Query 020096
Match_columns 331
No_of_seqs 246 out of 877
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 06:59:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020096.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020096hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00744 RINGv The RING-vari 99.7 1.6E-17 3.4E-22 120.9 2.8 49 201-249 1-49 (49)
2 PHA02825 LAP/PHD finger-like p 99.6 1.4E-16 2.9E-21 141.4 5.5 60 193-255 2-61 (162)
3 PF12906 RINGv: RING-variant d 99.6 6.2E-17 1.3E-21 116.9 0.6 47 202-248 1-47 (47)
4 PHA02862 5L protein; Provision 99.6 1.3E-15 2.9E-20 133.6 8.6 55 199-256 2-56 (156)
5 KOG1609 Protein involved in mR 99.5 4E-15 8.6E-20 138.7 2.5 74 190-263 69-144 (323)
6 COG5183 SSM4 Protein involved 99.5 6.5E-15 1.4E-19 155.0 3.8 62 197-258 10-71 (1175)
7 KOG3053 Uncharacterized conser 99.3 4.3E-13 9.4E-18 127.0 2.9 67 193-259 14-88 (293)
8 KOG4628 Predicted E3 ubiquitin 98.3 3.3E-07 7.1E-12 90.6 3.4 49 200-254 230-279 (348)
9 PF13639 zf-RING_2: Ring finge 98.0 1.8E-06 4E-11 60.4 1.2 42 201-249 2-44 (44)
10 PHA02929 N1R/p28-like protein; 97.5 5.7E-05 1.2E-09 71.5 2.8 51 198-255 173-229 (238)
11 COG5540 RING-finger-containing 97.4 0.00014 3.1E-09 71.4 3.8 50 197-253 321-372 (374)
12 COG5243 HRD1 HRD ubiquitin lig 97.3 0.00021 4.6E-09 71.8 3.6 53 193-252 281-344 (491)
13 PF12678 zf-rbx1: RING-H2 zinc 97.2 0.00026 5.7E-09 55.2 2.6 44 199-249 19-73 (73)
14 PF13920 zf-C3HC4_3: Zinc fing 97.1 0.00023 5.1E-09 51.0 1.9 48 198-254 1-49 (50)
15 cd00162 RING RING-finger (Real 97.1 0.00044 9.6E-09 46.0 2.8 45 201-252 1-45 (45)
16 PLN03208 E3 ubiquitin-protein 97.0 0.0007 1.5E-08 62.6 3.6 50 198-254 17-80 (193)
17 smart00184 RING Ring finger. E 96.8 0.0011 2.3E-08 42.6 2.3 39 202-248 1-39 (39)
18 PF11793 FANCL_C: FANCL C-term 96.7 0.00039 8.5E-09 54.0 -0.2 52 199-253 2-66 (70)
19 KOG0802 E3 ubiquitin ligase [P 96.4 0.002 4.3E-08 66.9 2.7 50 195-251 287-339 (543)
20 PF12861 zf-Apc11: Anaphase-pr 96.4 0.0022 4.7E-08 52.4 2.4 52 199-254 21-83 (85)
21 KOG1493 Anaphase-promoting com 96.4 0.0013 2.8E-08 53.2 0.9 50 201-254 22-82 (84)
22 PF00097 zf-C3HC4: Zinc finger 96.2 0.0038 8.3E-08 42.5 2.4 41 202-248 1-41 (41)
23 PHA02926 zinc finger-like prot 96.2 0.0039 8.5E-08 59.1 3.1 54 197-255 168-232 (242)
24 KOG0823 Predicted E3 ubiquitin 95.7 0.011 2.5E-07 55.9 4.2 57 195-258 43-103 (230)
25 KOG4265 Predicted E3 ubiquitin 95.2 0.027 5.8E-07 56.3 4.8 53 194-254 285-337 (349)
26 PF13923 zf-C3HC4_2: Zinc fing 95.1 0.013 2.9E-07 40.0 1.8 38 202-248 1-39 (39)
27 COG5219 Uncharacterized conser 95.0 0.0065 1.4E-07 67.2 0.1 55 197-254 1467-1524(1525)
28 smart00504 Ubox Modified RING 94.9 0.03 6.5E-07 40.9 3.4 45 200-253 2-46 (63)
29 KOG0828 Predicted E3 ubiquitin 94.5 0.026 5.6E-07 58.9 2.8 57 191-253 563-634 (636)
30 KOG0317 Predicted E3 ubiquitin 94.4 0.045 9.8E-07 53.5 4.1 56 191-255 231-286 (293)
