Query 020094
Match_columns 331
No_of_seqs 178 out of 1483
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 06:58:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020094.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020094hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15359 type III secretion sy 99.6 2.7E-14 5.9E-19 122.9 14.1 113 176-290 27-139 (144)
2 COG3063 PilF Tfp pilus assembl 99.5 2.3E-13 5.1E-18 126.3 13.4 123 176-301 38-163 (250)
3 PRK10370 formate-dependent nit 99.5 3.7E-13 8E-18 122.1 14.3 115 186-301 52-168 (198)
4 KOG4626 O-linked N-acetylgluco 99.5 9.3E-14 2E-18 142.8 10.8 129 171-301 284-412 (966)
5 PRK15359 type III secretion sy 99.5 4E-13 8.7E-18 115.6 12.3 107 190-301 10-116 (144)
6 TIGR00990 3a0801s09 mitochondr 99.5 8.9E-13 1.9E-17 136.9 17.2 124 176-301 334-457 (615)
7 TIGR00990 3a0801s09 mitochondr 99.5 9.3E-13 2E-17 136.8 16.9 125 175-301 367-491 (615)
8 KOG4626 O-linked N-acetylgluco 99.5 2.9E-13 6.3E-18 139.2 12.4 130 171-302 352-481 (966)
9 PRK11189 lipoprotein NlpI; Pro 99.5 1.6E-12 3.5E-17 124.0 16.1 126 173-301 64-189 (296)
10 TIGR02521 type_IV_pilW type IV 99.5 4E-12 8.6E-17 110.1 16.4 127 173-301 31-159 (234)
11 COG3063 PilF Tfp pilus assembl 99.4 1.2E-12 2.5E-17 121.6 12.4 130 174-306 70-202 (250)
12 TIGR02552 LcrH_SycD type III s 99.4 2.5E-12 5.4E-17 106.7 13.0 106 194-301 4-109 (135)
13 TIGR02521 type_IV_pilW type IV 99.4 8.9E-12 1.9E-16 107.9 16.4 126 174-301 66-193 (234)
14 PRK12370 invasion protein regu 99.4 4.3E-12 9.4E-17 130.9 16.6 128 172-301 337-465 (553)
15 PRK12370 invasion protein regu 99.4 2.9E-12 6.3E-17 132.1 15.0 129 172-302 294-431 (553)
16 TIGR02552 LcrH_SycD type III s 99.4 7.9E-12 1.7E-16 103.7 14.0 108 172-281 16-123 (135)
17 PLN03088 SGT1, suppressor of 99.4 6E-12 1.3E-16 123.6 15.4 113 178-292 7-119 (356)
18 PF13429 TPR_15: Tetratricopep 99.4 1.4E-12 3.1E-17 122.0 9.6 128 172-301 145-272 (280)
19 TIGR02917 PEP_TPR_lipo putativ 99.4 1.1E-11 2.5E-16 127.5 16.4 125 174-301 771-895 (899)
20 PRK10370 formate-dependent nit 99.4 1.1E-11 2.3E-16 112.5 14.2 105 172-277 72-178 (198)
21 PRK09782 bacteriophage N4 rece 99.4 1.5E-11 3.3E-16 134.8 17.1 121 178-301 581-701 (987)
22 PRK15174 Vi polysaccharide exp 99.4 1.1E-11 2.4E-16 130.6 15.2 127 173-301 246-376 (656)
23 PRK15179 Vi polysaccharide bio 99.4 1.6E-11 3.4E-16 130.4 16.5 128 172-301 85-212 (694)
24 PRK15174 Vi polysaccharide exp 99.3 1.9E-11 4.2E-16 128.8 16.7 123 177-301 216-342 (656)
25 KOG0553 TPR repeat-containing 99.3 7.3E-12 1.6E-16 119.9 12.0 108 185-294 93-200 (304)
26 KOG1155 Anaphase-promoting com 99.3 1.5E-11 3.2E-16 123.4 12.8 120 180-301 337-456 (559)
27 PRK09782 bacteriophage N4 rece 99.3 2.2E-11 4.7E-16 133.6 15.0 130 173-304 609-738 (987)
28 KOG1126 DNA-binding cell divis 99.3 4.7E-12 1E-16 130.8 6.4 121 179-301 427-547 (638)
29 PRK15363 pathogenicity island 99.3 1.2E-10 2.6E-15 102.8 13.9 97 176-274 38-134 (157)
30 TIGR02917 PEP_TPR_lipo putativ 99.3 1.6E-10 3.5E-15 119.1 16.6 124 175-301 738-861 (899)
31 cd00189 TPR Tetratricopeptide 99.2 9.2E-11 2E-15 85.6 10.7 97 177-275 4-100 (100)
32 PRK11447 cellulose synthase su 99.2 1.7E-10 3.6E-15 128.5 17.4 123 178-302 356-520 (1157)
33 PRK11189 lipoprotein NlpI; Pro 99.2 1.6E-10 3.5E-15 110.3 14.8 113 187-301 40-156 (296)
34 KOG1126 DNA-binding cell divis 99.2 1.2E-11 2.6E-16 127.8 7.5 117 183-301 465-581 (638)
35 PRK11788 tetratricopeptide rep 99.2 2.5E-10 5.3E-15 110.1 15.5 124 176-301 110-238 (389)
36 COG5010 TadD Flp pilus assembl 99.2 2.7E-10 5.9E-15 107.2 14.4 124 176-301 103-226 (257)
37 TIGR03302 OM_YfiO outer membra 99.2 2.6E-10 5.5E-15 103.5 13.8 124 177-301 74-227 (235)
38 PRK10049 pgaA outer membrane p 99.2 3.7E-10 8E-15 120.9 17.2 123 176-301 52-174 (765)
39 PRK11788 tetratricopeptide rep 99.2 3.3E-10 7.1E-15 109.3 15.2 124 175-301 182-306 (389)
40 TIGR02795 tol_pal_ybgF tol-pal 99.2 4.6E-10 1E-14 89.7 13.6 104 177-282 6-115 (119)
41 TIGR03302 OM_YfiO outer membra 99.2 4.9E-10 1.1E-14 101.6 14.8 130 171-302 31-191 (235)
42 PRK15363 pathogenicity island 99.2 2.3E-10 5.1E-15 101.0 12.1 102 198-301 25-127 (157)
43 PRK11447 cellulose synthase su 99.2 5.5E-10 1.2E-14 124.3 16.5 130 174-305 604-739 (1157)
44 PF13414 TPR_11: TPR repeat; P 99.2 1.9E-10 4.2E-15 85.5 8.6 68 205-274 1-69 (69)
45 KOG1155 Anaphase-promoting com 99.1 5.5E-10 1.2E-14 112.3 14.0 122 178-301 369-490 (559)
46 PF13429 TPR_15: Tetratricopep 99.1 2.3E-10 5E-15 107.1 10.6 130 171-302 108-239 (280)
47 PRK02603 photosystem I assembl 99.1 3.1E-09 6.7E-14 93.2 14.3 103 173-277 35-154 (172)
48 CHL00033 ycf3 photosystem I as 99.1 4.1E-09 8.8E-14 91.9 14.6 115 174-293 36-167 (168)
49 COG5010 TadD Flp pilus assembl 99.1 2.7E-09 5.7E-14 100.6 13.4 128 171-301 65-192 (257)
50 PRK10049 pgaA outer membrane p 99.0 2.9E-09 6.3E-14 114.0 14.8 127 176-304 313-454 (765)
51 PLN02789 farnesyltranstransfer 99.0 5.6E-09 1.2E-13 101.7 15.4 118 182-301 46-166 (320)
52 COG4783 Putative Zn-dependent 99.0 5.7E-09 1.2E-13 105.4 15.4 124 176-301 309-432 (484)
53 KOG1125 TPR repeat-containing 99.0 1E-09 2.2E-14 112.4 10.1 116 177-294 434-559 (579)
54 cd00189 TPR Tetratricopeptide 99.0 5.6E-09 1.2E-13 76.0 10.6 91 209-301 2-92 (100)
55 KOG0547 Translocase of outer m 99.0 2.2E-09 4.7E-14 108.7 11.0 133 171-303 392-563 (606)
56 KOG0548 Molecular co-chaperone 99.0 1.6E-09 3.4E-14 110.2 10.0 108 180-289 365-472 (539)
57 PF13432 TPR_16: Tetratricopep 99.0 1.6E-09 3.6E-14 79.8 7.5 63 213-277 3-65 (65)
58 KOG2076 RNA polymerase III tra 99.0 1E-08 2.2E-13 109.3 16.1 123 177-301 143-265 (895)
59 KOG0547 Translocase of outer m 99.0 4E-09 8.7E-14 106.7 11.2 121 179-301 366-486 (606)
60 PF13432 TPR_16: Tetratricopep 98.9 2.1E-09 4.5E-14 79.3 6.6 64 178-242 2-65 (65)
61 KOG1125 TPR repeat-containing 98.9 2.5E-09 5.4E-14 109.6 8.8 109 188-298 409-519 (579)
62 PLN03088 SGT1, suppressor of 98.9 1.2E-08 2.7E-13 100.3 13.1 89 211-301 6-94 (356)
63 TIGR00540 hemY_coli hemY prote 98.9 2.1E-08 4.6E-13 99.7 14.8 129 172-302 262-395 (409)
64 PF12895 Apc3: Anaphase-promot 98.9 3.2E-09 6.9E-14 82.5 6.8 81 186-269 2-84 (84)
65 PF13414 TPR_11: TPR repeat; P 98.9 3.9E-09 8.4E-14 78.4 6.7 64 175-239 5-69 (69)
66 PLN02789 farnesyltranstransfer 98.9 4.4E-08 9.6E-13 95.5 15.7 110 179-290 77-189 (320)
67 TIGR02795 tol_pal_ybgF tol-pal 98.9 4E-08 8.7E-13 78.4 12.8 95 207-303 2-102 (119)
68 PRK14574 hmsH outer membrane p 98.9 3.2E-08 6.9E-13 107.2 15.5 127 173-301 34-160 (822)
69 PRK15179 Vi polysaccharide bio 98.9 2.6E-08 5.7E-13 106.0 14.7 127 173-301 49-178 (694)
70 CHL00033 ycf3 photosystem I as 98.9 3.6E-08 7.8E-13 85.9 12.6 113 187-301 13-137 (168)
71 PRK11906 transcriptional regul 98.8 4.3E-08 9.3E-13 99.2 13.9 113 188-301 273-396 (458)
72 cd05804 StaR_like StaR_like; a 98.8 4.1E-08 8.9E-13 93.7 13.2 124 177-302 47-211 (355)
73 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 7E-08 1.5E-12 96.7 15.2 117 179-300 175-291 (395)
74 COG4235 Cytochrome c biogenesi 98.8 7E-08 1.5E-12 92.7 13.9 114 187-301 136-251 (287)
75 cd05804 StaR_like StaR_like; a 98.8 4.9E-08 1.1E-12 93.2 12.8 99 174-274 115-217 (355)
76 COG4235 Cytochrome c biogenesi 98.8 7.4E-08 1.6E-12 92.5 13.9 107 171-278 154-262 (287)
77 PRK10153 DNA-binding transcrip 98.8 8.1E-08 1.8E-12 99.3 15.1 123 188-315 357-488 (517)
78 PRK10803 tol-pal system protei 98.8 1.6E-07 3.4E-12 89.3 15.2 107 171-279 140-253 (263)
79 KOG0543 FKBP-type peptidyl-pro 98.8 4.5E-08 9.8E-13 97.2 11.8 116 181-298 216-346 (397)
80 PRK10747 putative protoheme IX 98.8 2E-07 4.3E-12 92.6 15.6 126 172-303 262-387 (398)
81 PRK02603 photosystem I assembl 98.7 9.7E-08 2.1E-12 83.8 11.4 99 196-296 22-125 (172)
82 PF09976 TPR_21: Tetratricopep 98.7 4.1E-07 8.9E-12 77.7 15.0 114 185-301 23-142 (145)
83 PF14559 TPR_19: Tetratricopep 98.7 2.6E-08 5.6E-13 73.6 6.5 61 221-282 4-64 (68)
84 PF12895 Apc3: Anaphase-promot 98.7 2.3E-08 5E-13 77.7 6.1 79 221-301 2-82 (84)
85 PF14559 TPR_19: Tetratricopep 98.7 4.1E-08 9E-13 72.5 6.9 67 183-250 1-67 (68)
86 PRK14574 hmsH outer membrane p 98.7 2.5E-07 5.4E-12 100.3 15.7 123 176-301 105-227 (822)
87 PRK15331 chaperone protein Sic 98.7 1.8E-07 3.8E-12 83.4 11.8 113 176-291 40-152 (165)
88 PF13371 TPR_9: Tetratricopept 98.7 1.1E-07 2.3E-12 71.2 8.8 58 221-279 8-65 (73)
89 TIGR00540 hemY_coli hemY prote 98.7 4.9E-07 1.1E-11 90.0 15.9 123 177-301 88-211 (409)
90 KOG1129 TPR repeat-containing 98.7 1.8E-08 4E-13 98.3 5.4 127 173-301 290-419 (478)
91 PF13371 TPR_9: Tetratricopept 98.7 1.3E-07 2.8E-12 70.8 8.9 70 179-249 1-70 (73)
92 PRK14720 transcript cleavage f 98.7 2.1E-07 4.6E-12 101.2 13.1 117 172-290 115-270 (906)
93 KOG1840 Kinesin light chain [C 98.7 1.9E-07 4.1E-12 96.3 12.0 128 176-305 244-395 (508)
94 KOG1128 Uncharacterized conser 98.6 7E-08 1.5E-12 101.3 8.4 116 184-301 496-611 (777)
95 PRK10747 putative protoheme IX 98.6 1.1E-06 2.4E-11 87.4 16.2 124 180-305 125-291 (398)
96 KOG4162 Predicted calmodulin-b 98.6 5.3E-07 1.1E-11 95.2 14.3 122 178-301 655-778 (799)
97 KOG1173 Anaphase-promoting com 98.6 2.4E-07 5.2E-12 95.2 11.4 120 179-300 386-512 (611)
98 KOG0553 TPR repeat-containing 98.6 2.6E-07 5.7E-12 88.9 10.8 80 221-301 94-173 (304)
99 KOG2002 TPR-containing nuclear 98.6 2.2E-07 4.8E-12 100.0 10.4 130 171-301 162-294 (1018)
100 KOG1840 Kinesin light chain [C 98.6 8.8E-07 1.9E-11 91.4 13.9 125 175-301 327-474 (508)
101 KOG3060 Uncharacterized conser 98.6 1E-06 2.2E-11 83.5 13.0 112 178-291 91-239 (289)
102 PF06552 TOM20_plant: Plant sp 98.6 6.4E-07 1.4E-11 80.9 11.1 97 189-286 7-123 (186)
103 PRK15331 chaperone protein Sic 98.6 3.6E-07 7.8E-12 81.4 9.3 97 203-301 33-129 (165)
104 KOG3060 Uncharacterized conser 98.5 1.2E-06 2.6E-11 83.0 13.0 115 185-301 64-178 (289)
105 KOG2003 TPR repeat-containing 98.5 6.1E-07 1.3E-11 90.7 11.6 131 177-315 528-692 (840)
106 KOG1173 Anaphase-promoting com 98.5 5.8E-07 1.2E-11 92.4 11.4 124 179-304 318-441 (611)
107 KOG2003 TPR repeat-containing 98.5 3.2E-07 7E-12 92.7 9.3 128 171-300 488-615 (840)
108 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 6.8E-07 1.5E-11 90.5 11.6 69 202-272 70-141 (453)
109 KOG0548 Molecular co-chaperone 98.5 7.1E-07 1.5E-11 91.2 10.8 103 183-287 12-114 (539)
110 PF12688 TPR_5: Tetratrico pep 98.5 4.5E-06 9.8E-11 70.7 13.9 95 176-272 4-104 (120)
111 PRK11906 transcriptional regul 98.5 2.1E-06 4.5E-11 87.1 13.7 111 187-300 318-430 (458)
112 KOG2002 TPR-containing nuclear 98.5 2.9E-06 6.3E-11 91.6 15.4 131 176-308 202-338 (1018)
113 PRK10803 tol-pal system protei 98.5 3.1E-06 6.6E-11 80.6 13.9 95 206-301 141-241 (263)
114 PF12688 TPR_5: Tetratrico pep 98.5 3E-06 6.4E-11 71.8 12.3 93 207-301 1-99 (120)
115 PF09976 TPR_21: Tetratricopep 98.5 1.6E-06 3.4E-11 74.1 10.3 92 176-270 51-145 (145)
116 PF05843 Suf: Suppressor of fo 98.4 1.3E-06 2.8E-11 83.3 10.2 122 178-300 6-130 (280)
117 KOG2076 RNA polymerase III tra 98.4 4E-06 8.6E-11 89.9 14.5 125 175-301 175-304 (895)
118 COG4783 Putative Zn-dependent 98.4 5.4E-06 1.2E-10 84.2 13.7 125 171-297 338-464 (484)
119 KOG4162 Predicted calmodulin-b 98.3 2.5E-06 5.4E-11 90.3 10.7 97 180-278 691-789 (799)
120 KOG1156 N-terminal acetyltrans 98.3 1.7E-06 3.6E-11 90.2 9.2 108 186-295 20-127 (700)
121 KOG1174 Anaphase-promoting com 98.3 4.1E-06 9E-11 84.0 11.6 129 172-301 231-392 (564)
122 KOG0543 FKBP-type peptidyl-pro 98.3 3.4E-06 7.4E-11 84.0 10.9 98 176-274 260-357 (397)
123 PRK14720 transcript cleavage f 98.3 5.1E-06 1.1E-10 90.6 13.1 127 172-301 30-173 (906)
124 KOG4648 Uncharacterized conser 98.3 1.9E-06 4E-11 84.9 8.5 113 181-299 105-217 (536)
125 KOG1128 Uncharacterized conser 98.3 3.5E-06 7.5E-11 88.9 10.8 130 174-305 425-581 (777)
126 KOG1129 TPR repeat-containing 98.3 2.9E-06 6.3E-11 83.2 8.9 127 172-300 255-381 (478)
127 KOG0550 Molecular chaperone (D 98.3 1.8E-06 3.9E-11 86.4 7.6 118 182-301 212-345 (486)
128 COG2956 Predicted N-acetylgluc 98.3 1.2E-05 2.5E-10 78.7 12.9 123 177-301 145-273 (389)
129 PRK10866 outer membrane biogen 98.3 2.6E-05 5.5E-10 73.2 14.7 125 175-301 34-199 (243)
130 PF04733 Coatomer_E: Coatomer 98.3 6.3E-06 1.4E-10 79.3 10.8 117 179-297 137-255 (290)
131 PF13424 TPR_12: Tetratricopep 98.2 1.5E-06 3.2E-11 66.1 4.9 67 204-272 2-75 (78)
132 KOG0550 Molecular chaperone (D 98.2 3.8E-06 8.3E-11 84.1 8.8 122 178-301 174-311 (486)
133 KOG0495 HAT repeat protein [RN 98.2 1.4E-05 3E-10 83.8 12.9 126 174-301 652-777 (913)
134 KOG4234 TPR repeat-containing 98.2 2E-05 4.4E-10 72.9 12.0 108 183-292 105-217 (271)
135 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 2E-05 4.2E-10 79.3 12.1 95 171-267 198-292 (395)
136 KOG1156 N-terminal acetyltrans 98.1 1.6E-05 3.5E-10 83.0 11.2 127 177-305 45-171 (700)
137 PRK10153 DNA-binding transcrip 98.1 1.8E-05 3.9E-10 82.0 11.6 86 189-277 400-487 (517)
138 COG1729 Uncharacterized protei 98.1 5.6E-05 1.2E-09 72.1 13.9 103 176-280 144-252 (262)
139 KOG1127 TPR repeat-containing 98.1 9.1E-06 2E-10 88.1 9.5 125 179-304 498-657 (1238)
140 COG3071 HemY Uncharacterized e 98.1 5.8E-05 1.2E-09 75.2 14.1 127 172-304 262-388 (400)
141 COG4700 Uncharacterized protei 98.1 6.7E-05 1.5E-09 68.9 13.4 125 176-303 92-219 (251)
142 PLN03098 LPA1 LOW PSII ACCUMUL 98.1 9.7E-06 2.1E-10 82.3 8.8 70 168-238 70-142 (453)
143 KOG1174 Anaphase-promoting com 98.1 2.4E-05 5.3E-10 78.6 11.0 119 181-301 308-428 (564)
144 KOG1915 Cell cycle control pro 98.1 3.4E-05 7.4E-10 78.7 12.1 122 177-301 369-495 (677)
145 PF12569 NARP1: NMDA receptor- 98.1 6.2E-05 1.4E-09 78.1 14.1 124 176-301 197-329 (517)
146 COG0457 NrfG FOG: TPR repeat [ 98.1 0.00024 5.2E-09 57.6 14.8 118 182-301 139-260 (291)
147 PF13525 YfiO: Outer membrane 98.1 6.6E-05 1.4E-09 68.0 12.7 125 176-301 8-165 (203)
148 KOG0495 HAT repeat protein [RN 98.1 7.7E-05 1.7E-09 78.5 14.2 112 187-301 564-675 (913)
149 PF13512 TPR_18: Tetratricopep 98.0 0.0001 2.2E-09 64.4 12.4 104 176-281 13-137 (142)
150 PF13424 TPR_12: Tetratricopep 98.0 8.7E-06 1.9E-10 61.8 5.0 61 176-237 8-75 (78)
151 COG0457 NrfG FOG: TPR repeat [ 98.0 0.00029 6.3E-09 57.2 14.1 125 175-301 97-226 (291)
152 COG2956 Predicted N-acetylgluc 98.0 0.00014 3E-09 71.3 13.2 118 176-296 176-301 (389)
153 KOG4642 Chaperone-dependent E3 98.0 2.1E-05 4.6E-10 74.2 7.3 86 185-272 22-107 (284)
154 COG4785 NlpI Lipoprotein NlpI, 98.0 4.4E-05 9.5E-10 71.5 9.3 96 181-278 73-168 (297)
155 PF13428 TPR_14: Tetratricopep 97.9 2.1E-05 4.6E-10 54.4 5.3 39 209-248 3-41 (44)
156 PF13428 TPR_14: Tetratricopep 97.9 2.3E-05 5E-10 54.2 5.4 43 242-285 1-43 (44)
157 PF13431 TPR_17: Tetratricopep 97.9 1E-05 2.2E-10 53.6 3.4 32 231-263 2-33 (34)
158 PF12569 NARP1: NMDA receptor- 97.9 0.00024 5.2E-09 73.8 14.8 127 173-301 143-286 (517)
159 KOG1070 rRNA processing protei 97.9 0.00013 2.8E-09 81.6 13.4 122 178-301 1535-1658(1710)
160 PF04733 Coatomer_E: Coatomer 97.9 7.2E-05 1.6E-09 72.1 9.5 105 174-280 164-273 (290)
161 PLN03077 Protein ECB2; Provisi 97.9 0.00018 4E-09 77.9 13.6 119 179-301 595-715 (857)
162 PLN03218 maturation of RBCL 1; 97.8 0.00048 1E-08 77.0 16.6 119 180-301 586-708 (1060)
163 PRK10866 outer membrane biogen 97.8 0.00092 2E-08 62.8 15.9 125 176-301 72-236 (243)
164 PLN03081 pentatricopeptide (PP 97.8 0.00016 3.4E-09 76.7 12.0 121 178-301 396-552 (697)
165 PF14938 SNAP: Soluble NSF att 97.8 8.1E-05 1.7E-09 70.7 8.7 127 176-305 38-183 (282)
166 KOG0624 dsRNA-activated protei 97.8 0.00011 2.4E-09 72.7 9.4 99 177-277 42-140 (504)
167 KOG1127 TPR repeat-containing 97.8 0.00018 4E-09 78.4 11.6 106 181-287 10-119 (1238)
168 PF04184 ST7: ST7 protein; In 97.8 0.00022 4.7E-09 73.2 11.5 120 178-301 173-319 (539)
169 KOG4555 TPR repeat-containing 97.8 0.00065 1.4E-08 59.4 12.7 88 185-274 55-146 (175)
170 PF13525 YfiO: Outer membrane 97.8 0.0007 1.5E-08 61.3 13.7 121 176-297 45-198 (203)
171 COG1729 Uncharacterized protei 97.8 0.00021 4.6E-09 68.1 10.7 90 210-301 144-239 (262)
172 PF13431 TPR_17: Tetratricopep 97.7 3E-05 6.5E-10 51.4 3.3 34 195-229 1-34 (34)
173 KOG0376 Serine-threonine phosp 97.7 4.6E-05 1E-09 77.5 5.6 114 177-292 8-121 (476)
174 KOG4648 Uncharacterized conser 97.7 5.2E-05 1.1E-09 75.0 5.7 86 214-301 104-189 (536)
175 PLN03077 Protein ECB2; Provisi 97.7 0.00062 1.4E-08 73.8 14.2 117 178-301 529-649 (857)
176 PLN03081 pentatricopeptide (PP 97.7 0.00074 1.6E-08 71.6 14.3 120 177-301 263-384 (697)
177 PLN03218 maturation of RBCL 1; 97.7 0.0014 3E-08 73.5 16.8 122 177-301 618-743 (1060)
178 KOG0545 Aryl-hydrocarbon recep 97.6 0.00049 1.1E-08 65.6 11.0 94 185-280 190-301 (329)
179 PF14938 SNAP: Soluble NSF att 97.6 0.0003 6.5E-09 66.8 9.6 123 176-301 78-220 (282)
180 PF10300 DUF3808: Protein of u 97.6 0.0007 1.5E-08 69.4 12.3 113 187-301 247-371 (468)
181 KOG4555 TPR repeat-containing 97.6 0.0006 1.3E-08 59.6 9.7 87 213-301 49-139 (175)
182 KOG0624 dsRNA-activated protei 97.6 0.0013 2.8E-08 65.3 13.2 128 181-309 114-256 (504)
183 PF07719 TPR_2: Tetratricopept 97.6 0.00022 4.7E-09 45.6 5.2 31 244-275 3-33 (34)
184 PF07719 TPR_2: Tetratricopept 97.5 0.00023 4.9E-09 45.5 5.2 34 207-241 1-34 (34)
185 KOG3785 Uncharacterized conser 97.5 0.00031 6.7E-09 69.9 8.4 120 179-300 63-208 (557)
186 PF05843 Suf: Suppressor of fo 97.5 0.0012 2.7E-08 62.9 12.1 104 176-281 38-145 (280)
187 KOG2610 Uncharacterized conser 97.4 0.0016 3.5E-08 64.5 11.8 119 181-301 111-233 (491)
188 PF00515 TPR_1: Tetratricopept 97.4 0.00028 6.2E-09 45.5 4.5 31 244-275 3-33 (34)
189 PRK04841 transcriptional regul 97.4 0.0025 5.4E-08 68.9 14.2 124 176-301 455-597 (903)
190 PF00515 TPR_1: Tetratricopept 97.4 0.00034 7.3E-09 45.1 4.5 34 207-241 1-34 (34)
191 KOG4642 Chaperone-dependent E3 97.4 0.0004 8.6E-09 65.8 6.5 92 221-316 23-114 (284)
192 PRK04841 transcriptional regul 97.4 0.0037 8E-08 67.5 14.7 124 176-301 494-636 (903)
193 PF06552 TOM20_plant: Plant sp 97.3 0.00067 1.4E-08 61.6 7.4 69 224-292 7-84 (186)
194 KOG2796 Uncharacterized conser 97.3 0.0016 3.5E-08 62.7 10.0 123 177-301 181-310 (366)
195 KOG2396 HAT (Half-A-TPR) repea 97.2 0.0047 1E-07 63.6 13.1 93 190-283 88-180 (568)
196 KOG3824 Huntingtin interacting 97.2 0.00096 2.1E-08 65.4 7.5 78 173-251 116-193 (472)
197 PF13512 TPR_18: Tetratricopep 97.2 0.0076 1.6E-07 52.8 12.2 84 207-292 10-99 (142)
198 KOG0551 Hsp90 co-chaperone CNS 97.2 0.0013 2.8E-08 64.8 8.0 93 180-274 88-184 (390)
199 KOG2047 mRNA splicing factor [ 97.1 0.0067 1.5E-07 64.2 12.8 123 176-301 390-535 (835)
200 PF03704 BTAD: Bacterial trans 97.1 0.0074 1.6E-07 51.0 11.1 84 184-269 17-122 (146)
201 KOG3824 Huntingtin interacting 97.1 0.00091 2E-08 65.6 6.0 67 220-287 128-194 (472)
202 COG4700 Uncharacterized protei 97.1 0.013 2.8E-07 54.2 12.9 112 187-301 70-184 (251)
203 KOG1915 Cell cycle control pro 97.1 0.0064 1.4E-07 62.6 12.0 121 178-301 78-198 (677)
204 KOG2047 mRNA splicing factor [ 97.1 0.0068 1.5E-07 64.2 12.4 125 176-301 480-610 (835)
205 KOG1130 Predicted G-alpha GTPa 97.1 0.00068 1.5E-08 68.6 4.9 121 176-298 198-336 (639)
206 KOG4340 Uncharacterized conser 97.0 0.0034 7.4E-08 61.5 9.4 129 175-305 46-206 (459)
207 KOG4234 TPR repeat-containing 97.0 0.0026 5.6E-08 59.3 8.1 88 215-304 103-195 (271)
208 KOG2053 Mitochondrial inherita 97.0 0.0065 1.4E-07 66.0 11.7 110 186-298 22-131 (932)
209 KOG3081 Vesicle coat complex C 97.0 0.013 2.9E-07 56.3 12.6 115 181-298 145-262 (299)
210 KOG1308 Hsp70-interacting prot 96.9 0.00061 1.3E-08 67.2 3.3 92 181-274 122-213 (377)
211 KOG1941 Acetylcholine receptor 96.9 0.0027 5.8E-08 63.5 7.3 128 176-305 86-234 (518)
212 COG4105 ComL DNA uptake lipopr 96.9 0.034 7.5E-07 53.0 14.5 106 172-278 33-151 (254)
213 KOG2376 Signal recognition par 96.8 0.016 3.4E-07 60.8 12.4 115 177-301 83-199 (652)
214 KOG2376 Signal recognition par 96.8 0.0087 1.9E-07 62.6 10.5 109 185-303 24-136 (652)
215 PF08424 NRDE-2: NRDE-2, neces 96.8 0.044 9.6E-07 53.4 14.7 112 189-301 47-178 (321)
216 PF13181 TPR_8: Tetratricopept 96.8 0.0028 6.1E-08 40.5 4.4 30 244-274 3-32 (34)
217 COG3071 HemY Uncharacterized e 96.8 0.043 9.4E-07 55.1 14.6 121 178-301 89-211 (400)
218 KOG3081 Vesicle coat complex C 96.7 0.011 2.5E-07 56.8 10.1 91 187-279 187-278 (299)
219 PF13281 DUF4071: Domain of un 96.7 0.02 4.3E-07 57.5 12.2 127 173-301 179-329 (374)
220 PF03704 BTAD: Bacterial trans 96.7 0.036 7.9E-07 46.8 11.9 80 221-301 19-120 (146)
221 KOG4340 Uncharacterized conser 96.7 0.0079 1.7E-07 59.0 8.7 116 184-301 21-168 (459)
222 PF08424 NRDE-2: NRDE-2, neces 96.7 0.035 7.6E-07 54.1 13.3 96 193-289 5-111 (321)
223 PF02259 FAT: FAT domain; Int 96.7 0.04 8.7E-07 52.4 13.4 116 176-293 149-308 (352)
224 COG3118 Thioredoxin domain-con 96.6 0.03 6.4E-07 54.5 11.8 115 181-298 142-257 (304)
225 KOG3785 Uncharacterized conser 96.6 0.025 5.3E-07 56.7 11.4 88 179-269 29-117 (557)
226 KOG4507 Uncharacterized conser 96.6 0.008 1.7E-07 63.1 8.2 114 173-288 606-721 (886)
227 KOG2796 Uncharacterized conser 96.5 0.016 3.4E-07 56.0 9.6 112 175-288 214-334 (366)
228 PF13181 TPR_8: Tetratricopept 96.5 0.0048 1E-07 39.4 4.3 33 208-241 2-34 (34)
229 PF13281 DUF4071: Domain of un 96.5 0.029 6.2E-07 56.3 11.5 125 176-301 144-283 (374)
230 KOG1070 rRNA processing protei 96.5 0.036 7.8E-07 62.9 12.9 116 176-293 1567-1687(1710)
231 KOG1941 Acetylcholine receptor 96.4 0.012 2.6E-07 58.9 8.0 121 179-301 128-270 (518)
232 KOG2471 TPR repeat-containing 96.4 0.0067 1.5E-07 62.6 6.4 113 177-291 244-383 (696)
233 PF14561 TPR_20: Tetratricopep 96.4 0.033 7.2E-07 44.8 9.1 67 192-260 7-75 (90)
234 PF04781 DUF627: Protein of un 96.4 0.023 5E-07 47.8 8.4 93 179-272 2-107 (111)
235 KOG2396 HAT (Half-A-TPR) repea 96.3 0.063 1.4E-06 55.6 13.0 102 172-277 104-205 (568)
236 KOG2610 Uncharacterized conser 96.3 0.027 5.9E-07 56.1 10.0 118 181-300 145-270 (491)
237 COG5191 Uncharacterized conser 96.3 0.0072 1.6E-07 59.4 5.9 88 196-284 96-183 (435)
238 COG0790 FOG: TPR repeat, SEL1 96.3 0.092 2E-06 49.3 13.0 116 171-291 107-236 (292)
239 KOG1585 Protein required for f 96.3 0.078 1.7E-06 50.8 12.3 122 175-298 33-171 (308)
240 KOG0376 Serine-threonine phosp 96.3 0.0033 7.1E-08 64.3 3.3 80 221-301 17-96 (476)
241 COG4785 NlpI Lipoprotein NlpI, 96.2 0.022 4.8E-07 53.7 8.5 82 219-301 76-157 (297)
242 PF14561 TPR_20: Tetratricopep 96.0 0.048 1E-06 43.8 8.4 70 227-297 7-78 (90)
243 KOG0530 Protein farnesyltransf 96.0 0.13 2.8E-06 49.7 12.5 113 185-298 55-168 (318)
244 PRK10941 hypothetical protein; 95.9 0.07 1.5E-06 51.3 10.3 69 211-281 185-253 (269)
245 PF04184 ST7: ST7 protein; In 95.9 0.11 2.3E-06 53.9 12.1 106 175-281 261-384 (539)
246 COG3914 Spy Predicted O-linked 95.9 0.096 2.1E-06 55.1 11.8 113 179-292 73-191 (620)
247 smart00028 TPR Tetratricopepti 95.6 0.02 4.3E-07 33.5 3.7 29 245-274 4-32 (34)
248 COG0790 FOG: TPR repeat, SEL1 95.6 0.31 6.7E-06 45.7 13.3 109 187-301 91-215 (292)
249 PF13174 TPR_6: Tetratricopept 95.5 0.028 6.1E-07 35.2 4.2 30 245-275 3-32 (33)
250 KOG0545 Aryl-hydrocarbon recep 95.5 0.1 2.2E-06 50.2 9.5 91 209-301 180-288 (329)
251 KOG1130 Predicted G-alpha GTPa 95.5 0.087 1.9E-06 53.8 9.6 120 174-295 236-373 (639)
252 KOG0551 Hsp90 co-chaperone CNS 95.4 0.078 1.7E-06 52.6 8.9 93 211-305 85-181 (390)
253 COG2976 Uncharacterized protei 95.4 0.2 4.3E-06 46.4 10.9 119 179-301 57-183 (207)
254 PF14853 Fis1_TPR_C: Fis1 C-te 95.4 0.078 1.7E-06 38.8 6.6 36 209-245 3-38 (53)
255 smart00028 TPR Tetratricopepti 95.4 0.029 6.2E-07 32.8 3.7 32 208-240 2-33 (34)
256 PF10300 DUF3808: Protein of u 95.3 0.091 2E-06 54.0 9.4 117 171-289 265-401 (468)
257 PF13176 TPR_7: Tetratricopept 95.3 0.038 8.1E-07 36.5 4.3 23 246-269 3-25 (36)
258 KOG1308 Hsp70-interacting prot 95.2 0.007 1.5E-07 59.9 1.0 81 220-301 126-206 (377)
259 PF13176 TPR_7: Tetratricopept 95.2 0.038 8.3E-07 36.5 4.3 24 210-234 2-25 (36)
260 PF09986 DUF2225: Uncharacteri 95.2 0.35 7.6E-06 44.8 12.1 101 187-289 91-212 (214)
261 PF09613 HrpB1_HrpK: Bacterial 95.2 0.99 2.2E-05 40.4 14.3 111 182-297 19-129 (160)
262 COG4105 ComL DNA uptake lipopr 95.1 0.27 5.8E-06 47.0 11.3 81 208-290 35-121 (254)
263 PRK10941 hypothetical protein; 95.1 0.14 3.1E-06 49.1 9.6 71 175-246 183-253 (269)
264 KOG1550 Extracellular protein 95.0 0.17 3.7E-06 53.0 10.7 116 171-290 242-373 (552)
265 KOG1310 WD40 repeat protein [G 95.0 0.074 1.6E-06 55.6 7.6 89 188-277 389-479 (758)
266 COG4976 Predicted methyltransf 95.0 0.029 6.2E-07 53.3 4.3 64 180-244 2-65 (287)
267 PF13174 TPR_6: Tetratricopept 94.9 0.059 1.3E-06 33.7 4.3 31 209-240 2-32 (33)
268 KOG2471 TPR repeat-containing 94.9 0.064 1.4E-06 55.6 6.6 119 181-301 214-359 (696)
269 KOG1586 Protein required for f 94.8 0.27 5.8E-06 47.0 10.1 111 180-292 81-210 (288)
270 PF14853 Fis1_TPR_C: Fis1 C-te 94.8 0.19 4.1E-06 36.8 7.2 42 243-285 2-43 (53)
271 COG3898 Uncharacterized membra 94.8 0.72 1.6E-05 47.0 13.5 97 172-270 119-215 (531)
272 KOG2053 Mitochondrial inherita 94.7 0.39 8.5E-06 52.7 12.3 108 180-290 50-157 (932)
273 PF10373 EST1_DNA_bind: Est1 D 94.6 0.12 2.5E-06 47.9 7.3 62 227-289 1-62 (278)
274 KOG4507 Uncharacterized conser 94.6 0.063 1.4E-06 56.7 5.8 115 174-290 213-330 (886)
275 PF09613 HrpB1_HrpK: Bacterial 94.5 0.61 1.3E-05 41.7 11.3 72 221-293 23-94 (160)
276 PF11207 DUF2989: Protein of u 94.5 0.36 7.7E-06 44.8 10.0 54 206-262 140-197 (203)
277 COG3118 Thioredoxin domain-con 94.4 0.57 1.2E-05 45.8 11.6 126 171-300 166-295 (304)
278 KOG3364 Membrane protein invol 94.3 0.67 1.4E-05 40.8 10.8 90 192-282 17-110 (149)
279 PF02259 FAT: FAT domain; Int 94.2 0.63 1.4E-05 44.2 11.6 103 172-275 183-341 (352)
280 KOG1586 Protein required for f 94.2 0.6 1.3E-05 44.6 11.0 121 180-301 41-178 (288)
281 PF04910 Tcf25: Transcriptiona 94.0 1.2 2.6E-05 44.4 13.5 116 177-293 44-194 (360)
282 KOG3617 WD40 and TPR repeat-co 93.9 0.39 8.4E-06 52.7 10.3 96 175-272 860-996 (1416)
283 COG4976 Predicted methyltransf 93.8 0.087 1.9E-06 50.1 4.7 63 214-278 2-64 (287)
284 KOG1550 Extracellular protein 93.7 1.2 2.5E-05 46.9 13.2 112 171-288 286-407 (552)
285 KOG3617 WD40 and TPR repeat-co 93.6 0.57 1.2E-05 51.5 10.8 122 178-301 805-991 (1416)
286 PF13374 TPR_10: Tetratricopep 93.5 0.2 4.2E-06 32.7 4.8 29 243-272 3-31 (42)
287 COG5191 Uncharacterized conser 93.4 0.098 2.1E-06 51.7 4.3 81 171-251 105-185 (435)
288 COG3914 Spy Predicted O-linked 93.1 0.68 1.5E-05 48.9 10.3 115 187-301 45-166 (620)
289 PF10602 RPN7: 26S proteasome 93.0 0.82 1.8E-05 41.0 9.4 24 178-201 41-64 (177)
290 PF08631 SPO22: Meiosis protei 93.0 2.4 5.2E-05 40.3 13.1 116 184-301 4-145 (278)
291 KOG1914 mRNA cleavage and poly 93.0 2.3 4.9E-05 45.0 13.6 126 173-299 366-494 (656)
292 KOG1914 mRNA cleavage and poly 92.9 1.9 4.2E-05 45.4 13.0 127 174-301 329-459 (656)
293 COG2976 Uncharacterized protei 92.8 2.5 5.5E-05 39.2 12.3 97 177-276 93-192 (207)
294 PF13374 TPR_10: Tetratricopep 92.5 0.32 7E-06 31.6 4.7 29 208-237 3-31 (42)
295 PF12862 Apc5: Anaphase-promot 92.5 1.6 3.5E-05 34.7 9.7 54 220-274 10-72 (94)
296 PF07079 DUF1347: Protein of u 92.4 1.5 3.3E-05 45.4 11.3 116 180-300 386-518 (549)
297 KOG1585 Protein required for f 92.3 2.1 4.5E-05 41.4 11.5 120 179-301 77-214 (308)
298 KOG1258 mRNA processing protei 92.2 3.5 7.5E-05 43.7 14.0 120 173-293 366-491 (577)
299 PF10373 EST1_DNA_bind: Est1 D 92.2 0.47 1E-05 43.9 7.0 62 192-254 1-62 (278)
300 KOG2300 Uncharacterized conser 92.1 2.4 5.2E-05 44.3 12.5 125 177-301 11-151 (629)
301 KOG1258 mRNA processing protei 91.9 2.7 5.8E-05 44.5 12.7 112 188-300 60-174 (577)
302 KOG1310 WD40 repeat protein [G 91.8 0.34 7.3E-06 50.9 6.0 80 222-301 388-469 (758)
303 smart00386 HAT HAT (Half-A-TPR 91.5 0.55 1.2E-05 28.7 4.7 21 225-245 4-24 (33)
304 smart00386 HAT HAT (Half-A-TPR 91.0 0.55 1.2E-05 28.7 4.3 32 257-288 1-32 (33)
305 KOG0530 Protein farnesyltransf 90.9 2.2 4.9E-05 41.4 10.1 90 187-294 40-129 (318)
306 KOG4814 Uncharacterized conser 90.5 1.7 3.8E-05 46.6 9.8 93 178-272 359-457 (872)
307 COG2912 Uncharacterized conser 90.4 1.7 3.6E-05 42.0 8.9 62 218-280 191-252 (269)
308 KOG3364 Membrane protein invol 90.0 2 4.3E-05 37.9 8.2 69 177-246 36-109 (149)
309 TIGR02561 HrpB1_HrpK type III 90.0 3.8 8.2E-05 36.5 10.1 71 186-258 23-93 (153)
310 PF11207 DUF2989: Protein of u 89.7 2.7 5.9E-05 39.0 9.4 79 216-297 115-198 (203)
311 PF07720 TPR_3: Tetratricopept 89.0 1.4 3E-05 29.7 5.1 30 245-275 4-35 (36)
312 PF04910 Tcf25: Transcriptiona 88.9 3.2 7E-05 41.4 10.1 95 176-274 106-224 (360)
313 PF04781 DUF627: Protein of un 88.9 2.5 5.5E-05 35.6 7.8 87 214-301 3-102 (111)
314 KOG3807 Predicted membrane pro 88.9 2.7 5.8E-05 42.3 9.2 48 187-237 198-245 (556)
315 KOG0529 Protein geranylgeranyl 88.8 4.8 0.0001 41.1 11.1 100 188-288 90-194 (421)
316 PF07720 TPR_3: Tetratricopept 88.5 1.5 3.3E-05 29.4 5.1 33 208-241 2-36 (36)
317 PF09986 DUF2225: Uncharacteri 88.1 5.9 0.00013 36.7 10.6 88 221-309 90-197 (214)
318 KOG2422 Uncharacterized conser 87.9 6.4 0.00014 41.9 11.6 95 179-274 348-450 (665)
319 PF10602 RPN7: 26S proteasome 87.9 9.9 0.00021 34.0 11.6 93 207-301 36-137 (177)
320 PF12968 DUF3856: Domain of Un 87.9 11 0.00024 32.8 11.1 80 221-301 22-124 (144)
321 COG3629 DnrI DNA-binding trans 87.6 3.2 6.9E-05 40.3 8.7 64 207-272 153-216 (280)
322 PF12968 DUF3856: Domain of Un 87.2 5 0.00011 34.8 8.7 85 186-272 22-129 (144)
323 TIGR02561 HrpB1_HrpK type III 85.9 18 0.00039 32.2 11.8 72 221-293 23-94 (153)
324 KOG3807 Predicted membrane pro 85.5 12 0.00027 37.7 11.7 78 221-301 197-299 (556)
325 COG3898 Uncharacterized membra 85.4 19 0.00041 37.1 13.0 116 180-301 270-387 (531)
326 PF04053 Coatomer_WDAD: Coatom 85.3 3.1 6.8E-05 42.7 7.8 32 239-271 344-375 (443)
327 PF08631 SPO22: Meiosis protei 84.4 27 0.00058 33.1 13.3 97 176-274 38-152 (278)
328 KOG0529 Protein geranylgeranyl 84.0 17 0.00037 37.2 12.1 105 187-292 42-160 (421)
329 COG1747 Uncharacterized N-term 83.9 19 0.00041 38.3 12.5 113 176-291 102-253 (711)
330 KOG4814 Uncharacterized conser 83.8 6.5 0.00014 42.4 9.4 87 212-300 359-451 (872)
331 PF12862 Apc5: Anaphase-promot 83.6 8.8 0.00019 30.5 8.2 60 185-245 10-80 (94)
332 COG2912 Uncharacterized conser 83.2 2.7 5.8E-05 40.6 5.8 71 175-246 183-253 (269)
333 PF07721 TPR_4: Tetratricopept 83.0 1.6 3.4E-05 26.8 2.8 20 246-266 5-24 (26)
334 KOG2300 Uncharacterized conser 81.8 32 0.0007 36.3 13.2 126 176-306 326-474 (629)
335 KOG0890 Protein kinase of the 81.6 8.6 0.00019 46.7 10.1 112 176-291 1673-1803(2382)
336 PF11846 DUF3366: Domain of un 81.3 7.9 0.00017 34.5 7.9 51 224-276 127-177 (193)
337 PF09670 Cas_Cas02710: CRISPR- 80.4 26 0.00056 35.2 12.0 58 178-236 136-197 (379)
338 PF07721 TPR_4: Tetratricopept 78.6 2.7 5.9E-05 25.7 2.8 25 208-233 2-26 (26)
339 COG5107 RNA14 Pre-mRNA 3'-end 78.5 20 0.00044 37.5 10.5 108 185-293 409-518 (660)
340 PF07079 DUF1347: Protein of u 78.3 35 0.00076 35.7 12.1 84 211-297 383-482 (549)
341 PF10516 SHNi-TPR: SHNi-TPR; 76.9 4.4 9.5E-05 27.7 3.7 29 243-272 2-30 (38)
342 COG4455 ImpE Protein of avirul 76.4 54 0.0012 31.4 11.9 66 183-249 11-76 (273)
343 COG4649 Uncharacterized protei 76.1 35 0.00075 31.7 10.3 125 175-301 60-191 (221)
344 PRK13184 pknD serine/threonine 76.1 14 0.0003 41.7 9.3 80 221-301 488-576 (932)
345 PF11846 DUF3366: Domain of un 76.0 13 0.00028 33.1 7.7 52 189-242 127-178 (193)
346 COG3947 Response regulator con 75.5 12 0.00026 37.1 7.6 46 256-301 292-337 (361)
347 COG2909 MalT ATP-dependent tra 75.5 65 0.0014 36.1 13.9 118 173-291 415-551 (894)
348 cd02682 MIT_AAA_Arch MIT: doma 75.3 24 0.00051 27.8 7.9 20 224-243 29-48 (75)
349 PF00244 14-3-3: 14-3-3 protei 75.0 5.1 0.00011 37.6 4.9 47 224-272 149-198 (236)
350 KOG0546 HSP90 co-chaperone CPR 75.0 4.2 9E-05 40.8 4.5 70 176-246 278-347 (372)
351 PF13041 PPR_2: PPR repeat fam 74.6 15 0.00033 25.2 6.1 41 242-283 3-44 (50)
352 smart00299 CLH Clathrin heavy 74.4 49 0.0011 27.4 11.0 50 181-232 15-64 (140)
353 PF10345 Cohesin_load: Cohesin 74.3 76 0.0016 33.7 14.0 122 177-300 63-202 (608)
354 PF10579 Rapsyn_N: Rapsyn N-te 73.4 15 0.00031 29.4 6.3 51 221-272 19-72 (80)
355 COG3947 Response regulator con 73.4 10 0.00022 37.6 6.5 73 187-271 269-341 (361)
356 PF10579 Rapsyn_N: Rapsyn N-te 73.1 21 0.00046 28.5 7.2 41 256-296 19-62 (80)
357 COG4455 ImpE Protein of avirul 72.7 27 0.00059 33.4 9.0 56 221-277 14-69 (273)
358 PRK15180 Vi polysaccharide bio 72.5 21 0.00046 37.7 8.9 102 185-287 710-820 (831)
359 KOG0128 RNA-binding protein SA 71.9 58 0.0013 36.3 12.4 102 189-292 95-198 (881)
360 KOG2422 Uncharacterized conser 71.9 1E+02 0.0022 33.3 13.7 115 176-292 287-431 (665)
361 KOG0546 HSP90 co-chaperone CPR 71.8 4.9 0.00011 40.4 4.1 109 183-293 232-359 (372)
362 cd02681 MIT_calpain7_1 MIT: do 71.0 7.4 0.00016 30.5 4.2 17 220-236 18-34 (76)
363 COG3629 DnrI DNA-binding trans 70.9 15 0.00032 35.8 7.1 61 176-237 156-216 (280)
364 cd02680 MIT_calpain7_2 MIT: do 70.3 7.9 0.00017 30.4 4.2 16 221-236 19-34 (75)
365 PLN03138 Protein TOC75; Provis 69.7 13 0.00028 41.1 7.1 13 193-205 167-179 (796)
366 COG4649 Uncharacterized protei 68.9 1E+02 0.0022 28.7 12.4 108 177-288 98-211 (221)
367 PF10345 Cohesin_load: Cohesin 68.9 58 0.0013 34.5 11.7 84 190-275 38-131 (608)
368 PF02184 HAT: HAT (Half-A-TPR) 68.3 8.8 0.00019 25.5 3.4 28 188-216 2-29 (32)
369 PF02184 HAT: HAT (Half-A-TPR) 68.0 10 0.00022 25.1 3.7 28 258-286 2-29 (32)
370 PF04212 MIT: MIT (microtubule 67.9 13 0.00029 27.7 4.9 13 190-202 3-15 (69)
371 PRK13184 pknD serine/threonine 67.7 39 0.00084 38.2 10.4 96 181-278 483-587 (932)
372 PF04190 DUF410: Protein of un 66.7 99 0.0021 29.3 11.7 122 170-292 87-243 (260)
373 smart00101 14_3_3 14-3-3 homol 66.4 32 0.0007 32.7 8.3 49 224-272 144-200 (244)
374 smart00101 14_3_3 14-3-3 homol 66.4 14 0.00031 35.0 5.9 49 189-237 144-200 (244)
375 PF14863 Alkyl_sulf_dimr: Alky 65.0 36 0.00078 29.7 7.7 46 208-254 71-116 (141)
376 PF00244 14-3-3: 14-3-3 protei 64.7 22 0.00048 33.3 6.8 47 190-236 143-197 (236)
377 TIGR03504 FimV_Cterm FimV C-te 64.2 9.2 0.0002 26.9 3.1 25 177-201 3-27 (44)
378 COG5107 RNA14 Pre-mRNA 3'-end 64.2 1.3E+02 0.0028 31.8 12.5 103 171-275 430-534 (660)
379 KOG2581 26S proteasome regulat 64.0 63 0.0014 33.5 10.1 58 221-279 222-283 (493)
380 PF08311 Mad3_BUB1_I: Mad3/BUB 64.0 89 0.0019 26.4 11.2 108 190-301 2-123 (126)
381 TIGR02996 rpt_mate_G_obs repea 64.0 14 0.00031 26.0 4.0 32 230-262 4-35 (42)
382 KOG0276 Vesicle coat complex C 63.9 47 0.001 36.0 9.5 108 176-301 617-745 (794)
383 PRK15180 Vi polysaccharide bio 63.6 27 0.00058 37.0 7.5 48 186-234 302-349 (831)
384 KOG0985 Vesicle coat protein c 63.3 84 0.0018 36.3 11.6 85 205-297 1102-1186(1666)
385 PF04190 DUF410: Protein of un 63.0 1.1E+02 0.0023 29.1 11.2 124 177-301 14-165 (260)
386 cd02678 MIT_VPS4 MIT: domain c 62.4 54 0.0012 25.1 7.5 41 190-239 4-44 (75)
387 PF09205 DUF1955: Domain of un 62.4 39 0.00083 30.1 7.3 81 187-273 70-150 (161)
388 PLN03138 Protein TOC75; Provis 62.0 6.3 0.00014 43.4 3.0 15 227-241 166-180 (796)
389 cd02681 MIT_calpain7_1 MIT: do 61.9 19 0.00041 28.2 4.9 15 224-238 29-43 (76)
390 smart00745 MIT Microtubule Int 61.7 44 0.00096 25.2 6.9 43 189-240 5-47 (77)
391 smart00671 SEL1 Sel1-like repe 61.6 14 0.00031 23.1 3.5 15 223-237 20-34 (36)
392 cd02683 MIT_1 MIT: domain cont 61.3 16 0.00034 28.6 4.3 15 221-235 19-33 (77)
393 PRK15490 Vi polysaccharide bio 61.3 27 0.00058 37.4 7.3 78 186-267 21-98 (578)
394 KOG0921 Dosage compensation co 61.1 7.5 0.00016 43.6 3.2 6 68-73 1130-1135(1282)
395 TIGR02710 CRISPR-associated pr 60.6 1.2E+02 0.0025 31.0 11.4 55 177-232 134-195 (380)
396 COG2909 MalT ATP-dependent tra 60.6 65 0.0014 36.1 10.2 91 206-298 414-518 (894)
397 PRK15490 Vi polysaccharide bio 60.6 34 0.00075 36.5 8.0 56 179-240 48-103 (578)
398 KOG4014 Uncharacterized conser 60.1 32 0.00069 32.2 6.7 78 207-288 68-155 (248)
399 PF12854 PPR_1: PPR repeat 60.1 20 0.00043 23.2 4.0 27 241-268 6-32 (34)
400 KOG3783 Uncharacterized conser 59.0 65 0.0014 34.2 9.5 61 212-274 454-522 (546)
401 PF15015 NYD-SP12_N: Spermatog 58.7 36 0.00078 35.4 7.4 109 180-289 183-311 (569)
402 KOG2041 WD40 repeat protein [G 58.4 20 0.00043 39.4 5.7 51 242-301 796-846 (1189)
403 KOG3783 Uncharacterized conser 58.0 39 0.00084 35.8 7.6 94 190-287 250-348 (546)
404 cd02677 MIT_SNX15 MIT: domain 57.8 15 0.00034 28.5 3.7 16 221-236 19-34 (75)
405 PHA02537 M terminase endonucle 57.6 11 0.00024 35.6 3.4 95 181-276 91-211 (230)
406 PF10516 SHNi-TPR: SHNi-TPR; 57.5 19 0.00041 24.5 3.7 29 208-237 2-30 (38)
407 PF14863 Alkyl_sulf_dimr: Alky 57.4 40 0.00086 29.4 6.6 60 232-293 61-120 (141)
408 KOG3616 Selective LIM binding 57.0 73 0.0016 35.6 9.6 113 179-301 667-815 (1636)
409 PF09205 DUF1955: Domain of un 56.6 95 0.0021 27.6 8.7 112 185-301 14-144 (161)
410 cd02656 MIT MIT: domain contai 55.8 69 0.0015 24.2 7.0 42 190-240 4-45 (75)
411 smart00745 MIT Microtubule Int 55.3 23 0.0005 26.8 4.3 16 224-239 5-20 (77)
412 cd02678 MIT_VPS4 MIT: domain c 54.5 34 0.00073 26.2 5.1 14 225-238 4-17 (75)
413 KOG1839 Uncharacterized protei 54.4 51 0.0011 38.2 8.4 117 178-296 978-1118(1236)
414 PF13226 DUF4034: Domain of un 54.2 1.7E+02 0.0038 28.4 11.0 111 182-292 9-148 (277)
415 cd02680 MIT_calpain7_2 MIT: do 54.2 25 0.00053 27.6 4.3 10 190-199 4-13 (75)
416 PF05053 Menin: Menin; InterP 54.1 45 0.00097 35.7 7.4 61 176-237 280-347 (618)
417 TIGR02996 rpt_mate_G_obs repea 54.1 31 0.00066 24.3 4.3 36 194-230 3-38 (42)
418 cd02656 MIT MIT: domain contai 54.1 25 0.00054 26.6 4.3 13 225-237 4-16 (75)
419 PF08311 Mad3_BUB1_I: Mad3/BUB 52.9 64 0.0014 27.2 7.0 73 190-270 43-126 (126)
420 PF04053 Coatomer_WDAD: Coatom 52.5 1.4E+02 0.0031 30.8 10.7 74 210-301 298-371 (443)
421 KOG1497 COP9 signalosome, subu 52.3 2.5E+02 0.0054 28.4 11.8 91 176-269 106-210 (399)
422 KOG4279 Serine/threonine prote 52.1 8.1 0.00018 42.5 1.7 116 176-293 204-336 (1226)
423 PF08238 Sel1: Sel1 repeat; I 51.6 33 0.00071 21.8 4.0 15 223-237 23-37 (39)
424 PF12753 Nro1: Nuclear pore co 50.8 36 0.00077 34.8 5.9 28 225-254 335-362 (404)
425 KOG4014 Uncharacterized conser 50.6 64 0.0014 30.2 7.0 90 205-297 32-125 (248)
426 KOG2114 Vacuolar assembly/sort 49.7 75 0.0016 35.5 8.4 80 207-294 368-448 (933)
427 cd02683 MIT_1 MIT: domain cont 49.6 1E+02 0.0022 24.0 7.2 43 190-241 4-46 (77)
428 KOG0128 RNA-binding protein SA 49.5 39 0.00085 37.5 6.3 104 193-297 298-401 (881)
429 cd02684 MIT_2 MIT: domain cont 49.2 43 0.00092 25.9 5.0 12 225-236 4-15 (75)
430 KOG0985 Vesicle coat protein c 48.9 84 0.0018 36.3 8.7 68 221-299 1088-1155(1666)
431 PF15015 NYD-SP12_N: Spermatog 48.5 2.4E+02 0.0053 29.6 11.4 77 222-298 197-283 (569)
432 smart00777 Mad3_BUB1_I Mad3/BU 48.3 99 0.0021 26.5 7.5 43 259-301 79-123 (125)
433 cd02682 MIT_AAA_Arch MIT: doma 48.2 32 0.00069 27.0 4.1 45 225-278 4-48 (75)
434 PF11817 Foie-gras_1: Foie gra 48.2 90 0.0019 29.1 7.9 24 211-235 182-205 (247)
435 KOG0890 Protein kinase of the 48.1 1.2E+02 0.0026 37.5 10.4 65 205-273 1668-1732(2382)
436 PRK15326 type III secretion sy 48.0 96 0.0021 24.8 6.8 40 214-253 13-52 (80)
437 PF11817 Foie-gras_1: Foie gra 47.1 74 0.0016 29.7 7.2 58 175-233 180-243 (247)
438 PF12739 TRAPPC-Trs85: ER-Golg 46.9 2.6E+02 0.0056 28.2 11.5 107 178-287 213-351 (414)
439 cd02679 MIT_spastin MIT: domai 46.2 35 0.00075 27.0 4.1 17 188-204 4-20 (79)
440 COG5536 BET4 Protein prenyltra 45.9 58 0.0013 32.1 6.3 120 181-301 39-171 (328)
441 PF01535 PPR: PPR repeat; Int 45.8 33 0.00071 20.4 3.2 24 247-271 5-28 (31)
442 cd02677 MIT_SNX15 MIT: domain 45.4 1.4E+02 0.0031 23.1 8.1 42 190-240 4-45 (75)
443 PF05053 Menin: Menin; InterP 45.4 81 0.0017 33.8 7.7 65 206-271 276-346 (618)
444 cd02679 MIT_spastin MIT: domai 43.0 52 0.0011 26.0 4.6 17 223-239 4-20 (79)
445 COG3107 LppC Putative lipoprot 42.6 1.6E+02 0.0035 31.5 9.3 104 189-292 44-151 (604)
446 PF15469 Sec5: Exocyst complex 41.7 1.5E+02 0.0032 26.2 8.0 20 220-239 98-117 (182)
447 TIGR00756 PPR pentatricopeptid 39.9 67 0.0014 19.2 4.0 22 249-271 7-28 (35)
448 TIGR03504 FimV_Cterm FimV C-te 39.4 1.3E+02 0.0029 21.0 5.8 22 248-270 5-26 (44)
449 PF09797 NatB_MDM20: N-acetylt 39.4 70 0.0015 31.5 6.0 43 224-267 199-241 (365)
450 COG4941 Predicted RNA polymera 38.7 1.7E+02 0.0037 29.7 8.4 38 242-280 365-402 (415)
451 KOG4279 Serine/threonine prote 38.7 61 0.0013 36.1 5.7 86 187-273 257-351 (1226)
452 KOG1839 Uncharacterized protei 38.4 81 0.0018 36.7 6.8 111 189-301 954-1081(1236)
453 KOG3616 Selective LIM binding 38.4 64 0.0014 36.0 5.8 117 172-300 764-905 (1636)
454 cd02684 MIT_2 MIT: domain cont 38.4 73 0.0016 24.6 4.7 47 189-245 3-49 (75)
455 PF10255 Paf67: RNA polymerase 37.5 65 0.0014 33.0 5.5 98 176-275 125-231 (404)
456 PF01239 PPTA: Protein prenylt 37.5 1E+02 0.0022 19.2 4.6 21 228-248 3-23 (31)
457 PF04212 MIT: MIT (microtubule 37.1 86 0.0019 23.2 4.9 13 225-237 3-15 (69)
458 PF09670 Cas_Cas02710: CRISPR- 36.9 2.3E+02 0.005 28.4 9.3 57 214-272 138-198 (379)
459 KOG0739 AAA+-type ATPase [Post 36.9 1.8E+02 0.0038 29.4 8.1 48 189-245 7-54 (439)
460 PHA00370 III attachment protei 35.9 82 0.0018 30.5 5.5 14 257-270 253-266 (297)
461 smart00299 CLH Clathrin heavy 35.8 2.5E+02 0.0053 23.1 8.0 75 221-298 20-103 (140)
462 COG5187 RPN7 26S proteasome re 35.8 2.6E+02 0.0057 28.0 9.0 125 182-314 88-223 (412)
463 COG2015 Alkyl sulfatase and re 35.2 1.3E+02 0.0029 31.9 7.3 54 242-297 453-506 (655)
464 KOG3074 Transcriptional regula 34.9 27 0.00059 33.3 2.1 19 277-295 155-173 (263)
465 KOG2581 26S proteasome regulat 33.6 84 0.0018 32.6 5.5 60 182-242 218-281 (493)
466 PF04348 LppC: LppC putative l 31.6 16 0.00034 38.5 0.0 106 190-296 6-117 (536)
467 PF07219 HemY_N: HemY protein 31.5 2.3E+02 0.0051 23.0 7.0 43 248-291 65-107 (108)
468 COG1747 Uncharacterized N-term 31.2 3.1E+02 0.0067 29.6 9.2 81 187-272 80-160 (711)
469 PF07219 HemY_N: HemY protein 31.1 2.4E+02 0.0051 22.9 7.0 38 220-258 71-108 (108)
470 KOG1538 Uncharacterized conser 30.8 93 0.002 34.2 5.5 42 256-300 786-827 (1081)
471 cd00280 TRFH Telomeric Repeat 30.6 4.3E+02 0.0094 24.6 9.1 63 190-253 86-155 (200)
472 KOG0687 26S proteasome regulat 30.3 4.7E+02 0.01 26.6 9.9 122 177-299 108-243 (393)
473 KOG2758 Translation initiation 29.4 2.7E+02 0.0058 28.3 8.0 79 191-271 113-195 (432)
474 PF09797 NatB_MDM20: N-acetylt 28.6 3.1E+02 0.0068 26.9 8.6 46 188-234 198-243 (365)
475 PF04090 RNA_pol_I_TF: RNA pol 28.0 4.9E+02 0.011 24.1 11.5 113 177-290 45-191 (199)
476 PF13812 PPR_3: Pentatricopept 27.6 1.5E+02 0.0031 17.9 4.4 23 248-271 7-29 (34)
477 PF07163 Pex26: Pex26 protein; 26.2 6.5E+02 0.014 25.0 10.6 121 175-298 37-179 (309)
478 COG5091 SGT1 Suppressor of G2 26.2 1.5E+02 0.0032 29.4 5.5 91 185-276 7-112 (368)
479 PF10952 DUF2753: Protein of u 25.2 2.6E+02 0.0056 24.5 6.2 26 177-202 5-30 (140)
480 PRK12798 chemotaxis protein; R 24.6 8E+02 0.017 25.4 11.5 107 184-291 123-236 (421)
481 KOG1464 COP9 signalosome, subu 24.5 2E+02 0.0044 28.6 6.1 111 188-301 42-169 (440)
482 PF00637 Clathrin: Region in C 23.5 33 0.00071 28.5 0.5 51 181-232 15-66 (143)
483 PF12753 Nro1: Nuclear pore co 23.2 95 0.0021 31.8 3.8 46 189-237 334-391 (404)
484 TIGR01987 HI0074 nucleotidyltr 23.0 4.6E+02 0.01 22.2 7.5 14 189-202 5-18 (123)
485 KOG0687 26S proteasome regulat 22.9 8E+02 0.017 25.0 10.0 116 190-313 81-211 (393)
486 KOG0889 Histone acetyltransfer 22.4 5.3E+02 0.011 33.8 10.2 100 190-290 2736-2859(3550)
487 PF12583 TPPII_N: Tripeptidyl 22.3 1.8E+02 0.0039 25.6 4.8 38 215-252 83-120 (139)
488 KOG3024 Uncharacterized conser 22.3 7.8E+02 0.017 24.5 10.1 109 180-294 53-173 (312)
489 cd00280 TRFH Telomeric Repeat 22.1 6.5E+02 0.014 23.5 9.1 71 224-295 85-162 (200)
490 KOG2063 Vacuolar assembly/sort 21.9 4.9E+02 0.011 29.5 9.2 110 179-289 510-638 (877)
491 KOG1920 IkappaB kinase complex 21.9 3.3E+02 0.0072 31.9 7.9 133 178-325 957-1113(1265)
492 COG5536 BET4 Protein prenyltra 21.0 2.4E+02 0.0053 27.9 5.9 103 189-293 90-203 (328)
493 TIGR02710 CRISPR-associated pr 20.8 3.6E+02 0.0077 27.5 7.3 69 212-282 135-210 (380)
494 KOG2908 26S proteasome regulat 20.5 9.2E+02 0.02 24.6 11.7 122 192-315 4-153 (380)
495 KOG2041 WD40 repeat protein [G 20.3 1.8E+02 0.0039 32.4 5.3 92 163-268 786-877 (1189)
496 PF13934 ELYS: Nuclear pore co 20.0 6.2E+02 0.013 23.4 8.4 80 180-268 85-165 (226)
No 1
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.59 E-value=2.7e-14 Score=122.89 Aligned_cols=113 Identities=12% Similarity=-0.012 Sum_probs=99.7
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~ 255 (331)
..+++..+...|++++|..+|++++..+|.++.++.++|.++.. .|++++|+.+|++|++++|+++.++++++.++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~- 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM-LKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM- 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-
Confidence 45678888899999999999999999999999999999988665 8999999999999999999999999888888887
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020094 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290 (331)
Q Consensus 256 ~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~l 290 (331)
.|++++|+.+|++|++++|+++..+.+.+.+...+
T Consensus 105 ~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999888888877654
No 2
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.51 E-value=2.3e-13 Score=126.26 Aligned_cols=123 Identities=18% Similarity=0.215 Sum_probs=114.1
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~ 255 (331)
...+|.-|...|++..|+.-+++||+.+|++..++..+|.++. ..|+.+.|.+.|++|+.++|++++|+++|+++++.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq-~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~- 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQ-KLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA- 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh-
Confidence 3457778999999999999999999999999999999998854 59999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 256 HKDASRAESYFDQAVKSAP---DDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 256 ~Gd~deA~~yfekAL~ldP---~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
+|++++|..+|++|++. | ....++.|++.|..+.|++..+++.++
T Consensus 116 qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ 163 (250)
T COG3063 116 QGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLK 163 (250)
T ss_pred CCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHH
Confidence 99999999999999986 4 667899999999999999999998887
No 3
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.50 E-value=3.7e-13 Score=122.10 Aligned_cols=115 Identities=13% Similarity=0.144 Sum_probs=107.2
Q ss_pred CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--HHHHH
Q 020094 186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD--ASRAE 263 (331)
Q Consensus 186 ~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd--~deA~ 263 (331)
.++.++++..|+++++.+|+++..|..+|.++.. .+++++|+..|++|++++|+++.++..+|.+++...|+ +++|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~-~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLW-RNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 3567999999999999999999999999998655 99999999999999999999999999999987554777 59999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 264 SYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 264 ~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
..++++++++|++..++..+|..+...|++++|...++
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999999998887
No 4
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.49 E-value=9.3e-14 Score=142.78 Aligned_cols=129 Identities=13% Similarity=0.150 Sum_probs=99.1
Q ss_pred CCcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020094 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 171 g~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ 250 (331)
.+.-..+|+|-+|+.+|..+-|+.+|+++|++.|+.++++.|+|.+|.+ .|+..+|+.+|.+|+.+.|+.++++++++.
