHCCCCcEec
Confidence 99999999888888999999999998876 33344444444321 222221 112277999999999999999
Q ss_pred CCC
Q 020093 252 PLE 254 (331)
Q Consensus 252 ~~~ 254 (331)
+..
T Consensus 213 ~e~ 215 (256)
T PRK12319 213 PEH 215 (256)
T ss_pred CCC
Confidence 753
No 115
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=98.43 E-value=7.4e-06 Score=72.61 Aligned_cols=139 Identities=17% Similarity=0.127 Sum_probs=96.1
Q ss_pred CCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEc
Q 020093 94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA 173 (331)
Q Consensus 94 al~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~ 173 (331)
.++.++..++...|-.++.++..+-|.|.=+. .|+|+.. -..++..|...+.||...+.
T Consensus 38 ~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INS-----pGG~v~~----------------g~aIyd~m~~~~~~V~Tv~~ 96 (200)
T CHL00028 38 EVDDEIANQLIGLMVYLSIEDDTKDLYLFINS-----PGGSVIS----------------GLAIYDTMQFVKPDVHTICL 96 (200)
T ss_pred eecHHHHHHHHHHHHHHhccCCCCCEEEEEeC-----CCcchhh----------------HHHHHHHHHhcCCCEEEEEE
Confidence 38899999999999888754433444332222 2334321 12456678889999999999
Q ss_pred Cccccchhhhhhccc--EEEEeCCceeecCCCCccCCCCchHHH-----------------HHHHhhC--HHHHHHHHHc
Q 020093 174 GYAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGSFDAGYGSS-----------------IMSRLVG--PKKAREMWFL 232 (331)
Q Consensus 174 G~a~GgG~~Lal~cD--~~ia~~~a~f~~pe~~~Gl~p~~g~~~-----------------~L~r~vG--~~~a~~l~lt 232 (331)
|.|.+.|.-|.+++| -|++.++++|.+-....|..- +-... .+....| .....+++-.
T Consensus 97 G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~-G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~~r 175 (200)
T CHL00028 97 GLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYE-GQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDMER 175 (200)
T ss_pred EehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhc
Confidence 999999999999999 699999999998777655221 11111 1111222 2334555566
Q ss_pred CCCCCHHHHHhcCcccEecCCC
Q 020093 233 ARFYTAEEAEKMGLVNTVVPLE 254 (331)
Q Consensus 233 G~~~~a~eA~~~GLv~~vv~~~ 254 (331)
...++|+||+++||||+|+.+.
T Consensus 176 ~~~lta~EA~eyGliD~I~~~~ 197 (200)
T CHL00028 176 DVFMSATEAKAYGIVDLVAVNN 197 (200)
T ss_pred CccCCHHHHHHcCCCcEEeecC
Confidence 6789999999999999998653
No 116
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.40 E-value=2.6e-05 Score=73.44 Aligned_cols=139 Identities=14% Similarity=0.177 Sum_probs=93.2
Q ss_pred CCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 020093 92 RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM 171 (331)
Q Consensus 92 ~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAa 171 (331)
.-.++++-++...+.++.++.. .+=+|-|.-.+ .+++ |.+-.+. .. ...+......+.....|+|++
T Consensus 132 ~G~~~p~g~rKa~Rlm~lA~~f-~lPIItlvDTp-GA~~-G~~AE~~---------G~-~~aiar~l~~~a~~~VP~IsV 198 (322)
T CHL00198 132 FGMPSPGGYRKALRLMKHANKF-GLPILTFIDTP-GAWA-GVKAEKL---------GQ-GEAIAVNLREMFSFEVPIICT 198 (322)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCC-CcCc-CHHHHHH---------hH-HHHHHHHHHHHHcCCCCEEEE
Confidence 4678899999999998888765 34444443333 1443 3222110 01 112345555678899999999
Q ss_pred EcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEec
Q 020093 172 VAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251 (331)
Q Consensus 172 v~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv 251 (331)
|-|.|.|||.-....||++++.+++.|+. +++-|.+..|.+- ..+|.+. ...-.++|++.+++|+||+|+
T Consensus 199 ViGeggsGGAlal~~aD~V~m~e~a~~sV-------isPEg~a~Il~~d--~~~a~~a-A~~~~ita~dL~~~giiD~ii 268 (322)
T CHL00198 199 IIGEGGSGGALGIGIGDSIMMLEYAVYTV-------ATPEACAAILWKD--SKKSLDA-AEALKITSEDLKVLGIIDEII 268 (322)
T ss_pred EeCcccHHHHHhhhcCCeEEEeCCeEEEe-------cCHHHHHHHHhcc--hhhHHHH-HHHcCCCHHHHHhCCCCeEec
Confidence 99999888865555699999999998876 3344445555443 3344432 334689999999999999999
Q ss_pred CC
Q 020093 252 PL 253 (331)
Q Consensus 252 ~~ 253 (331)
|.
T Consensus 269 ~E 270 (322)
T CHL00198 269 PE 270 (322)
T ss_pred cC
Confidence 74
No 117
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=98.39 E-value=8.5e-06 Score=71.79 Aligned_cols=138 Identities=17% Similarity=0.154 Sum_probs=92.7
Q ss_pred CCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEc
Q 020093 94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA 173 (331)
Q Consensus 94 al~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~ 173 (331)
.++.++..++...|..++.++..+-|+|.=+. .|+|+.. -..++..|..++.||...+.
T Consensus 34 ~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InS-----pGG~v~~----------------g~~I~d~l~~~~~~v~t~~~ 92 (191)
T TIGR00493 34 EVNDSVANLIVAQLLFLEAEDPEKDIYLYINS-----PGGSITA----------------GLAIYDTMQFIKPDVSTICI 92 (191)
T ss_pred EEChHHHHHHHHHHHHhhccCCCCCEEEEEEC-----CCCCHHH----------------HHHHHHHHHhcCCCEEEEEE
Confidence 37788888888888888865544445443322 2444421 12345567777778888889
Q ss_pred Cccccchhhhhhccc--EEEEeCCceeecCCCCccCCCCchHH---------------HHHHHhhC--HHHHHHHHHcCC
Q 020093 174 GYAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGSFDAGYGS---------------SIMSRLVG--PKKAREMWFLAR 234 (331)
Q Consensus 174 G~a~GgG~~Lal~cD--~~ia~~~a~f~~pe~~~Gl~p~~g~~---------------~~L~r~vG--~~~a~~l~ltG~ 234 (331)
|.|.+.|.-|++++| .|++.++++|.+-++..|......-. ..+.+..| .....+++-.+.
T Consensus 93 G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~ 172 (191)
T TIGR00493 93 GQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERDF 172 (191)
T ss_pred EeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCc
Confidence 999999999988766 69999999999977654321111111 01222333 244556667778
Q ss_pred CCCHHHHHhcCcccEecC
Q 020093 235 FYTAEEAEKMGLVNTVVP 252 (331)
Q Consensus 235 ~~~a~eA~~~GLv~~vv~ 252 (331)
.++|+||+++||||+|+.
T Consensus 173 ~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 173 FMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred cCcHHHHHHcCCccEEec
Confidence 999999999999999974
No 118
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=98.38 E-value=2e-05 Score=76.05 Aligned_cols=138 Identities=19% Similarity=0.184 Sum_probs=90.0
Q ss_pred CCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEE
Q 020093 93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV 172 (331)
Q Consensus 93 Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav 172 (331)
.+++++-++...+.++.++.. ++=+|-|.=..+ ++ .|.+-.+. . ....+...+..+....+|+|+.|
T Consensus 200 G~~~peGyRKAlR~mklAekf-~lPIVtLVDTpG-A~-pG~~AEe~---------G-qa~aIAr~l~ams~l~VPiISVV 266 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEKF-GFPILTFVDTPG-AY-AGIKAEEL---------G-QGEAIAFNLREMFGLRVPIIATV 266 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCC-cC-CCHHHHHH---------h-HHHHHHHHHHHHhcCCCCEEEEE
Confidence 568899999999998888764 444555543331 33 33322211 0 11124456667889999999999
Q ss_pred cCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEecC
Q 020093 173 AGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252 (331)
Q Consensus 173 ~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~ 252 (331)
-|.+.+||.-...+||++++.+++.++. +++-+.+..|.+-- .+|.+.. ..-.++++++++.|+||+|++
T Consensus 267 iGeGgSGGAlalg~aD~VlMle~A~ysV-------isPEgaAsILwkd~--~~A~eAA-ealkitA~dL~~~GiID~II~ 336 (431)
T PLN03230 267 IGEGGSGGALAIGCGNRMLMMENAVYYV-------ASPEACAAILWKSA--AAAPKAA-EALRITAAELVKLGVVDEIVP 336 (431)
T ss_pred eCCCCcHHHHHhhcCCEEEEecCCEEEe-------cCHHHHHHHHhccc--cchHHHH-HHcCCCHHHHHhCCCCeEecc
Confidence 9999666654445789999999998775 33333444444321 1222221 234899999999999999997
Q ss_pred C
Q 020093 253 L 253 (331)
Q Consensus 253 ~ 253 (331)
.
T Consensus 337 E 337 (431)
T PLN03230 337 E 337 (431)
T ss_pred C
Confidence 4
No 119
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=98.37 E-value=1.4e-05 Score=73.03 Aligned_cols=95 Identities=21% Similarity=0.424 Sum_probs=77.4
Q ss_pred CCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEE
Q 020093 93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV 172 (331)
Q Consensus 93 Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav 172 (331)
+.++.+..+++.++++...++..+-.+ |...| +++.. -.++...|.+++.++++.|
T Consensus 70 ~~I~i~dse~v~raI~~~~~~~~IdLi-i~TpG-------G~v~A----------------A~~I~~~l~~~~~~v~v~V 125 (285)
T PF01972_consen 70 RYIDIDDSEFVLRAIREAPKDKPIDLI-IHTPG-------GLVDA----------------AEQIARALREHPAKVTVIV 125 (285)
T ss_pred eeEcHhhHHHHHHHHHhcCCCCceEEE-EECCC-------CcHHH----------------HHHHHHHHHhCCCCEEEEE
Confidence 678999999999999999877665444 44333 33321 2245667889999999999
Q ss_pred cCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCc
Q 020093 173 AGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAG 211 (331)
Q Consensus 173 ~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~ 211 (331)
+..|+.+|.-|+++||-+++.+++.+|-.+..+|-.|..
T Consensus 126 P~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~ 164 (285)
T PF01972_consen 126 PHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAA 164 (285)
T ss_pred CcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChH
Confidence 999999999999999999999999999999999988754
No 120
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.30 E-value=5.1e-05 Score=71.41 Aligned_cols=139 Identities=19% Similarity=0.194 Sum_probs=91.9
Q ss_pred CCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 020093 92 RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM 171 (331)
Q Consensus 92 ~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAa 171 (331)
.-+++++-++...+.++.++.. ++=+|-|.-.++ +++ |.+-.+.. . ...+..++..+.....|+|++
T Consensus 129 ~G~~~p~g~rKa~R~m~lA~~f-~iPvVtlvDTpG-a~~-g~~aE~~G---------~-~~aia~~l~a~s~~~VP~IsV 195 (316)
T TIGR00513 129 FGMPAPEGYRKALRLMKMAERF-KMPIITFIDTPG-AYP-GIGAEERG---------Q-SEAIARNLREMARLGVPVICT 195 (316)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCC-CCC-CHHHHHHH---------H-HHHHHHHHHHHHcCCCCEEEE
Confidence 4678899999998888888754 445555544332 333 33222110 1 112445666778999999999
Q ss_pred EcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEec
Q 020093 172 VAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251 (331)
Q Consensus 172 v~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv 251 (331)
|-|.|.|||.-....||++++.+++.++. +++-|.+..|-+- ..++.+..- -..+++.++.+.|+||+|+
T Consensus 196 ViGeggsGGAla~~~aD~v~m~~~a~~sV-------isPEg~a~Il~kd--~~~a~~aae-~~~~ta~~l~~~G~iD~II 265 (316)
T TIGR00513 196 VIGEGGSGGALAIGVGDKVNMLEYSTYSV-------ISPEGCAAILWKD--ASKAPKAAE-AMKITAPDLKELGLIDSII 265 (316)
T ss_pred EecccccHHHhhhccCCEEEEecCceEEe-------cCHHHHHHHhccc--hhhHHHHHH-HccCCHHHHHHCCCCeEec
Confidence 99999777775555699999999998775 3444445555442 122222222 2677899999999999999
Q ss_pred CC
Q 020093 252 PL 253 (331)
Q Consensus 252 ~~ 253 (331)
|.
T Consensus 266 ~e 267 (316)
T TIGR00513 266 PE 267 (316)
T ss_pred cC
Confidence 74
No 121
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=98.30 E-value=5e-05 Score=71.58 Aligned_cols=139 Identities=20% Similarity=0.235 Sum_probs=94.8
Q ss_pred CCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 020093 92 RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM 171 (331)
Q Consensus 92 ~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAa 171 (331)
.-+++++-++...+.++.++.. ++=+|-|.=..+ +++ |.+-.+. .. ...+..++..+.....|+|+.
T Consensus 129 ~G~~~peg~rKa~R~m~lA~~f-~lPIVtlvDTpG-a~~-G~~aE~~---------G~-~~aia~~l~~~a~~~VP~IsV 195 (319)
T PRK05724 129 FGMPRPEGYRKALRLMKMAEKF-GLPIITFIDTPG-AYP-GIGAEER---------GQ-SEAIARNLREMARLKVPIICT 195 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCC-CCC-CHHHHhc---------cH-HHHHHHHHHHHhCCCCCEEEE
Confidence 4568899999888888887754 455555544432 333 4322210 01 113446667788999999999
Q ss_pred EcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEec
Q 020093 172 VAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251 (331)
Q Consensus 172 v~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv 251 (331)
|-|.|.|||.-....||++++.+++.|+. +++-|.+..|.+- ..++.+..- ...++++++.+.|+||+|+
T Consensus 196 IiGeg~sGGAla~~~aD~v~m~~~A~~sv-------isPEg~a~Il~~~--~~~a~~aae-~~~ita~~l~~~g~iD~II 265 (319)
T PRK05724 196 VIGEGGSGGALAIGVGDRVLMLEYSTYSV-------ISPEGCASILWKD--ASKAPEAAE-AMKITAQDLKELGIIDEII 265 (319)
T ss_pred EeCCccHHHHHHHhccCeeeeecCceEee-------cCHHHHHHHHhcC--chhHHHHHH-HcCCCHHHHHHCCCceEec
Confidence 99999887775555699999999998775 4444555555543 233443333 5678999999999999999
Q ss_pred CC
Q 020093 252 PL 253 (331)
Q Consensus 252 ~~ 253 (331)
|.
T Consensus 266 ~E 267 (319)
T PRK05724 266 PE 267 (319)
T ss_pred cC
Confidence 74
No 122
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=98.28 E-value=1.7e-05 Score=81.29 Aligned_cols=86 Identities=19% Similarity=0.204 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcCccc
Q 020093 98 HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177 (331)
Q Consensus 98 ~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~ 177 (331)
..+.++.++|+.+.+|+.|++|||.-.+. .|+++..+ ..+.+.+..+....|||||..++++
T Consensus 76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~~----~g~~~~~~-------------~ei~~ai~~fk~sgKpVvA~~~~~~- 137 (584)
T TIGR00705 76 ISLFDIVNAIRQAADDRRIEGLVFDLSNF----SGWDSPHL-------------VEIGSALSEFKDSGKPVYAYGTNYS- 137 (584)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEccCC----CCCCHHHH-------------HHHHHHHHHHHhcCCeEEEEEcccc-
Confidence 35679999999999999999999987542 23333211 1133445566677899999988875
Q ss_pred cchhhhhhcccEEEEeCCceeecC
Q 020093 178 GGGHVLHMVCDLTIAADNAIFGQT 201 (331)
Q Consensus 178 GgG~~Lal~cD~~ia~~~a~f~~p 201 (331)
-+|+-|+.+||-+++.+.+.+++.
