BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020096
(331 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3TZ87|MARH9_MOUSE E3 ubiquitin-protein ligase MARCH9 OS=Mus musculus GN=March9 PE=2
SV=1
Length = 348
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 202 CRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLPVT 258
CRIC E+G L C C G++R H+ C IRW S +G+ +CE+C + Q L ++
Sbjct: 110 CRICFQGPEQGELLS-PCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAIS 165
>sp|Q86YJ5|MARH9_HUMAN E3 ubiquitin-protein ligase MARCH9 OS=Homo sapiens GN=MARCH9 PE=1
SV=2
Length = 346
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 202 CRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLPVT 258
CRIC E+G L C C G++R H+ C IRW S +G+ +CE+C + Q L ++
Sbjct: 110 CRICFQGPEQGELLS-PCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAIS 165
>sp|Q0P496|MARH4_DANRE E3 ubiquitin-protein ligase MARCH4 OS=Danio rerio GN=march4 PE=2
SV=1
Length = 421
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 201 VCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLPVT 258
+CRIC E+G L C C G++R HE C I+W S +G+ +CE+C + Q + ++
Sbjct: 142 LCRICFQGPEQGELLS-PCRCSGSVRCTHEPCLIKWISERGSWSCELCYYKYQVIAIS 198
>sp|A6P320|MARHB_RAT E3 ubiquitin-protein ligase MARCH11 OS=Rattus norvegicus GN=March11
PE=1 SV=1
Length = 398
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLP 256
+ +C+IC E+G L C C G++R H+ C ++W S +G+ CE+C
Sbjct: 161 HHQPICKICFQGAEQGELLN-PCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYH--- 216
Query: 257 VTLLRMSSSAQ 267
VT ++M Q
Sbjct: 217 VTAIKMKQPCQ 227
>sp|Q8CBH7|MARHB_MOUSE E3 ubiquitin-protein ligase MARCH11 OS=Mus musculus GN=March11 PE=2
SV=2
Length = 400
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLP 256
+ +C+IC E+G L C C G++R H+ C ++W S +G+ CE+C
Sbjct: 163 HHQPICKICFQGAEQGELLN-PCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYH--- 218
Query: 257 VTLLRMSSSAQ 267
VT ++M Q
Sbjct: 219 VTAIKMKQPCQ 229
>sp|A6NNE9|MARHB_HUMAN E3 ubiquitin-protein ligase MARCH11 OS=Homo sapiens GN=MARCH11 PE=2
SV=3
Length = 402
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLP 256
+ +C+IC E+G L C C G++R H+ C ++W S +G+ CE+C +
Sbjct: 165 HHQPICKICFQGAEQGELLN-PCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYHVIA 223
Query: 257 VTL 259
+ +
Sbjct: 224 IKM 226
>sp|Q9P2E8|MARH4_HUMAN E3 ubiquitin-protein ligase MARCH4 OS=Homo sapiens GN=MARCH4 PE=2
SV=2
Length = 410
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 201 VCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLPVT 258
+CRIC E+G L C C G+++ H+ C I+W S +G +CE+C + + ++
Sbjct: 162 LCRICFQGPEQGELLS-PCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAIS 218
>sp|P40318|DOA10_YEAST ERAD-associated E3 ubiquitin-protein ligase DOA10 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SSM4 PE=1
SV=1
Length = 1319
Score = 47.8 bits (112), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 191 NDEEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK--------GN 242
ND+ A A CRIC E N L C C+G+++ +HE C + W ++K +