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd-~G~V~ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKD-KGSVTEAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHh-ccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 4444566777777777777777777777777777777777777777776 677777777777777777777777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 251 ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
++.+ ++.+++|..+|++|++..|.-+..+-+||.+|.+.|+.++|...++
T Consensus 363 i~~E-~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yk 412 (966)
T KOG4626|consen 363 IYRE-QGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYK 412 (966)
T ss_pred HHHH-hccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHH
Confidence 7777 7777777777777777777777777777777777777777776666
No 5
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.48 E-value=4e-13 Score=115.63 Aligned_cols=107 Identities=11% Similarity=0.085 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020094 190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQA 269 (331)
Q Consensus 190 ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekA 269 (331)
.--+.+|+++++++|++ +.++|.++.. .|++++|+.+|++++.++|.+..+|..+|.++.. .|++++|+.+|+++
T Consensus 10 ~~~~~~~~~al~~~p~~---~~~~g~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~y~~A 84 (144)
T PRK15359 10 KIPEDILKQLLSVDPET---VYASGYASWQ-EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM-LKEYTTAINFYGHA 84 (144)
T ss_pred CCHHHHHHHHHHcCHHH---HHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHH
Confidence 44578999999999986 5567878766 9999999999999999999999999999999998 99999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 270 VKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 270 L~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
++++|+++.+++++|.++...|+.++|...++
T Consensus 85 l~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~ 116 (144)
T PRK15359 85 LMLDASHPEPVYQTGVCLKMMGEPGLAREAFQ 116 (144)
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999998887
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.48 E-value=8.9e-13 Score=136.88 Aligned_cols=124 Identities=19% Similarity=0.135 Sum_probs=66.4
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~ 255 (331)
..+++.+|...+++++|+.+|++++.++|+++..+.++|.++.. .|++++|+.+|+++++++|+++.+++.++.+++.
T Consensus 334 ~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~- 411 (615)
T TIGR00990 334 LNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLE-LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI- 411 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Confidence 34445555555555555555555555555555555555555433 5555555555555555555555555555555554
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 256 ~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
.|++++|+.+|+++++++|++..++..+|.++.+.|++++|...++
T Consensus 412 ~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~ 457 (615)
T TIGR00990 412 KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFR 457 (615)
T ss_pred cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5555555555555555555555555555555555555555544444
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.48 E-value=9.3e-13 Score=136.75 Aligned_cols=125 Identities=14% Similarity=0.125 Sum_probs=119.6
Q ss_pred cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~ 254 (331)
...++|.+|...+++++|+.+|+++++.+|+++.+++.+|.+++. .|++++|+.+|+++++++|++..++..++.+++.
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI-KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999999776 9999999999999999999999999999999998
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 255 AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 255 ~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
+|++++|+.+|+++++..|++..++..++.++...|++++|.+.++
T Consensus 446 -~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~ 491 (615)
T TIGR00990 446 -EGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFD 491 (615)
T ss_pred -CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998887
No 8
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.47 E-value=2.9e-13 Score=139.19 Aligned_cols=130 Identities=19% Similarity=0.175 Sum_probs=117.8
Q ss_pred CCcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020094 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 171 g~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ 250 (331)
.|+.-..|+|..|...+.++.|..+|.++++.+|+.+.+..|||.++.. +|++++|+.+|..||.++|+.++++.+++.
T Consensus 352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kq-qgnl~~Ai~~YkealrI~P~fAda~~NmGn 430 (966)
T KOG4626|consen 352 NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQ-QGNLDDAIMCYKEALRIKPTFADALSNMGN 430 (966)
T ss_pred ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHh-cccHHHHHHHHHHHHhcCchHHHHHHhcch
Confidence 5666678888888888889999999999999999999999999988665 999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhh
Q 020094 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEE 302 (331)
Q Consensus 251 ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~ 302 (331)
.+-+ +|+.+.|+.+|.+||.++|.-++++.+||.+|.+.|+..+|+..+++
T Consensus 431 t~ke-~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~ 481 (966)
T KOG4626|consen 431 TYKE-MGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRT 481 (966)
T ss_pred HHHH-hhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHH
Confidence 9988 99999999999999999999999999999999999999999988873
No 9
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.46 E-value=1.6e-12 Score=124.01 Aligned_cols=126 Identities=10% Similarity=0.076 Sum_probs=110.7
Q ss_pred cccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll 252 (331)
.....+.|..|...|++++|+..|+++++.+|+++.++.++|.++.. .|++++|++.|++|++++|++..++.+++.++
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l 142 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQ-AGNFDAAYEAFDSVLELDPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34567888999999999999999999999999999999999998665 99999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 253 ~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
+. .|++++|+..|+++++++|+++.... +..++...++.++|...++
T Consensus 143 ~~-~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~ 189 (296)
T PRK11189 143 YY-GGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLK 189 (296)
T ss_pred HH-CCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHH
Confidence 98 99999999999999999999985322 2223445677888888875
No 10
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.45 E-value=4e-12 Score=110.14 Aligned_cols=127 Identities=21% Similarity=0.291 Sum_probs=104.9
Q ss_pred cccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll 252 (331)
.....++|..|...+++++|+.+|++++..+|++..++..+|.++.. .|++++|+++|+++++.+|+++.++.+++.++
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQ-LGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 34577889999999999999999999999999999999999988665 89999999999999999999988888888777
Q ss_pred HHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 253 WQAHKDASRAESYFDQAVKSA--PDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 253 ~~~~Gd~deA~~yfekAL~ld--P~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
.. .|++++|+.+|++++... +.....+..++.++...|+.+++...++
T Consensus 110 ~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (234)
T TIGR02521 110 CQ-QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLT 159 (234)
T ss_pred HH-cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77 888888888888887753 3455677777777777777777776665
No 11
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.43 E-value=1.2e-12 Score=121.64 Aligned_cols=130 Identities=22% Similarity=0.265 Sum_probs=117.0
Q ss_pred ccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHH
Q 020094 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS---DGNILSLYAD 250 (331)
Q Consensus 174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~---d~~al~~yA~ 250 (331)
+-..-+|.+|.+.|+.+.|.+.|++|+.++|++.++++|||.+||. +|++++|.++|++|+. +|. .+.+|-++++
T Consensus 70 ~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~-qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~ 147 (250)
T COG3063 70 LAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA-QGRPEEAMQQFERALA-DPAYGEPSDTLENLGL 147 (250)
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh-CCChHHHHHHHHHHHh-CCCCCCcchhhhhhHH
Confidence 3355678999999999999999999999999999999999999998 9999999999999998 554 6688888988
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhhhhcc
Q 020094 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEESQHQ 306 (331)
Q Consensus 251 ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~~~~ 306 (331)
+.++ +|+++.|..+|+|+++++|+.+.....++...++.+++-+|.--++-.++.
T Consensus 148 Cal~-~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~ 202 (250)
T COG3063 148 CALK-AGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQR 202 (250)
T ss_pred HHhh-cCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhc
Confidence 8888 999999999999999999999999999999999999999998666533333
No 12
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.43 E-value=2.5e-12 Score=106.67 Aligned_cols=106 Identities=17% Similarity=0.110 Sum_probs=73.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 020094 194 AYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSA 273 (331)
Q Consensus 194 e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ld 273 (331)
+.|++++..+|++..+...+|.++.. .+++++|++++++++.++|+++.++..++.+++. .+++++|+.+|+++++.+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQ-QGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM-LKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHH-cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcC
Confidence 35666777777777666666666554 6677777777777777777777777666666666 677777777777777777
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 274 PDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 274 P~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
|++..+++.+|.+++..|++++|.+.++
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~ 109 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALD 109 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777777777777777777766655
No 13
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.42 E-value=8.9e-12 Score=107.92 Aligned_cols=126 Identities=20% Similarity=0.243 Sum_probs=115.2
Q ss_pred ccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Q 020094 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN--PSDGNILSLYADL 251 (331)
Q Consensus 174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeld--P~d~~al~~yA~l 251 (331)
....+++.+|...+++++|+.+|+++++.+|.++.++.++|.++.. .|++++|+++|++++... |....++..++.+
T Consensus 66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (234)
T TIGR02521 66 LAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ-QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLC 144 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cccHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 3556789999999999999999999999999999999999999766 999999999999999864 5567788888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 252 l~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
++. .|++++|+.+|+++++.+|++..++..++.++...|++++|...++
T Consensus 145 ~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 193 (234)
T TIGR02521 145 ALK-AGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLE 193 (234)
T ss_pred HHH-cCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888 9999999999999999999999999999999999999999988777
No 14
>PRK12370 invasion protein regulator; Provisional
Probab=99.42 E-value=4.3e-12 Score=130.87 Aligned_cols=128 Identities=13% Similarity=0.042 Sum_probs=97.5
Q ss_pred CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l 251 (331)
+.....++|.++...+++++|+.+|+++++++|+++.+++.+|.++.. .|++++|+.+|++|++++|.++.++..++.+
T Consensus 337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~ 415 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM-AGQLEEALQTINECLKLDPTRAAAGITKLWI 415 (553)
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 344455677777778888888888888888888888888888877655 7888888888888888888877666556666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 252 IWQAHKDASRAESYFDQAVKSA-PDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 252 l~~~~Gd~deA~~yfekAL~ld-P~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
++. .|++++|+.+++++++.. |+++..+..++.+|..+|+.++|...++
T Consensus 416 ~~~-~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~ 465 (553)
T PRK12370 416 TYY-HTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTK 465 (553)
T ss_pred HHh-ccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 666 778888888888887775 5777777888888888888888877665
No 15
>PRK12370 invasion protein regulator; Provisional
Probab=99.41 E-value=2.9e-12 Score=132.13 Aligned_cols=129 Identities=12% Similarity=0.033 Sum_probs=112.5
Q ss_pred CcccccchHHHHHhC---------CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020094 172 GSGFSGSNNNYSNNN---------HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG 242 (331)
Q Consensus 172 ~~~~~~N~A~~y~s~---------gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~ 242 (331)
+.....++|.+|... +++++|+.+++++++++|+++.++..+|.++.. .|++++|+.+|++|++++|+++
T Consensus 294 ~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~-~g~~~~A~~~~~~Al~l~P~~~ 372 (553)
T PRK12370 294 SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTI-HSEYIVGSLLFKQANLLSPISA 372 (553)
T ss_pred cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCH
Confidence 333445566655422 347999999999999999999999999988765 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhh
Q 020094 243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEE 302 (331)
Q Consensus 243 ~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~ 302 (331)
.+++.++.++.. .|++++|+.+|+++++++|.+..++..++.++...|++++|...+++
T Consensus 373 ~a~~~lg~~l~~-~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 373 DIKYYYGWNLFM-AGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 999999999998 99999999999999999999887777777778889999999988873
No 16
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.40 E-value=7.9e-12 Score=103.66 Aligned_cols=108 Identities=10% Similarity=-0.009 Sum_probs=99.2
Q ss_pred CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l 251 (331)
+.-...++|.++...+++++|+.+|++++..+|+++.++.++|.++.. .+++++|+.+|+++++.+|+++.+++.++.+
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 94 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM-LKEYEEAIDAYALAAALDPDDPRPYFHAAEC 94 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 334467889999999999999999999999999999999999999766 8999999999999999999999999999998
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020094 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLA 281 (331)
Q Consensus 252 l~~~~Gd~deA~~yfekAL~ldP~d~~vl~ 281 (331)
++. .|++++|+.+|+++++++|++.....
T Consensus 95 ~~~-~g~~~~A~~~~~~al~~~p~~~~~~~ 123 (135)
T TIGR02552 95 LLA-LGEPESALKALDLAIEICGENPEYSE 123 (135)
T ss_pred HHH-cCCHHHHHHHHHHHHHhccccchHHH
Confidence 888 99999999999999999998876443
No 17
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.40 E-value=6e-12 Score=123.63 Aligned_cols=113 Identities=16% Similarity=0.151 Sum_probs=105.2
Q ss_pred chHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020094 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (331)
Q Consensus 178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~G 257 (331)
.-|..++..++|++|+.+|+++|+++|+++.+++++|.++.. .|++++|+.++++|++++|+++.+++.++.+++. .|
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~-~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~-lg 84 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIK-LGNFTEAVADANKAIELDPSLAKAYLRKGTACMK-LE 84 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-hC
Confidence 346778888999999999999999999999999999999766 9999999999999999999999999999999998 99
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020094 258 DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGD 292 (331)
Q Consensus 258 d~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~ 292 (331)
++++|+.+|+++++++|++..+...++.+..++.+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999888777744
No 18
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.38 E-value=1.4e-12 Score=121.95 Aligned_cols=128 Identities=24% Similarity=0.278 Sum_probs=101.0
Q ss_pred CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l 251 (331)
...+..-+|.++...|+.++|+.+|+++++.+|+++.++..|+.++.. .|+++++.+.+.+..+..|.|+.+|..++.+
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~-~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~ 223 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLID-MGDYDEAREALKRLLKAAPDDPDLWDALAAA 223 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHH-HTSCCHCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 456677899999999999999999999999999999999999988765 8899999999999999889999999899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 252 l~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
++. .|++++|+.+|+++++.+|+|+.++..+|.++...|+.++|....+
T Consensus 224 ~~~-lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 224 YLQ-LGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHH-HT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------------
T ss_pred hcc-cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 888 9999999999999999999999999999999999999999987766
No 19
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.37 E-value=1.1e-11 Score=127.55 Aligned_cols=125 Identities=22% Similarity=0.255 Sum_probs=82.2
Q ss_pred ccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~ 253 (331)
....++|.+|...|++++|+.+|+++++.+|+++.++.+++.++.. .++ .+|+.++++++++.|+++.++..++.+++
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLE-LKD-PRALEYAEKALKLAPNIPAILDTLGWLLV 848 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 3455566666666666666666666666666666666666666444 555 55666666666666666666666666666
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 254 ~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
. .|++++|+.+|+++++++|.+..++.+++.++++.|+.++|...++
T Consensus 849 ~-~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 895 (899)
T TIGR02917 849 E-KGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELD 895 (899)
T ss_pred H-cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5 6777777777777777777666777777777777777766666554
No 20
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.37 E-value=1.1e-11 Score=112.54 Aligned_cols=105 Identities=15% Similarity=0.140 Sum_probs=96.0
Q ss_pred CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020094 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGD--FAKAEELCGRAILANPSDGNILSLYA 249 (331)
Q Consensus 172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd--~ekAee~~erALeldP~d~~al~~yA 249 (331)
+.-...++|.+|...+++++|+.+|+++++++|+++.++.+||.+++...|+ +++|.+.++++++++|+++.++.++|
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA 151 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLA 151 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 3445678899999999999999999999999999999999999987554677 59999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020094 250 DLIWQAHKDASRAESYFDQAVKSAPDDC 277 (331)
Q Consensus 250 ~ll~~~~Gd~deA~~yfekAL~ldP~d~ 277 (331)
..+++ .|++++|+.+|+++++++|.+.
T Consensus 152 ~~~~~-~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 152 SDAFM-QADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHH-cCCHHHHHHHHHHHHhhCCCCc
Confidence 99998 9999999999999999999554
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.36 E-value=1.5e-11 Score=134.85 Aligned_cols=121 Identities=14% Similarity=0.124 Sum_probs=111.2
Q ss_pred chHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020094 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (331)
Q Consensus 178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~G 257 (331)
+++..+...|++++|+.+|+++++++|+ +.++.++|.++.. .|++++|+.+|+++++++|+++.++.+++.++.. .|
T Consensus 581 ~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~-lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~-~G 657 (987)
T PRK09782 581 WLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQ-RHNVPAAVSDLRAALELEPNNSNYQAALGYALWD-SG 657 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CC
Confidence 3444455569999999999999999996 9999999988766 9999999999999999999999999999999998 99
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 258 DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 258 d~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
++++|+.+|++|++++|+++.+++++|.++...|+.++|...++
T Consensus 658 ~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 658 DIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999998887
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.35 E-value=1.1e-11 Score=130.60 Aligned_cols=127 Identities=20% Similarity=0.148 Sum_probs=94.0
Q ss_pred cccccchHHHHHhCCCcHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020094 173 SGFSGSNNNYSNNNHGSSS----TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY 248 (331)
Q Consensus 173 ~~~~~N~A~~y~s~gd~ek----A~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~y 248 (331)
.....++|..|...|++++ |+.+|+++++++|+++.++.+||.++.. .|++++|+.+|+++++++|+++.++..+
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~eA~~~l~~al~l~P~~~~a~~~L 324 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR-TGQNEKAIPLLQQSLATHPDLPYVRAMY 324 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3445667777777777764 6777777777777777777777777655 7777777777777777777777777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 249 ADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 249 A~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
+.++.. .|++++|+..|+++++.+|++..++..++.++...|+.++|.+.++
T Consensus 325 a~~l~~-~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~ 376 (656)
T PRK15174 325 ARALRQ-VGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFE 376 (656)
T ss_pred HHHHHH-CCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777766 7777777777777777777776666666777777777777777666
No 23
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.35 E-value=1.6e-11 Score=130.36 Aligned_cols=128 Identities=13% Similarity=0.022 Sum_probs=122.4
Q ss_pred CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l 251 (331)
......|+|+.....|.+++|+..++++++..|++..++.++|.+|.. ++++++|...+++++..+|+++.++..+|.+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~-~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~ 163 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKR-QQGIEAGRAEIELYFSGGSSSAREILLEAKS 163 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-hccHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 355678999999999999999999999999999999999999999887 9999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 252 l~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
+.+ .|++++|+.+|+++++.+|++..++.++|.++...|+.++|...++
T Consensus 164 l~~-~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~ 212 (694)
T PRK15179 164 WDE-IGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQ 212 (694)
T ss_pred HHH-hcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 998 9999999999999999999999999999999999999999988776
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.35 E-value=1.9e-11 Score=128.78 Aligned_cols=123 Identities=20% Similarity=0.186 Sum_probs=116.3
Q ss_pred cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAK----AEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ek----Aee~~erALeldP~d~~al~~yA~ll 252 (331)
.+++..|...+++++|+..|+++++.+|+++.++.++|.++.. .|++++ |+.+|+++++++|+++.++.+++.++
T Consensus 216 ~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~-~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l 294 (656)
T PRK15174 216 GLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQ-SGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADAL 294 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 3457788899999999999999999999999999999999776 999885 89999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 253 ~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
.. .|++++|+.+|+++++++|++..++..++.++.+.|++++|...++
T Consensus 295 ~~-~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~ 342 (656)
T PRK15174 295 IR-TGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFV 342 (656)
T ss_pred HH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 98 9999999999999999999999999999999999999999998887
No 25
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=7.3e-12 Score=119.87 Aligned_cols=108 Identities=17% Similarity=0.182 Sum_probs=102.4
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 020094 185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAES 264 (331)
Q Consensus 185 s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~ 264 (331)
+.++|++|+..|.+||+++|.|+-++.+-|.++.. +|.|+.|++-|+.||.+||+...+|..++.+++- +|++++|++
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~-Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~-~gk~~~A~~ 170 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSK-LGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA-LGKYEEAIE 170 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH-hcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc-cCcHHHHHH
Confidence 45899999999999999999999999999999776 9999999999999999999999999999999998 999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCch
Q 020094 265 YFDQAVKSAPDDCYVLASYAKFLWDAGDDE 294 (331)
Q Consensus 265 yfekAL~ldP~d~~vl~~LA~~L~~lG~~e 294 (331)
.|+|||+++|++..+..+|.++-.++.+..
T Consensus 171 aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 171 AYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999988888766
No 26
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.5e-11 Score=123.44 Aligned_cols=120 Identities=18% Similarity=0.116 Sum_probs=110.8
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 020094 180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA 259 (331)
Q Consensus 180 A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~ 259 (331)
|.+|.-.+++++|+.||++|+++||....+|..+|.=+.+ ..+-..|++.|++||+++|.|..+|+-+|..+-. ++=.
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvE-mKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei-m~Mh 414 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVE-MKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI-MKMH 414 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHH-hcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH-hcch
Confidence 4577778899999999999999999999999999966555 8999999999999999999999999999998887 8888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 260 SRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 260 deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
.=|+-||++|+++-|+|..+|..+|.||.++++.+||+|+++
T Consensus 415 ~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCyk 456 (559)
T KOG1155|consen 415 FYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYK 456 (559)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 899999999999999999999999999999999999999987
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.31 E-value=2.2e-11 Score=133.63 Aligned_cols=130 Identities=12% Similarity=0.108 Sum_probs=122.3
Q ss_pred cccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll 252 (331)
.....|+|.++...|++++|+.+|+++++++|+++.++.++|.++.. .|++++|+++|++|++++|+++.++.+++.++
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~-~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al 687 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD-SGDIAQSREMLERAHKGLPDDPALIRQLAYVN 687 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999877 99999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhhhh
Q 020094 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEESQ 304 (331)
Q Consensus 253 ~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~~ 304 (331)
.. .|++++|+.+|++|++++|++..+.+.++.++....+++.+.+.++-.|
T Consensus 688 ~~-lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 688 QR-LDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred HH-CCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 98 9999999999999999999999999999999999999999988776443
No 28
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.27 E-value=4.7e-12 Score=130.78 Aligned_cols=121 Identities=16% Similarity=0.149 Sum_probs=71.9
Q ss_pred hHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 020094 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD 258 (331)
Q Consensus 179 ~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd 258 (331)
++.||.-+++++.|+.+|+||+++||.+..++..+|.=+-. ..+|++|..+|++||..+|.+..+|+-++.+++. +++
T Consensus 427 ~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~-~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K-qek 504 (638)
T KOG1126|consen 427 LGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIA-TEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK-QEK 504 (638)
T ss_pred hcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhh-hHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec-cch
Confidence 34566667777777777777777777666665555522211 4455666666666666666666666555555555 555
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 259 ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 259 ~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
++.|+-+|++|++++|.+-.+.-.++.++-++|+.++|-..++
T Consensus 505 ~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~ 547 (638)
T KOG1126|consen 505 LEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYE 547 (638)
T ss_pred hhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHH
Confidence 5555555555555555555555555555555555555554444
No 29
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.26 E-value=1.2e-10 Score=102.82 Aligned_cols=97 Identities=7% Similarity=-0.083 Sum_probs=86.7
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~ 255 (331)
.+-+|..++..|++++|+..|+-+..++|.+...|++||.++.. .|+|.+|+..|.+|+.++|+|+..+.+.+.+++.
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~-~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~- 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA-QKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA- 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH-
Confidence 45678888899999999999999999999999999999988655 9999999999999999999999999888888887
Q ss_pred cCCHHHHHHHHHHHHHhCC
Q 020094 256 HKDASRAESYFDQAVKSAP 274 (331)
Q Consensus 256 ~Gd~deA~~yfekAL~ldP 274 (331)
.|+.+.|++.|+.|+....
T Consensus 116 lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 116 CDNVCYAIKALKAVVRICG 134 (157)
T ss_pred cCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999873
No 30
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.25 E-value=1.6e-10 Score=119.06 Aligned_cols=124 Identities=19% Similarity=0.208 Sum_probs=113.9
Q ss_pred cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~ 254 (331)
...+++.+|...|++++|+..+++++..+|+++.+++.+|.++.. .|++++|+++|+++++.+|+++.++..++.++..
T Consensus 738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 816 (899)
T TIGR02917 738 NAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLA-QKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLE 816 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 456788999999999999999999999999999999999988665 8999999999999999999999999999888888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 255 AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 255 ~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
.|+ .+|+.++++++++.|+++.++..++.++...|++++|.+.++
T Consensus 817 -~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 861 (899)
T TIGR02917 817 -LKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLR 861 (899)
T ss_pred -cCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888 889999999999999999999999999999999999998887
No 31
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.25 E-value=9.2e-11 Score=85.60 Aligned_cols=97 Identities=20% Similarity=0.206 Sum_probs=85.5
Q ss_pred cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020094 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH 256 (331)
Q Consensus 177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~ 256 (331)
.++|.++...+++++|+.+|+++++..|.+..++..+|.++.. .+++++|+++|.+++...|.+..++..++.++.. .
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK-L 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH-H
Confidence 4678888889999999999999999999998888889988766 8899999999999999999998888888888887 8
Q ss_pred CCHHHHHHHHHHHHHhCCC
Q 020094 257 KDASRAESYFDQAVKSAPD 275 (331)
Q Consensus 257 Gd~deA~~yfekAL~ldP~ 275 (331)
+++++|..+++++++.+|.
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999888773
No 32
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.24 E-value=1.7e-10 Score=128.46 Aligned_cols=123 Identities=15% Similarity=0.199 Sum_probs=105.6
Q ss_pred chHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-----
Q 020094 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI----- 252 (331)
Q Consensus 178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll----- 252 (331)
+.+..+...+++++|+.+|+++++++|+++.++..+|.++.. .|++++|+++|++|++++|++..++..++.++
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~-~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMA-RKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCH
Confidence 446777888999999999999999999999999999988765 89999999999999999999888776554432
Q ss_pred -------------------------------------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchH
Q 020094 253 -------------------------------------WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEE 295 (331)
Q Consensus 253 -------------------------------------~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eE 295 (331)
.. .|++++|+.+|+++++++|+++.+++.++.+|.+.|+.++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~-~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALEN-QGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 23 6899999999999999999999999999999999999999
Q ss_pred HHHhhhh
Q 020094 296 EEQDNEE 302 (331)
Q Consensus 296 a~~~~~~ 302 (331)
|...++.
T Consensus 514 A~~~l~~ 520 (1157)
T PRK11447 514 ADALMRR 520 (1157)
T ss_pred HHHHHHH
Confidence 9888873
No 33
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.24 E-value=1.6e-10 Score=110.30 Aligned_cols=113 Identities=16% Similarity=0.097 Sum_probs=103.4
Q ss_pred CCcHHHHHHHHHHHHhCC---C-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 020094 187 HGSSSTDAYYEKMIEANP---G-NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRA 262 (331)
Q Consensus 187 gd~ekA~e~yerAL~~nP---~-n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA 262 (331)
...+.++..+.++|...| . .+.+++++|.++.. .|++++|+..|.+|++++|+++.+|..++.++.. .|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~-~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~-~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDS-LGLRALARNDFSQALALRPDMADAYNYLGIYLTQ-AGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHH
Confidence 466899999999997554 3 36779999988665 9999999999999999999999999999998888 9999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 263 ESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 263 ~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
+..|+++++++|++..++.++|.++...|++++|...++
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~ 156 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLL 156 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999999999999999999998887
No 34
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=1.2e-11 Score=127.78 Aligned_cols=117 Identities=19% Similarity=0.173 Sum_probs=109.0
Q ss_pred HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 020094 183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRA 262 (331)
Q Consensus 183 y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA 262 (331)
+....++++|+.+|++||..+|.+-.+|+.+|.++. ++++++.|+.+|++|+++||.+..++..++.++.. .|+.++|
T Consensus 465 ~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~-Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~-~k~~d~A 542 (638)
T KOG1126|consen 465 SIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL-KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ-LKRKDKA 542 (638)
T ss_pred hhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee-ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH-hhhhhHH
Confidence 344578999999999999999999999999999855 49999999999999999999999999888888887 9999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 263 ESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 263 ~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
+.+|++|+.+||.|+-..+..+.++..+++++||-.++|
T Consensus 543 L~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LE 581 (638)
T KOG1126|consen 543 LQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELE 581 (638)
T ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHH
Confidence 999999999999999999999999999999999988887
No 35
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.23 E-value=2.5e-10 Score=110.13 Aligned_cols=124 Identities=10% Similarity=0.057 Sum_probs=91.4
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHH
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN-----ILSLYAD 250 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~-----al~~yA~ 250 (331)
..+++..|...|++++|+.+|+++++.+|.+..++..++.++.. .|++++|+++++++++.+|.+.. ++..++.
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQ-EKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH-hchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 45667778888888888888888887777777777777777554 77777777777777777776532 3344555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 251 ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
+++. .+++++|+.+|+++++.+|++..++..++.++.+.|++++|.+.++
T Consensus 189 ~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 238 (389)
T PRK11788 189 QALA-RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALE 238 (389)
T ss_pred HHHh-CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5566 7777777777777777777777777777777777777777777666
No 36
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.21 E-value=2.7e-10 Score=107.24 Aligned_cols=124 Identities=18% Similarity=0.106 Sum_probs=116.5
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~ 255 (331)
+.-++......|+|..|+..++++...+|+|++++..+|.+|.. .|+++.|..-|.+|+++.|+++.++.+++..++.
T Consensus 103 l~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq-~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L- 180 (257)
T COG5010 103 LAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQ-LGRFDEARRAYRQALELAPNEPSIANNLGMSLLL- 180 (257)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHH-ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH-
Confidence 33478888999999999999999999999999999999999765 9999999999999999999999999999999998
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 256 ~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
.|+++.|++++.++...-+.+..+..+++.+....|++.+|++...
T Consensus 181 ~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 181 RGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 9999999999999999988999999999999999999999987654
No 37
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.21 E-value=2.6e-10 Score=103.49 Aligned_cols=124 Identities=13% Similarity=0.006 Sum_probs=66.1
Q ss_pred cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCCHHHH-
Q 020094 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL---LLGNYARFLKEV-------RGDFAKAEELCGRAILANPSDGNIL- 245 (331)
Q Consensus 177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~---~l~nLA~~L~~~-------~gd~ekAee~~erALeldP~d~~al- 245 (331)
.++|.+|...+++++|+..|+++++.+|+++. +++.+|.++... .+++++|++.|++++..+|++..++
T Consensus 74 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 153 (235)
T TIGR03302 74 LDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPD 153 (235)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHH
Confidence 44555555556666666666666666555544 344445443321 1445556666666666666554332
Q ss_pred ----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 246 ----------------SLYADLIWQAHKDASRAESYFDQAVKSAPDD---CYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 246 ----------------~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d---~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
..++.+++. .|++.+|+..|+++++..|++ ..+++.++.++..+|+++++.+.++
T Consensus 154 a~~~~~~~~~~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~ 227 (235)
T TIGR03302 154 AKKRMDYLRNRLAGKELYVARFYLK-RGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAA 227 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 122333443 566666666666666664432 3555666666666666666655443
No 38
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.21 E-value=3.7e-10 Score=120.87 Aligned_cols=123 Identities=14% Similarity=0.077 Sum_probs=115.5
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~ 255 (331)
..++|.++...+++++|+.+|+++++.+|+++.++..+|.++.. .+++++|+.+++++++.+|+++. +..++.++..
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~-~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~- 128 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD-AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKR- 128 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH-
Confidence 57899999999999999999999999999999999999988766 99999999999999999999999 9889888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 256 ~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
.|++++|+.+|+++++++|++..++..++.++...+..++|...++
T Consensus 129 ~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 129 AGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 9999999999999999999999999999999999999888776655
No 39
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.21 E-value=3.3e-10 Score=109.29 Aligned_cols=124 Identities=16% Similarity=0.156 Sum_probs=109.5
Q ss_pred cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHH
Q 020094 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD-GNILSLYADLIW 253 (331)
Q Consensus 175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d-~~al~~yA~ll~ 253 (331)
+..+++..+...+++++|+.+|+++++.+|++..++..+|.++.. .|++++|+++|+++++.+|.+ ..++..++.++.
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~ 260 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALA-QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQ 260 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHH
Confidence 345788888999999999999999999999999999999988766 999999999999999999976 456667777777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 254 ~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
. .|++++|+.+++++++..|++. ++..++.++.+.|+.++|...++
T Consensus 261 ~-~g~~~~A~~~l~~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~ 306 (389)
T PRK11788 261 A-LGDEAEGLEFLRRALEEYPGAD-LLLALAQLLEEQEGPEAAQALLR 306 (389)
T ss_pred H-cCCHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHH
Confidence 7 9999999999999999999764 44889999999999999998887
No 40
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.21 E-value=4.6e-10 Score=89.72 Aligned_cols=104 Identities=11% Similarity=0.070 Sum_probs=92.2
Q ss_pred cchHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 020094 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYAD 250 (331)
Q Consensus 177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n---~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d---~~al~~yA~ 250 (331)
.+.+..+...+++++|+.+|++++..+|++ +.+++.+|.++.. .+++++|+.+|++++..+|++ +.++..++.
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA-QGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 467888999999999999999999999987 5688889999766 999999999999999999985 677888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020094 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLAS 282 (331)
Q Consensus 251 ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~ 282 (331)
++.. .+++++|+.+|+++++..|++..+...
T Consensus 85 ~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 85 SLQE-LGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHH-hCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 8887 999999999999999999988765543
No 41
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.19 E-value=4.9e-10 Score=101.62 Aligned_cols=130 Identities=16% Similarity=0.127 Sum_probs=112.9
Q ss_pred CCcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---H
Q 020094 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN---I 244 (331)
Q Consensus 171 g~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~---~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~---a 244 (331)
-...-..+.+..|...+++++|+..|++++..+|+++ .+++.+|.++.. .+++++|+..|+++++.+|+++. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK-SGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 4445678899999999999999999999999999987 577889988766 99999999999999999998886 5
Q ss_pred HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCchHHHHh
Q 020094 245 LSLYADLIWQAH--------KDASRAESYFDQAVKSAPDDCYVL-----------------ASYAKFLWDAGDDEEEEQD 299 (331)
Q Consensus 245 l~~yA~ll~~~~--------Gd~deA~~yfekAL~ldP~d~~vl-----------------~~LA~~L~~lG~~eEa~~~ 299 (331)
++.++.+++. . +++++|++.|++++..+|++..++ +.++.++++.|++.+|...
T Consensus 110 ~~~~g~~~~~-~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 188 (235)
T TIGR03302 110 YYLRGLSNYN-QIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINR 188 (235)
T ss_pred HHHHHHHHHH-hcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 7778888776 4 789999999999999999886543 4678889999999999988
Q ss_pred hhh
Q 020094 300 NEE 302 (331)
Q Consensus 300 ~~~ 302 (331)
+++
T Consensus 189 ~~~ 191 (235)
T TIGR03302 189 FET 191 (235)
T ss_pred HHH
Confidence 873
No 42
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.19 E-value=2.3e-10 Score=101.02 Aligned_cols=102 Identities=14% Similarity=0.003 Sum_probs=94.6
Q ss_pred HHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 020094 198 KMIEAN-PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (331)
Q Consensus 198 rAL~~n-P~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d 276 (331)
.+..+. ++.-+.++.||..++. .|++++|+..|+-++.+||.+...|+++|.++.. +|++++|+..|.+|+.++|+|
T Consensus 25 ~l~~~~~~~~l~~lY~~A~~ly~-~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~-~g~~~~AI~aY~~A~~L~~dd 102 (157)
T PRK15363 25 MLLDDDVTQPLNTLYRYAMQLME-VKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA-QKHWGEAIYAYGRAAQIKIDA 102 (157)
T ss_pred HHHCCChHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCC
Confidence 344566 7788889999999887 9999999999999999999999999999998888 999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 277 CYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 277 ~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
+..++++|.++...|+.++|.+.++
T Consensus 103 p~~~~~ag~c~L~lG~~~~A~~aF~ 127 (157)
T PRK15363 103 PQAPWAAAECYLACDNVCYAIKALK 127 (157)
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999987766
No 43
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.16 E-value=5.5e-10 Score=124.33 Aligned_cols=130 Identities=16% Similarity=0.160 Sum_probs=118.0
Q ss_pred ccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~ 253 (331)
....++|.+|...+++++|+.+|+++++.+|+++.++.++|.++.. .|++++|+++|+++++.+|+++.++..++.++.
T Consensus 604 ~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~-~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~ 682 (1157)
T PRK11447 604 RIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIA-QGDLAAARAQLAKLPATANDSLNTQRRVALAWA 682 (1157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999999999766 999999999999999999999999988998888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCchHHHHhhhhhhc
Q 020094 254 QAHKDASRAESYFDQAVKSAPDDC------YVLASYAKFLWDAGDDEEEEQDNEESQH 305 (331)
Q Consensus 254 ~~~Gd~deA~~yfekAL~ldP~d~------~vl~~LA~~L~~lG~~eEa~~~~~~~~~ 305 (331)
. .|++++|+.+|++++...|+++ .++..++.++...|+.++|...++....
T Consensus 683 ~-~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 683 A-LGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred h-CCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7 9999999999999999877443 5778889999999999999999884443
No 44
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.16 E-value=1.9e-10 Score=85.52 Aligned_cols=68 Identities=24% Similarity=0.259 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 020094 205 GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK-DASRAESYFDQAVKSAP 274 (331)
Q Consensus 205 ~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~G-d~deA~~yfekAL~ldP 274 (331)
+++.++..+|.+++. .+++++|+.+|.+||+++|+++.+++++|.+++. +| ++++|+.+|+++++++|
T Consensus 1 e~a~~~~~~g~~~~~-~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQ-QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHcCc
Confidence 367889999999776 9999999999999999999999999999999988 88 79999999999999998
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=5.5e-10 Score=112.28 Aligned_cols=122 Identities=13% Similarity=0.069 Sum_probs=112.6
Q ss_pred chHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020094 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (331)
Q Consensus 178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~G 257 (331)
-++.-|..+.+...|++.|++|+.++|.|-.+|+.+|+++.. .+=..=|+-||++|+++-|+|..+|..+|.++.. .+
T Consensus 369 LmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei-m~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k-l~ 446 (559)
T KOG1155|consen 369 LMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI-MKMHFYALYYFQKALELKPNDSRLWVALGECYEK-LN 446 (559)
T ss_pred HhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH-hcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH-hc
Confidence 356678889999999999999999999999999999999554 8888889999999999999999999999998876 99
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 258 DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 258 d~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
+.++|+++|++|+.....+..++..+|.++.++++.+||..-++
T Consensus 447 ~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~ye 490 (559)
T KOG1155|consen 447 RLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYE 490 (559)
T ss_pred cHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999889999999999999999999976554
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.14 E-value=2.3e-10 Score=107.09 Aligned_cols=130 Identities=22% Similarity=0.194 Sum_probs=103.9
Q ss_pred CCcccccchHHHHHhCCCcHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020094 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEAN--PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY 248 (331)
Q Consensus 171 g~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~n--P~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~y 248 (331)
++..+...+..+|...++++++...++++.... +.++.++..+|.++.. .|+.++|+++|++|++++|+|+.++..+
T Consensus 108 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~-~G~~~~A~~~~~~al~~~P~~~~~~~~l 186 (280)
T PF13429_consen 108 GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ-LGDPDKALRDYRKALELDPDDPDARNAL 186 (280)
T ss_dssp ----------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH-CCHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 345566678889999999999999999988765 6889999999999665 9999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhh
Q 020094 249 ADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEE 302 (331)
Q Consensus 249 A~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~ 302 (331)
++++.. .|+++++...+++..+..|.++.++..+|.++..+|+.++|-..++.
T Consensus 187 ~~~li~-~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 187 AWLLID-MGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHH-CCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccc
Confidence 999988 99999999999999999999999999999999999999999988873
No 47
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.08 E-value=3.1e-09 Score=93.24 Aligned_cols=103 Identities=18% Similarity=0.249 Sum_probs=87.8
Q ss_pred cccccchHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020094 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYA 249 (331)
Q Consensus 173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n---~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA 249 (331)
.....++|..|...+++++|+.+|++++.++|+. +.++.++|.++.. .|++++|+.+|++++..+|++..++..++
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS-NGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 3346788899999999999999999999887764 4688889988766 99999999999999999999999998888
Q ss_pred HHHHHHcCC--------------HHHHHHHHHHHHHhCCCCH
Q 020094 250 DLIWQAHKD--------------ASRAESYFDQAVKSAPDDC 277 (331)
Q Consensus 250 ~ll~~~~Gd--------------~deA~~yfekAL~ldP~d~ 277 (331)
.++.. .++ +++|+.++++++..+|++.
T Consensus 114 ~~~~~-~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 114 VIYHK-RGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHH-cCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 88877 776 6788888888888898773
No 48
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.07 E-value=4.1e-09 Score=91.90 Aligned_cols=115 Identities=18% Similarity=0.150 Sum_probs=88.3
Q ss_pred ccccchHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020094 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n---~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ 250 (331)
-...+++.++...+++++|+.+|++++.+.|+. +.++.++|.++.. .|++++|+.+|++|+.++|.+...+.+++.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~-~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS-NGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 346778889999999999999999999887763 4578888888665 899999999999999999999998888888
Q ss_pred HHH-------HHcCCHH-------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 020094 251 LIW-------QAHKDAS-------RAESYFDQAVKSAPDDCYVLASYAKFLWDAGDD 293 (331)
Q Consensus 251 ll~-------~~~Gd~d-------eA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~ 293 (331)
+++ . .|+++ +|+.+|++++..+|.+. ......+...|++
T Consensus 115 i~~~~~~~~~~-~g~~~~A~~~~~~a~~~~~~a~~~~p~~~---~~~~~~~~~~~~~ 167 (168)
T CHL00033 115 ICHYRGEQAIE-QGDSEIAEAWFDQAAEYWKQAIALAPGNY---IEAQNWLKITGRF 167 (168)
T ss_pred HHHHhhHHHHH-cccHHHHHHHHHHHHHHHHHHHHhCcccH---HHHHHHHHHhcCC
Confidence 887 5 66765 66666677788888554 3333444444444
No 49
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.05 E-value=2.7e-09 Score=100.62 Aligned_cols=128 Identities=20% Similarity=0.138 Sum_probs=118.9
Q ss_pred CCcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020094 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 171 g~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ 250 (331)
+.... +|++..|...|+-+.+..+..+.+..+|.+..++..++..+.. .|||..|+..+++|+.++|+|..+|..++.
T Consensus 65 ~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~-~g~~~~A~~~~rkA~~l~p~d~~~~~~lga 142 (257)
T COG5010 65 EDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIR-NGNFGEAVSVLRKAARLAPTDWEAWNLLGA 142 (257)
T ss_pred chHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHH-hcchHHHHHHHHHHhccCCCChhhhhHHHH
Confidence 34445 8899999999999999999999999999999999889988776 999999999999999999999999988877
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 251 ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
+|.+ .|++++|..-|.+|+++.|+++.++-|++..|.-.|+.+.|.+.+.
T Consensus 143 aldq-~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll 192 (257)
T COG5010 143 ALDQ-LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLL 192 (257)
T ss_pred HHHH-ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHH
Confidence 7777 9999999999999999999999999999999999999999998876
No 50
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.04 E-value=2.9e-09 Score=114.04 Aligned_cols=127 Identities=12% Similarity=0.023 Sum_probs=113.0
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCCC-------------C--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPG-------------N--ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS 240 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~-------------n--~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~ 240 (331)
..+++..+...+++++|+.++++++..+|. + ..++..+|.++.. .|++++|++.+++++...|+
T Consensus 313 ~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~-~g~~~eA~~~l~~al~~~P~ 391 (765)
T PRK10049 313 LADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY-SNDLPQAEMRARELAYNAPG 391 (765)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC
Confidence 455666778899999999999999999873 2 3466778888665 99999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhhhh
Q 020094 241 DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEESQ 304 (331)
Q Consensus 241 d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~~ 304 (331)
++.++..++.++.. .|++++|++.++++++++|++..+++.++.++...+++++|++.++...
T Consensus 392 n~~l~~~lA~l~~~-~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll 454 (765)
T PRK10049 392 NQGLRIDYASVLQA-RGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVV 454 (765)
T ss_pred CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999998888 9999999999999999999999999999999999999999998776443
No 51
>PLN02789 farnesyltranstransferase
Probab=99.04 E-value=5.6e-09 Score=101.75 Aligned_cols=118 Identities=14% Similarity=0.076 Sum_probs=98.9
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH-
Q 020094 182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG-DFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA- 259 (331)
Q Consensus 182 ~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~g-d~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~- 259 (331)
++...+.+++|+..+.++|++||++..+|...+.++.. .+ ++++|+.++.++++.+|++..+|...+.++.. .++.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~-L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~-l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEA-LDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEK-LGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHH-cchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHH-cCchh
Confidence 45556778999999999999999999999888888766 55 68899999999999999999999888777766 6653
Q ss_pred -HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 260 -SRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 260 -deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
++++.+++++++.+|+|..+|...+.++...+++++|.+.+.
T Consensus 124 ~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 124 ANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 678888889999999999999999999999998888877665
No 52
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.03 E-value=5.7e-09 Score=105.40 Aligned_cols=124 Identities=15% Similarity=0.087 Sum_probs=115.2
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~ 255 (331)
.+..|..++..+++++|+..++..++..|+|+.++...+.++.+ .+++++|++.+++++.++|+.+.++.+|+..++.
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~-~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~- 386 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLE-ANKAKEAIERLKKALALDPNSPLLQLNLAQALLK- 386 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh-
Confidence 35567788899999999999999999999999999999999766 9999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 256 ~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
.|++.+|+.++++.+..+|+|+..|..|+.+|..+|+..++.....
T Consensus 387 ~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A 432 (484)
T COG4783 387 GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA 432 (484)
T ss_pred cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH
Confidence 9999999999999999999999999999999999999888865443
No 53
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=1e-09 Score=112.38 Aligned_cols=116 Identities=11% Similarity=0.025 Sum_probs=58.5
Q ss_pred cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020094 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH 256 (331)
Q Consensus 177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~ 256 (331)
..++.+|...++|++|+.||+.||..+|+|..+|+.||..|.- -.+..+|+..|+||+++.|++..+++++|..++. .
T Consensus 434 ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN-~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mN-l 511 (579)
T KOG1125|consen 434 SGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN-GNRSEEAISAYNRALQLQPGYVRVRYNLGISCMN-L 511 (579)
T ss_pred hhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC-CcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhh-h
Confidence 3344455555555555555555555555555555555544432 3445555555555555555555555555555554 5
Q ss_pred CCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCCch
Q 020094 257 KDASRAESYFDQAVKSAPD----------DCYVLASYAKFLWDAGDDE 294 (331)
Q Consensus 257 Gd~deA~~yfekAL~ldP~----------d~~vl~~LA~~L~~lG~~e 294 (331)
|.|.||.++|-.||.+.+. +..+|..|-.++...++.+
T Consensus 512 G~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 512 GAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred hhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 5555555555555554332 1134555555555555444
No 54
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.00 E-value=5.6e-09 Score=76.01 Aligned_cols=91 Identities=19% Similarity=0.254 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094 209 LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLW 288 (331)
Q Consensus 209 ~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~ 288 (331)
+++++|.++.. .+++++|+.+++++++..|++..++..++.+++. .+++++|+.+|+++++..|.+..++..++.++.
T Consensus 2 ~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYK-LGDYDEALEYYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHH-HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 46678888666 8999999999999999999999999899998888 999999999999999999999999999999999
Q ss_pred HcCCchHHHHhhh
Q 020094 289 DAGDDEEEEQDNE 301 (331)
Q Consensus 289 ~lG~~eEa~~~~~ 301 (331)
..++.+++.+.++
T Consensus 80 ~~~~~~~a~~~~~ 92 (100)
T cd00189 80 KLGKYEEALEAYE 92 (100)
T ss_pred HHHhHHHHHHHHH
Confidence 9999999988776
No 55
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=2.2e-09 Score=108.65 Aligned_cols=133 Identities=21% Similarity=0.172 Sum_probs=86.8
Q ss_pred CCcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH------------------------------
Q 020094 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEV------------------------------ 220 (331)
Q Consensus 171 g~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~------------------------------ 220 (331)
-++...+.=|+.++-.++|+.|+.-|++++.++|++...+.+++.++|+.
T Consensus 392 ~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAei 471 (606)
T KOG0547|consen 392 ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEI 471 (606)
T ss_pred CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 55666666677777777777777777777777777777776666665541
Q ss_pred ---cCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020094 221 ---RGDFAKAEELCGRAILANPS------DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG 291 (331)
Q Consensus 221 ---~gd~ekAee~~erALeldP~------d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG 291 (331)
++++++|+++|.+||++.|. ++..+..-|.++.+..+++.+|+.++++|+++||....++..+|.+..+.|
T Consensus 472 LtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~ 551 (606)
T KOG0547|consen 472 LTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRG 551 (606)
T ss_pred HhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHh
Confidence 34555666666666666665 554444555555444566666666666666666666667777777777777
Q ss_pred CchHHHHhhhhh
Q 020094 292 DDEEEEQDNEES 303 (331)
Q Consensus 292 ~~eEa~~~~~~~ 303 (331)
+-+||...+|.+
T Consensus 552 ~i~eAielFEks 563 (606)
T KOG0547|consen 552 KIDEAIELFEKS 563 (606)
T ss_pred hHHHHHHHHHHH
Confidence 777776666543
No 56
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.6e-09 Score=110.23 Aligned_cols=108 Identities=16% Similarity=0.191 Sum_probs=101.4
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 020094 180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA 259 (331)
Q Consensus 180 A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~ 259 (331)
+..++..++|..|+.+|.+||..+|+++.++.|.|.++. .++.+..|+..++.+|+++|++...|..-+.++.. +.+|
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~-kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~-mk~y 442 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYL-KLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRA-MKEY 442 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH-HHHH
Confidence 556778899999999999999999999999999998854 49999999999999999999999999999888888 9999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094 260 SRAESYFDQAVKSAPDDCYVLASYAKFLWD 289 (331)
Q Consensus 260 deA~~yfekAL~ldP~d~~vl~~LA~~L~~ 289 (331)
++|...|+++++.||++.++...+..++..
T Consensus 443 dkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 443 DKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 999999999999999999999999999885
No 57
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.99 E-value=1.6e-09 Score=79.81 Aligned_cols=63 Identities=24% Similarity=0.447 Sum_probs=39.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020094 213 YARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC 277 (331)
Q Consensus 213 LA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~ 277 (331)
+|..++. .|++++|+.+|+++++.+|+++.+|+.++.+++. +|++++|+.+|+++++++|+++
T Consensus 3 ~a~~~~~-~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQ-QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ-QGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHH-CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHH-cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCC
Confidence 4445444 6666666666666666666666666666666665 6666666666666666666553
No 58
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.99 E-value=1e-08 Score=109.33 Aligned_cols=123 Identities=18% Similarity=0.202 Sum_probs=114.4
Q ss_pred cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020094 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH 256 (331)
Q Consensus 177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~ 256 (331)
...|..++..|+++.|+..+.++|+++|.++.++..||.++. .+||.++|...+-.|..++|+|...|..++....+ +
T Consensus 143 l~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyE-qrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~-~ 220 (895)
T KOG2076|consen 143 LGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYE-QRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ-L 220 (895)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH-HcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh-c
Confidence 457888889999999999999999999999999999999954 49999999999999999999999999999998888 9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 257 KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 257 Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
|++++|.-||.|||+.+|.+-...+..+.+|.++|+...|-.-++
T Consensus 221 ~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~ 265 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFL 265 (895)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 999999999999999999999999999999999999888865444
No 59
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=4e-09 Score=106.73 Aligned_cols=121 Identities=13% Similarity=0.132 Sum_probs=114.8
Q ss_pred hHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 020094 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD 258 (331)
Q Consensus 179 ~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd 258 (331)
+|..|-...+.++-...|.+|..+||.|+++++.-|++.+. .++|++|+.-|++|+.++|++...+..++-++|+ +++
T Consensus 366 ~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~fl-L~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr-~~k 443 (606)
T KOG0547|consen 366 RAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFL-LQQYEEAIADFQKAISLDPENAYAYIQLCCALYR-QHK 443 (606)
T ss_pred HHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHH-HHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHH-HHH
Confidence 56677788889999999999999999999999999999776 9999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 259 ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 259 ~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
++++...|+.+++..|+.++++...|.+|.+.+++..|.+.+.
T Consensus 444 ~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 444 IAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 9999999999999999999999999999999999999998775
No 60
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.95 E-value=2.1e-09 Score=79.29 Aligned_cols=64 Identities=17% Similarity=0.224 Sum_probs=59.2
Q ss_pred chHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020094 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG 242 (331)
Q Consensus 178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~ 242 (331)
++|..+...|++++|+.+|+++++.+|+++.+++.+|.++.. +|++++|+.+|+++++++|++|
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ-QGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCC
Confidence 478899999999999999999999999999999999999876 9999999999999999999986
No 61
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=2.5e-09 Score=109.59 Aligned_cols=109 Identities=13% Similarity=0.137 Sum_probs=102.0
Q ss_pred CcHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 020094 188 GSSSTDAYYEKMIEANP--GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESY 265 (331)
Q Consensus 188 d~ekA~e~yerAL~~nP--~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~y 265 (331)
.+..-.++|-.|...+| .++++...||.+++. .++|++|+.+|+.||..+|+|...|+.|+..+.. -.+.++|+..
T Consensus 409 ~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l-s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN-~~~s~EAIsA 486 (579)
T KOG1125|consen 409 HLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL-SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN-GNRSEEAISA 486 (579)
T ss_pred HHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc-chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC-CcccHHHHHH
Confidence 34667788999999999 799999999988776 9999999999999999999999999999999988 8899999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHH
Q 020094 266 FDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQ 298 (331)
Q Consensus 266 fekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~ 298 (331)
|.||+++.|.-..+++++|+.++++|.++||.+
T Consensus 487 Y~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 487 YNRALQLQPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred HHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 999999999999999999999999999999976
No 62
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.92 E-value=1.2e-08 Score=100.29 Aligned_cols=89 Identities=16% Similarity=0.096 Sum_probs=81.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020094 211 GNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290 (331)
Q Consensus 211 ~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~l 290 (331)
...|..++. .++|.+|+++|++||+++|+++.++.+++.++.. .|++++|+.++++|++++|++..+++.+|.+|..+
T Consensus 6 ~~~a~~a~~-~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~-~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 6 EDKAKEAFV-DDDFALAVDLYTQAIDLDPNNAELYADRAQANIK-LGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 344555555 8999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred CCchHHHHhhh
Q 020094 291 GDDEEEEQDNE 301 (331)
Q Consensus 291 G~~eEa~~~~~ 301 (331)
|++++|...++
T Consensus 84 g~~~eA~~~~~ 94 (356)
T PLN03088 84 EEYQTAKAALE 94 (356)
T ss_pred CCHHHHHHHHH
Confidence 99999987665
No 63
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.92 E-value=2.1e-08 Score=99.66 Aligned_cols=129 Identities=16% Similarity=0.057 Sum_probs=109.0
Q ss_pred CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHH
Q 020094 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLL-GNYARFLKEVRGDFAKAEELCGRAILANPSDG--NILSLY 248 (331)
Q Consensus 172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l-~nLA~~L~~~~gd~ekAee~~erALeldP~d~--~al~~y 248 (331)
+..+...+|..+...|++++|++.++++++.+|++.... ..+..+.....++..++++.++++++.+|+|+ .++..|
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sL 341 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRAL 341 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 556788899999999999999999999999999998632 11112222225788999999999999999999 899999
Q ss_pred HHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhh
Q 020094 249 ADLIWQAHKDASRAESYFD--QAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEE 302 (331)
Q Consensus 249 A~ll~~~~Gd~deA~~yfe--kAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~ 302 (331)
|++++. .|++++|.++|+ ++++..|++.. +..++.++++.|+.++|...+++
T Consensus 342 g~l~~~-~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 342 GQLLMK-HGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHH-cccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHH
Confidence 999998 999999999999 68888885554 66999999999999999887773
No 64
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.91 E-value=3.2e-09 Score=82.53 Aligned_cols=81 Identities=26% Similarity=0.374 Sum_probs=59.1
Q ss_pred CCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 020094 186 NHGSSSTDAYYEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAE 263 (331)
Q Consensus 186 ~gd~ekA~e~yerAL~~nP~--n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~ 263 (331)
.++++.|+.+|+++++.+|. +..+++.+|.+++. .|+|++|++++++ ++.+|.++.+...+|.+++. +|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~-l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK-LGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH-hCCHHHHH
Confidence 36777888888888888774 45566667777666 7888888888877 77777777777777777777 88888888
Q ss_pred HHHHHH
Q 020094 264 SYFDQA 269 (331)
Q Consensus 264 ~yfekA 269 (331)
++|++|
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 877765
No 65
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.90 E-value=3.9e-09 Score=78.43 Aligned_cols=64 Identities=23% Similarity=0.210 Sum_probs=59.9
Q ss_pred cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 020094 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG-DFAKAEELCGRAILANP 239 (331)
Q Consensus 175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~g-d~ekAee~~erALeldP 239 (331)
...++|.++...+++++|+.+|+++|+.+|+++.+++++|.++.. .+ ++++|+++|++|++++|
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHcCc
Confidence 345789999999999999999999999999999999999999766 88 79999999999999998
No 66
>PLN02789 farnesyltranstransferase
Probab=98.90 E-value=4.4e-08 Score=95.50 Aligned_cols=110 Identities=10% Similarity=0.016 Sum_probs=98.6
Q ss_pred hHHHHHhCC-CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094 179 NNNYSNNNH-GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGD--FAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 179 ~A~~y~s~g-d~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd--~ekAee~~erALeldP~d~~al~~yA~ll~~~ 255 (331)
-+.++...+ ++++++.++.++++.+|++..+|...+.++.. .++ +++++.++.++|++||+|..+|...++++..
T Consensus 77 R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~-l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~- 154 (320)
T PLN02789 77 RRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEK-LGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRT- 154 (320)
T ss_pred HHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHH-cCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-
Confidence 345666776 57999999999999999999999999888655 665 3788999999999999999999999998888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020094 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290 (331)
Q Consensus 256 ~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~l 290 (331)
.+++++|++++.++|+.+|.|..+|...+.++.+.
T Consensus 155 l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 155 LGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred hhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 99999999999999999999999999999998876
No 67
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.89 E-value=4e-08 Score=78.41 Aligned_cols=95 Identities=18% Similarity=0.168 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 020094 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD---CYVL 280 (331)
Q Consensus 207 ~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d---~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d---~~vl 280 (331)
+++++..|..+.. .+++++|+++|.+++..+|++ +.+++.++.+++. .+++++|+.+|++++..+|++ ..++
T Consensus 2 ~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 2 EEAYYDAALLVLK-AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA-QGKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred cHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 4567888888666 999999999999999999987 5688889999888 999999999999999999875 6789
Q ss_pred HHHHHHHHHcCCchHHHHhhhhh
Q 020094 281 ASYAKFLWDAGDDEEEEQDNEES 303 (331)
Q Consensus 281 ~~LA~~L~~lG~~eEa~~~~~~~ 303 (331)
+.++.++.+.++.+++.+.+++.
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHH
Confidence 99999999999999999888733
No 68
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.88 E-value=3.2e-08 Score=107.20 Aligned_cols=127 Identities=11% Similarity=0.043 Sum_probs=106.4
Q ss_pred cccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll 252 (331)
..-.+..+....+.|+++.|+..|+++++.+|+++.....++.++.. .|++++|+.++++++.-+|.....+..+|.++
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~-~G~~~~A~~~~eka~~p~n~~~~~llalA~ly 112 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGW-AGRDQEVIDVYERYQSSMNISSRGLASAARAY 112 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHH-cCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 33456778889999999999999999999999996554477777555 79999999999999943344444443446677
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 253 ~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
.. +|++++|+++|+++++.+|+++.++..++.++.+.++.++|.+.++
T Consensus 113 ~~-~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~ 160 (822)
T PRK14574 113 RN-EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQAT 160 (822)
T ss_pred HH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 77 9999999999999999999999999999999999999999988776
No 69
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.88 E-value=2.6e-08 Score=106.04 Aligned_cols=127 Identities=10% Similarity=0.036 Sum_probs=109.7
Q ss_pred cccccchHHHHHhCCCcHHHHHHHH---HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020094 173 SGFSGSNNNYSNNNHGSSSTDAYYE---KMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYA 249 (331)
Q Consensus 173 ~~~~~N~A~~y~s~gd~ekA~e~ye---rAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA 249 (331)
+.....+-.+....+...++-+.+- ...+..|++++++.+||.+... .|.+++|+++++++++++|++..++.+++
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~-~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a 127 (694)
T PRK15179 49 RELLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEA-AHRSDEGLAVWRGIHQRFPDSSEAFILML 127 (694)
T ss_pred HHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHH-cCCcHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 3344455556666665544444443 4445689999999999999766 99999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 250 DLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 250 ~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
.++.+ ++++++|+..+++++..+|++..++..+|.++.++|+++||+..++
T Consensus 128 ~~L~~-~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~ 178 (694)
T PRK15179 128 RGVKR-QQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFE 178 (694)
T ss_pred HHHHH-hccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 99999 9999999999999999999999999999999999999999999887
No 70
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.87 E-value=3.6e-08 Score=85.92 Aligned_cols=113 Identities=17% Similarity=0.129 Sum_probs=95.2
Q ss_pred CCcHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCCHHH
Q 020094 187 HGSSSTDAYYEKMIEANPGN--ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS---DGNILSLYADLIWQAHKDASR 261 (331)
Q Consensus 187 gd~ekA~e~yerAL~~nP~n--~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~---d~~al~~yA~ll~~~~Gd~de 261 (331)
..+..+...+.+.++.++.+ ..+++++|.++.. .+++++|+.+|++|+.+.|+ .+.++.+++.++.. .|++++
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~-~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~-~g~~~e 90 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQS-EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS-NGEHTK 90 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH-cCCHHH
Confidence 55788888887777777776 5566888887655 89999999999999999776 34588889888888 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHH-------HcCCchHHHHhhh
Q 020094 262 AESYFDQAVKSAPDDCYVLASYAKFLW-------DAGDDEEEEQDNE 301 (331)
Q Consensus 262 A~~yfekAL~ldP~d~~vl~~LA~~L~-------~lG~~eEa~~~~~ 301 (331)
|+.+|++|+.++|.....+.+++.++. ..|+++++...++
T Consensus 91 A~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 91 ALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 999999999999999999999999999 7778877765554
No 71
>PRK11906 transcriptional regulator; Provisional
Probab=98.84 E-value=4.3e-08 Score=99.18 Aligned_cols=113 Identities=15% Similarity=0.045 Sum_probs=102.7
Q ss_pred CcHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020094 188 GSSSTDAYYEKMI---EANPGNALLLGNYARFLKEV--------RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH 256 (331)
Q Consensus 188 d~ekA~e~yerAL---~~nP~n~~~l~nLA~~L~~~--------~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~ 256 (331)
..+.|+.+|.+++ .++|+.+.++..+|.+++.. ..+..+|.++.++|+++||+|+.++..+|.+++. .
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~-~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL-S 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-h
Confidence 4588999999999 99999999999998775543 2346789999999999999999999999999999 8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 257 KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 257 Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
++++.|...|++|+.++|+.+.+|+..|.++.-.|+.+++....+
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 889999999999999999999999999999999999999987776
No 72
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.84 E-value=4.1e-08 Score=93.72 Aligned_cols=124 Identities=18% Similarity=0.133 Sum_probs=99.0
Q ss_pred cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHH-------------------------------------HHHHHHHH
Q 020094 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLG-------------------------------------NYARFLKE 219 (331)
Q Consensus 177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~-------------------------------------nLA~~L~~ 219 (331)
...+..+...+++++|..+++++++.+|++..++. .+|.++.
T Consensus 47 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~- 125 (355)
T cd05804 47 HVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLE- 125 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHH-
Confidence 34566777888888899999888888888875433 2233333
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCchH
Q 020094 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC----YVLASYAKFLWDAGDDEE 295 (331)
Q Consensus 220 ~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~----~vl~~LA~~L~~lG~~eE 295 (331)
..|++++|++.++++++++|+++.++..++.++++ .|++++|+.++++++...|.+. ..+..++.++...|++++
T Consensus 126 ~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~-~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 126 EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM-QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence 37889999999999999999999888888888888 9999999999999999877432 346678999999999999
Q ss_pred HHHhhhh
Q 020094 296 EEQDNEE 302 (331)
Q Consensus 296 a~~~~~~ 302 (331)
+...+++
T Consensus 205 A~~~~~~ 211 (355)
T cd05804 205 ALAIYDT 211 (355)
T ss_pred HHHHHHH
Confidence 9988873
No 73
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.84 E-value=7e-08 Score=96.69 Aligned_cols=117 Identities=21% Similarity=0.192 Sum_probs=105.1
Q ss_pred hHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 020094 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD 258 (331)
Q Consensus 179 ~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd 258 (331)
+-.++...+.++.|+..|+++.+.+|+ +...+|.++.. .++..+|++++.++|+.+|++...+...+.++.. .++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~-~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~-k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLL-MNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS-KKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHh-cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCC
Confidence 456777778999999999999998876 55557777655 7889999999999999999999999999999998 999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhh
Q 020094 259 ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDN 300 (331)
Q Consensus 259 ~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~ 300 (331)
++.|+.+.++|+.+.|++...|+.|+.+|..+|++++|-..+
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaL 291 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLAL 291 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999999999999999999999999996544
No 74
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=7e-08 Score=92.69 Aligned_cols=114 Identities=19% Similarity=0.166 Sum_probs=93.7
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHH
Q 020094 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK--DASRAES 264 (331)
Q Consensus 187 gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~G--d~deA~~ 264 (331)
.+.++-..-.+.-|+.||+|.+-|..||.++.. .+++..|...|++|+++.|+|++++..|+.+++...| ...+|..
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~-~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMA-LGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH-hcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 346778888888888899998888888888544 8888888889999999999888888888888877443 3568888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 265 YFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 265 yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
.|++++++||.|..+++.||..++..|++.+|....+
T Consensus 215 ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq 251 (287)
T COG4235 215 LLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQ 251 (287)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 8889999999888888888888888888888875443
No 75
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.82 E-value=4.9e-08 Score=93.22 Aligned_cols=99 Identities=13% Similarity=0.062 Sum_probs=87.5
Q ss_pred ccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHH
Q 020094 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN----ILSLYA 249 (331)
Q Consensus 174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~----al~~yA 249 (331)
....+++.++...|++++|+..|+++++++|+++.++..+|.++++ .|++++|+.++++++...|.++. .+..++
T Consensus 115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~-~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la 193 (355)
T cd05804 115 YLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM-QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLA 193 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHH
Confidence 3456788899999999999999999999999999999999999877 99999999999999999885443 344677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC
Q 020094 250 DLIWQAHKDASRAESYFDQAVKSAP 274 (331)
Q Consensus 250 ~ll~~~~Gd~deA~~yfekAL~ldP 274 (331)
.++.. .|++++|+.+|++++...|
T Consensus 194 ~~~~~-~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 194 LFYLE-RGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHH-CCCHHHHHHHHHHHhcccc
Confidence 87777 9999999999999988777
No 76
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=7.4e-08 Score=92.52 Aligned_cols=107 Identities=21% Similarity=0.117 Sum_probs=95.7
Q ss_pred CCcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020094 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG--DFAKAEELCGRAILANPSDGNILSLY 248 (331)
Q Consensus 171 g~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~g--d~ekAee~~erALeldP~d~~al~~y 248 (331)
++...-.-++.+|...+++..|...|.+++++.|+|++++..||.+++...+ .-.++...+++|+.+||+|..+++.|
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 4444455689999999999999999999999999999999999999887444 35889999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020094 249 ADLIWQAHKDASRAESYFDQAVKSAPDDCY 278 (331)
Q Consensus 249 A~ll~~~~Gd~deA~~yfekAL~ldP~d~~ 278 (331)
+..+++ +|+|.+|...++..++..|.+..