31 TIGR00599 rad18 DNA repair pro 94.1 0.031 6.8E-07 56.7 2.6 50 196-254 23-72 (397)
32 KOG0827 Predicted E3 ubiquitin 93.9 0.037 8.1E-07 56.3 2.5 46 199-249 4-52 (465)
33 PF14634 zf-RING_5: zinc-RING 93.6 0.048 1E-06 38.3 2.0 42 202-250 2-44 (44)
34 PF14570 zf-RING_4: RING/Ubox 92.7 0.077 1.7E-06 39.2 2.0 46 202-253 1-48 (48)
35 KOG0320 Predicted E3 ubiquitin 91.5 0.51 1.1E-05 43.7 6.2 57 190-253 122-178 (187)
36 COG5194 APC11 Component of SCF 89.7 0.27 5.8E-06 40.3 2.5 27 226-254 56-82 (88)
37 KOG0804 Cytoplasmic Zn-finger 89.6 0.12 2.5E-06 53.5 0.5 51 194-253 170-222 (493)
38 KOG1645 RING-finger-containing 88.6 0.33 7.2E-06 49.8 2.8 64 197-265 2-71 (463)
39 KOG0825 PHD Zn-finger protein 88.3 0.22 4.7E-06 54.8 1.3 51 198-255 122-173 (1134)
40 KOG1734 Predicted RING-contain 87.6 0.13 2.7E-06 50.5 -0.8 51 198-253 223-281 (328)
41 PF15227 zf-C3HC4_4: zinc fing 86.4 0.41 8.8E-06 33.7 1.4 40 202-248 1-42 (42)
42 KOG1785 Tyrosine kinase negati 86.3 0.25 5.4E-06 50.8 0.4 51 198-255 368-418 (563)
43 PF05883 Baculo_RING: Baculovi 85.7 0.25 5.4E-06 43.6 0.1 42 198-239 25-68 (134)
44 KOG2930 SCF ubiquitin ligase, 85.2 0.48 1.1E-05 40.5 1.6 27 226-254 83-109 (114)
45 PF13445 zf-RING_UBOX: RING-ty 84.2 0.67 1.4E-05 33.2 1.7 40 202-246 1-43 (43)
46 KOG4445 Uncharacterized conser 84.2 0.38 8.2E-06 47.9 0.5 49 200-253 116-186 (368)
47 PF04564 U-box: U-box domain; 81.3 0.8 1.7E-05 35.4 1.3 48 199-254 4-51 (73)
48 KOG2177 Predicted E3 ubiquitin 79.9 0.76 1.6E-05 40.3 0.8 49 193-250 7-55 (386)
49 TIGR00570 cdk7 CDK-activating 79.9 1.7 3.7E-05 43.1 3.3 50 199-254 3-55 (309)
50 KOG2164 Predicted E3 ubiquitin 79.9 4 8.6E-05 43.1 6.1 57 199-262 186-248 (513)
51 PLN02638 cellulose synthase A 78.8 1.6 3.4E-05 49.6 3.0 52 198-255 16-72 (1079)
52 PLN02189 cellulose synthase 78.3 1.3 2.9E-05 50.0 2.3 52 198-254 33-88 (1040)
53 KOG0801 Predicted E3 ubiquitin 77.1 1.4 2.9E-05 40.7 1.6 28 194-221 172-200 (205)
54 PF07800 DUF1644: Protein of u 76.7 2.9 6.2E-05 38.1 3.5 54 198-255 1-93 (162)
55 PF14569 zf-UDP: Zinc-binding 76.3 2.6 5.6E-05 34.4 2.8 52 198-255 8-64 (80)
56 PLN02436 cellulose synthase A 75.8 1.8 3.8E-05 49.2 2.3 52 198-254 35-90 (1094)
57 COG5175 MOT2 Transcriptional r 75.2 2.2 4.8E-05 43.3 2.6 52 197-254 12-65 (480)
58 KOG0802 E3 ubiquitin ligase [P 74.5 1.7 3.8E-05 45.4 1.8 54 188-254 468-521 (543)
59 PF10367 Vps39_2: Vacuolar sor 74.0 1.1 2.5E-05 35.5 0.2 34 197-235 76-109 (109)
60 COG5236 Uncharacterized conser 73.0 4.6 0.0001 41.2 4.2 60 191-257 53-112 (493)
61 PLN02400 cellulose synthase 72.7 2 4.4E-05 48.8 1.9 52 198-255 35-91 (1085)
62 KOG1039 Predicted E3 ubiquitin 72.2 2.6 5.7E-05 42.4 2.3 54 197-255 159-223 (344)
63 PLN02195 cellulose synthase A 71.7 3.4 7.3E-05 46.7 3.2 50 198-253 5-59 (977)
64 KOG1952 Transcription factor N 70.6 3.7 8.1E-05 45.7 3.2 61 195-259 187-253 (950)
65 COG5574 PEX10 RING-finger-cont 70.0 4.4 9.5E-05 39.6 3.2 50 197-254 213-263 (271)