Sbjct: 30 NDD--APSGATCRICRGEATEDNPLFHPCKCRGSIKYMHESCLLEWVASKNIDISKPGAD 87
Query: 243 KNCEVCGKEVQ 253
C++C +Q
Sbjct: 88 VKCDICHYPIQ 98
>sp|P27426|VIE1_BHV4D Probable E3 ubiquitin-protein ligase IE1 OS=Bovine herpesvirus 4
(strain DN-599) GN=IE1 PE=3 SV=1
Length = 285
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 10/134 (7%)
Query: 191 NDEEIAEEEAVCRICLDICEEGNTL--KMECSCKGALRLVHEECAIRWFSTKGNKNCEVC 248
N I EE C IC D G +L C+C G L+ HEEC W S G K C+ C
Sbjct: 121 NQSSIDEEGKQCWICRD----GESLPEARYCNCYGDLQYCHEECLKTWISMSGEKKCKFC 176
Query: 249 GKEVQ-NLPVTLLR-MSSSAQRDNRRNHSQQTMHSRSVSAWQDFVVLVLISTIC--YFFF 304
+ N ++L R + RD+R + ++ A L+ +C YF +
Sbjct: 177 QTPYKVNRQLSLKRGLPGYWDRDDRFVFIAGFIGMGTILAGWIASFFYLLVVLCGKYFTY 236
Query: 305 LEQILIEVGLSRIR 318
+ +++ GL+ I+
Sbjct: 237 KDVMIVVGGLAIIQ 250
>sp|Q80TE3|MARH4_MOUSE E3 ubiquitin-protein ligase MARCH4 OS=Mus musculus GN=March4 PE=2
SV=3
Length = 409
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 201 VCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLPVT 258
+CRIC E+G L C C G+++ H+ C I+W S +G +CE+C + + ++
Sbjct: 161 LCRICFQGPEQGELLS-PCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAIS 217
>sp|O60103|DOA10_SCHPO ERAD-associated E3 ubiquitin-protein ligase doa10
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=doa10 PE=1 SV=1
Length = 1242
Score = 46.6 bits (109), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 190 NNDEEIAEEEAVCRICLDICEEG--NTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEV 247
N D+EI CR+C CE + L C C G++R VH+EC + W +CE+
Sbjct: 2 NADDEI------CRVCR--CEGAPDSPLFHPCKCTGSIRYVHQECLVEWLGHSKKTHCEL 53
Query: 248 C 248
C
Sbjct: 54 C 54
>sp|Q6ZQ89|MARH6_MOUSE E3 ubiquitin-protein ligase MARCH6 OS=Mus musculus GN=March6 PE=2
SV=2
Length = 909
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLPV 257
EE +CR+C L C C G+++ +H+EC ++W + CE+C P+
Sbjct: 5 EEDICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAFTPI 64
>sp|Q5XI50|MARH7_RAT E3 ubiquitin-protein ligase MARCH7 OS=Rattus norvegicus GN=March7
PE=2 SV=1
Length = 692
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 15/105 (14%)
Query: 201 VCRIC-LDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKN--------CEVCGKE 251
+CRIC + N L C C G+L+ VH+EC +W K N CE+C ++
Sbjct: 552 LCRICQMAAASSSNLLIEPCKCTGSLQYVHQECMKKWLQAKINSGSSLEAVTTCELCKEK 611
Query: 252 VQNLPVTLLRMSSSAQRDNRRNHSQQTMHSRSVSAWQDFVVLVLI 296
+Q L + + R H+ + +S+ VVL+ +
Sbjct: 612 LQ------LNLEDFDIHELHRAHANEQAEYEFISSGLYLVVLLHL 650
>sp|O60337|MARH6_HUMAN E3 ubiquitin-protein ligase MARCH6 OS=Homo sapiens GN=MARCH6 PE=1
SV=2
Length = 910
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLPV 257
EE +CR+C L C C G+++ +H+EC ++W + CE+C P+
Sbjct: 5 EEDICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAFTPI 64
>sp|Q5R9W1|MARH6_PONAB E3 ubiquitin-protein ligase MARCH6 OS=Pongo abelii GN=MARCH6 PE=2
SV=1
Length = 910
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLPV 257
EE +CR+C L C C G+++ +H+EC ++W + CE+C P+
Sbjct: 5 EEDICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAFTPI 64