T Consensus 234 A~~afe-~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 234 AFAAFE-QGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHH-cccHHHHHHHHHHHHhcCCCCCc
Confidence 999999 99999999999999999995543
No 77
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.81 E-value=8.1e-08 Score=99.26 Aligned_cols=123 Identities=9% Similarity=-0.011 Sum_probs=101.2
Q ss_pred CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCC
Q 020094 188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVR-------GDFAKAEELCGRAILA--NPSDGNILSLYADLIWQAHKD 258 (331)
Q Consensus 188 d~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~-------gd~ekAee~~erALel--dP~d~~al~~yA~ll~~~~Gd 258 (331)
++++|+.+|++|++++|+++.++..++.++.... .+..++.+..++++.+ +|.++.++..++..... .|+
T Consensus 357 ~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~-~g~ 435 (517)
T PRK10153 357 SLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALV-KGK 435 (517)
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHh-cCC
Confidence 3789999999999999999999998876543321 2356777888887774 88889998778777776 899
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhhhhcccCCCCCCCC
Q 020094 259 ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEESQHQTDHSHTSPP 315 (331)
Q Consensus 259 ~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~~~~~~~~~~~~~ 315 (331)
+++|..+|++|++++| +...|..+|.++...|+.++|...++ .+..+.+..|.
T Consensus 436 ~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~---~A~~L~P~~pt 488 (517)
T PRK10153 436 TDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYS---TAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHH---HHHhcCCCCch
Confidence 9999999999999999 68899999999999999999998887 55555555444
No 78
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.79 E-value=1.6e-07 Score=89.34 Aligned_cols=107 Identities=9% Similarity=0.121 Sum_probs=92.9
Q ss_pred CCcccccchHHHH-HhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHH
Q 020094 171 GGSGFSGSNNNYS-NNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS---DGN 243 (331)
Q Consensus 171 g~~~~~~N~A~~y-~s~gd~ekA~e~yerAL~~nP~n---~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~---d~~ 243 (331)
+...-.++.|..+ ...++|++|+..|++.+...|++ +.+++.+|.+++. .|++++|+.+|+++++..|+ .++
T Consensus 140 ~~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~-~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 140 GDANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN-KGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 3445567777776 55789999999999999999998 5799999999776 99999999999999999887 578
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 020094 244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYV 279 (331)
Q Consensus 244 al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~v 279 (331)
+++.++.++.. .|++++|+.+|+++++..|+...+
T Consensus 219 Al~klg~~~~~-~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 219 AMFKVGVIMQD-KGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCHHH
Confidence 88778887777 999999999999999999988754
No 79
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=4.5e-08 Score=97.20 Aligned_cols=116 Identities=17% Similarity=0.143 Sum_probs=100.2
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCC----C-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 020094 181 NYSNNNHGSSSTDAYYEKMIEANPG----N-----------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNIL 245 (331)
Q Consensus 181 ~~y~s~gd~ekA~e~yerAL~~nP~----n-----------~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al 245 (331)
..|++.++|..|..-|++|+..-+. + ...+.|+|.++. +.++|.+|++++.++|+++|+|+-++
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~l-Kl~~~~~Ai~~c~kvLe~~~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYL-KLKEYKEAIESCNKVLELDPNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHH-hhhhHHHHHHHHHHHHhcCCCchhHH
Confidence 4677889999999999999886431 1 123677887744 48999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHH
Q 020094 246 SLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQ 298 (331)
Q Consensus 246 ~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~ 298 (331)
+..+.++.. .++|+.|+..|++|++++|+|..+...+..+-.+..++++.++
T Consensus 295 yRrG~A~l~-~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kek 346 (397)
T KOG0543|consen 295 YRRGQALLA-LGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEK 346 (397)
T ss_pred HHHHHHHHh-hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 9999999999999999999999999999999888887776653
No 80
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.76 E-value=2e-07 Score=92.63 Aligned_cols=126 Identities=14% Similarity=0.081 Sum_probs=110.6
Q ss_pred CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l 251 (331)
++.....||..+...|+.++|...+++++. .|.++.+...|+.+ ..++++++++.+++.++..|+|+..+..+|.+
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l---~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl 337 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRL---KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQL 337 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhc---cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 445567799999999999999999999999 55577776667766 25899999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhhh
Q 020094 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEES 303 (331)
Q Consensus 252 l~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~ 303 (331)
+.. .+++++|..+|+++++..|++. .+..++.++...|+.+++...+++.
T Consensus 338 ~~~-~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 338 LMK-HGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHH-CCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999 9999999999999999999654 4568999999999999998888733
No 81
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.75 E-value=9.7e-08 Score=83.77 Aligned_cols=99 Identities=20% Similarity=0.234 Sum_probs=82.1
Q ss_pred HHHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020094 196 YEKMIEANP--GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAV 270 (331)
Q Consensus 196 yerAL~~nP--~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d---~~al~~yA~ll~~~~Gd~deA~~yfekAL 270 (331)
+.+++..++ ....+++++|.++.. .|++++|+.+|++++.++|+. ..++..++.++.. .|++++|+.+|++++
T Consensus 22 ~~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al 99 (172)
T PRK02603 22 ILKILPINKKAKEAFVYYRDGMSAQA-DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS-NGEHDKALEYYHQAL 99 (172)
T ss_pred HHHHcccccHhhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 344444443 456677888888655 899999999999999988763 4688889998888 999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCchHH
Q 020094 271 KSAPDDCYVLASYAKFLWDAGDDEEE 296 (331)
Q Consensus 271 ~ldP~d~~vl~~LA~~L~~lG~~eEa 296 (331)
...|++...+..++.++...++...+
T Consensus 100 ~~~p~~~~~~~~lg~~~~~~g~~~~a 125 (172)
T PRK02603 100 ELNPKQPSALNNIAVIYHKRGEKAEE 125 (172)
T ss_pred HhCcccHHHHHHHHHHHHHcCChHhH
Confidence 99999999999999999998874433
No 82
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.75 E-value=4.1e-07 Score=77.74 Aligned_cols=114 Identities=17% Similarity=0.200 Sum_probs=98.2
Q ss_pred hCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCC
Q 020094 185 NNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKD 258 (331)
Q Consensus 185 s~gd~ekA~e~yerAL~~nP~n---~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d---~~al~~yA~ll~~~~Gd 258 (331)
..++..++...+++++..+|+. ..+.+.+|.+++. .|++++|+..|++++...|++ ..++..++.+++. .|+
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~-~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~-~~~ 100 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE-QGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ-QGQ 100 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-cCC
Confidence 4678899999999999999999 5566778888776 999999999999999988765 4567778988888 999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 259 ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 259 ~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
+++|+..++. +.-.+..+.++..+|.+|...|+.++|...++
T Consensus 101 ~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 101 YDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999966 44455677899999999999999999998886
No 83
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.75 E-value=2.6e-08 Score=73.62 Aligned_cols=61 Identities=25% Similarity=0.347 Sum_probs=30.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020094 221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLAS 282 (331)
Q Consensus 221 ~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~ 282 (331)
.|++++|+++|++++..+|++..++..++.+++. .|++++|+.++++++..+|++..++.-
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK-QGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 4455555555555555555555555555555554 555555555555555555544444433
No 84
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.73 E-value=2.3e-08 Score=77.70 Aligned_cols=79 Identities=19% Similarity=0.256 Sum_probs=70.6
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHH
Q 020094 221 RGDFAKAEELCGRAILANPS--DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQ 298 (331)
Q Consensus 221 ~gd~ekAee~~erALeldP~--d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~ 298 (331)
.+++++|+.+|+++++.+|. +..+++.+|.+++. .|++++|+.++++ ++.++.+..+++.+|.++.++++++||.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 68999999999999999995 56677778999999 9999999999999 88889888999999999999999999998
Q ss_pred hhh
Q 020094 299 DNE 301 (331)
Q Consensus 299 ~~~ 301 (331)
.++
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 776
No 85
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.72 E-value=4.1e-08 Score=72.51 Aligned_cols=67 Identities=22% Similarity=0.261 Sum_probs=60.3
Q ss_pred HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020094 183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 183 y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ 250 (331)
+...|++++|+.+|++++..+|++..++..||.++.. .|++++|++++++++..+|+++.++..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK-QGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3567899999999999999999999999999999776 999999999999999999999988866654
No 86
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.72 E-value=2.5e-07 Score=100.31 Aligned_cols=123 Identities=15% Similarity=0.061 Sum_probs=107.1
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~ 255 (331)
...+|..|...+++++|+++|+++++.+|+++.++..++.++.. .+++++|++.+++++..+|.+...+ .++.++..
T Consensus 105 llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~-~~q~~eAl~~l~~l~~~dp~~~~~l-~layL~~~- 181 (822)
T PRK14574 105 LASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQAD-AGRGGVVLKQATELAERDPTVQNYM-TLSYLNRA- 181 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh-cCCHHHHHHHHHHhcccCcchHHHH-HHHHHHHh-
Confidence 34457799999999999999999999999999999988777555 8999999999999999999977663 55555544
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 256 ~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
.++..+|+..|+++++.+|++..++..+..++.+.|--.-|.+.++
T Consensus 182 ~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 182 TDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred cchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 6788789999999999999999999999999999999888877665
No 87
>PRK15331 chaperone protein SicA; Provisional
Probab=98.71 E-value=1.8e-07 Score=83.42 Aligned_cols=113 Identities=13% Similarity=0.039 Sum_probs=96.9
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~ 255 (331)
.+-+|.-++..|++++|+.+|+-+...+|.|++.+.+||.++.. .++|++|+..|..|..++++||...+..|.+++.
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~-~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~- 117 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL-KKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL- 117 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH-
Confidence 45677888899999999999999999999999999999988655 9999999999999999999999999777777777
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020094 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG 291 (331)
Q Consensus 256 ~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG 291 (331)
.|+.+.|+.+|+.++. .|.+..+.......+..+.
T Consensus 118 l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~ 152 (165)
T PRK15331 118 MRKAAKARQCFELVNE-RTEDESLRAKALVYLEALK 152 (165)
T ss_pred hCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHH
Confidence 9999999999999999 5777766655555554333
No 88
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.70 E-value=1.1e-07 Score=71.23 Aligned_cols=58 Identities=24% Similarity=0.316 Sum_probs=29.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 020094 221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYV 279 (331)
Q Consensus 221 ~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~v 279 (331)
.+++++|+++++++++++|+++..|..+|.+++. .|++++|...|+++++.+|++..+
T Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 8 QEDYEEALEVLERALELDPDDPELWLQRARCLFQ-LGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH-hccHHHHHHHHHHHHHHCCCcHHH
Confidence 4555555555555555555555555445554444 555555555555555555544443
No 89
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.69 E-value=4.9e-07 Score=89.99 Aligned_cols=123 Identities=15% Similarity=0.076 Sum_probs=108.5
Q ss_pred cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHH
Q 020094 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG-NILSLYADLIWQA 255 (331)
Q Consensus 177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~-~al~~yA~ll~~~ 255 (331)
..-|......|+++.|++.+.++.+..|+....+...|.+... +|++++|.+++.++.+..|++. .+...++.++..
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~-~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~- 165 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQ-RGDEARANQHLEEAAELAGNDNILVEIARTRILLA- 165 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH-
Confidence 3445666778999999999999999999887777777787655 8999999999999999999886 566667888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 256 ~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
.|++++|+..++++++..|+++.++..++.++...|+++++.+.++
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~ 211 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIID 211 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987776
No 90
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=1.8e-08 Score=98.27 Aligned_cols=127 Identities=9% Similarity=-0.004 Sum_probs=95.2
Q ss_pred cccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll 252 (331)
--+..+.|+++..++++++|.++|+.+++++|.|.+++..+|.-++. .++.+-|..||+|+++..-.++..+.+++.++
T Consensus 290 VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY-~~~PE~AlryYRRiLqmG~~speLf~NigLCC 368 (478)
T KOG1129|consen 290 VTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFY-DNNPEMALRYYRRILQMGAQSPELFCNIGLCC 368 (478)
T ss_pred hhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeecccc-CCChHHHHHHHHHHHHhcCCChHHHhhHHHHH
Confidence 34577889999999999999999999999999999888777755555 78888888888888888888888888887777
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 253 WQAHKDASRAESYFDQAVKSAP---DDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 253 ~~~~Gd~deA~~yfekAL~ldP---~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
+. .+++|-++..|++|+...- .-.++|+|++.+....|++.-|..+++
T Consensus 369 ~y-aqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfr 419 (478)
T KOG1129|consen 369 LY-AQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFR 419 (478)
T ss_pred Hh-hcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHH
Confidence 76 6677777777777666532 224566666666666665555554443
No 91
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.69 E-value=1.3e-07 Score=70.77 Aligned_cols=70 Identities=23% Similarity=0.220 Sum_probs=64.3
Q ss_pred hHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020094 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYA 249 (331)
Q Consensus 179 ~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA 249 (331)
+...|...+++++|++++++++..+|+++.++..+|.++.. .|++.+|.+.|+++++.+|+++.+....+
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQ-LGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH-hccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 35788999999999999999999999999999999999877 99999999999999999999998875443
No 92
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.66 E-value=2.1e-07 Score=101.16 Aligned_cols=117 Identities=13% Similarity=0.101 Sum_probs=97.6
Q ss_pred CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------
Q 020094 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA-------------- 237 (331)
Q Consensus 172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALel-------------- 237 (331)
+...+..+|.||.+++++++|...|+++|+++|+|+.++++||.++.+ . ++++|++++.+||+.
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae-~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W 192 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE-E-DKEKAITYLKKAIYRFIKKKQYVGIEEIW 192 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-h-hHHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 334567899999999999999999999999999999999999999877 5 999999999988865
Q ss_pred ------CCCCHHHHHHHH-------------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020094 238 ------NPSDGNILSLYA-------------------DLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290 (331)
Q Consensus 238 ------dP~d~~al~~yA-------------------~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~l 290 (331)
+|++.+.+..+- +.+|...+++++++.+++++++.+|.|..++..++.+|...
T Consensus 193 ~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~k 270 (906)
T PRK14720 193 SKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEK 270 (906)
T ss_pred HHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHH
Confidence 455555532211 13344478899999999999999999999999999999943
No 93
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.66 E-value=1.9e-07 Score=96.28 Aligned_cols=128 Identities=22% Similarity=0.243 Sum_probs=102.7
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCH
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEA--------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN-----PSDG 242 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~--------nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeld-----P~d~ 242 (331)
.-++|.+|...++|.+|+.+|++|+.+ +|.-+.++.+||.+++. .|+|++|+.+|++|+++- ...+
T Consensus 244 l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~-~GKf~EA~~~~e~Al~I~~~~~~~~~~ 322 (508)
T KOG1840|consen 244 LNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYK-QGKFAEAEEYCERALEIYEKLLGASHP 322 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc-cCChHHHHHHHHHHHHHHHHhhccChH
Confidence 336999999999999999999999987 45556778999999765 999999999999999773 2233
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C---CCHHHHHHHHHHHHHcCCchHHHHhhhhhhc
Q 020094 243 ---NILSLYADLIWQAHKDASRAESYFDQAVKSA-----P---DDCYVLASYAKFLWDAGDDEEEEQDNEESQH 305 (331)
Q Consensus 243 ---~al~~yA~ll~~~~Gd~deA~~yfekAL~ld-----P---~d~~vl~~LA~~L~~lG~~eEa~~~~~~~~~ 305 (331)
..+.+++.++.. ++++++|+.+|++++++- + .-+.++.++|.+|...|+++||...+++...
T Consensus 323 ~v~~~l~~~~~~~~~-~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~ 395 (508)
T KOG1840|consen 323 EVAAQLSELAAILQS-MNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ 395 (508)
T ss_pred HHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 334445555555 999999999999999882 2 3356899999999999999999987774333
No 94
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.64 E-value=7e-08 Score=101.32 Aligned_cols=116 Identities=16% Similarity=0.106 Sum_probs=109.2
Q ss_pred HhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 020094 184 NNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAE 263 (331)
Q Consensus 184 ~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~ 263 (331)
.+.++|+++..+++..+++||-....|+++|.+... ..+++.|.++|.+++.++|++..+|++++-.+.. .++..+|.
T Consensus 496 ~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALq-lek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~-~~~k~ra~ 573 (777)
T KOG1128|consen 496 LSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQ-LEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR-LKKKKRAF 573 (777)
T ss_pred ccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHH-HhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH-HhhhHHHH
Confidence 446899999999999999999999999999988555 9999999999999999999999999999999998 99999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 264 SYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 264 ~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
..+++|++.+-.+-.+|.|+..+..+.|++++|.+.+.
T Consensus 574 ~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 574 RKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred HHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHH
Confidence 99999999998999999999999999999999988775
No 95
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.63 E-value=1.1e-06 Score=87.38 Aligned_cols=124 Identities=12% Similarity=0.108 Sum_probs=100.9
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 020094 180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNY-ARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD 258 (331)
Q Consensus 180 A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nL-A~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd 258 (331)
|......|+++.|..+|+++.+.+|++......+ +.+. ...|++++|+..++++++.+|+++.++..++.++.. .|+
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~-l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~-~gd 202 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQ-LARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIR-TGA 202 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHh
Confidence 5555889999999999999999999987555433 5554 459999999999999999999999999888888877 999
Q ss_pred HHHHHHHHHHHHHh------------------------------------------CCCCHHHHHHHHHHHHHcCCchHH
Q 020094 259 ASRAESYFDQAVKS------------------------------------------APDDCYVLASYAKFLWDAGDDEEE 296 (331)
Q Consensus 259 ~deA~~yfekAL~l------------------------------------------dP~d~~vl~~LA~~L~~lG~~eEa 296 (331)
+++|++.+.++.+. .|+++.++..++..+...|+.++|
T Consensus 203 w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A 282 (398)
T PRK10747 203 WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTA 282 (398)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHH
Confidence 99999666555532 334677788889999999999999
Q ss_pred HHhhhhhhc
Q 020094 297 EQDNEESQH 305 (331)
Q Consensus 297 ~~~~~~~~~ 305 (331)
.+..++.++
T Consensus 283 ~~~L~~~l~ 291 (398)
T PRK10747 283 QQIILDGLK 291 (398)
T ss_pred HHHHHHHHh
Confidence 988885555
No 96
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.62 E-value=5.3e-07 Score=95.24 Aligned_cols=122 Identities=15% Similarity=0.148 Sum_probs=112.5
Q ss_pred chHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020094 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (331)
Q Consensus 178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~G 257 (331)
-.|+.+...+..++|..|+.++-.++|..+..++..|..+ ++.|+.++|.+.|..|+.+||+++.++..+|.++.+ .|
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~-~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle-~G 732 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLL-EVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE-LG 732 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHH-HHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-hC
Confidence 4567777888889999999999999999999999998885 459999999999999999999999999999999998 99
Q ss_pred CHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 258 DASRAES--YFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 258 d~deA~~--yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
+..-|.. .+..|+++||.++++|+++|.++.+.|+.++|-.++.
T Consensus 733 ~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 733 SPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred CcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 8777777 9999999999999999999999999999999988776
No 97
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=2.4e-07 Score=95.16 Aligned_cols=120 Identities=12% Similarity=0.119 Sum_probs=92.8
Q ss_pred hHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHH
Q 020094 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP-------SDGNILSLYADL 251 (331)
Q Consensus 179 ~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP-------~d~~al~~yA~l 251 (331)
++.-|-..++++.|..+|.+|+.+.|.+|.++.-+|.+.+. .+.|.+|..+|+.+++.-+ .....+.++|-+
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~-~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~ 464 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYT-YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA 464 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeeh-HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH
Confidence 56667778888999999999999999999888888877665 6778888888888873221 234456677666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhh
Q 020094 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDN 300 (331)
Q Consensus 252 l~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~ 300 (331)
+.. .+.+++|+.+|++||.+.|.+..++..+|.+|..+|+.+.|..-+
T Consensus 465 ~Rk-l~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~f 512 (611)
T KOG1173|consen 465 YRK-LNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHF 512 (611)
T ss_pred HHH-HhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHH
Confidence 666 888888888888888888888888888888888888888776433
No 98
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.61 E-value=2.6e-07 Score=88.88 Aligned_cols=80 Identities=15% Similarity=0.103 Sum_probs=76.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhh
Q 020094 221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDN 300 (331)
Q Consensus 221 ~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~ 300 (331)
.++|.+|+..|.+||+++|+|+.+|.+.|.++.. .|.++.|++-.+.||.+||.....|..++.+|..+|++++|..-+
T Consensus 94 ~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~-Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ay 172 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSK-LGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAY 172 (304)
T ss_pred hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH-hcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 7899999999999999999999999999999999 999999999999999999999999999999999999999998665
Q ss_pred h
Q 020094 301 E 301 (331)
Q Consensus 301 ~ 301 (331)
+
T Consensus 173 k 173 (304)
T KOG0553|consen 173 K 173 (304)
T ss_pred H
Confidence 4
No 99
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.59 E-value=2.2e-07 Score=100.00 Aligned_cols=130 Identities=16% Similarity=0.091 Sum_probs=71.4
Q ss_pred CCcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020094 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN-ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYA 249 (331)
Q Consensus 171 g~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n-~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA 249 (331)
+|-+++.+-|.+.+..++|-.|+.||+++|.++|.. ++.....|.+++. .++.+.|+..|.||+++||++..++..++
T Consensus 162 ~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~k-l~~~~~a~~a~~ralqLdp~~v~alv~L~ 240 (1018)
T KOG2002|consen 162 DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWK-LGMSEKALLAFERALQLDPTCVSALVALG 240 (1018)
T ss_pred cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHh-ccchhhHHHHHHHHHhcChhhHHHHHHHH
Confidence 455566666666666666666666666666666653 2233334444333 55555566666666666665555555554
Q ss_pred HHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 250 DLIWQA--HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 250 ~ll~~~--~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
.+-... ...+..|+..+.+|...+|.|+.++-.|+..++-.|+++.+....+
T Consensus 241 ~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~ 294 (1018)
T KOG2002|consen 241 EVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAE 294 (1018)
T ss_pred HHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHH
Confidence 443331 1224455555555555555555555555555555555555554444
No 100
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.57 E-value=8.8e-07 Score=91.36 Aligned_cols=125 Identities=22% Similarity=0.233 Sum_probs=106.6
Q ss_pred cccchHHHHHhCCCcHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------
Q 020094 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEA--------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN-------- 238 (331)
Q Consensus 175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~--------nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeld-------- 238 (331)
...|++..+..+++++.|+.+|++++++ ++.-+.+..+||.+++. .|+|++|+++|++||++.
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~-~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLK-MGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHhcccCcC
Confidence 3678999999999999999999999986 33457788999999766 999999999999999875
Q ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 239 PSDGNILSLYADLIWQAHKDASRAESYFDQAVKS-------APDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 239 P~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~l-------dP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
+....++..++..+.+ .+++.+|...|.+++.+ .|+-.+.+.+|+.+|..+|+++.|.+..+
T Consensus 406 ~~~~~~l~~la~~~~~-~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~ 474 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEE-LKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEE 474 (508)
T ss_pred hhhhHHHHHHHHHHHH-hcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 3345667789999988 99999999999999887 44557899999999999999999986443
No 101
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=1e-06 Score=83.53 Aligned_cols=112 Identities=18% Similarity=0.250 Sum_probs=88.5
Q ss_pred chHHHHHhCCCcHHHHHHHHHHHHhCC----------------------------------CCHHHHHHHHHHHHHHcCC
Q 020094 178 SNNNYSNNNHGSSSTDAYYEKMIEANP----------------------------------GNALLLGNYARFLKEVRGD 223 (331)
Q Consensus 178 N~A~~y~s~gd~ekA~e~yerAL~~nP----------------------------------~n~~~l~nLA~~L~~~~gd 223 (331)
-.|.++...+.+++|+++|+..|+.|| .|+++|..++.++.. .++
T Consensus 91 lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~-~~~ 169 (289)
T KOG3060|consen 91 LKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLS-EGD 169 (289)
T ss_pred HHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-HhH
Confidence 466777777777777777777777665 556667778877554 899
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020094 224 FAKAEELCGRAILANPSDGNILSLYADLIWQAHK---DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG 291 (331)
Q Consensus 224 ~ekAee~~erALeldP~d~~al~~yA~ll~~~~G---d~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG 291 (331)
|++|..||++.|-.+|.++.++..|+.++|- +| ++.-|.+||.+|++++|.+...++.+..+-+.+-
T Consensus 170 f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt-~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 170 FEKAAFCLEELLLIQPFNPLYFQRLAEVLYT-QGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALA 239 (289)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887 54 5678899999999999988888877765555443
No 102
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.56 E-value=6.4e-07 Score=80.94 Aligned_cols=97 Identities=21% Similarity=0.151 Sum_probs=75.9
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--cC-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc---
Q 020094 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEV--RG-------DFAKAEELCGRAILANPSDGNILSLYADLIWQAH--- 256 (331)
Q Consensus 189 ~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~--~g-------d~ekAee~~erALeldP~d~~al~~yA~ll~~~~--- 256 (331)
++.|.+.++..+..||.+++++++.|.+|.+. .. -+++|+.-|+.||.++|+..+++..++..+.. +
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts-~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS-LAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-HHhh
Confidence 58899999999999999999999999887663 12 25779999999999999999999999988876 3
Q ss_pred --------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094 257 --------KDASRAESYFDQAVKSAPDDCYVLASYAKF 286 (331)
Q Consensus 257 --------Gd~deA~~yfekAL~ldP~d~~vl~~LA~~ 286 (331)
..|++|..||++|++.+|.|..++-.|..+
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 237899999999999999998776666554
No 103
>PRK15331 chaperone protein SicA; Provisional
Probab=98.55 E-value=3.6e-07 Score=81.44 Aligned_cols=97 Identities=12% Similarity=-0.051 Sum_probs=88.8
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020094 203 NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLAS 282 (331)
Q Consensus 203 nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~ 282 (331)
.++.-+.++.+|.-++. .|++++|+.+|+-+...||.|+.+|..+|.++.. .++|++|+..|..|..++++|+...+.
T Consensus 33 s~~~le~iY~~Ay~~y~-~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~-~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYN-QGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL-KKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcccCCCCccch
Confidence 44455667888877776 9999999999999999999999999999988888 999999999999999999999999999
Q ss_pred HHHHHHHcCCchHHHHhhh
Q 020094 283 YAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 283 LA~~L~~lG~~eEa~~~~~ 301 (331)
.|.|+..+++.++|...++
T Consensus 111 agqC~l~l~~~~~A~~~f~ 129 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFE 129 (165)
T ss_pred HHHHHHHhCCHHHHHHHHH
Confidence 9999999999999998776
No 104
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=1.2e-06 Score=83.01 Aligned_cols=115 Identities=16% Similarity=0.145 Sum_probs=102.6
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 020094 185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAES 264 (331)
Q Consensus 185 s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~ 264 (331)
..+...-|..|+++.-...|+........|.++. ..+++++|+++|++.++-||.|..++.....++- .+|+--+|++
T Consensus 64 d~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lE-a~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk-a~GK~l~aIk 141 (289)
T KOG3060|consen 64 DTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLE-ATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILK-AQGKNLEAIK 141 (289)
T ss_pred HhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHH-HhhchhhHHHHHHHHhccCcchhHHHHHHHHHHH-HcCCcHHHHH
Confidence 3477899999999999999999999999998865 4999999999999999999999988865544444 4899999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 265 YFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 265 yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
.+...++..+.|.++|..++.+|...++++.|.=++|
T Consensus 142 ~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 142 ELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 9999999999999999999999999999999987777
No 105
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.54 E-value=6.1e-07 Score=90.72 Aligned_cols=131 Identities=23% Similarity=0.152 Sum_probs=76.7
Q ss_pred cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020094 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH 256 (331)
Q Consensus 177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~ 256 (331)
.|.+..+...++.++|+++|-++-.+--++.+++.++|.++. ...+..+|+++|-++..+=|+||.++..++.++-+ .
T Consensus 528 fniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye-~led~aqaie~~~q~~slip~dp~ilskl~dlydq-e 605 (840)
T KOG2003|consen 528 FNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE-LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQ-E 605 (840)
T ss_pred HHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc-c
Confidence 344445555555555555555555555555666666666633 36666667777777777777777776665554433 3
Q ss_pred CC----------------------------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhh
Q 020094 257 KD----------------------------------ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEE 302 (331)
Q Consensus 257 Gd----------------------------------~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~ 302 (331)
|+ .++|+.||++|--+.|+.......++.|+.+.|++..|-..++
T Consensus 606 gdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk- 684 (840)
T KOG2003|consen 606 GDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYK- 684 (840)
T ss_pred cchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHH-
Confidence 33 2355566666666666666666666666666666666666665
Q ss_pred hhcccCCCCCCCC
Q 020094 303 SQHQTDHSHTSPP 315 (331)
Q Consensus 303 ~~~~~~~~~~~~~ 315 (331)
+++..||.
T Consensus 685 -----~~hrkfpe 692 (840)
T KOG2003|consen 685 -----DIHRKFPE 692 (840)
T ss_pred -----HHHHhCcc
Confidence 45555554
No 106
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=5.8e-07 Score=92.44 Aligned_cols=124 Identities=16% Similarity=0.088 Sum_probs=109.6
Q ss_pred hHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 020094 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD 258 (331)
Q Consensus 179 ~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd 258 (331)
.|-+|...+++.+|..||.++-.+||....+|..||..+.. .+.-++|+.+|.+|-++-|.--.-...++.-+. .+++
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~-e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~-~t~n 395 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAG-EGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYM-RTNN 395 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhh-cchHHHHHHHHHHHHHhccCCcchHHHHHHHHH-Hhcc
Confidence 56788889999999999999999999999999999988665 899999999999999999975544433444444 4999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhhhh
Q 020094 259 ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEESQ 304 (331)
Q Consensus 259 ~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~~ 304 (331)
++.|..+|.+|+.++|.|+.++-.+|.+....+.+.+|.+.++...
T Consensus 396 ~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l 441 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKAL 441 (611)
T ss_pred HHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888444
No 107
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=3.2e-07 Score=92.70 Aligned_cols=128 Identities=16% Similarity=0.142 Sum_probs=112.1
Q ss_pred CCcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020094 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 171 g~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ 250 (331)
=|+.-..|-+...+.+|++++|.+.|+++|.-+....++++++|... +.+|++++|+.+|.+.-.+--+++.|++.++.
T Consensus 488 yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~-e~~~~ldeald~f~klh~il~nn~evl~qian 566 (840)
T KOG2003|consen 488 YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTA-EALGNLDEALDCFLKLHAILLNNAEVLVQIAN 566 (840)
T ss_pred cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccH-HHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34444556666667789999999999999999999999999999774 45999999999998887777788999999998
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhh
Q 020094 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDN 300 (331)
Q Consensus 251 ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~ 300 (331)
++-. +.+..+|+++|.++..+-|+|+.++..|+.+|-+.|+..+|..+.
T Consensus 567 iye~-led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ 615 (840)
T KOG2003|consen 567 IYEL-LEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCH 615 (840)
T ss_pred HHHH-hhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhh
Confidence 8777 999999999999999999999999999999999999999887544
No 108
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.53 E-value=6.8e-07 Score=90.46 Aligned_cols=69 Identities=17% Similarity=0.072 Sum_probs=57.7
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020094 202 ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNI---LSLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 202 ~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~a---l~~yA~ll~~~~Gd~deA~~yfekAL~l 272 (331)
.+|+++.+++|+|.+|+. .|+|++|+.+|++||+++|+++.+ |+++|.++.. +|++++|+.+|++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~-lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~-LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFS-KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY-REEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 578888888888888776 888888888888888888888854 7788888877 88888888888888887
No 109
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=7.1e-07 Score=91.22 Aligned_cols=103 Identities=15% Similarity=0.143 Sum_probs=95.4
Q ss_pred HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 020094 183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRA 262 (331)
Q Consensus 183 y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA 262 (331)
.+..++|+.|+.+|.++|.++|.|...+.|-..++.. +++|.+|.+-..+.++++|+.+..|...+..+.- .|+|++|
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~-~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~-lg~~~eA 89 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYAS-LGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG-LGDYEEA 89 (539)
T ss_pred hcccccHHHHHHHHHHHHccCCCccchhcchHHHHHH-HhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh-cccHHHH
Confidence 4566999999999999999999998888887766544 8999999999999999999999999999999998 9999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094 263 ESYFDQAVKSAPDDCYVLASYAKFL 287 (331)
Q Consensus 263 ~~yfekAL~ldP~d~~vl~~LA~~L 287 (331)
+..|.+.|+.+|+|...+..++.++
T Consensus 90 ~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 90 ILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHhhcCCchHHHHHhHHHhh
Confidence 9999999999999999999998888
No 110
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.49 E-value=4.5e-06 Score=70.71 Aligned_cols=95 Identities=14% Similarity=0.112 Sum_probs=82.0
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHH
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS---DGNILSLYA 249 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n---~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~---d~~al~~yA 249 (331)
.++.|..+...|+.++|+.+|+++++..... ..++.++|..+.. .|++++|+..+++++...|+ +..+...++
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~-LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRN-LGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 4578889999999999999999999975444 5678889988665 99999999999999999888 888888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Q 020094 250 DLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 250 ~ll~~~~Gd~deA~~yfekAL~l 272 (331)
.+++. .|+.++|+..+-.++.-
T Consensus 83 l~L~~-~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 83 LALYN-LGRPKEALEWLLEALAE 104 (120)
T ss_pred HHHHH-CCCHHHHHHHHHHHHHH
Confidence 98998 99999999999888873
No 111
>PRK11906 transcriptional regulator; Provisional
Probab=98.48 E-value=2.1e-06 Score=87.15 Aligned_cols=111 Identities=8% Similarity=0.035 Sum_probs=93.1
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020094 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF 266 (331)
Q Consensus 187 gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yf 266 (331)
.+..+|.++-++|++++|.|+.++..+|.++.. .++++.|+..|++|+.++|+.+.+|+.+++++.. .|+.++|++.+
T Consensus 318 ~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~-~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~-~G~~~~a~~~i 395 (458)
T PRK11906 318 LAAQKALELLDYVSDITTVDGKILAIMGLITGL-SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH-NEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 356889999999999999999999999998877 8889999999999999999999999999999998 99999999999
Q ss_pred HHHHHhCC-CCHHHHHHHHH-HHHHcCCchHHHHhh
Q 020094 267 DQAVKSAP-DDCYVLASYAK-FLWDAGDDEEEEQDN 300 (331)
Q Consensus 267 ekAL~ldP-~d~~vl~~LA~-~L~~lG~~eEa~~~~ 300 (331)
++|++++| .-......+.. .|. ..-.+++.+.+
T Consensus 396 ~~alrLsP~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 430 (458)
T PRK11906 396 DKSLQLEPRRRKAVVIKECVDMYV-PNPLKNNIKLY 430 (458)
T ss_pred HHHhccCchhhHHHHHHHHHHHHc-CCchhhhHHHH
Confidence 99999999 44444555554 333 33444555444
No 112
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.48 E-value=2.9e-06 Score=91.61 Aligned_cols=131 Identities=17% Similarity=0.108 Sum_probs=107.3
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGD---FAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd---~ekAee~~erALeldP~d~~al~~yA~ll 252 (331)
....+.|+.+.+.-+.|+..|++++++||.+..++..||.+... ..+ +.++...+.+|...+|+||.++..++..+
T Consensus 202 rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~-~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~f 280 (1018)
T KOG2002|consen 202 RIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLN-FNDSDSYKKGVQLLQRAYKENNENPVALNHLANHF 280 (1018)
T ss_pred cchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHH
Confidence 34456788899999999999999999999999999999977443 443 78899999999999999999998888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCchHHHHhhhhhhcccC
Q 020094 253 WQAHKDASRAESYFDQAVKSAPDD---CYVLASYAKFLWDAGDDEEEEQDNEESQHQTD 308 (331)
Q Consensus 253 ~~~~Gd~deA~~yfekAL~ldP~d---~~vl~~LA~~L~~lG~~eEa~~~~~~~~~~~~ 308 (331)
|. .|+|..+..++..|++..-.. .+.+|.+|..|-..|++++|.+-+.++.+..+
T Consensus 281 yf-K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~ 338 (1018)
T KOG2002|consen 281 YF-KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN 338 (1018)
T ss_pred hh-cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC
Confidence 87 888888888888888776433 34578888888888888888887776666443
No 113
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.47 E-value=3.1e-06 Score=80.58 Aligned_cols=95 Identities=18% Similarity=0.134 Sum_probs=81.9
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHH
Q 020094 206 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPD---DCYV 279 (331)
Q Consensus 206 n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d---~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~---d~~v 279 (331)
+....+..|..+....++|++|+..|++.++..|++ +.+++.+|.+++. .|++++|+.+|+++++..|+ ..++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~-~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN-KGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 344555555554444799999999999999999998 5788889999998 99999999999999999886 5789
Q ss_pred HHHHHHHHHHcCCchHHHHhhh
Q 020094 280 LASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 280 l~~LA~~L~~lG~~eEa~~~~~ 301 (331)
++.+|.++...|+.++|.+.++
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~ 241 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQ 241 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999887
No 114
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.47 E-value=3e-06 Score=71.83 Aligned_cols=93 Identities=20% Similarity=0.121 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHH
Q 020094 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPD---DCYVL 280 (331)
Q Consensus 207 ~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d---~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~---d~~vl 280 (331)
|.+++++|.++.. .|+.++|+.+|++|+...... ..++..++..+.. .|++++|+..+++++...|+ +..+.
T Consensus 1 ~~~~~~~A~a~d~-~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~-LG~~deA~~~L~~~~~~~p~~~~~~~l~ 78 (120)
T PF12688_consen 1 PRALYELAWAHDS-LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRN-LGRYDEALALLEEALEEFPDDELNAALR 78 (120)
T ss_pred CchHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCccccHHHH
Confidence 3567889999655 999999999999999987655 4677789998998 99999999999999999898 88899
Q ss_pred HHHHHHHHHcCCchHHHHhhh
Q 020094 281 ASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 281 ~~LA~~L~~lG~~eEa~~~~~ 301 (331)
..++.++...|+.+|+..++-
T Consensus 79 ~f~Al~L~~~gr~~eAl~~~l 99 (120)
T PF12688_consen 79 VFLALALYNLGRPKEALEWLL 99 (120)
T ss_pred HHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999986653
No 115
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.45 E-value=1.6e-06 Score=74.12 Aligned_cols=92 Identities=17% Similarity=0.189 Sum_probs=78.5
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n---~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll 252 (331)
...+|..+...|++++|+..|++++...|+. +.+...+|.++.. .+++++|+..++. +.-.+-.+.++...|.++
T Consensus 51 ~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~-~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~ 128 (145)
T PF09976_consen 51 ALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ-QGQYDEALATLQQ-IPDEAFKALAAELLGDIY 128 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHh-ccCcchHHHHHHHHHHHH
Confidence 4568899999999999999999999988765 4567788988765 9999999999966 445566778888888888
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 020094 253 WQAHKDASRAESYFDQAV 270 (331)
Q Consensus 253 ~~~~Gd~deA~~yfekAL 270 (331)
.. .|++++|+..|++||
T Consensus 129 ~~-~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 129 LA-QGDYDEARAAYQKAL 145 (145)
T ss_pred HH-CCCHHHHHHHHHHhC
Confidence 88 999999999999985
No 116
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.43 E-value=1.3e-06 Score=83.32 Aligned_cols=122 Identities=17% Similarity=0.253 Sum_probs=102.7
Q ss_pred chHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020094 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (331)
Q Consensus 178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~G 257 (331)
.|.+|..+.++.+.|..+|.+|++..+-+..+|..+|.+-+...+|.+.|..+|+++++.-|.+..+|..|..++.. .+
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~-~~ 84 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK-LN 84 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hC
Confidence 46678888888999999999999777778999999998866656777889999999999999999999999999998 99
Q ss_pred CHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCchHHHHhh
Q 020094 258 DASRAESYFDQAVKSAPDDC---YVLASYAKFLWDAGDDEEEEQDN 300 (331)
Q Consensus 258 d~deA~~yfekAL~ldP~d~---~vl~~LA~~L~~lG~~eEa~~~~ 300 (331)
+.+.|..+|++++..-|.+. .+|..+..+..+.|+.+...+..
T Consensus 85 d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~ 130 (280)
T PF05843_consen 85 DINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVE 130 (280)
T ss_dssp -HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999988544 79999999999999877666544
No 117
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.42 E-value=4e-06 Score=89.91 Aligned_cols=125 Identities=18% Similarity=0.178 Sum_probs=105.6
Q ss_pred cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~ 254 (331)
-..-+|.+|...|+.+++..++-.|.-++|.+.+.|..++..... ++++.+|.-||.|||+++|.+-...+..+.++.+
T Consensus 175 ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~-~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~ 253 (895)
T KOG2076|consen 175 AYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ-LGNINQARYCYSRAIQANPSNWELIYERSSLYQK 253 (895)
T ss_pred hHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh-cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 356789999999999999999999999999999999999998655 9999999999999999999999888899998887
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHcCCchHHHHhhh
Q 020094 255 AHKDASRAESYFDQAVKSAPDDCY-----VLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 255 ~~Gd~deA~~yfekAL~ldP~d~~-----vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
+|+..+|...|.+++.++|.... .-...+..+...++.+-|.+.++
T Consensus 254 -~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 254 -TGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred -hChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999999999999992221 22344556666666666665555
No 118
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.38 E-value=5.4e-06 Score=84.15 Aligned_cols=125 Identities=15% Similarity=0.099 Sum_probs=106.0
Q ss_pred CCcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020094 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 171 g~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ 250 (331)
+|.-+..-.++++...++..+|.+.+++++.++|+.+....+||.++.. .|++++|+.++.+.+..+|+|+..|..++.
T Consensus 338 ~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~-~g~~~eai~~L~~~~~~~p~dp~~w~~LAq 416 (484)
T COG4783 338 DNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLK-GGKPQEAIRILNRYLFNDPEDPNGWDLLAQ 416 (484)
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCCCchHHHHHHH
Confidence 6777777788999999999999999999999999999999999999876 999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCchHHH
Q 020094 251 LIWQAHKDASRAESYFDQAVKSAP--DDCYVLASYAKFLWDAGDDEEEE 297 (331)
Q Consensus 251 ll~~~~Gd~deA~~yfekAL~ldP--~d~~vl~~LA~~L~~lG~~eEa~ 297 (331)
.+-+ +|+..+|...+-.++.++- +...+....+.-..+.+-...+.
T Consensus 417 ay~~-~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR 464 (484)
T COG4783 417 AYAE-LGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVKLGFPDWAR 464 (484)
T ss_pred HHHH-hCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccCCcHHHHH
Confidence 8888 9999999888888888766 44445555555555555555443
No 119
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.34 E-value=2.5e-06 Score=90.27 Aligned_cols=97 Identities=14% Similarity=0.158 Sum_probs=87.7
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020094 180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEE--LCGRAILANPSDGNILSLYADLIWQAHK 257 (331)
Q Consensus 180 A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee--~~erALeldP~d~~al~~yA~ll~~~~G 257 (331)
+..+...+++++|+++|..++.+||+++.....+|.++.+ .|+..-|+. .+..|+++||.|+.+|+.+|.++.. .|
T Consensus 691 G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle-~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~-~G 768 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE-LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK-LG 768 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cc
Confidence 4677778999999999999999999999999999999766 888777777 9999999999999999888887777 99
Q ss_pred CHHHHHHHHHHHHHhCCCCHH
Q 020094 258 DASRAESYFDQAVKSAPDDCY 278 (331)
Q Consensus 258 d~deA~~yfekAL~ldP~d~~ 278 (331)
+.++|..+|..|+++++.++.
T Consensus 769 d~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 769 DSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred chHHHHHHHHHHHhhccCCCc
Confidence 999999999999999987763
No 120
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.34 E-value=1.7e-06 Score=90.24 Aligned_cols=108 Identities=15% Similarity=0.083 Sum_probs=66.4
Q ss_pred CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 020094 186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESY 265 (331)
Q Consensus 186 ~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~y 265 (331)
.++|.+.+...+.+|...|.+++.+...|..|+. .|+.++|..+++.++..|+....+|-.+|.+... .++|++|+++
T Consensus 20 ~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~-lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~-dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNC-LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS-DKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHHhCCccchhHHhccchhhc-ccchHHHHHHHHHHhccCcccchhHHHHHHHHhh-hhhHHHHHHH
Confidence 3456666666666666666666666666655554 6666666666666666666666666555444333 6666666666
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCchH
Q 020094 266 FDQAVKSAPDDCYVLASYAKFLWDAGDDEE 295 (331)
Q Consensus 266 fekAL~ldP~d~~vl~~LA~~L~~lG~~eE 295 (331)
|+.|++++|+|-.+|+.++.+..++++++-
T Consensus 98 y~nAl~~~~dN~qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 98 YRNALKIEKDNLQILRDLSLLQIQMRDYEG 127 (700)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhhh
Confidence 666666666666666666666666555443
No 121
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=4.1e-06 Score=84.01 Aligned_cols=129 Identities=16% Similarity=0.140 Sum_probs=108.3
Q ss_pred CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-------------------------------
Q 020094 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEV------------------------------- 220 (331)
Q Consensus 172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~------------------------------- 220 (331)
|--+..-+|++|+..|++.+|+..|+++.-+||.+....--||.++...
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l 310 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLL 310 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhh
Confidence 3334667899999999999999999999999999887766666554331
Q ss_pred --cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHH
Q 020094 221 --RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQ 298 (331)
Q Consensus 221 --~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~ 298 (331)
.++|..|+-+.+++|+.+|++..++.+.+.++.. .++.++|+-.|+.|+.+.|.+.++|..|..+|...+.+.||..
T Consensus 311 ~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~-~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~ 389 (564)
T KOG1174|consen 311 YDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIA-LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANA 389 (564)
T ss_pred hhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHh-ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHH
Confidence 3467778888899999999999999888888887 9999999999999999999999999999999999999988875
Q ss_pred hhh
Q 020094 299 DNE 301 (331)
Q Consensus 299 ~~~ 301 (331)
...
T Consensus 390 ~An 392 (564)
T KOG1174|consen 390 LAN 392 (564)
T ss_pred HHH
Confidence 544
No 122
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=3.4e-06 Score=84.02 Aligned_cols=98 Identities=12% Similarity=0.093 Sum_probs=87.0
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~ 255 (331)
..|+|.||.+.++|.+|+.++.++|+.+|+|..+++.-|.++.. .++|+.|+..|++|++++|+|..+...+..+-...
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~-~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLA-LGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh-hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999766 99999999999999999999999998887776663
Q ss_pred cCCHHHHHHHHHHHHHhCC
Q 020094 256 HKDASRAESYFDQAVKSAP 274 (331)
Q Consensus 256 ~Gd~deA~~yfekAL~ldP 274 (331)
....++..+.|.+++..-+
T Consensus 339 ~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHhhccc
Confidence 4445566788888888765
No 123
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.33 E-value=5.1e-06 Score=90.58 Aligned_cols=127 Identities=11% Similarity=0.031 Sum_probs=103.2
Q ss_pred CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH-----------------HHHH
Q 020094 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEEL-----------------CGRA 234 (331)
Q Consensus 172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~-----------------~erA 234 (331)
+..-...+...|...+++++|++.++.+++.+|+...+++.+|.+++. .+++.+|.-. +-..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q-~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~ 108 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLS-RRPLNDSNLLNLIDSFSQNLKWAIVEHICDK 108 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHh-hcchhhhhhhhhhhhcccccchhHHHHHHHH
Confidence 334455677888899999999999999999999999999999986544 6666554433 3333
Q ss_pred HHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 235 ILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 235 LeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
+...+++..+++.+|.+|-. +|+.++|...|+++++++|+|+.++-++|..|... +.++|..-.+
T Consensus 109 i~~~~~~k~Al~~LA~~Ydk-~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 109 ILLYGENKLALRTLAEAYAK-LNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred HHhhhhhhHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 33344445999999887777 99999999999999999999999999999999999 9988875443
No 124
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.32 E-value=1.9e-06 Score=84.93 Aligned_cols=113 Identities=19% Similarity=0.101 Sum_probs=95.9
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 020094 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS 260 (331)
Q Consensus 181 ~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~d 260 (331)
.-|+++|.|++|+.||.+++.++|.|+-.+.|-|.+++. +..|..|+.-|..||.+|--...+|...+..-.. .|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk-~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~-Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLK-QKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES-LGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHH-HHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH-HhhHH
Confidence 457888999999999999999999999999999988655 9999999999999999999888888777777776 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHh
Q 020094 261 RAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQD 299 (331)
Q Consensus 261 eA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~ 299 (331)
||.+-++.+|++.|++.+..-.++. .....|++..
T Consensus 183 EAKkD~E~vL~LEP~~~ELkK~~a~----i~Sl~E~~I~ 217 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNIELKKSLAR----INSLRERKIA 217 (536)
T ss_pred HHHHhHHHHHhhCcccHHHHHHHHH----hcchHhhhHH
Confidence 9999999999999997766554444 3445555433
No 125
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.31 E-value=3.5e-06 Score=88.85 Aligned_cols=130 Identities=12% Similarity=0.037 Sum_probs=112.2
Q ss_pred ccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH---------------------------HHHcCCHHH
Q 020094 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFL---------------------------KEVRGDFAK 226 (331)
Q Consensus 174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L---------------------------~~~~gd~ek 226 (331)
.+..+...||...|+..+|..+..+-++ +|.++.+|..+|.++ ....++|.+
T Consensus 425 emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~ 503 (777)
T KOG1128|consen 425 EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSE 503 (777)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHH
Confidence 3567888999999999999999999998 777777776665442 111468999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhhhhc
Q 020094 227 AEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEESQH 305 (331)
Q Consensus 227 Aee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~~~ 305 (331)
+.+++++.++++|-....|+.++-+.++ .+++..|..+|.+++.++|++...|-|++.+|.+.++..+|-..++|-++
T Consensus 504 ~~~hle~sl~~nplq~~~wf~~G~~ALq-lek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK 581 (777)
T KOG1128|consen 504 ADKHLERSLEINPLQLGTWFGLGCAALQ-LEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK 581 (777)
T ss_pred HHHHHHHHhhcCccchhHHHhccHHHHH-HhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh
Confidence 9999999999999999999999998888 99999999999999999999999999999999999999999876664443
No 126
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.28 E-value=2.9e-06 Score=83.16 Aligned_cols=127 Identities=9% Similarity=-0.031 Sum_probs=102.6
Q ss_pred CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l 251 (331)
+..-..-++++|.++.+-+.|+..|.+.+...|.+.-.+...|.++.. .++++.|.++|+++++++|.|..+..-.+..
T Consensus 255 ~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea-m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~ 333 (478)
T KOG1129|consen 255 HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA-MEQQEDALQLYKLVLKLHPINVEAIACIAVG 333 (478)
T ss_pred chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH-HHhHHHHHHHHHHHHhcCCccceeeeeeeec
Confidence 333344466677777777777777777777778887778888888554 8899999999999999999999998888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhh
Q 020094 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDN 300 (331)
Q Consensus 252 l~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~ 300 (331)
++. -++.+-|+.||++.++..-.+++.+.|+|.|..-.++++-.--.+
T Consensus 334 yfY-~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 334 YFY-DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred ccc-CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 888 899999999999999999999999999999988888776654433
No 127
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=1.8e-06 Score=86.38 Aligned_cols=118 Identities=17% Similarity=0.099 Sum_probs=96.2
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCCHHHH------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHH
Q 020094 182 YSNNNHGSSSTDAYYEKMIEANPGNALLL------------GNYARFLKEVRGDFAKAEELCGRAILANPSDG----NIL 245 (331)
Q Consensus 182 ~y~s~gd~ekA~e~yerAL~~nP~n~~~l------------~nLA~~L~~~~gd~ekAee~~erALeldP~d~----~al 245 (331)
+++...+.++|+..|+++|+++|+....- ..-|.-++. .|+|.+|.++|..||.+||++. ..|
T Consensus 212 ~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk-~G~y~~A~E~Yteal~idP~n~~~naklY 290 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFK-NGNYRKAYECYTEALNIDPSNKKTNAKLY 290 (486)
T ss_pred ccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhh-ccchhHHHHHHHHhhcCCccccchhHHHH
Confidence 45556788999999999999999875542 233444454 7899999999999999999744 445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 246 SLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 246 ~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
.+.+.+... .|+..+|+.-.+.|+++||.-...+...|.++..+++++++-.+++
T Consensus 291 ~nra~v~~r-Lgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 291 GNRALVNIR-LGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYE 345 (486)
T ss_pred HHhHhhhcc-cCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777 8999999999999999999999999999999999999999976665
No 128
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.28 E-value=1.2e-05 Score=78.69 Aligned_cols=123 Identities=14% Similarity=0.082 Sum_probs=104.6
Q ss_pred cchHHHHHhCCCcHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGN-----ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n-----~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l 251 (331)
-.+...|....++++|++.-++...+.+.+ +.++.-||..+. ...+.++|.+.+.+|++.||+...+-..++.+
T Consensus 145 qqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~-~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v 223 (389)
T COG2956 145 QQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL-ASSDVDRARELLKKALQADKKCVRASIILGRV 223 (389)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHhhCccceehhhhhhHH
Confidence 457788999999999999999999998875 334455555533 36789999999999999999999999889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 252 IWQAHKDASRAESYFDQAVKSAPDD-CYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 252 l~~~~Gd~deA~~yfekAL~ldP~d-~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
... .|+|+.|++.++++++.||+- .++...|..+|..+|+.++....+.
T Consensus 224 ~~~-~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~ 273 (389)
T COG2956 224 ELA-KGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLR 273 (389)
T ss_pred HHh-ccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 888 999999999999999999944 6899999999999999988875554
No 129
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.27 E-value=2.6e-05 Score=73.22 Aligned_cols=125 Identities=16% Similarity=0.068 Sum_probs=97.8
Q ss_pred cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH
Q 020094 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLL---GNYARFLKEVRGDFAKAEELCGRAILANPSDG---NILSLY 248 (331)
Q Consensus 175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l---~nLA~~L~~~~gd~ekAee~~erALeldP~d~---~al~~y 248 (331)
-.+..|.-+...+++++|++.|++++...|..+.+. +.+|.+++. .++|++|+.++++.++++|+++ ++++..
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~-~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~ 112 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NADLPLAQAAIDRFIRLNPTHPNIDYVLYMR 112 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence 355678888889999999999999999999987765 788888776 9999999999999999999764 556666
Q ss_pred HHHHHHHcC---------------C---HHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCc
Q 020094 249 ADLIWQAHK---------------D---ASRAESYFDQAVKSAPDDCYVL-----------------ASYAKFLWDAGDD 293 (331)
Q Consensus 249 A~ll~~~~G---------------d---~deA~~yfekAL~ldP~d~~vl-----------------~~LA~~L~~lG~~ 293 (331)
|...+. .+ | ..+|+..|++.++.-|+..++- +.+|.+|.+.|.+
T Consensus 113 g~~~~~-~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y 191 (243)
T PRK10866 113 GLTNMA-LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAY 191 (243)
T ss_pred HHhhhh-cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 655322 21 1 3578899999999999776532 3457778888887
Q ss_pred hHHHHhhh
Q 020094 294 EEEEQDNE 301 (331)
Q Consensus 294 eEa~~~~~ 301 (331)
.-|..-++
T Consensus 192 ~AA~~r~~ 199 (243)
T PRK10866 192 VAVVNRVE 199 (243)
T ss_pred HHHHHHHH
Confidence 66665555
No 130
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.26 E-value=6.3e-06 Score=79.35 Aligned_cols=117 Identities=15% Similarity=0.058 Sum_probs=94.7
Q ss_pred hHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020094 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG--DFAKAEELCGRAILANPSDGNILSLYADLIWQAH 256 (331)
Q Consensus 179 ~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~g--d~ekAee~~erALeldP~d~~al~~yA~ll~~~~ 256 (331)
...+|..+++.+.|...++++.+.+.+...+...-|++... .| .+.+|..+|+...+..+..+.+++..+.+... +
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~-~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~-~ 214 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLA-TGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ-L 214 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHH-HTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH-C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-hCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-h
Confidence 55788999999999999999988887766555555555333 34 59999999999888888899999888888888 9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020094 257 KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEE 297 (331)
Q Consensus 257 Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~ 297 (331)
|++++|+..+++|++.+|++++++.|++.+...+|+..++.
T Consensus 215 ~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~ 255 (290)
T PF04733_consen 215 GHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAA 255 (290)
T ss_dssp T-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHH
T ss_pred CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHH
Confidence 99999999999999999999999999999999999985443
No 131
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.25 E-value=1.5e-06 Score=66.09 Aligned_cols=67 Identities=22% Similarity=0.346 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020094 204 PGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN----PS---DGNILSLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 204 P~n~~~l~nLA~~L~~~~gd~ekAee~~erALeld----P~---d~~al~~yA~ll~~~~Gd~deA~~yfekAL~l 272 (331)
|+.+.++.++|.++.. .|++++|+.+|++|+++. ++ -+.++.++|.++.. .|++++|+++|++++++
T Consensus 2 ~~~a~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRE-LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence 3445677888888665 888888888888888651 12 25567777787777 89999999999988876
No 132
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=3.8e-06 Score=84.07 Aligned_cols=122 Identities=12% Similarity=0.062 Sum_probs=106.7
Q ss_pred chHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------------HH
Q 020094 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN------------IL 245 (331)
Q Consensus 178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~------------al 245 (331)
--+.|+-..++++.|...--..+++++.+.+++..-+.+++. ..+.++|+.+|+++|.++|+... +|
T Consensus 174 lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy-~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 174 LKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYY-NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccccccc-ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHH
Confidence 346788888999999999999999999999999988888777 89999999999999999998543 44
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 246 SLYADLIWQAHKDASRAESYFDQAVKSAPDD----CYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 246 ~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d----~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
..-+.-.+. .|++.+|.++|..||.++|++ ...|.+.+.+..++|+..|+..+|+
T Consensus 253 k~~gN~~fk-~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~ 311 (486)
T KOG0550|consen 253 KERGNDAFK-NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCN 311 (486)
T ss_pred HhhhhhHhh-ccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhh
Confidence 445566677 899999999999999999955 4578999999999999999999987
No 133
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.22 E-value=1.4e-05 Score=83.85 Aligned_cols=126 Identities=16% Similarity=0.101 Sum_probs=115.0
Q ss_pred ccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~ 253 (331)
..-+-++.+....++.++|+.+++++|+..|+...+|..+|+++.. .++.+.|.+.|..-++.-|+....|..++.+--
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~-~~~ie~aR~aY~~G~k~cP~~ipLWllLakleE 730 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQ-MENIEMAREAYLQGTKKCPNSIPLWLLLAKLEE 730 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHH-HHHHHHHHHHHHhccccCCCCchHHHHHHHHHH
Confidence 3445677888888999999999999999999999999999999654 999999999999999999999999988887766
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 254 ~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
. .|+.-+|...++++.-.+|++...|.....+..+.|+.++|+..+.
T Consensus 731 k-~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lma 777 (913)
T KOG0495|consen 731 K-DGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMA 777 (913)
T ss_pred H-hcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHH
Confidence 6 8999999999999999999999999999999999999999986554
No 134
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.20 E-value=2e-05 Score=72.90 Aligned_cols=108 Identities=19% Similarity=0.220 Sum_probs=89.5
Q ss_pred HHhCCCcHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020094 183 SNNNHGSSSTDAYYEKMIEANPGNA-----LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (331)
Q Consensus 183 y~s~gd~ekA~e~yerAL~~nP~n~-----~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~G 257 (331)
++..|+|++|..-|+.||..-|..+ ..+.|-|.++. +++..+.|+.-|-+||+++|.+-.++...|.+|-. +.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~i-Kl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek-~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALI-KLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK-ME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHH-HhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh-hh
Confidence 4467999999999999999988753 34556666644 48899999999999999999999999877887777 89
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020094 258 DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGD 292 (331)
Q Consensus 258 d~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~ 292 (331)
.|++|+.-|++.++++|....+...++++--...+
T Consensus 183 k~eealeDyKki~E~dPs~~ear~~i~rl~~~i~e 217 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREAREAIARLPPKINE 217 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHH
Confidence 99999999999999999888877777666554443
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.16 E-value=2e-05 Score=79.27 Aligned_cols=95 Identities=17% Similarity=0.109 Sum_probs=86.1
Q ss_pred CCcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020094 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 171 g~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ 250 (331)
..+-...-+|++|...++..+|+..+.+++..+|.+..++...|.++.. .++++.|++++++|+++.|++...|+.++.
T Consensus 198 ~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~-k~~~~lAL~iAk~av~lsP~~f~~W~~La~ 276 (395)
T PF09295_consen 198 RDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS-KKKYELALEIAKKAVELSPSEFETWYQLAE 276 (395)
T ss_pred cCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 3344566689999999999999999999999999999999999999766 999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHH
Q 020094 251 LIWQAHKDASRAESYFD 267 (331)
Q Consensus 251 ll~~~~Gd~deA~~yfe 267 (331)
+|.. .|++++|+..+.
T Consensus 277 ~Yi~-~~d~e~ALlaLN 292 (395)
T PF09295_consen 277 CYIQ-LGDFENALLALN 292 (395)
T ss_pred HHHh-cCCHHHHHHHHh
Confidence 9998 999999997655
No 136
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.14 E-value=1.6e-05 Score=83.02 Aligned_cols=127 Identities=11% Similarity=-0.032 Sum_probs=113.9
Q ss_pred cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020094 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH 256 (331)
Q Consensus 177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~ 256 (331)
+..+-.+...|+-++|..+.+.++..++...--|..||.+. +...+|++|+++|+.|+.++|+|-.+|..++.+-.+ +
T Consensus 45 AmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~-R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q-m 122 (700)
T KOG1156|consen 45 AMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQ-RSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ-M 122 (700)
T ss_pred HhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHH-hhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-H
Confidence 33445566778999999999999999999999999999884 558999999999999999999999999999888887 9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhhhhc
Q 020094 257 KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEESQH 305 (331)
Q Consensus 257 Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~~~ 305 (331)
++++-....-.+.+++.|.+...|..+|+.+.-.|+...|...+++.-+
T Consensus 123 Rd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~ 171 (700)
T KOG1156|consen 123 RDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEK 171 (700)
T ss_pred HhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887764433
No 137
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.13 E-value=1.8e-05 Score=82.03 Aligned_cols=86 Identities=12% Similarity=0.011 Sum_probs=73.1
Q ss_pred cHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020094 189 SSSTDAYYEKMIEA--NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF 266 (331)
Q Consensus 189 ~ekA~e~yerAL~~--nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yf 266 (331)
.+++.+..++++.+ +|.++.++..+|..... .|++++|..+|++|+.++| +..+|..++.++.. .|++++|+.+|
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~-~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~-~G~~~eA~~~~ 476 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALV-KGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYEL-KGDNRLAADAY 476 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 35666667776664 78888888888877554 8999999999999999999 57888888888888 99999999999
Q ss_pred HHHHHhCCCCH
Q 020094 267 DQAVKSAPDDC 277 (331)
Q Consensus 267 ekAL~ldP~d~ 277 (331)
++|+.++|.++
T Consensus 477 ~~A~~L~P~~p 487 (517)
T PRK10153 477 STAFNLRPGEN 487 (517)
T ss_pred HHHHhcCCCCc
Confidence 99999999665
No 138
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.13 E-value=5.6e-05 Score=72.05 Aligned_cols=103 Identities=13% Similarity=0.103 Sum_probs=93.0
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHH
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS---DGNILSLYA 249 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n---~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~---d~~al~~yA 249 (331)
.+|.|.-+...++|..|+..|+.-|...|+. +++++.||..++. +|+|+.|..+|.++++..|+ -++.++.++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~-qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA-QGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh-cccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 6899999999999999999999999999985 6788999999876 99999999999999999886 458898999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 020094 250 DLIWQAHKDASRAESYFDQAVKSAPDDCYVL 280 (331)
Q Consensus 250 ~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl 280 (331)
.++.. .|+.++|...|++.++.-|....+.
T Consensus 223 ~~~~~-l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 223 VSLGR-LGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHH-hcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 99998 9999999999999999999766543
No 139
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.13 E-value=9.1e-06 Score=88.13 Aligned_cols=125 Identities=16% Similarity=0.049 Sum_probs=106.2
Q ss_pred hHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----------------------------------HcCC
Q 020094 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKE-----------------------------------VRGD 223 (331)
Q Consensus 179 ~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~-----------------------------------~~gd 223 (331)
++++|....+...|..||++|.++|+.+..++...+..+.+ ..++
T Consensus 498 LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n 577 (1238)
T KOG1127|consen 498 LGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHN 577 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccc
Confidence 66788888888999999999999999998876655433211 1346
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhhh
Q 020094 224 FAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEES 303 (331)
Q Consensus 224 ~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~ 303 (331)
+.+|+..|+.|+..+|+|...|..++..|.. .|++.-|++.|.||..++|.+-++.+..+....++|+++++-..++.+
T Consensus 578 ~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~-sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 578 LHGAVCEFQSALRTDPKDYNLWLGLGEAYPE-SGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred hhhHHHHHHHHhcCCchhHHHHHHHHHHHHh-cCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 7789999999999999999999999998888 999999999999999999999999999999999999999997666543
Q ss_pred h
Q 020094 304 Q 304 (331)
Q Consensus 304 ~ 304 (331)
.
T Consensus 657 i 657 (1238)
T KOG1127|consen 657 I 657 (1238)
T ss_pred H
Confidence 3
No 140
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.12 E-value=5.8e-05 Score=75.20 Aligned_cols=127 Identities=19% Similarity=0.139 Sum_probs=109.8
Q ss_pred CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l 251 (331)
++-...-||.-+...++++.|.+..+++++..-+.- +...|+.+ +.+++.+-++..++.++..|+++..+..++.+
T Consensus 262 ~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~l---~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L 337 (400)
T COG3071 262 DPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIPRL---RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRL 337 (400)
T ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHhhc---CCCCchHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 455677789999999999999999999999876655 33333322 47899999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhhhh
Q 020094 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEESQ 304 (331)
Q Consensus 252 l~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~~ 304 (331)
++. .+.+.+|..+|+.|++..| +.+.+..+|.++.++|+.++++...+|.+
T Consensus 338 ~~k-~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 338 ALK-NKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHH-hhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 998 9999999999999999988 66778999999999999999998888655
No 141
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.11 E-value=6.7e-05 Score=68.89 Aligned_cols=125 Identities=18% Similarity=0.117 Sum_probs=109.1
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIE-ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS--DGNILSLYADLI 252 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~-~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~--d~~al~~yA~ll 252 (331)
.+.+|..+-..|++.+|...|++++. +..+++..+..+|++++. .+++..|...+++..+.+|. .++-...++..+
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa-~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l 170 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA-IQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL 170 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh-hccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence 34577888899999999999999987 477899999999999887 99999999999999999986 455566789988
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhhh
Q 020094 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEES 303 (331)
Q Consensus 253 ~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~ 303 (331)
.- .|++++|+..|+.++...| .+.....++..+.+.|+..|+..++.+.