T Consensus 138 s~~YylAs~AD~I~~~p~G~v~~~ 161 (584)
T TIGR00705 138 QGQYYLASFADEIILNPMGSVDLH 161 (584)
T ss_pred chhhhhhhhCCEEEECCCceEEee
Confidence 678999999999999998888664
No 123
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=98.26 E-value=8.8e-07 Score=75.34 Aligned_cols=103 Identities=21% Similarity=0.298 Sum_probs=64.5
Q ss_pred HHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccC---------------------CCCc-----hHH
Q 020093 161 IRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGS---------------------FDAG-----YGS 214 (331)
Q Consensus 161 l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl---------------------~p~~-----g~~ 214 (331)
+....|||||.++|.|..+|+-|+++||-+++.+.+.++...+.... .-.. ..+
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s 81 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS 81 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC
Confidence 35678999999999999999999999999999999988875322111 0011 000
Q ss_pred ----HHHHHhhC-----------HHH-----HHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHH
Q 020093 215 ----SIMSRLVG-----------PKK-----AREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKW 263 (331)
Q Consensus 215 ----~~L~r~vG-----------~~~-----a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~ 263 (331)
..+.+++. ..| ..+-++.|..+++++|++.||||++...+++...+.+.
T Consensus 82 ~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~~ 150 (154)
T PF01343_consen 82 EEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTFDEAIARLAKL 150 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCHHHHHHHHHHH
Confidence 11111111 111 22336789999999999999999998777665554443
No 124
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.25 E-value=2.5e-05 Score=68.96 Aligned_cols=140 Identities=15% Similarity=0.123 Sum_probs=94.3
Q ss_pred CCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEc
Q 020093 94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA 173 (331)
Q Consensus 94 al~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~ 173 (331)
.++.++..++...|..++.+...+-|.+.=+. .|+|+.. ...++..|..++-||...+.
T Consensus 33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INS-----pGG~v~~----------------g~aIyd~m~~~~~~V~t~~~ 91 (196)
T PRK12551 33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYINS-----PGGSVYD----------------GLGIFDTMQHVKPDVHTVCV 91 (196)
T ss_pred eecHHHHHHHHHHHHHhhccCCCCCEEEEEeC-----CCcchhh----------------HHHHHHHHHhcCCCEEEEEE
Confidence 38899999999999988754433434333222 2444331 12455677888999999999
Q ss_pred CccccchhhhhhcccE--EEEeCCceeecCCCCccCCCCchHHH---------------HHHHhhCH--HHHHHHHHcCC
Q 020093 174 GYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSFDAGYGSS---------------IMSRLVGP--KKAREMWFLAR 234 (331)
Q Consensus 174 G~a~GgG~~Lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~---------------~L~r~vG~--~~a~~l~ltG~ 234 (331)
|.|.+.|.-|++++|. |++.++++|.+-.+.-|......-.. .+.+..|. ....+++-.-.
T Consensus 92 G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~rd~ 171 (196)
T PRK12551 92 GLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDRDF 171 (196)
T ss_pred EEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCc
Confidence 9999999999999985 88999999998776543221110011 01222232 23445555567
Q ss_pred CCCHHHHHhcCcccEecCCC
Q 020093 235 FYTAEEAEKMGLVNTVVPLE 254 (331)
Q Consensus 235 ~~~a~eA~~~GLv~~vv~~~ 254 (331)
.++|+||+++||||+|++..
T Consensus 172 ~msa~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 172 FMSPSEAVEYGLIDLVIDKR 191 (196)
T ss_pred CCCHHHHHHcCCCcEEeccC
Confidence 89999999999999999753
No 125
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.21 E-value=3.3e-05 Score=69.34 Aligned_cols=136 Identities=15% Similarity=0.141 Sum_probs=91.6
Q ss_pred CCCHHHHHHHHHHHHhcccC---CCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEE
Q 020093 94 AFRPHTVKELIRAFNDARDD---SSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIA 170 (331)
Q Consensus 94 al~~~~~~eL~~al~~~~~d---~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIA 170 (331)
.++..+...+...|..++.. .+|.+. |-+.| +++.. ...++..|...+-||..
T Consensus 62 ~Idd~~a~~i~aqLl~L~~~~~~~~I~ly-INSpG-------Gsv~a----------------GlaIyd~m~~~~~~V~t 117 (221)
T PRK14514 62 QIDDYTANTIQAQLLYLDSVDPGKDISIY-INSPG-------GSVYA----------------GLGIYDTMQFISSDVAT 117 (221)
T ss_pred EEcHHHHHHHHHHHHHHhccCCCCCEEEE-EECCC-------cchhh----------------HHHHHHHHHhcCCCEEE
Confidence 47888888888877666543 333333 34444 33221 12355677888999999
Q ss_pred EEcCccccchhhhhhcccE--EEEeCCceeecCCCCccCCCCchHH----H-----------HHHHhhCH--HHHHHHHH
Q 020093 171 MVAGYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSFDAGYGS----S-----------IMSRLVGP--KKAREMWF 231 (331)
Q Consensus 171 av~G~a~GgG~~Lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~~----~-----------~L~r~vG~--~~a~~l~l 231 (331)
.+.|.|.+.|.-|++++|. |++.++++|.+-...-|......-. . .+.+..|. ....+.+-
T Consensus 118 v~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~ 197 (221)
T PRK14514 118 ICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSD 197 (221)
T ss_pred EEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhh
Confidence 9999999999999999996 9999999999877654432111000 0 01122232 33445556
Q ss_pred cCCCCCHHHHHhcCcccEecCC
Q 020093 232 LARFYTAEEAEKMGLVNTVVPL 253 (331)
Q Consensus 232 tG~~~~a~eA~~~GLv~~vv~~ 253 (331)
....++|+||+++||||+|+..
T Consensus 198 rd~wmtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 198 RDYWMTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred cCccCCHHHHHHcCCccEEeec
Confidence 6778999999999999999853
No 126
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=98.21 E-value=0.00011 Score=75.41 Aligned_cols=139 Identities=15% Similarity=0.156 Sum_probs=93.1
Q ss_pred CCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 020093 92 RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM 171 (331)
Q Consensus 92 ~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAa 171 (331)
.-+++++-++-..+.++.++.. .+=+|-|.=.++ +++ |.+..+.. ....+...+..+.....|+|++
T Consensus 220 fG~~~peGyRKAlRlmkLAekf-gLPIVtLVDTpG-A~p-G~~AEe~G----------q~~aIArnl~amasl~VP~ISV 286 (762)
T PLN03229 220 FGMPTPHGYRKALRMMYYADHH-GFPIVTFIDTPG-AYA-DLKSEELG----------QGEAIAHNLRTMFGLKVPIVSI 286 (762)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCC-cCC-CchhHHHh----------HHHHHHHHHHHHhCCCCCEEEE
Confidence 4577888888888888877754 344444433221 343 32222211 1112445666778999999999
Q ss_pred EcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEec
Q 020093 172 VAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251 (331)
Q Consensus 172 v~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv 251 (331)
|-|.|.|||.-....||++++.++++|+. .++-|++..|.+- ..+|.+ +...-.++|++.+++|+||+|+
T Consensus 287 ViGeggSGGAlA~g~aD~VlMle~A~~sV-------isPEgaAsILwkd--~~~A~e-AAe~lkiTa~dL~~lGiiD~II 356 (762)
T PLN03229 287 VIGEGGSGGALAIGCANKLLMLENAVFYV-------ASPEACAAILWKS--AKAAPK-AAEKLRITAQELCRLQIADGII 356 (762)
T ss_pred EeCCcchHHHHHhhcCCEEEEecCCeEEe-------cCHHHHHHHHhcC--cccHHH-HHHHcCCCHHHHHhCCCCeeec
Confidence 99999888887777899999999987765 3334445555443 223333 3345689999999999999999
Q ss_pred CC
Q 020093 252 PL 253 (331)
Q Consensus 252 ~~ 253 (331)
|.
T Consensus 357 pE 358 (762)
T PLN03229 357 PE 358 (762)
T ss_pred cC
Confidence 84
No 127
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.15 E-value=5.7e-05 Score=66.92 Aligned_cols=136 Identities=19% Similarity=0.249 Sum_probs=94.5
Q ss_pred CCCHHHHHHHHHHHHhcccCC---CeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEE
Q 020093 94 AFRPHTVKELIRAFNDARDDS---SVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIA 170 (331)
Q Consensus 94 al~~~~~~eL~~al~~~~~d~---~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIA 170 (331)
.++.++-..+...|..++.++ +|.+. |-+.| +|+.. -..++..|...+-||..
T Consensus 35 ~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~-INSpG-------G~v~~----------------GlaIyd~m~~~~~~V~T 90 (201)
T PRK14513 35 PIESQMANTIVAQLLLLDSQNPEQEIQMY-INCPG-------GEVYA----------------GLAIYDTMRYIKAPVST 90 (201)
T ss_pred EEcHHHHHHHHHHHHHhhccCCCCCEEEE-EECCC-------Cchhh----------------HHHHHHHHHhcCCCEEE
Confidence 488899999988887777543 33333 34444 33321 12456678888999999
Q ss_pred EEcCccccchhhhhhcccE--EEEeCCceeecCCCCccCCCCchHHHH-----------------HHHhhC--HHHHHHH
Q 020093 171 MVAGYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSFDAGYGSSI-----------------MSRLVG--PKKAREM 229 (331)
Q Consensus 171 av~G~a~GgG~~Lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~-----------------L~r~vG--~~~a~~l 229 (331)
.+.|.|.+.|.-|++++|- |++.+++++-+-.+..|.. +..... +.+..| ...-.++
T Consensus 91 i~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~--G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~ 168 (201)
T PRK14513 91 ICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFR--GNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRD 168 (201)
T ss_pred EEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 9999999999999999996 9999999999877765531 111211 122223 2334455
Q ss_pred HHcCCCCCHHHHHhcCcccEecCCCc
Q 020093 230 WFLARFYTAEEAEKMGLVNTVVPLEK 255 (331)
Q Consensus 230 ~ltG~~~~a~eA~~~GLv~~vv~~~~ 255 (331)
+-....++|+||+++||||+|+++.+
T Consensus 169 ~~rd~~msa~EA~eyGliD~I~~~~~ 194 (201)
T PRK14513 169 MERDYFMSPEEAKAYGLIDSVIEPTR 194 (201)
T ss_pred hccCcccCHHHHHHcCCCcEEeccCC
Confidence 55567899999999999999997543
No 128
>PRK10949 protease 4; Provisional
Probab=98.02 E-value=7.1e-05 Score=76.95 Aligned_cols=86 Identities=20% Similarity=0.262 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcCccc
Q 020093 98 HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177 (331)
Q Consensus 98 ~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~ 177 (331)
-.+.++.++|+++.+|+.|++|||.-.+. .|..+.. ...+.+.+..++...|||||.-+.+ .
T Consensus 95 ~~l~div~~i~~Aa~D~rIkgivL~i~s~----gG~~~a~-------------~~eI~~ai~~fk~sGKpVvA~~~~~-~ 156 (618)
T PRK10949 95 NSLFDIVNTIRQAKDDRNITGIVLDLKNF----AGADQPS-------------MQYIGKALREFRDSGKPVYAVGDSY-S 156 (618)
T ss_pred ccHHHHHHHHHHHhcCCCceEEEEEeCCC----CCccHHH-------------HHHHHHHHHHHHHhCCeEEEEecCc-c
Confidence 44678999999999999999999988653 1222211 0123345556677789999964444 5
Q ss_pred cchhhhhhcccEEEEeCCceeecC
Q 020093 178 GGGHVLHMVCDLTIAADNAIFGQT 201 (331)
Q Consensus 178 GgG~~Lal~cD~~ia~~~a~f~~p 201 (331)
-+++-|+.+||-+++.+.+.+++.
T Consensus 157 s~~YyLASaAD~I~l~P~G~v~~~ 180 (618)
T PRK10949 157 QGQYYLASFANKIYLSPQGVVDLH 180 (618)
T ss_pred chhhhhhhhCCEEEECCCceEEEe
Confidence 678999999999999999887764
No 129
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=97.98 E-value=0.0004 Score=64.33 Aligned_cols=151 Identities=17% Similarity=0.240 Sum_probs=90.0
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccC----CCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDD----SSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 81 v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d----~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
|+++-.+.-=..-++....-+.+..+++.+.+| ..+-+|.|.-.| |..+.+-. ..... ...+..
T Consensus 61 v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSg------GaRlqEg~----~~L~~--~a~i~~ 128 (274)
T TIGR03133 61 VVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTG------GVRLQEAN----AGLIA--IAEIMR 128 (274)
T ss_pred EEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCC------CcChhhhH----HHHHH--HHHHHH
Confidence 555555444455678888888888888887652 123355554433 33343210 00000 011122
Q ss_pred HHHHHHcCCCcEEEEEcCc--cccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCH--HHHHHHHHc
Q 020093 157 LQVQIRRLPKPVIAMVAGY--AVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP--KKAREMWFL 232 (331)
Q Consensus 157 l~~~l~~~~kPvIAav~G~--a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~--~~a~~l~lt 232 (331)
....+... .|+|+.|.|+ |+||+..++.+||++|+++++++++....+ .-...|. --..+--|.
T Consensus 129 ~~~~ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aGP~V-----------Ie~~~G~e~~~~~d~~l~ 196 (274)
T TIGR03133 129 AILDARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSGPEV-----------IEQEAGVEEFDSRDRALV 196 (274)
T ss_pred HHHHHhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccCHHH-----------HHHhcCCCccCHHHhccc
Confidence 22334444 9999999999 899999999999999999998888732211 1111221 112222333
Q ss_pred CCCCCHHHHHhcCcccEecCCCc
Q 020093 233 ARFYTAEEAEKMGLVNTVVPLEK 255 (331)
Q Consensus 233 G~~~~a~eA~~~GLv~~vv~~~~ 255 (331)
-+.+.+......|++|.++++|.
T Consensus 197 ~~~lGG~~~~~sG~~D~~v~dd~ 219 (274)
T TIGR03133 197 WRTTGGKHRFLSGDADVLVEDDV 219 (274)
T ss_pred ccccchHhHhhcccceEEeCCHH
Confidence 34566677888999999998743
No 130
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.90 E-value=0.00038 Score=64.90 Aligned_cols=162 Identities=19% Similarity=0.245 Sum_probs=102.7
Q ss_pred CCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 78 GEG-IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 78 ~~~-v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
++. |+++..|.--..-+++....+.+.++++.+.+. .+=+|.|...|+ + -+.+ +.... ........
T Consensus 118 ~G~~V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dSgG-a-----RmqE----g~~sL--~~~ak~~~ 184 (285)
T TIGR00515 118 YGMPIVVAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSASGG-A-----RMQE----ALLSL--MQMAKTSA 184 (285)
T ss_pred CCEEEEEEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCC-c-----cccc----chhHH--HhHHHHHH
Confidence 444 444444433356789999999999999888654 566777766553 2 2211 00000 00111222
Q ss_pred HHHHHHcCCCcEEEEEcCccccchh-hhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCC
Q 020093 157 LQVQIRRLPKPVIAMVAGYAVGGGH-VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARF 235 (331)
Q Consensus 157 l~~~l~~~~kPvIAav~G~a~GgG~-~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~ 235 (331)
...++.....|.|+++.|+|.||+. ..++.+|++|+.++|.+++...++ +-..+|.. +.-+.
T Consensus 185 ~~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGprV-----------ie~ti~e~------lpe~~ 247 (285)
T TIGR00515 185 ALAKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPRV-----------IEQTVREK------LPEGF 247 (285)
T ss_pred HHHHHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHHH-----------HHHHhcCc------cchhc
Confidence 3345667789999999999999965 466799999999999888743321 11222211 11112
Q ss_pred CCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhc
Q 020093 236 YTAEEAEKMGLVNTVVPLEKLEQETIKWSREILR 269 (331)
Q Consensus 236 ~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~ 269 (331)
-+++-+.+.|+||.|+++.++.+...++.+.+..
T Consensus 248 q~ae~~~~~G~vD~iv~~~~~r~~l~~~L~~~~~ 281 (285)
T TIGR00515 248 QTSEFLLEHGAIDMIVHRPEMKKTLASLLAKLQN 281 (285)
T ss_pred CCHHHHHhCCCCcEEECcHHHHHHHHHHHHHHhh
Confidence 3556677899999999999998888777765543
No 131
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=97.89 E-value=0.00049 Score=62.61 Aligned_cols=168 Identities=17% Similarity=0.194 Sum_probs=99.9
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhc-ccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDA-RDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 78 ~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~-~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
++.-..|.=|.|.. .|+.+-...+...+..+ +.+.++=+|.|.=.. .|-.|..-++.. . ...+..