>sp|Q9WV66|MARH7_MOUSE E3 ubiquitin-protein ligase MARCH7 OS=Mus musculus GN=March7 PE=2
SV=1
Length = 693
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 15/104 (14%)
Query: 202 CRIC-LDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKN--------CEVCGKEV 252
CRIC + N L C C G+L+ VH+EC +W K N CE+C +++
Sbjct: 554 CRICQMAAASSSNLLIEPCKCTGSLQYVHQECMKKWLQAKINSGSSLEAVTTCELCKEKL 613
Query: 253 QNLPVTLLRMSSSAQRDNRRNHSQQTMHSRSVSAWQDFVVLVLI 296
Q L + + R H+ + +S+ VVL+ +
Sbjct: 614 Q------LNLEDFDIHELHRAHANEQAEYEFISSGLYLVVLLHL 651
>sp|Q6NZQ8|MARH1_MOUSE E3 ubiquitin-protein ligase MARCH1 OS=Mus musculus GN=March1 PE=1
SV=2
Length = 289
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 201 VCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKE-VQNLPVTL 259
+CRIC +E + L C C G LR VH+ C +W + + CE+C + + +
Sbjct: 79 ICRICHCEGDEESPLITPCRCTGTLRFVHQSCLHQWIKSSDTRCCELCKYDFIMETKLKP 138
Query: 260 LRMSSSAQR---DNRRNHSQQTMHSRSVS--AWQDFVVL 293
LR Q + R+ T H +V+ W +V++
Sbjct: 139 LRKWEKLQMTTSERRKIFCSVTFHVIAVTCVVWSLYVLI 177
>sp|Q8TCQ1|MARH1_HUMAN E3 ubiquitin-protein ligase MARCH1 OS=Homo sapiens GN=MARCH1 PE=1
SV=1
Length = 289
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 201 VCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKE-VQNLPVTL 259
+CRIC +E + L C C G LR VH+ C +W + + CE+C + + +
Sbjct: 79 ICRICHCEGDEESPLITPCRCTGTLRFVHQSCLHQWIKSSDTRCCELCKYDFIMETKLKP 138
Query: 260 LRMSSSAQR---DNRRNHSQQTMHSRSVS--AWQDFVVL 293
LR Q + R+ T H +++ W +V++
Sbjct: 139 LRKWEKLQMTTSERRKIFCSVTFHVIAITCVVWSLYVLI 177
>sp|Q5R9W2|MARH7_PONAB E3 ubiquitin-protein ligase MARCH7 OS=Pongo abelii GN=MARCH7 PE=2
SV=1
Length = 707
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 202 CRICLDICEEGNTLKME-CSCKGALRLVHEECAIRWFSTKGNK--------NCEVCGKEV 252
CRIC + L +E C C G+L+ VH++C +W K N CE+C +++
Sbjct: 552 CRICQMAAASSSNLLIEPCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCELCKEKL 611
Query: 253 Q 253
+
Sbjct: 612 E 612
>sp|Q9H992|MARH7_HUMAN E3 ubiquitin-protein ligase MARCH7 OS=Homo sapiens GN=MARCH7 PE=1
SV=1
Length = 704
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 202 CRICLDICEEGNTLKME-CSCKGALRLVHEECAIRWFSTKGNK--------NCEVCGKEV 252
CRIC + L +E C C G+L+ VH++C +W K N CE+C +++
Sbjct: 552 CRICQMAAASSSNLLIEPCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCELCKEKL 611
Query: 253 Q 253
+
Sbjct: 612 E 612
>sp|P90489|MIR2_HHV8P E3 ubiquitin-protein ligase MIR2 OS=Human herpesvirus 8 type P
(isolate GK18) GN=K5 PE=1 SV=1
Length = 256
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 188 MENNDEEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEV 247
M + D E E +C IC + E GN C+C G L +VH +C W + N C++
Sbjct: 1 MASKDVEEGVEGPICWICRE--EVGNEGIHPCACTGELDVVHPQCLSTWLTVSRNTACQM 58
Query: 248 C 248
C
Sbjct: 59 C 59
>sp|Q68FA7|MARH3_XENTR E3 ubiquitin-protein ligase MARCH3 OS=Xenopus tropicalis GN=march3
PE=2 SV=1
Length = 251
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 174 VQTDTSDDQIVPAPMENNDEEIAEEEAVCRICLDICEEGNT---LKMECSCKGALRLVHE 230
+Q D Q++ + + + +CRIC EG+T L C C G L +H