T Consensus 171 aa-~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 171 AA-QGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred Hh-cCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 87 9999999999999999988 6777788999999999999988766543
No 142
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.11 E-value=9.7e-06 Score=82.25 Aligned_cols=70 Identities=16% Similarity=-0.038 Sum_probs=63.4
Q ss_pred CCCCCcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 020094 168 GGGGGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALL---LGNYARFLKEVRGDFAKAEELCGRAILAN 238 (331)
Q Consensus 168 ~~~g~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~---l~nLA~~L~~~~gd~ekAee~~erALeld 238 (331)
.+..+.....|++..|+..++|++|+.+|+++|+++|+++.+ ++|+|.++.. +|++++|+++|++||++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~-LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY-REEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhc
Confidence 344667778999999999999999999999999999999965 9999999776 999999999999999983
No 143
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=2.4e-05 Score=78.60 Aligned_cols=119 Identities=15% Similarity=0.092 Sum_probs=98.7
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 020094 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS 260 (331)
Q Consensus 181 ~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~d 260 (331)
..++..++++.|+.+-+++|+.+|.+..++..-|.++.. .++.++|...|+.|+.+.|-+-++|.-+-..|.- .+.+.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~-~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA-~~~~k 385 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIA-LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLA-QKRFK 385 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHh-ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHh-hchHH
Confidence 345556789999999999999999999999999988765 9999999999999999999999999766665555 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHH-HHHHHcC-CchHHHHhhh
Q 020094 261 RAESYFDQAVKSAPDDCYVLASYA-KFLWDAG-DDEEEEQDNE 301 (331)
Q Consensus 261 eA~~yfekAL~ldP~d~~vl~~LA-~~L~~lG-~~eEa~~~~~ 301 (331)
||......++..-|.++..+.-+| .++.-.- --|.|.+.++
T Consensus 386 EA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e 428 (564)
T KOG1174|consen 386 EANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAE 428 (564)
T ss_pred HHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHH
Confidence 999999999999999999887775 4444322 3455566665
No 144
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.09 E-value=3.4e-05 Score=78.68 Aligned_cols=122 Identities=21% Similarity=0.319 Sum_probs=107.8
Q ss_pred cchHHHHHhC-CCcHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094 177 GSNNNYSNNN-HGSSSTDAYYEKMIEANPG----NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 177 ~N~A~~y~s~-gd~ekA~e~yerAL~~nP~----n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l 251 (331)
-|||-+-.-. .+.+.+.+.|+.+|.+-|+ .+.+|..||.+.-. +.++..|.+++..||-..|.+-... .|..+
T Consensus 369 inYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIR-q~~l~~ARkiLG~AIG~cPK~KlFk-~YIel 446 (677)
T KOG1915|consen 369 INYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIR-QLNLTGARKILGNAIGKCPKDKLFK-GYIEL 446 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHH-HcccHHHHHHHHHHhccCCchhHHH-HHHHH
Confidence 4666444333 6889999999999999997 47789999999655 8999999999999999999998877 78787
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 252 l~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
-.. .+++|+...+|++-|+..|.+|++|..+|.+-..+|+.+.+-..++
T Consensus 447 Elq-L~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaife 495 (677)
T KOG1915|consen 447 ELQ-LREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFE 495 (677)
T ss_pred HHH-HhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 777 9999999999999999999999999999999999999999988877
No 145
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.07 E-value=6.2e-05 Score=78.07 Aligned_cols=124 Identities=20% Similarity=0.125 Sum_probs=104.3
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~ 255 (331)
.+-+|+.|...|++++|+++++++|...|..++++...|.++.. .|++.+|.++++.|..+|+.|-++-...+-.+++
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh-~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR- 274 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH-AGDLKEAAEAMDEARELDLADRYINSKCAKYLLR- 274 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH-
Confidence 45569999999999999999999999999999999999999876 9999999999999999999999988666665665
Q ss_pred cCCHHHHHHHHHHHHHhC--C-CC------HHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 256 HKDASRAESYFDQAVKSA--P-DD------CYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 256 ~Gd~deA~~yfekAL~ld--P-~d------~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
.|++++|+..+..-...+ | .| .......|.+|.+.|++-.|-+-+.
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~ 329 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFH 329 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999887665554 2 22 2234566899999999988876554
No 146
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.07 E-value=0.00024 Score=57.64 Aligned_cols=118 Identities=25% Similarity=0.285 Sum_probs=77.9
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcC
Q 020094 182 YSNNNHGSSSTDAYYEKMIEANP---GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-DGNILSLYADLIWQAHK 257 (331)
Q Consensus 182 ~y~s~gd~ekA~e~yerAL~~nP---~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~-d~~al~~yA~ll~~~~G 257 (331)
++...++++.|..+|++++..+| ........++..+.. .++++.|+..+.+++...+. ...++..++..+.. .+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 216 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEA-LGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK-LG 216 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH-hcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH-cc
Confidence 56677777777777777777666 234444444444333 66777777777777777777 56666666666665 77
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 258 DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 258 d~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
++++|..++.+++...|.....+..++..+...++.+++....+
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALE 260 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHH
Confidence 77777777777777777766666666666665555555554443
No 147
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.07 E-value=6.6e-05 Score=68.05 Aligned_cols=125 Identities=16% Similarity=0.173 Sum_probs=93.4
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHH
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG---NILSLYA 249 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n---~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~---~al~~yA 249 (331)
.+..|..+...|++.+|+..|++++...|.. +.+.+.+|.+++. .+++.+|+..|++.++..|+++ .+++..+
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~-~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK-QGDYEEAIAAYERFIKLYPNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 3467888899999999999999999998875 5678888988776 9999999999999999999865 5676777
Q ss_pred HHHHHH----------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCchHHHHhhh
Q 020094 250 DLIWQA----------HKDASRAESYFDQAVKSAPDDCYVL-----------------ASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 250 ~ll~~~----------~Gd~deA~~yfekAL~ldP~d~~vl-----------------~~LA~~L~~lG~~eEa~~~~~ 301 (331)
...+.. .....+|+..|++.++.-|++.++- +.+|.+|.+.+.+.-|..-++
T Consensus 87 ~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~ 165 (203)
T PF13525_consen 87 LSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQ 165 (203)
T ss_dssp HHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHH
T ss_pred HHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 766542 2234689999999999999876542 445777888887777765554
No 148
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.05 E-value=7.7e-05 Score=78.47 Aligned_cols=112 Identities=22% Similarity=0.195 Sum_probs=57.4
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020094 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF 266 (331)
Q Consensus 187 gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yf 266 (331)
|-.+.-+.++++++..-|.-..+|..||.-.+. .||...|.-++.+|++.+|++-.+|+..-.+..+ ..++++|..+|
T Consensus 564 gt~Esl~Allqkav~~~pkae~lwlM~ake~w~-agdv~~ar~il~~af~~~pnseeiwlaavKle~e-n~e~eraR~ll 641 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQCPKAEILWLMYAKEKWK-AGDVPAARVILDQAFEANPNSEEIWLAAVKLEFE-NDELERARDLL 641 (913)
T ss_pred CcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHh-cCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhc-cccHHHHHHHH
Confidence 344444444444444444444445555544443 4555555555555555555555555333333333 44555555555
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 267 DQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 267 ekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
.+|....| ...+|+..+.+.+.+++.+||...||
T Consensus 642 akar~~sg-TeRv~mKs~~~er~ld~~eeA~rllE 675 (913)
T KOG0495|consen 642 AKARSISG-TERVWMKSANLERYLDNVEEALRLLE 675 (913)
T ss_pred HHHhccCC-cchhhHHHhHHHHHhhhHHHHHHHHH
Confidence 55555444 34455555666666666666665555
No 149
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.03 E-value=0.0001 Score=64.44 Aligned_cols=104 Identities=15% Similarity=0.118 Sum_probs=84.7
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHH
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG---NILSLYA 249 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n---~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~---~al~~yA 249 (331)
.++-|.-....++|++|++.|+.+....|.. ..+...++.+++. .+++++|+..+++-|+++|+++ .+++..|
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~-~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK-QGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 4556777788899999999999999998865 4567778888776 9999999999999999999865 5666677
Q ss_pred HHHHHHcCC---------------HHHHHHHHHHHHHhCCCCHHHHH
Q 020094 250 DLIWQAHKD---------------ASRAESYFDQAVKSAPDDCYVLA 281 (331)
Q Consensus 250 ~ll~~~~Gd---------------~deA~~yfekAL~ldP~d~~vl~ 281 (331)
...+. +.. ..+|...|++.|..-|++.++-.
T Consensus 92 L~~~~-~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 92 LSYYE-QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred HHHHH-HhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 77776 554 77999999999999998876643
No 150
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.02 E-value=8.7e-06 Score=61.80 Aligned_cols=61 Identities=20% Similarity=0.175 Sum_probs=51.0
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHh---CC----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEA---NP----GNALLLGNYARFLKEVRGDFAKAEELCGRAILA 237 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~---nP----~n~~~l~nLA~~L~~~~gd~ekAee~~erALel 237 (331)
..|+|.+|...+++++|+.+|++++.+ .+ ....++.++|.++.. .|++++|++++++|+++
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence 468999999999999999999999976 22 235567889988665 99999999999999986
No 151
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.01 E-value=0.00029 Score=57.15 Aligned_cols=125 Identities=21% Similarity=0.148 Sum_probs=98.3
Q ss_pred cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHH
Q 020094 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYAR-FLKEVRGDFAKAEELCGRAILANP---SDGNILSLYAD 250 (331)
Q Consensus 175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~-~L~~~~gd~ekAee~~erALeldP---~d~~al~~yA~ 250 (331)
...+.+.++...+++..+...+.+++..++.+......+.. ++. ..+++++|..+|.+++..+| .....+..+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (291)
T COG0457 97 ALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALY-ELGDYEEALELYEKALELDPELNELAEALLALGA 175 (291)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhh
Confidence 35566778888888999999999999988887555554454 444 48999999999999988887 34444544555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 251 LIWQAHKDASRAESYFDQAVKSAPD-DCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 251 ll~~~~Gd~deA~~yfekAL~ldP~-d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
.+.. .+++++|+..+.+++...+. ....+..++..+...++.+++...+.
T Consensus 176 ~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 226 (291)
T COG0457 176 LLEA-LGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYE 226 (291)
T ss_pred HHHH-hcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHH
Confidence 5455 88999999999999999998 68999999999999998888876665
No 152
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.96 E-value=0.00014 Score=71.31 Aligned_cols=118 Identities=13% Similarity=0.095 Sum_probs=91.7
Q ss_pred ccchHHHHH-------hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHH
Q 020094 176 SGSNNNYSN-------NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG-NILSL 247 (331)
Q Consensus 176 ~~N~A~~y~-------s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~-~al~~ 247 (331)
..++|.||. ...++++|+..+.+|++.||++..+-..+|.+... .|+|++|++.++++++.||+.. .++-.
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~-~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELA-KGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHh-ccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 345666665 45688999999999999999999999999999655 9999999999999999999754 56655
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHH
Q 020094 248 YADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEE 296 (331)
Q Consensus 248 yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa 296 (331)
+..+|.. .|+.++.+..+.++++..+..... ..++.......-.++|
T Consensus 255 L~~~Y~~-lg~~~~~~~fL~~~~~~~~g~~~~-l~l~~lie~~~G~~~A 301 (389)
T COG2956 255 LYECYAQ-LGKPAEGLNFLRRAMETNTGADAE-LMLADLIELQEGIDAA 301 (389)
T ss_pred HHHHHHH-hCCHHHHHHHHHHHHHccCCccHH-HHHHHHHHHhhChHHH
Confidence 6555555 999999999999999998855444 3444444433333334
No 153
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=2.1e-05 Score=74.22 Aligned_cols=86 Identities=20% Similarity=0.155 Sum_probs=79.3
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 020094 185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAES 264 (331)
Q Consensus 185 s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~ 264 (331)
....|..|+.+|.++|.+||..+..+.|-|..+.. .++++.+++-+++|++++||-.-..+.++..+.+ ...|++|+.
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk-~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~-s~~~~eaI~ 99 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLK-LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ-SKGYDEAIK 99 (284)
T ss_pred chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH-hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh-hccccHHHH
Confidence 34789999999999999999999999999988655 8999999999999999999999999989888888 999999999
Q ss_pred HHHHHHHh
Q 020094 265 YFDQAVKS 272 (331)
Q Consensus 265 yfekAL~l 272 (331)
.+.+|+.+
T Consensus 100 ~Lqra~sl 107 (284)
T KOG4642|consen 100 VLQRAYSL 107 (284)
T ss_pred HHHHHHHH
Confidence 99999766
No 154
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.96 E-value=4.4e-05 Score=71.53 Aligned_cols=96 Identities=10% Similarity=0.106 Sum_probs=87.9
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 020094 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS 260 (331)
Q Consensus 181 ~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~d 260 (331)
.+|.+.|=..-|..-|.+++.++|+-|++++.+|.++.. .++|+.|.+.|...+++||.+-++..+.+..+|. -|++.
T Consensus 73 vlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~-a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY-~gR~~ 150 (297)
T COG4785 73 VLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRYK 150 (297)
T ss_pred chhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHh-cccchHHHHHhhhHhccCCcchHHHhccceeeee-cCchH
Confidence 356666777889999999999999999999999988766 9999999999999999999999999999999998 99999
Q ss_pred HHHHHHHHHHHhCCCCHH
Q 020094 261 RAESYFDQAVKSAPDDCY 278 (331)
Q Consensus 261 eA~~yfekAL~ldP~d~~ 278 (331)
.|..-+.+-.+.||+|++
T Consensus 151 LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 151 LAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred hhHHHHHHHHhcCCCChH
Confidence 999999999999999984
No 155
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.94 E-value=2.1e-05 Score=54.37 Aligned_cols=39 Identities=26% Similarity=0.262 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020094 209 LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY 248 (331)
Q Consensus 209 ~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~y 248 (331)
++..||.++.. .|++++|+++|+++|+.+|+|+.+|..+
T Consensus 3 ~~~~la~~~~~-~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRR-LGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 34444444333 5555555555555555555555555443
No 156
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.93 E-value=2.3e-05 Score=54.19 Aligned_cols=43 Identities=19% Similarity=0.141 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020094 242 GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAK 285 (331)
Q Consensus 242 ~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~ 285 (331)
|.+|..++.++.. .|++++|+++|+++++.+|+|..+|..++.
T Consensus 1 p~~~~~la~~~~~-~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRR-LGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3577889999998 999999999999999999999999999875
No 157
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.92 E-value=1e-05 Score=53.60 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=17.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 020094 231 CGRAILANPSDGNILSLYADLIWQAHKDASRAE 263 (331)
Q Consensus 231 ~erALeldP~d~~al~~yA~ll~~~~Gd~deA~ 263 (331)
|++||+++|+|+.+|++||.++.. .|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~-~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLN-QGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHH-CcCHHhhc
Confidence 455555555555555555555554 55555553
No 158
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.91 E-value=0.00024 Score=73.82 Aligned_cols=127 Identities=22% Similarity=0.266 Sum_probs=99.6
Q ss_pred cccccchHHHHHhCCCcHHHHHHHHHHHHh---------------CCCCHHHH--HHHHHHHHHHcCCHHHHHHHHHHHH
Q 020094 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEA---------------NPGNALLL--GNYARFLKEVRGDFAKAEELCGRAI 235 (331)
Q Consensus 173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~---------------nP~n~~~l--~nLA~~L~~~~gd~ekAee~~erAL 235 (331)
+-...|+-.+|....+..-...++...+.. .|....+| +.+|+.+.. .|++++|++++++||
T Consensus 143 PslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~-~g~~~~Al~~Id~aI 221 (517)
T PF12569_consen 143 PSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY-LGDYEKALEYIDKAI 221 (517)
T ss_pred chHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHH
Confidence 345567777777554444444444443321 11222233 555777554 999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 236 LANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 236 eldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
+..|..++.+...|.++-. .|++.+|..+++.|-.+|+.|-++-...+..+.+.|+.++|++.+.
T Consensus 222 ~htPt~~ely~~KarilKh-~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 222 EHTPTLVELYMTKARILKH-AGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTAS 286 (517)
T ss_pred hcCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999998888 9999999999999999999999999999999999999999998775
No 159
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.91 E-value=0.00013 Score=81.62 Aligned_cols=122 Identities=20% Similarity=0.231 Sum_probs=113.0
Q ss_pred chHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHH
Q 020094 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS--DGNILSLYADLIWQA 255 (331)
Q Consensus 178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~--d~~al~~yA~ll~~~ 255 (331)
-+..+|...+.+++|.++|+++++.......+|..||.++.. +++.++|...+.||++.-|. +..+....|.+.|.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~-~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk- 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR-QNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK- 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc-ccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh-
Confidence 356788899999999999999999999999999999999876 88889999999999999998 88888889999998
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 256 ~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
.|+.+++...|+-.+...|.-.++|.-|...-.+.++.+-....+|
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfe 1658 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFE 1658 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999888888776
No 160
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.87 E-value=7.2e-05 Score=72.07 Aligned_cols=105 Identities=20% Similarity=0.188 Sum_probs=85.6
Q ss_pred ccccchHHHHHh--C--CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020094 174 GFSGSNNNYSNN--N--HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYA 249 (331)
Q Consensus 174 ~~~~N~A~~y~s--~--gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA 249 (331)
-...++|..|.. . ..+.+|..+|+++....+.++.+++.+|.+... +|+|++|++.+.+|+..+|+|++++.+++
T Consensus 164 ~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~-~~~~~eAe~~L~~al~~~~~~~d~LaNli 242 (290)
T PF04733_consen 164 SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ-LGHYEEAEELLEEALEKDPNDPDTLANLI 242 (290)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH-CT-HHHHHHHHHHHCCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 346677765544 2 368999999999888888999999999988655 99999999999999999999999999998
Q ss_pred HHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHH
Q 020094 250 DLIWQAHKDA-SRAESYFDQAVKSAPDDCYVL 280 (331)
Q Consensus 250 ~ll~~~~Gd~-deA~~yfekAL~ldP~d~~vl 280 (331)
.+... .|+. +.+.+++.++...+|+++.+-
T Consensus 243 v~~~~-~gk~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 243 VCSLH-LGKPTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp HHHHH-TT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred HHHHH-hCCChhHHHHHHHHHHHhCCCChHHH
Confidence 88887 8877 778899999999999988764
No 161
>PLN03077 Protein ECB2; Provisional
Probab=97.86 E-value=0.00018 Score=77.87 Aligned_cols=119 Identities=13% Similarity=0.103 Sum_probs=92.1
Q ss_pred hHHHHHhCCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020094 179 NNNYSNNNHGSSSTDAYYEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH 256 (331)
Q Consensus 179 ~A~~y~s~gd~ekA~e~yerAL~~nP~--n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~ 256 (331)
+-..|...|..++|..+|+++....+- +...+..+..++.+ .|++++|++++++. ...| |+.+|..+...+.. .
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r-~G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~-~ 670 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR-AGKLTEAYNFINKM-PITP-DPAVWGALLNACRI-H 670 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh-CCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHH-c
Confidence 334566677788888888887755433 33456666677655 88888888888775 3556 46677777776666 8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 257 KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 257 Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
++.+.|+...+++++++|++...+..++.+|...|+++++.+..+
T Consensus 671 ~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~ 715 (857)
T PLN03077 671 RHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRK 715 (857)
T ss_pred CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHH
Confidence 999999999999999999999999999999999999999986554
No 162
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.84 E-value=0.00048 Score=77.03 Aligned_cols=119 Identities=16% Similarity=0.091 Sum_probs=64.9
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHc
Q 020094 180 NNYSNNNHGSSSTDAYYEKMIEAN-PGNALLLGNYARFLKEVRGDFAKAEELCGRAILA--NPSDGNILSLYADLIWQAH 256 (331)
Q Consensus 180 A~~y~s~gd~ekA~e~yerAL~~n-P~n~~~l~nLA~~L~~~~gd~ekAee~~erALel--dP~d~~al~~yA~ll~~~~ 256 (331)
-..|.+.|++++|+++|+++.+.+ +.+...+..+...+.. .|++++|+++|++..+. .| |...|..+...+.. .
T Consensus 586 I~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k-~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k-~ 662 (1060)
T PLN03218 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ-KGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGH-A 662 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHh-C
Confidence 334555555555555555555554 2344444444444333 55566666666555554 23 23444444444444 6
Q ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 257 KDASRAESYFDQAVKSAP-DDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 257 Gd~deA~~yfekAL~ldP-~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
|++++|+.+|+++.+..- .+..+|..+...|.+.|+.++|.+.++
T Consensus 663 G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~ 708 (1060)
T PLN03218 663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE 708 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 666666666666665432 355566666666666666666665555
No 163
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.82 E-value=0.00092 Score=62.76 Aligned_cols=125 Identities=11% Similarity=0.010 Sum_probs=96.7
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH--------------cCC---HHHHHHHHHHHH
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL---LLGNYARFLKEV--------------RGD---FAKAEELCGRAI 235 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~---~l~nLA~~L~~~--------------~gd---~ekAee~~erAL 235 (331)
..++|..|++.+++++|+.+|++.++.+|+++. +++.+|...... ..| ..+|+..|++.|
T Consensus 72 ~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li 151 (243)
T PRK10866 72 QLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV 151 (243)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH
Confidence 368899999999999999999999999998754 456666442110 012 357889999999
Q ss_pred HhCCCCHHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCchH
Q 020094 236 LANPSDGNILS-----------------LYADLIWQAHKDASRAESYFDQAVKSAPDD---CYVLASYAKFLWDAGDDEE 295 (331)
Q Consensus 236 eldP~d~~al~-----------------~yA~ll~~~~Gd~deA~~yfekAL~ldP~d---~~vl~~LA~~L~~lG~~eE 295 (331)
+..|+...+-. ..+.++++ .|.+.-|+.-++.+++.-|+. .+++..+..+|.++|..++
T Consensus 152 ~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~-~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~ 230 (243)
T PRK10866 152 RGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTK-RGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQ 230 (243)
T ss_pred HHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHH
Confidence 99998553321 13455666 899999999999999998844 5788899999999999999
Q ss_pred HHHhhh
Q 020094 296 EEQDNE 301 (331)
Q Consensus 296 a~~~~~ 301 (331)
+.+..+
T Consensus 231 a~~~~~ 236 (243)
T PRK10866 231 ADKVAK 236 (243)
T ss_pred HHHHHH
Confidence 986543
No 164
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.82 E-value=0.00016 Score=76.71 Aligned_cols=121 Identities=12% Similarity=0.080 Sum_probs=83.9
Q ss_pred chHHHHHhCCCcHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC-------------
Q 020094 178 SNNNYSNNNHGSSSTDAYYEKMIEAN--PGNALLLGNYARFLKEVRGDFAKAEELCGRAILA---NP------------- 239 (331)
Q Consensus 178 N~A~~y~s~gd~ekA~e~yerAL~~n--P~n~~~l~nLA~~L~~~~gd~ekAee~~erALel---dP------------- 239 (331)
.+...|.+.|+.++|+++|+++++.. |+ ...+..+..++.. .|+.++|.++|+...+. .|
T Consensus 396 ~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~-~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 396 ALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRY-SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhc-CCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 46677778888888888888877642 33 2223333333222 45555555555544432 11
Q ss_pred ------------------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 240 ------------------SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 240 ------------------~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
-+..+|..+...+.. .|+++.|+..++++++++|++...|..+..+|.+.|++++|.+..+
T Consensus 474 r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~-~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~ 552 (697)
T PLN03081 474 REGLLDEAYAMIRRAPFKPTVNMWAALLTACRI-HKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVE 552 (697)
T ss_pred hcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHH
Confidence 145567667676766 8899999999999999999988889999999999999999988776
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.81 E-value=8.1e-05 Score=70.72 Aligned_cols=127 Identities=20% Similarity=0.171 Sum_probs=90.8
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C----CHH
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANP--GN----ALLLGNYARFLKEVRGDFAKAEELCGRAILANP--S----DGN 243 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP--~n----~~~l~nLA~~L~~~~gd~ekAee~~erALeldP--~----d~~ 243 (331)
..-.|..|...+++++|.++|.++....- ++ ...+...+.++ . ..++++|+++|++|+.+.- + -+.
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k-~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~ 115 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-K-KGDPDEAIECYEKAIEIYREAGRFSQAAK 115 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-H-HTTHHHHHHHHHHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-H-hhCHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 44567788889999999999999987642 22 22334444453 3 4599999999999998732 2 245
Q ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCchHHHHhhhhhhc
Q 020094 244 ILSLYADLIWQAH-KDASRAESYFDQAVKSAP--DD----CYVLASYAKFLWDAGDDEEEEQDNEESQH 305 (331)
Q Consensus 244 al~~yA~ll~~~~-Gd~deA~~yfekAL~ldP--~d----~~vl~~LA~~L~~lG~~eEa~~~~~~~~~ 305 (331)
++..+|.++.. . +++++|+.+|++|+++-- +. ..++..++.++..++++++|.+.+++...
T Consensus 116 ~~~~lA~~ye~-~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 116 CLKELAEIYEE-QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHCC-TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66667776666 6 899999999999999833 11 35778999999999999999998874433
No 166
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.79 E-value=0.00011 Score=72.71 Aligned_cols=99 Identities=16% Similarity=0.100 Sum_probs=88.3
Q ss_pred cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020094 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH 256 (331)
Q Consensus 177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~ 256 (331)
..++.-+...+++..|+..|-.|++.||++-.+++.-|..+ +..|+-.-|+.-+.+.|++.|++.-+....+.+++. +
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~y-LAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK-~ 119 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVY-LAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK-Q 119 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHH-hhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh-c
Confidence 34566677789999999999999999999999999999884 448999999999999999999999999899999888 9
Q ss_pred CCHHHHHHHHHHHHHhCCCCH
Q 020094 257 KDASRAESYFDQAVKSAPDDC 277 (331)
Q Consensus 257 Gd~deA~~yfekAL~ldP~d~ 277 (331)
|++++|+.-|++.|+.+|.+.
T Consensus 120 Gele~A~~DF~~vl~~~~s~~ 140 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNG 140 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcc
Confidence 999999999999999999544
No 167
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.78 E-value=0.00018 Score=78.37 Aligned_cols=106 Identities=16% Similarity=0.088 Sum_probs=86.0
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cC
Q 020094 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA---HK 257 (331)
Q Consensus 181 ~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~---~G 257 (331)
+-...+++|+.|++..+++++.||+|-.++.-+|.+++...++.++|.+.|..|++++|++.-+|--++. +|+. .-
T Consensus 10 k~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~n-Lye~~~dIl 88 (1238)
T KOG1127|consen 10 KDALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGN-LYERYNDIL 88 (1238)
T ss_pred HHHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHH-HHHccchhh
Confidence 3345678999999999999999999999999999999985566999999999999999999999955544 5542 35
Q ss_pred CHHHHHHHHHHHHHhCCCCH-HHHHHHHHHH
Q 020094 258 DASRAESYFDQAVKSAPDDC-YVLASYAKFL 287 (331)
Q Consensus 258 d~deA~~yfekAL~ldP~d~-~vl~~LA~~L 287 (331)
+++++-.+|.+++.+.+++. .-+..+...+
T Consensus 89 ~ld~~~~~yq~~~l~le~q~~nk~~~lcKk~ 119 (1238)
T KOG1127|consen 89 DLDRAAKCYQRAVLILENQSKNKGEALCKKF 119 (1238)
T ss_pred hhhHhHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 68999999999999988544 3333333333
No 168
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.77 E-value=0.00022 Score=73.23 Aligned_cols=120 Identities=15% Similarity=0.021 Sum_probs=95.4
Q ss_pred chHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------
Q 020094 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS----------------- 240 (331)
Q Consensus 178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~----------------- 240 (331)
.+-.-..+..+..+.+++-++||+++|+.+.++..||.= ......+|+++|++|++....
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE---eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~ 249 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE---EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA 249 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc---cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence 333444556788899999999999999999999877632 134467788888887765321
Q ss_pred --------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 241 --------DGNILSLYADLIWQAHKDASRAESYFDQAVKSAP--DDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 241 --------d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP--~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
...+...+|.++++ .|+.+||++.|+..++..| ++..++++|..+|...+.+.|+++.+.
T Consensus 250 ~~~Rdt~~~~y~KrRLAmCark-lGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 250 WHRRDTNVLVYAKRRLAMCARK-LGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hhccccchhhhhHHHHHHHHHH-hCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 14566778999998 9999999999999999888 456799999999999999999987775
No 169
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.76 E-value=0.00065 Score=59.39 Aligned_cols=88 Identities=15% Similarity=0.103 Sum_probs=71.9
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCCHH
Q 020094 185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD----GNILSLYADLIWQAHKDAS 260 (331)
Q Consensus 185 s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d----~~al~~yA~ll~~~~Gd~d 260 (331)
..++.+.|++.|.++|.+-|.++.+++|-|+++.. +++.++|+.-+.+|+++.-.. +.++...+.++.. .|+.+
T Consensus 55 E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL-q~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl-~g~dd 132 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCLAPERASAYNNRAQALRL-QGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL-LGNDD 132 (175)
T ss_pred hccchHHHHHHHHHHHHhcccchHhhccHHHHHHH-cCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH-hCchH
Confidence 44688999999999999999999999999999655 999999999999999987543 3455556665555 99999
Q ss_pred HHHHHHHHHHHhCC
Q 020094 261 RAESYFDQAVKSAP 274 (331)
Q Consensus 261 eA~~yfekAL~ldP 274 (331)
.|..-|+.|-++..
T Consensus 133 ~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 133 AARADFEAAAQLGS 146 (175)
T ss_pred HHHHhHHHHHHhCC
Confidence 99999988877644
No 170
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.76 E-value=0.0007 Score=61.35 Aligned_cols=121 Identities=17% Similarity=0.101 Sum_probs=90.6
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHhCCCCH
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA---LLLGNYARFLKEV----------RGDFAKAEELCGRAILANPSDG 242 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~---~~l~nLA~~L~~~----------~gd~ekAee~~erALeldP~d~ 242 (331)
...+|..++..++++.|+..|++.+...|+++ .+++.+|...+.. .....+|...|+..|...|+..
T Consensus 45 ~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~ 124 (203)
T PF13525_consen 45 QLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE 124 (203)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch
Confidence 34688999999999999999999999999875 4566666554332 1224689999999999999966
Q ss_pred HHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCchHHH
Q 020094 243 NILS-----------------LYADLIWQAHKDASRAESYFDQAVKSAPDDC---YVLASYAKFLWDAGDDEEEE 297 (331)
Q Consensus 243 ~al~-----------------~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~---~vl~~LA~~L~~lG~~eEa~ 297 (331)
.+-. ..|.+++. .|.+..|+..|+.+++.-|+.. +++..++..+.++|..+.++
T Consensus 125 y~~~A~~~l~~l~~~la~~e~~ia~~Y~~-~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 125 YAEEAKKRLAELRNRLAEHELYIARFYYK-RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHC-TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 4421 14566666 8999999999999999999665 57888899999999988554
No 171
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.76 E-value=0.00021 Score=68.13 Aligned_cols=90 Identities=24% Similarity=0.238 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHH
Q 020094 210 LGNYARFLKEVRGDFAKAEELCGRAILANPSDG---NILSLYADLIWQAHKDASRAESYFDQAVKSAP---DDCYVLASY 283 (331)
Q Consensus 210 l~nLA~~L~~~~gd~ekAee~~erALeldP~d~---~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP---~d~~vl~~L 283 (331)
+++.|.-+++ .|||..|++-|..-|+..|+.. .+++-|+.++|. +|+|++|..+|.++++-.| .-++.++.+
T Consensus 144 ~Y~~A~~~~k-sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~-qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLYK-SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA-QGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh-cccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 4445545455 8999999999999999999832 334449999998 9999999999999999988 446899999
Q ss_pred HHHHHHcCCchHHHHhhh
Q 020094 284 AKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 284 A~~L~~lG~~eEa~~~~~ 301 (331)
|.++.++++.++|-.-++
T Consensus 222 g~~~~~l~~~d~A~atl~ 239 (262)
T COG1729 222 GVSLGRLGNTDEACATLQ 239 (262)
T ss_pred HHHHHHhcCHHHHHHHHH
Confidence 999999999999987776
No 172
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.75 E-value=3e-05 Score=51.37 Aligned_cols=34 Identities=38% Similarity=0.568 Sum_probs=31.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 020094 195 YYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEE 229 (331)
Q Consensus 195 ~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee 229 (331)
+|+++|+++|+|+.++++||.++.. .|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~-~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLN-QGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHH-CcCHHhhcC
Confidence 4899999999999999999999876 999999864
No 173
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.71 E-value=4.6e-05 Score=77.46 Aligned_cols=114 Identities=17% Similarity=0.080 Sum_probs=99.5
Q ss_pred cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020094 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH 256 (331)
Q Consensus 177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~ 256 (331)
.|-|.-++..+.|+.|+..|.+||+++|+++.++.+-+.+ ..+.++|..|+.-+.+||+++|....+++..|..+.. .
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a-~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~-l 85 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALA-HLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA-L 85 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhh-heeechhhhHHHHHHhhhhcCchhhheeeeccHHHHh-H
Confidence 3455666677899999999999999999999999888866 4459999999999999999999999999888888887 9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020094 257 KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGD 292 (331)
Q Consensus 257 Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~ 292 (331)
+++.+|+..|++...+.|++.++...+..+-...-+
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSE 121 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888776654443
No 174
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.71 E-value=5.2e-05 Score=74.98 Aligned_cols=86 Identities=16% Similarity=0.101 Sum_probs=79.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 020094 214 ARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDD 293 (331)
Q Consensus 214 A~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~ 293 (331)
|.-++. +|.|++|+.||.++|.++|.|+..+.+.|..|+. ++.|..|+.-...|+++|-...-+|...+.+-..+|+.
T Consensus 104 GN~yFK-QgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk-~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFK-QGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLK-QKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhh-ccchhHHHHHhhhhhccCCCCccchhhHHHHHHH-HHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 445455 9999999999999999999999999999999998 99999999999999999988888899999999999999
Q ss_pred hHHHHhhh
Q 020094 294 EEEEQDNE 301 (331)
Q Consensus 294 eEa~~~~~ 301 (331)
+||.++||
T Consensus 182 ~EAKkD~E 189 (536)
T KOG4648|consen 182 MEAKKDCE 189 (536)
T ss_pred HHHHHhHH
Confidence 99999887
No 175
>PLN03077 Protein ECB2; Provisional
Probab=97.68 E-value=0.00062 Score=73.79 Aligned_cols=117 Identities=12% Similarity=0.013 Sum_probs=95.1
Q ss_pred chHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHH
Q 020094 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA--NPSDGNILSLYADLIWQA 255 (331)
Q Consensus 178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALel--dP~d~~al~~yA~ll~~~ 255 (331)
.+-+.|.+.|++++|...|+++ +.|...|+.+...+.. .|+.++|+++|++.++. .|+...+. .+...+..
T Consensus 529 aLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~-~G~~~~A~~lf~~M~~~g~~Pd~~T~~-~ll~a~~~- 601 (857)
T PLN03077 529 ALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVA-HGKGSMAVELFNRMVESGVNPDEVTFI-SLLCACSR- 601 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCcccHH-HHHHHHhh-
Confidence 3557888999999999999886 5577788888877665 99999999999998874 56655544 45555666
Q ss_pred cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 256 HKDASRAESYFDQAVKSAP--DDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 256 ~Gd~deA~~yfekAL~ldP--~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
.|++++|..+|+...+..+ -+...|..+..+|.+.|+.+||.+.++
T Consensus 602 ~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~ 649 (857)
T PLN03077 602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN 649 (857)
T ss_pred cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 8999999999999985433 366889999999999999999999887
No 176
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.67 E-value=0.00074 Score=71.59 Aligned_cols=120 Identities=9% Similarity=-0.009 Sum_probs=87.9
Q ss_pred cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHH
Q 020094 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP-SDGNILSLYADLIWQA 255 (331)
Q Consensus 177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP-~d~~al~~yA~ll~~~ 255 (331)
.-+...|.+.|++++|..+|+++. +.|...|+.+...+.. .|++++|+++|++..+..- -|...+..+...+..
T Consensus 263 n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~-~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~- 337 (697)
T PLN03081 263 CALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYAL-HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR- 337 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-
Confidence 345677888888888888888763 3466677777777555 8888888888888876432 144555566666666
Q ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 256 HKDASRAESYFDQAVKSA-PDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 256 ~Gd~deA~~yfekAL~ld-P~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
.|++++|...+..+++.. +.|..++..+...|.+.|+.++|.+.++
T Consensus 338 ~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~ 384 (697)
T PLN03081 338 LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD 384 (697)
T ss_pred ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHH
Confidence 888888888888888776 3567777788888888888888877776
No 177
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.67 E-value=0.0014 Score=73.49 Aligned_cols=122 Identities=11% Similarity=0.049 Sum_probs=84.8
Q ss_pred cchHHHHHhCCCcHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Q 020094 177 GSNNNYSNNNHGSSSTDAYYEKMIEA--NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP-SDGNILSLYADLIW 253 (331)
Q Consensus 177 ~N~A~~y~s~gd~ekA~e~yerAL~~--nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP-~d~~al~~yA~ll~ 253 (331)
..+...|.+.|++++|+.+|+++.+. .|+ ...+..+...+.. .|++++|.++++++++... -|..++..+...+.
T Consensus 618 nsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k-~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~ 695 (1060)
T PLN03218 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGH-AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695 (1060)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34555677788888888888888776 343 4455556666554 7888888888888877653 35666666666666
Q ss_pred HHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 254 QAHKDASRAESYFDQAVKSAP-DDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 254 ~~~Gd~deA~~yfekAL~ldP-~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
. .|++++|+.+|++..+... .+...|..+...|.+.|+.++|.+.++
T Consensus 696 k-~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~ 743 (1060)
T PLN03218 696 N-AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLS 743 (1060)
T ss_pred h-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6 7888888888877765422 356677777777778888777776665
No 178
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00049 Score=65.57 Aligned_cols=94 Identities=16% Similarity=0.210 Sum_probs=78.3
Q ss_pred hCCCcHHHHHHHHHHHHh--------CCCCHHH----------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020094 185 NNHGSSSTDAYYEKMIEA--------NPGNALL----------LGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILS 246 (331)
Q Consensus 185 s~gd~ekA~e~yerAL~~--------nP~n~~~----------l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~ 246 (331)
..++|.+|...|+.||.. .|..++. +.||++++. ..++|-++++.+...+..+|.|..+++
T Consensus 190 k~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L-~~~e~yevleh~seiL~~~~~nvKA~f 268 (329)
T KOG0545|consen 190 KLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLL-KKEEYYEVLEHCSEILRHHPGNVKAYF 268 (329)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHh-hHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 448999999999888763 5666553 678888854 489999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 020094 247 LYADLIWQAHKDASRAESYFDQAVKSAPDDCYVL 280 (331)
Q Consensus 247 ~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl 280 (331)
..|..... .=+.++|..-|.++++++|.-..+.
T Consensus 269 rRakAhaa-~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 269 RRAKAHAA-VWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred HHHHHHHh-hcCHHHHHHHHHHHHhcChhhHHHH
Confidence 98888776 7778999999999999999555443
No 179
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.63 E-value=0.0003 Score=66.82 Aligned_cols=123 Identities=21% Similarity=0.188 Sum_probs=90.3
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC--CC----H
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEAN--PGN----ALLLGNYARFLKEVR-GDFAKAEELCGRAILANP--SD----G 242 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~n--P~n----~~~l~nLA~~L~~~~-gd~ekAee~~erALeldP--~d----~ 242 (331)
..+.+.+|... +.++|+.+|++++.+. -++ +..+..+|.++.. . +++++|+++|++|+++-- +. .
T Consensus 78 ~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~-~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~ 155 (282)
T PF14938_consen 78 YEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEE-QLGDYEKAIEYYQKAAELYEQEGSPHSAA 155 (282)
T ss_dssp HHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC-TT--HHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHCCChhhHH
Confidence 45677788777 9999999999999973 222 4456788888554 6 899999999999998732 11 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CH---HHHHHHHHHHHHcCCchHHHHhhh
Q 020094 243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPD----DC---YVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 243 ~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~----d~---~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
.++..++.++.. .++|++|+..|++.....-+ .. ..++..+.++...|+.-.|.+.++
T Consensus 156 ~~~~~~A~l~~~-l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~ 220 (282)
T PF14938_consen 156 ECLLKAADLYAR-LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALE 220 (282)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556678888887 99999999999999886331 11 356788889999999888887776
No 180
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.59 E-value=0.0007 Score=69.36 Aligned_cols=113 Identities=21% Similarity=0.166 Sum_probs=94.2
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCCHHHH
Q 020094 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD----GNILSLYADLIWQAHKDASRA 262 (331)
Q Consensus 187 gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d----~~al~~yA~ll~~~~Gd~deA 262 (331)
.+.+.|.++++.+.+..|+.+.+++.-|.++.. .|+.++|+++|++++...... ..+++.+++.+.. +.++++|
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~-~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~-~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERL-KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF-QHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH-HchHHHH
Confidence 466999999999999999999999999999655 999999999999999644432 3444567887777 9999999
Q ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCc-------hHHHHhhh
Q 020094 263 ESYFDQAVKSAP-DDCYVLASYAKFLWDAGDD-------EEEEQDNE 301 (331)
Q Consensus 263 ~~yfekAL~ldP-~d~~vl~~LA~~L~~lG~~-------eEa~~~~~ 301 (331)
..+|.+.++.+. ..+...|..|.++..+++. +++.+.++
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~ 371 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFR 371 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHH
Confidence 999999999888 4566778889999999999 66666555
No 181
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.57 E-value=0.0006 Score=59.62 Aligned_cols=87 Identities=25% Similarity=0.308 Sum_probs=78.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHH
Q 020094 213 YARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD----CYVLASYAKFLW 288 (331)
Q Consensus 213 LA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d----~~vl~~LA~~L~ 288 (331)
-|.++.+ .|+++.|++.|.+||.+-|.++-+|++.+..+.. +|+.++|+.-+.+|+++.... |..+...+.+|.
T Consensus 49 ~~valaE-~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL-q~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 49 KAIALAE-AGDLDGALELFGQALCLAPERASAYNNRAQALRL-QGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHh-ccchHHHHHHHHHHHHhcccchHhhccHHHHHHH-cCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 3455556 8999999999999999999999999999999998 999999999999999997633 567888899999
Q ss_pred HcCCchHHHHhhh
Q 020094 289 DAGDDEEEEQDNE 301 (331)
Q Consensus 289 ~lG~~eEa~~~~~ 301 (331)
..|+++.|..+++
T Consensus 127 l~g~dd~AR~DFe 139 (175)
T KOG4555|consen 127 LLGNDDAARADFE 139 (175)
T ss_pred HhCchHHHHHhHH
Confidence 9999999988887
No 182
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.57 E-value=0.0013 Score=65.28 Aligned_cols=128 Identities=18% Similarity=0.207 Sum_probs=102.0
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHH-----------HHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020094 181 NYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFL-----------KEVRGDFAKAEELCGRAILANPSDGNILS 246 (331)
Q Consensus 181 ~~y~s~gd~ekA~e~yerAL~~nP~n---~~~l~nLA~~L-----------~~~~gd~ekAee~~erALeldP~d~~al~ 246 (331)
.++.++|++++|+.-|.++|.-+|.+ .++...++.+- +...||+..|+++..+.|++.|=|+..+.
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~ 193 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQ 193 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHH
Confidence 35667799999999999999999954 34444444221 11247899999999999999999998887
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhhhhc-ccCC
Q 020094 247 LYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEESQH-QTDH 309 (331)
Q Consensus 247 ~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~~~-~~~~ 309 (331)
..+.++.. .|+...|+.-++.+-++..++.+.++.+..+++..|+.++.-+..+|-++ .+++
T Consensus 194 ~Rakc~i~-~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdH 256 (504)
T KOG0624|consen 194 ARAKCYIA-EGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDH 256 (504)
T ss_pred HHHHHHHh-cCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcch
Confidence 77777776 99999999999999999999999999999999999999888777776555 4444
No 183
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.55 E-value=0.00022 Score=45.58 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020094 244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPD 275 (331)
Q Consensus 244 al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~ 275 (331)
+|+.+|.+++. .|++++|+.+|+++++++|+
T Consensus 3 ~~~~lg~~~~~-~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQ-LGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHH-hCCHHHHHHHHHHHHHHCcC
Confidence 34444444444 44444444444444444443
No 184
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.55 E-value=0.00023 Score=45.50 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 020094 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD 241 (331)
Q Consensus 207 ~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d 241 (331)
+.+++.+|.+++. .|++++|+++|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~-~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQ-LGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHCcCC
Confidence 5688999999776 999999999999999999986
No 185
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=0.00031 Score=69.88 Aligned_cols=120 Identities=11% Similarity=0.009 Sum_probs=94.2
Q ss_pred hHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------HhCCC----
Q 020094 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAI--------------LANPS---- 240 (331)
Q Consensus 179 ~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erAL--------------eldP~---- 240 (331)
+|.||+..|+|++|+..|.-+.+.+--+.+++.+||.+.+. .|.|.+|..+..+|- +++..
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~Fy-Lg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~ 141 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFY-LGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRIL 141 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHH-HHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHH
Confidence 57899999999999999999999888889999999988766 899999887765542 22211
Q ss_pred --------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhh
Q 020094 241 --------DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDN 300 (331)
Q Consensus 241 --------d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~ 300 (331)
-..-...+|.+.|+ .-.|.+|+..|++.+.-+|+-..+-.++|.+|.++.-++-....+
T Consensus 142 ~fh~~LqD~~EdqLSLAsvhYm-R~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl 208 (557)
T KOG3785|consen 142 TFHSSLQDTLEDQLSLASVHYM-RMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVL 208 (557)
T ss_pred HHHHHHhhhHHHHHhHHHHHHH-HHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHH
Confidence 01112246666777 678999999999999999988888889999999999887765444
No 186
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.52 E-value=0.0012 Score=62.90 Aligned_cols=104 Identities=16% Similarity=0.171 Sum_probs=84.0
Q ss_pred ccchHHHHHhC-CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHH
Q 020094 176 SGSNNNYSNNN-HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG---NILSLYADL 251 (331)
Q Consensus 176 ~~N~A~~y~s~-gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~---~al~~yA~l 251 (331)
...+|..-+.. ++.+.|..+|+++++..|.+..+|..|..++.. .+|.++|..+|++++..-|.+. .+|..+..+
T Consensus 38 y~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~-~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~f 116 (280)
T PF05843_consen 38 YVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK-LNDINNARALFERAISSLPKEKQSKKIWKKFIEF 116 (280)
T ss_dssp HHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 44567775554 555669999999999999999999999999876 8999999999999999877665 688788888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020094 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLA 281 (331)
Q Consensus 252 l~~~~Gd~deA~~yfekAL~ldP~d~~vl~ 281 (331)
-.. .|+.+...++++++.+..|++..+..
T Consensus 117 E~~-~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 117 ESK-YGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp HHH-HS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred HHH-cCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 777 99999999999999999998665444
No 187
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.0016 Score=64.45 Aligned_cols=119 Identities=15% Similarity=0.086 Sum_probs=99.8
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHHc
Q 020094 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA-NPSD---GNILSLYADLIWQAH 256 (331)
Q Consensus 181 ~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALel-dP~d---~~al~~yA~ll~~~~ 256 (331)
..+...|++.+|.....+.|...|.+-.++-.--.+++. .|+...-.-.++|.+-. ||+- .++.-+|+-.+.+ .
T Consensus 111 ai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy-~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E-~ 188 (491)
T KOG2610|consen 111 AILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFY-NGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE-C 188 (491)
T ss_pred HHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHh-ccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH-h
Confidence 445566888889899999999999998876555455444 78888888888999877 7765 5677678777887 9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 257 KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 257 Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
|-|++|++..++|+++++.|+.+.-..+.++...++..|+.+-++
T Consensus 189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 999999999999999999999999999999999999999987766
No 188
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.43 E-value=0.00028 Score=45.46 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020094 244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPD 275 (331)
Q Consensus 244 al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~ 275 (331)
+|.++|.+++. ++++++|+.+|++|++++|+
T Consensus 3 ~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQ-LGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHH-hCCchHHHHHHHHHHHHCcC
Confidence 44445555554 55555555555555555553
No 189
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.41 E-value=0.0025 Score=68.87 Aligned_cols=124 Identities=13% Similarity=0.116 Sum_probs=94.7
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHH
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA-----LLLGNYARFLKEVRGDFAKAEELCGRAILANPS--D----GNI 244 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~-----~~l~nLA~~L~~~~gd~ekAee~~erALeldP~--d----~~a 244 (331)
....+..+...+++++|..+++++++..+... .++..+|.++.. .|++++|+.++++++..... + ..+
T Consensus 455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~-~G~~~~A~~~~~~al~~~~~~g~~~~~~~~ 533 (903)
T PRK04841 455 NALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC-KGELARALAMMQQTEQMARQHDVYHYALWS 533 (903)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 34467778889999999999999998655432 234566666554 99999999999999976432 1 234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 245 LSLYADLIWQAHKDASRAESYFDQAVKSAPD--------DCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 245 l~~yA~ll~~~~Gd~deA~~yfekAL~ldP~--------d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
+..++.+++. .|++++|..++++++++... ...++..++.+++..|+.++|...++
T Consensus 534 ~~~la~~~~~-~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~ 597 (903)
T PRK04841 534 LLQQSEILFA-QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCAR 597 (903)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 5567777787 99999999999999997331 23455677889999999999987776
No 190
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.38 E-value=0.00034 Score=45.10 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 020094 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD 241 (331)
Q Consensus 207 ~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d 241 (331)
+.+++++|.++.. .+++++|+.+|++||+++|+|
T Consensus 1 a~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQ-LGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHH-hCCchHHHHHHHHHHHHCcCC
Confidence 4567888888655 888888888888888888864
No 191
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0004 Score=65.77 Aligned_cols=92 Identities=15% Similarity=0.084 Sum_probs=81.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhh
Q 020094 221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDN 300 (331)
Q Consensus 221 ~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~ 300 (331)
-..|..|+.+|-+||.++|..+.+|.+-+..+++ .++++.+..--++|++++|+..-.++.++..+.....+.++.+.+
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk-~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~L 101 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLK-LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVL 101 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH-hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 4568999999999999999999999899998888 999999999999999999999999999999999999999999988
Q ss_pred hhhhcccCCCCCCCCc
Q 020094 301 EESQHQTDHSHTSPPN 316 (331)
Q Consensus 301 ~~~~~~~~~~~~~~~~ 316 (331)
+ .++...+..|++
T Consensus 102 q---ra~sl~r~~~~~ 114 (284)
T KOG4642|consen 102 Q---RAYSLLREQPFT 114 (284)
T ss_pred H---HHHHHHhcCCCC
Confidence 7 444444444444
No 192
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.35 E-value=0.0037 Score=67.54 Aligned_cols=124 Identities=15% Similarity=0.120 Sum_probs=95.4
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------C
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS--------D 241 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n------~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~--------d 241 (331)
..+++..+...|++++|..+|++++...... ...+.++|.++.. .|++++|+.++++++.+... .
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~-~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA-QGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 3567888889999999999999999764321 2345667777665 99999999999999886321 2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 242 GNILSLYADLIWQAHKDASRAESYFDQAVKSAP-----DDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 242 ~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP-----~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
..++..++.+++. .|++++|..++++++.+.. .....+..++.++...|+.++|...++
T Consensus 573 ~~~~~~la~~~~~-~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~ 636 (903)
T PRK04841 573 EFLLRIRAQLLWE-WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLN 636 (903)
T ss_pred HHHHHHHHHHHHH-hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3345567778888 8999999999999988743 124566678999999999999976655
No 193
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.34 E-value=0.00067 Score=61.60 Aligned_cols=69 Identities=22% Similarity=0.217 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--c-------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020094 224 FAKAEELCGRAILANPSDGNILSLYADLIWQA--H-------KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGD 292 (331)
Q Consensus 224 ~ekAee~~erALeldP~d~~al~~yA~ll~~~--~-------Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~ 292 (331)
++.|.+.++.+...||+|++.+.+.+..+.+. . .-+++|+.-|++||.++|+..+++.++|.+|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999998873 1 225688888999999999999999999999997764
No 194
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.0016 Score=62.73 Aligned_cols=123 Identities=17% Similarity=0.114 Sum_probs=102.5
Q ss_pred cchHHHHHhCCCcHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHhCC--CCHHHHHHHH
Q 020094 177 GSNNNYSNNNHGSSSTDAYYEKMIEAN-PGNALLLGNYARFLKEVRGDFAKAEELCGRA----ILANP--SDGNILSLYA 249 (331)
Q Consensus 177 ~N~A~~y~s~gd~ekA~e~yerAL~~n-P~n~~~l~nLA~~L~~~~gd~ekAee~~erA----LeldP--~d~~al~~yA 249 (331)
+-|+.|+--.++|.-.+..|.+.++.+ |.++.....|+.+... .||.+-|..+|++. -+++- ++-.|..+.+
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ-~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQ-IGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 446667777889999999999999998 6789999999999654 99999999999944 33443 3445565666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 250 DLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 250 ~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
.++.- .+++..|...|.+.+..||.++.+.-+-|.|+.-+|+..+|.|.++
T Consensus 260 ~i~lg-~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e 310 (366)
T KOG2796|consen 260 FLHLG-QNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLE 310 (366)
T ss_pred hheec-ccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHH
Confidence 66665 8999999999999999999999999999999999999999999998
No 195
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.25 E-value=0.0047 Score=63.64 Aligned_cols=93 Identities=13% Similarity=0.266 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020094 190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQA 269 (331)
Q Consensus 190 ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekA 269 (331)
.+-...|++|+...+.|+.+|.+|..+. ...+.+.+-...|.+++...|+++++|...|.-.++..-+++.|...|.++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~-kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFC-KKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 5667889999999999999999998884 436669999999999999999999999777777777344599999999999
Q ss_pred HHhCCCCHHHHHHH
Q 020094 270 VKSAPDDCYVLASY 283 (331)
Q Consensus 270 L~ldP~d~~vl~~L 283 (331)
+..+|+++.+|..+
T Consensus 167 LR~npdsp~Lw~ey 180 (568)
T KOG2396|consen 167 LRFNPDSPKLWKEY 180 (568)
T ss_pred hhcCCCChHHHHHH
Confidence 99999998877554
No 196
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.22 E-value=0.00096 Score=65.41 Aligned_cols=78 Identities=14% Similarity=0.193 Sum_probs=56.0
Q ss_pred cccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l 251 (331)
...+.|.|.-.++.|+.++|..+|+.|++++|++++++..+|.+... .++.-+|-+||-+|+.++|.|..++.+.+..
T Consensus 116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~-~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREM-HNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh-hhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 44566677777777777777777777777777777777777777554 5777777777777777777777777665543
No 197
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.20 E-value=0.0076 Score=52.77 Aligned_cols=84 Identities=13% Similarity=0.097 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 020094 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD---CYVL 280 (331)
Q Consensus 207 ~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d---~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d---~~vl 280 (331)
+..++.-|.-... .|+|.+|++.|+.+...-|.. ..+...++.+++. .+++++|+..+++-|+++|.+ .+++
T Consensus 10 ~~~ly~~a~~~l~-~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~-~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 10 PQELYQEAQEALQ-KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK-QGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred HHHHHHHHHHHHH-hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 4456666666444 899999999999999998864 4667778999998 999999999999999999955 5788
Q ss_pred HHHHHHHHHcCC
Q 020094 281 ASYAKFLWDAGD 292 (331)
Q Consensus 281 ~~LA~~L~~lG~ 292 (331)
+..|.++.....
T Consensus 88 Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 88 YMRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHHhh
Confidence 888988887765
No 198
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0013 Score=64.79 Aligned_cols=93 Identities=13% Similarity=0.104 Sum_probs=78.7
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094 180 NNYSNNNHGSSSTDAYYEKMIEANPGNALL----LGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 180 A~~y~s~gd~ekA~e~yerAL~~nP~n~~~----l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~ 255 (331)
+..|++..+|..|..+|.+.|+.+-.|+++ ++|-|.+.+. .++|..|+.-+.+|+.++|.+..+++.-|.++++
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~-l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e- 165 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY-LGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE- 165 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH-
Confidence 356777789999999999999998776654 5566666555 8999999999999999999999999888898998
Q ss_pred cCCHHHHHHHHHHHHHhCC
Q 020094 256 HKDASRAESYFDQAVKSAP 274 (331)
Q Consensus 256 ~Gd~deA~~yfekAL~ldP 274 (331)
..++++|..+.+..+.++-
T Consensus 166 Le~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 166 LERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred HHHHHHHHHHHhhhhhhhH
Confidence 9998888888887777654
No 199
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.11 E-value=0.0067 Score=64.16 Aligned_cols=123 Identities=21% Similarity=0.176 Sum_probs=105.4
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPG----NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---------- 241 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~----n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d---------- 241 (331)
-..+|++|...++.+.|...|+++...+=. -+.+|.+.|.+- ....+++.|.++.++|..+ |.+
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemE-lrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEME-LRHENFEAALKLMRRATHV-PTNPELEYYDNSE 467 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHH-HhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCC
Confidence 356999999999999999999999998643 367888999874 4488999999999999864 332
Q ss_pred ---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 242 ---------GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 242 ---------~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
..+|..|+++.-- .|=++.....|++.+++---.+.+..|+|.+|.....++++-+.+|
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs-~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YE 535 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEES-LGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYE 535 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3577778776665 8999999999999999988889999999999999999999999998
No 200
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.11 E-value=0.0074 Score=51.03 Aligned_cols=84 Identities=20% Similarity=0.251 Sum_probs=38.5
Q ss_pred HhCCCcHHHHHHHHHHHHhCCCCHH----------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 020094 184 NNNHGSSSTDAYYEKMIEANPGNAL----------------------LLGNYARFLKEVRGDFAKAEELCGRAILANPSD 241 (331)
Q Consensus 184 ~s~gd~ekA~e~yerAL~~nP~n~~----------------------~l~nLA~~L~~~~gd~ekAee~~erALeldP~d 241 (331)
...++.+.+...+++++.+-..+.. ++..++.++.. .|++++|++++++++.++|.|
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~l~~dP~~ 95 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLE-AGDYEEALRLLQRALALDPYD 95 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHhcCCCC
Confidence 3456677888888888876432211 11122222222 445555555555555555555
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020094 242 GNILSLYADLIWQAHKDASRAESYFDQA 269 (331)
Q Consensus 242 ~~al~~yA~ll~~~~Gd~deA~~yfekA 269 (331)
-.++..+..++.. .|+..+|+.+|++.
T Consensus 96 E~~~~~lm~~~~~-~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 96 EEAYRLLMRALAA-QGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-CcCHHHHHHHHHHH
Confidence 5555444444444 55555555555444
No 201
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.10 E-value=0.00091 Score=65.58 Aligned_cols=67 Identities=21% Similarity=0.289 Sum_probs=61.8
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFL 287 (331)
Q Consensus 220 ~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L 287 (331)
+.|+.++|..+|+.|+.++|++++++..++.+.-+ .++.-+|-.||-+|+.++|.+.+++.+.++..
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~-~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREM-HNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh-hhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 38999999999999999999999999999999888 89999999999999999999999888776543
No 202
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.08 E-value=0.013 Score=54.23 Aligned_cols=112 Identities=15% Similarity=0.085 Sum_probs=94.5
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 020094 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAIL-ANPSDGNILSLYADLIWQAHKDASRAESY 265 (331)
Q Consensus 187 gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALe-ldP~d~~al~~yA~ll~~~~Gd~deA~~y 265 (331)
=+-+.+..-..+.+.+.|.+..- +.||..+.+ .|++.+|+.+|++++. +--+|+.++..++...+. .+++.+|...
T Consensus 70 ldP~R~~Rea~~~~~~ApTvqnr-~rLa~al~e-lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa-~~~~A~a~~t 146 (251)
T COG4700 70 LDPERHLREATEELAIAPTVQNR-YRLANALAE-LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA-IQEFAAAQQT 146 (251)
T ss_pred cChhHHHHHHHHHHhhchhHHHH-HHHHHHHHH-hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh-hccHHHHHHH
Confidence 34566666666677777776544 568888777 9999999999999985 456899999899999998 9999999999
Q ss_pred HHHHHHhCC--CCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 266 FDQAVKSAP--DDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 266 fekAL~ldP--~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
+++..+.+| ..++...-++..|...|.+++|+..+|
T Consensus 147 Le~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe 184 (251)
T COG4700 147 LEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFE 184 (251)
T ss_pred HHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHH
Confidence 999999999 678889999999999999999987776
No 203
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.07 E-value=0.0064 Score=62.55 Aligned_cols=121 Identities=17% Similarity=0.192 Sum_probs=85.2
Q ss_pred chHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020094 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (331)
Q Consensus 178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~G 257 (331)
-||++=..++++..|...|++||..+-.+.-+|..||.+- .+......|.-.+.|||.+-|.-...|+.|...--. .|
T Consensus 78 kYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~E-mknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~-Lg 155 (677)
T KOG1915|consen 78 KYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFE-MKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEM-LG 155 (677)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHH-HhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHH-hc
Confidence 4677777788888888888888888888888888888774 336667777778888888777777777666444444 67
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 258 DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 258 d~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
+.+-|.+.|++=+...| +..+|..+..+-.+-.+.+-|-..++
T Consensus 156 Ni~gaRqiferW~~w~P-~eqaW~sfI~fElRykeieraR~IYe 198 (677)
T KOG1915|consen 156 NIAGARQIFERWMEWEP-DEQAWLSFIKFELRYKEIERARSIYE 198 (677)
T ss_pred ccHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 77777777777777777 44456666666666666555555443
No 204
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.07 E-value=0.0068 Score=64.15 Aligned_cols=125 Identities=22% Similarity=0.273 Sum_probs=104.2
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN--PSDGNILSLYADLIW 253 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeld--P~d~~al~~yA~ll~ 253 (331)
-.-|+++....|=++.....|.++|.+-=-.|.+..|||.+|.+ ..-+++|.+.|+|-|.+- |+-.++|..|.....
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEe-h~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi 558 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEE-HKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFI 558 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999866 777899999999999885 678889988877665
Q ss_pred HHc--CCHHHHHHHHHHHHHhCC-CCH-HHHHHHHHHHHHcCCchHHHHhhh
Q 020094 254 QAH--KDASRAESYFDQAVKSAP-DDC-YVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 254 ~~~--Gd~deA~~yfekAL~ldP-~d~-~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
..- -..++|..+|++|++.+| .++ .++.-++.+..+-|--..+...++
T Consensus 559 ~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiye 610 (835)
T KOG2047|consen 559 KRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYE 610 (835)
T ss_pred HHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 433 368999999999999999 333 566777777777777666766666
No 205
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.06 E-value=0.00068 Score=68.55 Aligned_cols=121 Identities=12% Similarity=-0.008 Sum_probs=94.1
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----C--CHH
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILANP----S--DGN 243 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n------~~~l~nLA~~L~~~~gd~ekAee~~erALeldP----~--d~~ 243 (331)
.+|++..|+-.|+|+.|+.+-+.-|++.-.. ..++.|+|.++.. .|+++-|+++|.+++.+.- . .+.
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif-lg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF-LGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh-hcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4577888999999999999999888775432 3467888888655 8999999999998765532 2 233
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCchHHHH
Q 020094 244 ILSLYADLIWQAHKDASRAESYFDQAVKSAP------DDCYVLASYAKFLWDAGDDEEEEQ 298 (331)
Q Consensus 244 al~~yA~ll~~~~Gd~deA~~yfekAL~ldP------~d~~vl~~LA~~L~~lG~~eEa~~ 298 (331)
.-+.++..++. ..++++|+.|+.+-+++.. -...+++.|+.++..+|+-+.|-.
T Consensus 277 scYSLgNtytl-l~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~ 336 (639)
T KOG1130|consen 277 SCYSLGNTYTL-LKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY 336 (639)
T ss_pred HHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH
Confidence 34467888888 8899999999999888754 345688899999999998887743
No 206
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.0034 Score=61.47 Aligned_cols=129 Identities=11% Similarity=-0.008 Sum_probs=101.4
Q ss_pred cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH-----------------------
Q 020094 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELC----------------------- 231 (331)
Q Consensus 175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~----------------------- 231 (331)
...-++.||+...+|..|-.||++.-...|........+|+-++. .+.+..|+...
T Consensus 46 gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~-A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYs 124 (459)
T KOG4340|consen 46 GLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK-ACIYADALRVAFLLLDNPALHSRVLQLQAAIKYS 124 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH-hcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc
Confidence 345678899999999999999999999999988887777766655 44444433221
Q ss_pred -------HHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhh
Q 020094 232 -------GRAILANP--SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEE 302 (331)
Q Consensus 232 -------erALeldP--~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~ 302 (331)
+-.++.-| +++.++.+.+-++|+ .|++++|++-|+.|++....++-+-++++.+....++...|-+..-|
T Consensus 125 e~Dl~g~rsLveQlp~en~Ad~~in~gCllyk-egqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSE 203 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSENEADGQINLGCLLYK-EGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISE 203 (459)
T ss_pred cccCcchHHHHHhccCCCccchhccchheeec-cccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHH
Confidence 12233334 577788788888888 99999999999999999999999999999999999999999776654
Q ss_pred hhc
Q 020094 303 SQH 305 (331)
Q Consensus 303 ~~~ 305 (331)
+..
T Consensus 204 Iie 206 (459)
T KOG4340|consen 204 IIE 206 (459)
T ss_pred HHH
Confidence 443
No 207
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.04 E-value=0.0026 Score=59.26 Aligned_cols=88 Identities=19% Similarity=0.129 Sum_probs=75.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094 215 RFLKEVRGDFAKAEELCGRAILANPSDG-----NILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD 289 (331)
Q Consensus 215 ~~L~~~~gd~ekAee~~erALeldP~d~-----~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~ 289 (331)
.-++. .|+|++|..-|.+||++-|.-+ ..|.+.|.++.. ++..+.|+.-..+||+++|.+..++...|.+|.+
T Consensus 103 N~~F~-ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iK-l~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFK-NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIK-LRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhh-cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHH-hhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 33444 7999999999999999999643 455566677776 9999999999999999999999999999999999
Q ss_pred cCCchHHHHhhhhhh
Q 020094 290 AGDDEEEEQDNEESQ 304 (331)
Q Consensus 290 lG~~eEa~~~~~~~~ 304 (331)
+..++++..+++.++
T Consensus 181 ~ek~eealeDyKki~ 195 (271)
T KOG4234|consen 181 MEKYEEALEDYKKIL 195 (271)
T ss_pred hhhHHHHHHHHHHHH
Confidence 999999998887433
No 208
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.99 E-value=0.0065 Score=65.96 Aligned_cols=110 Identities=13% Similarity=0.033 Sum_probs=95.2
Q ss_pred CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 020094 186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESY 265 (331)
Q Consensus 186 ~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~y 265 (331)
.+++.+|..-+.+.++..|+...+...-|..+.+ .|++++|..+++..-..-++|-..+-.+-.++.+ ++++++|..+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r-~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d-~~~~d~~~~~ 99 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFR-LGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRD-LGKLDEAVHL 99 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-hcCchhHHHHHhhhccCCCCchHHHHHHHHHHHH-HhhhhHHHHH
Confidence 3689999999999999999999998888888766 9999999988877777778888888666666666 9999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHH
Q 020094 266 FDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQ 298 (331)
Q Consensus 266 fekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~ 298 (331)
|++++..+|. .+.++.+=.+|.+.+++.+..+
T Consensus 100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQk 131 (932)
T KOG2053|consen 100 YERANQKYPS-EELLYHLFMAYVREKSYKKQQK 131 (932)
T ss_pred HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 8888888888998888776654
No 209
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.013 Score=56.32 Aligned_cols=115 Identities=17% Similarity=0.088 Sum_probs=94.2
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020094 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKE---VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (331)
Q Consensus 181 ~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~---~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~G 257 (331)
.++-+..+++-|+...+++..++.+ .++.+||...-. ....+..|.-+|+..-+.-|-.+..+.-.+.+... ++
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~-~~ 221 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ-LG 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHH-hc
Confidence 4566677889999999988777654 555666654222 12458999999999999777788888788888888 99
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHH
Q 020094 258 DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQ 298 (331)
Q Consensus 258 d~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~ 298 (331)
++++|+..++.|+..++++++++.|+..+-...|.+.+...