T Consensus 30 ~G~~V~vIa~~~~~--~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtp--G~~~g~~aE~~G---------~-~~a~A~ 95 (238)
T TIGR03134 30 AGGKVTVIGVVPDA--EVGLDEALALAQAVLDVIEADDKRPIVVLVDTP--SQAYGRREELLG---------I-NQALAH 95 (238)
T ss_pred CCEEEEEEEECCCC--cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCC--CCCCCHHHHHHH---------H-HHHHHH
Confidence 45545555566653 68877777777777774 555676677776543 244443222111 1 112233
Q ss_pred HHHHH---HcCCCcEEEEEcCccccchh-hhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHc
Q 020093 157 LQVQI---RRLPKPVIAMVAGYAVGGGH-VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFL 232 (331)
Q Consensus 157 l~~~l---~~~~kPvIAav~G~a~GgG~-~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~lt 232 (331)
+...+ ...+.|+|+.|-|.+.|||+ .+.+.+|.++|-+++.++. .+.-+++..+.+-. ..+.++.-.
T Consensus 96 l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i~v-------m~~e~aa~I~~~~~--~~~~e~a~~ 166 (238)
T TIGR03134 96 LAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAMVHV-------MDLESMARVTKRSV--EELEALAKS 166 (238)
T ss_pred HHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcEEEe-------cCHHHHHHHHccCH--hHHHHHHHh
Confidence 33444 45669999999999999886 4444589988887776654 44444444444433 233343332
Q ss_pred C--CCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHh
Q 020093 233 A--RFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREIL 268 (331)
Q Consensus 233 G--~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la 268 (331)
- ...+.+.+.++|+||+|+++.+-+..+.++++-+.
T Consensus 167 ~~~~a~~~~~~~~~G~vd~vi~~~~~~~~~~~~~~~~~ 204 (238)
T TIGR03134 167 SPVFAPGIENFVKLGGVHALLDVADADAPAAQLAAVLA 204 (238)
T ss_pred hhhhccCHHHHHhCCCccEEeCCCCcccHHHHHHHHHH
Confidence 2 24677789999999999987553333344444433
No 132
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=97.88 E-value=0.00049 Score=64.45 Aligned_cols=165 Identities=17% Similarity=0.245 Sum_probs=106.2
Q ss_pred CCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 78 GEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 78 ~~~v~~ItLnrp~-~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
+|.-..|.-|.|. ..-+++...-+.+.++++.+... .+=+|.|.-.| |..+.+ +.... ........
T Consensus 119 ~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~dsg------GarmqE----gi~sL--~~~ak~~~ 185 (292)
T PRK05654 119 EGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSASG------GARMQE----GLLSL--MQMAKTSA 185 (292)
T ss_pred CCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC------Ccchhh----hhhHH--HhHHHHHH
Confidence 5554445555554 56789999999999999888765 46677776555 222221 00000 00111222
Q ss_pred HHHHHHcCCCcEEEEEcCccccchh-hhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCC
Q 020093 157 LQVQIRRLPKPVIAMVAGYAVGGGH-VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARF 235 (331)
Q Consensus 157 l~~~l~~~~kPvIAav~G~a~GgG~-~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~ 235 (331)
.+.++.....|.|++|.|+|.||+. ..++.+|++|+.++|.+++...++ +...+|.. + .-+.
T Consensus 186 a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGprv-----------ie~~~~e~----l--pe~~ 248 (292)
T PRK05654 186 ALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPRV-----------IEQTVREK----L--PEGF 248 (292)
T ss_pred HHHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHHH-----------HHhhhhhh----h--hhhh
Confidence 3345667789999999999999965 457789999999999888733211 11112211 1 1123
Q ss_pred CCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCH
Q 020093 236 YTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSP 272 (331)
Q Consensus 236 ~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~ 272 (331)
-+++-+.+.|+||.|+++.++.....++.+.+...++
T Consensus 249 ~~ae~~~~~G~vD~Vv~~~e~r~~l~~~L~~~~~~~~ 285 (292)
T PRK05654 249 QRAEFLLEHGAIDMIVHRRELRDTLASLLALHTKQPA 285 (292)
T ss_pred cCHHHHHhCCCCcEEECHHHHHHHHHHHHHHHhcCCC
Confidence 3566678899999999999999888888887665543
No 133
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.00061 Score=66.29 Aligned_cols=149 Identities=22% Similarity=0.302 Sum_probs=108.1
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHH
Q 020093 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL 157 (331)
Q Consensus 78 ~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l 157 (331)
+..|.+|.++ +.+++.+.+.+.++++.++++. ..+|||.=+-| |+=+ ....++
T Consensus 25 ~~~v~vi~i~-----g~I~~~s~~~l~r~l~~A~~~~-a~~vvl~ldTP-----GGl~----------------~sm~~i 77 (436)
T COG1030 25 EKKVYVIEID-----GAIDPASADYLQRALQSAEEEN-AAAVVLELDTP-----GGLL----------------DSMRQI 77 (436)
T ss_pred CCeEEEEEec-----CccCHHHHHHHHHHHHHHHhCC-CcEEEEEecCC-----CchH----------------HHHHHH
Confidence 5568888886 6699999999999999998764 34555543322 2111 124578
Q ss_pred HHHHHcCCCcEEEEE---cCccccchhhhhhcccEEEEeCCceeecCCCCccC---CCCch-HHHHHHHh------hC--
Q 020093 158 QVQIRRLPKPVIAMV---AGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGS---FDAGY-GSSIMSRL------VG-- 222 (331)
Q Consensus 158 ~~~l~~~~kPvIAav---~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl---~p~~g-~~~~L~r~------vG-- 222 (331)
.+.|.+.+.|||..| .+.|..+|.-++++||+..+++.+.+|-..+-.+- .+... ....+..+ -|
T Consensus 78 v~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN 157 (436)
T COG1030 78 VRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRN 157 (436)
T ss_pred HHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcCCC
Confidence 889999999988888 34699999999999999999999999876544332 11111 12222222 22
Q ss_pred HHHHHHHHHcCCCCCHHHHHhcCcccEecCC
Q 020093 223 PKKAREMWFLARFYTAEEAEKMGLVNTVVPL 253 (331)
Q Consensus 223 ~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~ 253 (331)
...|.+++.....++++||++.|++|-+..+
T Consensus 158 ~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~ 188 (436)
T COG1030 158 PTWAERFVTENLSLTAEEALRQGVIDLIARD 188 (436)
T ss_pred hHHHHHHhhhccCCChhHHHhcCccccccCC
Confidence 3468888889999999999999999988754
No 134
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=97.72 E-value=0.0011 Score=62.27 Aligned_cols=108 Identities=19% Similarity=0.282 Sum_probs=70.4
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCC----CeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDS----SVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 81 v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~----~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
|+++-.+.-=..-++....-..+..+++.+.++. -+-+|.|.-.| |+.+.+-. .... ....+..
T Consensus 70 v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSG------GaRlqEg~----~~L~--~~a~i~~ 137 (301)
T PRK07189 70 VVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETG------GVRLQEAN----AGLA--AIAEIMR 137 (301)
T ss_pred EEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC------CcCccchH----HHHH--HHHHHHH
Confidence 5555555444567888888889999998887654 24566664444 33343210 0000 0011122
Q ss_pred HHHHHHcCCCcEEEEEcCc--cccchhhhhhcccEEEEeCCceeecC
Q 020093 157 LQVQIRRLPKPVIAMVAGY--AVGGGHVLHMVCDLTIAADNAIFGQT 201 (331)
Q Consensus 157 l~~~l~~~~kPvIAav~G~--a~GgG~~Lal~cD~~ia~~~a~f~~p 201 (331)
.+..+... .|+|+.|.|. |+||+..++.+||++|+++++++++.
T Consensus 138 ~~~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igla 183 (301)
T PRK07189 138 AIVDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLS 183 (301)
T ss_pred HHHHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEecc
Confidence 22334444 9999999999 99999999999999999999888873
No 135
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.68 E-value=0.00078 Score=59.30 Aligned_cols=142 Identities=21% Similarity=0.258 Sum_probs=90.0
Q ss_pred EEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEE--EEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHH
Q 020093 84 ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVII--LTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQI 161 (331)
Q Consensus 84 ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vV--l~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l 161 (331)
|.|..| ++..+...+...+-.++.++..+-|. |-+.|+ ...+| ..++..+
T Consensus 30 I~l~g~-----I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG-~V~aG----------------------~AIydtm 81 (200)
T COG0740 30 IFLGGE-----IEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGG-SVTAG----------------------LAIYDTM 81 (200)
T ss_pred EEEeee-----echHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCc-ccchh----------------------HHHHHHH
Confidence 555544 55556666666555555544444343 344442 23333 1355678
Q ss_pred HcCCCcEEEEEcCccccchhhhhhcccEE--EEeCCceeecCCCCccCCCCchHHHH-----------------HHHhhC
Q 020093 162 RRLPKPVIAMVAGYAVGGGHVLHMVCDLT--IAADNAIFGQTGPKVGSFDAGYGSSI-----------------MSRLVG 222 (331)
Q Consensus 162 ~~~~kPvIAav~G~a~GgG~~Lal~cD~~--ia~~~a~f~~pe~~~Gl~p~~g~~~~-----------------L~r~vG 222 (331)
...+.||...+-|.|..-|.-|++++|.. ++.+++++-+-...-|. -+ .++-. +....|
T Consensus 82 ~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~-~G-~a~Di~i~A~ei~~~~~~l~~i~a~~TG 159 (200)
T COG0740 82 QFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGA-QG-QASDIEIHAREILKIKERLNRIYAEHTG 159 (200)
T ss_pred HhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCCccC-cc-CHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 89999999999999999999999999995 99999998876666332 21 12211 111112
Q ss_pred HHH--HHHHHHcCCCCCHHHHHhcCcccEecCCCc
Q 020093 223 PKK--AREMWFLARFYTAEEAEKMGLVNTVVPLEK 255 (331)
Q Consensus 223 ~~~--a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~ 255 (331)
... -...+-....++|+||+++||||+|....+
T Consensus 160 q~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~ 194 (200)
T COG0740 160 QTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESRE 194 (200)
T ss_pred CCHHHHHHhhcccccCCHHHHHHcCCcceeccccc
Confidence 211 222333456899999999999999987654
No 136
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=97.61 E-value=0.0038 Score=58.31 Aligned_cols=156 Identities=17% Similarity=0.165 Sum_probs=95.6
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHH
Q 020093 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ 160 (331)
Q Consensus 81 v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (331)
|+++-.+--=..-++....-+.+.++++.+.+. .+=+|++...| |+-+.+ +...... .......+..
T Consensus 135 v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~-rlPlV~l~~SG------GARmQE----g~~sL~q--mak~saa~~~ 201 (296)
T CHL00174 135 VALGVMDFQFMGGSMGSVVGEKITRLIEYATNE-SLPLIIVCASG------GARMQE----GSLSLMQ--MAKISSALYD 201 (296)
T ss_pred EEEEEECCcccccCcCHHHHHHHHHHHHHHHHc-CCCEEEEECCC------Cccccc----cchhhhh--hHHHHHHHHH
Confidence 444444443356788888889999999888654 35567776554 333322 1000000 0011111222
Q ss_pred -HHcCCCcEEEEEcCccccchhhh-hhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCCH
Q 020093 161 -IRRLPKPVIAMVAGYAVGGGHVL-HMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTA 238 (331)
Q Consensus 161 -l~~~~kPvIAav~G~a~GgG~~L-al~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~a 238 (331)
...-..|.|+++.|+|.||+... ++.||++|+.+++.+++...++ .-..+|.. +.-+.=++
T Consensus 202 ~~~~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGPrV-----------Ie~t~ge~------lpe~fq~a 264 (296)
T CHL00174 202 YQSNKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKRV-----------IEQTLNKT------VPEGSQAA 264 (296)
T ss_pred HHHcCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCHHH-----------HHHhcCCc------CCcccccH
Confidence 23567999999999999998765 7779999998899887643221 01111110 11122346
Q ss_pred HHHHhcCcccEecCCCcHHHHHHHHHHH
Q 020093 239 EEAEKMGLVNTVVPLEKLEQETIKWSRE 266 (331)
Q Consensus 239 ~eA~~~GLv~~vv~~~~l~~~a~~~a~~ 266 (331)
+-.++-|+||.||+..+|.+...++.+-
T Consensus 265 e~l~~~G~vD~iV~r~~lr~~l~~ll~~ 292 (296)
T CHL00174 265 EYLFDKGLFDLIVPRNLLKGVLSELFQL 292 (296)
T ss_pred HHHHhCcCceEEEcHHHHHHHHHHHHHh
Confidence 6678899999999999988877766554
No 137
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=97.61 E-value=0.0016 Score=58.43 Aligned_cols=142 Identities=18% Similarity=0.256 Sum_probs=89.2
Q ss_pred CCHHHHHHHHHHHHhcccCC---CeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 020093 95 FRPHTVKELIRAFNDARDDS---SVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM 171 (331)
Q Consensus 95 l~~~~~~eL~~al~~~~~d~---~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAa 171 (331)
++.++.+.+...|-.++.++ +|.+ -|-+.|+ ...+|-=+... .....++..|...+-||...
T Consensus 49 ~~~~~a~~iiaqLl~L~~~~~~k~I~l-yINSpGG-sv~~G~~iG~v-------------~~glaIyD~m~~ik~~V~Tv 113 (222)
T PRK12552 49 VGMDVTELIIAQLLYLEFDDPEKPIYF-YINSTGT-SWYTGDAIGFE-------------TEAFAICDTMRYIKPPVHTI 113 (222)
T ss_pred hhHhHHHHHHHHHHHHhccCCCCCEEE-EEeCCCC-Ccccccccccc-------------ccHHHHHHHHHhcCCCeEEE
Confidence 34448888887777775443 3433 3455554 33333000000 01224556777888899999
Q ss_pred EcCccccchhhhhhcccE--EEEeCCceeecCCCCccCCCCchHHHH-----------------HHHhhCH--HHHHHHH
Q 020093 172 VAGYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSFDAGYGSSI-----------------MSRLVGP--KKAREMW 230 (331)
Q Consensus 172 v~G~a~GgG~~Lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~-----------------L~r~vG~--~~a~~l~ 230 (331)
+-|.|.+.+.-|++++|- |++.++++|-+-....|.. +-..-. +.+..|. ..-.+++
T Consensus 114 ~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~--G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d~ 191 (222)
T PRK12552 114 CIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR--GQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKDT 191 (222)
T ss_pred EEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHh
Confidence 999999999999999996 9999999999877665532 111211 1111121 1223333
Q ss_pred HcCCCCCHHHHHhcCcccEecCC
Q 020093 231 FLARFYTAEEAEKMGLVNTVVPL 253 (331)
Q Consensus 231 ltG~~~~a~eA~~~GLv~~vv~~ 253 (331)
-.-..++|+||+++||||+|+..
T Consensus 192 ~rd~wmsA~EA~eyGliD~Ii~~ 214 (222)
T PRK12552 192 DRMFYLTPQEAKEYGLIDRVLES 214 (222)
T ss_pred cCCCcCCHHHHHHcCCCcEEecc
Confidence 34467999999999999999865
No 138
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=97.40 E-value=0.0047 Score=62.43 Aligned_cols=170 Identities=15% Similarity=0.184 Sum_probs=107.5
Q ss_pred CCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 78 GEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 78 ~~~v~~ItLnrp~-~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
+|.-.-|.-|+|. ..-+++....+...+.++.+++ .++=+|.|.-.++ |..|.+-.. ... .....+
T Consensus 313 ~G~~V~vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~-~~lPlV~lvDs~G--~~~g~~~E~---------~g~-~~~~a~ 379 (512)
T TIGR01117 313 NGQSVGIIANQPKVMAGCLDIDSSDKIARFIRFCDA-FNIPIVTFVDVPG--FLPGVNQEY---------GGI-IRHGAK 379 (512)
T ss_pred CCEEEEEEEeccccccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEEeCcC--ccccHHHHH---------HHH-HHHHHH
Confidence 4444444555554 3456999999999999998775 4566777766552 555533210 111 113446
Q ss_pred HHHHHHcCCCcEEEEEcCccccchhhhhhc-----ccEEEEeCCceeecCCCCccCCCCchHHHHHHHh-hC----HHHH
Q 020093 157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMV-----CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL-VG----PKKA 226 (331)
Q Consensus 157 l~~~l~~~~kPvIAav~G~a~GgG~~Lal~-----cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~-vG----~~~a 226 (331)
++..+.....|.|+.|-|.+.|||+ ++++ +|++++.+++.+++ .++-+++..+.+. +. ...+
T Consensus 380 ~~~a~~~~~vP~isvi~g~~~Gga~-~am~~~~~~~d~~~a~p~a~~~v-------~~pe~a~~i~~~~~l~~~~~~~~~ 451 (512)
T TIGR01117 380 VLYAYSEATVPKVTIITRKAYGGAY-LAMCSKHLGADQVYAWPTAEIAV-------MGPAGAANIIFRKDIKEAKDPAAT 451 (512)
T ss_pred HHHHHHhCCCCEEEEEcCCCchHHH-HHhccccCCCCEEEEcCCCeEee-------cCHHHHHHHHhhhhcccccCHHHH
Confidence 6778888999999999999988865 4443 89999999987776 2223333333221 11 1111
Q ss_pred HHHH---HcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHh
Q 020093 227 REMW---FLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREIL 268 (331)
Q Consensus 227 ~~l~---ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la 268 (331)
+... +.-+..++..+.+.|+||.|+++.++.....++.+.+.