Sbjct: 41 MQVSAKDGQLLSTVVRTLTTQSFNDRPMCRIC----HEGSTQEDLLSPCECTGTLGTIHR 96
Query: 231 ECAIRWFSTKGNKNCEVC 248
C W S+ CE+C
Sbjct: 97 SCLEHWLSSSNTSYCELC 114
>sp|P32225|LAP_SWPVK E3 ubiquitin-protein ligase LAP OS=Swinepox virus (strain Kasza)
GN=LAP PE=3 SV=1
Length = 155
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 201 VCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLPV 257
VC IC D + + K C+CK ++VH+EC +W ++C++C KE + V
Sbjct: 4 VCWICKD---DYSIEKNYCNCKNEYKVVHDECMKKWIQYSRERSCKLCNKEYNIISV 57
>sp|Q9DBD2|MARH8_MOUSE E3 ubiquitin-protein ligase MARCH8 OS=Mus musculus GN=March8 PE=2
SV=1
Length = 286
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 201 VCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKE-VQNLPVTL 259
+CRIC ++ + L C C G+L VH+ C +W + + CE+C E + +
Sbjct: 75 ICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLKP 134
Query: 260 LRMSSSAQR---DNRRNHSQQTMHSRSVS--AWQDFVVL 293
LR Q + R+ T H +++ W +V++
Sbjct: 135 LRKWEKLQMTASERRKIMCSVTFHVIAITCVVWSLYVLI 173
>sp|Q32L65|MARH2_BOVIN E3 ubiquitin-protein ligase MARCH2 OS=Bos taurus GN=MARCH2 PE=2
SV=1
Length = 245
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 201 VCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEV 252
CRIC + G +L C C G L VH+ C RW S+ CE+C E
Sbjct: 63 FCRICHEG-ANGESLLSPCGCSGTLGAVHKSCLERWLSSSNTSYCELCHTEF 113
>sp|Q0VD59|MARH8_BOVIN E3 ubiquitin-protein ligase MARCH8 OS=Bos taurus GN=MARCH8 PE=2
SV=1
Length = 289
Score = 40.0 bits (92), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 201 VCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKE-VQNLPVTL 259
+CRIC ++ + L C C G+L VH+ C +W + + CE+C E + +
Sbjct: 77 ICRICHCEGDDESPLITPCRCTGSLHFVHQTCLQQWIKSSDTRCCELCKYEFIMETKLKP 136
Query: 260 LRMSSSAQR---DNRRNHSQQTMHSRSVS--AWQDFVVL 293
LR Q + R+ T H +++ W +V++
Sbjct: 137 LRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLI 175
>sp|Q5T0T0|MARH8_HUMAN E3 ubiquitin-protein ligase MARCH8 OS=Homo sapiens GN=MARCH8 PE=1
SV=1
Length = 291
Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 201 VCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEV 252
+CRIC ++ + L C C G+L VH+ C +W + + CE+C E
Sbjct: 79 ICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 130
>sp|P90495|MIR1_HHV8P E3 ubiquitin-protein ligase MIR1 OS=Human herpesvirus 8 type P
(isolate GK18) GN=K3 PE=1 SV=1
Length = 333
Score = 40.0 bits (92), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCG 249
E+ VC IC + E GN C C G L VH C W + N C++CG
Sbjct: 4 EDVPVCWICNE--ELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICG 54
>sp|Q1LVZ2|MARH2_DANRE E3 ubiquitin-protein ligase MARCH2 OS=Danio rerio GN=march2 PE=2
SV=1
Length = 249
Score = 40.0 bits (92), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 201 VCRICL---DICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEV 252
+CRIC D+C L C C G L VH+ C +W S+ CE+C E
Sbjct: 63 ICRICHEGQDVCNSEGLLS-PCDCTGTLGTVHKSCLEKWLSSSNTSYCELCHTEF 116
>sp|Q5XIV2|MARHA_RAT Probable E3 ubiquitin-protein ligase MARCH10 OS=Rattus norvegicus
GN=March10 PE=2 SV=1
Length = 790