T Consensus 222 ~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 222 RYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHH
Confidence 99999999999999999999999999999999999977654
No 210
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.94 E-value=0.00061 Score=67.22 Aligned_cols=92 Identities=18% Similarity=0.081 Sum_probs=77.4
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 020094 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS 260 (331)
Q Consensus 181 ~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~d 260 (331)
.-....|+++.|++.|..+|.+||..+.++..-|.++.+ ++....|+.-|..|+++||+-+.-+-..+..... +|+++
T Consensus 122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lk-l~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl-lg~~e 199 (377)
T KOG1308|consen 122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLK-LKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL-LGNWE 199 (377)
T ss_pred HHHhcCcchhhhhcccccccccCCchhhhcccccceeee-ccCCchhhhhhhhhhccCcccccccchhhHHHHH-hhchH
Confidence 344556889999999999999999999999999988654 8999999999999999999876665334444444 89999
Q ss_pred HHHHHHHHHHHhCC
Q 020094 261 RAESYFDQAVKSAP 274 (331)
Q Consensus 261 eA~~yfekAL~ldP 274 (331)
+|..++..|++++-
T Consensus 200 ~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 200 EAAHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHHHhccc
Confidence 99999999999976
No 211
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.89 E-value=0.0027 Score=63.50 Aligned_cols=128 Identities=16% Similarity=-0.009 Sum_probs=77.4
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HH
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA-----LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG------NI 244 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~-----~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~------~a 244 (331)
..|+|+-+....++.+++.|..-.+..-...+ .....++.++. ..+.+++++++|++|+....++. .|
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahl-gls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHL-GLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhh-hHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 34666667777777777777776666544333 23333444432 25667777777777776654432 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHcCCchHHHHhhhhhhc
Q 020094 245 LSLYADLIWQAHKDASRAESYFDQAVKSAP----------DDCYVLASYAKFLWDAGDDEEEEQDNEESQH 305 (331)
Q Consensus 245 l~~yA~ll~~~~Gd~deA~~yfekAL~ldP----------~d~~vl~~LA~~L~~lG~~eEa~~~~~~~~~ 305 (331)
...++.++-. .+|+++|..+..+|+++-. ..+.+++.+++.|..+|+.-.|.+.|+|..+
T Consensus 165 cv~Lgslf~~-l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~k 234 (518)
T KOG1941|consen 165 CVSLGSLFAQ-LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMK 234 (518)
T ss_pred hhhHHHHHHH-HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4455555555 6777777777777777632 1234566777777777777666666665444
No 212
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.89 E-value=0.034 Score=52.98 Aligned_cols=106 Identities=16% Similarity=0.099 Sum_probs=70.9
Q ss_pred CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHH
Q 020094 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG---NIL 245 (331)
Q Consensus 172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n---~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~---~al 245 (331)
-.-..+|-+.-....|++++|..+|+.+...+|.. ..+...++.+.+. .++|+.|+...++-+.+.|+++ +++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk-~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK-NGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 34456677777777889999999999999988876 4466777777666 8999999999999999988754 333
Q ss_pred HHHHHHHHHHcC----C---HHHHHHHHHHHHHhCCCCHH
Q 020094 246 SLYADLIWQAHK----D---ASRAESYFDQAVKSAPDDCY 278 (331)
Q Consensus 246 ~~yA~ll~~~~G----d---~deA~~yfekAL~ldP~d~~ 278 (331)
+..+...+.... | ..+|+.-|+..|+.-|+..+
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y 151 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRY 151 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcc
Confidence 333333322111 1 22555556666666665443
No 213
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=0.016 Score=60.84 Aligned_cols=115 Identities=16% Similarity=0.064 Sum_probs=90.3
Q ss_pred cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020094 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH 256 (331)
Q Consensus 177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~ 256 (331)
..-|.|.++.+..++|+..++ -.++.+..++...|+++|. +++|++|...|+..++.+-++.+... .+.++..
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYr-l~~ydealdiY~~L~kn~~dd~d~~~-r~nl~a~-- 155 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYR-LERYDEALDIYQHLAKNNSDDQDEER-RANLLAV-- 155 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCchHHHHH-HHHHHHH--
Confidence 456889999999999999998 5678888888889999887 99999999999999998888877763 3333332
Q ss_pred CCHHHHHHH-HHHHHHhCCC-CHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 257 KDASRAESY-FDQAVKSAPD-DCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 257 Gd~deA~~y-fekAL~ldP~-d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
..+... ..+.+...|+ +.+.+||.|-++...|++.+|++.++
T Consensus 156 ---~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~ 199 (652)
T KOG2376|consen 156 ---AAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLE 199 (652)
T ss_pred ---HHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 112211 5677777775 67899999999999999999986554
No 214
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.80 E-value=0.0087 Score=62.65 Aligned_cols=109 Identities=13% Similarity=0.008 Sum_probs=83.5
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHcCCHH
Q 020094 185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP----SDGNILSLYADLIWQAHKDAS 260 (331)
Q Consensus 185 s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP----~d~~al~~yA~ll~~~~Gd~d 260 (331)
..++|++|.....+++...|++..++..--.++-. ...|++|. +.|+.++ .+... +..|.+.|+ .+..|
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq-~~ky~~AL----k~ikk~~~~~~~~~~~-fEKAYc~Yr-lnk~D 96 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQ-LDKYEDAL----KLIKKNGALLVINSFF-FEKAYCEYR-LNKLD 96 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhh-hhHHHHHH----HHHHhcchhhhcchhh-HHHHHHHHH-cccHH
Confidence 34789999999999999999999987755444433 67788887 4444444 23332 467888888 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhhh
Q 020094 261 RAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEES 303 (331)
Q Consensus 261 eA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~ 303 (331)
+|++.++ -+++.+..++.-.|.+++++|+++|+-+.+++.
T Consensus 97 ealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L 136 (652)
T KOG2376|consen 97 EALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHL 136 (652)
T ss_pred HHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999988 556666777888899999999999998888744
No 215
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.76 E-value=0.044 Score=53.40 Aligned_cols=112 Identities=18% Similarity=0.221 Sum_probs=91.8
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHH
Q 020094 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK--DASRAESYF 266 (331)
Q Consensus 189 ~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~G--d~deA~~yf 266 (331)
.+.-+.+|++||+.||++..++..|-..... .-+-++..+-+++++..+|+++..|..|..+...... .++.....|
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~-~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEK-VWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 4788999999999999999999988877555 6688999999999999999999999888777665333 477888888
Q ss_pred HHHHHhCC------------------CCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 267 DQAVKSAP------------------DDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 267 ekAL~ldP------------------~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
.++++.-. .-.+++..++.++.+.|..|.|....+
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Q 178 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQ 178 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHH
Confidence 88777622 123578899999999999999987665
No 216
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.76 E-value=0.0028 Score=40.53 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020094 244 ILSLYADLIWQAHKDASRAESYFDQAVKSAP 274 (331)
Q Consensus 244 al~~yA~ll~~~~Gd~deA~~yfekAL~ldP 274 (331)
+|..+|.++.. .|++++|+.+|+++++++|
T Consensus 3 ~~~~lg~~y~~-~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQ-LGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHH-TTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHhhCC
Confidence 44455555555 5666666666666665555
No 217
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.75 E-value=0.043 Score=55.09 Aligned_cols=121 Identities=15% Similarity=0.038 Sum_probs=95.1
Q ss_pred chHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHH
Q 020094 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYA-RFLKEVRGDFAKAEELCGRAILANPS-DGNILSLYADLIWQA 255 (331)
Q Consensus 178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA-~~L~~~~gd~ekAee~~erALeldP~-d~~al~~yA~ll~~~ 255 (331)
|-|..-...|+|.+|+....++-+..+ .|...+.+| .+. ...||++.|-.|+.+|-++.++ +-.+....+.++..
T Consensus 89 ~egl~~l~eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA-~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~- 165 (400)
T COG3071 89 NEGLLKLFEGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAA-QQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN- 165 (400)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHH-HhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh-
Confidence 334444556899999999999665444 444444444 554 4499999999999999999443 34455577888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 256 ~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
+++++.|..-+.++++..|.++.++.-...+|.+.|++.+..+...
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~ 211 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILP 211 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999999999999999999999999999999988765443
No 218
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.011 Score=56.78 Aligned_cols=91 Identities=22% Similarity=0.237 Sum_probs=80.0
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH-HHH
Q 020094 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRA-ESY 265 (331)
Q Consensus 187 gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA-~~y 265 (331)
.++..|.-+|+.+=..-|-++.++...|.+.. .+++|++|+..++.|+..+++++.++.++..+... .|.-+++ .++
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l-~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~-~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHL-QLGRYEEAESLLEEALDKDAKDPETLANLIVLALH-LGKDAEVTERN 264 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHH-HhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCCChHHHHHH
Confidence 36799999999999888999999999998854 49999999999999999999999999999888888 7766554 588
Q ss_pred HHHHHHhCCCCHHH
Q 020094 266 FDQAVKSAPDDCYV 279 (331)
Q Consensus 266 fekAL~ldP~d~~v 279 (331)
+.+.....|+++.+
T Consensus 265 l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 265 LSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHhcCCcchHH
Confidence 88999999988865
No 219
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.74 E-value=0.02 Score=57.48 Aligned_cols=127 Identities=15% Similarity=0.042 Sum_probs=91.0
Q ss_pred cccccchHHHHHh---CCCcHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCC
Q 020094 173 SGFSGSNNNYSNN---NHGSSSTDAYYEK-MIEANPGNALLLGNYARFLKEVR--------GDFAKAEELCGRAILANPS 240 (331)
Q Consensus 173 ~~~~~N~A~~y~s---~gd~ekA~e~yer-AL~~nP~n~~~l~nLA~~L~~~~--------gd~ekAee~~erALeldP~ 240 (331)
..+...||-.+.+ .|+.++|+..+.. .....+.+++.+..+|.++.... ..+++|+.+|+++.+++|+
T Consensus 179 ~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~ 258 (374)
T PF13281_consen 179 HNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD 258 (374)
T ss_pred hHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence 3456678888888 8999999999999 55567789999999998765421 1378999999999999975
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------Hh---CC-CCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 241 DGNILSLYADLIWQAHKDASRAESYFDQAV--------KS---AP-DDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 241 d~~al~~yA~ll~~~~Gd~deA~~yfekAL--------~l---dP-~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
...- .|++.++.. .|...+...-.++.. +. ++ .+...+..+..+..-.++.+.+....+
T Consensus 259 ~Y~G-IN~AtLL~~-~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e 329 (374)
T PF13281_consen 259 YYSG-INAATLLML-AGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAE 329 (374)
T ss_pred ccch-HHHHHHHHH-cCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4433 477777776 665333322222221 11 23 566777888888889999999987776
No 220
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.69 E-value=0.036 Score=46.76 Aligned_cols=80 Identities=21% Similarity=0.140 Sum_probs=58.7
Q ss_pred cCCHHHHHHHHHHHHHhCCC----------------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020094 221 RGDFAKAEELCGRAILANPS----------------------DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCY 278 (331)
Q Consensus 221 ~gd~ekAee~~erALeldP~----------------------d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~ 278 (331)
.++...+++.+++|+.+... ...++..++..+.. .|++++|+.++++++..+|.+..
T Consensus 19 ~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~l~~dP~~E~ 97 (146)
T PF03704_consen 19 AGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLE-AGDYEEALRLLQRALALDPYDEE 97 (146)
T ss_dssp TT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-HH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHhcCCCCHH
Confidence 45666666666666655321 12344445666666 89999999999999999999999
Q ss_pred HHHHHHHHHHHcCCchHHHHhhh
Q 020094 279 VLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 279 vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
++..+..+|...|+..+|...++
T Consensus 98 ~~~~lm~~~~~~g~~~~A~~~Y~ 120 (146)
T PF03704_consen 98 AYRLLMRALAAQGRRAEALRVYE 120 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHH
Confidence 99999999999999999988776
No 221
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.0079 Score=59.00 Aligned_cols=116 Identities=13% Similarity=0.034 Sum_probs=95.7
Q ss_pred HhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 020094 184 NNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAE 263 (331)
Q Consensus 184 ~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~ 263 (331)
.+..+|+.|++++.--.+.+|.+...+..+|.+++. ..+|..|..+|++.-.+.|........++..+|. .+.+..|+
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~-~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~-A~i~ADAL 98 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYR-LQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK-ACIYADAL 98 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH-hcccHHHH
Confidence 455789999999999999999999999999999877 8999999999999999999999888888888888 88888887
Q ss_pred HHHHHHHH------------------------------hCC--CCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 264 SYFDQAVK------------------------------SAP--DDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 264 ~yfekAL~------------------------------ldP--~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
.......+ .-| +++++..+.|-++.+.|++++|-+-++
T Consensus 99 rV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 99 RVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 76654332 123 556677777777888888888876555
No 222
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.68 E-value=0.035 Score=54.12 Aligned_cols=96 Identities=16% Similarity=0.159 Sum_probs=81.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 020094 193 DAYYEKMIEANPGNALLLGNYARFLKEVRG-----------DFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR 261 (331)
Q Consensus 193 ~e~yerAL~~nP~n~~~l~nLA~~L~~~~g-----------d~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~de 261 (331)
..-|++.++.+|+|...|..|+.+...... -.++-+.+|++||+.+|++...+..|...... .-+.++
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~-~~~~~~ 83 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEK-VWDSEK 83 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHH
Confidence 356889999999999999999977554322 14678899999999999999999888887777 788899
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094 262 AESYFDQAVKSAPDDCYVLASYAKFLWD 289 (331)
Q Consensus 262 A~~yfekAL~ldP~d~~vl~~LA~~L~~ 289 (331)
..+-+++++..+|.+..+|..+-.+...
T Consensus 84 l~~~we~~l~~~~~~~~LW~~yL~~~q~ 111 (321)
T PF08424_consen 84 LAKKWEELLFKNPGSPELWREYLDFRQS 111 (321)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 9999999999999999999888777765
No 223
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.66 E-value=0.04 Score=52.38 Aligned_cols=116 Identities=15% Similarity=0.108 Sum_probs=93.2
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANP----GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS----------- 240 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP----~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~----------- 240 (331)
...+|....+.|.++-|..++.++...++ ..+.+...+|.+++. .|+..+|+..++..+.....
T Consensus 149 ~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~-~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~ 227 (352)
T PF02259_consen 149 WLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWA-QGEQEEAIQKLRELLKCRLSKNIDSISNAEL 227 (352)
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhhhccccccHHHH
Confidence 45788999999999999999999988763 257888889999998 99999999999998882111
Q ss_pred -----------------------CHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020094 241 -----------------------DGNILSLYADLIWQAH------KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG 291 (331)
Q Consensus 241 -----------------------d~~al~~yA~ll~~~~------Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG 291 (331)
-+.++..+|..+.. . ++.+++..+|++|++.+|.....|+.+|.++.+.=
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~ 306 (352)
T PF02259_consen 228 KSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDE-LYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLL 306 (352)
T ss_pred hhccccccccccccchhhhhHHHHHHHHHHHHHHHHh-hccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHH
Confidence 12344445555555 5 88999999999999999999999999999988764
Q ss_pred Cc
Q 020094 292 DD 293 (331)
Q Consensus 292 ~~ 293 (331)
+.
T Consensus 307 ~~ 308 (352)
T PF02259_consen 307 ES 308 (352)
T ss_pred Hh
Confidence 43
No 224
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.03 Score=54.51 Aligned_cols=115 Identities=16% Similarity=0.133 Sum_probs=80.9
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHHcCCH
Q 020094 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNIL-SLYADLIWQAHKDA 259 (331)
Q Consensus 181 ~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al-~~yA~ll~~~~Gd~ 259 (331)
.-....+++..|...|..++...|++.++...||.++.. .|+.+.|..++...=....++.... ..-..++.+ ....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~-~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q-aa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLA-AGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ-AAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHH-cCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH-HhcC
Confidence 344566899999999999999999999999999998766 9999988877766433222222222 111122222 3333
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHH
Q 020094 260 SRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQ 298 (331)
Q Consensus 260 deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~ 298 (331)
.+.. -+++.++.+|+|....+.+|..|...|+.++|-.
T Consensus 220 ~~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale 257 (304)
T COG3118 220 PEIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALE 257 (304)
T ss_pred CCHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3333 3667778889999999999999999998888854
No 225
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.025 Score=56.71 Aligned_cols=88 Identities=13% Similarity=0.040 Sum_probs=68.7
Q ss_pred hHHHHHhCCCcHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020094 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNA-LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (331)
Q Consensus 179 ~A~~y~s~gd~ekA~e~yerAL~~nP~n~-~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~G 257 (331)
+-+|+. ..+|..|+.+++-.+..+.... ..-..+|.+.+. .|||++|...|.-+.+.+.-++.++.++|-+.+. .|
T Consensus 29 Ledfls-~rDytGAislLefk~~~~~EEE~~~~lWia~C~fh-LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~Fy-Lg 105 (557)
T KOG3785|consen 29 LEDFLS-NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFH-LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFY-LG 105 (557)
T ss_pred HHHHHh-cccchhHHHHHHHhhccchhhhHHHHHHHHHHHHh-hccHHHHHHHHHHHhccCCCCcccchhHHHHHHH-HH
Confidence 444544 4589999999987776654433 333445555555 9999999999999999888899999999999998 99
Q ss_pred CHHHHHHHHHHH
Q 020094 258 DASRAESYFDQA 269 (331)
Q Consensus 258 d~deA~~yfekA 269 (331)
.|.+|.....+|
T Consensus 106 ~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 106 QYIEAKSIAEKA 117 (557)
T ss_pred HHHHHHHHHhhC
Confidence 999998876655
No 226
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.55 E-value=0.008 Score=63.13 Aligned_cols=114 Identities=18% Similarity=0.045 Sum_probs=94.2
Q ss_pred cccccchHHHHHhC-CCcHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020094 173 SGFSGSNNNYSNNN-HGSSSTDAYYEKMIEANPGNALL-LGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 173 ~~~~~N~A~~y~s~-gd~ekA~e~yerAL~~nP~n~~~-l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ 250 (331)
.-...|.|-+|.+. |+-..|..|+++|+...|....+ +.+||+++.. -+-.-.|..++.+++.++-..|-.++.++.
T Consensus 606 ~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~-~~~~~da~~~l~q~l~~~~sepl~~~~~g~ 684 (886)
T KOG4507|consen 606 IWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIH-YGLHLDATKLLLQALAINSSEPLTFLSLGN 684 (886)
T ss_pred eEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHH-hhhhccHHHHHHHHHhhcccCchHHHhcch
Confidence 33467888777766 78899999999999999986653 5788888655 556678999999999999888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLW 288 (331)
Q Consensus 251 ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~ 288 (331)
.+.. ..+.+.|++.|++|++++|++..+...|-.+-.
T Consensus 685 ~~l~-l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 685 AYLA-LKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hHHH-HhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 8877 999999999999999999999988777755444
No 227
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.016 Score=56.05 Aligned_cols=112 Identities=13% Similarity=0.109 Sum_probs=85.7
Q ss_pred cccchHHHHHhCCCcHHHHHHHHHHHHhC----CC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020094 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEAN----PG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY 248 (331)
Q Consensus 175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~n----P~--n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~y 248 (331)
....+++.....|+.+.|..||++.-+.+ .. +-.+..+.|.+ +...+|+..|...|.+.+..||.++.+-++.
T Consensus 214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i-~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnK 292 (366)
T KOG2796|consen 214 LLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL-HLGQNNFAEAHRFFTEILRMDPRNAVANNNK 292 (366)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh-eecccchHHHHHHHhhccccCCCchhhhchH
Confidence 34456666677899999999999655433 22 22233444544 5568999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH
Q 020094 249 ADLIWQAHKDASRAESYFDQAVKSAPDD---CYVLASYAKFLW 288 (331)
Q Consensus 249 A~ll~~~~Gd~deA~~yfekAL~ldP~d---~~vl~~LA~~L~ 288 (331)
|.+++. .|+...|++.++.++...|.. -.+.+++...|.
T Consensus 293 ALcllY-lg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyE 334 (366)
T KOG2796|consen 293 ALCLLY-LGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYE 334 (366)
T ss_pred HHHHHH-HHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHH
Confidence 999988 999999999999999999943 345556655443
No 228
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.55 E-value=0.0048 Score=39.45 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 020094 208 LLLGNYARFLKEVRGDFAKAEELCGRAILANPSD 241 (331)
Q Consensus 208 ~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d 241 (331)
.+++.+|.++.. .|++++|+++|+++++++|+|
T Consensus 2 ~~~~~lg~~y~~-~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQ-LGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCC
Confidence 466777777655 888888888888888888743
No 229
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.49 E-value=0.029 Score=56.31 Aligned_cols=125 Identities=17% Similarity=0.106 Sum_probs=98.3
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH--HcCCHHHHHHHHHH-HHHhCCCCHHHHHHH
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEA----NPGNALLLGNYARFLKE--VRGDFAKAEELCGR-AILANPSDGNILSLY 248 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~----nP~n~~~l~nLA~~L~~--~~gd~ekAee~~er-ALeldP~d~~al~~y 248 (331)
..|+=-.|....+|+.-+.+.+.+-.+ -++.+.+...||-++.+ ..|+.++|++.+.. .....+.+++++..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 446666788889999999999887776 56678888899988765 26899999999999 555667899999888
Q ss_pred HHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 249 ADLIWQA--------HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 249 A~ll~~~--------~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
|.++-+. ....++|+.+|.++++++| +.+.-.|++.++...|...+....++
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~~~el~ 283 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFETSEELR 283 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccchHHHH
Confidence 8775332 1247899999999999995 77888999999999998655554443
No 230
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.45 E-value=0.036 Score=62.92 Aligned_cols=116 Identities=13% Similarity=0.205 Sum_probs=98.7
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~--n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~ 253 (331)
-..|++++.++.+-++|...+++||.--|. +.++....|++-+. .||.+++..+|+..+..+|.-.++|..|...-.
T Consensus 1567 W~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk-~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ei 1645 (1710)
T KOG1070|consen 1567 WIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK-YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEI 1645 (1710)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh-cCCchhhHHHHHHHHhhCccchhHHHHHHHHHH
Confidence 456899999999999999999999999998 88899999999776 999999999999999999999999999999888
Q ss_pred HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH-cCCc
Q 020094 254 QAHKDASRAESYFDQAVKSA--PDDCYVLASYAKFLWD-AGDD 293 (331)
Q Consensus 254 ~~~Gd~deA~~yfekAL~ld--P~d~~vl~~LA~~L~~-lG~~ 293 (331)
. +++.+-+..+|+|++.+. |.....++..=.-|.+ .|+.
T Consensus 1646 k-~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1646 K-HGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred c-cCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 7 999999999999999984 4555555554444443 3443
No 231
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.39 E-value=0.012 Score=58.95 Aligned_cols=121 Identities=17% Similarity=0.040 Sum_probs=92.6
Q ss_pred hHHHHHhCCCcHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CH
Q 020094 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNAL------LLGNYARFLKEVRGDFAKAEELCGRAILANPS----------DG 242 (331)
Q Consensus 179 ~A~~y~s~gd~ekA~e~yerAL~~nP~n~~------~l~nLA~~L~~~~gd~ekAee~~erALeldP~----------d~ 242 (331)
++......+.+++++++|++|+++..++.+ +...|+.++.. ..|++||..+..+|.++--. ..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~-l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ-LKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH-HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 444445567899999999999998655433 45677888555 89999999999999887432 23
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 243 NILSLYADLIWQAHKDASRAESYFDQAVKSAP------DDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 243 ~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP------~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
-+++.++..+.+ +|..-.|.++.++|.++.- -.+..+..+|.+|...|+.|.+-..+|
T Consensus 207 ~~lyhmaValR~-~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 207 MSLYHMAVALRL-LGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HHHHHHHHHHHH-hcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 455567777777 9999999999999988832 445677889999999999888776666
No 232
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.38 E-value=0.0067 Score=62.56 Aligned_cols=113 Identities=14% Similarity=0.047 Sum_probs=90.0
Q ss_pred cchHHHHHhCCCcHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----h----C
Q 020094 177 GSNNNYSNNNHGSSSTDAYYEKM-IEANPG--------NALLLGNYARFLKEVRGDFAKAEELCGRAIL-----A----N 238 (331)
Q Consensus 177 ~N~A~~y~s~gd~ekA~e~yerA-L~~nP~--------n~~~l~nLA~~L~~~~gd~ekAee~~erALe-----l----d 238 (331)
.--+.+++.+|+|.+|...+... +...|. ...+|+|+|.+++. .+.|.-+..+|.+|++ + .
T Consensus 244 ~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~-~~~y~~~~~~F~kAL~N~c~qL~~g~~ 322 (696)
T KOG2471|consen 244 LLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQ-LGCYQASSVLFLKALRNSCSQLRNGLK 322 (696)
T ss_pred HHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeee-hhhHHHHHHHHHHHHHHHHHHHhccCC
Confidence 33567888899999998876532 333444 35567899988776 8999999999999996 1 1
Q ss_pred C---------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020094 239 P---------SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG 291 (331)
Q Consensus 239 P---------~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG 291 (331)
| ....++++.+..+.. .|+.-+|.++|.+|++..-.++.+|..+|.+.+..-
T Consensus 323 ~~~~~tls~nks~eilYNcG~~~Lh-~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~ 383 (696)
T KOG2471|consen 323 PAKTFTLSQNKSMEILYNCGLLYLH-SGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMAL 383 (696)
T ss_pred CCcceehhcccchhhHHhhhHHHHh-cCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 1 245778889888887 999999999999999999999999999999887543
No 233
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.36 E-value=0.033 Score=44.76 Aligned_cols=67 Identities=16% Similarity=0.054 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHH
Q 020094 192 TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD--GNILSLYADLIWQAHKDAS 260 (331)
Q Consensus 192 A~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d--~~al~~yA~ll~~~~Gd~d 260 (331)
.+..+++.++.||+|..+.+.+|..+.. .|++++|++.+..+|+.++++ ..+...+..++-. .|.-+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~-~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~-lg~~~ 75 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLA-AGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFEL-LGPGD 75 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHH-H-TT-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHH-cCCCC
Confidence 4567788888899999888888888665 888999999999998888764 5555444444333 55544
No 234
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.35 E-value=0.023 Score=47.81 Aligned_cols=93 Identities=13% Similarity=0.059 Sum_probs=58.5
Q ss_pred hHHHHHhCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcC---C-------HHHHHHHHHHHHHhCCCCHHHH
Q 020094 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNA---LLLGNYARFLKEVRG---D-------FAKAEELCGRAILANPSDGNIL 245 (331)
Q Consensus 179 ~A~~y~s~gd~ekA~e~yerAL~~nP~n~---~~l~nLA~~L~~~~g---d-------~ekAee~~erALeldP~d~~al 245 (331)
.|.-++..|++-+|+++.+..+..++++. .++..-|.+++.... | +-.|.++|.+++.+.|+.+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 46778899999999999999999999877 444444555433111 1 2346777777777777665555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020094 246 SLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 246 ~~yA~ll~~~~Gd~deA~~yfekAL~l 272 (331)
+.+|.-+-- ...|++++...++++..
T Consensus 82 ~~la~~l~s-~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGS-VKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhh-HHHHHHHHHHHHHHhcc
Confidence 555444322 33345555555555443
No 235
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.34 E-value=0.063 Score=55.59 Aligned_cols=102 Identities=14% Similarity=0.110 Sum_probs=79.1
Q ss_pred CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l 251 (331)
+.-+-.+|..|..+.+.+.+-...|.+++..+|+++++|..-|.-.++..-+.+.|..++.++|+.+|+.+..|..|-..
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRM 183 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHH
Confidence 45567789999999999999999999999999999999998887777755569999999999999999999999766554
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020094 252 IWQAHKDASRAESYFDQAVKSAPDDC 277 (331)
Q Consensus 252 l~~~~Gd~deA~~yfekAL~ldP~d~ 277 (331)
-.. +.+=...-++.+..+..+.
T Consensus 184 EL~----~~~Kl~~rr~~~g~~~~~~ 205 (568)
T KOG2396|consen 184 ELM----YAEKLRNRREELGLDSSDK 205 (568)
T ss_pred HHH----HHHHHHHHHHHhccccchh
Confidence 433 2222233445555554333
No 236
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=0.027 Score=56.06 Aligned_cols=118 Identities=18% Similarity=0.092 Sum_probs=92.8
Q ss_pred HHHHhCCCcHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020094 181 NYSNNNHGSSSTDAYYEKMIEA-NPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH 256 (331)
Q Consensus 181 ~~y~s~gd~ekA~e~yerAL~~-nP~n---~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~ 256 (331)
+.++.+|+...-+..+++++-. ||+- ..+...||--+.+ .|-|++|++..++|+++||.|+-+--..+-++.+ .
T Consensus 145 ~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E-~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem-~ 222 (491)
T KOG2610|consen 145 DAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE-CGIYDDAEKQADRALQINRFDCWASHAKAHVLEM-N 222 (491)
T ss_pred hHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH-hccchhHHHHHHhhccCCCcchHHHHHHHHHHHh-c
Confidence 3567778889999999999988 8887 4455566655555 8999999999999999999999998888888888 9
Q ss_pred CCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCchHHHHhh
Q 020094 257 KDASRAESYFDQAVKSAP----DDCYVLASYAKFLWDAGDDEEEEQDN 300 (331)
Q Consensus 257 Gd~deA~~yfekAL~ldP----~d~~vl~~LA~~L~~lG~~eEa~~~~ 300 (331)
+++.++++++.+--..=- --+..|-..|.++..-++++.+...+
T Consensus 223 ~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 223 GRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 999999998876533211 11334566788888889998886654
No 237
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.31 E-value=0.0072 Score=59.42 Aligned_cols=88 Identities=6% Similarity=0.147 Sum_probs=66.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020094 196 YEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPD 275 (331)
Q Consensus 196 yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~ 275 (331)
|.++-...|+++.+|..|+.+... .+-|.+-...|.++++..|.|++.|...+..-+...++++-+...|.+++..+|+
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k-~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIK-KKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 445566678888888888866443 6778888888888888888888888665555555478888888888888888888
Q ss_pred CHHHHHHHH
Q 020094 276 DCYVLASYA 284 (331)
Q Consensus 276 d~~vl~~LA 284 (331)
++.+|..+-
T Consensus 175 ~p~iw~eyf 183 (435)
T COG5191 175 SPRIWIEYF 183 (435)
T ss_pred CchHHHHHH
Confidence 888776553
No 238
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.26 E-value=0.092 Score=49.29 Aligned_cols=116 Identities=16% Similarity=0.060 Sum_probs=77.8
Q ss_pred CCcccccchHHHHHh----CCCcHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHhCC
Q 020094 171 GGSGFSGSNNNYSNN----NHGSSSTDAYYEKMIEANPGN-ALLLGNYARFLKEV------RGDFAKAEELCGRAILANP 239 (331)
Q Consensus 171 g~~~~~~N~A~~y~s----~gd~ekA~e~yerAL~~nP~n-~~~l~nLA~~L~~~------~gd~ekAee~~erALeldP 239 (331)
|+..-..+|+..|.. ..++.+|..+|+++....-.. ......++.++... .-+..+|..+|.+|....
T Consensus 107 g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~- 185 (292)
T COG0790 107 GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG- 185 (292)
T ss_pred ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-
Confidence 344445556666666 357899999999988875444 34456666664331 013457999999998877
Q ss_pred CCHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020094 240 SDGNILSLYADLIWQA---HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG 291 (331)
Q Consensus 240 ~d~~al~~yA~ll~~~---~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG 291 (331)
++.+...++.++..- ..++.+|..+|++|.+... ...++.++ ++...|
T Consensus 186 -~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 186 -NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred -CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 566666677555432 2378899999999988876 77788888 666555
No 239
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=0.078 Score=50.82 Aligned_cols=122 Identities=11% Similarity=0.065 Sum_probs=87.3
Q ss_pred cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHH------HHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH
Q 020094 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLL------GNYARFLKEVRGDFAKAEELCGRAILAN-----PSDGN 243 (331)
Q Consensus 175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l------~nLA~~L~~~~gd~ekAee~~erALeld-----P~d~~ 243 (331)
...-.|..|....++++|..++.+|+....+|...+ -..|-+ ......+.++..+|++|..+. |+-+-
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamL-ake~~klsEvvdl~eKAs~lY~E~GspdtAA 111 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAML-AKELSKLSEVVDLYEKASELYVECGSPDTAA 111 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence 334456778888999999999999997666554432 222333 333778999999999998874 43333
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCchHHHH
Q 020094 244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPDD------CYVLASYAKFLWDAGDDEEEEQ 298 (331)
Q Consensus 244 al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d------~~vl~~LA~~L~~lG~~eEa~~ 298 (331)
.-...+.-..+ ..+.++|+.+|++++++--.+ .+.+..++++|.+...++|+-.
T Consensus 112 maleKAak~le-nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~ 171 (308)
T KOG1585|consen 112 MALEKAAKALE-NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAAT 171 (308)
T ss_pred HHHHHHHHHhh-cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHH
Confidence 33345555666 789999999999999885432 2456677889999999998864
No 240
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.25 E-value=0.0033 Score=64.30 Aligned_cols=80 Identities=16% Similarity=0.044 Sum_probs=74.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhh
Q 020094 221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDN 300 (331)
Q Consensus 221 ~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~ 300 (331)
.++|+.|+..|-+||+++|+++.++.+.+..+.. .++|-.|+.-+.+|++++|.....|+.-|.+...++++.+|..++
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK-~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l 95 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK-VESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDL 95 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhhee-echhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHH
Confidence 6889999999999999999999999999877776 999999999999999999999999999999999999999998777
Q ss_pred h
Q 020094 301 E 301 (331)
Q Consensus 301 ~ 301 (331)
+
T Consensus 96 ~ 96 (476)
T KOG0376|consen 96 E 96 (476)
T ss_pred H
Confidence 5
No 241
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.24 E-value=0.022 Score=53.75 Aligned_cols=82 Identities=17% Similarity=0.173 Sum_probs=70.4
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHH
Q 020094 219 EVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQ 298 (331)
Q Consensus 219 ~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~ 298 (331)
...|-..-|.--|.+++.++|+-+.|++ |.++++...|+|+.|.+.|.-.+++||...++..|.|..+.-.|+++-|..
T Consensus 76 DSlGL~~LAR~DftQaLai~P~m~~vfN-yLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 76 DSLGLRALARNDFSQALAIRPDMPEVFN-YLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhhhHHHHHhhhhhhhhhcCCCcHHHHH-HHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHH
Confidence 3355566688889999999999999995 555555559999999999999999999999999999999999999999977
Q ss_pred hhh
Q 020094 299 DNE 301 (331)
Q Consensus 299 ~~~ 301 (331)
++.
T Consensus 155 d~~ 157 (297)
T COG4785 155 DLL 157 (297)
T ss_pred HHH
Confidence 664
No 242
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.02 E-value=0.048 Score=43.83 Aligned_cols=70 Identities=17% Similarity=0.068 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCchHHH
Q 020094 227 AEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAP--DDCYVLASYAKFLWDAGDDEEEE 297 (331)
Q Consensus 227 Aee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP--~d~~vl~~LA~~L~~lG~~eEa~ 297 (331)
.+.-++++++.+|+|..+.+.++..+.. .|++++|+..+-.+++.++ ++..+.-.+-.++..+|..+..-
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~-~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv 78 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLA-AGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLV 78 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHH
Confidence 3567899999999999999999999998 9999999999999999998 45778888888888888865443
No 243
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.13 Score=49.71 Aligned_cols=113 Identities=19% Similarity=0.157 Sum_probs=94.1
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH-HHH
Q 020094 185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS-RAE 263 (331)
Q Consensus 185 s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~d-eA~ 263 (331)
+...-.+|+.+.+.+|.+||.|--+|..--.++.....++.+-.+++.+.++-+|.|..+|...- ++.+..|+.. +-+
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr-~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRR-VIVELLGDPSFREL 133 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHH-HHHHHhcCcccchH
Confidence 33455889999999999999888777655566666677899999999999999999999995554 4444489888 889
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHH
Q 020094 264 SYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQ 298 (331)
Q Consensus 264 ~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~ 298 (331)
+..++++..|.+|..+|-..-+++..-+.++.+-+
T Consensus 134 ef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~ 168 (318)
T KOG0530|consen 134 EFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELA 168 (318)
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHH
Confidence 99999999999999999999999998888877754
No 244
>PRK10941 hypothetical protein; Provisional
Probab=95.87 E-value=0.07 Score=51.25 Aligned_cols=69 Identities=14% Similarity=-0.005 Sum_probs=59.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020094 211 GNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLA 281 (331)
Q Consensus 211 ~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~ 281 (331)
.++-.++ ...+++++|..+.++++.++|+++.-+.-.|.++.+ .+.+..|..-++..++.+|+++.+-.
T Consensus 185 ~nLK~~~-~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~q-L~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 185 DTLKAAL-MEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQ-LDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHH-HHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 3444443 448999999999999999999999999888888888 99999999999999999998887643
No 245
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.86 E-value=0.11 Score=53.93 Aligned_cols=106 Identities=17% Similarity=0.057 Sum_probs=80.7
Q ss_pred cccchHHHHHhCCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Q 020094 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILA-NPSDGNILSLYADL 251 (331)
Q Consensus 175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~--n~~~l~nLA~~L~~~~gd~ekAee~~erALel-dP~d~~al~~yA~l 251 (331)
....+|+|..+.|+.++|++.|+.+++.+|. +..+..+|...|.+ .+.|.++...+.|=-.+ -|+.+.+-++-|.+
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe-lq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLE-LQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh-cCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 3567999999999999999999999998875 56688899888776 89999998888875332 25556666666665
Q ss_pred HHHHcCCH---------------HHHHHHHHHHHHhCCCCHHHHH
Q 020094 252 IWQAHKDA---------------SRAESYFDQAVKSAPDDCYVLA 281 (331)
Q Consensus 252 l~~~~Gd~---------------deA~~yfekAL~ldP~d~~vl~ 281 (331)
..+..++. ..|++.+.||++.+|..+..+.
T Consensus 340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 55534331 2467889999999997775543
No 246
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.096 Score=55.08 Aligned_cols=113 Identities=16% Similarity=0.063 Sum_probs=91.8
Q ss_pred hHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------HHHH
Q 020094 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY------ADLI 252 (331)
Q Consensus 179 ~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~y------A~ll 252 (331)
+.-.+...+....+...+..++..||+++....+||.++......+.-+..+.+.+....|+|..++..+ +.++
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 152 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYL 152 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHH
Confidence 3445555677788999999999999999999999999987755667778888888999999999988666 4544
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020094 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGD 292 (331)
Q Consensus 253 ~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~ 292 (331)
-. .++..++..++.+++.+.|++..+...+........+
T Consensus 153 ~~-l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs 191 (620)
T COG3914 153 KL-LGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCS 191 (620)
T ss_pred HH-hccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhcc
Confidence 44 8999999999999999999998887777666433333
No 247
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.64 E-value=0.02 Score=33.51 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020094 245 LSLYADLIWQAHKDASRAESYFDQAVKSAP 274 (331)
Q Consensus 245 l~~yA~ll~~~~Gd~deA~~yfekAL~ldP 274 (331)
+..++.+++. .+++++|+.+|+++++++|
T Consensus 4 ~~~~a~~~~~-~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLK-LGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHH-HhhHHHHHHHHHHHHccCC
Confidence 3445555554 5555555555555555554
No 248
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.56 E-value=0.31 Score=45.73 Aligned_cols=109 Identities=13% Similarity=0.038 Sum_probs=81.8
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcC-----
Q 020094 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEV---RGDFAKAEELCGRAILANPSDG-NILSLYADLIWQAHK----- 257 (331)
Q Consensus 187 gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~---~gd~ekAee~~erALeldP~d~-~al~~yA~ll~~~~G----- 257 (331)
.+..+|..+|+ ...+..++.+.++||.++..- ..|+.+|..+|++|.+..-..+ .+...++..+. .|
T Consensus 91 ~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~--~g~~~~~ 166 (292)
T COG0790 91 RDKTKAADWYR--CAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYL--SGLQALA 166 (292)
T ss_pred ccHHHHHHHHH--HHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH--cChhhhc
Confidence 35788999999 556778899999999887652 3489999999999999865543 33445555444 34
Q ss_pred ---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCchHHHHhhh
Q 020094 258 ---DASRAESYFDQAVKSAPDDCYVLASYAKFLWDA----GDDEEEEQDNE 301 (331)
Q Consensus 258 ---d~deA~~yfekAL~ldP~d~~vl~~LA~~L~~l----G~~eEa~~~~~ 301 (331)
+...|+.+|.+|.... +......++.+|..- .+.++|..+++
T Consensus 167 ~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~ 215 (292)
T COG0790 167 VAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYK 215 (292)
T ss_pred ccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHH
Confidence 3448999999998876 778889999888653 36777877776
No 249
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.52 E-value=0.028 Score=35.18 Aligned_cols=30 Identities=30% Similarity=0.422 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020094 245 LSLYADLIWQAHKDASRAESYFDQAVKSAPD 275 (331)
Q Consensus 245 l~~yA~ll~~~~Gd~deA~~yfekAL~ldP~ 275 (331)
++.+|.++.. .|++++|+.+|+++++..|+
T Consensus 3 ~~~~a~~~~~-~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYK-LGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHH-HCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHH-ccCHHHHHHHHHHHHHHCcC
Confidence 4445555554 55555555555555555553
No 250
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.1 Score=50.16 Aligned_cols=91 Identities=15% Similarity=0.176 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC----------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020094 209 LLGNYARFLKEVRGDFAKAEELCGRAILA--------NPS----------DGNILSLYADLIWQAHKDASRAESYFDQAV 270 (331)
Q Consensus 209 ~l~nLA~~L~~~~gd~ekAee~~erALel--------dP~----------d~~al~~yA~ll~~~~Gd~deA~~yfekAL 270 (331)
++..-|+-++. .++|++|...|+.||-. .|. ....+.+|+.++.. .++|-++++.....+
T Consensus 180 ~l~q~GN~lfk-~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~-~~e~yevleh~seiL 257 (329)
T KOG0545|consen 180 VLHQEGNRLFK-LGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLK-KEEYYEVLEHCSEIL 257 (329)
T ss_pred HHHHhhhhhhh-hccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhh-HHHHHHHHHHHHHHH
Confidence 34555666666 89999999999998743 344 33456688888888 999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 271 KSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 271 ~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
..+|.|.-+|+..|.+....=+..||..++.
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~ 288 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQ 288 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 9999999999999999999889888887765
No 251
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.48 E-value=0.087 Score=53.77 Aligned_cols=120 Identities=7% Similarity=-0.010 Sum_probs=88.9
Q ss_pred ccccchHHHHHhCCCcHHHHHHHHHHHHhC----CCCHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CC
Q 020094 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEAN----PGNALL--LGNYARFLKEVRGDFAKAEELCGRAILANP------SD 241 (331)
Q Consensus 174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~~n----P~n~~~--l~nLA~~L~~~~gd~ekAee~~erALeldP------~d 241 (331)
.-..|++.++.-.++++.|.++|++.+.+. ....++ -+.||..+.. ..++++|+.|+.|-+.+.- ..
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl-l~e~~kAI~Yh~rHLaIAqeL~DriGe 314 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL-LKEVQKAITYHQRHLAIAQELEDRIGE 314 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 347899999999999999999999876653 333343 4556777665 8899999999998776542 23
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC-CHHHHHHHHHHHHHcCCchH
Q 020094 242 GNILSLYADLIWQAHKDASRAESYFDQAVKSA-----PD-DCYVLASYAKFLWDAGDDEE 295 (331)
Q Consensus 242 ~~al~~yA~ll~~~~Gd~deA~~yfekAL~ld-----P~-d~~vl~~LA~~L~~lG~~eE 295 (331)
..+.+.++..+-. .|..++|+.+.++.+++. +. ......++......+|...-
T Consensus 315 ~RacwSLgna~~a-lg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 315 LRACWSLGNAFNA-LGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDS 373 (639)
T ss_pred HHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcc
Confidence 4555578777776 999999999999988873 32 33466788888888886543
No 252
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.078 Score=52.59 Aligned_cols=93 Identities=15% Similarity=0.004 Sum_probs=78.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094 211 GNYARFLKEVRGDFAKAEELCGRAILANPSD----GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKF 286 (331)
Q Consensus 211 ~nLA~~L~~~~gd~ekAee~~erALeldP~d----~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~ 286 (331)
---|..++. ..+|..|+..|-+.|+..-.| +..|.+.|.+.+. .|+|-.|+.-..+|+.++|.+.-+++.=|.|
T Consensus 85 KeeGN~~fK-~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~-l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 85 KEEGNEYFK-EKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY-LGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHhHHHHH-hhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 334666555 889999999999999886554 4556667777777 8999999999999999999999999999999
Q ss_pred HHHcCCchHHHHhhhhhhc
Q 020094 287 LWDAGDDEEEEQDNEESQH 305 (331)
Q Consensus 287 L~~lG~~eEa~~~~~~~~~ 305 (331)
+..++++.++-.+|+|..+
T Consensus 163 ~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 9999998888888886654
No 253
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.40 E-value=0.2 Score=46.38 Aligned_cols=119 Identities=21% Similarity=0.126 Sum_probs=79.1
Q ss_pred hHHHHHhC-CCcHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHH
Q 020094 179 NNNYSNNN-HGSSSTDAYYEKMIEANPGNALL---LGNYARFLKEVRGDFAKAEELCGRAILANPSDG----NILSLYAD 250 (331)
Q Consensus 179 ~A~~y~s~-gd~ekA~e~yerAL~~nP~n~~~---l~nLA~~L~~~~gd~ekAee~~erALeldP~d~----~al~~yA~ 250 (331)
|..+-... -+..+.....++.+..||.+..+ ...+|....+ .+++++|+..++.++.. |.|. .+-.+++.
T Consensus 57 Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve-~~~~d~A~aqL~~~l~~-t~De~lk~l~~lRLAr 134 (207)
T COG2976 57 YQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVE-ANNLDKAEAQLKQALAQ-TKDENLKALAALRLAR 134 (207)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHcc-chhHHHHHHHHHHHHH
Confidence 34443333 23347777778888888777554 3456777666 88888888888888853 3332 23335777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 251 ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
+... ++++|+|+..+..... +.-...+....|.+|...|+-.+|.+-++
T Consensus 135 vq~q-~~k~D~AL~~L~t~~~-~~w~~~~~elrGDill~kg~k~~Ar~ay~ 183 (207)
T COG2976 135 VQLQ-QKKADAALKTLDTIKE-ESWAAIVAELRGDILLAKGDKQEARAAYE 183 (207)
T ss_pred HHHH-hhhHHHHHHHHhcccc-ccHHHHHHHHhhhHHHHcCchHHHHHHHH
Confidence 7787 8888888887754422 11234455667888888888888887776
No 254
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.37 E-value=0.078 Score=38.80 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 020094 209 LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNIL 245 (331)
Q Consensus 209 ~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al 245 (331)
.++.+|...+. .|+|.+|.++++.+++.+|+|..+.
T Consensus 3 ~lY~lAig~yk-l~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 3 CLYYLAIGHYK-LGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hHHHHHHHHHH-hhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 34555555444 7777777777777777777777776
No 255
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.36 E-value=0.029 Score=32.78 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020094 208 LLLGNYARFLKEVRGDFAKAEELCGRAILANPS 240 (331)
Q Consensus 208 ~~l~nLA~~L~~~~gd~ekAee~~erALeldP~ 240 (331)
.++..+|.++.. .+++++|+.+|+++++++|+
T Consensus 2 ~~~~~~a~~~~~-~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLK-LGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHH-HhhHHHHHHHHHHHHccCCC
Confidence 345666766555 77788888888888877775
No 256
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.32 E-value=0.091 Score=54.01 Aligned_cols=117 Identities=16% Similarity=0.080 Sum_probs=83.3
Q ss_pred CCcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHH
Q 020094 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN----ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD-GNIL 245 (331)
Q Consensus 171 g~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n----~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d-~~al 245 (331)
.+.+|...-|+++...++.++|+++|++++.....- ...++.++..+.. +.|+++|.+++.+.++.+.=. +.+.
T Consensus 265 ~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~-~~~w~~A~~~f~~L~~~s~WSka~Y~ 343 (468)
T PF10300_consen 265 NSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF-QHDWEEAAEYFLRLLKESKWSKAFYA 343 (468)
T ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH-HchHHHHHHHHHHHHhccccHHHHHH
Confidence 677889999999999999999999999998543332 3345667777554 899999999999999976543 3333
Q ss_pred HHHHHHHHHHcCCH-------HHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHH
Q 020094 246 SLYADLIWQAHKDA-------SRAESYFDQAVKSA--------PDDCYVLASYAKFLWD 289 (331)
Q Consensus 246 ~~yA~ll~~~~Gd~-------deA~~yfekAL~ld--------P~d~~vl~~LA~~L~~ 289 (331)
+..|.++.+ .++. ++|..+|+++-.+- |-+..+......+..+
T Consensus 344 Y~~a~c~~~-l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~~~~~ 401 (468)
T PF10300_consen 344 YLAAACLLM-LGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQKYEKQ 401 (468)
T ss_pred HHHHHHHHh-hccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHhc
Confidence 344445555 8888 88888888776553 3344555555444444
No 257
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.25 E-value=0.038 Score=36.51 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=11.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 020094 246 SLYADLIWQAHKDASRAESYFDQA 269 (331)
Q Consensus 246 ~~yA~ll~~~~Gd~deA~~yfekA 269 (331)
.++|.++.. .|++++|+.+|+++
T Consensus 3 ~~Lg~~~~~-~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 3 NNLGRIYRQ-QGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHH-CT-HHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHH
Confidence 344444444 55555555555553
No 258
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.23 E-value=0.007 Score=59.88 Aligned_cols=81 Identities=25% Similarity=0.172 Sum_probs=71.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHh
Q 020094 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQD 299 (331)
Q Consensus 220 ~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~ 299 (331)
..|+++.|++.|-+||+++|..+..+...+-++.. .++...|++-+..|+.++|+.+.-|-..+.+...+|++++|..+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lk-l~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLK-LKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeee-ccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 47999999999999999999999999999999988 99999999999999999998877666667777778888888765
Q ss_pred hh
Q 020094 300 NE 301 (331)
Q Consensus 300 ~~ 301 (331)
++
T Consensus 205 l~ 206 (377)
T KOG1308|consen 205 LA 206 (377)
T ss_pred HH
Confidence 54
No 259
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.22 E-value=0.038 Score=36.47 Aligned_cols=24 Identities=38% Similarity=0.637 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 020094 210 LGNYARFLKEVRGDFAKAEELCGRA 234 (331)
Q Consensus 210 l~nLA~~L~~~~gd~ekAee~~erA 234 (331)
+.+||.++.. .|++++|+++|+++
T Consensus 2 l~~Lg~~~~~-~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQ-QGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHH-CT-HHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 4455555443 66666666666663
No 260
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.19 E-value=0.35 Score=44.81 Aligned_cols=101 Identities=19% Similarity=0.202 Sum_probs=68.8
Q ss_pred CCcHHHHHHHHHHHHh----CCCC---HHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCCC------CHHHHH
Q 020094 187 HGSSSTDAYYEKMIEA----NPGN---ALLLGNYARFLKEVRGD-------FAKAEELCGRAILANPS------DGNILS 246 (331)
Q Consensus 187 gd~ekA~e~yerAL~~----nP~n---~~~l~nLA~~L~~~~gd-------~ekAee~~erALeldP~------d~~al~ 246 (331)
..++.|++.|.-||.. ..+. +.++..+|+++-. .++ +.+|.+.|++|++.... ...+++
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~-~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRD-LGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc-cCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 4678888888776653 2222 5566777888554 666 45688888888876543 346666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Q 020094 247 LYADLIWQAHKDASRAESYFDQAVKSAPDD-CYVLASYAKFLWD 289 (331)
Q Consensus 247 ~yA~ll~~~~Gd~deA~~yfekAL~ldP~d-~~vl~~LA~~L~~ 289 (331)
.+|.+.++ .|++++|.++|.+++..-..+ ...+.++|.=+|+
T Consensus 170 LigeL~rr-lg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~w~ 212 (214)
T PF09986_consen 170 LIGELNRR-LGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQWQ 212 (214)
T ss_pred HHHHHHHH-hCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Confidence 77777777 999999999999999874422 2355666655553
No 261
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.18 E-value=0.99 Score=40.36 Aligned_cols=111 Identities=20% Similarity=0.114 Sum_probs=83.4
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 020094 182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR 261 (331)
Q Consensus 182 ~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~de 261 (331)
+-...++.++++..+.-+--+.|+.+++-..-|.++- +.+++.+|+.+++.+....|..+.+...++.+++. .+|.+
T Consensus 19 ~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i-~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~-~~D~~- 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHI-VRGDWDDALRLLRELEERAPGFPYAKALLALCLYA-LGDPS- 95 (160)
T ss_pred HHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH-cCChH-
Confidence 3445568899999999999999999999998888854 49999999999999999999999999999999887 77743
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020094 262 AESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEE 297 (331)
Q Consensus 262 A~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~ 297 (331)
=..|-.++++..+ |+.+.. +...+....+...+.
T Consensus 96 Wr~~A~evle~~~-d~~a~~-Lv~~Ll~~~~~~~a~ 129 (160)
T PF09613_consen 96 WRRYADEVLESGA-DPDARA-LVRALLARADLEPAH 129 (160)
T ss_pred HHHHHHHHHhcCC-ChHHHH-HHHHHHHhccccchh
Confidence 3344555666655 555544 444444444444443
No 262
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.15 E-value=0.27 Score=47.03 Aligned_cols=81 Identities=14% Similarity=0.039 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 020094 208 LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG---NILSLYADLIWQAHKDASRAESYFDQAVKSAPDD---CYVLA 281 (331)
Q Consensus 208 ~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~---~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d---~~vl~ 281 (331)
..|++-|... +..|++++|+.+|+.+....|..+ .++..++-..++ .+++++|+.++++-+.+.|.+ .++++
T Consensus 35 ~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk-~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 35 SELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK-NGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 3344444442 348999999999999999998755 677778888888 999999999999999999844 56777
Q ss_pred HHHHHHHHc
Q 020094 282 SYAKFLWDA 290 (331)
Q Consensus 282 ~LA~~L~~l 290 (331)
-.+..+...
T Consensus 113 lkgLs~~~~ 121 (254)
T COG4105 113 LKGLSYFFQ 121 (254)
T ss_pred HHHHHHhcc
Confidence 777776543
No 263
>PRK10941 hypothetical protein; Provisional
Probab=95.14 E-value=0.14 Score=49.13 Aligned_cols=71 Identities=7% Similarity=-0.084 Sum_probs=65.9
Q ss_pred cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020094 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILS 246 (331)
Q Consensus 175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~ 246 (331)
+..|+-..|...+++++|+.+.++++..+|+++.-+..-|.++.. .+.+..|..-++.-|+..|+++.+-.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~q-L~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQ-LDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 477888899999999999999999999999999999999988666 99999999999999999999998873
No 264
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.05 E-value=0.17 Score=52.97 Aligned_cols=116 Identities=20% Similarity=0.116 Sum_probs=80.7
Q ss_pred CCcccccchHHHHHhC-----CCcHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHH---cC-CHHHHHHHHHHHHH
Q 020094 171 GGSGFSGSNNNYSNNN-----HGSSSTDAYYEKMIE-----ANPGNALLLGNYARFLKEV---RG-DFAKAEELCGRAIL 236 (331)
Q Consensus 171 g~~~~~~N~A~~y~s~-----gd~ekA~e~yerAL~-----~nP~n~~~l~nLA~~L~~~---~g-d~ekAee~~erALe 236 (331)
|+..-..+++.+|..- .+.++|+.+|+++.. +.-.++.+.+.+|.++... .. |+.+|..+|.+|.+
T Consensus 242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~ 321 (552)
T KOG1550|consen 242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE 321 (552)
T ss_pred cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence 5555566666666655 578999999998877 1122556777788776541 22 78889999999998
Q ss_pred hCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020094 237 ANPSDGNILSLYADLIWQAH--KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290 (331)
Q Consensus 237 ldP~d~~al~~yA~ll~~~~--Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~l 290 (331)
+...++..+ ++.++.... .++.+|..||.+|.+. -+..+++.++.+|..-
T Consensus 322 ~g~~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G 373 (552)
T KOG1550|consen 322 LGNPDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELG 373 (552)
T ss_pred cCCchHHHH--HHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhC
Confidence 777555544 666665533 4577999999988764 4667778888877754
No 265
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=95.02 E-value=0.074 Score=55.57 Aligned_cols=89 Identities=27% Similarity=0.143 Sum_probs=77.4
Q ss_pred CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 020094 188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEV--RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESY 265 (331)
Q Consensus 188 d~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~--~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~y 265 (331)
....|+..|.++++.-|+...++.++|.++.++ .++.--|+.-+..|+++||-...+++.++.++.+ .+++.+|+.+
T Consensus 389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~e-l~r~~eal~~ 467 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNE-LTRYLEALSC 467 (758)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHH-HhhHHHhhhh
Confidence 346788999999999999999999999886552 3567779999999999999999999999999998 9999999999
Q ss_pred HHHHHHhCCCCH
Q 020094 266 FDQAVKSAPDDC 277 (331)
Q Consensus 266 fekAL~ldP~d~ 277 (331)
...+....|.+.
T Consensus 468 ~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 468 HWALQMSFPTDV 479 (758)
T ss_pred HHHHhhcCchhh
Confidence 988888888444
No 266
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.02 E-value=0.029 Score=53.26 Aligned_cols=64 Identities=16% Similarity=0.198 Sum_probs=45.6
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 020094 180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNI 244 (331)
Q Consensus 180 A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~a 244 (331)
|......++.+.|.+.|.+++++.|....-|+.+|.+. ++.|+++.|.+.|++.+++||.|-..
T Consensus 2 a~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~-ekag~~daAa~a~~~~L~ldp~D~~g 65 (287)
T COG4976 2 AYMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYT-EKAGEFDAAAAAYEEVLELDPEDHGG 65 (287)
T ss_pred cchhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhh-hhcccHHHHHHHHHHHHcCCcccccc
Confidence 34455667777777777777777777777777777663 44777777777777777777765543
No 267
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.88 E-value=0.059 Score=33.67 Aligned_cols=31 Identities=32% Similarity=0.352 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020094 209 LLGNYARFLKEVRGDFAKAEELCGRAILANPS 240 (331)
Q Consensus 209 ~l~nLA~~L~~~~gd~ekAee~~erALeldP~ 240 (331)
+++.+|.++.. .|++++|+++|+++++..|+
T Consensus 2 a~~~~a~~~~~-~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYK-LGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHH-HCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHH-ccCHHHHHHHHHHHHHHCcC
Confidence 45666766554 77777777777777777775
No 268
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.86 E-value=0.064 Score=55.61 Aligned_cols=119 Identities=10% Similarity=0.032 Sum_probs=97.0
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHH
Q 020094 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRA-ILANPS--------DGNILSLYADL 251 (331)
Q Consensus 181 ~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erA-LeldP~--------d~~al~~yA~l 251 (331)
++|....+...+..-.+-++.+.-+.+..+..-+++.|. .|++.+|.+++.+. |...|. -+.+|++++-+
T Consensus 214 r~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~-~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcI 292 (696)
T KOG2471|consen 214 RFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYA-HGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCI 292 (696)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHH-hcchHHHHHHHHhcccccccCccccchhhhheeecCcceE
Confidence 455556666777777777777778889998888888776 99999999988765 555665 56778889888
Q ss_pred HHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 252 IWQAHKDASRAESYFDQAVKS------------------APDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 252 l~~~~Gd~deA~~yfekAL~l------------------dP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
.|. .+.|..+..+|.+|+.. ..+.++++|+.|..|...|+.-+|..++.
T Consensus 293 h~~-~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~ 359 (696)
T KOG2471|consen 293 HYQ-LGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQ 359 (696)
T ss_pred eee-hhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHH
Confidence 888 99999999999999961 33678899999999999999999887765
No 269
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.80 E-value=0.27 Score=46.98 Aligned_cols=111 Identities=18% Similarity=0.085 Sum_probs=67.8
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHH------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHH
Q 020094 180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLL------GNYARFLKEVRGDFAKAEELCGRAILANPSDG------NILSL 247 (331)
Q Consensus 180 A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l------~nLA~~L~~~~gd~ekAee~~erALeldP~d~------~al~~ 247 (331)
+.+|.+. +-++|..+++++|++.-+-..+. ..+|.++..-..++++|+.+|++|-+-.-.+- .++..
T Consensus 81 ~~cykk~-~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lK 159 (288)
T KOG1586|consen 81 ANCYKKV-DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLK 159 (288)
T ss_pred HHHhhcc-ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHH
Confidence 3444444 77888888888888766544443 36676654434778888888888876544321 22223
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCC
Q 020094 248 YADLIWQAHKDASRAESYFDQAVKSAPDDCY-------VLASYAKFLWDAGD 292 (331)
Q Consensus 248 yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~-------vl~~LA~~L~~lG~ 292 (331)
.+..--+ .++|.+|+..|++.....-++.- .++..+.|+....+
T Consensus 160 vA~yaa~-leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D 210 (288)
T KOG1586|consen 160 VAQYAAQ-LEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKAD 210 (288)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhccc
Confidence 3343444 67888888888887776555543 33444555555444
No 270
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.77 E-value=0.19 Score=36.78 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020094 243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAK 285 (331)
Q Consensus 243 ~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~ 285 (331)
++++.+|..++. .|+|++|..+.+++++.+|+|..+..-...
T Consensus 2 d~lY~lAig~yk-l~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 2 DCLYYLAIGHYK-LGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hhHHHHHHHHHH-hhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 356678888888 999999999999999999999877544433
No 271
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.75 E-value=0.72 Score=46.98 Aligned_cols=97 Identities=13% Similarity=-0.015 Sum_probs=67.2
Q ss_pred CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l 251 (331)
-++...--|+.-.-.|+|+.|..-|+-++. +|..-.+-..=-++-.+.+|+++-|.+|.++|-.+.|+-+.++......
T Consensus 119 epLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~ 197 (531)
T COG3898 119 EPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEA 197 (531)
T ss_pred hHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence 344444445566667999999999987765 5554332111011223357999999999999999999988888777677
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 020094 252 IWQAHKDASRAESYFDQAV 270 (331)
Q Consensus 252 l~~~~Gd~deA~~yfekAL 270 (331)
... .||++.|+++++...
T Consensus 198 r~~-~gdWd~AlkLvd~~~ 215 (531)
T COG3898 198 RCA-AGDWDGALKLVDAQR 215 (531)
T ss_pred HHh-cCChHHHHHHHHHHH
Confidence 777 888888888776443
No 272
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.69 E-value=0.39 Score=52.70 Aligned_cols=108 Identities=16% Similarity=0.095 Sum_probs=81.4
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 020094 180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA 259 (331)
Q Consensus 180 A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~ 259 (331)
|-.+.+.|..++|..+++..-..-+++...+-.+-.++.+ .+++++|..+|++|++.+|. -..+..+-..+-+ .+.|
T Consensus 50 aLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d-~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR-~~~y 126 (932)
T KOG2053|consen 50 ALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRD-LGKLDEAVHLYERANQKYPS-EELLYHLFMAYVR-EKSY 126 (932)
T ss_pred HHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHH-HhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHH-HHHH
Confidence 4566788999999988887777777777777666666544 99999999999999999998 5555455555555 7777
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020094 260 SRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290 (331)
Q Consensus 260 deA~~yfekAL~ldP~d~~vl~~LA~~L~~l 290 (331)
.+-.+.--+..+..|++++.+.+..-++...
T Consensus 127 k~qQkaa~~LyK~~pk~~yyfWsV~Slilqs 157 (932)
T KOG2053|consen 127 KKQQKAALQLYKNFPKRAYYFWSVISLILQS 157 (932)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHHHHHHh
Confidence 7777777777778998887666665555543
No 273
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=94.61 E-value=0.12 Score=47.89 Aligned_cols=62 Identities=23% Similarity=0.141 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094 227 AEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD 289 (331)
Q Consensus 227 Aee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~ 289 (331)
|+.||.+|+.+.|.++..++.+|.+... .++.=+|+-||-|++...--...+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~-~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASY-QGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHH-TT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhcc-ccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 4556666666666666666666665555 5666666666666664433345555666666555
No 274
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=94.56 E-value=0.063 Score=56.69 Aligned_cols=115 Identities=9% Similarity=-0.052 Sum_probs=89.5
Q ss_pred ccccchHHHHHhC-CCcHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020094 174 GFSGSNNNYSNNN-HGSSSTDAYYEKMIEANPGNAL--LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 174 ~~~~N~A~~y~s~-gd~ekA~e~yerAL~~nP~n~~--~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ 250 (331)
-...|+|.+|.++ |+..+|..|+..++-..|.... ++..+|.+|++ .|...+|.-++.-|+.-.|....-++.++.
T Consensus 213 w~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~R-aG~sadA~iILhAA~~dA~~~t~n~y~l~~ 291 (886)
T KOG4507|consen 213 WVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHR-AGFSADAAVILHAALDDADFFTSNYYTLGN 291 (886)
T ss_pred HHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHH-cccccchhheeehhccCCccccccceeHHH
Confidence 3477888888877 7889999999999988665433 56788999887 999999999999999888876666677888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020094 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290 (331)
Q Consensus 251 ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~l 290 (331)
++.+ .+++...+.+|..|.+.+|.-.......+.+....
T Consensus 292 i~am-l~~~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~ 330 (886)
T KOG4507|consen 292 IYAM-LGEYNHSVLCYDHALQARPGFEQAIKQRKHAISCQ 330 (886)
T ss_pred HHHH-HhhhhhhhhhhhhhhccCcchhHHHHHHHHHHHHH
Confidence 8888 99999999999999999994433333344333333
No 275
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.54 E-value=0.61 Score=41.69 Aligned_cols=72 Identities=24% Similarity=0.141 Sum_probs=65.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 020094 221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDD 293 (331)
Q Consensus 221 ~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~ 293 (331)
.++.+.++..+.-.-.+.|+.+.+-..-++++.. .|++.+|+.+|+.+.+..|..+++-.-++.||..+++.
T Consensus 23 ~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~-r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVLRPEFPELDLFDGWLHIV-RGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred cCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-hCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 6789999999999999999999999777777776 99999999999999999999999999999999988874
No 276
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.47 E-value=0.36 Score=44.75 Aligned_cols=54 Identities=24% Similarity=0.199 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcCCHHHH
Q 020094 206 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPS----DGNILSLYADLIWQAHKDASRA 262 (331)
Q Consensus 206 n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~----d~~al~~yA~ll~~~~Gd~deA 262 (331)
+++..+.||.++ . ..|.++|+++|.+++++.+. |+.++..++-+++. ++++++|
T Consensus 140 t~elq~aLAtyY-~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~-~~~~e~A 197 (203)
T PF11207_consen 140 TAELQYALATYY-T-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK-LKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHH-H-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH-hcchhhh
Confidence 444444444442 1 34555555555555544332 34444444444444 4444444
No 277
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.41 E-value=0.57 Score=45.77 Aligned_cols=126 Identities=11% Similarity=-0.022 Sum_probs=89.2
Q ss_pred CCcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020094 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYAR--FLKEVRGDFAKAEELCGRAILANPSDGNILSLY 248 (331)
Q Consensus 171 g~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~--~L~~~~gd~ekAee~~erALeldP~d~~al~~y 248 (331)
.+.--...||.+|...|+.+.|...+...-....+..... .-+. ++.. ..+..+ ..-+++.+..||+|..+.+.+
T Consensus 166 ~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~-l~a~i~ll~q-aa~~~~-~~~l~~~~aadPdd~~aa~~l 242 (304)
T COG3118 166 ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHG-LQAQIELLEQ-AAATPE-IQDLQRRLAADPDDVEAALAL 242 (304)
T ss_pred ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHH-HHHHHHHHHH-HhcCCC-HHHHHHHHHhCCCCHHHHHHH
Confidence 3445567799999999999999988766433333322222 1221 1111 222222 245677788899999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCchHHHHhh
Q 020094 249 ADLIWQAHKDASRAESYFDQAVKSAP--DDCYVLASYAKFLWDAGDDEEEEQDN 300 (331)
Q Consensus 249 A~ll~~~~Gd~deA~~yfekAL~ldP--~d~~vl~~LA~~L~~lG~~eEa~~~~ 300 (331)
+..+.. .|+.++|...+-..+..|- +|..+.-.+-.++...|..+..-..+
T Consensus 243 A~~~~~-~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 243 ADQLHL-VGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAY 295 (304)
T ss_pred HHHHHH-cCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999988 9999999999999999876 77888888988888888665554443
No 278
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.34 E-value=0.67 Score=40.75 Aligned_cols=90 Identities=16% Similarity=0.100 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 020094 192 TDAYYEKMIEANPGNALLLGNYARFLKEV--RGDFAKAEELCGRAIL-ANPS-DGNILSLYADLIWQAHKDASRAESYFD 267 (331)
Q Consensus 192 A~e~yerAL~~nP~n~~~l~nLA~~L~~~--~gd~ekAee~~erALe-ldP~-d~~al~~yA~ll~~~~Gd~deA~~yfe 267 (331)
..+-+.+.-...--.....++||+++-.. ..|..+.+.+++..++ ..|. .-++++.++.-++. .++|++|+.|.+
T Consensus 17 ~~e~~~rq~a~~~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yR-lkeY~~s~~yvd 95 (149)
T KOG3364|consen 17 GQEEILRQAARSDVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYR-LKEYSKSLRYVD 95 (149)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHH-HhhHHHHHHHHH
Confidence 33333333333333455677888886542 2356889999999997 5564 44556667777888 999999999999
Q ss_pred HHHHhCCCCHHHHHH
Q 020094 268 QAVKSAPDDCYVLAS 282 (331)
Q Consensus 268 kAL~ldP~d~~vl~~ 282 (331)
..++.+|+|..+..-
T Consensus 96 ~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 96 ALLETEPNNRQALEL 110 (149)
T ss_pred HHHhhCCCcHHHHHH
Confidence 999999998877543
No 279
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.20 E-value=0.63 Score=44.18 Aligned_cols=103 Identities=10% Similarity=-0.060 Sum_probs=77.5
Q ss_pred CcccccchHHHHHhCCCcHHHHHHHHHHHHh-CCC---------------------------------CHHHHHHHHHHH
Q 020094 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEA-NPG---------------------------------NALLLGNYARFL 217 (331)
Q Consensus 172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~-nP~---------------------------------n~~~l~nLA~~L 217 (331)
.+....-+|+++...|+..+|+..++..+.. ... .+.++..+|...