T Consensus 452 ~~~~~~~~~~~~~~~~~~a~~g~vD~VI~P~~tR~~l~~~l~~~~ 496 (512)
T TIGR01117 452 RKQKIAEYREEFANPYKAAARGYVDDVIEPKQTRPKIVNALAMLE 496 (512)
T ss_pred HHHHHHHHHHhhcCHHHHHhcCCCCeeEChHHHHHHHHHHHHHHh
Confidence 1111 12235578899999999999999998877666665543
No 139
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=97.34 E-value=0.0041 Score=62.69 Aligned_cols=150 Identities=20% Similarity=0.252 Sum_probs=95.2
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccc--cccchhcCCCcchhhhhhhhHHHHH
Q 020093 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGG--DQALRTRDGYADYENFGRLNVLDLQ 158 (331)
Q Consensus 81 v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~--Dl~~~~~~~~~~~~~~~~~~~~~l~ 158 (331)
+.++-.+.--...++.......+..+++.+.+.. +-+|.|.-.| |+ ++.+-.. .... .-.+..-.
T Consensus 59 v~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~~-~P~v~l~dsg------Ga~~r~~eg~~----~l~~--~g~i~~~~ 125 (493)
T PF01039_consen 59 VVVIAQDFTVLGGSVGEVHGEKIARAIELALENG-LPLVYLVDSG------GAFLRMQEGVE----SLMG--MGRIFRAI 125 (493)
T ss_dssp EEEEEEETTSGGGTBSHHHHHHHHHHHHHHHHHT-EEEEEEEEES------SBCGGGGGHHH----HHHH--HHHHHHHH
T ss_pred EEEEEeccceecCCCCcccceeeehHHHHHHHcC-CCcEEecccc------ccccccchhhh----hhhh--hHHHHHHH
Confidence 4444444444567899999999999999887663 4455554323 33 3332110 0000 11122333
Q ss_pred HHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCC-ceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCC
Q 020093 159 VQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYT 237 (331)
Q Consensus 159 ~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~ 237 (331)
..+.. ..|+|++|.|.|.|||..++..||++|+.++ +.+++.. +...+ ..+|+.++
T Consensus 126 ~~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~G--------------------P~vv~--~~~Ge~~~ 182 (493)
T PF01039_consen 126 ARLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLAG--------------------PRVVE--SATGEEVD 182 (493)
T ss_dssp HHHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESST--------------------HHHHH--HHHSSCTS
T ss_pred HHHhc-CCCeEEEEccccccchhhcccccCccccCccceEEEecc--------------------ccccc--cccCcccc
Confidence 45556 9999999999999999999999999999987 8777521 11111 24578888
Q ss_pred HHHH-------HhcCcccEecCCCcHHHHHHHHHHHHhc
Q 020093 238 AEEA-------EKMGLVNTVVPLEKLEQETIKWSREILR 269 (331)
Q Consensus 238 a~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la~ 269 (331)
.++. ..-|.+|.++++|+ .+.+.++++.+
T Consensus 183 ~~~lgG~~~h~~~sG~~d~v~~de~---~a~~~ir~~ls 218 (493)
T PF01039_consen 183 SEELGGADVHAAKSGVVDYVVDDEE---DALAQIRRLLS 218 (493)
T ss_dssp HHHHHBHHHHHHTSSSSSEEESSHH---HHHHHHHHHHH
T ss_pred chhhhhhhhhcccCCCceEEEechH---HHHHHHHHhhc
Confidence 7763 47899999998764 34444444443
No 140
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=97.16 E-value=0.0018 Score=52.54 Aligned_cols=69 Identities=14% Similarity=0.093 Sum_probs=50.0
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHcccc-CchhHHHHHHHHHHHHhCChhHHHHHHHHhc-C-CCCCCCCC
Q 020093 259 ETIKWSREILRNSPTAIRVLKSALNAVDD-GHAGLQTLGGDATLIFYGTEEGSEGKTAFVE-R-RRPDFLKF 327 (331)
Q Consensus 259 ~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~~~~~~~~~~s~d~~egi~afle-k-r~p~f~~~ 327 (331)
.+.+..+.|..+||.++..+-+.++.... ...+...+|......+...+||.||++|-+- | +.|+|+..
T Consensus 32 ~a~~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~~~DF~EGVRA~LIDKd~~P~W~p~ 103 (118)
T PF13766_consen 32 WAQKTLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRCMRHPDFAEGVRALLIDKDKNPKWSPA 103 (118)
T ss_dssp HHHHHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHCCSCHHHHHHHHTTS-------SSS
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCCCCCC
Confidence 35566677889999999999999998765 3456667888888888889999999999984 4 77999764
No 141
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=97.10 E-value=0.013 Score=53.73 Aligned_cols=162 Identities=16% Similarity=0.215 Sum_probs=106.4
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHH
Q 020093 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ 160 (331)
Q Consensus 81 v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (331)
++...++--=..-++..-.=+.+..+++.+-++ .+.+|+++..|+ .-+.|-. ..-.........+.+
T Consensus 124 vv~av~df~FmgGSmGsVvGeki~ra~E~A~e~-k~P~v~f~aSGG------ARMQEg~------lSLMQMaktsaAl~~ 190 (294)
T COG0777 124 VVLAVMDFAFMGGSMGSVVGEKITRAIERAIED-KLPLVLFSASGG------ARMQEGI------LSLMQMAKTSAALKR 190 (294)
T ss_pred EEEEEEeccccccchhHHHHHHHHHHHHHHHHh-CCCEEEEecCcc------hhHhHHH------HHHHHHHHHHHHHHH
Confidence 444455433334667777778888888887655 478899988773 2222100 000111223345567
Q ss_pred HHcCCCcEEEEEcCccccch-hhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCCHH
Q 020093 161 IRRLPKPVIAMVAGYAVGGG-HVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAE 239 (331)
Q Consensus 161 l~~~~kPvIAav~G~a~GgG-~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~a~ 239 (331)
+.....|.|+.+..+..||= +.+++..|+.||.+.|.+||...++= -+ .++ +-+-. ..=+++
T Consensus 191 l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRVI-------EQ----Tir-----e~LPe-gfQ~aE 253 (294)
T COG0777 191 LSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRVI-------EQ----TIR-----EKLPE-GFQTAE 253 (294)
T ss_pred HHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcchhh-------hh----hhc-----ccCCc-chhhHH
Confidence 88889999999999999984 68999999999999999998654431 00 011 10110 122455
Q ss_pred HHHhcCcccEecCCCcHHHHHHHHHHHHhccCH
Q 020093 240 EAEKMGLVNTVVPLEKLEQETIKWSREILRNSP 272 (331)
Q Consensus 240 eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~ 272 (331)
-.++-|+||.||+..++......+...+...++
T Consensus 254 fLlehG~iD~iv~R~elr~tla~ll~~~~~~~~ 286 (294)
T COG0777 254 FLLEHGMIDMIVHRDELRTTLASLLAKLTPQPA 286 (294)
T ss_pred HHHHcCCceeeecHHHHHHHHHHHHHHhCCCCC
Confidence 678899999999999988888777777665543
No 142
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=96.82 E-value=0.005 Score=56.81 Aligned_cols=90 Identities=23% Similarity=0.357 Sum_probs=66.4
Q ss_pred HHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcC
Q 020093 154 VLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLA 233 (331)
Q Consensus 154 ~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG 233 (331)
+..-+..+.+++.|+||.|=|---+||+--...+|.+.+-++++|+. +++-|.+..|.+ -..+|.+.. ..
T Consensus 177 IA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV-------isPEG~AsILWk--D~~ka~eAA-e~ 246 (317)
T COG0825 177 IARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV-------ISPEGCASILWK--DASKAKEAA-EA 246 (317)
T ss_pred HHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee-------cChhhhhhhhhc--ChhhhHHHH-HH
Confidence 33444578899999999999987777765555679999999999986 333444555554 244555443 34
Q ss_pred CCCCHHHHHhcCcccEecCC
Q 020093 234 RFYTAEEAEKMGLVNTVVPL 253 (331)
Q Consensus 234 ~~~~a~eA~~~GLv~~vv~~ 253 (331)
..++|++.+++|+||.|+|.
T Consensus 247 mkita~dLk~lgiID~II~E 266 (317)
T COG0825 247 MKITAHDLKELGIIDGIIPE 266 (317)
T ss_pred cCCCHHHHHhCCCcceeccC
Confidence 78999999999999999975
No 143
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=96.75 E-value=0.05 Score=55.64 Aligned_cols=156 Identities=21% Similarity=0.299 Sum_probs=90.2
Q ss_pred CCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 78 GEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 78 ~~~v~~ItLnrp~-~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
+|.-..|.-|.+. +..+++....+.+.++++.+.+. .+-+|.|.-.| |+.+.+ ........... -.+..
T Consensus 127 ~Gr~V~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~-~lPlV~l~DSg------Garl~~-q~e~~~~~~~~--g~if~ 196 (569)
T PLN02820 127 HGRLCMFVANDPTVKGGTYYPITVKKHLRAQEIAAQC-RLPCIYLVDSG------GANLPR-QAEVFPDRDHF--GRIFY 196 (569)
T ss_pred CCEEEEEEEECCCccCCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCC------CcCCcc-cccccchHhHH--HHHHH
Confidence 4433334444433 56889999999999999888765 35566665444 223321 00000000000 01112
Q ss_pred HHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeC-CceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCC
Q 020093 157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAAD-NAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARF 235 (331)
Q Consensus 157 l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~ 235 (331)
....+.....|.|++|-|.|.|||..+...||++|+++ ++.+++. |+...+ ..+|+.
T Consensus 197 ~~~~ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~a--------------------GP~vV~--~~~Ge~ 254 (569)
T PLN02820 197 NQARMSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFLA--------------------GPPLVK--AATGEE 254 (569)
T ss_pred HHHHHhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEec--------------------CHHHHH--hhcCcc
Confidence 22234556799999999999999999999999999996 4656541 111111 134555
Q ss_pred CCHHHH-----H--hcCcccEecCCCcHHHHHHHHHHHHh
Q 020093 236 YTAEEA-----E--KMGLVNTVVPLEKLEQETIKWSREIL 268 (331)
Q Consensus 236 ~~a~eA-----~--~~GLv~~vv~~~~l~~~a~~~a~~la 268 (331)
++++|. + .-|.++.++++|. ++..+++++.
T Consensus 255 v~~eeLGGa~~h~~~sGv~d~~~~de~---~a~~~~R~ll 291 (569)
T PLN02820 255 VSAEDLGGADVHCKVSGVSDHFAQDEL---HALAIGRNIV 291 (569)
T ss_pred cCHHHhCCHHHhcccccccccccCchH---HHHHHHHHHH
Confidence 666553 2 4788888887653 3444444443
No 144
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=96.73 E-value=0.03 Score=56.64 Aligned_cols=154 Identities=14% Similarity=0.143 Sum_probs=87.9
Q ss_pred CCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 78 GEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 78 ~~~v~~ItLnrp~-~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
++.-..|.-+... +.-+++....+.+.++++.+.+.. +-+|.|.-.| |+.+.+-. ....... .+..
T Consensus 80 ~Gr~v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSg------Garm~eg~----~~l~~~~--~~~~ 146 (512)
T TIGR01117 80 DGRLVYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSG------GARIQEAV----DALKGYG--DIFY 146 (512)
T ss_pred CCEEEEEEEECCcccccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCC------CCCccccc----hhhhhHH--HHHH
Confidence 4443334444333 467888888899999988887654 4455554433 33332210 0000000 1111
Q ss_pred HHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCc-eeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCC
Q 020093 157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNA-IFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARF 235 (331)
Q Consensus 157 l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a-~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~ 235 (331)
.. ....-..|+|++|.|.|.||+......||++|+.+++ .+++.. |++| + ..+|+.
T Consensus 147 ~~-~~~s~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~aG---------------P~vv-----~--~~~Ge~ 203 (512)
T TIGR01117 147 RN-TIASGVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFITG---------------PQVI-----K--TVTGEE 203 (512)
T ss_pred HH-HHHcCCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEecC---------------hHHH-----H--hhcCcc
Confidence 11 1233458999999999999998888899999999864 455411 1111 1 134455
Q ss_pred CCHHHH-------HhcCcccEecCCC-cHHHHHHHHHHHH
Q 020093 236 YTAEEA-------EKMGLVNTVVPLE-KLEQETIKWSREI 267 (331)
Q Consensus 236 ~~a~eA-------~~~GLv~~vv~~~-~l~~~a~~~a~~l 267 (331)
++++|. ..-|.+|.++++| +..+.++++...+
T Consensus 204 v~~e~lGGa~~h~~~sGv~d~~~~de~ea~~~~r~~ls~l 243 (512)
T TIGR01117 204 VTAEQLGGAMAHNSVSGVAHFIAEDDDDCIMLIRRLLSFL 243 (512)
T ss_pred cchhhcchHHHhccccceeEEecCChHHHHHHHHHHHHhC
Confidence 555443 3589999998765 3444444444444
No 145
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=95.85 E-value=0.095 Score=52.66 Aligned_cols=149 Identities=19% Similarity=0.249 Sum_probs=88.0
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHH
Q 020093 82 AKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQI 161 (331)
Q Consensus 82 ~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l 161 (331)
...--+.+.+.-++..-..+.+..+.+.+.++..-.+.+..+. |+.+.+- ......+. .++.-..++
T Consensus 94 ~v~a~D~TV~gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsg-------Gari~~~----v~~l~g~g--~iF~~~a~~ 160 (526)
T COG4799 94 FVFANDFTVKGGTLGEMTAKKILRAQELAIENGLPVIGLNDSG-------GARIQEG----VPSLAGYG--RIFYRNARA 160 (526)
T ss_pred EEEEecCceecccccccccchHHHHHHHHHHcCCCEEEEEccc-------ccccccC----ccccccch--HHHHHHHHh
Confidence 3333334556777887777888888877776543334344443 3444321 11111111 111222234
Q ss_pred HcCCCcEEEEEcCccccchhhhhhcccEEEEeCC-ceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCCHHH
Q 020093 162 RRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEE 240 (331)
Q Consensus 162 ~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~a~e 240 (331)
... .|.|++|-|.|.|||.-+...||++|+.++ +++.+. |+...+ .-||+.++++|
T Consensus 161 Sg~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~~~mflt--------------------GP~~ik--~vtGe~V~~e~ 217 (526)
T COG4799 161 SGV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQSYMFLT--------------------GPPVIK--AVTGEEVSAEE 217 (526)
T ss_pred ccC-CCEEEEEEecCcccccccccccceEEEEcCCccEEee--------------------CHHHHH--hhcCcEeehhh
Confidence 445 999999999999999999999999999988 444331 121111 24566666665
Q ss_pred -------HHhcCcccEecCCCcHHHHHHHHHHHHhc
Q 020093 241 -------AEKMGLVNTVVPLEKLEQETIKWSREILR 269 (331)
Q Consensus 241 -------A~~~GLv~~vv~~~~l~~~a~~~a~~la~ 269 (331)
+..-|.++.+..+| ..|.++++++.+
T Consensus 218 LGGa~vh~~~sGva~~~a~dd---~~Ai~~vr~~ls 250 (526)
T COG4799 218 LGGAQVHARKSGVADLLAEDD---EDAIELVRRLLS 250 (526)
T ss_pred ccchhhhcccccceeeeecCH---HHHHHHHHHHHH
Confidence 33458888888664 355666666554
No 146
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=95.37 E-value=0.17 Score=51.07 Aligned_cols=171 Identities=18% Similarity=0.210 Sum_probs=101.2
Q ss_pred CCCEEEEEEcCCCCCC-CCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 78 GEGIAKITINRPDRRN-AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 78 ~~~v~~ItLnrp~~~N-al~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
+|.-.-|.-|+|..+. +++.+-.....+.++.++. -++=+|.|.-.. .|-.|-+-.. ... .....+
T Consensus 292 ~G~pVGiian~~~~~~G~~~~~~a~K~arfi~lcd~-~~iPlv~l~dtp--Gf~~g~~~E~---------~g~-~~~ga~ 358 (493)
T PF01039_consen 292 GGRPVGIIANNPRQRAGALDPDGARKAARFIRLCDA-FNIPLVTLVDTP--GFMPGPEAER---------AGI-IRAGAR 358 (493)
T ss_dssp TTEEEEEEEE-TTCGGGEB-HHHHHHHHHHHHHHHH-TT--EEEEEEEC--EB--SHHHHH---------TTH-HHHHHH
T ss_pred CCcceEEEEeccccccccCChHHHHHHHHHHHHHHh-hCCceEEEeecc--cccccchhhh---------cch-HHHHHH
Confidence 5544445666665433 6999999999999988886 467777776543 4665532221 111 123457
Q ss_pred HHHHHHcCCCcEEEEEcCccccchhhhhhcc----cEEEEeCCceeecCCCCccCCCCchHHHHHHHhh-------C--H
Q 020093 157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVC----DLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV-------G--P 223 (331)
Q Consensus 157 l~~~l~~~~kPvIAav~G~a~GgG~~Lal~c----D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~v-------G--~ 223 (331)
++.++..+..|+|..|-|.+.|||..-...+ |+++|.++++++. +++.+++..+.+.- | .