Score = 39.7 bits (91), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 202 CRIC-LDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGN--------KNCEVC 248
CRIC + N L C C G+L+ VH+EC +W K K CE+C
Sbjct: 641 CRICQIAGGSPANPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLSTVKTCEMC 696
>sp|Q28IK8|MARH8_XENTR E3 ubiquitin-protein ligase MARCH8 OS=Xenopus tropicalis GN=march8
PE=2 SV=1
Length = 264
Score = 39.3 bits (90), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 201 VCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKE-VQNLPVTL 259
+CRIC ++ + L C C G+L VH+ C +W + + CE+C E + +
Sbjct: 52 ICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKFEFIMETKLKP 111
Query: 260 LRMSSSAQR---DNRRNHSQQTMHSRSVS--AWQDFVVL 293
LR Q + R+ T H +++ W +V++
Sbjct: 112 LRKWEKLQMTASERRKIMCSVTFHVIAITCVVWSLYVLI 150
>sp|Q5XH39|MARH8_XENLA E3 ubiquitin-protein ligase MARCH8 OS=Xenopus laevis GN=march8 PE=2
SV=2
Length = 264
Score = 39.3 bits (90), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 201 VCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKE-VQNLPVTL 259
+CRIC ++ + L C C G+L VH+ C +W + + CE+C E + +
Sbjct: 52 ICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKFEFIMETKLKP 111
Query: 260 LRMSSSAQR---DNRRNHSQQTMHSRSVS--AWQDFVVL 293
LR Q + R+ T H +++ W +V++
Sbjct: 112 LRKWEKLQMTASERRKIMCSVTFHVIAITCVVWSLYVLI 150
>sp|Q5PQ35|MARH2_XENLA E3 ubiquitin-protein ligase MARCH2 OS=Xenopus laevis GN=march2 PE=2
SV=1
Length = 246
Score = 39.3 bits (90), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 201 VCRICLDICEEGNTLKM--ECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEV 252
+CRIC E GN ++ C C G L VH+ C +W S+ CE+C E
Sbjct: 63 ICRICH---EGGNGERLLSPCDCTGTLGTVHKTCLEKWLSSSNTSYCELCHTEF 113
>sp|Q8NA82|MARHA_HUMAN Probable E3 ubiquitin-protein ligase MARCH10 OS=Homo sapiens
GN=MARCH10 PE=2 SV=3
Length = 808
Score = 39.3 bits (90), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 202 CRIC-LDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK--------GNKNCEVC 248
CRIC + N L C C G+L+ VH+EC +W K K CE+C
Sbjct: 659 CRICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKTCEMC 714
>sp|Q28EX7|MARH2_XENTR E3 ubiquitin-protein ligase MARCH2 OS=Xenopus tropicalis GN=march2
PE=2 SV=1
Length = 246
Score = 39.3 bits (90), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 201 VCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEV 252
+CRIC + G L C C G L VH+ C +W S+ CE+C E
Sbjct: 63 ICRICHEG-GNGERLLSPCDCTGTLGTVHKTCLEKWLSSSNTSYCELCHTEF 113
>sp|Q9P0N8|MARH2_HUMAN E3 ubiquitin-protein ligase MARCH2 OS=Homo sapiens GN=MARCH2 PE=1
SV=1
Length = 246
Score = 38.9 bits (89), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 201 VCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEV 252
CRIC + G L C C G L VH+ C +W S+ CE+C E
Sbjct: 63 FCRICHEG-ANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113
>sp|Q4R6Y5|ZNRF4_MACFA Zinc/RING finger protein 4 OS=Macaca fascicularis GN=ZNRF4 PE=2
SV=1
Length = 429
Score = 38.9 bits (89), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 201 VCRICLDICEEGNTLK-MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEV 252