T Consensus 183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~ 262 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL 262 (352)
T ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence 4456777899999999999999999988881 111 123445556554
Q ss_pred HHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC----------------CHHHHHHHHHHHHHhCCC
Q 020094 218 KEVR------GDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK----------------DASRAESYFDQAVKSAPD 275 (331)
Q Consensus 218 ~~~~------gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~G----------------d~deA~~yfekAL~ldP~ 275 (331)
.. . .+.+.+..+|.+|++++|+...+|..++.++..... -...|+.+|-+++...+.
T Consensus 263 ~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 263 DE-LYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred Hh-hccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 44 4 778999999999999999999999988887655311 123588899999999887
No 280
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.20 E-value=0.6 Score=44.65 Aligned_cols=121 Identities=14% Similarity=0.050 Sum_probs=80.2
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhC---CCCHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHhCCCCHHHHH------HH
Q 020094 180 NNYSNNNHGSSSTDAYYEKMIEAN---PGNALLLGNYARF--LKEVRGDFAKAEELCGRAILANPSDGNILS------LY 248 (331)
Q Consensus 180 A~~y~s~gd~ekA~e~yerAL~~n---P~n~~~l~nLA~~--L~~~~gd~ekAee~~erALeldP~d~~al~------~y 248 (331)
|..|.-..++..|-..|.++.... .+--++.+.|..+ .+. ..+..+|..++++||++--+-..... .+
T Consensus 41 an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~i 119 (288)
T KOG1586|consen 41 ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEI 119 (288)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhH
Confidence 344455556666666666665542 1222233344322 133 67999999999999999877555443 56
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCchHHHHhhh
Q 020094 249 ADLIWQAHKDASRAESYFDQAVKSAPDDC------YVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 249 A~ll~~~~Gd~deA~~yfekAL~ldP~d~------~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
+.++-....++++|+.+|++|-+.-..+. ..+...+..-..++++++|...+|
T Consensus 120 aEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iye 178 (288)
T KOG1586|consen 120 AEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYE 178 (288)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665545899999999999988754221 245666777778889999988776
No 281
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.02 E-value=1.2 Score=44.40 Aligned_cols=116 Identities=16% Similarity=0.135 Sum_probs=86.9
Q ss_pred cchHHHHHhCCCcHHHHHHHHHHHHh--------------------------CCCCHHH---HHHHHHHHHHHcCCHHHH
Q 020094 177 GSNNNYSNNNHGSSSTDAYYEKMIEA--------------------------NPGNALL---LGNYARFLKEVRGDFAKA 227 (331)
Q Consensus 177 ~N~A~~y~s~gd~ekA~e~yerAL~~--------------------------nP~n~~~---l~nLA~~L~~~~gd~ekA 227 (331)
..++.++...|+++.|.++.+|||-. .+.|..+ ++.|...+.+ .|-+.-|
T Consensus 44 lqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~-RG~~rTA 122 (360)
T PF04910_consen 44 LQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR-RGCWRTA 122 (360)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh-cCcHHHH
Confidence 35788999999999999999888642 1233333 3344555544 8889999
Q ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCc
Q 020094 228 EELCGRAILANPS-DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPD-----DCYVLASYAKFLWDAGDD 293 (331)
Q Consensus 228 ee~~erALeldP~-d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~-----d~~vl~~LA~~L~~lG~~ 293 (331)
.++++-.+.+||. ||.......+.+..+.++++==+..++........ -+...++++.+++.+++.
T Consensus 123 lE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~ 194 (360)
T PF04910_consen 123 LEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKE 194 (360)
T ss_pred HHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCc
Confidence 9999999999998 99888778888877688888777777766553221 235678889999999988
No 282
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.94 E-value=0.39 Score=52.72 Aligned_cols=96 Identities=18% Similarity=0.230 Sum_probs=70.9
Q ss_pred cccchHHHHHhCCCcHHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020094 175 FSGSNNNYSNNNHGSSSTDAYYEKM----------IEANP----------GNALLLGNYARFLKEVRGDFAKAEELCGRA 234 (331)
Q Consensus 175 ~~~N~A~~y~s~gd~ekA~e~yerA----------L~~nP----------~n~~~l~nLA~~L~~~~gd~ekAee~~erA 234 (331)
-.+|||..+...++.+.|++||+++ |..+| .++.+|...|.++. ..|+.+.|+.+|..|
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlE-S~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLE-SVGEMDAALSFYSSA 938 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHh-cccchHHHHHHHHHh
Confidence 3789999999999999999999863 44455 34556666777764 489999988888876
Q ss_pred HH---------------------hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020094 235 IL---------------------ANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 235 Le---------------------ldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~l 272 (331)
-. ....|-.+-+.+|.-|-. .|++.+|+.+|.||-+.
T Consensus 939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn-~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 939 KDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYEN-DGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred hhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHH
Confidence 32 233455555567776665 89999999998877554
No 283
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.84 E-value=0.087 Score=50.06 Aligned_cols=63 Identities=21% Similarity=0.225 Sum_probs=54.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020094 214 ARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCY 278 (331)
Q Consensus 214 A~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~ 278 (331)
|..+.. .+|.+.|.+.|.+|+++.|.+..-|+.++..-.. .|+++.|.+.|++.++++|.|..
T Consensus 2 a~~~~~-~~D~~aaaely~qal~lap~w~~gwfR~g~~~ek-ag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 2 AYMLAE-SGDAEAAAELYNQALELAPEWAAGWFRLGEYTEK-AGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred cchhcc-cCChHHHHHHHHHHhhcCchhhhhhhhcchhhhh-cccHHHHHHHHHHHHcCCccccc
Confidence 344444 7899999999999999999999999888765555 99999999999999999997653
No 284
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.67 E-value=1.2 Score=46.86 Aligned_cols=112 Identities=13% Similarity=-0.024 Sum_probs=77.1
Q ss_pred CCcccccchHHHHHhCC-----CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHH
Q 020094 171 GGSGFSGSNNNYSNNNH-----GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVR--GDFAKAEELCGRAILANPSDGN 243 (331)
Q Consensus 171 g~~~~~~N~A~~y~s~g-----d~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~--gd~ekAee~~erALeldP~d~~ 243 (331)
|++.-.+.++.+|.... +++.|+.+|.++.... +++..+.+|.++.... .|+.+|.+||.+|.+..- ..
T Consensus 286 ~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~--~~ 361 (552)
T KOG1550|consen 286 GLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH--IL 361 (552)
T ss_pred cCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC--hH
Confidence 34444567888888843 6788999999886654 4555566676654433 568899999999998654 55
Q ss_pred HHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094 244 ILSLYADLIWQA---HKDASRAESYFDQAVKSAPDDCYVLASYAKFLW 288 (331)
Q Consensus 244 al~~yA~ll~~~---~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~ 288 (331)
+.+.++.++..- ..+..+|..+|++|.+.. +..+.+.++.++.
T Consensus 362 A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~ 407 (552)
T KOG1550|consen 362 AIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYE 407 (552)
T ss_pred HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHH
Confidence 554576665532 247899999999999998 3343444444444
No 285
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.59 E-value=0.57 Score=51.49 Aligned_cols=122 Identities=16% Similarity=0.137 Sum_probs=83.5
Q ss_pred chHHHHHhCCCcHHHHHHHHHHHHhCC------------------------CCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020094 178 SNNNYSNNNHGSSSTDAYYEKMIEANP------------------------GNALLLGNYARFLKEVRGDFAKAEELCGR 233 (331)
Q Consensus 178 N~A~~y~s~gd~ekA~e~yerAL~~nP------------------------~n~~~l~nLA~~L~~~~gd~ekAee~~er 233 (331)
-.|.+.-..|-.++|+.+|++.-+.+= +-...+++||..|.. .+|.+.|++||++
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea-r~Di~~AleyyEK 883 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA-RRDIEAALEYYEK 883 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh-hccHHHHHHHHHh
Confidence 345555666777777777776655331 123458899999766 8999999999997
Q ss_pred H----------HHhCCC----------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------
Q 020094 234 A----------ILANPS----------DGNILSLYADLIWQAHKDASRAESYFDQAVKS--------------------- 272 (331)
Q Consensus 234 A----------LeldP~----------d~~al~~yA~ll~~~~Gd~deA~~yfekAL~l--------------------- 272 (331)
+ +.-+|. |+..|.-.+. |.+..|+.+.|+.+|..|-+.
T Consensus 884 ~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgq-YlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~ 962 (1416)
T KOG3617|consen 884 AGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQ-YLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAE 962 (1416)
T ss_pred cCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHH-HHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHH
Confidence 5 333443 3333422333 444489999999999866433
Q ss_pred CCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 273 APDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 273 dP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
...|-.+.|.+|+.|.+.|+.-+|.+-+.
T Consensus 963 esgd~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 963 ESGDKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred hcccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 34667788999999999999888876443
No 286
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.50 E-value=0.2 Score=32.71 Aligned_cols=29 Identities=14% Similarity=0.127 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020094 243 NILSLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 243 ~al~~yA~ll~~~~Gd~deA~~yfekAL~l 272 (331)
.++.++|.++.. +|++++|+.++++++++
T Consensus 3 ~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRA-QGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHH-CT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-hhhcchhhHHHHHHHHH
Confidence 355667777776 77777777777777765
No 287
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=93.36 E-value=0.098 Score=51.69 Aligned_cols=81 Identities=10% Similarity=0.064 Sum_probs=69.9
Q ss_pred CCcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020094 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 171 g~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ 250 (331)
+..-+-..|+.+..+.+-|.+-...|.+++..+|.|.++|..-+.+-+...++.+.+...+.+++..||.+|.+|..|-.
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr 184 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFR 184 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence 45667778899999999999999999999999999999998655555556899999999999999999999999976654
Q ss_pred H
Q 020094 251 L 251 (331)
Q Consensus 251 l 251 (331)
+
T Consensus 185 ~ 185 (435)
T COG5191 185 M 185 (435)
T ss_pred H
Confidence 3
No 288
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.14 E-value=0.68 Score=48.94 Aligned_cols=115 Identities=17% Similarity=-0.013 Sum_probs=85.2
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 020094 187 HGSSSTDAYYEKMIEANPGNALLLGNY-ARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESY 265 (331)
Q Consensus 187 gd~ekA~e~yerAL~~nP~n~~~l~nL-A~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~y 265 (331)
+.-..++..+..-+.+++.++.++..+ -.++....++...+....+.++..||+++.+..+++..+......+.-+...
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 333556777777778899999986544 2222333677778899999999999999999999999988734445555555
Q ss_pred HHHHHHhCCCCHHHHHHH------HHHHHHcCCchHHHHhhh
Q 020094 266 FDQAVKSAPDDCYVLASY------AKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 266 fekAL~ldP~d~~vl~~L------A~~L~~lG~~eEa~~~~~ 301 (331)
-..+....|++..++..+ +..+.-+++..++....+
T Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 166 (620)
T COG3914 125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALE 166 (620)
T ss_pred HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 566999999999988887 777777777777765444
No 289
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.99 E-value=0.82 Score=41.00 Aligned_cols=24 Identities=4% Similarity=-0.097 Sum_probs=11.8
Q ss_pred chHHHHHhCCCcHHHHHHHHHHHH
Q 020094 178 SNNNYSNNNHGSSSTDAYYEKMIE 201 (331)
Q Consensus 178 N~A~~y~s~gd~ekA~e~yerAL~ 201 (331)
.+|++|.+.|++++|+++|.++..
T Consensus 41 ~l~~~~~~~Gd~~~A~k~y~~~~~ 64 (177)
T PF10602_consen 41 DLADHYCKIGDLEEALKAYSRARD 64 (177)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhh
Confidence 344455555555555555555443
No 290
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.96 E-value=2.4 Score=40.30 Aligned_cols=116 Identities=16% Similarity=0.054 Sum_probs=79.4
Q ss_pred HhCCCcHHHHHHHHHHHHhC-CCCHHH-------HHHHHHHHHHHcC-CHHHHHHHHHHHHHh----CC---C-------
Q 020094 184 NNNHGSSSTDAYYEKMIEAN-PGNALL-------LGNYARFLKEVRG-DFAKAEELCGRAILA----NP---S------- 240 (331)
Q Consensus 184 ~s~gd~ekA~e~yerAL~~n-P~n~~~-------l~nLA~~L~~~~g-d~ekAee~~erALel----dP---~------- 240 (331)
.+.|+++.|..+|.|+-... ..+|.. +++.|.-+.. .+ +++.|..++++|.++ .. .
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~-~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLS-KKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35689999999999987765 444444 4555555444 67 999999999999887 22 1
Q ss_pred CHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 241 DGNILSLYADLIWQAHKD---ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 241 d~~al~~yA~ll~~~~Gd---~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
...++..++..+.. .+. +++|+.+++.+-.-.|+.+.++.-.-.++.+.++.++.+..+.
T Consensus 83 r~~iL~~La~~~l~-~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~ 145 (278)
T PF08631_consen 83 RLSILRLLANAYLE-WDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILM 145 (278)
T ss_pred HHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHH
Confidence 12445556666665 444 5577788877877788878777555555555777777776665
No 291
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=92.95 E-value=2.3 Score=44.96 Aligned_cols=126 Identities=12% Similarity=0.083 Sum_probs=88.8
Q ss_pred cccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll 252 (331)
.+..-+|-.+-.+......|...|.+|=+.--.--.++..-|.+-+...+|++-|..+|+--++.-++.+..-..|..++
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFL 445 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 34455666677777778888888888755432222333322333333468888888888888888888888877888888
Q ss_pred HHHcCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHcCCchHHHHh
Q 020094 253 WQAHKDASRAESYFDQAVKS--AP-DDCYVLASYAKFLWDAGDDEEEEQD 299 (331)
Q Consensus 253 ~~~~Gd~deA~~yfekAL~l--dP-~d~~vl~~LA~~L~~lG~~eEa~~~ 299 (331)
.. .++-..|..+|++++.. .| ....+|...-.+..+.|+.+-.-+.
T Consensus 446 ~~-lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~l 494 (656)
T KOG1914|consen 446 SH-LNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKL 494 (656)
T ss_pred HH-hCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 77 88888888888888887 54 4457888888888888887655443
No 292
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=92.87 E-value=1.9 Score=45.43 Aligned_cols=127 Identities=17% Similarity=0.215 Sum_probs=93.9
Q ss_pred ccccchHHHHHhCCC---cHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020094 174 GFSGSNNNYSNNNHG---SSSTDAYYEKMIEANPGNA-LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYA 249 (331)
Q Consensus 174 ~~~~N~A~~y~s~gd---~ekA~e~yerAL~~nP~n~-~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA 249 (331)
.....|+++-...-+ +++-..+|++++.+.-.++ .++.+|-.+..+ ..-.+.|..+|.+|-+.--.--.++...|
T Consensus 329 ~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR-~eGlkaaR~iF~kaR~~~r~~hhVfVa~A 407 (656)
T KOG1914|consen 329 LLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRR-AEGLKAARKIFKKAREDKRTRHHVFVAAA 407 (656)
T ss_pred HHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHH-hhhHHHHHHHHHHHhhccCCcchhhHHHH
Confidence 344445555555544 7777888888888754443 355666666444 44578888899988775433334554455
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 250 DLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 250 ~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
..-|..+++.+-|.+.|+-.++..++++..-..+..+|..+++++.+...+|
T Consensus 408 ~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFE 459 (656)
T KOG1914|consen 408 LMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFE 459 (656)
T ss_pred HHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHH
Confidence 5555558999999999999999999999999999999999999999998887
No 293
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.75 E-value=2.5 Score=39.23 Aligned_cols=97 Identities=12% Similarity=0.092 Sum_probs=68.8
Q ss_pred cchHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n---~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~ 253 (331)
.-+|..+...+++++|+..++.++..--+. ..+...||.++.. ++.+++|...+.....-+-. +.+--..++++.
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q-~~k~D~AL~~L~t~~~~~w~-~~~~elrGDill 170 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ-QKKADAALKTLDTIKEESWA-AIVAELRGDILL 170 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH-hhhHHHHHHHHhccccccHH-HHHHHHhhhHHH
Confidence 346777888889999999998887643332 3345677788766 88889888887766553322 223335677777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC
Q 020094 254 QAHKDASRAESYFDQAVKSAPDD 276 (331)
Q Consensus 254 ~~~Gd~deA~~yfekAL~ldP~d 276 (331)
. .|+-++|+..|++|++.++.+
T Consensus 171 ~-kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 171 A-KGDKQEARAAYEKALESDASP 192 (207)
T ss_pred H-cCchHHHHHHHHHHHHccCCh
Confidence 6 899999999999999887533
No 294
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.53 E-value=0.32 Score=31.63 Aligned_cols=29 Identities=28% Similarity=0.335 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020094 208 LLLGNYARFLKEVRGDFAKAEELCGRAILA 237 (331)
Q Consensus 208 ~~l~nLA~~L~~~~gd~ekAee~~erALel 237 (331)
..+.++|.++.. .|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRA-QGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHH-CT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-hhhcchhhHHHHHHHHH
Confidence 456778888665 78888888888888765
No 295
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.52 E-value=1.6 Score=34.71 Aligned_cols=54 Identities=20% Similarity=0.169 Sum_probs=37.4
Q ss_pred HcCCHHHHHHHHHHHHHhCC----CC-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020094 220 VRGDFAKAEELCGRAILANP----SD-----GNILSLYADLIWQAHKDASRAESYFDQAVKSAP 274 (331)
Q Consensus 220 ~~gd~ekAee~~erALeldP----~d-----~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP 274 (331)
..+||..|.+.+.+.+.... .. ..++.+++.+... .|++++|+..+++|+++..
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHH
Confidence 36888888666666654422 12 3555567776776 8888888888888888865
No 296
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.36 E-value=1.5 Score=45.36 Aligned_cols=116 Identities=12% Similarity=0.059 Sum_probs=60.7
Q ss_pred HHHHHhCCC-cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHh---------CC---CCHHH
Q 020094 180 NNYSNNNHG-SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEE--LCGRAILA---------NP---SDGNI 244 (331)
Q Consensus 180 A~~y~s~gd-~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee--~~erALel---------dP---~d~~a 244 (331)
|.-|.+.|. .++|+..++.+++..|.+-..-+..-.+ ....|.+|.. .+-+.+.+ -| .+...
T Consensus 386 Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~f---vKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~ei 462 (549)
T PF07079_consen 386 AKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLF---VKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEI 462 (549)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHH---HHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHH
Confidence 444555554 6888888888888777765443221111 1222333221 11111111 11 12222
Q ss_pred HHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhh
Q 020094 245 LSLY--ADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDN 300 (331)
Q Consensus 245 l~~y--A~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~ 300 (331)
-+-+ |..++. +|+|.++.-|-.=..+++| .+.++.-+|.++....+++||-..+
T Consensus 463 an~LaDAEyLys-qgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l 518 (549)
T PF07079_consen 463 ANFLADAEYLYS-QGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYL 518 (549)
T ss_pred HHHHHHHHHHHh-cccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 2222 333454 6777777766666666777 6667777777777777776665443
No 297
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.32 E-value=2.1 Score=41.37 Aligned_cols=120 Identities=18% Similarity=0.131 Sum_probs=78.4
Q ss_pred hHHHHHhCCCcHHHHHHHHHHHHh-----CCCCHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHH
Q 020094 179 NNNYSNNNHGSSSTDAYYEKMIEA-----NPGNALLLGNYA-RFLKEVRGDFAKAEELCGRAILANPSDG------NILS 246 (331)
Q Consensus 179 ~A~~y~s~gd~ekA~e~yerAL~~-----nP~n~~~l~nLA-~~L~~~~gd~ekAee~~erALeldP~d~------~al~ 246 (331)
.+..+.....+.++..+|++|... .|+.+.....-| .++ + .-+.++|+++|++++.+--++. ..+.
T Consensus 77 aamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~l-e-nv~Pd~AlqlYqralavve~~dr~~ma~el~g 154 (308)
T KOG1585|consen 77 AAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKAL-E-NVKPDDALQLYQRALAVVEEDDRDQMAFELYG 154 (308)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh-h-cCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 455667778889999999999886 344443333333 342 3 5779999999999987643322 2233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh----C--CCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 247 LYADLIWQAHKDASRAESYFDQAVKS----A--PDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 247 ~yA~ll~~~~Gd~deA~~yfekAL~l----d--P~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
..+.++-. ..+|++|-..+.|-.-+ + |..+..+..+..++.-..++..+++.++
T Consensus 155 k~sr~lVr-l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r 214 (308)
T KOG1585|consen 155 KCSRVLVR-LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYR 214 (308)
T ss_pred HhhhHhhh-hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 34455555 77888888777764333 2 3445556666666677778989988887
No 298
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.22 E-value=3.5 Score=43.70 Aligned_cols=120 Identities=14% Similarity=0.160 Sum_probs=93.0
Q ss_pred cccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH---HHHHHHHHh--CCC-CHHHHH
Q 020094 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAE---ELCGRAILA--NPS-DGNILS 246 (331)
Q Consensus 173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAe---e~~erALel--dP~-d~~al~ 246 (331)
+..+.-+|.|-..+|++..|..+|++....-|+...+-...+....+ .++.+.+. +++...+.- ++. -...+.
T Consensus 366 ~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r-~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~ 444 (577)
T KOG1258|consen 366 PIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERR-KGNLEDANYKNELYSSIYEGKENNGILEKLYV 444 (577)
T ss_pred cHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHH-hcchhhhhHHHHHHHHhcccccCcchhHHHHH
Confidence 44566678888999999999999999999889998888888888666 88887777 333333321 111 234445
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 020094 247 LYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDD 293 (331)
Q Consensus 247 ~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~ 293 (331)
.++.+.+.-.++.+.|...+.+|+.+.|++-..+..+..+.....--
T Consensus 445 ~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 445 KFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence 67777777789999999999999999999999999998888877743
No 299
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=92.15 E-value=0.47 Score=43.87 Aligned_cols=62 Identities=19% Similarity=0.140 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094 192 TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 192 A~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~ 254 (331)
|+.||.+|+.+.|++...++++|.+... .++.-.|+-+|-|++...--.+.+..++..++-.
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~-~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASY-QGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHH-TT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhcc-ccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 7899999999999999999999988665 8999999999999987655467777777665554
No 300
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.13 E-value=2.4 Score=44.29 Aligned_cols=125 Identities=14% Similarity=-0.021 Sum_probs=96.4
Q ss_pred cchHHHHHhCC--CcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCH----HH
Q 020094 177 GSNNNYSNNNH--GSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILAN---PSDG----NI 244 (331)
Q Consensus 177 ~N~A~~y~s~g--d~ekA~e~yerAL~~nP~n---~~~l~nLA~~L~~~~gd~ekAee~~erALeld---P~d~----~a 244 (331)
.++|+.+...+ ++.+++.|.+..+...|.+ +.....+|.+++....+.+.|..++++|..+- |+.. ++
T Consensus 11 lGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a 90 (629)
T KOG2300|consen 11 LGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQA 90 (629)
T ss_pred HHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHH
Confidence 46788888888 8999999999998888764 44567889888888999999999999997664 4443 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCchHHHHhhh
Q 020094 245 LSLYADLIWQAHKDASRAESYFDQAVKSAPDDC----YVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 245 l~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~----~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
...++.++......+..|...+++|+++....+ ..++.++.+..-..+++-|...++
T Consensus 91 ~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 91 ASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLA 151 (629)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence 445677776645589999999999999977554 466777777777777777765543
No 301
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.88 E-value=2.7 Score=44.52 Aligned_cols=112 Identities=12% Similarity=0.112 Sum_probs=89.9
Q ss_pred CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 020094 188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFD 267 (331)
Q Consensus 188 d~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfe 267 (331)
+.+.+...|...|...|..-.+|-.||..-+. .|..+++.+.|+|+|+.-|.....|..|..++....++.+.=...|+
T Consensus 60 ~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~k-lg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe 138 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKYPLCYGYWKKFADYEYK-LGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFE 138 (577)
T ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 34788888999999999999999999988665 89999999999999999999999998888888776788888888899
Q ss_pred HHHHhCCC---CHHHHHHHHHHHHHcCCchHHHHhh
Q 020094 268 QAVKSAPD---DCYVLASYAKFLWDAGDDEEEEQDN 300 (331)
Q Consensus 268 kAL~ldP~---d~~vl~~LA~~L~~lG~~eEa~~~~ 300 (331)
+|+..... .+..|..+..+....++...--..+
T Consensus 139 ~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iy 174 (577)
T KOG1258|consen 139 RAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIY 174 (577)
T ss_pred HHHHhcccchhccHHHHHHHHHHhccccHHHHHHHH
Confidence 99888773 3557777777776666655554433
No 302
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=91.77 E-value=0.34 Score=50.86 Aligned_cols=80 Identities=18% Similarity=-0.015 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHh
Q 020094 222 GDFAKAEELCGRAILANPSDGNILSLYADLIWQA--HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQD 299 (331)
Q Consensus 222 gd~ekAee~~erALeldP~d~~al~~yA~ll~~~--~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~ 299 (331)
.....|+..|.++++.-|+....+.+++.++++. .++.-.|+.-.-.|+.++|-...+++.++.++..+++..||..+
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~ 467 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSC 467 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhh
Confidence 4467799999999999999999999999888763 46777888888899999999999999999999999999999865
Q ss_pred hh
Q 020094 300 NE 301 (331)
Q Consensus 300 ~~ 301 (331)
..
T Consensus 468 ~~ 469 (758)
T KOG1310|consen 468 HW 469 (758)
T ss_pred HH
Confidence 54
No 303
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=91.51 E-value=0.55 Score=28.72 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHH
Q 020094 225 AKAEELCGRAILANPSDGNIL 245 (331)
Q Consensus 225 ekAee~~erALeldP~d~~al 245 (331)
++|...|++++...|.++.+|
T Consensus 4 ~~~r~i~e~~l~~~~~~~~~W 24 (33)
T smart00386 4 ERARKIYERALEKFPKSVELW 24 (33)
T ss_pred HHHHHHHHHHHHHCCCChHHH
Confidence 333334444444444444443
No 304
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=90.95 E-value=0.55 Score=28.71 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094 257 KDASRAESYFDQAVKSAPDDCYVLASYAKFLW 288 (331)
Q Consensus 257 Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~ 288 (331)
|++++|...|++++...|.+..+|..++.+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 56889999999999999999999999987653
No 305
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.89 E-value=2.2 Score=41.43 Aligned_cols=90 Identities=18% Similarity=0.255 Sum_probs=72.4
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020094 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF 266 (331)
Q Consensus 187 gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yf 266 (331)
.+|.++..||+.++..+.. -.+|.++-+.+|.+||.|..||...-.++....-+..+-+.|+
T Consensus 40 e~fr~~m~YfRAI~~~~E~------------------S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l 101 (318)
T KOG0530|consen 40 EDFRDVMDYFRAIIAKNEK------------------SPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYL 101 (318)
T ss_pred hhHHHHHHHHHHHHhcccc------------------CHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5778888888766554443 3556677788899999999999555555555466889999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCch
Q 020094 267 DQAVKSAPDDCYVLASYAKFLWDAGDDE 294 (331)
Q Consensus 267 ekAL~ldP~d~~vl~~LA~~L~~lG~~e 294 (331)
.+.++-+|+|..+|-....+...+++..
T Consensus 102 ~eI~e~npKNYQvWHHRr~ive~l~d~s 129 (318)
T KOG0530|consen 102 DEIIEDNPKNYQVWHHRRVIVELLGDPS 129 (318)
T ss_pred HHHHHhCccchhHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999766
No 306
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.54 E-value=1.7 Score=46.62 Aligned_cols=93 Identities=9% Similarity=-0.026 Sum_probs=54.0
Q ss_pred chHHHHHhCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n------~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l 251 (331)
|-|.-.++..+|..+++.|..-+..-|.| +....+++.+ |....++++|.++++.|=+.+|.++.......-.
T Consensus 359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~C-YL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~ 437 (872)
T KOG4814|consen 359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVC-YLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQS 437 (872)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 44555666667777777777666665543 2334445444 3346667777777777777777666665433333
Q ss_pred HHHHcCCHHHHHHHHHHHHHh
Q 020094 252 IWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 252 l~~~~Gd~deA~~yfekAL~l 272 (331)
... .+.-++|+.+..+....
T Consensus 438 ~~~-E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 438 FLA-EDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHH-hcchHHHHHHHHHHHhh
Confidence 333 56666666666554433
No 307
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=90.39 E-value=1.7 Score=42.04 Aligned_cols=62 Identities=18% Similarity=-0.000 Sum_probs=55.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 020094 218 KEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVL 280 (331)
Q Consensus 218 ~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl 280 (331)
+...++.+.|..+..+.+.++|++++-+.--|.++.+ .|.+.-|++-++..++..|+++++-
T Consensus 191 ~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~q-l~c~~vAl~dl~~~~~~~P~~~~a~ 252 (269)
T COG2912 191 LLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQ-LGCYHVALEDLSYFVEHCPDDPIAE 252 (269)
T ss_pred HHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHh-cCCchhhHHHHHHHHHhCCCchHHH
Confidence 3447899999999999999999999988888888887 9999999999999999999887653
No 308
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=89.99 E-value=2 Score=37.86 Aligned_cols=69 Identities=12% Similarity=0.032 Sum_probs=54.1
Q ss_pred cchHHHHHhCC---CcHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020094 177 GSNNNYSNNNH---GSSSTDAYYEKMIE-ANPGN-ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILS 246 (331)
Q Consensus 177 ~N~A~~y~s~g---d~ekA~e~yerAL~-~nP~n-~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~ 246 (331)
.|||-++.... +..+.+.+++..+. ..|.. -+.++.||.-+++ .++|++|.+|++..++.+|+|.+++.
T Consensus 36 f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yR-lkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 36 FNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYR-LKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHH-HhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 46676666654 45788999999996 66664 4455666666555 99999999999999999999999983
No 309
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.95 E-value=3.8 Score=36.45 Aligned_cols=71 Identities=14% Similarity=0.074 Sum_probs=47.9
Q ss_pred CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 020094 186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD 258 (331)
Q Consensus 186 ~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd 258 (331)
..+.+++...+..+=-+-|+.+++-..-+.++ .+.|++.+|+++++....-.+..+....+++.+++- .||
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~-i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a-l~D 93 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLL-IARGNYDEAARILRELLSSAGAPPYGKALLALCLNA-KGD 93 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHH-HHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh-cCC
Confidence 45666666666666666777777766666553 347777777777777777777777777666666666 665
No 310
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.71 E-value=2.7 Score=39.00 Aligned_cols=79 Identities=11% Similarity=-0.034 Sum_probs=57.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHc
Q 020094 216 FLKEVRGDFAKAEELCGRAILAN-PSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAP----DDCYVLASYAKFLWDA 290 (331)
Q Consensus 216 ~L~~~~gd~ekAee~~erALeld-P~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP----~d~~vl~~LA~~L~~l 290 (331)
++|. +..-++|.+-|.++-... =+++..++.+|.++. ..|.++|+.+|-+++++.+ -|++++..|+.++.+.
T Consensus 115 y~Ws-r~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~--krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~ 191 (203)
T PF11207_consen 115 YHWS-RFGDQEALRRFLQLEGTPELETAELQYALATYYT--KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKL 191 (203)
T ss_pred HHhh-ccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Confidence 4455 323355665555443221 257888866665444 6899999999999999966 3589999999999999
Q ss_pred CCchHHH
Q 020094 291 GDDEEEE 297 (331)
Q Consensus 291 G~~eEa~ 297 (331)
+++++|=
T Consensus 192 ~~~e~AY 198 (203)
T PF11207_consen 192 KNYEQAY 198 (203)
T ss_pred cchhhhh
Confidence 9998874
No 311
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=88.97 E-value=1.4 Score=29.67 Aligned_cols=30 Identities=13% Similarity=0.005 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCC
Q 020094 245 LSLYADLIWQAHKDASRAESY--FDQAVKSAPD 275 (331)
Q Consensus 245 l~~yA~ll~~~~Gd~deA~~y--fekAL~ldP~ 275 (331)
|..+|-.+++ +|++++|+.+ |+-+..+++.
T Consensus 4 ~y~~a~~~y~-~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQ-KGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHH-TT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHH-HhhHHHHHHHHHHHHHHHhccc
Confidence 3344555555 5555555555 3355555543
No 312
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=88.95 E-value=3.2 Score=41.40 Aligned_cols=95 Identities=7% Similarity=0.040 Sum_probs=73.4
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHH
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPG-NALLLGNYARFLKEVRGDFAKAEELCGRAILA--------NPSDGNILS 246 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~-n~~~l~nLA~~L~~~~gd~ekAee~~erALel--------dP~d~~al~ 246 (331)
...+...+.+.|-+.-|.++++-++.+||. ||......-.++..+.++|+=-++.++..... =|+.+ +
T Consensus 106 l~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a---~ 182 (360)
T PF04910_consen 106 LFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFA---F 182 (360)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHH---H
Confidence 456677888889999999999999999999 88887777777777788888777777765542 23333 3
Q ss_pred HHHHHHHHHcCCH---------------HHHHHHHHHHHHhCC
Q 020094 247 LYADLIWQAHKDA---------------SRAESYFDQAVKSAP 274 (331)
Q Consensus 247 ~yA~ll~~~~Gd~---------------deA~~yfekAL~ldP 274 (331)
..+..++. .++. ++|...+++|+..-|
T Consensus 183 S~aLA~~~-l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 183 SIALAYFR-LEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHHHHHHH-hcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 55666666 5555 899999999998866
No 313
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=88.91 E-value=2.5 Score=35.64 Aligned_cols=87 Identities=18% Similarity=0.183 Sum_probs=62.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH--HHH-HHHHHHH---cCC-------HHHHHHHHHHHHHhCCCCHHHH
Q 020094 214 ARFLKEVRGDFAKAEELCGRAILANPSDGNIL--SLY-ADLIWQA---HKD-------ASRAESYFDQAVKSAPDDCYVL 280 (331)
Q Consensus 214 A~~L~~~~gd~ekAee~~erALeldP~d~~al--~~y-A~ll~~~---~Gd-------~deA~~yfekAL~ldP~d~~vl 280 (331)
|.-++. .||+-+|+++.+.++...+++...| ... +.+++.. ..+ .--|+++|.+++.+.|+.+..+
T Consensus 3 A~~~~~-rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 3 AKDYFA-RGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred HHHHHH-ccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 334444 8999999999999999999877432 222 2222221 122 2368899999999999998888
Q ss_pred HHHHHHHHHcCCchHHHHhhh
Q 020094 281 ASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 281 ~~LA~~L~~lG~~eEa~~~~~ 301 (331)
+.+|.-+--.-.++++-..++
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak 102 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAK 102 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHH
Confidence 998887776777777766665
No 314
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=88.86 E-value=2.7 Score=42.31 Aligned_cols=48 Identities=19% Similarity=0.031 Sum_probs=23.3
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020094 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA 237 (331)
Q Consensus 187 gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALel 237 (331)
.+-.+-+..-..|+++||..+-++..+|.- ..--..+|+.++++|++.
T Consensus 198 Rnp~~RI~~A~~ALeIN~eCA~AyvLLAEE---Ea~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 198 RNPPARIKAAYQALEINNECATAYVLLAEE---EATTIVDAERLFKQALKA 245 (556)
T ss_pred cCcHHHHHHHHHHHhcCchhhhHHHhhhhh---hhhhHHHHHHHHHHHHHH
Confidence 333444444555566666655555544421 122245555556555543
No 315
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.78 E-value=4.8 Score=41.08 Aligned_cols=100 Identities=12% Similarity=0.171 Sum_probs=80.4
Q ss_pred CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-cCC---HHHH
Q 020094 188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVR-GDFAKAEELCGRAILANPSDGNILSLYADLIWQA-HKD---ASRA 262 (331)
Q Consensus 188 d~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~-gd~ekAee~~erALeldP~d~~al~~yA~ll~~~-~Gd---~deA 262 (331)
-.+.-+.+...+|+.||+.-.+|+....++...- -++.+=+++++++++.||.|..+| .|-.++... +.. ..+=
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W-~YRRfV~~~~~~~~~~~~~E 168 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAW-HYRRFVVEQAERSRNLEKEE 168 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccch-HHHHHHHHHHhcccccchhH
Confidence 4577788999999999999999999998876422 247899999999999999999999 555555442 222 4566
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094 263 ESYFDQAVKSAPDDCYVLASYAKFLW 288 (331)
Q Consensus 263 ~~yfekAL~ldP~d~~vl~~LA~~L~ 288 (331)
+.|..++|..++.|..+|-+...++.
T Consensus 169 l~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 169 LEFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHH
Confidence 78999999999999988888877777
No 316
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=88.47 E-value=1.5 Score=29.45 Aligned_cols=33 Identities=12% Similarity=0.089 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 020094 208 LLLGNYARFLKEVRGDFAKAEEL--CGRAILANPSD 241 (331)
Q Consensus 208 ~~l~nLA~~L~~~~gd~ekAee~--~erALeldP~d 241 (331)
+.+..+|..++. .|++++|+.+ |+-+..+++.|
T Consensus 2 e~~y~~a~~~y~-~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQ-KGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhcccC
Confidence 567778877666 8999999999 55888888865
No 317
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=88.14 E-value=5.9 Score=36.69 Aligned_cols=88 Identities=15% Similarity=0.144 Sum_probs=60.6
Q ss_pred cCCHHHHHHHHHHHHHh----CCC---CHHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHhCC------CCHHHH
Q 020094 221 RGDFAKAEELCGRAILA----NPS---DGNILSLYADLIWQAHKDAS-------RAESYFDQAVKSAP------DDCYVL 280 (331)
Q Consensus 221 ~gd~ekAee~~erALel----dP~---d~~al~~yA~ll~~~~Gd~d-------eA~~yfekAL~ldP------~d~~vl 280 (331)
...+++|++.|.-|+.. ..+ -+.++..+||++.. .++.+ +|..+|++|+.... +...++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~-~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRD-LGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc-cCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 45677777777777643 222 25566678888877 77744 66677777776643 235688
Q ss_pred HHHHHHHHHcCCchHHHHhhhhhhcccCC
Q 020094 281 ASYAKFLWDAGDDEEEEQDNEESQHQTDH 309 (331)
Q Consensus 281 ~~LA~~L~~lG~~eEa~~~~~~~~~~~~~ 309 (331)
+-+|.+..++|+.+||.+++.......+.
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 88999999999999999888744443333
No 318
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.91 E-value=6.4 Score=41.89 Aligned_cols=95 Identities=14% Similarity=0.124 Sum_probs=74.7
Q ss_pred hHHHHHhCCCcHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHhCCCCHHHHHHHHHHH
Q 020094 179 NNNYSNNNHGSSSTDAYYEKMIEANPG-NALLLGNYARFLKEVRGDFAKAEELCGRA-----ILANPSDGNILSLYADLI 252 (331)
Q Consensus 179 ~A~~y~s~gd~ekA~e~yerAL~~nP~-n~~~l~nLA~~L~~~~gd~ekAee~~erA-----LeldP~d~~al~~yA~ll 252 (331)
|-..+...|=+.-|.++++-++.++|. ||.....+-.++.++..+|+=-+++++.. +..-|+.++.+ .+|.++
T Consensus 348 ~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~-AlA~f~ 426 (665)
T KOG2422|consen 348 YMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSL-ALARFF 426 (665)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHH-HHHHHH
Confidence 344556678889999999999999999 99988888878777788887777766655 66679998887 677777
Q ss_pred HHHcCC--HHHHHHHHHHHHHhCC
Q 020094 253 WQAHKD--ASRAESYFDQAVKSAP 274 (331)
Q Consensus 253 ~~~~Gd--~deA~~yfekAL~ldP 274 (331)
...+.. -+-|+..+.+|+...|
T Consensus 427 l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 427 LRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HhcCChhhHHHHHHHHHHHHHhCc
Confidence 763432 5678899999998876
No 319
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.87 E-value=9.9 Score=34.02 Aligned_cols=93 Identities=18% Similarity=0.059 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHH---
Q 020094 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN---ILSLYADLIWQAHKDASRAESYFDQAVKSAPD--DCY--- 278 (331)
Q Consensus 207 ~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~---al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~--d~~--- 278 (331)
...+..+|.+++. .||+++|.+.|.++.+....... ++.+...+... .+++.....++.+|-.+-.. +..
T Consensus 36 r~~~~~l~~~~~~-~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~-~~d~~~v~~~i~ka~~~~~~~~d~~~~n 113 (177)
T PF10602_consen 36 RMALEDLADHYCK-IGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF-FGDWSHVEKYIEKAESLIEKGGDWERRN 113 (177)
T ss_pred HHHHHHHHHHHHH-hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence 3567788988766 99999999999999887655443 33345555566 89999999999999887442 222
Q ss_pred -HHHHHHHHHHHcCCchHHHHhhh
Q 020094 279 -VLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 279 -vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
.-...|..+...+++.+|-..+-
T Consensus 114 rlk~~~gL~~l~~r~f~~AA~~fl 137 (177)
T PF10602_consen 114 RLKVYEGLANLAQRDFKEAAELFL 137 (177)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHH
Confidence 23344677778889999987664
No 320
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=87.87 E-value=11 Score=32.79 Aligned_cols=80 Identities=18% Similarity=0.144 Sum_probs=50.1
Q ss_pred cCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCCHH---
Q 020094 221 RGDFAKAEELCGRAILANPS------------DGNILSLYADLIWQAHKDASRAESYFDQAV-------KSAPDDCY--- 278 (331)
Q Consensus 221 ~gd~ekAee~~erALeldP~------------d~~al~~yA~ll~~~~Gd~deA~~yfekAL-------~ldP~d~~--- 278 (331)
.+-|++|..-|++|++..-. |+.++..++..+.. .|+|++++.-.++|| +++.+...
T Consensus 22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~-Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAG-LGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 46678888888888776432 55666667777777 888776554444444 44444443
Q ss_pred -HHHHHHHHHHHcCCchHHHHhhh
Q 020094 279 -VLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 279 -vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
+.++.+.++..+|+.+||.+.++
T Consensus 101 aaVfsra~Al~~~Gr~~eA~~~fr 124 (144)
T PF12968_consen 101 AAVFSRAVALEGLGRKEEALKEFR 124 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHH
Confidence 33667788888888888876655
No 321
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.59 E-value=3.2 Score=40.30 Aligned_cols=64 Identities=20% Similarity=0.080 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020094 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 207 ~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~l 272 (331)
..++..++..+.. .++++.+++.+++.+..+|.+-..|..+...++. .|+...|+..|++.-..
T Consensus 153 ~~~l~~lae~~~~-~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~-~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIA-CGRADAVIEHLERLIELDPYDEPAYLRLMEAYLV-NGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHh-cccHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-cCCchHHHHHHHHHHHH
Confidence 3456677777554 8999999999999999999999999888888887 99999999999988774
No 322
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=87.18 E-value=5 Score=34.82 Aligned_cols=85 Identities=15% Similarity=0.112 Sum_probs=57.2
Q ss_pred CCCcHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCCHHHH-
Q 020094 186 NHGSSSTDAYYEKMIEANPG------------NALLLGNYARFLKEVRGDFAKAEELCGRAI-------LANPSDGNIL- 245 (331)
Q Consensus 186 ~gd~ekA~e~yerAL~~nP~------------n~~~l~nLA~~L~~~~gd~ekAee~~erAL-------eldP~d~~al- 245 (331)
.+-|++|..-|++++..... ++..+..|+.++.. +|+|++++.-..+|+ +++.+....|
T Consensus 22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~-Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAG-LGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 36789999999999987422 34456677777666 899987655555554 6777766655
Q ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020094 246 ---SLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 246 ---~~yA~ll~~~~Gd~deA~~yfekAL~l 272 (331)
++.+..+.. .|+.++|+..|+.+.+.
T Consensus 101 aaVfsra~Al~~-~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 101 AAVFSRAVALEG-LGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCChHHHHHHHHHHHHH
Confidence 234444555 89999999999998763
No 323
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.88 E-value=18 Score=32.21 Aligned_cols=72 Identities=18% Similarity=0.097 Sum_probs=62.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 020094 221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDD 293 (331)
Q Consensus 221 ~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~ 293 (331)
..+..+++..+...--+.|+.+.+-..-++++.. .|++++|+.+|+....-.+..++.-.-++.|+.-+++.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~-rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIA-RGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHH-cCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 7889999999999999999999998666666666 99999999999999998888788888888888888873
No 324
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=85.51 E-value=12 Score=37.70 Aligned_cols=78 Identities=18% Similarity=0.075 Sum_probs=43.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------------C-C
Q 020094 221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSA------------------------P-D 275 (331)
Q Consensus 221 ~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ld------------------------P-~ 275 (331)
..+..+-++....|+++||.-+.++..++.-- .--..+|++.|++|++.. - -
T Consensus 197 ERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE---a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnv 273 (556)
T KOG3807|consen 197 ERNPPARIKAAYQALEINNECATAYVLLAEEE---ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNV 273 (556)
T ss_pred hcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh---hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccch
Confidence 45555555666667777776666664444321 223455666666555541 0 0
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 276 DCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 276 d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
-.++-..++.|-.++|+..||.|.++
T Consensus 274 l~YIKRRLAMCARklGrlrEA~K~~R 299 (556)
T KOG3807|consen 274 LVYIKRRLAMCARKLGRLREAVKIMR 299 (556)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 12344666677777777777766655
No 325
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=85.41 E-value=19 Score=37.08 Aligned_cols=116 Identities=16% Similarity=0.082 Sum_probs=54.9
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 020094 180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAK-AEELCGRAILANPSDGNILSLYADLIWQAHKD 258 (331)
Q Consensus 180 A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ek-Aee~~erALeldP~d~~al~~yA~ll~~~~Gd 258 (331)
|..|+..++..++-.+++.+.+.+|+ |+++..|-.+ +.||... =.+-.++...+.|||.......+..-+. .|+
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY~~a---r~gdta~dRlkRa~~L~slk~nnaes~~~va~aAld-a~e 344 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAEPH-PDIALLYVRA---RSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALD-AGE 344 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcCCC-hHHHHHHHHh---cCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHh-ccc
Confidence 44555555555555555555555553 2222222211 1333211 1222333444455566555555555555 666
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCchHHHHhhh
Q 020094 259 ASRAESYFDQAVKSAPDDCYVLASYAKFLW-DAGDDEEEEQDNE 301 (331)
Q Consensus 259 ~deA~~yfekAL~ldP~d~~vl~~LA~~L~-~lG~~eEa~~~~~ 301 (331)
|..|..--+.+...+|....+ .-++.+.. +.|+..+...++-
T Consensus 345 ~~~ARa~Aeaa~r~~pres~~-lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 345 FSAARAKAEAAAREAPRESAY-LLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred hHHHHHHHHHHhhhCchhhHH-HHHHHHHhhccCchHHHHHHHH
Confidence 666666666666666633322 22333332 3355555544443
No 326
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=85.33 E-value=3.1 Score=42.72 Aligned_cols=32 Identities=16% Similarity=0.150 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020094 239 PSDGNILSLYADLIWQAHKDASRAESYFDQAVK 271 (331)
Q Consensus 239 P~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ 271 (331)
-+++..|..++...+. +|+++-|+.+|+++-.
T Consensus 344 ~~~~~~W~~Lg~~AL~-~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALR-QGNIELAEECYQKAKD 375 (443)
T ss_dssp CSTHHHHHHHHHHHHH-TTBHHHHHHHHHHCT-
T ss_pred cCcHHHHHHHHHHHHH-cCCHHHHHHHHHhhcC
Confidence 3477788888888887 8888888888887643
No 327
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=84.44 E-value=27 Score=33.14 Aligned_cols=97 Identities=9% Similarity=0.012 Sum_probs=70.0
Q ss_pred ccchHHHHHhCC-CcHHHHHHHHHHHHh----CC---CC-------HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh
Q 020094 176 SGSNNNYSNNNH-GSSSTDAYYEKMIEA----NP---GN-------ALLLGNYARFLKEVRGD---FAKAEELCGRAILA 237 (331)
Q Consensus 176 ~~N~A~~y~s~g-d~ekA~e~yerAL~~----nP---~n-------~~~l~nLA~~L~~~~gd---~ekAee~~erALel 237 (331)
.+|.+.-..+.+ +++.|..++++++.+ .. .. ..++..++.++.. .+. +.+|..+++.+...
T Consensus 38 ~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~-~~~~~~~~ka~~~l~~l~~e 116 (278)
T PF08631_consen 38 CYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLE-WDTYESVEKALNALRLLESE 116 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHh
Confidence 578888888888 999999999999988 22 22 2234555666433 333 46677777777777
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020094 238 NPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAP 274 (331)
Q Consensus 238 dP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP 274 (331)
.|+.+.++.....++.. .++.+++...+.+++..-+
T Consensus 117 ~~~~~~~~~L~l~il~~-~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 117 YGNKPEVFLLKLEILLK-SFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred CCCCcHHHHHHHHHHhc-cCChhHHHHHHHHHHHhcc
Confidence 88888887555555554 7889999999999988755
No 328
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.00 E-value=17 Score=37.24 Aligned_cols=105 Identities=11% Similarity=0.061 Sum_probs=77.4
Q ss_pred CCc-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-----------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094 187 HGS-SSTDAYYEKMIEANPGNALLLGNYARFLKEV-----------RGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 187 gd~-ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~-----------~gd~ekAee~~erALeldP~d~~al~~yA~ll~~ 254 (331)
+.| +.+++.-.+.+..||+..-+|+.--.++... +.-+++-+.+...+|+.+|+...+|....+++..
T Consensus 42 ~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~ 121 (421)
T KOG0529|consen 42 KEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQK 121 (421)
T ss_pred cccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence 444 7888888899999998877765332222111 1235667888999999999999999999998886
Q ss_pred HcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020094 255 AHK--DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGD 292 (331)
Q Consensus 255 ~~G--d~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~ 292 (331)
.. ++..-++..+++++.||.|...|.....+......
T Consensus 122 -~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~ 160 (421)
T KOG0529|consen 122 -NPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAER 160 (421)
T ss_pred -CCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhc
Confidence 44 47888999999999999887766655555554443
No 329
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=83.90 E-value=19 Score=38.25 Aligned_cols=113 Identities=14% Similarity=0.139 Sum_probs=83.3
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN----------------- 238 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeld----------------- 238 (331)
...++++|... +.++-...+++.++.+=++...-..||..+ + ..+..++..+|.+|+..-
T Consensus 102 l~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~y-E-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~ 178 (711)
T COG1747 102 LLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKY-E-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLP 178 (711)
T ss_pred HHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHH-H-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHH
Confidence 44567788877 677788888899999888888888888874 4 488888888888887532
Q ss_pred ---CCCHHHHHH-------------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020094 239 ---PSDGNILSL-------------------YADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG 291 (331)
Q Consensus 239 ---P~d~~al~~-------------------yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG 291 (331)
|+|.+..+. .....|....++++|++.+...++.|..|..+.-++...+.+.-
T Consensus 179 ~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y 253 (711)
T COG1747 179 ELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKY 253 (711)
T ss_pred HhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHh
Confidence 333332222 11223333578999999999999999999999999988888733
No 330
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.83 E-value=6.5 Score=42.43 Aligned_cols=87 Identities=11% Similarity=0.012 Sum_probs=66.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020094 212 NYARFLKEVRGDFAKAEELCGRAILANPSDG------NILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAK 285 (331)
Q Consensus 212 nLA~~L~~~~gd~ekAee~~erALeldP~d~------~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~ 285 (331)
+-|.-+++ ..+|.-++++|...+.--|.|- ....+++.+|.. ..+.|+|+++++.|-+.+|.++......-.
T Consensus 359 n~A~~~F~-~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~-L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 359 NTAKKLFK-MEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLK-LEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred HhhHHHHH-HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 33444455 7899999999999999877654 344456666665 899999999999999999999887777777
Q ss_pred HHHHcCCchHHHHhh
Q 020094 286 FLWDAGDDEEEEQDN 300 (331)
Q Consensus 286 ~L~~lG~~eEa~~~~ 300 (331)
+...-++-++|-...
T Consensus 437 ~~~~E~~Se~AL~~~ 451 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCL 451 (872)
T ss_pred HHHHhcchHHHHHHH
Confidence 777777777775433
No 331
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=83.56 E-value=8.8 Score=30.45 Aligned_cols=60 Identities=18% Similarity=0.154 Sum_probs=43.5
Q ss_pred hCCCcHHHHHHHHHHHHhCC----CC-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHH
Q 020094 185 NNHGSSSTDAYYEKMIEANP----GN-----ALLLGNYARFLKEVRGDFAKAEELCGRAILANP--SDGNIL 245 (331)
Q Consensus 185 s~gd~ekA~e~yerAL~~nP----~n-----~~~l~nLA~~L~~~~gd~ekAee~~erALeldP--~d~~al 245 (331)
..++|..|.+.+.+.+..-. .. ..++.++|.+... .|++++|.+.+++||.+.- +|...+
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~Are~~D~~~l 80 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLARENGDRRCL 80 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHCCHHHH
Confidence 45789999777777766532 22 3556778887655 8999999999999998754 455555
No 332
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=83.18 E-value=2.7 Score=40.63 Aligned_cols=71 Identities=11% Similarity=0.008 Sum_probs=62.2
Q ss_pred cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020094 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILS 246 (331)
Q Consensus 175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~ 246 (331)
+..|+=..|....+++.|..+-++.+..+|+++.-+..-|.++.. .+-+.-|++-+...++.-|+++.+-.
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~q-l~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQ-LGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHh-cCCchhhHHHHHHHHHhCCCchHHHH
Confidence 356666677788899999999999999999999998888877554 89999999999999999999998873
No 333
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.02 E-value=1.6 Score=26.78 Aligned_cols=20 Identities=20% Similarity=0.223 Sum_probs=9.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q 020094 246 SLYADLIWQAHKDASRAESYF 266 (331)
Q Consensus 246 ~~yA~ll~~~~Gd~deA~~yf 266 (331)
..++.+++. .|++++|+..+
T Consensus 5 ~~la~~~~~-~G~~~eA~~~l 24 (26)
T PF07721_consen 5 LALARALLA-QGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHH-cCCHHHHHHHH
Confidence 344444444 55555555444
No 334
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.84 E-value=32 Score=36.30 Aligned_cols=126 Identities=15% Similarity=-0.011 Sum_probs=80.5
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHh---CCC-------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C--H
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEA---NPG-------NALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-D--G 242 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~---nP~-------n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~-d--~ 242 (331)
.-|.+.|-.-.+++.+|++....+.+. .|. .+.+...+|.+ +...+.|+.|+..|..|+++--. + +
T Consensus 326 LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGly-s~sv~~~enAe~hf~~a~k~t~~~dl~a 404 (629)
T KOG2300|consen 326 LEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLY-SHSVNCYENAEFHFIEATKLTESIDLQA 404 (629)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhH-hhhcchHHHHHHHHHHHHHhhhHHHHHH
Confidence 556677777788898888887777664 444 23444455544 33377889999999999876443 2 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCchHHHHhhhhhhcc
Q 020094 243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDD----------CYVLASYAKFLWDAGDDEEEEQDNEESQHQ 306 (331)
Q Consensus 243 ~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d----------~~vl~~LA~~L~~lG~~eEa~~~~~~~~~~ 306 (331)
.+-.++|..|.. .++ +..+|+-.=.+.|.| ..+++-+|.+.+..+++.||.--.+|+++.
T Consensus 405 ~~nlnlAi~YL~-~~~---~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkm 474 (629)
T KOG2300|consen 405 FCNLNLAISYLR-IGD---AEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKM 474 (629)
T ss_pred HHHHhHHHHHHH-hcc---HHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 333345665555 444 444454444445542 236677788888888888888777665553
No 335
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=81.65 E-value=8.6 Score=46.67 Aligned_cols=112 Identities=11% Similarity=-0.026 Sum_probs=81.3
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------------
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD-------------- 241 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d-------------- 241 (331)
..++|++....|.++.|-.+.-+|.+.. -+.+..-.|..+|. .||-.+|+..+++.+.++=-+
T Consensus 1673 wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~-~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~ 1749 (2382)
T KOG0890|consen 1673 WLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQ-TGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNL 1749 (2382)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHh-hccHHHHHHHHHHHHHhhcccccCCccccchhhhh
Confidence 4578999999999999999998888877 67788888999888 999999999999999664222
Q ss_pred ---HHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020094 242 ---GNILSLYADLIWQAHKDA--SRAESYFDQAVKSAPDDCYVLASYAKFLWDAG 291 (331)
Q Consensus 242 ---~~al~~yA~ll~~~~Gd~--deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG 291 (331)
..++..++..+-+ .+++ +.-+++|..|+++.|....-++.+|..|.+.-
T Consensus 1750 ~i~~~~~L~~~~~~~e-s~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll 1803 (2382)
T KOG0890|consen 1750 LIFKKAKLKITKYLEE-SGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLL 1803 (2382)
T ss_pred hhhhhHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHh
Confidence 1123222222222 5553 35669999999999966655666665555443
No 336
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=81.29 E-value=7.9 Score=34.51 Aligned_cols=51 Identities=24% Similarity=0.296 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 020094 224 FAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (331)
Q Consensus 224 ~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d 276 (331)
.+..+++.++.++..| ++.++.+++.++.. .|+.++|....+++..+-|.+
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~-~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALAL-LGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCcH
Confidence 4567788888888889 67777789998888 999999999999999999933
No 337
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=80.39 E-value=26 Score=35.18 Aligned_cols=58 Identities=14% Similarity=0.067 Sum_probs=42.6
Q ss_pred chHHHHHhCCCcHHHHHHHHHHHHhCCCCHH--HHHHH--HHHHHHHcCCHHHHHHHHHHHHH
Q 020094 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNAL--LLGNY--ARFLKEVRGDFAKAEELCGRAIL 236 (331)
Q Consensus 178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~--~l~nL--A~~L~~~~gd~ekAee~~erALe 236 (331)
+.+.-+++.++|..|...|..++..-|.+.. .+..+ |...|. ..++++|.+++++.+.
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD-~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWD-RFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHH
Confidence 4566778899999999999999986444444 33333 344566 7889999999987765
No 338
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=78.58 E-value=2.7 Score=25.67 Aligned_cols=25 Identities=36% Similarity=0.254 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020094 208 LLLGNYARFLKEVRGDFAKAEELCGR 233 (331)
Q Consensus 208 ~~l~nLA~~L~~~~gd~ekAee~~er 233 (331)
.+..++|.++.. .|++++|+..+++
T Consensus 2 ~a~~~la~~~~~-~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLA-QGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHhC
Confidence 355677777665 8888888877753
No 339
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=78.49 E-value=20 Score=37.51 Aligned_cols=108 Identities=14% Similarity=0.110 Sum_probs=71.5
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 020094 185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAES 264 (331)
Q Consensus 185 s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~ 264 (331)
+....+.|..+|-++-+.---..+++..-|.+-+...+|+.-|-.+|+--+..-|+++.....|..++.. .++-..|..
T Consensus 409 r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~-inde~nara 487 (660)
T COG5107 409 RKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIR-INDEENARA 487 (660)
T ss_pred HHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHH-hCcHHHHHH
Confidence 3445677777777664433122333322233333447888888889988888888888887778777777 888888888
Q ss_pred HHHHHHHhCCCC--HHHHHHHHHHHHHcCCc
Q 020094 265 YFDQAVKSAPDD--CYVLASYAKFLWDAGDD 293 (331)
Q Consensus 265 yfekAL~ldP~d--~~vl~~LA~~L~~lG~~ 293 (331)
+|++++..-.++ -.+|..+.....+-|+.
T Consensus 488 LFetsv~r~~~~q~k~iy~kmi~YEs~~G~l 518 (660)
T COG5107 488 LFETSVERLEKTQLKRIYDKMIEYESMVGSL 518 (660)
T ss_pred HHHHhHHHHHHhhhhHHHHHHHHHHHhhcch
Confidence 888777654433 45666666666666655
No 340
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=78.27 E-value=35 Score=35.70 Aligned_cols=84 Identities=15% Similarity=0.109 Sum_probs=49.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH--HHHHHHHHh---------CC---CC
Q 020094 211 GNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAE--SYFDQAVKS---------AP---DD 276 (331)
Q Consensus 211 ~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~--~yfekAL~l---------dP---~d 276 (331)
..-|.-+|+.-+.-++|+.+++.+++..|.|..+.+.. +++- ...|.+|+ ..+.+.+++ .| .+
T Consensus 383 ~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v--~~fv-Kq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e 459 (549)
T PF07079_consen 383 VFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIV--FLFV-KQAYKQALSMHAIPRLLKLEDFITEVGLTPITISE 459 (549)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHH--HHHH-HHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccH
Confidence 33455667733448999999999999999999877322 2222 23344443 334444444 23 23
Q ss_pred HHH--HHHHHHHHHHcCCchHHH
Q 020094 277 CYV--LASYAKFLWDAGDDEEEE 297 (331)
Q Consensus 277 ~~v--l~~LA~~L~~lG~~eEa~ 297 (331)
.++ ...=|.++.-.|++.+..
T Consensus 460 ~eian~LaDAEyLysqgey~kc~ 482 (549)
T PF07079_consen 460 EEIANFLADAEYLYSQGEYHKCY 482 (549)
T ss_pred HHHHHHHHHHHHHHhcccHHHHH
Confidence 332 233355667778887764
No 341
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=76.88 E-value=4.4 Score=27.66 Aligned_cols=29 Identities=10% Similarity=0.335 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020094 243 NILSLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 243 ~al~~yA~ll~~~~Gd~deA~~yfekAL~l 272 (331)
+++..+|.+..+ .++|++|+.-|++++++
T Consensus 2 dv~~~Lgeisle-~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLE-NENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHH-hccHHHHHHHHHHHHHH
Confidence 455667777777 78888888888888776
No 342
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=76.38 E-value=54 Score=31.45 Aligned_cols=66 Identities=21% Similarity=0.139 Sum_probs=54.4
Q ss_pred HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020094 183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYA 249 (331)
Q Consensus 183 y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA 249 (331)
+...+...+|+...+.-++.+|.+......|=.+++. .|++++|.-.++-+-++.|++..-...|-
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcv-aGdw~kAl~Ql~l~a~l~p~~t~~a~lyr 76 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCV-AGDWEKALAQLNLAATLSPQDTVGASLYR 76 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhh-cchHHHHHHHHHHHhhcCcccchHHHHHH
Confidence 4445678999999999999999998887777777775 99999999999999999998765543443
No 343
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.10 E-value=35 Score=31.67 Aligned_cols=125 Identities=13% Similarity=-0.010 Sum_probs=88.7
Q ss_pred cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHH
Q 020094 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA--LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG----NILSLY 248 (331)
Q Consensus 175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~--~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~----~al~~y 248 (331)
-..-.|.-+-..++-++|+..|..+-..+-..- .+....|.++.. .|+...|..+|..+-.-.|--. .+...-
T Consensus 60 d~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~-kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQ-KGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhh-cccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 333345555667888999999998777665543 344555666655 8999999999999877665321 223344
Q ss_pred HHHHHHHcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 249 ADLIWQAHKDASRAESYFDQA-VKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 249 A~ll~~~~Gd~deA~~yfekA-L~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
+.++.+ .|-|+.-..-.+.. ...+|.-......|+..-|+.|++..+.++++
T Consensus 139 a~lLvD-~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~ 191 (221)
T COG4649 139 AYLLVD-NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFV 191 (221)
T ss_pred HHHHhc-cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHH
Confidence 555666 89999877766543 23345556788899999999999999999887
No 344
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=76.07 E-value=14 Score=41.68 Aligned_cols=80 Identities=14% Similarity=-0.026 Sum_probs=48.8
Q ss_pred cCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHH---cC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020094 221 RGDFAKAEELCGRAILANPS---DGNILSLYADLIWQA---HK---DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG 291 (331)
Q Consensus 221 ~gd~ekAee~~erALeldP~---d~~al~~yA~ll~~~---~G---d~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG 291 (331)
.+.|++|+..|+|...--|. -..+.+..+..+.++ .+ .+++|+.-|++... .|.-+--|..-|.+|..++
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 566 (932)
T PRK13184 488 EKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKALVYQRLG 566 (932)
T ss_pred hHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHHHHHHhh
Confidence 45677777777777777664 335555566555543 12 36666666655433 3445555666667777777
Q ss_pred CchHHHHhhh
Q 020094 292 DDEEEEQDNE 301 (331)
Q Consensus 292 ~~eEa~~~~~ 301 (331)
+++|+.+.++
T Consensus 567 ~~~~~~~~~~ 576 (932)
T PRK13184 567 EYNEEIKSLL 576 (932)
T ss_pred hHHHHHHHHH
Confidence 7777777665
No 345
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=75.98 E-value=13 Score=33.07 Aligned_cols=52 Identities=23% Similarity=0.283 Sum_probs=43.2
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020094 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG 242 (331)
Q Consensus 189 ~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~ 242 (331)
.+..++..++.+...| ++.++.+|+.++.. .|+.++|.++.+++..+-|.+.
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~-~G~~~eA~~~~~~~~~lyP~~~ 178 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALAL-LGDPEEARQWLARARRLYPADE 178 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCcHH
Confidence 3566677777788778 78888899988776 9999999999999999999443
No 346
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=75.50 E-value=12 Score=37.08 Aligned_cols=46 Identities=15% Similarity=0.046 Sum_probs=31.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 256 ~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
.|.+.+|.++.+++++++|-+...+.-+..+|...|+.-.+.+.++
T Consensus 292 ~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khye 337 (361)
T COG3947 292 AGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYE 337 (361)
T ss_pred cCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHH
Confidence 6777777777777777777777777777777777777666665544
No 347
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=75.46 E-value=65 Score=36.08 Aligned_cols=118 Identities=14% Similarity=0.109 Sum_probs=78.4
Q ss_pred cccccchHHHHHhCCCcHHHHHHHHHHHHhCCC--CH---H---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--
Q 020094 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPG--NA---L---LLGNYARFLKEVRGDFAKAEELCGRAILANPSDG-- 242 (331)
Q Consensus 173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~--n~---~---~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~-- 242 (331)
+.+---+|-.......+.+|..+..++...-+. .. . -+..+........+++++|+.+.+.++..=|.+.
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 333334555667778999999999888776554 11 1 1223333334458999999999999999888754
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHH--HHHHHHcC
Q 020094 243 ---NILSLYADLIWQAHKDASRAESYFDQAVKSAP----DDCYVLASY--AKFLWDAG 291 (331)
Q Consensus 243 ---~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP----~d~~vl~~L--A~~L~~lG 291 (331)
.++...+.+..- .|++++|..+.+++.+..- ....+|..+ +.++...|
T Consensus 495 ~r~~~~sv~~~a~~~-~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG 551 (894)
T COG2909 495 SRIVALSVLGEAAHI-RGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG 551 (894)
T ss_pred hhhhhhhhhhHHHHH-hchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence 344445555555 8999999999999998844 223333333 55566667
No 348
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=75.29 E-value=24 Score=27.75 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhCCCCHH
Q 020094 224 FAKAEELCGRAILANPSDGN 243 (331)
Q Consensus 224 ~ekAee~~erALeldP~d~~ 243 (331)
|.+|++.+.+++...|+++.
T Consensus 29 Y~~aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 29 YKKAIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHHHHHhCCChHH
Confidence 44555555555566666654
No 349
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=74.98 E-value=5.1 Score=37.59 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020094 224 FAKAEELCGRAILANPSDGNIL---SLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 224 ~ekAee~~erALeldP~d~~al---~~yA~ll~~~~Gd~deA~~yfekAL~l 272 (331)
|++|.+...+- +.|.+|..+ .+++.++|+..++.++|....++|++.
T Consensus 149 Y~~A~~~a~~~--L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 149 YEEALEIAKKE--LPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHH--SCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred hhhHHHHHhcc--cCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 44444444433 345555322 245555555555555555555555443
No 350
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=74.97 E-value=4.2 Score=40.82 Aligned_cols=70 Identities=11% Similarity=0.022 Sum_probs=39.2
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILS 246 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~ 246 (331)
..|.+.+..+.+++..|+.....+++.++....+++..+..... ..++++|++.++.|...+|++..+..