T Consensus 359 ~~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~v-------m~~e~a~~i~~~~~~~~~~~~~~~~ 431 (493)
T PF01039_consen 359 LLYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIGV-------MGPEGAASILYRDELEAAEAEGADP 431 (493)
T ss_dssp HHHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEES-------S-HHHHHHHHTHHHHHHSCHCCHSH
T ss_pred HHHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceeee-------cChhhhheeeehhhhhhhhcccchh
Confidence 8889999999999999999999887444444 7888888777665 43333333332211 0 0
Q ss_pred H--HHHHHHHc-CCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHh
Q 020093 224 K--KAREMWFL-ARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREIL 268 (331)
Q Consensus 224 ~--~a~~l~lt-G~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la 268 (331)
. ....+--. -+..++..+...|++|.|+++.+.........+-+.
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~a~~~~~D~ii~p~~tR~~l~~~l~~~~ 479 (493)
T PF01039_consen 432 EAQRAEKIAEYEDELSSPYRAASRGYVDDIIDPAETRKVLIAALEMLW 479 (493)
T ss_dssp HHHHHHHHHHHHHHHSSHHHHHHTTSSSEESSGGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHhcCCCCCccCHHHHHHHHHHHHHHHH
Confidence 0 01111111 122578889999999999999888776665554443
No 147
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=95.03 E-value=0.086 Score=51.43 Aligned_cols=87 Identities=9% Similarity=0.114 Sum_probs=60.4
Q ss_pred HHhcCcccEecCCCcHHH---------------HHHHHHHHHhccCHHHHHHHHHHHHcccc-CchhHHHHHHHHHHHHh
Q 020093 241 AEKMGLVNTVVPLEKLEQ---------------ETIKWSREILRNSPTAIRVLKSALNAVDD-GHAGLQTLGGDATLIFY 304 (331)
Q Consensus 241 A~~~GLv~~vv~~~~l~~---------------~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~~~~~~~~~ 304 (331)
...+..|++++..+.+.+ -+.+..+.|.+.||.++..+.+.+++... ...+...+|......+.
T Consensus 232 ~~~~~~I~~~f~~~~~~~i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~ 311 (381)
T PLN02988 232 YHRLDVIDRCFSRRTVEEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVM 311 (381)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 334667777776544332 23333445678899999999999987653 33455566666666666
Q ss_pred C---ChhHHHHHHHHhc-C-CCCCCCCC
Q 020093 305 G---TEEGSEGKTAFVE-R-RRPDFLKF 327 (331)
Q Consensus 305 ~---s~d~~egi~afle-k-r~p~f~~~ 327 (331)
. ++||.||++|-+- | +.|+|+..
T Consensus 312 ~~~~~~DF~EGVRA~LiDKd~~P~W~p~ 339 (381)
T PLN02988 312 KGEISKDFVEGCRAILVDKDKNPKWEPR 339 (381)
T ss_pred hcCCCchHHHhHHHHhcCCCCCCCCCCC
Confidence 5 6999999999984 5 78999853
No 148
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=94.91 E-value=0.99 Score=46.35 Aligned_cols=155 Identities=9% Similarity=0.042 Sum_probs=98.1
Q ss_pred CCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEE
Q 020093 93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV 172 (331)
Q Consensus 93 Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav 172 (331)
-+++.+-.+...+.++.++. -++=+|-|.-.. .|-.|.+-+. ... .....+++.++.....|.|+.|
T Consensus 380 g~l~~~~a~Kaarfi~lc~~-~~iPlv~l~D~p--Gf~~G~~~E~---------~G~-~~~~a~l~~A~a~~~VP~isvi 446 (569)
T PLN02820 380 GILFTESALKGAHFIELCAQ-RGIPLLFLQNIT--GFMVGSRSEA---------SGI-AKAGAKMVMAVACAKVPKITII 446 (569)
T ss_pred CccCHHHHHHHHHHHHHHHh-cCCCEEEEEECC--CCCCCHHHHH---------hhH-HHHHHHHHHHHHhCCCCEEEEE
Confidence 45888888888888887765 467777776554 3666654332 111 2234578888899999999999
Q ss_pred cCccccchhhhhh----cccEEEEeCCceeecCCCCccCCCCchHHHHHHHh-h------------CHHHHH-HH--HHc
Q 020093 173 AGYAVGGGHVLHM----VCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL-V------------GPKKAR-EM--WFL 232 (331)
Q Consensus 173 ~G~a~GgG~~Lal----~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~-v------------G~~~a~-~l--~lt 232 (331)
-|.|.|+|..-.+ ..|++++.+++.++. .++.++...+.+. + -...+. +. -..
T Consensus 447 ~g~a~G~g~~aM~g~~~~~d~~~awp~A~i~v-------mg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (569)
T PLN02820 447 VGGSFGAGNYGMCGRAYSPNFLFMWPNARIGV-------MGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVEAY 519 (569)
T ss_pred ECCcchHHHHHhcCcCCCCCEEEECCCCeEEe-------cCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHHHH
Confidence 9999998764333 567887777776554 4444445444331 1 111011 10 111
Q ss_pred CCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHH
Q 020093 233 ARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREI 267 (331)
Q Consensus 233 G~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l 267 (331)
-+..++-.|-+.|+||.|+++.+.........+..
T Consensus 520 ~~~~~p~~aa~~~~vD~VIdP~dTR~~l~~~l~~~ 554 (569)
T PLN02820 520 EREANPYYSTARLWDDGVIDPADTRRVLGLCLSAA 554 (569)
T ss_pred HHhCCHHHHHHcCCcCcccCHHHHHHHHHHHHHHh
Confidence 23457777889999999999887666555544433
No 149
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=94.73 E-value=0.13 Score=50.60 Aligned_cols=85 Identities=14% Similarity=0.103 Sum_probs=58.5
Q ss_pred HhcCcccEecCCCcHHHH---------------HHHHHHHHhccCHHHHHHHHHHHHcccc-CchhHHHHHHHHHHHHhC
Q 020093 242 EKMGLVNTVVPLEKLEQE---------------TIKWSREILRNSPTAIRVLKSALNAVDD-GHAGLQTLGGDATLIFYG 305 (331)
Q Consensus 242 ~~~GLv~~vv~~~~l~~~---------------a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~~~~~~~~~~ 305 (331)
.+..+++.++..+++.+- +.+-.+.|.+.+|.++..+-+.+++... ...+...+|......+..
T Consensus 261 ~~~~~i~~~f~~~d~~ei~~al~~~~~kr~~~wa~~~~~~l~~~sP~Sl~vt~~~~~~~~~~~l~e~~~~e~~~~~~~~~ 340 (401)
T PLN02157 261 RRIDLLEKCFSHDTVEEIIDSLEIEAGRRKDTWCITTLRRLKESSPLSLKVALRSIREGRLQTLDQCLIREYRMSLQGLI 340 (401)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhhcccchHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Confidence 345666666665554332 3333445778899999999999987654 334555666665555553
Q ss_pred ---ChhHHHHHHHHhc-C-CCCCCCC
Q 020093 306 ---TEEGSEGKTAFVE-R-RRPDFLK 326 (331)
Q Consensus 306 ---s~d~~egi~afle-k-r~p~f~~ 326 (331)
++||.||++|-+- | +.|+|+.
T Consensus 341 ~~~~~DF~EGVRA~LiDKd~~P~W~p 366 (401)
T PLN02157 341 GPMSGNFCEGVRARLIDKDEAPKWDP 366 (401)
T ss_pred cCCCchHHHHHHHHHcCCCCCCCCCC
Confidence 6999999999984 4 7899985
No 150
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.93 E-value=2.2 Score=38.97 Aligned_cols=133 Identities=18% Similarity=0.235 Sum_probs=76.1
Q ss_pred CCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEc
Q 020093 94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA 173 (331)
Q Consensus 94 al~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~ 173 (331)
.++.++-+.+...|-.++.+++-|=|.+.-+.+ |+++.. -..++..+..+.-||=..+-
T Consensus 100 ~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSP-----GG~vta----------------glAIYDtMq~ik~~V~Tic~ 158 (275)
T KOG0840|consen 100 PIDDDVANLVIAQLLYLDSEDPKKPIYLYINSP-----GGSVTA----------------GLAIYDTMQYIKPDVSTICV 158 (275)
T ss_pred cCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCC-----CCccch----------------hhhHHHHHHhhCCCceeeeh
Confidence 388888888888888888776667777655543 554421 11344566667777777777
Q ss_pred CccccchhhhhhcccEEEEeCCceeecCCCCccCC-CCc----hHHHHHHH---h--------------hCH--HHHHHH
Q 020093 174 GYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSF-DAG----YGSSIMSR---L--------------VGP--KKAREM 229 (331)
Q Consensus 174 G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~-p~~----g~~~~L~r---~--------------vG~--~~a~~l 229 (331)
|.|.+-|.-|..+. +..-+|++|..++=+. |.+ ...-..-+ + .|. ....+-
T Consensus 159 G~Aas~aalLLaaG-----~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~~d 233 (275)
T KOG0840|consen 159 GLAASMAALLLAAG-----AKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIEKD 233 (275)
T ss_pred hhHHhHHHHHHhcC-----CCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhh
Confidence 88877776554442 3444555555554332 111 11111111 0 010 001111
Q ss_pred HHcCCCCCHHHHHhcCcccEecC
Q 020093 230 WFLARFYTAEEAEKMGLVNTVVP 252 (331)
Q Consensus 230 ~ltG~~~~a~eA~~~GLv~~vv~ 252 (331)
+-.-+.++|+||++.||||.|+.
T Consensus 234 ~dRd~fmsa~EA~eyGliD~v~~ 256 (275)
T KOG0840|consen 234 MDRDRFMSAEEAKEYGLIDKVID 256 (275)
T ss_pred hcccccCCHHHHHHhcchhhhhc
Confidence 11235699999999999999985
No 151
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=86.84 E-value=14 Score=37.40 Aligned_cols=167 Identities=15% Similarity=0.162 Sum_probs=100.5
Q ss_pred EEEEEEcCCC-CCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHH
Q 020093 81 IAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQV 159 (331)
Q Consensus 81 v~~ItLnrp~-~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~ 159 (331)
|+ |.=|.|. ..-+|+.+-.+.-.+.++.++ -.++=.|.|.-.- .|..|-|-.. ... ..+-..++.
T Consensus 326 VG-iIANqp~~~~G~l~~~sa~KaArFI~~cd-~~~iPlv~L~d~p--GFm~G~~~E~---------~gi-ik~Gakl~~ 391 (526)
T COG4799 326 VG-IIANQPRHLGGVLDIDSADKAARFIRLCD-AFNIPLVFLVDTP--GFMPGTDQEY---------GGI-IKHGAKLLY 391 (526)
T ss_pred EE-EEecCccccccccchHHHHHHHHHHHhhh-ccCCCeEEEeCCC--CCCCChhHHh---------ChH-HHhhhHHHh
Confidence 45 4445554 456888888888888885444 4577788887653 5998876542 111 112346888
Q ss_pred HHHcCCCcEEEEEcCccccchhhh----hhcccEEEEeCCceeecCCCCccCCCCchHHHHHHH-hhCH-HH-H------
Q 020093 160 QIRRLPKPVIAMVAGYAVGGGHVL----HMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSR-LVGP-KK-A------ 226 (331)
Q Consensus 160 ~l~~~~kPvIAav~G~a~GgG~~L----al~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r-~vG~-~~-a------ 226 (331)
++....+|.|..|-|.+.|||... ++.+|+.+|.+++.++. .-+-|+...+.+ .+.. .+ .
T Consensus 392 A~aeatVPkitvI~rkayGga~~~M~~~~~~~~~~~AwP~a~iaV-------MG~egAv~i~~~k~l~~~~~~~~~~~~~ 464 (526)
T COG4799 392 AVAEATVPKITVITRKAYGGAYYVMGGKALGPDFNYAWPTAEIAV-------MGPEGAVSILYRKELAAAERPEEREALL 464 (526)
T ss_pred hHhhccCCeEEEEecccccceeeeecCccCCCceeEecCcceeee-------cCHHHHHHHHHHHHhhcccCchhHHHHH
Confidence 999999999999999999999643 34567777777766654 323333333332 1110 00 0
Q ss_pred ---HHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHh
Q 020093 227 ---REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREIL 268 (331)
Q Consensus 227 ---~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la 268 (331)
..--+.-+...+--|.+.|++|.|+++.+...........+.
T Consensus 465 ~~~~~~eY~~~~~~p~~aa~r~~iD~vI~p~~tR~~L~~~l~~~~ 509 (526)
T COG4799 465 RKQLIAEYEEQFSNPYYAAERGYIDAVIDPADTRAVLGRALSALA 509 (526)
T ss_pred HHHHHHHHHHhccchHHHHHhCCCCcccCHHHHHHHHHHHHHHHh
Confidence 001111222455556778899999888765554444333333
No 152
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=81.82 E-value=3.2 Score=39.22 Aligned_cols=79 Identities=24% Similarity=0.357 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhcccCC---CeeEEEE-EeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEE
Q 020093 97 PHTVKELIRAFNDARDDS---SVGVIIL-TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV 172 (331)
Q Consensus 97 ~~~~~eL~~al~~~~~d~---~v~~vVl-~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav 172 (331)
.....++.++|+.+.... .+-+||| +|.|. + -||. .++-..+.++|..++.|||++|
T Consensus 54 ~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs--~---eDL~--------------~FN~e~varai~~~~~PvisaI 114 (319)
T PF02601_consen 54 EGAAASIVSALRKANEMGQADDFDVIIIIRGGGS--I---EDLW--------------AFNDEEVARAIAASPIPVISAI 114 (319)
T ss_pred cchHHHHHHHHHHHHhccccccccEEEEecCCCC--h---HHhc--------------ccChHHHHHHHHhCCCCEEEec
Confidence 345677888888887654 5667766 44331 1 1332 2344578889999999999976
Q ss_pred cCccccchhhhhhcccEEEEeCCc
Q 020093 173 AGYAVGGGHVLHMVCDLTIAADNA 196 (331)
Q Consensus 173 ~G~a~GgG~~Lal~cD~~ia~~~a 196 (331)
||-.=- .-.=+.||+|..|+++
T Consensus 115 -GHe~D~-ti~D~vAd~ra~TPta 136 (319)
T PF02601_consen 115 -GHETDF-TIADFVADLRAPTPTA 136 (319)
T ss_pred -CCCCCc-hHHHHHHHhhCCCHHH
Confidence 222111 1234567777777664
No 153
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=80.76 E-value=3.6 Score=40.87 Aligned_cols=80 Identities=20% Similarity=0.247 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcCcc
Q 020093 97 PHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYA 176 (331)
Q Consensus 97 ~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a 176 (331)
.+...++..+++.++..+++-+|||.=.|+ .+ -||. .++-..+.+++..+|.|||++| ||-
T Consensus 169 ~~a~~~i~~al~~~~~~~~~dviii~RGGG-s~---eDL~--------------~Fn~e~~~rai~~~~~Pvis~i-GHe 229 (432)
T TIGR00237 169 EGAVQSIVESIELANTKNECDVLIVGRGGG-SL---EDLW--------------SFNDEKVARAIFLSKIPIISAV-GHE 229 (432)
T ss_pred ccHHHHHHHHHHHhhcCCCCCEEEEecCCC-CH---HHhh--------------hcCcHHHHHHHHcCCCCEEEec-CcC
Confidence 445677788888777655566666633231 11 1332 2344578889999999999976 111
Q ss_pred ccchhhhhhcccEEEEeCCc
Q 020093 177 VGGGHVLHMVCDLTIAADNA 196 (331)
Q Consensus 177 ~GgG~~Lal~cD~~ia~~~a 196 (331)
.-- .-.=+.+|.|..|+.+
T Consensus 230 ~D~-ti~D~vAd~ra~TPta 248 (432)
T TIGR00237 230 TDF-TISDFVADLRAPTPSA 248 (432)
T ss_pred CCc-cHHHHhhhccCCCcHH
Confidence 110 1133567778777654
No 154
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=79.56 E-value=5 Score=37.35 Aligned_cols=53 Identities=25% Similarity=0.344 Sum_probs=35.3
Q ss_pred HHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcCccc
Q 020093 103 LIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177 (331)
Q Consensus 103 L~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~ 177 (331)
+.++|+.+++||+.++||+-|+- |++-.+ . -.+.+.. ....|||||.+-|.+.