+C ICLD EEG+ LK + CS H +C WFS ++C VC + V
Sbjct: 308 LCAICLDEYEEGDQLKILPCS-----HTYHCKCIDPWFSQAPRRSCPVCKQSV 355
>sp|Q5I0I2|MARH2_RAT E3 ubiquitin-protein ligase MARCH2 OS=Rattus norvegicus GN=March2
PE=1 SV=1
Length = 246
Score = 38.9 bits (89), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 201 VCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEV 252
CRIC + G L C C G L VH+ C +W S+ CE+C E
Sbjct: 63 FCRICHEG-ANGENLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113
>sp|Q99M02|MARH2_MOUSE E3 ubiquitin-protein ligase MARCH2 OS=Mus musculus GN=March2 PE=2
SV=1
Length = 246
Score = 38.9 bits (89), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 201 VCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEV 252
CRIC + G L C C G L VH+ C +W S+ CE+C E
Sbjct: 63 FCRICHEG-ANGENLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113
>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2
SV=1
Length = 347
Score = 38.5 bits (88), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 188 MENNDEEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEV 247
+ +D + +E VC ICLD E+G+ L++ C A H C W T+ K C +
Sbjct: 216 IPTHDYQKGDEYDVCAICLDEYEDGDKLRV-LPCAHA---YHSRCVDPWL-TQTRKTCPI 270
Query: 248 CGKEVQNLP 256
C + V P
Sbjct: 271 CKQPVHRGP 279
>sp|Q0IH10|MARH3_XENLA E3 ubiquitin-protein ligase MARCH3 OS=Xenopus laevis GN=march3 PE=2
SV=1
Length = 252
Score = 38.5 bits (88), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 174 VQTDTSDDQIVPAPMEN-NDEEIAEEEAVCRICLDICEEGNT---LKMECSCKGALRLVH 229
+Q D Q++ + + + +CRIC EG+T L C C G L +H
Sbjct: 41 MQVSAKDGQLLSTVVRTLTTQSSFNDHPMCRIC----HEGSTQEDLLSPCECTGTLGTIH 96
Query: 230 EECAIRWFSTKGNKNCEVC 248
C W S+ CE+C
Sbjct: 97 RSCLEHWLSSSNTSYCELC 115
>sp|Q8WWF5|ZNRF4_HUMAN Zinc/RING finger protein 4 OS=Homo sapiens GN=ZNRF4 PE=2 SV=3
Length = 429
Score = 38.5 bits (88), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 201 VCRICLDICEEGNTLK-MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEV 252
+C ICLD EEG+ LK + CS H +C WFS ++C VC + V
Sbjct: 308 LCAICLDEYEEGDQLKILPCS-----HTYHCKCIDPWFSQAPRRSCPVCKQSV 355
>sp|Q5XIL0|RN167_RAT E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167
PE=2 SV=1
Length = 349
Score = 38.5 bits (88), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 11/112 (9%)
Query: 146 TAVSRSLSVPGRNIVIVRSVSLPTRRDHVQTD-TSDDQIVPAPMENNDEEIAEEEAVCRI 204
T + L + ++IVR + R +Q + + +Q+ P +D + +E VC I
Sbjct: 178 TGIVGLLVLAMGTVLIVRCIQ---HRKRLQRNRLTKEQLKQIP--THDYQKGDEYDVCAI 232
Query: 205 CLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLP 256
CLD E+G+ L++ C A H C W T+ K C +C + V P
Sbjct: 233 CLDEYEDGDKLRI-LPCAHA---YHSRCVDPWL-TQTRKTCPICKQPVHRGP 279
>sp|Q555H8|LTN1_DICDI E3 ubiquitin-protein ligase listerin OS=Dictyostelium discoideum
GN=rnf160 PE=3 SV=1
Length = 1864
Score = 38.1 bits (87), Expect = 0.091, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 201 VCRICLDICEEGNTLKMEC-SCKGALRLVHEECAIRWFSTKGNKNCEVC 248
VC IC + G K +C +CK H C +WF T NC +C