T Consensus 278 ~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~-~~~~~~a~~~~~~a~~~~p~d~~i~~ 347 (372)
T KOG0546|consen 278 RRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKL-LKNYDEALEDLKKAKQKAPNDKAIEE 347 (372)
T ss_pred ccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHh-hhchhhhHHHHHHhhccCcchHHHHH
Confidence 33455555555555555555555555555555555555555332 56666666666666666666665553
No 351
>PF13041 PPR_2: PPR repeat family
Probab=74.62 E-value=15 Score=25.25 Aligned_cols=41 Identities=12% Similarity=0.024 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHH
Q 020094 242 GNILSLYADLIWQAHKDASRAESYFDQAVKSAP-DDCYVLASY 283 (331)
Q Consensus 242 ~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP-~d~~vl~~L 283 (331)
...|..+...+.+ .|++++|.++|++..+..- -|...+..+
T Consensus 3 ~~~yn~li~~~~~-~~~~~~a~~l~~~M~~~g~~P~~~Ty~~l 44 (50)
T PF13041_consen 3 VVTYNTLISGYCK-AGKFEEALKLFKEMKKRGIKPDSYTYNIL 44 (50)
T ss_pred hHHHHHHHHHHHH-CcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3445445555555 7777777777777666532 344444443
No 352
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=74.39 E-value=49 Score=27.43 Aligned_cols=50 Identities=16% Similarity=0.082 Sum_probs=37.1
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 020094 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCG 232 (331)
Q Consensus 181 ~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~e 232 (331)
..+...+.......+++.++..++.++.+...|..++.. -+..+..+++.
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~--~~~~~ll~~l~ 64 (140)
T smart00299 15 ELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAK--YDPQKEIERLD 64 (140)
T ss_pred HHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH--HCHHHHHHHHH
Confidence 344555678999999999999998888888888877544 34555666655
No 353
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=74.32 E-value=76 Score=33.65 Aligned_cols=122 Identities=18% Similarity=0.036 Sum_probs=73.5
Q ss_pred cchHHHHH-hCCCcHHHHHHHHHHHHhC--CCCHHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CH-HHH
Q 020094 177 GSNNNYSN-NNHGSSSTDAYYEKMIEAN--PGNALL----LGNYARFLKEVRGDFAKAEELCGRAILANPS---DG-NIL 245 (331)
Q Consensus 177 ~N~A~~y~-s~gd~ekA~e~yerAL~~n--P~n~~~----l~nLA~~L~~~~gd~ekAee~~erALeldP~---d~-~al 245 (331)
.-||..|. ...+++.|+.+++|++.+. ++..+. .+.++.+++. .+...|..+++++|+.--+ .. ...
T Consensus 63 l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~--~~~~~a~~~l~~~I~~~~~~~~~~w~~~ 140 (608)
T PF10345_consen 63 LRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFK--TNPKAALKNLDKAIEDSETYGHSAWYYA 140 (608)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHhccCchhHHHH
Confidence 34666666 5588999999999998886 443333 2334555443 4444499999999987554 22 222
Q ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHHhCC--CCHHH--HHHH--HHHHHHcCCchHHHHhh
Q 020094 246 SLYADL-IWQAHKDASRAESYFDQAVKSAP--DDCYV--LASY--AKFLWDAGDDEEEEQDN 300 (331)
Q Consensus 246 ~~yA~l-l~~~~Gd~deA~~yfekAL~ldP--~d~~v--l~~L--A~~L~~lG~~eEa~~~~ 300 (331)
+.+..+ +....+++..|+..++....... .+..+ +..+ +.+....+..++.....
T Consensus 141 frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l 202 (608)
T PF10345_consen 141 FRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELL 202 (608)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHH
Confidence 223212 22213799999999999998873 55543 3333 33344445454444333
No 354
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.39 E-value=15 Score=29.40 Aligned_cols=51 Identities=8% Similarity=0.019 Sum_probs=31.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH---HHHHcCCHHHHHHHHHHHHHh
Q 020094 221 RGDFAKAEELCGRAILANPSDGNILSLYADL---IWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 221 ~gd~ekAee~~erALeldP~d~~al~~yA~l---l~~~~Gd~deA~~yfekAL~l 272 (331)
.++.++|+..+++|++..++.+.-+..++.+ +.+ .|+|.+++.|--+=+++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e-~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHME-WGKYREMLAFALQQLEI 72 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 5667777777777777776666555444433 233 67777777665554444
No 355
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.39 E-value=10 Score=37.56 Aligned_cols=73 Identities=18% Similarity=0.150 Sum_probs=54.6
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020094 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF 266 (331)
Q Consensus 187 gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yf 266 (331)
+..+.+...|-+.+ ...+.. +...|.+.+|+++.++++++||-+-..+..+-.++.. .||--.|.+.|
T Consensus 269 dererle~ly~kll----------gkva~~-yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~-~gD~is~~khy 336 (361)
T COG3947 269 DERERLEQLYMKLL----------GKVARA-YLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLAT-LGDEISAIKHY 336 (361)
T ss_pred chHHHHHHHHHHHH----------HHHHHH-HHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHH-hccchhhhhHH
Confidence 45566666665543 233444 4448999999999999999999999999777777766 99988888877
Q ss_pred HHHHH
Q 020094 267 DQAVK 271 (331)
Q Consensus 267 ekAL~ 271 (331)
++.-+
T Consensus 337 erya~ 341 (361)
T COG3947 337 ERYAE 341 (361)
T ss_pred HHHHH
Confidence 76544
No 356
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.09 E-value=21 Score=28.46 Aligned_cols=41 Identities=17% Similarity=0.163 Sum_probs=18.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCchHH
Q 020094 256 HKDASRAESYFDQAVKSAPDDCY---VLASYAKFLWDAGDDEEE 296 (331)
Q Consensus 256 ~Gd~deA~~yfekAL~ldP~d~~---vl~~LA~~L~~lG~~eEa 296 (331)
..+.++|+..+++++...++... ++..+..+|.+.|++++.
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~ 62 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREM 62 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555443322 333444444455554444
No 357
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.67 E-value=27 Score=33.40 Aligned_cols=56 Identities=20% Similarity=0.238 Sum_probs=51.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020094 221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC 277 (331)
Q Consensus 221 ~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~ 277 (331)
.+.+.+|+...+.-|+.+|.|....-.|-.++.. .|++++|...++-+-.+.|++.
T Consensus 14 ~~sL~dai~~a~~qVkakPtda~~RhflfqLlcv-aGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 14 DNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCV-AGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hccHHHHHHHHHHHHhcCCccccchhHHHHHHhh-cchHHHHHHHHHHHhhcCcccc
Confidence 6889999999999999999999998888888888 9999999999999999999553
No 358
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=72.46 E-value=21 Score=37.71 Aligned_cols=102 Identities=14% Similarity=0.158 Sum_probs=70.2
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094 185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKE---VRGD------FAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 185 s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~---~~gd------~ekAee~~erALeldP~d~~al~~yA~ll~~~ 255 (331)
..|..++|+..+-...++.|+-......|-+++.. ..+| --+-+.|..+.+-.|..|++++ .|+.+-.+.
T Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 788 (831)
T PRK15180 710 TEGRLDEALSVLISLKRIEPDVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLVFDSENAYAL-KYAALNAMH 788 (831)
T ss_pred ccccHHHHHHHHHhhhccCccHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhheeeccchHHHH-HHHHhhHhH
Confidence 34677888888888888899988888777765433 1121 1224566778888899999998 566665554
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFL 287 (331)
Q Consensus 256 ~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L 287 (331)
..+|.+|+.|+++.-+.+.....+-..+..|.
T Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (831)
T PRK15180 789 LRDYTQALQYWQRLEKVNGPTEPVTRQISTCI 820 (831)
T ss_pred HHHHHHHHHHHHHHHhccCCCcchHHHHHHHH
Confidence 88999999999998887653333334444443
No 359
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=71.91 E-value=58 Score=36.25 Aligned_cols=102 Identities=12% Similarity=0.125 Sum_probs=80.3
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HcCCHHHHHHHH
Q 020094 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ--AHKDASRAESYF 266 (331)
Q Consensus 189 ~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~--~~Gd~deA~~yf 266 (331)
-+.-+.-++.-+.+++.+-..+..|-.++++ .|++++-.+.-+++.++.|..+.+|..++.-..- ..++..+++..|
T Consensus 95 ~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk-~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ 173 (881)
T KOG0128|consen 95 GNQEIRTLEEELAINSYKYAQMVQLIGLLRK-LGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELF 173 (881)
T ss_pred chhHHHHHHHHhcccccchHHHHHHHHHHHH-hcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHH
Confidence 3555666777778888888888888888776 9999999999999999999999999777654322 146778889999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020094 267 DQAVKSAPDDCYVLASYAKFLWDAGD 292 (331)
Q Consensus 267 ekAL~ldP~d~~vl~~LA~~L~~lG~ 292 (331)
++|+.- -++..+|..++.++...++
T Consensus 174 ekal~d-y~~v~iw~e~~~y~~~~~~ 198 (881)
T KOG0128|consen 174 EKALGD-YNSVPIWEEVVNYLVGFGN 198 (881)
T ss_pred HHHhcc-cccchHHHHHHHHHHhccc
Confidence 999864 4577888888888877666
No 360
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.87 E-value=1e+02 Score=33.29 Aligned_cols=115 Identities=16% Similarity=0.174 Sum_probs=72.8
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHH-------H--------------hCCCCHHHHHH---HHHHHHHHcCCHHHHHHHH
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMI-------E--------------ANPGNALLLGN---YARFLKEVRGDFAKAEELC 231 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL-------~--------------~nP~n~~~l~n---LA~~L~~~~gd~ekAee~~ 231 (331)
...+|+++..+|+++-|....+++| . +.|.|..++.. |-..+.. .|=..-|.++|
T Consensus 287 LLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~-RGC~rTA~E~c 365 (665)
T KOG2422|consen 287 LLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQ-RGCWRTALEWC 365 (665)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHh-cCChHHHHHHH
Confidence 4457888888888776666655554 3 12444444322 2222222 56678899999
Q ss_pred HHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHhCCCCHHHHHHHHHHHHHcCC
Q 020094 232 GRAILANPS-DGNILSLYADLIWQAHKDASRAESYFDQA-----VKSAPDDCYVLASYAKFLWDAGD 292 (331)
Q Consensus 232 erALeldP~-d~~al~~yA~ll~~~~Gd~deA~~yfekA-----L~ldP~d~~vl~~LA~~L~~lG~ 292 (331)
.-++.++|. ||.+...+.+.+.....+|+==+..++.+ +.+-|+-.+. ..+|.+|.....
T Consensus 366 KlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS-~AlA~f~l~~~~ 431 (665)
T KOG2422|consen 366 KLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYS-LALARFFLRKNE 431 (665)
T ss_pred HHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHH-HHHHHHHHhcCC
Confidence 999999998 99988788888777667776555555444 3445544443 445555555444
No 361
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=71.77 E-value=4.9 Score=40.36 Aligned_cols=109 Identities=13% Similarity=-0.035 Sum_probs=80.1
Q ss_pred HHhCCCcHHHHHHHHHHHHhCC-----------C--------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020094 183 SNNNHGSSSTDAYYEKMIEANP-----------G--------NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN 243 (331)
Q Consensus 183 y~s~gd~ekA~e~yerAL~~nP-----------~--------n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~ 243 (331)
.++.++|+.|..-|.++++.-- + --.+..+++.+. ...+++..|.....-+++.++....
T Consensus 232 ~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~-lk~~~~~~a~~~~~~~~~~~~s~tk 310 (372)
T KOG0546|consen 232 EFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVG-LKVKGRGGARFRTNEALRDERSKTK 310 (372)
T ss_pred hhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhc-ccccCCCcceeccccccccChhhCc
Confidence 4455677777777777665411 1 011234444443 3478899999999999999999888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 020094 244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDD 293 (331)
Q Consensus 244 al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~ 293 (331)
+++..+..++. ..++++|++.++.+....|++..+...+..+-....+.
T Consensus 311 a~~Rr~~~~~~-~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~ 359 (372)
T KOG0546|consen 311 AHYRRGQAYKL-LKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY 359 (372)
T ss_pred HHHHHHhHHHh-hhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence 88888887777 99999999999999999999998877776665555444
No 362
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=70.97 E-value=7.4 Score=30.53 Aligned_cols=17 Identities=18% Similarity=0.159 Sum_probs=10.5
Q ss_pred HcCCHHHHHHHHHHHHH
Q 020094 220 VRGDFAKAEELCGRAIL 236 (331)
Q Consensus 220 ~~gd~ekAee~~erALe 236 (331)
..|+|++|+.+|..||+
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HccCHHHHHHHHHHHHH
Confidence 35666666666666655
No 363
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=70.91 E-value=15 Score=35.79 Aligned_cols=61 Identities=10% Similarity=-0.064 Sum_probs=52.8
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA 237 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALel 237 (331)
..-++..+...++++.++..+++.+..+|-+-.++..+-.+++. .|+...|+..|+++-.+
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~-~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLV-NGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-cCCchHHHHHHHHHHHH
Confidence 44577788888999999999999999999999999888877554 99999999999988764
No 364
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=70.27 E-value=7.9 Score=30.38 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=9.7
Q ss_pred cCCHHHHHHHHHHHHH
Q 020094 221 RGDFAKAEELCGRAIL 236 (331)
Q Consensus 221 ~gd~ekAee~~erALe 236 (331)
.|+|++|+++|..||+
T Consensus 19 ~gny~eA~~lY~~ale 34 (75)
T cd02680 19 KGNAEEAIELYTEAVE 34 (75)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 5566666666666654
No 365
>PLN03138 Protein TOC75; Provisional
Probab=69.74 E-value=13 Score=41.05 Aligned_cols=13 Identities=23% Similarity=0.603 Sum_probs=5.8
Q ss_pred HHHHHHHHHhCCC
Q 020094 193 DAYYEKMIEANPG 205 (331)
Q Consensus 193 ~e~yerAL~~nP~ 205 (331)
++.+.++|...|.
T Consensus 167 e~~l~~~i~~kpG 179 (796)
T PLN03138 167 EDSFFEMVTLRPG 179 (796)
T ss_pred HHHHHHHHhcCCC
Confidence 3444444444444
No 366
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.94 E-value=1e+02 Score=28.75 Aligned_cols=108 Identities=11% Similarity=0.118 Sum_probs=71.3
Q ss_pred cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHH-----HHHHHHcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHH
Q 020094 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYA-----RFLKEVRGDFAKAEELCGRA-ILANPSDGNILSLYAD 250 (331)
Q Consensus 177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA-----~~L~~~~gd~ekAee~~erA-LeldP~d~~al~~yA~ 250 (331)
...|-+....|+-..|..+|..+-...| -|.+...+| .+|.. .|-|++-..-.+.. ..-+|--..+.-.++.
T Consensus 98 mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~lLvD-~gsy~dV~srvepLa~d~n~mR~sArEALgl 175 (221)
T COG4649 98 MRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAYLLVD-NGSYDDVSSRVEPLAGDGNPMRHSAREALGL 175 (221)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHHHhc-cccHHHHHHHhhhccCCCChhHHHHHHHHhH
Confidence 3445667778899999999998766554 333333332 33333 67788776666544 3445555666667788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLW 288 (331)
Q Consensus 251 ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~ 288 (331)
.-|+ .|++.+|..+|++... |...+....+.+.+..
T Consensus 176 Aa~k-agd~a~A~~~F~qia~-Da~aprnirqRAq~ml 211 (221)
T COG4649 176 AAYK-AGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred HHHh-ccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence 8888 9999999999988876 4444555555555444
No 367
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=68.92 E-value=58 Score=34.54 Aligned_cols=84 Identities=18% Similarity=0.160 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHH----HHHHHHHHHHHcCCH
Q 020094 190 SSTDAYYEKMIEANPG----NALLLGNYARFLKEVRGDFAKAEELCGRAILANP--SDGNI----LSLYADLIWQAHKDA 259 (331)
Q Consensus 190 ekA~e~yerAL~~nP~----n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP--~d~~a----l~~yA~ll~~~~Gd~ 259 (331)
.-|+.|++-+++..+- .+.+...||.+|.....+++.|+.++.|++.+.- +..+. ...++.++.+ .+..
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~-~~~~ 116 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFK-TNPK 116 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-cCHH
Confidence 5567777777753222 3556789999988779999999999999988874 33322 2234455554 5555
Q ss_pred HHHHHHHHHHHHhCCC
Q 020094 260 SRAESYFDQAVKSAPD 275 (331)
Q Consensus 260 deA~~yfekAL~ldP~ 275 (331)
. |..+++++++..-.
T Consensus 117 ~-a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSET 131 (608)
T ss_pred H-HHHHHHHHHHHHhc
Confidence 5 99999999988654
No 368
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=68.27 E-value=8.8 Score=25.47 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=15.8
Q ss_pred CcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094 188 GSSSTDAYYEKMIEANPGNALLLGNYARF 216 (331)
Q Consensus 188 d~ekA~e~yerAL~~nP~n~~~l~nLA~~ 216 (331)
+++.|..+|++.+...|+ +..|..||.+
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAkF 29 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAKF 29 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHHh
Confidence 345666666666666544 4555555544
No 369
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=68.01 E-value=10 Score=25.13 Aligned_cols=28 Identities=32% Similarity=0.494 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094 258 DASRAESYFDQAVKSAPDDCYVLASYAKF 286 (331)
Q Consensus 258 d~deA~~yfekAL~ldP~d~~vl~~LA~~ 286 (331)
.+++|...|++.+...| +..+|..+|.+
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyAkF 29 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYAKF 29 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHHHh
Confidence 45666667777666665 45566666554
No 370
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=67.89 E-value=13 Score=27.68 Aligned_cols=13 Identities=23% Similarity=0.245 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHh
Q 020094 190 SSTDAYYEKMIEA 202 (331)
Q Consensus 190 ekA~e~yerAL~~ 202 (331)
++|..+.++|++.
T Consensus 3 ~~A~~~~~~Av~~ 15 (69)
T PF04212_consen 3 DKAIELIKKAVEA 15 (69)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4566666666553
No 371
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=67.69 E-value=39 Score=38.21 Aligned_cols=96 Identities=14% Similarity=-0.038 Sum_probs=69.6
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHH---cC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094 181 NYSNNNHGSSSTDAYYEKMIEANPGNA---LLLGNYARFLKEV---RG---DFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 181 ~~y~s~gd~ekA~e~yerAL~~nP~n~---~~l~nLA~~L~~~---~g---d~ekAee~~erALeldP~d~~al~~yA~l 251 (331)
+.+-+.+.|++|+..|++.-.-.|+.. ++.+..|..+.++ .+ .+.+|+.-|++.-. .|.-|--|.-.|.+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 561 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKALV 561 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHHH
Confidence 455566789999999999999999764 3556666444332 23 36677777766543 45555555566776
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020094 252 IWQAHKDASRAESYFDQAVKSAPDDCY 278 (331)
Q Consensus 252 l~~~~Gd~deA~~yfekAL~ldP~d~~ 278 (331)
|.. +++++|-+++|.-|++.-|.++.
T Consensus 562 ~~~-~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 562 YQR-LGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred HHH-hhhHHHHHHHHHHHHHhcCCCCc
Confidence 766 99999999999999999887765
No 372
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=66.73 E-value=99 Score=29.33 Aligned_cols=122 Identities=12% Similarity=0.093 Sum_probs=68.6
Q ss_pred CCCcccccchHHHHHhCCCcHHHHHHHHH----------------HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020094 170 GGGSGFSGSNNNYSNNNHGSSSTDAYYEK----------------MIEANPGNALLLGNYARFLKEVRGDFAKAEELCGR 233 (331)
Q Consensus 170 ~g~~~~~~N~A~~y~s~gd~ekA~e~yer----------------AL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~er 233 (331)
.|++.++.-+|..|.+.+++.+|+.+|-. ..+..|...+.+..-|.+.+...++..-|...+..
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~ 166 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDT 166 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 35788889999999999999999887621 12336777777777777777777888888876655
Q ss_pred HHHh----CCC----------CHHHHHHHHHHHHHH--cCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020094 234 AILA----NPS----------DGNILSLYADLIWQA--HKD---ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGD 292 (331)
Q Consensus 234 ALel----dP~----------d~~al~~yA~ll~~~--~Gd---~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~ 292 (331)
-++. .|+ +...+ ++..++... .++ |..=.+.|+..|+.+|.-...+..+|..|.....
T Consensus 167 f~~~~~~~~p~~~~~~~~~~~~~Pll-nF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~~~~~L~~IG~~yFgi~~ 243 (260)
T PF04190_consen 167 FTSKLIESHPKLENSDIEYPPSYPLL-NFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPSFKEYLDKIGQLYFGIQP 243 (260)
T ss_dssp HHHHHHHH---EEEEEEEEESS-HHH-HHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHHTHHHHHHHHHHHH---S
T ss_pred HHHHHhccCcchhccccCCCCCCchH-HHHHHHHHHHhcCcHHHHHHHHHHhCccccccHHHHHHHHHHHHHHCCCCC
Confidence 5544 332 22333 444433322 233 2233344455555667666777888888876553
No 373
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=66.42 E-value=32 Score=32.69 Aligned_cols=49 Identities=14% Similarity=0.045 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHH-----hCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020094 224 FAKAEELCGRAIL-----ANPSDGNIL---SLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 224 ~ekAee~~erALe-----ldP~d~~al---~~yA~ll~~~~Gd~deA~~yfekAL~l 272 (331)
.++|.+.|+.|++ +.|.+|.-+ .+++.++|+.+++.++|....++|++.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~ 200 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 200 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4578999999976 458888543 467889999889999999777777664
No 374
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=66.38 E-value=14 Score=35.05 Aligned_cols=49 Identities=20% Similarity=0.252 Sum_probs=39.9
Q ss_pred cHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020094 189 SSSTDAYYEKMIEA-----NPGNAL---LLGNYARFLKEVRGDFAKAEELCGRAILA 237 (331)
Q Consensus 189 ~ekA~e~yerAL~~-----nP~n~~---~l~nLA~~L~~~~gd~ekAee~~erALel 237 (331)
.++|..+|++|+.+ .|.+|. +..|++.++++..++.++|+++.++|+..
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~ 200 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 200 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 36889999999874 467765 45788999999999999999988888763
No 375
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=64.99 E-value=36 Score=29.68 Aligned_cols=46 Identities=26% Similarity=0.256 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094 208 LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 208 ~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~ 254 (331)
+.+...|..... .|+|.-|.+++..++..+|+|..+....+.++..
T Consensus 71 d~vl~~A~~~~~-~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~ 116 (141)
T PF14863_consen 71 DKVLERAQAALA-AGDYQWAAELLDHLVFADPDNEEARQLKADALEQ 116 (141)
T ss_dssp HHHHHHHHHHHH-CT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 333444444333 6777777777777777777777777666665544
No 376
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=64.71 E-value=22 Score=33.30 Aligned_cols=47 Identities=32% Similarity=0.375 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020094 190 SSTDAYYEKMIEA-----NPGNAL---LLGNYARFLKEVRGDFAKAEELCGRAIL 236 (331)
Q Consensus 190 ekA~e~yerAL~~-----nP~n~~---~l~nLA~~L~~~~gd~ekAee~~erALe 236 (331)
++|..+|++|+.+ .|.+|. +..||+.++++..++.++|+++.++|+.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6777777777764 455554 3457777777777778888877777765
No 377
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=64.24 E-value=9.2 Score=26.88 Aligned_cols=25 Identities=12% Similarity=-0.045 Sum_probs=20.6
Q ss_pred cchHHHHHhCCCcHHHHHHHHHHHH
Q 020094 177 GSNNNYSNNNHGSSSTDAYYEKMIE 201 (331)
Q Consensus 177 ~N~A~~y~s~gd~ekA~e~yerAL~ 201 (331)
.++|..|..+|+++.|.+.+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4688888888888888888888874
No 378
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=64.19 E-value=1.3e+02 Score=31.84 Aligned_cols=103 Identities=13% Similarity=0.036 Sum_probs=82.2
Q ss_pred CCcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHH
Q 020094 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD--GNILSLY 248 (331)
Q Consensus 171 g~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d--~~al~~y 248 (331)
||--+.++.-.-|...+++.-|-..|+--+...|+.+.....|-.+|-. .+|-.+|..+|+++|..=-++ ..+|...
T Consensus 430 ~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~-inde~naraLFetsv~r~~~~q~k~iy~km 508 (660)
T COG5107 430 GHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIR-INDEENARALFETSVERLEKTQLKRIYDKM 508 (660)
T ss_pred CcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHH-hCcHHHHHHHHHHhHHHHHHhhhhHHHHHH
Confidence 4666777777778888999999999999999999999999999888765 899999999999988754443 4455344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020094 249 ADLIWQAHKDASRAESYFDQAVKSAPD 275 (331)
Q Consensus 249 A~ll~~~~Gd~deA~~yfekAL~ldP~ 275 (331)
...-.+ -|+...+..+=++...+-|.
T Consensus 509 i~YEs~-~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 509 IEYESM-VGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHh-hcchHHHHhHHHHHHHHcCc
Confidence 333344 78998888888888888883
No 379
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=64.04 E-value=63 Score=33.46 Aligned_cols=58 Identities=22% Similarity=0.274 Sum_probs=39.7
Q ss_pred cCCHHHHHHHHHHHH--HhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 020094 221 RGDFAKAEELCGRAI--LANPS--DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYV 279 (331)
Q Consensus 221 ~gd~ekAee~~erAL--eldP~--d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~v 279 (331)
-+.|++|.....++. +.+.+ .+.+++.++.+-.- +.+|..|.+||-+|+...|.+..+
T Consensus 222 n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkai-qldYssA~~~~~qa~rkapq~~al 283 (493)
T KOG2581|consen 222 NKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAI-QLDYSSALEYFLQALRKAPQHAAL 283 (493)
T ss_pred hHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHh-hcchhHHHHHHHHHHHhCcchhhh
Confidence 466888888887776 22223 34444334444444 899999999999999999975543
No 380
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=63.98 E-value=89 Score=26.36 Aligned_cols=108 Identities=16% Similarity=0.143 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHcC
Q 020094 190 SSTDAYYEKMIEANP---GNALLLGNYARFLKEVR---GDFAKAEELCGRAILANPS------DGNILSLYADLIWQAHK 257 (331)
Q Consensus 190 ekA~e~yerAL~~nP---~n~~~l~nLA~~L~~~~---gd~ekAee~~erALeldP~------d~~al~~yA~ll~~~~G 257 (331)
++....|++.|.... +.-+.|..|-.-+.... +.-..-...+++++..-.+ |...+ ..++.+ ..
T Consensus 2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~Ryl--kiWi~y--a~ 77 (126)
T PF08311_consen 2 EQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYL--KIWIKY--AD 77 (126)
T ss_dssp HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHH--HHHHHH--HT
T ss_pred HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHH--HHHHHH--HH
Confidence 345666777777654 33456666654433322 2344455677777765443 44443 233333 23
Q ss_pred CHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 258 DASRAESYFDQAVKSAP--DDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 258 d~deA~~yfekAL~ldP--~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
....+...|+.+....= ..+..|..+|.++...|++++|++.++
T Consensus 78 ~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 78 LSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp TBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44488888888887644 778999999999999999999998875
No 381
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=63.96 E-value=14 Score=25.97 Aligned_cols=32 Identities=44% Similarity=0.537 Sum_probs=18.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 020094 230 LCGRAILANPSDGNILSLYADLIWQAHKDASRA 262 (331)
Q Consensus 230 ~~erALeldP~d~~al~~yA~ll~~~~Gd~deA 262 (331)
-|.+||..+|++...+..||.-+.+ +|+-++|
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e-~gdp~ra 35 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDE-HGDPARA 35 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHH-cCCHHHH
Confidence 3455566666666555566665555 5555444
No 382
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.91 E-value=47 Score=35.96 Aligned_cols=108 Identities=14% Similarity=-0.018 Sum_probs=62.5
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~ 255 (331)
....|.|+.+++-.++|++. .++ ++..+-+| ...|+++-|.++..+ -++..-|..++.+...
T Consensus 617 rt~va~Fle~~g~~e~AL~~-------s~D-~d~rFela----l~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~- 678 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALEL-------STD-PDQRFELA----LKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALS- 678 (794)
T ss_pred hhhHHhHhhhccchHhhhhc-------CCC-hhhhhhhh----hhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhh-
Confidence 34566666666655555543 332 22223222 125777766554433 3456777788888777
Q ss_pred cCCHHHHHHHHHHHHHh--------CCCCHHHHHHHH-------------HHHHHcCCchHHHHhhh
Q 020094 256 HKDASRAESYFDQAVKS--------APDDCYVLASYA-------------KFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 256 ~Gd~deA~~yfekAL~l--------dP~d~~vl~~LA-------------~~L~~lG~~eEa~~~~~ 301 (331)
.+++..|.++|.+|..+ .-.+..-+..+| .+|+..|+.++....+.
T Consensus 679 ~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 679 AGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred cccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHH
Confidence 88888999988888665 123444333333 24566666666655554
No 383
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=63.65 E-value=27 Score=37.00 Aligned_cols=48 Identities=6% Similarity=0.055 Sum_probs=37.0
Q ss_pred CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020094 186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRA 234 (331)
Q Consensus 186 ~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erA 234 (331)
.|+.-.|-.-...+++..|.+|......+.+... .|+|+.|.+.+..+
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~-lg~ye~~~~~~s~~ 349 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSH-LGYYEQAYQDISDV 349 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHH-hhhHHHHHHHhhch
Confidence 4777788888888899999999888777777554 88888877766443
No 384
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.28 E-value=84 Score=36.25 Aligned_cols=85 Identities=15% Similarity=0.029 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020094 205 GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYA 284 (331)
Q Consensus 205 ~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA 284 (331)
+.|..|..+|.+... .+...+|++-|-|| +||..+.....+.-+ .|.|++-++|+.-|-+.. ..+++-..+.
T Consensus 1102 n~p~vWsqlakAQL~-~~~v~dAieSyika-----dDps~y~eVi~~a~~-~~~~edLv~yL~MaRkk~-~E~~id~eLi 1173 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQ-GGLVKDAIESYIKA-----DDPSNYLEVIDVASR-TGKYEDLVKYLLMARKKV-REPYIDSELI 1173 (1666)
T ss_pred CChHHHHHHHHHHHh-cCchHHHHHHHHhc-----CCcHHHHHHHHHHHh-cCcHHHHHHHHHHHHHhh-cCccchHHHH
Confidence 556777777777443 66667777777654 445444444454555 777777777766555442 2344445555
Q ss_pred HHHHHcCCchHHH
Q 020094 285 KFLWDAGDDEEEE 297 (331)
Q Consensus 285 ~~L~~lG~~eEa~ 297 (331)
.+|.+.++..|-+
T Consensus 1174 ~AyAkt~rl~elE 1186 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELE 1186 (1666)
T ss_pred HHHHHhchHHHHH
Confidence 5666666654443
No 385
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=62.95 E-value=1.1e+02 Score=29.07 Aligned_cols=124 Identities=15% Similarity=0.113 Sum_probs=68.9
Q ss_pred cchHHHHHhCCCcHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHH
Q 020094 177 GSNNNYSNNNHGSSSTDAYYEKMIEA-----NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN------PSDGNIL 245 (331)
Q Consensus 177 ~N~A~~y~s~gd~ekA~e~yerAL~~-----nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeld------P~d~~al 245 (331)
+..|..+.+.+++..|-++..-+++. .+.+.....++..++......-..-..+..+||+-. -.++..+
T Consensus 14 ~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH 93 (260)
T PF04190_consen 14 YSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELH 93 (260)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHH
T ss_pred HHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHH
Confidence 34566777777777766665554443 345566666777776552222223344445554432 2488999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH----------------HHhCCCCHHHH-HHHHHHHHHcCCchHHHHhhh
Q 020094 246 SLYADLIWQAHKDASRAESYFDQA----------------VKSAPDDCYVL-ASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 246 ~~yA~ll~~~~Gd~deA~~yfekA----------------L~ldP~d~~vl-~~LA~~L~~lG~~eEa~~~~~ 301 (331)
..+|..+|. .+++.+|+.+|-.. .+..|...+.+ .....-|..+++...|.+.+.
T Consensus 94 ~~~a~~~~~-e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~ 165 (260)
T PF04190_consen 94 HLLAEKLWK-EGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFD 165 (260)
T ss_dssp HHHHHHHHH-TT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHH
T ss_pred HHHHHHHHh-hccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999998 99999999888422 11234444333 333444557778777765444
No 386
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=62.44 E-value=54 Score=25.05 Aligned_cols=41 Identities=24% Similarity=0.290 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020094 190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP 239 (331)
Q Consensus 190 ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP 239 (331)
++|+.++++|+..+-. .+|..++.. |.+|+++|.++++..|
T Consensus 4 ~~A~~l~~~Av~~D~~-----g~y~eA~~~----Y~~aie~l~~~~k~e~ 44 (75)
T cd02678 4 QKAIELVKKAIEEDNA-----GNYEEALRL----YQHALEYFMHALKYEK 44 (75)
T ss_pred HHHHHHHHHHHHHHHc-----CCHHHHHHH----HHHHHHHHHHHHhhCC
Confidence 5677777777553321 222223222 4555555555556666
No 387
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=62.36 E-value=39 Score=30.05 Aligned_cols=81 Identities=11% Similarity=0.086 Sum_probs=48.5
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020094 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF 266 (331)
Q Consensus 187 gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yf 266 (331)
++...-..+|-+ .+-.+..+-..|. ++-. ++..++-.+.+....+-+-.+|.++..+|..|-. .|+..+|.+++
T Consensus 70 ~NlKrVi~C~~~---~n~~se~vD~ALd-~lv~-~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~k-lg~~r~~~ell 143 (161)
T PF09205_consen 70 GNLKRVIECYAK---RNKLSEYVDLALD-ILVK-QGKKDQLDKIYNELKKNEEINPEFLVKIANAYKK-LGNTREANELL 143 (161)
T ss_dssp S-THHHHHHHHH---TT---HHHHHHHH-HHHH-TT-HHHHHHHHHHH-----S-HHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred cchHHHHHHHHH---hcchHHHHHHHHH-HHHH-hccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH-hcchhhHHHHH
Confidence 455666666633 2333332222222 2233 7888888888888887677788888888888887 99999999999
Q ss_pred HHHHHhC
Q 020094 267 DQAVKSA 273 (331)
Q Consensus 267 ekAL~ld 273 (331)
++|.+..
T Consensus 144 ~~ACekG 150 (161)
T PF09205_consen 144 KEACEKG 150 (161)
T ss_dssp HHHHHTT
T ss_pred HHHHHhc
Confidence 9998754
No 388
>PLN03138 Protein TOC75; Provisional
Probab=62.03 E-value=6.3 Score=43.43 Aligned_cols=15 Identities=13% Similarity=0.169 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhCCCC
Q 020094 227 AEELCGRAILANPSD 241 (331)
Q Consensus 227 Aee~~erALeldP~d 241 (331)
.++.+.++|.+.|..
T Consensus 166 ~e~~l~~~i~~kpG~ 180 (796)
T PLN03138 166 TEDSFFEMVTLRPGG 180 (796)
T ss_pred hHHHHHHHHhcCCCC
Confidence 455666666666653
No 389
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=61.91 E-value=19 Score=28.20 Aligned_cols=15 Identities=27% Similarity=0.257 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHhC
Q 020094 224 FAKAEELCGRAILAN 238 (331)
Q Consensus 224 ~ekAee~~erALeld 238 (331)
|.+|+++|..++...
T Consensus 29 Y~~aie~l~~~~~~~ 43 (76)
T cd02681 29 YKEAAQLLIYAEMAG 43 (76)
T ss_pred HHHHHHHHHHHHHhc
Confidence 455555555554444
No 390
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=61.67 E-value=44 Score=25.24 Aligned_cols=43 Identities=23% Similarity=0.304 Sum_probs=23.4
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020094 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS 240 (331)
Q Consensus 189 ~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~ 240 (331)
+++|..+..+|+..+-. ..+..++.. |.+|+++|.+++...|+
T Consensus 5 ~~~A~~li~~Av~~d~~-----g~~~eAl~~----Y~~a~e~l~~~~~~~~~ 47 (77)
T smart00745 5 LSKAKELISKALKADEA-----GDYEEALEL----YKKAIEYLLEGIKVESD 47 (77)
T ss_pred HHHHHHHHHHHHHHHHc-----CCHHHHHHH----HHHHHHHHHHHhccCCC
Confidence 46777777777665431 122223233 55666666666666653
No 391
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=61.56 E-value=14 Score=23.07 Aligned_cols=15 Identities=33% Similarity=0.264 Sum_probs=9.0
Q ss_pred CHHHHHHHHHHHHHh
Q 020094 223 DFAKAEELCGRAILA 237 (331)
Q Consensus 223 d~ekAee~~erALel 237 (331)
|..+|..+|++|.+.
T Consensus 20 d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 20 DLEKALEYYKKAAEL 34 (36)
T ss_pred CHHHHHHHHHHHHHc
Confidence 566666666666543
No 392
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=61.30 E-value=16 Score=28.57 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=6.7
Q ss_pred cCCHHHHHHHHHHHH
Q 020094 221 RGDFAKAEELCGRAI 235 (331)
Q Consensus 221 ~gd~ekAee~~erAL 235 (331)
.|+|++|+.+|.++|
T Consensus 19 ~g~y~eAl~~Y~~ai 33 (77)
T cd02683 19 EGRFQEALVCYQEGI 33 (77)
T ss_pred hccHHHHHHHHHHHH
Confidence 444444444444443
No 393
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=61.27 E-value=27 Score=37.35 Aligned_cols=78 Identities=17% Similarity=0.179 Sum_probs=37.9
Q ss_pred CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 020094 186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESY 265 (331)
Q Consensus 186 ~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~y 265 (331)
....+.+....+.-+-........+..-|.++.. .++-++|-.+|++.+..+|+|.+ +.|+.-++. .|-..+|...
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~ 96 (578)
T PRK15490 21 EKKLAQAVALIDSELPTEALTSLAMLKKAEFLHD-VNETERAYALYETLIAQNNDEAR--YEYARRLYN-TGLAKDAQLI 96 (578)
T ss_pred HhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhh-hhhhHhHHHHHHHHHHhCCcchH--HHHHHHHHh-hhhhhHHHHH
Confidence 3344444444444433333344444444444433 45555555666666665555332 235555555 5555555554
Q ss_pred HH
Q 020094 266 FD 267 (331)
Q Consensus 266 fe 267 (331)
++
T Consensus 97 ~~ 98 (578)
T PRK15490 97 LK 98 (578)
T ss_pred HH
Confidence 44
No 394
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=61.09 E-value=7.5 Score=43.58 Aligned_cols=6 Identities=50% Similarity=0.556 Sum_probs=2.5
Q ss_pred hhhhhh
Q 020094 68 RKEIRD 73 (331)
Q Consensus 68 ~~~~~~ 73 (331)
.+|+|.
T Consensus 1130 lnmiRd 1135 (1282)
T KOG0921|consen 1130 LNMIRD 1135 (1282)
T ss_pred HHHHHH
Confidence 344444
No 395
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=60.65 E-value=1.2e+02 Score=30.95 Aligned_cols=55 Identities=11% Similarity=-0.011 Sum_probs=39.8
Q ss_pred cchHHHHHhCCCcHHHHHHHHHHHHhCCC--CH---HHHHHHH--HHHHHHcCCHHHHHHHHH
Q 020094 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPG--NA---LLLGNYA--RFLKEVRGDFAKAEELCG 232 (331)
Q Consensus 177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~--n~---~~l~nLA--~~L~~~~gd~ekAee~~e 232 (331)
..++..+++.++|..|...|++++...+. .. ..+..+. ...|. .-++++|.++++
T Consensus 134 ~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD-~fd~~~A~~~L~ 195 (380)
T TIGR02710 134 QGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWD-RFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHH-ccCHHHHHHHHh
Confidence 34667888999999999999999998642 22 2223332 34455 778999999998
No 396
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=60.65 E-value=65 Score=36.10 Aligned_cols=91 Identities=20% Similarity=0.161 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 020094 206 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPS---------DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (331)
Q Consensus 206 n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~---------d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d 276 (331)
+|.+...+|..+.. ..+|.+|..+..++-..-+. -+.+....+.+... .+++++|+++.+.++..-|.+
T Consensus 414 ~P~Lvll~aW~~~s-~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~-~~~~e~a~~lar~al~~L~~~ 491 (894)
T COG2909 414 TPRLVLLQAWLLAS-QHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALN-RGDPEEAEDLARLALVQLPEA 491 (894)
T ss_pred CchHHHHHHHHHHH-ccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhcccc
Confidence 45555667777655 88999999999988766554 22333345566666 899999999999999998866
Q ss_pred HH-----HHHHHHHHHHHcCCchHHHH
Q 020094 277 CY-----VLASYAKFLWDAGDDEEEEQ 298 (331)
Q Consensus 277 ~~-----vl~~LA~~L~~lG~~eEa~~ 298 (331)
.+ ++..++.+..-.|++++|-.
T Consensus 492 ~~~~r~~~~sv~~~a~~~~G~~~~Al~ 518 (894)
T COG2909 492 AYRSRIVALSVLGEAAHIRGELTQALA 518 (894)
T ss_pred cchhhhhhhhhhhHHHHHhchHHHHHH
Confidence 54 45667778888888888853
No 397
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=60.57 E-value=34 Score=36.55 Aligned_cols=56 Identities=20% Similarity=0.205 Sum_probs=45.8
Q ss_pred hHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020094 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS 240 (331)
Q Consensus 179 ~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~ 240 (331)
-|.++-..++.++|.++|++.+..+|+ +.++.||.-++. .|-...|...+. ++.|.
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~ 103 (578)
T PRK15490 48 KAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYN-TGLAKDAQLILK---KVSNG 103 (578)
T ss_pred HhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHh-hhhhhHHHHHHH---HhCcc
Confidence 467888889999999999999999999 667788888776 888888877777 44454
No 398
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=60.09 E-value=32 Score=32.19 Aligned_cols=78 Identities=17% Similarity=0.142 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----CC--HHHHHHHHHHHHHhCCCC
Q 020094 207 ALLLGNYARFLKEV----RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH----KD--ASRAESYFDQAVKSAPDD 276 (331)
Q Consensus 207 ~~~l~nLA~~L~~~----~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~----Gd--~deA~~yfekAL~ldP~d 276 (331)
+.--+.||...... .+++..|+++|..|-.+ +++.+-..++.++|... .+ ..+|+.|+.||.+ -++
T Consensus 68 ~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~--n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCd--l~~ 143 (248)
T KOG4014|consen 68 PKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA--NIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACD--LED 143 (248)
T ss_pred cHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc--CCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhcc--CCC
Confidence 44445555443221 23577777777777663 34555545666666432 12 5577777777754 467
Q ss_pred HHHHHHHHHHHH
Q 020094 277 CYVLASYAKFLW 288 (331)
Q Consensus 277 ~~vl~~LA~~L~ 288 (331)
..+.+.|...+.
T Consensus 144 ~~aCf~LS~m~~ 155 (248)
T KOG4014|consen 144 GEACFLLSTMYM 155 (248)
T ss_pred chHHHHHHHHHh
Confidence 777776665554
No 399
>PF12854 PPR_1: PPR repeat
Probab=60.09 E-value=20 Score=23.20 Aligned_cols=27 Identities=19% Similarity=0.106 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020094 241 DGNILSLYADLIWQAHKDASRAESYFDQ 268 (331)
Q Consensus 241 d~~al~~yA~ll~~~~Gd~deA~~yfek 268 (331)
|...|..+...+.+ .|+.++|++.|++
T Consensus 6 d~~ty~~lI~~~Ck-~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCK-AGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHH-CCCHHHHHHHHHh
Confidence 34445455555666 7777777777664
No 400
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.02 E-value=65 Score=34.16 Aligned_cols=61 Identities=18% Similarity=0.053 Sum_probs=44.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh------CC-CCHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCC
Q 020094 212 NYARFLKEVRGDFAKAEELCGRAILA------NP-SDGNILSLYADLIWQAHKD-ASRAESYFDQAVKSAP 274 (331)
Q Consensus 212 nLA~~L~~~~gd~ekAee~~erALel------dP-~d~~al~~yA~ll~~~~Gd-~deA~~yfekAL~ldP 274 (331)
.+|.++ +..|+-..|.++|..+++. ++ --|.+++.+|.++|. ++. +.+|.+++.+|-+...
T Consensus 454 L~g~~l-R~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~-~~g~~~e~~~~L~kAr~~~~ 522 (546)
T KOG3783|consen 454 LKGVIL-RNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWD-LGGGLKEARALLLKAREYAS 522 (546)
T ss_pred HHHHHH-HHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHh-cccChHHHHHHHHHHHhhcc
Confidence 345554 4488888888888888733 22 257788888888888 555 8899999998887763
No 401
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=58.67 E-value=36 Score=35.40 Aligned_cols=109 Identities=15% Similarity=-0.010 Sum_probs=55.1
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhC--------CCC--HHHHHHHHH-------HHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020094 180 NNYSNNNHGSSSTDAYYEKMIEAN--------PGN--ALLLGNYAR-------FLKEVRGDFAKAEELCGRAILANPSDG 242 (331)
Q Consensus 180 A~~y~s~gd~ekA~e~yerAL~~n--------P~n--~~~l~nLA~-------~L~~~~gd~ekAee~~erALeldP~d~ 242 (331)
|.-+++.++|..|..-|..+|++= |.. ++-...++. +.|+..++.+-|+....|.|-+||.++
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 444556667777777777777651 111 111122221 123345666777777777777777655
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHH
Q 020094 243 NILSLYADLIWQAHKDASRAESYFDQAVK---SAPDDCYVLASYAKFLWD 289 (331)
Q Consensus 243 ~al~~yA~ll~~~~Gd~deA~~yfekAL~---ldP~d~~vl~~LA~~L~~ 289 (331)
.-+..-|.+... ..+|.+|-+-+.-|.- ++..+......+...||.
T Consensus 263 rnHLrqAavfR~-LeRy~eAarSamia~ymywl~g~~~q~~S~lIklyWq 311 (569)
T PF15015_consen 263 RNHLRQAAVFRR-LERYSEAARSAMIADYMYWLSGGSEQRISKLIKLYWQ 311 (569)
T ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHHH
Confidence 554333333332 5666666554443322 233333334445555654
No 402
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=58.36 E-value=20 Score=39.42 Aligned_cols=51 Identities=10% Similarity=0.013 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 242 GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 242 ~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
.+++.+.+...++ +..+++|.+||.+.-. ..+++.+|++++.+++-++..+
T Consensus 796 e~A~r~ig~~fa~-~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~LE~la~ 846 (1189)
T KOG2041|consen 796 EDAFRNIGETFAE-MMEWEEAAKYYSYCGD--------TENQIECLYRLELFGELEVLAR 846 (1189)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhHHHHHH
Confidence 4677777777777 7778888888765432 3455566666666655555443
No 403
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.95 E-value=39 Score=35.81 Aligned_cols=94 Identities=20% Similarity=0.109 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHcCCHHHHHHH
Q 020094 190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN----ILSLYADLIWQAHKDASRAESY 265 (331)
Q Consensus 190 ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~----al~~yA~ll~~~~Gd~deA~~y 265 (331)
+...+.+.....+.|.++..+...|.++.. .|+.+.|+..+...+. +..-. .++..++++.- +.+|.+|-.+
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~-~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~-~~~~~~aad~ 325 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSI-KGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVG-QHQYSRAADS 325 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHH-cccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHH-HHHHHHHhhH
Confidence 556666666777899999999999999877 7778889999998888 33222 22245555555 7789999999
Q ss_pred HHHHHHhCC-CCHHHHHHHHHHH
Q 020094 266 FDQAVKSAP-DDCYVLASYAKFL 287 (331)
Q Consensus 266 fekAL~ldP-~d~~vl~~LA~~L 287 (331)
+....+... ..+..-+..|-+|
T Consensus 326 ~~~L~desdWS~a~Y~Yfa~cc~ 348 (546)
T KOG3783|consen 326 FDLLRDESDWSHAFYTYFAGCCL 348 (546)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHH
Confidence 999998877 3343333333333
No 404
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=57.76 E-value=15 Score=28.52 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=9.6
Q ss_pred cCCHHHHHHHHHHHHH
Q 020094 221 RGDFAKAEELCGRAIL 236 (331)
Q Consensus 221 ~gd~ekAee~~erALe 236 (331)
.++|++|..+|..+|+
T Consensus 19 ~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 19 EGDYEAAFEFYRAGVD 34 (75)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 4666666666666554
No 405
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=57.56 E-value=11 Score=35.64 Aligned_cols=95 Identities=9% Similarity=-0.051 Sum_probs=50.2
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHH------------HHHHHHHHHHHcCCH-HHH-HHHHHHHHHh--CCCCHHH
Q 020094 181 NYSNNNHGSSSTDAYYEKMIEANPGNALL------------LGNYARFLKEVRGDF-AKA-EELCGRAILA--NPSDGNI 244 (331)
Q Consensus 181 ~~y~s~gd~ekA~e~yerAL~~nP~n~~~------------l~nLA~~L~~~~gd~-ekA-ee~~erALel--dP~d~~a 244 (331)
.|.+..|+|+.|+++.+-||+.+=.-|+- ....|..... .|+. +-+ ...+.....- -|+...+
T Consensus 91 vW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~-ag~~~e~~~~~~~~~l~~~~dmpd~vrA 169 (230)
T PHA02537 91 VWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAAS-AGESVEPYFLRVFLDLTTEWDMPDEVRA 169 (230)
T ss_pred eeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHH-cCCCCChHHHHHHHHHHhcCCCChHHHH
Confidence 45667799999999999999986333221 2222222222 2321 111 1112222110 1333333
Q ss_pred --HHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCCCC
Q 020094 245 --LSLYADLIWQ--------AHKDASRAESYFDQAVKSAPDD 276 (331)
Q Consensus 245 --l~~yA~ll~~--------~~Gd~deA~~yfekAL~ldP~d 276 (331)
+...|..+.. ..++...|+.++++|++++|+.
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 2222332321 1457789999999999999853
No 406
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=57.52 E-value=19 Score=24.50 Aligned_cols=29 Identities=17% Similarity=0.102 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020094 208 LLLGNYARFLKEVRGDFAKAEELCGRAILA 237 (331)
Q Consensus 208 ~~l~nLA~~L~~~~gd~ekAee~~erALel 237 (331)
+++..||.+-.+ ..+|++|++-|++++++
T Consensus 2 dv~~~Lgeisle-~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLE-NENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHH-hccHHHHHHHHHHHHHH
Confidence 456677877555 88899999999999875
No 407
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=57.43 E-value=40 Score=29.44 Aligned_cols=60 Identities=20% Similarity=0.107 Sum_probs=39.8
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 020094 232 GRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDD 293 (331)
Q Consensus 232 erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~ 293 (331)
++.+++--.-..++ ..+.-.+. .|++.-|..+.+.++..+|+|..+..-.+.+|..++..
T Consensus 61 ~~~v~l~GG~d~vl-~~A~~~~~-~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 61 KRYVELAGGADKVL-ERAQAALA-AGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHTTCHHHHH-HHHHHHHH-CT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHH-HHHHHHHH-CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 33444443323333 55666666 88888899999999999998888888888888877654
No 408
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=56.96 E-value=73 Score=35.57 Aligned_cols=113 Identities=20% Similarity=0.149 Sum_probs=59.6
Q ss_pred hHHHHHhCCCcHHHHHHHHH------HHHh----CCCCHHH-HHHHHHHHHHHcCCHHHHHHHHHH------HHHhC---
Q 020094 179 NNNYSNNNHGSSSTDAYYEK------MIEA----NPGNALL-LGNYARFLKEVRGDFAKAEELCGR------AILAN--- 238 (331)
Q Consensus 179 ~A~~y~s~gd~ekA~e~yer------AL~~----nP~n~~~-l~nLA~~L~~~~gd~ekAee~~er------ALeld--- 238 (331)
.+++|.+.+++++|++||++ ++++ .|...-- --..|.-+.. .|+++.|+-+|-. ||+..
T Consensus 667 agdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~-~~q~daainhfiea~~~~kaieaai~a 745 (1636)
T KOG3616|consen 667 AGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQ-IGQLDAAINHFIEANCLIKAIEAAIGA 745 (1636)
T ss_pred hhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHH-HHhHHHHHHHHHHhhhHHHHHHHHhhh
Confidence 45688889999999999874 4443 2322111 1122333322 5666666555432 22211
Q ss_pred ---CC---------CH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 239 ---PS---------DG----NILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 239 ---P~---------d~----~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
|. |. .++-..+..+-. .|+|+.|+++|.++=. .-.....|-+.|++++|.+..+
T Consensus 746 kew~kai~ildniqdqk~~s~yy~~iadhyan-~~dfe~ae~lf~e~~~--------~~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 746 KEWKKAISILDNIQDQKTASGYYGEIADHYAN-KGDFEIAEELFTEADL--------FKDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred hhhhhhHhHHHHhhhhccccccchHHHHHhcc-chhHHHHHHHHHhcch--------hHHHHHHHhccccHHHHHHHHH
Confidence 10 10 011123333333 6888888888876522 2233455667888888877655
No 409
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=56.59 E-value=95 Score=27.64 Aligned_cols=112 Identities=12% Similarity=0.080 Sum_probs=62.2
Q ss_pred hCCCcHHHHHHHHHHHHhCCC--------------CHHH----HHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHH
Q 020094 185 NNHGSSSTDAYYEKMIEANPG--------------NALL----LGNYARFLKE-VRGDFAKAEELCGRAILANPSDGNIL 245 (331)
Q Consensus 185 s~gd~ekA~e~yerAL~~nP~--------------n~~~----l~nLA~~L~~-~~gd~ekAee~~erALeldP~d~~al 245 (331)
..|..++..+...+.+.-.+- +..+ +-..|.++.. ..+++..-+.+|-+. +-.+-++
T Consensus 14 ldG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~---n~~se~v- 89 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKR---NKLSEYV- 89 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHT---T---HHH-
T ss_pred HhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHh---cchHHHH-
Confidence 345666667776666654431 2222 2333433211 257788888777553 3333333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 246 SLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 246 ~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
.+|.-+.-.+|+.++=.+.+...++.+..++.++..+|.+|.++|+..++...++
T Consensus 90 -D~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~ 144 (161)
T PF09205_consen 90 -DLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLK 144 (161)
T ss_dssp -HHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred -HHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 3343333338888888888888887666789999999999999999999987665
No 410
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=55.79 E-value=69 Score=24.16 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020094 190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS 240 (331)
Q Consensus 190 ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~ 240 (331)
++|+.+..+|+..+-. .+|..++.. |.+|++.|.+++...|+
T Consensus 4 ~~a~~l~~~Av~~D~~-----g~~~~Al~~----Y~~a~e~l~~~~~~~~~ 45 (75)
T cd02656 4 QQAKELIKQAVKEDED-----GNYEEALEL----YKEALDYLLQALKAEKE 45 (75)
T ss_pred HHHHHHHHHHHHHHHc-----CCHHHHHHH----HHHHHHHHHHHhccCCC
Confidence 4556666666543322 222222222 44555555555555553
No 411
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=55.33 E-value=23 Score=26.83 Aligned_cols=16 Identities=38% Similarity=0.557 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHhCC
Q 020094 224 FAKAEELCGRAILANP 239 (331)
Q Consensus 224 ~ekAee~~erALeldP 239 (331)
+++|.++..+|++.+-
T Consensus 5 ~~~A~~li~~Av~~d~ 20 (77)
T smart00745 5 LSKAKELISKALKADE 20 (77)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666666655443
No 412
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=54.51 E-value=34 Score=26.20 Aligned_cols=14 Identities=43% Similarity=0.423 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHhC
Q 020094 225 AKAEELCGRAILAN 238 (331)
Q Consensus 225 ekAee~~erALeld 238 (331)
++|+.++.+|++.|
T Consensus 4 ~~A~~l~~~Av~~D 17 (75)
T cd02678 4 QKAIELVKKAIEED 17 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666665443
No 413
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=54.36 E-value=51 Score=38.21 Aligned_cols=117 Identities=18% Similarity=0.156 Sum_probs=80.2
Q ss_pred chHHHHHhCCCcHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC
Q 020094 178 SNNNYSNNNHGSSSTDAYYEKMIEA--------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA--------NPSD 241 (331)
Q Consensus 178 N~A~~y~s~gd~ekA~e~yerAL~~--------nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALel--------dP~d 241 (331)
-+|+.+...+++++|+.+.+++.-+ .|+....+.+++.+.+. ..+...|...+.+|.++ .|.-
T Consensus 978 ~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~-~~~~~~al~~~~ra~~l~~Ls~ge~hP~~ 1056 (1236)
T KOG1839|consen 978 SLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFA-VKNLSGALKSLNRALKLKLLSSGEDHPPT 1056 (1236)
T ss_pred HHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHh-ccCccchhhhHHHHHHhhccccCCCCCch
Confidence 4678888889999999887766554 24556667777766554 66888899999888876 2444
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCchHH
Q 020094 242 GNILSLYADLIWQAHKDASRAESYFDQAVKSAP--------DDCYVLASYAKFLWDAGDDEEE 296 (331)
Q Consensus 242 ~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP--------~d~~vl~~LA~~L~~lG~~eEa 296 (331)
..+..++..++.. .++++.|+.|.+.|+++.- .....+..++..+...+++.-+
T Consensus 1057 a~~~~nle~l~~~-v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~a 1118 (1236)
T KOG1839|consen 1057 ALSFINLELLLLG-VEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNA 1118 (1236)
T ss_pred hhhhhHHHHHHhh-HHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHH
Confidence 4444455555554 7899999999999998732 3344555556666666655443
No 414
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=54.25 E-value=1.7e+02 Score=28.40 Aligned_cols=111 Identities=9% Similarity=-0.043 Sum_probs=69.4
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHH---HHHcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094 182 YSNNNHGSSSTDAYYEKMIEANPG--NALLLGNYARFL---KEVRGDFA---KAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 182 ~y~s~gd~ekA~e~yerAL~~nP~--n~~~l~nLA~~L---~~~~gd~e---kAee~~erALeldP~d~~al~~yA~ll~ 253 (331)
-+...++|++-.+.|.+..+..-+ ..+..+.++... +......+ .-.+.++.=++..|+...++...|.++.
T Consensus 9 ~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~~~ 88 (277)
T PF13226_consen 9 ELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMYWV 88 (277)
T ss_pred HHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 345668899999999888765432 222112222111 11011111 3455566668999999988877776654
Q ss_pred HHc---------------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020094 254 QAH---------------------KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGD 292 (331)
Q Consensus 254 ~~~---------------------Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~ 292 (331)
... .-.+.|..++.+|++++|+...++..+..+-...|+
T Consensus 89 ~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fge 148 (277)
T PF13226_consen 89 HRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGE 148 (277)
T ss_pred HHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCC
Confidence 421 224689999999999999988877777666555554
No 415
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=54.20 E-value=25 Score=27.61 Aligned_cols=10 Identities=0% Similarity=-0.054 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 020094 190 SSTDAYYEKM 199 (331)
Q Consensus 190 ekA~e~yerA 199 (331)
++|+.+.++|
T Consensus 4 ~kai~Lv~~A 13 (75)
T cd02680 4 ERAHFLVTQA 13 (75)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 416
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=54.11 E-value=45 Score=35.68 Aligned_cols=61 Identities=10% Similarity=0.118 Sum_probs=42.6
Q ss_pred ccchHHHHHhC--CCcHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020094 176 SGSNNNYSNNN--HGSSSTDAYYEKMIEA-----NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA 237 (331)
Q Consensus 176 ~~N~A~~y~s~--gd~ekA~e~yerAL~~-----nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALel 237 (331)
.+|||++-.-. .+...++++|.+||.. +..+..-+..+|.++++ .++|.+|+.++-.|-..
T Consensus 280 Lg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR-~~~~~eA~~~Wa~aa~V 347 (618)
T PF05053_consen 280 LGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYR-HKRYREALRSWAEAADV 347 (618)
T ss_dssp HHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred hhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHH-HHHHHHHHHHHHHHHHH
Confidence 67788776654 4567889999999885 44556667778888777 99999999999887543
No 417
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=54.08 E-value=31 Score=24.33 Aligned_cols=36 Identities=33% Similarity=0.360 Sum_probs=30.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 020094 194 AYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEEL 230 (331)
Q Consensus 194 e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~ 230 (331)
..|.++|..+|++.-....||.-|.+ .|+..+|+.+
T Consensus 3 ~all~AI~~~P~ddt~RLvYADWL~e-~gdp~raefI 38 (42)
T TIGR02996 3 EALLRAILAHPDDDTPRLVYADWLDE-HGDPARAEFI 38 (42)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHH-cCCHHHHhHH
Confidence 45788999999999999999999877 8998777543
No 418
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=54.06 E-value=25 Score=26.65 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHh
Q 020094 225 AKAEELCGRAILA 237 (331)
Q Consensus 225 ekAee~~erALel 237 (331)
.+|+++..+|++.
T Consensus 4 ~~a~~l~~~Av~~ 16 (75)
T cd02656 4 QQAKELIKQAVKE 16 (75)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555443
No 419
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=52.85 E-value=64 Score=27.22 Aligned_cols=73 Identities=11% Similarity=0.131 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhCCCC------HH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCC
Q 020094 190 SSTDAYYEKMIEANPGN------AL---LLGNYARFLKEVRGDFAKAEELCGRAILA--NPSDGNILSLYADLIWQAHKD 258 (331)
Q Consensus 190 ekA~e~yerAL~~nP~n------~~---~l~nLA~~L~~~~gd~ekAee~~erALel--dP~d~~al~~yA~ll~~~~Gd 258 (331)
..-...++++++...++ +. +|..||.+ ...+.+.|..+... .-+-+..|..+|.++.. .|+
T Consensus 43 ~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~-------~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~-~~~ 114 (126)
T PF08311_consen 43 SGLLELLERCIRKFKDDERYKNDERYLKIWIKYADL-------SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEK-RGN 114 (126)
T ss_dssp HHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTT-------BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHH-TT-
T ss_pred hHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHH-------ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHH-cCC
Confidence 44456666666665433 22 33444433 22777788777664 45688888888888888 999
Q ss_pred HHHHHHHHHHHH
Q 020094 259 ASRAESYFDQAV 270 (331)
Q Consensus 259 ~deA~~yfekAL 270 (331)
+++|.+.|+++|
T Consensus 115 ~~~A~~I~~~Gi 126 (126)
T PF08311_consen 115 FKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC
Confidence 999999999886
No 420
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=52.54 E-value=1.4e+02 Score=30.78 Aligned_cols=74 Identities=19% Similarity=0.049 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094 210 LGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD 289 (331)
Q Consensus 210 l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~ 289 (331)
....+.+|.. +|-++.|++. .+|+...+.+ ..+ .|+++.|.+..+ .-++...|..||.....
T Consensus 298 ~~~i~~fL~~-~G~~e~AL~~--------~~D~~~rFeL---Al~-lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEK-KGYPELALQF--------VTDPDHRFEL---ALQ-LGNLDIALEIAK-----ELDDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHH-TT-HHHHHHH--------SS-HHHHHHH---HHH-CT-HHHHHHHCC-----CCSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-CCCHHHHHhh--------cCChHHHhHH---HHh-cCCHHHHHHHHH-----hcCcHHHHHHHHHHHHH
Confidence 4455566544 6766666554 3456666544 445 888888877442 33588899999999999
Q ss_pred cCCchHHHHhhh
Q 020094 290 AGDDEEEEQDNE 301 (331)
Q Consensus 290 lG~~eEa~~~~~ 301 (331)
.|+.+-|+++++
T Consensus 360 ~g~~~lAe~c~~ 371 (443)
T PF04053_consen 360 QGNIELAEECYQ 371 (443)
T ss_dssp TTBHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 999999999887
No 421
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.28 E-value=2.5e+02 Score=28.44 Aligned_cols=91 Identities=19% Similarity=0.161 Sum_probs=55.3
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCCC----C----HHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHhCCCCHHHH
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPG----N----ALLLGNYARFLKEVRGDFAKAEELCGRA--ILANPSDGNIL 245 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~----n----~~~l~nLA~~L~~~~gd~ekAee~~erA--LeldP~d~~al 245 (331)
...+|..|.+.+++..|-..+.- +..+.. + ......+|.++.+ .+|..+|+.+..|+ +..+-.|....
T Consensus 106 rl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe-~~d~veae~~inRaSil~a~~~Ne~Lq 183 (399)
T KOG1497|consen 106 RLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLE-DDDKVEAEAYINRASILQAESSNEQLQ 183 (399)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHhhhcccCHHHH
Confidence 34688999999999888776532 222221 1 1234456666544 88899999999888 44455666655
Q ss_pred HH----HHHHHHHHcCCHHHHHHHHHHH
Q 020094 246 SL----YADLIWQAHKDASRAESYFDQA 269 (331)
Q Consensus 246 ~~----yA~ll~~~~Gd~deA~~yfekA 269 (331)
.. ||.++-. .++|-||-..|-+.
T Consensus 184 ie~kvc~ARvlD~-krkFlEAAqrYyel 210 (399)
T KOG1497|consen 184 IEYKVCYARVLDY-KRKFLEAAQRYYEL 210 (399)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 44 4444444 56655555444343
No 422
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=52.12 E-value=8.1 Score=42.50 Aligned_cols=116 Identities=16% Similarity=0.122 Sum_probs=70.9
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHH--cCCHHHHHHHHHHHHHhCC-CCHHHHH
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALL------LGNYARFLKEV--RGDFAKAEELCGRAILANP-SDGNILS 246 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~------l~nLA~~L~~~--~gd~ekAee~~erALeldP-~d~~al~ 246 (331)
-.|+---|..+.+|+.-+++.+.. +.-|+...+ -+.||-+|.++ -||.++|+.....+++.+- -.++.+.
T Consensus 204 V~nlmlSyRDvQdY~amirLVe~L-k~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~C 282 (1226)
T KOG4279|consen 204 VSNLMLSYRDVQDYDAMIRLVEDL-KRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYC 282 (1226)
T ss_pred HHHHHhhhccccchHHHHHHHHHH-HhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceee
Confidence 345555666777777777766653 444543322 23455454442 4678888888888887753 4455554
Q ss_pred HHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 020094 247 LYADLIWQA--------HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDD 293 (331)
Q Consensus 247 ~yA~ll~~~--------~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~ 293 (331)
..+.+|-+. .+..+.|+.+|++|++..| ..+.-.|++.++...|+.
T Consensus 283 l~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP-~~~sGIN~atLL~aaG~~ 336 (1226)
T KOG4279|consen 283 LCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEP-LEYSGINLATLLRAAGEH 336 (1226)
T ss_pred eechhhhhhhhccCCcchhhHHHHHHHHHHHhccCc-hhhccccHHHHHHHhhhh
Confidence 444443221 2456788888999988888 344456777777777653
No 423
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=51.56 E-value=33 Score=21.80 Aligned_cols=15 Identities=27% Similarity=0.268 Sum_probs=9.1
Q ss_pred CHHHHHHHHHHHHHh
Q 020094 223 DFAKAEELCGRAILA 237 (331)
Q Consensus 223 d~ekAee~~erALel 237 (331)
|+++|.++|++|.+.
T Consensus 23 d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 23 DYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHc
Confidence 356666666666554
No 424
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=50.84 E-value=36 Score=34.82 Aligned_cols=28 Identities=21% Similarity=0.058 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094 225 AKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 225 ekAee~~erALeldP~d~~al~~yA~ll~~ 254 (331)
.+|++|+++|.. -++|..|+..|.++..
T Consensus 335 ~~Al~yL~kA~d--~ddPetWv~vAEa~I~ 362 (404)
T PF12753_consen 335 KKALEYLKKAQD--EDDPETWVDVAEAMID 362 (404)
T ss_dssp HHHHHHHHHHHH--S--TTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc--cCChhHHHHHHHHHhh
Confidence 345555555544 3345555555544443
No 425
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=50.64 E-value=64 Score=30.22 Aligned_cols=90 Identities=11% Similarity=0.125 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHH
Q 020094 205 GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA----HKDASRAESYFDQAVKSAPDDCYVL 280 (331)
Q Consensus 205 ~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~----~Gd~deA~~yfekAL~ldP~d~~vl 280 (331)
..|+.-..|+.++.-.+.+|++|...|..--.-+..---.+ .|+..++.- .++...|+++|+.|.. -+++...
T Consensus 32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~y~kSCy-KyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC 108 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENSYPKSCY-KYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQAC 108 (248)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcHHHH-HhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHH
Confidence 34445455555555556778888877777666554433333 454433321 2456778888877765 4566777
Q ss_pred HHHHHHHHHcCCchHHH
Q 020094 281 ASYAKFLWDAGDDEEEE 297 (331)
Q Consensus 281 ~~LA~~L~~lG~~eEa~ 297 (331)
.+++.++|.-...++++
T Consensus 109 ~~~gLl~~~g~~~r~~d 125 (248)
T KOG4014|consen 109 RYLGLLHWNGEKDRKAD 125 (248)
T ss_pred hhhhhhhccCcCCccCC
Confidence 77788777766555443
No 426
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.72 E-value=75 Score=35.54 Aligned_cols=80 Identities=18% Similarity=0.246 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020094 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILA-NPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAK 285 (331)
Q Consensus 207 ~~~l~nLA~~L~~~~gd~ekAee~~erALel-dP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~ 285 (331)
..++..||..++. .||+++|..+|-++|.. +| +.+...+ .+ ..+..+=..|++..++..=.+.+-..-|-.