T Consensus 188 fid~L~~fe~Dp~T~~ivmiGEi------GG~aEe-----------~----AA~~i~~-~~~~KPVVa~iaG~ta 240 (293)
T COG0074 188 FIDALEMFEADPETEAIVMIGEI------GGPAEE-----------E----AAEYIKA-NATRKPVVAYIAGRTA 240 (293)
T ss_pred HHHHHHHHhcCccccEEEEEecC------CCcHHH-----------H----HHHHHHH-hccCCCEEEEEeccCC
Confidence 35788889999999999999973 111111 1 1122333 3344999999999876
No 155
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=76.79 E-value=31 Score=34.31 Aligned_cols=150 Identities=17% Similarity=0.178 Sum_probs=94.1
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHH
Q 020093 84 ITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIR 162 (331)
Q Consensus 84 ItLnrp~-~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~ 162 (331)
|.-|+|+ ..-.|..+.-....+.++.+. ...+-.|.|...++ |-.|.+.+... . ...-..|..+..
T Consensus 353 Ivgnn~kf~~G~L~s~sa~KgarfIe~c~-q~~IPLi~l~ni~G--fm~g~~~e~~g---------I-aK~gAklv~a~a 419 (536)
T KOG0540|consen 353 IVGNNPKFAGGVLFSESAVKGARFIELCD-QRNIPLIFLQNITG--FMVGRAAEAGG---------I-AKHGAKLVYAVA 419 (536)
T ss_pred EeccCchhcccccchhhhhhhHHHHHHHH-hcCCcEEEEEccCC--ccccchhhhhc---------h-hhhhhhhhhhhh
Confidence 5556665 235566666666666665554 45677888877763 88888776422 1 112235777888
Q ss_pred cCCCcEEEEEcCccccchhh---hhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHh-----hCH-HHHHHHHHcC
Q 020093 163 RLPKPVIAMVAGYAVGGGHV---LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL-----VGP-KKAREMWFLA 233 (331)
Q Consensus 163 ~~~kPvIAav~G~a~GgG~~---Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~-----vG~-~~a~~l~ltG 233 (331)
....|-|..+.|.+.||-.. -++.-|+.++-++|++++-..+ ++.-.|.+. +.. +.+.|.+ |
T Consensus 420 ~akvpkITiit~~syGG~y~m~sr~~~gd~~yawP~A~IavmG~~-------~a~~Vi~q~~~e~a~~~~~~~~E~f--~ 490 (536)
T KOG0540|consen 420 CAKVPKITIITGGSYGGNYAMCSRGYSGDINYAWPNARIAVMGGK-------QAANVIFQITLEKAVALKAPYIEKF--G 490 (536)
T ss_pred hccCceEEEEecCccCCcccccccccCCceeEEcccceeeecccc-------chhhhhhhhhhhhhhhhcchHHHHh--c
Confidence 89999999999999997654 5678899999999988873321 112222222 110 1122222 5
Q ss_pred CCCCHHHHHhcCcccEecCCCcHHH
Q 020093 234 RFYTAEEAEKMGLVNTVVPLEKLEQ 258 (331)
Q Consensus 234 ~~~~a~eA~~~GLv~~vv~~~~l~~ 258 (331)
.++. |...|++|.|+++.+...
T Consensus 491 npy~---a~~Rg~~D~II~p~~tR~ 512 (536)
T KOG0540|consen 491 NPYY---AAARGWDDGIIDPSDTRK 512 (536)
T ss_pred CccH---HHHhhccccccChhHhhH
Confidence 5554 356789999998876544
No 156
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=76.53 E-value=14 Score=33.55 Aligned_cols=153 Identities=15% Similarity=0.127 Sum_probs=86.2
Q ss_pred CCCCCHHHHHHHHHHHHhcccCCCeeEEEE--EeCCCCceeccccccchhcCCCcchhhhh-----hhhHHHHHHHHHcC
Q 020093 92 RNAFRPHTVKELIRAFNDARDDSSVGVIIL--TGKGTEAFCSGGDQALRTRDGYADYENFG-----RLNVLDLQVQIRRL 164 (331)
Q Consensus 92 ~Nal~~~~~~eL~~al~~~~~d~~v~~vVl--~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~-----~~~~~~l~~~l~~~ 164 (331)
...+..+.-..|.+++.+.-++..-|-||+ -..|. .++ ..++.. .....+.+...+..
T Consensus 40 ~~~vGl~ea~~lA~~V~~~i~~~~krpIv~lVD~~sQ-a~g--------------rreEllGi~~alAhla~a~a~AR~~ 104 (234)
T PF06833_consen 40 HGEVGLEEAWALAKAVLDTIRSGPKRPIVALVDVPSQ-AYG--------------RREELLGINQALAHLAKAYALARLA 104 (234)
T ss_pred CCcccHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCcc-ccc--------------hHHHHhhHHHHHHHHHHHHHHHHHc
Confidence 477888777777776665443333344443 22221 121 111111 11234556667788
Q ss_pred CCcEEEEEcCccccchh-hhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCC--CCHHHH
Q 020093 165 PKPVIAMVAGYAVGGGH-VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARF--YTAEEA 241 (331)
Q Consensus 165 ~kPvIAav~G~a~GgG~-~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~--~~a~eA 241 (331)
.-|||+.|-|.|++||| .-.+.+|..||-+++.... +++ -+..+..++ ....-.++.-+--. ++.+--
T Consensus 105 GHpvI~Lv~G~A~SGaFLA~GlqA~rl~AL~ga~i~v----M~~----~s~ARVTk~-~ve~Le~la~s~PvfA~gi~ny 175 (234)
T PF06833_consen 105 GHPVIGLVYGKAMSGAFLAHGLQANRLIALPGAMIHV----MGK----PSAARVTKR-PVEELEELAKSVPVFAPGIENY 175 (234)
T ss_pred CCCeEEEEecccccHHHHHHHHHhcchhcCCCCeeec----CCh----HHhHHHhhc-CHHHHHHHhhcCCCcCCCHHHH
Confidence 99999999999999997 6677888888876443321 221 123443333 33333444444332 556677
Q ss_pred HhcCcccEecCCCcHHHHHHHHHHHHh
Q 020093 242 EKMGLVNTVVPLEKLEQETIKWSREIL 268 (331)
Q Consensus 242 ~~~GLv~~vv~~~~l~~~a~~~a~~la 268 (331)
.++|+++++.+.+.-..-..+++..+.
T Consensus 176 ~~lG~l~~l~~~~~~~~~~~~~~~~v~ 202 (234)
T PF06833_consen 176 AKLGALDELWDGDLADQPAEALAAQVQ 202 (234)
T ss_pred HHhccHHHHhcccccccccHHHHHHHH
Confidence 899999999885443333333333333
No 157
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=76.02 E-value=6.5 Score=32.65 Aligned_cols=52 Identities=25% Similarity=0.346 Sum_probs=28.8
Q ss_pred HHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcCcc
Q 020093 102 ELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYA 176 (331)
Q Consensus 102 eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a 176 (331)
.+.+.++.+.+||++++|++.-++-+ | . ..+.+..+..... ||||+..-|..
T Consensus 41 ~~~d~l~~~~~D~~t~~I~ly~E~~~------d-----------~-----~~f~~~~~~a~~~-KPVv~lk~Grt 92 (138)
T PF13607_consen 41 DFADLLEYLAEDPDTRVIVLYLEGIG------D-----------G-----RRFLEAARRAARR-KPVVVLKAGRT 92 (138)
T ss_dssp -HHHHHHHHCT-SS--EEEEEES--S------------------H-----HHHHHHHHHHCCC-S-EEEEE----
T ss_pred CHHHHHHHHhcCCCCCEEEEEccCCC------C-----------H-----HHHHHHHHHHhcC-CCEEEEeCCCc
Confidence 46677888889999999999987621 1 0 1233455566666 99999999873
No 158
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=72.59 E-value=7.9 Score=38.36 Aligned_cols=77 Identities=27% Similarity=0.386 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcCcccc
Q 020093 99 TVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVG 178 (331)
Q Consensus 99 ~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~G 178 (331)
--.+|.++++.++..+++.++|+.= | |+-+ +....++-..+.+++..+..|||++| ||-.-
T Consensus 177 A~~eIv~aI~~an~~~~~DvlIVaR-G------GGSi-----------EDLW~FNdE~vaRAi~~s~iPvISAV-GHEtD 237 (440)
T COG1570 177 AAEEIVEAIERANQRGDVDVLIVAR-G------GGSI-----------EDLWAFNDEIVARAIAASRIPVISAV-GHETD 237 (440)
T ss_pred cHHHHHHHHHHhhccCCCCEEEEec-C------cchH-----------HHHhccChHHHHHHHHhCCCCeEeec-ccCCC
Confidence 3455666666666555555555521 1 1112 12223444568899999999999987 22110
Q ss_pred chhh-hhhcccEEEEeCCc
Q 020093 179 GGHV-LHMVCDLTIAADNA 196 (331)
Q Consensus 179 gG~~-Lal~cD~~ia~~~a 196 (331)
+. .=+.+|+|-.|+++
T Consensus 238 --~tL~DfVAD~RApTPTa 254 (440)
T COG1570 238 --FTLADFVADLRAPTPTA 254 (440)
T ss_pred --ccHHHhhhhccCCCchH
Confidence 11 12356777777654
No 159
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=70.46 E-value=9.5 Score=37.82 Aligned_cols=78 Identities=23% Similarity=0.290 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhcccCCCeeEEEE-EeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcCc
Q 020093 97 PHTVKELIRAFNDARDDSSVGVIIL-TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGY 175 (331)
Q Consensus 97 ~~~~~eL~~al~~~~~d~~v~~vVl-~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~ 175 (331)
.....++.++|+.++... +-+||| +|.|. + -||. .++-..+.+++..++.|||++| ||
T Consensus 175 ~~A~~~i~~al~~~~~~~-~Dviii~RGGGS--~---eDL~--------------~Fn~e~v~~ai~~~~~Pvis~I-GH 233 (438)
T PRK00286 175 EGAAASIVAAIERANARG-EDVLIVARGGGS--L---EDLW--------------AFNDEAVARAIAASRIPVISAV-GH 233 (438)
T ss_pred ccHHHHHHHHHHHhcCCC-CCEEEEecCCCC--H---HHhh--------------ccCcHHHHHHHHcCCCCEEEec-cC
Confidence 344577777777776533 445555 44331 1 1332 2344578889999999999976 11
Q ss_pred cccchhhhhhcccEEEEeCCc
Q 020093 176 AVGGGHVLHMVCDLTIAADNA 196 (331)
Q Consensus 176 a~GgG~~Lal~cD~~ia~~~a 196 (331)
-.=- .-.=+.+|.|..|+++
T Consensus 234 E~D~-tl~D~vAd~ra~TPta 253 (438)
T PRK00286 234 ETDF-TIADFVADLRAPTPTA 253 (438)
T ss_pred CCCc-cHHHHhhhccCCChHH
Confidence 1100 1134567788888765
No 160
>PLN02522 ATP citrate (pro-S)-lyase
Probab=67.57 E-value=13 Score=38.52 Aligned_cols=53 Identities=23% Similarity=0.331 Sum_probs=36.0
Q ss_pred HHHHHHhcccCCCeeEEEEEeC-CCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcCcccc
Q 020093 103 LIRAFNDARDDSSVGVIILTGK-GTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVG 178 (331)
Q Consensus 103 L~~al~~~~~d~~v~~vVl~g~-g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~G 178 (331)
+.+.|+.+++||++++|++.++ |.+ | .. .+.+..+... ..||||+.+-|.+..
T Consensus 210 ~~D~L~~~~~Dp~Tk~IvlygEiGg~------~-----------e~-----~f~ea~~~a~-~~KPVVa~kaGrsa~ 263 (608)
T PLN02522 210 LSDHVLRFNNIPQIKMIVVLGELGGR------D-----------EY-----SLVEALKQGK-VSKPVVAWVSGTCAR 263 (608)
T ss_pred HHHHHHHHhcCCCCCEEEEEEecCch------h-----------HH-----HHHHHHHHhc-CCCCEEEEeccCCCc
Confidence 4667778889999999999998 631 0 00 1112222222 689999999999873
No 161
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=64.06 E-value=16 Score=34.84 Aligned_cols=54 Identities=24% Similarity=0.353 Sum_probs=35.2
Q ss_pred HHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcCccc
Q 020093 102 ELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177 (331)
Q Consensus 102 eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~ 177 (331)
.+.+.|+.+++||+.++|++.+++. | +-. .+. .+++.. ....||||+.+-|...
T Consensus 211 ~~~D~L~~~~~Dp~T~~Ivl~~E~g-----G-~~e---------~~a------a~fi~~-~~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 211 NFIDCLKLFLNDPETEGIILIGEIG-----G-TAE---------EEA------AEWIKN-NPIKKPVVSFIAGITA 264 (317)
T ss_pred CHHHHHHHHhhCCCccEEEEEEecC-----C-chh---------HHH------HHHHHh-hcCCCcEEEEEecCCC
Confidence 3567788888899999999999862 1 111 000 111222 2468999999999864
No 162
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=59.21 E-value=18 Score=34.23 Aligned_cols=54 Identities=22% Similarity=0.321 Sum_probs=35.2
Q ss_pred HHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcCccc
Q 020093 102 ELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177 (331)
Q Consensus 102 eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~ 177 (331)
++.+.|+.+.+||+.++|+|..++. |.+++. -.+++.... ..||||+..-|..-
T Consensus 192 ~~~d~L~yl~~Dp~T~~I~ly~E~~-----G~~~~d----------------~~~f~~aa~-~~KPVV~lk~Grs~ 245 (300)
T PLN00125 192 NFVDCLEKFVKDPQTEGIILIGEIG-----GTAEED----------------AAAFIKESG-TEKPVVAFIAGLTA 245 (300)
T ss_pred CHHHHHHHHhhCCCCcEEEEEeccC-----CchHHH----------------HHHHHHHhc-CCCCEEEEEecCCC
Confidence 4567777888899999999998862 322221 011222222 38999999988863
No 163
>smart00250 PLEC Plectin repeat.
Probab=50.88 E-value=12 Score=23.53 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=16.8
Q ss_pred cCCCCCHHHHHhcCcccE
Q 020093 232 LARFYTAEEAEKMGLVNT 249 (331)
Q Consensus 232 tG~~~~a~eA~~~GLv~~ 249 (331)
+|++++-.||.+.||++.