Sbjct: 1814 VCPICYSMFHNGTIPKFQCKTCKNKF---HAGCIYKWFQTSHKSNCPLC 1859
>sp|Q99ML9|RN111_MOUSE E3 ubiquitin-protein ligase Arkadia OS=Mus musculus GN=Rnf111 PE=1
SV=1
Length = 989
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 202 CRICLDICEEGNTL-KMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253
C ICL I EEG + ++ C + L H+ C +W T NK C +C +++
Sbjct: 937 CTICLSILEEGEDVRRLPC-----MHLFHQVCVDQWLIT--NKKCPICRVDIE 982
>sp|Q6ZNA4|RN111_HUMAN E3 ubiquitin-protein ligase Arkadia OS=Homo sapiens GN=RNF111 PE=1
SV=3
Length = 994
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 202 CRICLDICEEGNTL-KMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253
C ICL I EEG + ++ C + L H+ C +W T NK C +C +++
Sbjct: 942 CTICLSILEEGEDVRRLPC-----MHLFHQVCVDQWLIT--NKKCPICRVDIE 987
>sp|Q5R476|RN111_PONAB E3 ubiquitin-protein ligase Arkadia OS=Pongo abelii GN=RNF111 PE=2
SV=1
Length = 986
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 202 CRICLDICEEGNTL-KMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253
C ICL I EEG + ++ C + L H+ C +W T NK C +C +++
Sbjct: 934 CTICLSILEEGEDVRRLPC-----MHLFHQVCVDQWLIT--NKKCPICRVDIE 979
>sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia OS=Xenopus tropicalis GN=rnf111
PE=2 SV=1
Length = 954
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 166 SLPTRRDHVQTDTSDDQIVPAPMENNDEEIAEEEAVCRICLDICEEGNTL-KMECSCKGA 224
+ P + + V TD + + + + + + E C ICL I EEG + ++ C
Sbjct: 866 TYPHKYEKVSTDWFSQRKLHSKQDGEEATEEDTEEKCTICLSILEEGEDVRRLPC----- 920
Query: 225 LRLVHEECAIRWFSTKGNKNCEVC 248
+ L H+ C +W T NK C +C
Sbjct: 921 MHLFHQVCVDQWLIT--NKKCPIC 942
>sp|Q90ZT7|R111A_XENLA E3 ubiquitin-protein ligase arkadia-A (Fragment) OS=Xenopus laevis
GN=rnf111-a PE=2 SV=1
Length = 923
Score = 37.0 bits (84), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 202 CRICLDICEEGNTL-KMECSCKGALRLVHEECAIRWFSTKGNKNCEVC 248
C ICL I EEG + ++ C + L H+ C +W T NK C +C
Sbjct: 871 CTICLSILEEGEDVRRLPC-----MHLFHQVCVDQWLIT--NKKCPIC 911
>sp|Q9H6Y7|RN167_HUMAN E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1
SV=1
Length = 350
Score = 37.0 bits (84), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 191 NDEEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGK 250
+D + ++ VC ICLD E+G+ L++ C A H C W T+ K C +C +
Sbjct: 219 HDYQKGDQYDVCAICLDEYEDGDKLRV-LPCAHA---YHSRCVDPWL-TQTRKTCPICKQ 273
Query: 251 EVQNLP 256
V P
Sbjct: 274 PVHRGP 279
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.129 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,857,042
Number of Sequences: 539616
Number of extensions: 5111612
Number of successful extensions: 16203
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 153
Number of HSP's that attempted gapping in prelim test: 16018
Number of HSP's gapped (non-prelim): 349
length of query: 331
length of database: 191,569,459
effective HSP length: 118
effective length of query: 213
effective length of database: 127,894,771
effective search space: 27241586223
effective search space used: 27241586223
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)