T Consensus 368 ~~i~~kYgd~Ly~-Kgdf~~A~~qYI~tI~~le~--s~Vi~kf----Ld-aq~IknLt~YLe~L~~~gla~~dhttlLLn 439 (933)
T KOG2114|consen 368 AEIHRKYGDYLYG-KGDFDEATDQYIETIGFLEP--SEVIKKF----LD-AQRIKNLTSYLEALHKKGLANSDHTTLLLN 439 (933)
T ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHcccCCh--HHHHHHh----cC-HHHHHHHHHHHHHHHHcccccchhHHHHHH
Confidence 5577899999887 99999999999999853 44 3333222 11 223334445555555543333333344555
Q ss_pred HHHHcCCch
Q 020094 286 FLWDAGDDE 294 (331)
Q Consensus 286 ~L~~lG~~e 294 (331)
+|.++++.+
T Consensus 440 cYiKlkd~~ 448 (933)
T KOG2114|consen 440 CYIKLKDVE 448 (933)
T ss_pred HHHHhcchH
Confidence 566666543
No 427
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=49.63 E-value=1e+02 Score=23.96 Aligned_cols=43 Identities=9% Similarity=0.231 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 020094 190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD 241 (331)
Q Consensus 190 ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d 241 (331)
..|..+.++|++.+-. .+|..++.. |.+|+++|..+++..|+.
T Consensus 4 ~~a~~l~~~Ave~D~~-----g~y~eAl~~----Y~~aie~l~~~lk~e~d~ 46 (77)
T cd02683 4 LAAKEVLKRAVELDQE-----GRFQEALVC----YQEGIDLLMQVLKGTKDE 46 (77)
T ss_pred HHHHHHHHHHHHHHHh-----ccHHHHHHH----HHHHHHHHHHHHhhCCCH
Confidence 5677777777665432 334444444 777788888888877743
No 428
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=49.48 E-value=39 Score=37.50 Aligned_cols=104 Identities=18% Similarity=0.119 Sum_probs=77.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020094 193 DAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 193 ~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~l 272 (331)
+.+|++.++..|..-.-|.+|-.+... .|+.-.-...++||+.-.+.+...|..|+..+-...+-.+.+...+-+|+..
T Consensus 298 ~~~~e~~~q~~~~~~q~~~~yidfe~~-~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~ 376 (881)
T KOG0128|consen 298 LFKFERLVQKEPIKDQEWMSYIDFEKK-SGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRS 376 (881)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcC
Confidence 334555666666655566677777544 8888888889999999999999999888776655467777888999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCchHHH
Q 020094 273 APDDCYVLASYAKFLWDAGDDEEEE 297 (331)
Q Consensus 273 dP~d~~vl~~LA~~L~~lG~~eEa~ 297 (331)
+|-...+|-.+-.++.+.....+.+
T Consensus 377 cp~tgdL~~rallAleR~re~~~vI 401 (881)
T KOG0128|consen 377 CPWTGDLWKRALLALERNREEITVI 401 (881)
T ss_pred CchHHHHHHHHHHHHHhcCcchhhH
Confidence 9987777777766666666655554
No 429
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=49.19 E-value=43 Score=25.94 Aligned_cols=12 Identities=33% Similarity=0.238 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHH
Q 020094 225 AKAEELCGRAIL 236 (331)
Q Consensus 225 ekAee~~erALe 236 (331)
.+|+.++.+|++
T Consensus 4 ~~Ai~lv~~Av~ 15 (75)
T cd02684 4 EKAIALVVQAVK 15 (75)
T ss_pred HHHHHHHHHHHH
Confidence 445555555544
No 430
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.93 E-value=84 Score=36.27 Aligned_cols=68 Identities=19% Similarity=0.113 Sum_probs=51.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHh
Q 020094 221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQD 299 (331)
Q Consensus 221 ~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~ 299 (331)
.+.+++|.++.++. +.+.+|..+|..-.+ .+...+|+.-|-|| +|+..|.....+-.+.|.+++-.+-
T Consensus 1088 i~~ldRA~efAe~~-----n~p~vWsqlakAQL~-~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~y 1155 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERC-----NEPAVWSQLAKAQLQ-GGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKY 1155 (1666)
T ss_pred hhhHHHHHHHHHhh-----CChHHHHHHHHHHHh-cCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHH
Confidence 45556665555553 568999999999888 99999999988665 5667778888888888888776543
No 431
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=48.48 E-value=2.4e+02 Score=29.57 Aligned_cols=77 Identities=16% Similarity=0.129 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHHHhC-CC-----CHHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020094 222 GDFAKAEELCGRAILAN-PS-----DGNIL----SLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG 291 (331)
Q Consensus 222 gd~ekAee~~erALeld-P~-----d~~al----~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG 291 (331)
++|.-|++++.+...+. |. |.... -.-..++|..+++-+.|+...-+.|.++|.....++.-|.++..++
T Consensus 197 ~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~Le 276 (569)
T PF15015_consen 197 GRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLE 276 (569)
T ss_pred HHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHH
Confidence 45666777776554332 22 22111 1122344444899999999999999999988888888899999999
Q ss_pred CchHHHH
Q 020094 292 DDEEEEQ 298 (331)
Q Consensus 292 ~~eEa~~ 298 (331)
++.||..
T Consensus 277 Ry~eAar 283 (569)
T PF15015_consen 277 RYSEAAR 283 (569)
T ss_pred HHHHHHH
Confidence 8888853
No 432
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=48.30 E-value=99 Score=26.46 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 259 ASRAESYFDQAVKSAP--DDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 259 ~deA~~yfekAL~ldP--~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
.+++...|..+....= ..+..|..+|.++...|++.+|++.++
T Consensus 79 ~~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 79 CDEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3456777777666544 667788899999999999999998875
No 433
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=48.20 E-value=32 Score=27.03 Aligned_cols=45 Identities=22% Similarity=0.132 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020094 225 AKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCY 278 (331)
Q Consensus 225 ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~ 278 (331)
+.|.+++.+||+.|-.... .-|.++| .+|+..+.+++...|++.-
T Consensus 4 ~~A~~~a~~AVe~D~~gr~---~eAi~~Y------~~aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 4 EMARKYAINAVKAEKEGNA---EDAITNY------KKAIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHHHHHHhcCCH---HHHHHHH------HHHHHHHHHHHHhCCChHH
Confidence 3466677777766543221 1122222 3555666666666776654
No 434
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=48.15 E-value=90 Score=29.14 Aligned_cols=24 Identities=29% Similarity=0.177 Sum_probs=12.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 020094 211 GNYARFLKEVRGDFAKAEELCGRAI 235 (331)
Q Consensus 211 ~nLA~~L~~~~gd~ekAee~~erAL 235 (331)
..+|..++. .|++++|.++|+++.
T Consensus 182 ~~~A~ey~~-~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 182 LEMAEEYFR-LGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHHHH-CCCHHHHHHHHHHHH
Confidence 344444433 555555555555553
No 435
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=48.09 E-value=1.2e+02 Score=37.53 Aligned_cols=65 Identities=20% Similarity=0.177 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 020094 205 GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSA 273 (331)
Q Consensus 205 ~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ld 273 (331)
.-.+.|.++|.+ .++.|.++.|..++..|.+..+ +.+....|..+|. .|+-..|+.++++.+.++
T Consensus 1668 ~~ge~wLqsAri-aR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~-~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1668 RLGECWLQSARI-ARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQ-TGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hhHHHHHHHHHH-HHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHh-hccHHHHHHHHHHHHHhh
Confidence 457889999999 4559999999999999999886 5566679999999 999999999999999664
No 436
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=48.02 E-value=96 Score=24.77 Aligned_cols=40 Identities=15% Similarity=0.156 Sum_probs=26.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094 214 ARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 214 A~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~ 253 (331)
+..+....++...++.-...+++.+|+||.++..|-..+-
T Consensus 13 ~~~~~~~a~~~~~~l~~Al~~l~~~pdnP~~LA~~Qa~l~ 52 (80)
T PRK15326 13 SAKFDTGVDNLQTQVTEALDKLAAKPSDPALLAAYQSKLS 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 3333444555666777777778888988888766655443
No 437
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=47.09 E-value=74 Score=29.70 Aligned_cols=58 Identities=10% Similarity=-0.122 Sum_probs=36.5
Q ss_pred cccchHHHHHhCCCcHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020094 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPG------NALLLGNYARFLKEVRGDFAKAEELCGR 233 (331)
Q Consensus 175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~------n~~~l~nLA~~L~~~~gd~ekAee~~er 233 (331)
....+|..|+..|++++|+.+|+.+...-.. ...++..+..+... .++.+..+.+.-+
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~-~~~~~~~l~~~le 243 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKR-LGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHH
Confidence 3668999999999999999999998654221 12233333344333 5555555544443
No 438
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=46.90 E-value=2.6e+02 Score=28.24 Aligned_cols=107 Identities=12% Similarity=-0.009 Sum_probs=58.5
Q ss_pred chHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH-------HHHHcC-C------HHHHHHHHHHHHHh------
Q 020094 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARF-------LKEVRG-D------FAKAEELCGRAILA------ 237 (331)
Q Consensus 178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~-------L~~~~g-d------~ekAee~~erALel------ 237 (331)
-+|++++-.++|+-|..+|+.+.+..-++ .+|..||.+ +.. .+ . -+....+++.|+..
T Consensus 213 ~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D-kaw~~~A~~~Em~alsl~~-~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~ 290 (414)
T PF12739_consen 213 RLADLAFMLRDYELAYSTYRLLKKDFKND-KAWKYLAGAQEMAALSLLM-QGQSISAKIRKDEIEPYLENAYYTYLKSAL 290 (414)
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHhhc-hhHHHHHhHHHHHHHHHHh-cCCCCccccccccHHHHHHHHHHHHHhhhc
Confidence 38999999999999999999988855433 333334432 222 22 1 11333444443321
Q ss_pred ----CC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC--C---CHHHHHHHHHHH
Q 020094 238 ----NP-SDGNILSLYADLIWQAHKDASRAESYFDQAVKS--AP--D---DCYVLASYAKFL 287 (331)
Q Consensus 238 ----dP-~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~l--dP--~---d~~vl~~LA~~L 287 (331)
.| .-..+....+.++.. .+.+.+|...+-++... +. . .+-++..++.++
T Consensus 291 ~~~~~~~~a~R~~ll~~ell~~-~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~ 351 (414)
T PF12739_consen 291 PRCSLPYYALRCALLLAELLKS-RGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY 351 (414)
T ss_pred cccccccchHHHHHHHHHHHHh-cCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh
Confidence 11 222333233343333 78877777666665555 22 3 445566666666
No 439
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=46.21 E-value=35 Score=27.01 Aligned_cols=17 Identities=12% Similarity=-0.054 Sum_probs=10.5
Q ss_pred CcHHHHHHHHHHHHhCC
Q 020094 188 GSSSTDAYYEKMIEANP 204 (331)
Q Consensus 188 d~ekA~e~yerAL~~nP 204 (331)
.|++|.++..++|..+.
T Consensus 4 ~~~~A~~~I~kaL~~dE 20 (79)
T cd02679 4 YYKQAFEEISKALRADE 20 (79)
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 45667777766666443
No 440
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=45.94 E-value=58 Score=32.12 Aligned_cols=120 Identities=13% Similarity=0.032 Sum_probs=81.4
Q ss_pred HHHHhCCCc-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094 181 NYSNNNHGS-SSTDAYYEKMIEANPGNALLLGNYARFLKE-------VRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 181 ~~y~s~gd~-ekA~e~yerAL~~nP~n~~~l~nLA~~L~~-------~~gd~ekAee~~erALeldP~d~~al~~yA~ll 252 (331)
+...+..+| ..|++.-+..+..||..-.+|+.--.++.. ..--+++-..++..+++-+|.+..+|...-.++
T Consensus 39 ~a~r~kkeys~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~L 118 (328)
T COG5536 39 RAKRRKKEYSVRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWML 118 (328)
T ss_pred HHHHhhhhcCHHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHH
Confidence 334444555 788888888888887766555433333322 112257788899999999999999996555544
Q ss_pred HHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---HHcCCchHHHHhhh
Q 020094 253 WQAH--KDASRAESYFDQAVKSAPDDCYVLASYAKFL---WDAGDDEEEEQDNE 301 (331)
Q Consensus 253 ~~~~--Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L---~~lG~~eEa~~~~~ 301 (331)
-. . ..+..-....++.++.|+.|..+|-....++ .++.++.....++|
T Consensus 119 e~-~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~e 171 (328)
T COG5536 119 EL-FPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELE 171 (328)
T ss_pred Hh-CCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHH
Confidence 33 3 5678888889999999999888876665555 34455555555454
No 441
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=45.84 E-value=33 Score=20.38 Aligned_cols=24 Identities=13% Similarity=0.008 Sum_probs=12.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 020094 247 LYADLIWQAHKDASRAESYFDQAVK 271 (331)
Q Consensus 247 ~yA~ll~~~~Gd~deA~~yfekAL~ 271 (331)
.+...+.. .|++++|+..|++..+
T Consensus 5 ~li~~~~~-~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 5 SLISGYCK-MGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHc-cchHHHHHHHHHHHhH
Confidence 33344444 5666666666655443
No 442
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=45.43 E-value=1.4e+02 Score=23.09 Aligned_cols=42 Identities=12% Similarity=0.237 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020094 190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS 240 (331)
Q Consensus 190 ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~ 240 (331)
.+|..++.+|++.+-. .+|..++.. |.+|+++|..+++..++
T Consensus 4 ~~A~~l~~~Ave~d~~-----~~y~eA~~~----Y~~~i~~~~~~~k~e~~ 45 (75)
T cd02677 4 EQAAELIRLALEKEEE-----GDYEAAFEF----YRAGVDLLLKGVQGDSS 45 (75)
T ss_pred HHHHHHHHHHHHHHHH-----hhHHHHHHH----HHHHHHHHHHHhccCCC
Confidence 6677777777765543 445555444 77888888888877654
No 443
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=45.39 E-value=81 Score=33.83 Aligned_cols=65 Identities=18% Similarity=0.156 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020094 206 NALLLGNYARFLKE-VRGDFAKAEELCGRAILAN-----PSDGNILSLYADLIWQAHKDASRAESYFDQAVK 271 (331)
Q Consensus 206 n~~~l~nLA~~L~~-~~gd~ekAee~~erALeld-----P~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ 271 (331)
.|.++.+||.+... ...+-..++++|.+||... -...+-|..+++.+|+ .+++.+|+.++-.|-+
T Consensus 276 YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR-~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 276 YPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYR-HKRYREALRSWAEAAD 346 (618)
T ss_dssp -HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred CchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHH-HHHHHHHHHHHHHHHH
Confidence 47777778776322 1233466899999998762 3334444457888888 9999999988877644
No 444
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=43.03 E-value=52 Score=26.02 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=10.7
Q ss_pred CHHHHHHHHHHHHHhCC
Q 020094 223 DFAKAEELCGRAILANP 239 (331)
Q Consensus 223 d~ekAee~~erALeldP 239 (331)
-|++|.++..+||..+-
T Consensus 4 ~~~~A~~~I~kaL~~dE 20 (79)
T cd02679 4 YYKQAFEEISKALRADE 20 (79)
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 45667677766666553
No 445
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=42.59 E-value=1.6e+02 Score=31.52 Aligned_cols=104 Identities=16% Similarity=0.061 Sum_probs=69.6
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 020094 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAI-LANPSDGNILSLYADLIWQAHKDASRAESYFD 267 (331)
Q Consensus 189 ~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erAL-eldP~d~~al~~yA~ll~~~~Gd~deA~~yfe 267 (331)
...+..|+.++-+..+++...|..+|.......++..+|..++.+.- .++|..-.-+..+..-+....+++..|..++.
T Consensus 44 ~a~s~~yl~qa~qs~~~~~~~~~llAa~al~~e~k~~qA~~Ll~ql~~~Ltd~Q~~~~~LL~ael~la~~q~~~Al~~L~ 123 (604)
T COG3107 44 NASSQFYLQQAQQSSGEQQNDWLLLAARALVEEGKTAQAQALLNQLPQELTDAQRAEKSLLAAELALAQKQPAAALQQLA 123 (604)
T ss_pred chhHHHHHHHHhhcCchhhhhHHHHHHHHHHHcCChHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhccChHHHHHHHh
Confidence 46777788888888888888887777555555999999999998886 77776555554454444444889999999887
Q ss_pred HHHHhC-CCCHH--HHHHHHHHHHHcCC
Q 020094 268 QAVKSA-PDDCY--VLASYAKFLWDAGD 292 (331)
Q Consensus 268 kAL~ld-P~d~~--vl~~LA~~L~~lG~ 292 (331)
+..-.+ |.+.. .|...+.++...|+
T Consensus 124 ~~~~~~ls~~Qq~Ry~q~~a~a~ea~~~ 151 (604)
T COG3107 124 KLLPADLSQNQQARYYQARADALEARGD 151 (604)
T ss_pred hcchhhcCHHHHHHHHHHHHHHHhcccc
Confidence 654432 33333 33334444444433
No 446
>PF15469 Sec5: Exocyst complex component Sec5
Probab=41.67 E-value=1.5e+02 Score=26.17 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=15.7
Q ss_pred HcCCHHHHHHHHHHHHHhCC
Q 020094 220 VRGDFAKAEELCGRAILANP 239 (331)
Q Consensus 220 ~~gd~ekAee~~erALeldP 239 (331)
..++|+.++..|.+|-.+--
T Consensus 98 ~~~dy~~~i~dY~kak~l~~ 117 (182)
T PF15469_consen 98 KKGDYDQAINDYKKAKSLFE 117 (182)
T ss_pred HcCcHHHHHHHHHHHHHHHH
Confidence 36899999999988876543
No 447
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=39.92 E-value=67 Score=19.15 Aligned_cols=22 Identities=14% Similarity=0.193 Sum_probs=13.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 020094 249 ADLIWQAHKDASRAESYFDQAVK 271 (331)
Q Consensus 249 A~ll~~~~Gd~deA~~yfekAL~ 271 (331)
...+.. .|++++|..+|.+..+
T Consensus 7 i~~~~~-~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 7 IDGLCK-AGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHH-CCCHHHHHHHHHHHHH
Confidence 333444 6777777777766554
No 448
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=39.43 E-value=1.3e+02 Score=21.00 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=10.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 020094 248 YADLIWQAHKDASRAESYFDQAV 270 (331)
Q Consensus 248 yA~ll~~~~Gd~deA~~yfekAL 270 (331)
+|..|.+ +|+++.|...+++.+
T Consensus 5 LA~ayie-~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIE-MGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHH-cCChHHHHHHHHHHH
Confidence 4444444 444444444444444
No 449
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=39.42 E-value=70 Score=31.48 Aligned_cols=43 Identities=19% Similarity=0.138 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 020094 224 FAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFD 267 (331)
Q Consensus 224 ~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfe 267 (331)
+-+|+-+++.++..+|.|..+...+..++.. .|-...|...|.
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~-LG~~~~A~~~~~ 241 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSL-LGAGSLALEHYE 241 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 5668888888888888888888666666665 888888877775
No 450
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=38.69 E-value=1.7e+02 Score=29.74 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 020094 242 GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVL 280 (331)
Q Consensus 242 ~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl 280 (331)
-.++...++++.+ .|+.++|...|++|+++.++..+-.
T Consensus 365 ~~~h~~RadlL~r-Lgr~~eAr~aydrAi~La~~~aer~ 402 (415)
T COG4941 365 HLYHAARADLLAR-LGRVEEARAAYDRAIALARNAAERA 402 (415)
T ss_pred cccHHHHHHHHHH-hCChHHHHHHHHHHHHhcCChHHHH
Confidence 3444456777777 8888888888888888887665543
No 451
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=38.68 E-value=61 Score=36.09 Aligned_cols=86 Identities=13% Similarity=0.067 Sum_probs=56.9
Q ss_pred CCcHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020094 187 HGSSSTDAYYEKMIEANPG-NALLLGNYARFLKEV--------RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (331)
Q Consensus 187 gd~ekA~e~yerAL~~nP~-n~~~l~nLA~~L~~~--------~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~G 257 (331)
|+.++|+...-.+++.+.. .|+.+..-|.++... .+-.+.|+++|++|.+..|.-.--. +++.++...=.
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGI-N~atLL~aaG~ 335 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGI-NLATLLRAAGE 335 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccc-cHHHHHHHhhh
Confidence 6889999999999888654 455555555554321 1235779999999999999744433 56666665233
Q ss_pred CHHHHHHHHHHHHHhC
Q 020094 258 DASRAESYFDQAVKSA 273 (331)
Q Consensus 258 d~deA~~yfekAL~ld 273 (331)
+|+..++.-.-+++++
T Consensus 336 ~Fens~Elq~IgmkLn 351 (1226)
T KOG4279|consen 336 HFENSLELQQIGMKLN 351 (1226)
T ss_pred hccchHHHHHHHHHHH
Confidence 4666666665666653
No 452
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=38.43 E-value=81 Score=36.67 Aligned_cols=111 Identities=16% Similarity=0.106 Sum_probs=84.3
Q ss_pred cHHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCH
Q 020094 189 SSSTDAYYE-KMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA--------NPSDGNILSLYADLIWQAHKDA 259 (331)
Q Consensus 189 ~ekA~e~ye-rAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALel--------dP~d~~al~~yA~ll~~~~Gd~ 259 (331)
..+++.++. .+-...|..+..+..+|.+++. .+++++|+.+.++|.-+ .|+....+-+++.+.+. .++.
T Consensus 954 ~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~-~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~-~~~~ 1031 (1236)
T KOG1839|consen 954 LPESLNLLNNVMGVLHPEVASKYRSLAKLSNR-LGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFA-VKNL 1031 (1236)
T ss_pred hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhh-hcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHh-ccCc
Confidence 456666777 4555689999999999988776 99999999998888644 24566677677766666 7888
Q ss_pred HHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094 260 SRAESYFDQAVKS--------APDDCYVLASYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 260 deA~~yfekAL~l--------dP~d~~vl~~LA~~L~~lG~~eEa~~~~~ 301 (331)
..|...+.++.++ .|.-+.+.-++..++...++++.+....+
T Consensus 1032 ~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le 1081 (1236)
T KOG1839|consen 1032 SGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLE 1081 (1236)
T ss_pred cchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHH
Confidence 8999999998887 45455566777777777788777766555
No 453
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=38.38 E-value=64 Score=35.99 Aligned_cols=117 Identities=19% Similarity=0.130 Sum_probs=61.5
Q ss_pred CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH-HHHH
Q 020094 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILS-LYAD 250 (331)
Q Consensus 172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~-~yA~ 250 (331)
.++.....|+-|.+.++|+.|+++|.++=. ++-|...+-+.|+..+|.++.++... |.+..+++ ..+.
T Consensus 764 ~s~yy~~iadhyan~~dfe~ae~lf~e~~~---------~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakae 832 (1636)
T KOG3616|consen 764 ASGYYGEIADHYANKGDFEIAEELFTEADL---------FKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAE 832 (1636)
T ss_pred ccccchHHHHHhccchhHHHHHHHHHhcch---------hHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHH
Confidence 344566778888888999999998866522 11121222234555555554444432 43333331 1122
Q ss_pred HHHHHcCCHHHHHHHHH------HHHH-----------------hCCCC-HHHHHHHHHHHHHcCCchHHHHhh
Q 020094 251 LIWQAHKDASRAESYFD------QAVK-----------------SAPDD-CYVLASYAKFLWDAGDDEEEEQDN 300 (331)
Q Consensus 251 ll~~~~Gd~deA~~yfe------kAL~-----------------ldP~d-~~vl~~LA~~L~~lG~~eEa~~~~ 300 (331)
-+-+ +|+|.+|+++|- +|++ ..|+. .+.+..++.-|...|+..+|+..+
T Consensus 833 dlde-hgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 833 DLDE-HGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred hHHh-hcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHH
Confidence 2222 555555544431 1211 12322 356677788888888888877543
No 454
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=38.36 E-value=73 Score=24.63 Aligned_cols=47 Identities=15% Similarity=0.094 Sum_probs=24.7
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 020094 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNIL 245 (331)
Q Consensus 189 ~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al 245 (331)
.++|+.++.+|+..+-. .+|..++.. |.+|+++|..+++..+ |+...
T Consensus 3 l~~Ai~lv~~Av~~D~~-----g~y~eA~~l----Y~~ale~~~~~~k~e~-~~~~k 49 (75)
T cd02684 3 LEKAIALVVQAVKKDQR-----GDAAAALSL----YCSALQYFVPALHYET-DAQRK 49 (75)
T ss_pred HHHHHHHHHHHHHHHHh-----ccHHHHHHH----HHHHHHHHHHHHhhCC-CHHHH
Confidence 46778888888664321 223333333 5555666666665553 44443
No 455
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=37.48 E-value=65 Score=33.01 Aligned_cols=98 Identities=10% Similarity=-0.056 Sum_probs=53.2
Q ss_pred ccchHHHHHhCCCcHHHHHHHHHHHHhCC--------C-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020094 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANP--------G-NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILS 246 (331)
Q Consensus 176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP--------~-n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~ 246 (331)
.-.+.+++.-.|||..|+...+.. .++. . ....++.+| +.+...++|.+|++.|...+.-=-.....+.
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvG-FaylMlrRY~DAir~f~~iL~yi~r~k~~~~ 202 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVG-FAYLMLRRYADAIRTFSQILLYIQRTKNQYH 202 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 446778888889999999887652 2222 1 122233333 4455589999999999888642111110000
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020094 247 LYADLIWQAHKDASRAESYFDQAVKSAPD 275 (331)
Q Consensus 247 ~yA~ll~~~~Gd~deA~~yfekAL~ldP~ 275 (331)
.-..-+-...+..|++..++--++.+.|.
T Consensus 203 ~~~~q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 203 QRSYQYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred cccchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 00000000024556666666677777773
No 456
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=37.47 E-value=1e+02 Score=19.20 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=12.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHH
Q 020094 228 EELCGRAILANPSDGNILSLY 248 (331)
Q Consensus 228 ee~~erALeldP~d~~al~~y 248 (331)
+++..+++..+|.|..+|...
T Consensus 3 l~~~~~~l~~~pknys~W~yR 23 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYR 23 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHH
Confidence 455566666666666666433
No 457
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=37.14 E-value=86 Score=23.23 Aligned_cols=13 Identities=46% Similarity=0.406 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHh
Q 020094 225 AKAEELCGRAILA 237 (331)
Q Consensus 225 ekAee~~erALel 237 (331)
++|..+..+|++.
T Consensus 3 ~~A~~~~~~Av~~ 15 (69)
T PF04212_consen 3 DKAIELIKKAVEA 15 (69)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555443
No 458
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=36.91 E-value=2.3e+02 Score=28.43 Aligned_cols=57 Identities=18% Similarity=0.216 Sum_probs=41.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCCCH-HHHHHH--HHHHHHHcCCHHHHHHHHHHHHHh
Q 020094 214 ARFLKEVRGDFAKAEELCGRAILA-NPSDG-NILSLY--ADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 214 A~~L~~~~gd~ekAee~~erALel-dP~d~-~al~~y--A~ll~~~~Gd~deA~~yfekAL~l 272 (331)
+..++. .++|..|.+++..++.. .+... ..+..+ +...|+ .-++++|..++++.+..
T Consensus 138 a~~l~n-~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD-~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFN-RYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWD-RFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHh-cCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHH
Confidence 334454 89999999999999986 44333 233233 344688 89999999999988765
No 459
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=36.86 E-value=1.8e+02 Score=29.44 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=32.4
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 020094 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNIL 245 (331)
Q Consensus 189 ~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al 245 (331)
.++|+++..+|+..+.. .+|..++.. |..|++||..+|+-.-++..+.
T Consensus 7 l~kaI~lv~kA~~eD~a-----~nY~eA~~l----Y~~aleYF~~~lKYE~~~~kaK 54 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDEDNA-----KNYEEALRL----YQNALEYFLHALKYEANNKKAK 54 (439)
T ss_pred HHHHHHHHHHHhhhcch-----hchHHHHHH----HHHHHHHHHHHHHhhhcChhHH
Confidence 37888888888765432 345555544 7778888888887776666444
No 460
>PHA00370 III attachment protein
Probab=35.93 E-value=82 Score=30.54 Aligned_cols=14 Identities=7% Similarity=-0.244 Sum_probs=5.9
Q ss_pred CCHHHHHHHHHHHH
Q 020094 257 KDASRAESYFDQAV 270 (331)
Q Consensus 257 Gd~deA~~yfekAL 270 (331)
++..|++...++..
T Consensus 253 geVYe~~I~CdKId 266 (297)
T PHA00370 253 GKVYEFIIGCDKIN 266 (297)
T ss_pred cchhhhhhcchhHH
Confidence 44444444444433
No 461
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=35.82 E-value=2.5e+02 Score=23.11 Aligned_cols=75 Identities=11% Similarity=0.075 Sum_probs=48.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH---------HHHhCCCCHHHHHHHHHHHHHcC
Q 020094 221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQ---------AVKSAPDDCYVLASYAKFLWDAG 291 (331)
Q Consensus 221 ~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfek---------AL~ldP~d~~vl~~LA~~L~~lG 291 (331)
.+.......+++.++..++.++.+...+..++.. . +..+.+.+++. |+.+.... ..|.....+|.+.|
T Consensus 20 ~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~-~-~~~~ll~~l~~~~~~yd~~~~~~~c~~~-~l~~~~~~l~~k~~ 96 (140)
T smart00299 20 RNLLEELIPYLESALKLNSENPALQTKLIELYAK-Y-DPQKEIERLDNKSNHYDIEKVGKLCEKA-KLYEEAVELYKKDG 96 (140)
T ss_pred CCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH-H-CHHHHHHHHHhccccCCHHHHHHHHHHc-CcHHHHHHHHHhhc
Confidence 4678889999999999988888888666666554 3 44566666662 33333311 12445555566667
Q ss_pred CchHHHH
Q 020094 292 DDEEEEQ 298 (331)
Q Consensus 292 ~~eEa~~ 298 (331)
++++|..
T Consensus 97 ~~~~Al~ 103 (140)
T smart00299 97 NFKDAIV 103 (140)
T ss_pred CHHHHHH
Confidence 7666643
No 462
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=35.75 E-value=2.6e+02 Score=28.03 Aligned_cols=125 Identities=12% Similarity=-0.080 Sum_probs=0.0
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHH
Q 020094 182 YSNNNHGSSSTDAYYEKMIEANPGN--ALLLGNYARFLKEVRGDFAKAEELCGRAILAN------PSDGNILSLYADLIW 253 (331)
Q Consensus 182 ~y~s~gd~ekA~e~yerAL~~nP~n--~~~l~nLA~~L~~~~gd~ekAee~~erALeld------P~d~~al~~yA~ll~ 253 (331)
+-.+..++++-.+..+++-+.|... .+++.++|.+++. .+|.+.+.+++++.+..+ -+--.....++.++-
T Consensus 88 ~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~q-i~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~ 166 (412)
T COG5187 88 LKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQ-IMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYG 166 (412)
T ss_pred HHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhc
Q ss_pred HHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCchHHHHhhhhhhcccCCCCCCC
Q 020094 254 QAHKDASRAESYFDQAVKSAP---DDCYVLASYAKFLWDAGDDEEEEQDNEESQHQTDHSHTSP 314 (331)
Q Consensus 254 ~~~Gd~deA~~yfekAL~ldP---~d~~vl~~LA~~L~~lG~~eEa~~~~~~~~~~~~~~~~~~ 314 (331)
. +.=.++-++..+-.++..- .--..-...|.+....-++.||.+.+- +..++|.
T Consensus 167 d-~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~------d~l~tF~ 223 (412)
T COG5187 167 D-RKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLS------DILPTFE 223 (412)
T ss_pred c-HHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHH------HHhcccc
No 463
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.25 E-value=1.3e+02 Score=31.92 Aligned_cols=54 Identities=22% Similarity=0.176 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020094 242 GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEE 297 (331)
Q Consensus 242 ~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~ 297 (331)
..++ .++.-.+. .|+|-=+.+.+.+++-.+|.|..+..-.|.+|.++|-..|..
T Consensus 453 drVl-~la~ea~~-kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE~A 506 (655)
T COG2015 453 DRVL-ELAREAFD-KGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAESA 506 (655)
T ss_pred HHHH-HHHHHHHh-cccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhccc
Confidence 3444 56666777 899999999999999999999999999999999999876654
No 464
>KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription]
Probab=34.87 E-value=27 Score=33.29 Aligned_cols=19 Identities=26% Similarity=0.351 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHcCCchH
Q 020094 277 CYVLASYAKFLWDAGDDEE 295 (331)
Q Consensus 277 ~~vl~~LA~~L~~lG~~eE 295 (331)
+++...|+.++.+-|..++
T Consensus 155 aEfrdaLaelle~~G~~~~ 173 (263)
T KOG3074|consen 155 AEFRDALAELLEDFGEGDE 173 (263)
T ss_pred HHHHHHHHHHHHHhCCccc
Confidence 4566777888888887766
No 465
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=33.56 E-value=84 Score=32.57 Aligned_cols=60 Identities=23% Similarity=0.172 Sum_probs=38.6
Q ss_pred HHHhCCCcHHHHHHHHHHHH--h--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020094 182 YSNNNHGSSSTDAYYEKMIE--A--NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG 242 (331)
Q Consensus 182 ~y~s~gd~ekA~e~yerAL~--~--nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~ 242 (331)
.|...+.|+.|.....+..- . |..-+..++.+|.+ ...+.+|..|.+++.+|+...|++.
T Consensus 218 ~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrI-kaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 218 NYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRI-KAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhH-HHhhcchhHHHHHHHHHHHhCcchh
Confidence 34444556666666555431 1 11224445555666 3448999999999999999999854
No 466
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=31.57 E-value=16 Score=38.50 Aligned_cols=106 Identities=20% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHH
Q 020094 190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAI--LANPSDG-NILSLYADLIWQAHKDASRAESYF 266 (331)
Q Consensus 190 ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erAL--eldP~d~-~al~~yA~ll~~~~Gd~deA~~yf 266 (331)
..|..|+++|-...+.....+...|.-.+...|++..|..++.+.. .++|... ......+.+.+. .++.++|+..+
T Consensus 6 ~aA~~yL~~A~~a~~~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~-~~~~~~Al~~L 84 (536)
T PF04348_consen 6 QAAEQYLQQAQQASGEQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALA-QGDPEQALSLL 84 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHh-cCCHHHHHHHh
Confidence 4556666666666665444444444333344788888888877766 4444322 223234444555 77888888877
Q ss_pred HH--HHHhCC-CCHHHHHHHHHHHHHcCCchHH
Q 020094 267 DQ--AVKSAP-DDCYVLASYAKFLWDAGDDEEE 296 (331)
Q Consensus 267 ek--AL~ldP-~d~~vl~~LA~~L~~lG~~eEa 296 (331)
.. ...+.+ .....+...+.++...++.-++
T Consensus 85 ~~~~~~~l~~~~~~~~~~l~A~a~~~~~~~l~A 117 (536)
T PF04348_consen 85 NAQDLWQLPPEQQARYHQLRAQAYEQQGDPLAA 117 (536)
T ss_dssp ---------------------------------
T ss_pred ccCCcccCCHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 63 122222 2223444456666666655444
No 467
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=31.46 E-value=2.3e+02 Score=22.98 Aligned_cols=43 Identities=19% Similarity=0.093 Sum_probs=26.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020094 248 YADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG 291 (331)
Q Consensus 248 yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG 291 (331)
-+..-+. .||+.+|++.+.++-+..+...-.+.-.+.+-...|
T Consensus 65 ~Gl~al~-~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 65 RGLIALA-EGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHH-CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 3344444 788888888888886665544545554454444443
No 468
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=31.18 E-value=3.1e+02 Score=29.58 Aligned_cols=81 Identities=19% Similarity=0.196 Sum_probs=61.9
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020094 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF 266 (331)
Q Consensus 187 gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yf 266 (331)
....--+..|.+++.. ..+..+++.++.++.+ +.-++--.+++|.++.+=+|...-..++. +|+ ..+...|..+|
T Consensus 80 ~k~~~veh~c~~~l~~-~e~kmal~el~q~y~e--n~n~~l~~lWer~ve~dfnDvv~~ReLa~-~yE-kik~sk~a~~f 154 (711)
T COG1747 80 HKNQIVEHLCTRVLEY-GESKMALLELLQCYKE--NGNEQLYSLWERLVEYDFNDVVIGRELAD-KYE-KIKKSKAAEFF 154 (711)
T ss_pred hHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHh--cCchhhHHHHHHHHHhcchhHHHHHHHHH-HHH-HhchhhHHHHH
Confidence 4556667778888875 4567777888888665 46677778999999999999988877766 455 58888888888
Q ss_pred HHHHHh
Q 020094 267 DQAVKS 272 (331)
Q Consensus 267 ekAL~l 272 (331)
.+|+..
T Consensus 155 ~Ka~yr 160 (711)
T COG1747 155 GKALYR 160 (711)
T ss_pred HHHHHH
Confidence 888765
No 469
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=31.13 E-value=2.4e+02 Score=22.94 Aligned_cols=38 Identities=24% Similarity=0.186 Sum_probs=25.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 020094 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD 258 (331)
Q Consensus 220 ~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd 258 (331)
..||+.+|++.+.++-+..++.+-.+..-+..-.. +||
T Consensus 71 ~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~-~gd 108 (108)
T PF07219_consen 71 AEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQA-QGD 108 (108)
T ss_pred HCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-cCC
Confidence 38999999999999987755555554333333333 443
No 470
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=30.76 E-value=93 Score=34.23 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=25.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhh
Q 020094 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDN 300 (331)
Q Consensus 256 ~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~ 300 (331)
.+++++|....++-=+. -.++++-+|..+....+++||.+.+
T Consensus 786 ~~~W~eAFalAe~hPe~---~~dVy~pyaqwLAE~DrFeEAqkAf 827 (1081)
T KOG1538|consen 786 TQRWDEAFALAEKHPEF---KDDVYMPYAQWLAENDRFEEAQKAF 827 (1081)
T ss_pred cccchHhHhhhhhCccc---cccccchHHHHhhhhhhHHHHHHHH
Confidence 56667776655443222 2356667777777777777776544
No 471
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=30.59 E-value=4.3e+02 Score=24.60 Aligned_cols=63 Identities=21% Similarity=0.159 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094 190 SSTDAYYEKMIEANPGNAL-------LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 190 ekA~e~yerAL~~nP~n~~-------~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~ 253 (331)
+.|+-.++..-+-.+..-. .+---|.+.+...|.+++|++.+++.+. +|+...-...++.++.
T Consensus 86 ESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~ 155 (200)
T cd00280 86 ESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHH
Confidence 5666666655444332100 1111233334446677777777777776 6666555444444433
No 472
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=30.33 E-value=4.7e+02 Score=26.60 Aligned_cols=122 Identities=12% Similarity=0.057 Sum_probs=71.0
Q ss_pred cchHHHHHhCCCcHHHHHHHHHHHHhCCC---CHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHH
Q 020094 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPG---NALLL---GNYARFLKEVRGDFAKAEELCGRAILANPS--DGNILSLY 248 (331)
Q Consensus 177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~---n~~~l---~nLA~~L~~~~gd~ekAee~~erALeldP~--d~~al~~y 248 (331)
-|.|.+|..+++.+.|++.|.+..+..-. --++. ..+|.++.. ..-..+.++-....++..-+ --.-+..|
T Consensus 108 ~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D-~~lV~~~iekak~liE~GgDWeRrNRlKvY 186 (393)
T KOG0687|consen 108 LRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLD-HDLVTESIEKAKSLIEEGGDWERRNRLKVY 186 (393)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHhCCChhhhhhHHHH
Confidence 47889999999999999999887775432 22222 233333211 11123444444444544333 22233345
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCchHHHHh
Q 020094 249 ADLIWQAHKDASRAESYFDQAVKS------APDDCYVLASYAKFLWDAGDDEEEEQD 299 (331)
Q Consensus 249 A~ll~~~~Gd~deA~~yfekAL~l------dP~d~~vl~~LA~~L~~lG~~eEa~~~ 299 (331)
-+++.+...+|.+|-.+|-.++.- -|....+.+..-.-+..+.+.+-..+.
T Consensus 187 ~Gly~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Ytv~~g~i~leR~dlktKV 243 (393)
T KOG0687|consen 187 QGLYCMSVRNFKEAADLFLDSVSTFTSYELMSYETFVRYTVITGLIALERVDLKTKV 243 (393)
T ss_pred HHHHHHHHHhHHHHHHHHHHHcccccceecccHHHHHHHHHHHhhheeccchHHhhh
Confidence 566665588999999999887754 333344555555556666666555443
No 473
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=29.41 E-value=2.7e+02 Score=28.29 Aligned_cols=79 Identities=18% Similarity=0.250 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH--HHHHHhCCCCHHHHHHHHHHH--HHHcCCHHHHHHHH
Q 020094 191 STDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELC--GRAILANPSDGNILSLYADLI--WQAHKDASRAESYF 266 (331)
Q Consensus 191 kA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~--erALeldP~d~~al~~yA~ll--~~~~Gd~deA~~yf 266 (331)
.-++++++-...-|+..+.++.||.+.++ .|+|..|-.|+ -|++-.+|+--..-..+|.+. .. ..+++-|.+-+
T Consensus 113 ~~l~~L~e~ynf~~e~i~~lykyakfqye-CGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL-~qnWd~A~edL 190 (432)
T KOG2758|consen 113 QNLQHLQEHYNFTPERIETLYKYAKFQYE-CGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEIL-TQNWDGALEDL 190 (432)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence 34455555555678888999999999998 99998887765 455544443212111233222 22 56788887766
Q ss_pred HHHHH
Q 020094 267 DQAVK 271 (331)
Q Consensus 267 ekAL~ 271 (331)
.|.-+
T Consensus 191 ~rLre 195 (432)
T KOG2758|consen 191 TRLRE 195 (432)
T ss_pred HHHHH
Confidence 55443
No 474
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=28.58 E-value=3.1e+02 Score=26.87 Aligned_cols=46 Identities=20% Similarity=0.006 Sum_probs=39.5
Q ss_pred CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020094 188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRA 234 (331)
Q Consensus 188 d~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erA 234 (331)
..-+|+.+++.++..+|.|..+...+..++.. .|-...|...|...
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~-LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSL-LGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHhc
Confidence 45788999999999999999999988888655 89999998888654
No 475
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=28.01 E-value=4.9e+02 Score=24.11 Aligned_cols=113 Identities=12% Similarity=-0.044 Sum_probs=67.6
Q ss_pred cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------
Q 020094 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS---------------- 240 (331)
Q Consensus 177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~---------------- 240 (331)
.++=......++++.|-.+|--+|+..+=|...+..+|.-+....+.-....++++.....-|.
T Consensus 45 ~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~~~~pv 124 (199)
T PF04090_consen 45 TDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNRRIIAPV 124 (199)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhhhccccc
Confidence 3333445566999999999999999888787777778744333244433333666655543322
Q ss_pred C--------HHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHc
Q 020094 241 D--------GNILSLYADLIWQAHKD--------ASRAESYFDQAVKSAP--DDCYVLASYAKFLWDA 290 (331)
Q Consensus 241 d--------~~al~~yA~ll~~~~Gd--------~deA~~yfekAL~ldP--~d~~vl~~LA~~L~~l 290 (331)
. |.+.....+.+.- +.+ +++..+-++..+-.=| +++++|+-+|.|+.-.
T Consensus 125 frsGs~t~tp~y~~~~LW~~l~-~~~~~~~~~~~~~~l~~ri~Elvl~PPy~d~~el~~i~~m~~L~~ 191 (199)
T PF04090_consen 125 FRSGSRTHTPLYAITWLWILLI-QEEDRESELDSYQQLIERIDELVLSPPYMDDGELWFIRGMCHLWI 191 (199)
T ss_pred ccCCCcccchHHHHHHHHHHHH-hhhhhhhhHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHH
Confidence 1 2111122233333 333 5555555555555555 8889999999887644
No 476
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=27.57 E-value=1.5e+02 Score=17.86 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=12.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 020094 248 YADLIWQAHKDASRAESYFDQAVK 271 (331)
Q Consensus 248 yA~ll~~~~Gd~deA~~yfekAL~ 271 (331)
+...+.. .|++++|..+|+...+
T Consensus 7 ll~a~~~-~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 7 LLRACAK-AGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHH-CCCHHHHHHHHHHHHH
Confidence 3334444 6666666666665544
No 477
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=26.24 E-value=6.5e+02 Score=24.96 Aligned_cols=121 Identities=9% Similarity=0.013 Sum_probs=76.8
Q ss_pred cccchHHHHHhCCCcHHHHHHHHHHHHhCCCC----------HHHHH---HHH-HHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020094 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN----------ALLLG---NYA-RFLKEVRGDFAKAEELCGRAILANPS 240 (331)
Q Consensus 175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n----------~~~l~---nLA-~~L~~~~gd~ekAee~~erALeldP~ 240 (331)
+.-..|+.+.-..||..|++.|++.++.=-.+ .++-. -+| +++.+ .++..++..+..+=-+.--+
T Consensus 37 lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAE-mnrWreVLsWvlqyYq~pEk 115 (309)
T PF07163_consen 37 LLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAE-MNRWREVLSWVLQYYQVPEK 115 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHH-HhhHHHHHHHHHHHhcCccc
Confidence 45556888888899999999999998853111 12222 222 45555 77777766665554432112
Q ss_pred -CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCchHHHH
Q 020094 241 -DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCY-------VLASYAKFLWDAGDDEEEEQ 298 (331)
Q Consensus 241 -d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~-------vl~~LA~~L~~lG~~eEa~~ 298 (331)
-+.++ .+..++|-+.++...+.+.-..=+ .+|.|.. +-.++-+++.=+|.++||++
T Consensus 116 lPpkIl-eLCILLysKv~Ep~amlev~~~WL-~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAee 179 (309)
T PF07163_consen 116 LPPKIL-ELCILLYSKVQEPAAMLEVASAWL-QDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEE 179 (309)
T ss_pred CCHHHH-HHHHHHHHHhcCHHHHHHHHHHHH-hCcccCCchhhHHHHHHHHHHHHhccccHHHHHH
Confidence 25666 677777777999888887665444 4564432 33455566667888888874
No 478
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=26.23 E-value=1.5e+02 Score=29.37 Aligned_cols=91 Identities=23% Similarity=0.266 Sum_probs=60.7
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH---------HHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHH
Q 020094 185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFL---------KEVRGDFAKAEELCGRAILANPS------DGNILSLYA 249 (331)
Q Consensus 185 s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L---------~~~~gd~ekAee~~erALeldP~------d~~al~~yA 249 (331)
...+-=.|+..|...+...|.|.-++.--+-++ +...-....|.+++.+|+...-. -..+.+.|.
T Consensus 7 D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~ 86 (368)
T COG5091 7 DEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLVNFRYF 86 (368)
T ss_pred cccchHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceeeeehhhhH
Confidence 344556677888888888887743322222111 11123467899999999876543 235555677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 020094 250 DLIWQAHKDASRAESYFDQAVKSAPDD 276 (331)
Q Consensus 250 ~ll~~~~Gd~deA~~yfekAL~ldP~d 276 (331)
..+|. ..+|+-|..||.+|+.+--++
T Consensus 87 v~~~~-ik~Ye~a~~~F~~A~~~~~~d 112 (368)
T COG5091 87 VHFFN-IKDYELAQSYFKKAKNLYVDD 112 (368)
T ss_pred HHhhh-HHHHHHHHHHHHHHHHHhhcc
Confidence 77787 999999999999999985533
No 479
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=25.22 E-value=2.6e+02 Score=24.53 Aligned_cols=26 Identities=4% Similarity=-0.029 Sum_probs=20.5
Q ss_pred cchHHHHHhCCCcHHHHHHHHHHHHh
Q 020094 177 GSNNNYSNNNHGSSSTDAYYEKMIEA 202 (331)
Q Consensus 177 ~N~A~~y~s~gd~ekA~e~yerAL~~ 202 (331)
.++|+-..+.++.-.++-+|++|+.+
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~ 30 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSL 30 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 45677777888888888888888775
No 480
>PRK12798 chemotaxis protein; Reviewed
Probab=24.62 E-value=8e+02 Score=25.44 Aligned_cols=107 Identities=14% Similarity=0.024 Sum_probs=64.3
Q ss_pred HhCCCcHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCH
Q 020094 184 NNNHGSSSTDAYYEKMIEA-NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG---NILSLYADLIWQAHKDA 259 (331)
Q Consensus 184 ~s~gd~ekA~e~yerAL~~-nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~---~al~~yA~ll~~~~Gd~ 259 (331)
+-.|+-+++.+.+..+-.. .|..-..+..|.........|..+|+.+|..|-.+.|.-- -++ ....++....|+.
T Consensus 123 Y~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAAL-RRsi~la~~~g~~ 201 (421)
T PRK12798 123 YLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAAL-RRSLFIAAQLGDA 201 (421)
T ss_pred HHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHH-HHhhHHHHhcCcH
Confidence 3446667777666543221 1222233344443333447889999999999999999622 333 3334443338999
Q ss_pred HHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHcC
Q 020094 260 SRAESYFDQAVKSAPDDCYVL---ASYAKFLWDAG 291 (331)
Q Consensus 260 deA~~yfekAL~ldP~d~~vl---~~LA~~L~~lG 291 (331)
+++..|-.+++.....++|.. ..+...+.+..
T Consensus 202 ~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~ 236 (421)
T PRK12798 202 DKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLD 236 (421)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcc
Confidence 999988888888877666543 33344444444
No 481
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.47 E-value=2e+02 Score=28.63 Aligned_cols=111 Identities=11% Similarity=0.138 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020094 188 GSSSTDAYYEKMIEANPGNALL-----------LGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH 256 (331)
Q Consensus 188 d~ekA~e~yerAL~~nP~n~~~-----------l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~ 256 (331)
+-++|+.-|++++++.|.-.+. .+.++.+-.. ...|.+-+.|.+.|+..|-...-+- .....+-- .
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eM-m~~Y~qlLTYIkSAVTrNySEKsIN-~IlDyiSt-S 118 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEM-MERYKQLLTYIKSAVTRNYSEKSIN-SILDYIST-S 118 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHH-HHHHHHHHHHHHHHHhccccHHHHH-HHHHHHhh-h
Q ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHH----HHHHHHHHcCCchHHHHhhh
Q 020094 257 KDASRAESYFDQAVKS--APDDCYVLA----SYAKFLWDAGDDEEEEQDNE 301 (331)
Q Consensus 257 Gd~deA~~yfekAL~l--dP~d~~vl~----~LA~~L~~lG~~eEa~~~~~ 301 (331)
.+.+.-..+|+..++. +..+...|+ .++.+|.+.+++..-.+.++
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlk 169 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILK 169 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHH
No 482
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=23.51 E-value=33 Score=28.48 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=33.0
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 020094 181 NYSNNNHGSSSTDAYYEKMIEANP-GNALLLGNYARFLKEVRGDFAKAEELCG 232 (331)
Q Consensus 181 ~~y~s~gd~ekA~e~yerAL~~nP-~n~~~l~nLA~~L~~~~gd~ekAee~~e 232 (331)
..+...+.......|++.++..++ .++.+...|+.++.. .+++++.+++++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~-~~~~~~l~~~L~ 66 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIK-YDPYEKLLEFLK 66 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHC-TTTCCHHHHTTT
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHh-cCCchHHHHHcc
Confidence 344455667788888888887654 457777777777554 555566666666
No 483
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=23.17 E-value=95 Score=31.84 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=28.4
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHh
Q 020094 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGD------------FAKAEELCGRAILA 237 (331)
Q Consensus 189 ~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd------------~ekAee~~erALel 237 (331)
+.+|+.|+++|.. -++|..|.++|.++-. .|+ |++|+.++.+|-..
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~-LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMID-LGNLYDNESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHH-HHHH-SSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhh-hhcccccchHHHHHHHHHHHHHHHHHhhc
Confidence 4778888888765 5677777777766432 332 56666666666554
No 484
>TIGR01987 HI0074 nucleotidyltransferase substrate binding protein, HI0074 family. The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins. It forms a complex with HI0073, encoded by the adjacent gene and containing a nucleotidyltransferase nucleotide binding domain (pfam01909).
Probab=23.03 E-value=4.6e+02 Score=22.22 Aligned_cols=14 Identities=0% Similarity=-0.415 Sum_probs=6.6
Q ss_pred cHHHHHHHHHHHHh
Q 020094 189 SSSTDAYYEKMIEA 202 (331)
Q Consensus 189 ~ekA~e~yerAL~~ 202 (331)
+.+|...++++...
T Consensus 5 f~kAl~~L~~a~~~ 18 (123)
T TIGR01987 5 FEQALMQLSDANWF 18 (123)
T ss_pred HHHHHHHHHHHHhc
Confidence 44444444444444
No 485
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=22.94 E-value=8e+02 Score=24.98 Aligned_cols=116 Identities=11% Similarity=-0.046 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHcC
Q 020094 190 SSTDAYYEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS------DGNILSLYADLIWQAHK 257 (331)
Q Consensus 190 ekA~e~yerAL~~nP~n------~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~------d~~al~~yA~ll~~~~G 257 (331)
++-++-+.+.++...+| .+++.+.|.+++. .+|.+.|++++++..+..-. -......+|.++.. +.
T Consensus 81 eeki~eld~~iedaeenlGE~ev~ea~~~kaeYycq-igDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D-~~ 158 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQ-IGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLD-HD 158 (393)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhcc-HH
Q ss_pred CHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCchHHHHhhhhhhcccCCCCCC
Q 020094 258 DASRAESYFDQAVKSAP---DDCYVLASYAKFLWDAGDDEEEEQDNEESQHQTDHSHTS 313 (331)
Q Consensus 258 d~deA~~yfekAL~ldP---~d~~vl~~LA~~L~~lG~~eEa~~~~~~~~~~~~~~~~~ 313 (331)
-..+-++-.+..++..- .--..-...|......-++.+|...+= +..++|
T Consensus 159 lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfl------d~vsTF 211 (393)
T KOG0687|consen 159 LVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFL------DSVSTF 211 (393)
T ss_pred HHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHH------HHcccc
No 486
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=22.38 E-value=5.3e+02 Score=33.76 Aligned_cols=100 Identities=12% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------------------------HHH
Q 020094 190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG------------------------NIL 245 (331)
Q Consensus 190 ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~------------------------~al 245 (331)
..++.-|-++.+...-.....+.++.++..-...+++|..-+++-++--=+++ ..+
T Consensus 2736 A~~in~fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff 2815 (3550)
T KOG0889|consen 2736 AWAINRFAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFF 2815 (3550)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHH
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020094 246 SLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290 (331)
Q Consensus 246 ~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~l 290 (331)
...+.++.+ .|++++|-+.|..|++++-.-..+|...|..+.+.
T Consensus 2816 ~lkG~f~~k-L~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~ 2859 (3550)
T KOG0889|consen 2816 TLKGMFLEK-LGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNR 2859 (3550)
T ss_pred HhhhHHHHH-hcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHH
No 487
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=22.33 E-value=1.8e+02 Score=25.56 Aligned_cols=38 Identities=11% Similarity=-0.011 Sum_probs=0.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094 215 RFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 215 ~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll 252 (331)
.+-+...-+.+.|+++|..++++.|++-.++..+...+
T Consensus 83 q~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~l 120 (139)
T PF12583_consen 83 QCSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNL 120 (139)
T ss_dssp HHHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHH
T ss_pred HHHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHcc
No 488
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.28 E-value=7.8e+02 Score=24.45 Aligned_cols=109 Identities=17% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHH
Q 020094 180 NNYSNNNHGSSSTDAYYEKMIEA-----NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-------DGNILSL 247 (331)
Q Consensus 180 A~~y~s~gd~ekA~e~yerAL~~-----nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~-------d~~al~~ 247 (331)
|.++++.++..-|..+.-.+++. ..++..-..+++.++.+....-.+=..+.++||+=.-. +|..+..
T Consensus 53 a~~ffk~~Q~~saaDl~~~~le~~eka~~ad~~~~~anl~~ll~e~~~~eper~~~v~raikWS~~~~~~k~G~p~lH~~ 132 (312)
T KOG3024|consen 53 ALCFFKLKQRGSAADLLVLVLEVLEKAEVADSLLKVANLAELLGEADPSEPERKTFVRRAIKWSKEFGEGKYGHPELHAL 132 (312)
T ss_pred HHHHHHhccCCCchhHHHHHHHHHHHHHhhHhHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHhhcCCCCCCCHHHHHH
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCch
Q 020094 248 YADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDE 294 (331)
Q Consensus 248 yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~e 294 (331)
+|..+|. .+++.+|..+| +--+|.....+.-..+|....++
T Consensus 133 la~~l~~-e~~~~~a~~HF-----ll~~d~s~~a~~ll~y~~~r~f~ 173 (312)
T KOG3024|consen 133 LADKLWT-EDNVEEARRHF-----LLSEDGSKFAYMLLEYSMSRGFK 173 (312)
T ss_pred HHHHHHh-cccHHHHHhHh-----hhcCChHHHHHHHHHHHhhcccc
No 489
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=22.14 E-value=6.5e+02 Score=23.47 Aligned_cols=71 Identities=7% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchH
Q 020094 224 FAKAEELCGRAILANPSD-------GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEE 295 (331)
Q Consensus 224 ~ekAee~~erALeldP~d-------~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eE 295 (331)
++.|+-.++..-+-.|.. -.+..--+.+.+...|.|++|.+.+++.+. +|++..-...|..+..+...+..
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~ 162 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHP 162 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccH
No 490
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.92 E-value=4.9e+02 Score=29.54 Aligned_cols=110 Identities=11% Similarity=0.087 Sum_probs=0.0
Q ss_pred hHHHHHhCCCcHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHH----
Q 020094 179 NNNYSNNNHGSSSTDAYYEKMIE----ANPGNALLLGNYARFLKEVRGDF--AKAEELCGRAILANPSDGNILSLY---- 248 (331)
Q Consensus 179 ~A~~y~s~gd~ekA~e~yerAL~----~nP~n~~~l~nLA~~L~~~~gd~--ekAee~~erALeldP~d~~al~~y---- 248 (331)
+..+|...|++++|++.+.+... .++.....+-..-.++.. .++. +=..+|-.=.+..+|....-.+.-
T Consensus 510 Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~-l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~~~ 588 (877)
T KOG2063|consen 510 LIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKK-LGAENLDLILEYADWVLNKNPEAGIQIFTSEDKQ 588 (877)
T ss_pred HHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHH-hcccchhHHHHHhhhhhccCchhheeeeeccChh
Q ss_pred --------HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Q 020094 249 --------ADLIWQAHKDASRAESYFDQAVKSAP-DDCYVLASYAKFLWD 289 (331)
Q Consensus 249 --------A~ll~~~~Gd~deA~~yfekAL~ldP-~d~~vl~~LA~~L~~ 289 (331)
..+-+......+-++.|++.++...- .+...+..++..|..
T Consensus 589 ~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 589 EAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
No 491
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=21.92 E-value=3.3e+02 Score=31.86 Aligned_cols=133 Identities=14% Similarity=0.074 Sum_probs=0.0
Q ss_pred chHHHHHhCCCcHHHHHHHHHHHH----------hCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 020094 178 SNNNYSNNNHGSSSTDAYYEKMIE----------ANPGNALLL---GNYARFLKEVRGDFAKAEELCGRAILANPSDGNI 244 (331)
Q Consensus 178 N~A~~y~s~gd~ekA~e~yerAL~----------~nP~n~~~l---~nLA~~L~~~~gd~ekAee~~erALeldP~d~~a 244 (331)
+.|-+|...|+.++|+.+|+.+.. ..+.-..+. ..++.-+.+ ++++.+|-++....+. ||.-+.+
T Consensus 957 ~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e-~~kh~eAa~il~e~~s-d~~~av~ 1034 (1265)
T KOG1920|consen 957 EAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVE-QRKHYEAAKILLEYLS-DPEEAVA 1034 (1265)
T ss_pred HHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH-cccchhHHHHHHHHhc-CHHHHHH
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-------HhCC----CCHHHHHHHHHHHHHcCCchHHHHhhhhhhcccCCCCCC
Q 020094 245 LSLYADLIWQAHKDASRAESYFDQAV-------KSAP----DDCYVLASYAKFLWDAGDDEEEEQDNEESQHQTDHSHTS 313 (331)
Q Consensus 245 l~~yA~ll~~~~Gd~deA~~yfekAL-------~ldP----~d~~vl~~LA~~L~~lG~~eEa~~~~~~~~~~~~~~~~~ 313 (331)
+ +.+ ...+++|+....++- .+.| ....+...+..+...-+++.+.-...+ +.....
T Consensus 1035 l------l~k-a~~~~eAlrva~~~~~~d~iee~l~~al~e~~~~~~~~L~~~k~~f~~yk~RLl~vR------e~k~~~ 1101 (1265)
T KOG1920|consen 1035 L------LCK-AKEWEEALRVASKAKRDDIIEEVLKPALLEAFGEVLEFLEDVKEQFVKYKKRLLVVR------ENKEKR 1101 (1265)
T ss_pred H------Hhh-HhHHHHHHHHHHhcccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------Hhhhhc
Q ss_pred CCcccCCCCCCC
Q 020094 314 PPNFFHGASHHS 325 (331)
Q Consensus 314 ~~~~~~~~~~~~ 325 (331)
|..|.-+-..|+
T Consensus 1102 ~~~~~~~ev~~d 1113 (1265)
T KOG1920|consen 1102 PEAFADGEVEHD 1113 (1265)
T ss_pred hhhhhccccCcc
No 492
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=20.96 E-value=2.4e+02 Score=27.95 Aligned_cols=103 Identities=9% Similarity=0.117 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH------HHHcCCHH
Q 020094 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVR--GDFAKAEELCGRAILANPSDGNILSLYADLI------WQAHKDAS 260 (331)
Q Consensus 189 ~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~--gd~ekAee~~erALeldP~d~~al~~yA~ll------~~~~Gd~d 260 (331)
.++-+.++..+++.+|.+--+|.---.++.. . .+++.-..+..+.+..||.|..+|...-+++ .. -.++.
T Consensus 90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~-~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N-~S~~k 167 (328)
T COG5536 90 LDNELDFLDEALKDNPKNYQIWHHRQWMLEL-FPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFN-FSDLK 167 (328)
T ss_pred hhcHHHHHHHHHhcCCchhhhhHHHHHHHHh-CCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhcc-chhHH
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHH---HHHHHHcCCc
Q 020094 261 RAESYFDQAVKSAPDDCYVLASY---AKFLWDAGDD 293 (331)
Q Consensus 261 eA~~yfekAL~ldP~d~~vl~~L---A~~L~~lG~~ 293 (331)
+-.+|-.-+|+.|+.|..+|... .....+.|+.
T Consensus 168 ~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~v 203 (328)
T COG5536 168 HELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDV 203 (328)
T ss_pred HHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhccc
No 493
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=20.83 E-value=3.6e+02 Score=27.50 Aligned_cols=69 Identities=20% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020094 212 NYARFLKEVRGDFAKAEELCGRAILANPSDGN-------ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLAS 282 (331)
Q Consensus 212 nLA~~L~~~~gd~ekAee~~erALeldP~d~~-------al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~ 282 (331)
.++..++. ..||..|.++|+.++...+.... ....-+...|+ .=++++|..++++.+.......+++..
T Consensus 135 ~~~r~l~n-~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD-~fd~~~A~~~L~~~~~~~~~~~~~~~~ 210 (380)
T TIGR02710 135 GYARRAIN-AFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWD-RFEHEEALDYLNDPLPERLALYQVTSH 210 (380)
T ss_pred HHHHHHHH-hcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHH-ccCHHHHHHHHhhccchhhhhhhhhhh
No 494
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=20.51 E-value=9.2e+02 Score=24.59 Aligned_cols=122 Identities=12% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHH-HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------CCHHHHHHHH
Q 020094 192 TDAYYE-KMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP---------------------SDGNILSLYA 249 (331)
Q Consensus 192 A~e~ye-rAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP---------------------~d~~al~~yA 249 (331)
+..|++ +....+|.-+.-|.++..+ ++ .+-..+--..+..-+..-| -|+.-+..++
T Consensus 4 ~~~~L~~~~~~a~~~l~~ew~~leeL-y~-eKLW~QLt~~l~~fvd~~~f~~~~~~l~lY~NFvsefe~kINplslvei~ 81 (380)
T KOG2908|consen 4 APDYLQTQLKSANPSLAAEWDRLEEL-YE-EKLWHQLTLALVDFVDDPPFQAGDLLLQLYLNFVSEFETKINPLSLVEIL 81 (380)
T ss_pred HHHHHHHHHhhcCcchhhHHHHHHHH-HH-HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhccChHHHHHHH
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCchHHHHhhhhhhcccCCCCCCCC
Q 020094 250 DLIWQAHKDASRAESYFDQAVKSAPDDCY------VLASYAKFLWDAGDDEEEEQDNEESQHQTDHSHTSPP 315 (331)
Q Consensus 250 ~ll~~~~Gd~deA~~yfekAL~ldP~d~~------vl~~LA~~L~~lG~~eEa~~~~~~~~~~~~~~~~~~~ 315 (331)
....+...|.++|++++++.++.-....+ .....+.++...++..+..+.+.+..+-.+..-..|+
T Consensus 82 l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~ 153 (380)
T KOG2908|consen 82 LVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTS 153 (380)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCCh
No 495
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=20.26 E-value=1.8e+02 Score=32.43 Aligned_cols=92 Identities=17% Similarity=0.140 Sum_probs=0.0
Q ss_pred CCCCCCCCCCcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020094 163 GGDAGGGGGGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG 242 (331)
Q Consensus 163 ~g~~~~~~g~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~ 242 (331)
||++.-|.|----.-|++..+..+..++.|.+||.+. ....+++.+++. ..+|+.-+.+.++. |+|.
T Consensus 786 g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~--------~~~e~~~ecly~-le~f~~LE~la~~L----pe~s 852 (1189)
T KOG2041|consen 786 GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC--------GDTENQIECLYR-LELFGELEVLARTL----PEDS 852 (1189)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------cchHhHHHHHHH-HHhhhhHHHHHHhc----Cccc
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020094 243 NILSLYADLIWQAHKDASRAESYFDQ 268 (331)
Q Consensus 243 ~al~~yA~ll~~~~Gd~deA~~yfek 268 (331)
..+-.+|..+-. .|--++|++.|-|
T Consensus 853 ~llp~~a~mf~s-vGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 853 ELLPVMADMFTS-VGMCDQAVEAYLR 877 (1189)
T ss_pred chHHHHHHHHHh-hchHHHHHHHHHh
No 496
>PF13934 ELYS: Nuclear pore complex assembly
Probab=20.03 E-value=6.2e+02 Score=23.43 Aligned_cols=80 Identities=15% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 020094 180 NNYSNNNHGSSSTDAYYEKMIEANPGN-ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD 258 (331)
Q Consensus 180 A~~y~s~gd~ekA~e~yerAL~~nP~n-~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd 258 (331)
|-|+-..++++.|++++ .+|.- +.+......++.. .++..-|..+++- +.-......+...+..+ .. .+.
T Consensus 85 g~W~LD~~~~~~A~~~L-----~~ps~~~~~~~~Il~~L~~-~~~~~lAL~y~~~-~~p~l~s~~~~~~~~~~-La-~~~ 155 (226)
T PF13934_consen 85 GFWLLDHGDFEEALELL-----SHPSLIPWFPDKILQALLR-RGDPKLALRYLRA-VGPPLSSPEALTLYFVA-LA-NGL 155 (226)
T ss_pred HHHHhChHhHHHHHHHh-----CCCCCCcccHHHHHHHHHH-CCChhHHHHHHHh-cCCCCCCHHHHHHHHHH-HH-cCC
Q ss_pred HHHHHHHHHH
Q 020094 259 ASRAESYFDQ 268 (331)
Q Consensus 259 ~deA~~yfek 268 (331)
..||..+.++
T Consensus 156 v~EAf~~~R~ 165 (226)
T PF13934_consen 156 VTEAFSFQRS 165 (226)
T ss_pred HHHHHHHHHh
Done!