T Consensus 18 t~~~lsv~eA~~~glid~ 35 (38)
T smart00250 18 TGQKLSVEEALRRGLIDP 35 (38)
T ss_pred CCCCcCHHHHHHcCCCCc
Confidence 899999999999999985
No 164
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=49.84 E-value=18 Score=35.72 Aligned_cols=97 Identities=16% Similarity=0.163 Sum_probs=55.9
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEE--EeCCCCceeccccccchhc-CCCcc--hhhhhhhhHH
Q 020093 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL--TGKGTEAFCSGGDQALRTR-DGYAD--YENFGRLNVL 155 (331)
Q Consensus 81 v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl--~g~g~~~FcaG~Dl~~~~~-~~~~~--~~~~~~~~~~ 155 (331)
|++|.| +.|+.....+|..++..++.+. ++.+|| +++++...+...++..+.- .+..- .........+
T Consensus 205 IGyI~I------~~F~~~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~~r~g~~~~~ 277 (406)
T COG0793 205 IGYIRI------PSFGEGTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTRGRNGKVNVY 277 (406)
T ss_pred EEEEEe------cccccchHHHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHcccCCCcEEEEecCCCceeec
Confidence 888877 4577888888999999999876 788876 7766545555555543211 10000 0000000000
Q ss_pred HHHHHHHcCCCcEEEEEcCccccchhhhh
Q 020093 156 DLQVQIRRLPKPVIAMVAGYAVGGGHVLH 184 (331)
Q Consensus 156 ~l~~~l~~~~kPvIAav~G~a~GgG~~La 184 (331)
.-...-...++|+|..||+....++=-++
T Consensus 278 ~~~~~~~~~~~PlvvLvn~~SASAsEI~a 306 (406)
T COG0793 278 FSASGEALYDGPLVVLVNEGSASASEIFA 306 (406)
T ss_pred cccccccCCCCCEEEEECCCCccHHHHHH
Confidence 00000014589999999999877664333
No 165
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=47.47 E-value=33 Score=29.04 Aligned_cols=69 Identities=30% Similarity=0.368 Sum_probs=38.9
Q ss_pred EEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHH--
Q 020093 85 TINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIR-- 162 (331)
Q Consensus 85 tLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~-- 162 (331)
|--||.- -++++.. .++|..+.+||++++|++-+.++ + | . .+.. ...+...+.
T Consensus 48 t~GrphP--mid~~~~---~~~l~~~~~Dp~v~vIlvd~~~G--~--g-~-----------~~~~----A~~l~~a~~~~ 102 (153)
T PF00549_consen 48 TQGRPHP--MIDPSTR---NEALEIEAADPEVKVILVDIVGG--I--G-S-----------CEDP----AAGLIPAIKEA 102 (153)
T ss_dssp HTTS--T--TT-SSHH---HHHHHHHHTSTTESEEEEEEESS--S--S-S-----------HHHH----HHHHHHHHSHC
T ss_pred cccCcCC--CcCHHHH---HHHHHHHhcCCCccEEEEEeccc--c--C-c-----------hHHH----HHHHHHHHHhc
Confidence 3346653 3665544 45666777899999999988773 1 1 0 0000 112333333
Q ss_pred ---cCCCcEEEEEcCcccc
Q 020093 163 ---RLPKPVIAMVAGYAVG 178 (331)
Q Consensus 163 ---~~~kPvIAav~G~a~G 178 (331)
...+|+|+.|.|...-
T Consensus 103 ~~~~~~~pvVa~v~GT~~d 121 (153)
T PF00549_consen 103 KAEGRKKPVVARVCGTNAD 121 (153)
T ss_dssp THTTT-SEEEEEEESTTCH
T ss_pred cccCCCCcEEEEeeeecCC
Confidence 3679999999997654
No 166
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=46.42 E-value=16 Score=36.45 Aligned_cols=53 Identities=23% Similarity=0.326 Sum_probs=36.9
Q ss_pred HHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcCccc
Q 020093 102 ELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177 (331)
Q Consensus 102 eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~ 177 (331)
.+.+.|+.+.+|+++++|++..++-+ | . ..+....++..+ .||||+..-|..-
T Consensus 190 ~~~d~l~~l~~D~~t~~I~ly~E~~~------~-----------~-----~~f~~aa~~a~~-~KPVv~~k~Grs~ 242 (447)
T TIGR02717 190 DESDLLEYLADDPDTKVILLYLEGIK------D-----------G-----RKFLKTAREISK-KKPIVVLKSGTSE 242 (447)
T ss_pred CHHHHHHHHhhCCCCCEEEEEecCCC------C-----------H-----HHHHHHHHHHcC-CCCEEEEecCCCh
Confidence 55678888888999999999887621 0 0 012344445545 8999999999864
No 167
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=44.86 E-value=38 Score=27.59 Aligned_cols=45 Identities=24% Similarity=0.361 Sum_probs=32.7
Q ss_pred EEEEEEcCCCCCCCC--C----------HHHHHHHHHHHHhc--ccCCCeeEEEEEeCC
Q 020093 81 IAKITINRPDRRNAF--R----------PHTVKELIRAFNDA--RDDSSVGVIILTGKG 125 (331)
Q Consensus 81 v~~ItLnrp~~~Nal--~----------~~~~~eL~~al~~~--~~d~~v~~vVl~g~g 125 (331)
+..|+.+-|.|+..= + ...+.++.+.+.+. -+.+++++|||.|.|
T Consensus 25 ~~~i~~~ip~K~~~Gg~s~~rf~r~~~~~~f~~~i~~~l~~~f~~~~~~~~~iIiaGPG 83 (133)
T PF03464_consen 25 LQRIESNIPGKHKKGGQSQRRFEREKALEKFFKEIAEALKKYFLVNFDDVKCIIIAGPG 83 (133)
T ss_dssp EEEEE-GHCCCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHCCCHTTTCSEEEEEEST
T ss_pred EEEEEecCCCccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccEEEEECCH
Confidence 466788889987642 1 35677777777776 667889999999987
No 168
>PRK06091 membrane protein FdrA; Validated
Probab=43.35 E-value=55 Score=33.60 Aligned_cols=52 Identities=29% Similarity=0.422 Sum_probs=32.0
Q ss_pred HHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcCccc
Q 020093 103 LIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177 (331)
Q Consensus 103 L~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~ 177 (331)
+.++|+.+.+||+.++|++.++-+ . +.. + .+++..++++.||||+..-|..-
T Consensus 240 ~~D~L~~L~~DP~TkvIvly~kpp-a------------------E~v-~---~~fl~aar~~~KPVVvlk~Grs~ 291 (555)
T PRK06091 240 ALTALEMLSADEKSEVIAFVSKPP-A------------------EAV-R---LKIINAMKATGKPVVALFLGYTP 291 (555)
T ss_pred HHHHHHHHhhCCCCcEEEEEEecC-c------------------hHH-H---HHHHHHHhhCCCCEEEEEecCCc
Confidence 445556666677777777776432 0 011 1 14445556679999999998654
No 169
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=42.23 E-value=54 Score=30.70 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=19.7
Q ss_pred HHHHHHHhcccCCCeeEEEEEeCC
Q 020093 102 ELIRAFNDARDDSSVGVIILTGKG 125 (331)
Q Consensus 102 eL~~al~~~~~d~~v~~vVl~g~g 125 (331)
++.+.|+.+.+||+.++|++..++
T Consensus 185 ~~~D~l~~l~~Dp~T~~I~lylE~ 208 (286)
T TIGR01019 185 SFIDVLEAFEKDPETEAIVMIGEI 208 (286)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEec
Confidence 456677788889999999999875
No 170
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=40.63 E-value=60 Score=30.48 Aligned_cols=24 Identities=17% Similarity=0.380 Sum_probs=19.8
Q ss_pred HHHHHHHhcccCCCeeEEEEEeCC
Q 020093 102 ELIRAFNDARDDSSVGVIILTGKG 125 (331)
Q Consensus 102 eL~~al~~~~~d~~v~~vVl~g~g 125 (331)
.+.+.|+.+.+||+.++|++..++
T Consensus 187 ~~~D~l~~l~~Dp~T~~I~lylE~ 210 (291)
T PRK05678 187 NFIDVLEAFEEDPETEAIVMIGEI 210 (291)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEec
Confidence 356777788899999999999875
No 171
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=38.03 E-value=11 Score=24.73 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=15.6
Q ss_pred cCCCCCHHHHHhcCcccE
Q 020093 232 LARFYTAEEAEKMGLVNT 249 (331)
Q Consensus 232 tG~~~~a~eA~~~GLv~~ 249 (331)
+|++++-++|.+.||||.
T Consensus 18 tg~~lsv~~A~~~glId~ 35 (45)
T PF00681_consen 18 TGERLSVEEAIQRGLIDS 35 (45)
T ss_dssp TTEEEEHHHHHHTTSS-H
T ss_pred CCeEEcHHHHHHCCCcCH
Confidence 689999999999999985
No 172
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=29.44 E-value=3.5e+02 Score=25.41 Aligned_cols=114 Identities=17% Similarity=0.153 Sum_probs=67.3
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccch-h--------cCCCcchhhhhhh
Q 020093 82 AKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALR-T--------RDGYADYENFGRL 152 (331)
Q Consensus 82 ~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~-~--------~~~~~~~~~~~~~ 152 (331)
=++.||-. .|-++...+..+.+++.++-..+.-++-||-|...+.|.---|.... . ..+..-...+.+.
T Consensus 130 Nilpi~Gs--~h~Vt~~~lAa~~e~~~~~~p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRR 207 (329)
T COG3660 130 NILPINGS--PHNVTSQRLAALREAFKHLLPLPRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSRR 207 (329)
T ss_pred ceeeccCC--CCcccHHHhhhhHHHHHhhCCCCCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeecC
Confidence 35667653 47799999999999999986566677777777666777654443221 0 0000000000011
Q ss_pred hHHHHHHHHHc-CCCcEEEEEcCcc--ccchhhhhhcccEEEEeCCce
Q 020093 153 NVLDLQVQIRR-LPKPVIAMVAGYA--VGGGHVLHMVCDLTIAADNAI 197 (331)
Q Consensus 153 ~~~~l~~~l~~-~~kPvIAav~G~a--~GgG~~Lal~cD~~ia~~~a~ 197 (331)
.-..+...|.. ++--.+...++-- ..--+.+..++|++|++.++.
T Consensus 208 Tp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaDSi 255 (329)
T COG3660 208 TPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTADSI 255 (329)
T ss_pred CcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcceEEEecchh
Confidence 11122223332 5556677888873 334577888999999997763
No 173
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=29.16 E-value=38 Score=33.07 Aligned_cols=100 Identities=17% Similarity=0.243 Sum_probs=51.9
Q ss_pred CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEE--EeCCCCceeccccccc-hhcCCCcch--hhhhhhh
Q 020093 79 EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL--TGKGTEAFCSGGDQAL-RTRDGYADY--ENFGRLN 153 (331)
Q Consensus 79 ~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl--~g~g~~~FcaG~Dl~~-~~~~~~~~~--~~~~~~~ 153 (331)
++|++|.| +.|+.....++.++|+.+... +++.+|| +++|+..+....++.. +........ .......
T Consensus 194 ~~IgYi~i------~~F~~~~~~~~~~~l~~l~~~-~~~glIlDLR~N~GG~~~~a~~ia~~f~~~~~~~~~~~~~~~~~ 266 (389)
T PLN00049 194 PKIGYIKL------TTFNQNASSAVKEAIETLRAN-GVDAFVLDLRDNSGGLFPAGIEIAKLWLDKGVIVYIADSRGVRD 266 (389)
T ss_pred CCEEEEEe------ccccchhHHHHHHHHHHHHHC-CCCEEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCcee
Confidence 36788877 446667788999999988754 5777776 6655333333333322 111110000 0000000
Q ss_pred HHHHHHH-HHcCCCcEEEEEcCccccchhhhhh
Q 020093 154 VLDLQVQ-IRRLPKPVIAMVAGYAVGGGHVLHM 185 (331)
Q Consensus 154 ~~~l~~~-l~~~~kPvIAav~G~a~GgG~~Lal 185 (331)
.+..... .....+|++..||+....++=.++.
T Consensus 267 ~~~~~~~~~~~~~~PvvVLvn~~TaSasEi~a~ 299 (389)
T PLN00049 267 IYDADGSSAIATSEPLAVLVNKGTASASEILAG 299 (389)
T ss_pred EEecCCCccccCCCCEEEEECCCCccHHHHHHH
Confidence 0000000 1134689999999998877654443
No 174
>PLN02287 3-ketoacyl-CoA thiolase
Probab=27.92 E-value=56 Score=32.68 Aligned_cols=42 Identities=26% Similarity=0.287 Sum_probs=28.5
Q ss_pred hHHHHHHHHHhhhcccCCCcCCCCCCccccccCCCCCcccccc
Q 020093 5 IDSARRRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIH 47 (331)
Q Consensus 5 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (331)
|+|++.|-..+-.||-|+++..++ .|...|.+..+.-|+|.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 42 (452)
T PLN02287 1 MEKAINRQRVLLRHLRPSSSEPSS-LSASACAAGDSAAYHRTT 42 (452)
T ss_pred CchHHHHHHHHHhhccCCCCCccc-cccccccccchhhhcccc
Confidence 799999999999999887533222 222335556666777763
No 175
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=26.76 E-value=1.7e+02 Score=22.15 Aligned_cols=46 Identities=20% Similarity=0.332 Sum_probs=32.0
Q ss_pred EEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCC
Q 020093 73 YEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125 (331)
Q Consensus 73 ~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g 125 (331)
++. .+++.++.++.| |+.....++.+.+..+-..++.+.|||--.+
T Consensus 3 ~~~--~~~~~vi~l~G~-----L~f~~~~~~~~~l~~~~~~~~~~~vilDls~ 48 (106)
T TIGR02886 3 FEV--KGDVLIVRLSGE-----LDHHTAERVRRKIDDAIERRPIKHLILNLKN 48 (106)
T ss_pred EEE--ECCEEEEEEecc-----cchhhHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 455 678999999755 6667777777777665433457788886655
No 176
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=26.65 E-value=1.7e+02 Score=22.62 Aligned_cols=47 Identities=19% Similarity=0.301 Sum_probs=37.3
Q ss_pred EEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCC--------eeEEEEEeCC
Q 020093 72 IYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSS--------VGVIILTGKG 125 (331)
Q Consensus 72 ~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~--------v~~vVl~g~g 125 (331)
.++. .+++.+++++.| |+-.....+.+.+.++..... ++.|||--.+
T Consensus 3 ~~~~--~~~v~ii~~~g~-----l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~ 57 (117)
T PF01740_consen 3 EIET--HDGVLIIRLDGP-----LFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSG 57 (117)
T ss_dssp EEEE--ETTEEEEEEESE-----ESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETT
T ss_pred eeEE--ECCEEEEEEeeE-----EEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEEe
Confidence 3556 789999999865 888889999998888776654 7899997655
No 177
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=26.55 E-value=1.9e+02 Score=21.83 Aligned_cols=48 Identities=21% Similarity=0.244 Sum_probs=32.7
Q ss_pred EEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCC
Q 020093 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125 (331)
Q Consensus 71 v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g 125 (331)
+.++. .+++.+|++..+ ++......+.+.+..+..++..+.|+|--.+
T Consensus 5 i~~~~--~~~~~vi~~~G~-----l~~~~~~~~~~~l~~~~~~~~~~~vvidls~ 52 (108)
T TIGR00377 5 IETEV--QEGVVIVRLSGE-----LDAHTAPLLREKVTPAAERTGPRPIVLDLED 52 (108)
T ss_pred EEEEE--ECCEEEEEEecc-----cccccHHHHHHHHHHHHHhcCCCeEEEECCC
Confidence 55666 788999999743 5556667777777665544567777775544
No 178
>KOG3446 consensus NADH:ubiquinone oxidoreductase NDUFA2/B8 subunit [Energy production and conversion]
Probab=25.91 E-value=27 Score=26.52 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=22.1
Q ss_pred HhCChhHHHHHHHHhcCCCCCCCC-CCCCC
Q 020093 303 FYGTEEGSEGKTAFVERRRPDFLK-FPRRP 331 (331)
Q Consensus 303 ~~~s~d~~egi~aflekr~p~f~~-~~~~~ 331 (331)
+.+..+.-.|+++|+||+-++.++ .|+.|
T Consensus 22 lcqkspaSagvR~fvEk~Y~~lKkaNP~lP 51 (97)
T KOG3446|consen 22 LCQKSPASAGVREFVEKFYVNLKKANPDLP 51 (97)
T ss_pred ecCCCCcchhHHHHHHHhhhhhhhcCCCCc
Confidence 345666788999999999888765 46665
No 179
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=24.37 E-value=1.5e+02 Score=27.21 Aligned_cols=57 Identities=25% Similarity=0.321 Sum_probs=34.6
Q ss_pred HHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcCccc
Q 020093 102 ELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177 (331)
Q Consensus 102 eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~ 177 (331)
.+.++|+-+-+|++.+.|||-|+-+ +.-+ ++.. .+..-. .-..-+||||+++.|...
T Consensus 218 ~FID~L~vFl~D~~t~GIiliGEIG------G~AE---------e~AA---~flk~~-nSg~~~kPVvsFIAG~tA 274 (329)
T KOG1255|consen 218 NFIDCLEVFLEDPETEGIILIGEIG------GSAE---------EEAA---EFLKEY-NSGSTAKPVVSFIAGVTA 274 (329)
T ss_pred cHHHHHHHHhcCcccceEEEEeccC------Chhh---------HHHH---HHHHHh-ccCCCCCceeEEeecccC
Confidence 3567788888899999999998752 1111 1111 010100 123478999999988643
No 180
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=24.14 E-value=1.5e+02 Score=30.80 Aligned_cols=61 Identities=21% Similarity=0.280 Sum_probs=40.2
Q ss_pred HHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEc-----------
Q 020093 105 RAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA----------- 173 (331)
Q Consensus 105 ~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~----------- 173 (331)
.+++++...++-+.||++|--+--|--|- ......+.+++..+.||.||+|.
T Consensus 354 ~v~erl~hr~dg~yvvvsgitptp~gegk-----------------st~t~glvqal~~l~k~~iacvrqpsqgptfgvk 416 (935)
T KOG4230|consen 354 AVLERLKHRKDGKYVVVSGITPTPLGEGK-----------------STTTAGLVQALGALGKLAIACVRQPSQGPTFGVK 416 (935)
T ss_pred HHHHHHhccCCCcEEEEeccCCCCCCCCc-----------------chhHHHHHHHHHhhCCcceeeecCCCcCCccccc
Confidence 45667777778889999986553232220 01123577788889999999983
Q ss_pred Cccccchhh
Q 020093 174 GYAVGGGHV 182 (331)
Q Consensus 174 G~a~GgG~~ 182 (331)
|-|.|||+.
T Consensus 417 ggaagggys 425 (935)
T KOG4230|consen 417 GGAAGGGYS 425 (935)
T ss_pred cccCCCccc
Confidence 556677753
No 181
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=23.39 E-value=2.3e+02 Score=26.85 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHHHHHhcccCCCeeEEEE-EeC
Q 020093 93 NAFRPHTVKELIRAFNDARDDSSVGVIIL-TGK 124 (331)
Q Consensus 93 Nal~~~~~~eL~~al~~~~~d~~v~~vVl-~g~ 124 (331)
--++++.+.+|.+.+++.-+++++..||+ .|+
T Consensus 55 s~~t~~~w~~la~~i~~~~~~~~~dG~VVtHGT 87 (323)
T smart00870 55 SNMTPADWLKLAKRINEALADDGYDGVVVTHGT 87 (323)
T ss_pred ccCCHHHHHHHHHHHHHHhccCCCCEEEEecCC
Confidence 44999999999999987545556655555 444
No 182
>PLN02312 acyl-CoA oxidase
Probab=23.25 E-value=84 Score=33.25 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=18.2
Q ss_pred CCcchHHH--HHHHHHhhhcccCC
Q 020093 1 MAPQIDSA--RRRMTAVANHLVPV 22 (331)
Q Consensus 1 ~~~~~~~~--~~r~~~~~~~~~~~ 22 (331)
|.+-|+.. .||+..|++||.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (680)
T PLN02312 1 MMAGMSPSAAARRAHVLANHLAQS 24 (680)
T ss_pred CCCccchhHHHHHHHHHHHhccCC
Confidence 67788864 59999999999775
No 183
>cd06567 Peptidase_S41 C-terminal processing peptidase family S41. Peptidase family S41 (C-terminal processing peptidase or CTPase family) contains very different subfamilies; it includes photosystem II D1 C-terminal processing protease (CTPase), interphotoreceptor retinoid-binding protein IRBP and tricorn protease (TRI). CTPase and TRI both contain the PDZ domain while IRBP, although being very similar to the tail-specific protease domain, lacks the PDZ insertion domain and hydrolytic activity. These serine proteases have distinctly different active sites: in CTPase, the active site consists of a serine/lysine catalytic dyad while in tricorn core protease, it is a tetrad (serine, histidine, serine, glutamate). CPases with different substrate specificities in different species include processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and others such as tricorn pr
Probab=23.12 E-value=53 Score=28.99 Aligned_cols=98 Identities=15% Similarity=0.074 Sum_probs=49.7
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEE--EeCCCCceeccccccc-hhcCCCcchhhhhhh---hH
Q 020093 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL--TGKGTEAFCSGGDQAL-RTRDGYADYENFGRL---NV 154 (331)
Q Consensus 81 v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl--~g~g~~~FcaG~Dl~~-~~~~~~~~~~~~~~~---~~ 154 (331)
|++|.++.=. .....+++.+++..+.. +++.+|| +++++.....+.++-. +.............. ..
T Consensus 61 igYi~i~~f~-----~~~~~~~~~~~~~~~~~--~~~~lIiDLR~N~GG~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 133 (224)
T cd06567 61 IGYIRIPSFS-----AESTAEELREALAELKK--GVKGLILDLRNNPGGLLSAAVELASLFLPKGKIVVTTRRRGGNETE 133 (224)
T ss_pred eEEEEECccC-----CcchHHHHHHHHHHHHc--CCCEEEEEcCCCCCccHHHHHHHHHHhcCCCcEEEEEecCCCceeE
Confidence 8889886432 26777888888888876 5777776 5554211111211111 111100000000000 00
Q ss_pred HHHHHHHHcCCCcEEEEEcCccccchhhhhh
Q 020093 155 LDLQVQIRRLPKPVIAMVAGYAVGGGHVLHM 185 (331)
Q Consensus 155 ~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal 185 (331)
......-....+|++..+++.+..++=.++.
T Consensus 134 ~~~~~~~~~~~~pv~vL~~~~taSaaE~~a~ 164 (224)
T cd06567 134 YVAPGGGSLYDGPLVVLVNEGSASASEIFAG 164 (224)
T ss_pred EecCCCCcccCCCEEEEECCCCccHHHHHHH
Confidence 0000112346889999999988877755544
No 184
>PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A ....
Probab=22.96 E-value=84 Score=28.40 Aligned_cols=76 Identities=21% Similarity=0.205 Sum_probs=43.4
Q ss_pred HHHHHHhcccC-CCeeEEEE-EeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcCc-cccc
Q 020093 103 LIRAFNDARDD-SSVGVIIL-TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGY-AVGG 179 (331)
Q Consensus 103 L~~al~~~~~d-~~v~~vVl-~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~-a~Gg 179 (331)
..++|+++..+ .+|..||. |.+| .+.-|.|..... .|.--|..--..|+|. |.||
T Consensus 108 a~~AL~~~g~~~~dIthlv~vs~TG--~~~PglD~~l~~--------------------~LgL~~~v~R~~i~~~GC~gg 165 (226)
T PF00195_consen 108 ARKALAEAGLDPSDITHLVTVSCTG--IAAPGLDARLIN--------------------RLGLRPDVQRTPIFGMGCAGG 165 (226)
T ss_dssp HHHHHHHHTS-GGGECEEEEEESSS--SECS-HHHHHHH--------------------HHT--TTSEEEEEES-GGGHH
T ss_pred HHHHHHHcCCCCcccceEEEEecCC--cCCCchhHHHHh--------------------cCCCCCCcEEEEEeccchhhH
Confidence 34567777655 56777775 4454 788888875432 2222223333445564 7888
Q ss_pred hhhhhhcccEEEEeCCceeec
Q 020093 180 GHVLHMVCDLTIAADNAIFGQ 200 (331)
Q Consensus 180 G~~Lal~cD~~ia~~~a~f~~ 200 (331)
...|..+.||.-+.++++.-+
T Consensus 166 ~~~L~~A~~~~~~~p~a~VLv 186 (226)
T PF00195_consen 166 AAGLRRAKDIARANPGARVLV 186 (226)
T ss_dssp HHHHHHHHHHHHHSTT-EEEE
T ss_pred HHHHHHHHHHHhCCccceEEE
Confidence 889999999866666655433
No 185
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=22.51 E-value=1.6e+02 Score=26.48 Aligned_cols=36 Identities=19% Similarity=0.464 Sum_probs=28.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCC
Q 020093 88 RPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126 (331)
Q Consensus 88 rp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~ 126 (331)
.++....++.+.+++|.+.+.++. ..++|++.|.|+
T Consensus 13 ~~~~~~~~~~~~l~~l~~~l~~l~---g~~vvlVhGgg~ 48 (252)
T cd04241 13 DKDRPETIREENLERIARELAEAI---DEKLVLVHGGGS 48 (252)
T ss_pred cCCCCCccCHHHHHHHHHHHHhcc---CCCEEEEECCCc
Confidence 444456799999999999998876 567898898763
No 186
>PRK11186 carboxy-terminal protease; Provisional
Probab=21.39 E-value=88 Score=33.02 Aligned_cols=101 Identities=17% Similarity=0.246 Sum_probs=52.4
Q ss_pred CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEE--EeCCCCceeccccccc-hhcCCCcc--hhhhhhhh
Q 020093 79 EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL--TGKGTEAFCSGGDQAL-RTRDGYAD--YENFGRLN 153 (331)
Q Consensus 79 ~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl--~g~g~~~FcaG~Dl~~-~~~~~~~~--~~~~~~~~ 153 (331)
+.|++|.|+ .|+..+..++.+++.++.. .+++.+|| +++|+.....+.++.. +...+..- ........
T Consensus 353 ~kIGYI~I~------sF~~~~~~d~~~~l~~l~~-~~v~gLIlDLR~NgGG~l~~a~~la~lFi~~g~vv~~~~~~g~~~ 425 (667)
T PRK11186 353 EKVGVLDIP------GFYVGLTDDVKKQLQKLEK-QNVSGIIIDLRGNGGGALTEAVSLSGLFIPSGPVVQVRDNNGRVR 425 (667)
T ss_pred CcEEEEEec------ccccchHHHHHHHHHHHHH-CCCCEEEEEcCCCCCCcHHHHHHHHHHHhcCCceEEEecCCCcee
Confidence 457777774 4666677888888888865 46888886 6665433333333322 11111000 00000000
Q ss_pred HHHHHHHHHcCCCcEEEEEcCccccchhhhhhc
Q 020093 154 VLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186 (331)
Q Consensus 154 ~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~ 186 (331)
...-...-.....|++..||+....++=.++.+
T Consensus 426 ~~~~~~~~~~~~gPlvVLVN~~SASASEIfA~a 458 (667)
T PRK11186 426 VDSDTDGVVYYKGPLVVLVDRYSASASEIFAAA 458 (667)
T ss_pred ccccCCcccccCCCEEEEeCCCCccHHHHHHHH
Confidence 000000112346799999999987776544443
No 187
>PF12268 DUF3612: Protein of unknown function (DUF3612); InterPro: IPR022055 This domain family is found in bacteria, and is approximately 180 amino acids in length. The family is found in association with PF01381 from PFAM.
Probab=21.16 E-value=39 Score=28.42 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=19.0
Q ss_pred CCeeEEEEEeCCCCceeccccccc
Q 020093 114 SSVGVIILTGKGTEAFCSGGDQAL 137 (331)
Q Consensus 114 ~~v~~vVl~g~g~~~FcaG~Dl~~ 137 (331)
+++++.=+.|.. +..|+|.||+-
T Consensus 78 ESi~v~D~Agn~-hVLCaGIDLNP 100 (178)
T PF12268_consen 78 ESIKVKDLAGNN-HVLCAGIDLNP 100 (178)
T ss_pred cccccccCCCCc-eeEEecccCCH
Confidence 457777888887 79999999985
No 188
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=20.69 E-value=2.9e+02 Score=29.30 Aligned_cols=96 Identities=18% Similarity=0.222 Sum_probs=56.0
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCC---ce--eccccccchhcCCCcchhhhhhhhH
Q 020093 80 GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE---AF--CSGGDQALRTRDGYADYENFGRLNV 154 (331)
Q Consensus 80 ~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~---~F--caG~Dl~~~~~~~~~~~~~~~~~~~ 154 (331)
=++.|.|..|-| .+..++++++.+ -.++++++||..+. +. -.|.| ++.... ..++.
T Consensus 436 ~lG~i~l~D~~R---------~~~~eai~~Lr~-~GI~vvMiTGDn~~TA~aIA~elGId--~v~A~~-~PedK------ 496 (679)
T PRK01122 436 VLGVIYLKDIVK---------PGIKERFAELRK-MGIKTVMITGDNPLTAAAIAAEAGVD--DFLAEA-TPEDK------ 496 (679)
T ss_pred EEEEEEEeccCc---------hhHHHHHHHHHH-CCCeEEEECCCCHHHHHHHHHHcCCc--EEEccC-CHHHH------
Confidence 377788887765 455566666654 46999999997641 11 22332 111000 00111
Q ss_pred HHHHHHHHcCCCcEEEEEc--------------Cccccchhhhhh-cccEEEEeCC
Q 020093 155 LDLQVQIRRLPKPVIAMVA--------------GYAVGGGHVLHM-VCDLTIAADN 195 (331)
Q Consensus 155 ~~l~~~l~~~~kPvIAav~--------------G~a~GgG~~Lal-~cD~~ia~~~ 195 (331)
.++.+.+.+..+ +||++- |.|+|.|.+++- ++|+++..++
T Consensus 497 ~~iV~~lQ~~G~-~VaMtGDGvNDAPALa~ADVGIAMgsGTdvAkeAADiVLldd~ 551 (679)
T PRK01122 497 LALIRQEQAEGR-LVAMTGDGTNDAPALAQADVGVAMNSGTQAAKEAGNMVDLDSN 551 (679)
T ss_pred HHHHHHHHHcCC-eEEEECCCcchHHHHHhCCEeEEeCCCCHHHHHhCCEEEeCCC
Confidence 134445544443 466663 688898888887 8888888765
No 189
>cd07560 Peptidase_S41_CPP C-terminal processing peptidase; serine protease family S41. The C-terminal processing peptidase (CPP, EC 3.4.21.102) also known as tail-specific protease (tsp), the photosystem II D1 C-terminal processing protease (D1P), and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential, and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectl
Probab=20.62 E-value=55 Score=29.01 Aligned_cols=91 Identities=19% Similarity=0.241 Sum_probs=50.1
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEE--EeCCCCceeccccccc-------hhcCCCcc-hhhh-
Q 020093 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL--TGKGTEAFCSGGDQAL-------RTRDGYAD-YENF- 149 (331)
Q Consensus 81 v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl--~g~g~~~FcaG~Dl~~-------~~~~~~~~-~~~~- 149 (331)
|++|.++. |+....+++.++|+++... +++.+|| ++++ |+++.. +....... ....
T Consensus 50 igYi~i~s------f~~~~~~~~~~~l~~~~~~-~~~~lIlDLR~N~------GG~~~~~~~i~~~f~~~~~~~~~~~~~ 116 (211)
T cd07560 50 IGYIRITS------FSENTAEELKKALKELKKQ-GMKGLILDLRNNP------GGLLDEAVEIADLFLPGGPIVSTKGRN 116 (211)
T ss_pred eEEEEEcc------cCchhHHHHHHHHHHHHhc-cCceEEEEcCCCC------CCCHHHHHHHHHHhcCCCeEEEEEecC
Confidence 88888863 5567788999999988754 3777776 5544 444332 11110000 0000
Q ss_pred hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhh
Q 020093 150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHM 185 (331)
Q Consensus 150 ~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal 185 (331)
....... ...-....+|++..+++.+..++=.++.
T Consensus 117 g~~~~~~-~~~~~~~~~pvvVLvn~~TaSaaE~~a~ 151 (211)
T cd07560 117 GKREAYA-SDDGGLYDGPLVVLVNGGSASASEIVAG 151 (211)
T ss_pred CceEEEe-cCCCccCCCCEEEEeCCCcccHHHHHHH
Confidence 0000000 0001146899999999998877755444
No 190
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=20.52 E-value=36 Score=20.04 Aligned_cols=16 Identities=19% Similarity=0.420 Sum_probs=8.5
Q ss_pred HHHHHHHhcCCCCCCC
Q 020093 310 SEGKTAFVERRRPDFL 325 (331)
Q Consensus 310 ~egi~aflekr~p~f~ 325 (331)
+..++.|+|||+-...
T Consensus 5 K~SLqRFLeKRK~R~~ 20 (27)
T PF09425_consen 5 KASLQRFLEKRKDRLA 20 (27)
T ss_dssp -HHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHhhc
Confidence 4567899999986654
Done!