66 PF08746 zf-RING-like: RING-li 68.0 3.1 6.7E-05 29.6 1.4 22 227-248 22-43 (43)
67 KOG0956 PHD finger protein AF1 67.3 2.6 5.7E-05 46.1 1.3 59 197-255 115-184 (900)
68 KOG3970 Predicted E3 ubiquitin 66.8 4.9 0.00011 38.9 2.8 51 197-252 48-104 (299)
69 KOG1973 Chromatin remodeling p 65.5 2.4 5.2E-05 40.9 0.5 52 199-253 218-270 (274)
70 COG5432 RAD18 RING-finger-cont 64.3 3 6.6E-05 41.6 0.9 49 198-255 24-72 (391)
71 PLN02915 cellulose synthase A 62.0 4.9 0.00011 45.7 2.1 51 198-254 14-69 (1044)
72 KOG1002 Nucleotide excision re 59.4 4.7 0.0001 43.2 1.3 53 194-253 531-586 (791)
73 KOG4692 Predicted E3 ubiquitin 57.9 7.4 0.00016 39.9 2.4 49 197-254 420-468 (489)
74 KOG1428 Inhibitor of type V ad 57.8 9.1 0.0002 45.6 3.2 56 195-255 3482-3546(3738)
75 KOG4172 Predicted E3 ubiquitin 57.5 6.3 0.00014 30.5 1.4 49 200-255 8-56 (62)
76 PF10272 Tmpp129: Putative tra 57.4 8.9 0.00019 38.9 2.9 35 218-255 308-353 (358)
77 PF12459 DUF3687: D-Ala-teicho 55.7 24 0.00051 25.6 4.0 37 287-323 3-39 (42)
78 KOG1941 Acetylcholine receptor 55.5 3.6 7.8E-05 42.5 -0.2 51 196-251 362-414 (518)
79 KOG0287 Postreplication repair 52.7 4.9 0.00011 40.9 0.2 47 199-254 23-69 (442)
80 KOG0824 Predicted E3 ubiquitin 44.4 16 0.00035 36.5 2.3 45 198-253 6-53 (324)
81 KOG4323 Polycomb-like PHD Zn-f 43.5 10 0.00022 39.8 0.8 59 195-256 164-229 (464)
82 COG5034 TNG2 Chromatin remodel 43.3 12 0.00027 36.5 1.3 30 220-251 241-270 (271)
83 KOG2660 Locus-specific chromos 42.8 12 0.00025 37.7 1.1 51 197-255 13-63 (331)
84 KOG3268 Predicted E3 ubiquitin 42.1 23 0.00049 33.4 2.8 57 197-253 163-228 (234)
85 PF12273 RCR: Chitin synthesis 41.8 24 0.00052 30.0 2.7 37 287-324 2-41 (130)
86 PF05290 Baculo_IE-1: Baculovi 38.3 21 0.00045 31.9 1.8 55 198-254 79-133 (140)
87 KOG0825 PHD Zn-finger protein 38.0 12 0.00025 42.0 0.3 51 194-249 210-264 (1134)
88 PF15013 CCSMST1: CCSMST1 fami 37.8 24 0.00053 28.5 2.0 21 285-305 29-50 (77)
89 KOG0955 PHD finger protein BR1 37.0 12 0.00026 42.9 0.1 59 194-254 214-272 (1051)
90 PF01440 Gemini_AL2: Geminivir 36.4 6.1 0.00013 35.0 -1.8 32 214-248 32-63 (134)
91 KOG4443 Putative transcription 36.3 16 0.00035 39.8 1.0 33 215-249 34-75 (694)
92 KOG3005 GIY-YIG type nuclease 34.0 17 0.00037 35.7 0.7 55 199-253 182-243 (276)
93 KOG0956 PHD finger protein AF1 33.8 23 0.0005 39.1 1.7 53 201-254 7-74 (900)
94 PF04641 Rtf2: Rtf2 RING-finge 32.8 40 0.00086 32.1 2.9 54 194-255 108-163 (260)
95 COG4640 Predicted membrane pro 32.0 26 0.00056 36.5 1.6 57 242-303 15-71 (465)
96 KOG4275 Predicted E3 ubiquitin 30.5 3.9 8.5E-05 40.8 -4.3 43 199-253 300-342 (350)
97 KOG3899 Uncharacterized conser 29.6 29 0.00064 34.9 1.5 37 219-258 323-370 (381)
98 smart00249 PHD PHD zinc finger 27.6 17 0.00036 24.0 -0.4 30 201-234 1-30 (47)
99 PF07423 DUF1510: Protein of u 24.5 32 0.0007 32.6 0.7 23 283-305 14-36 (217)
100 KOG1940 Zn-finger protein [Gen 23.2 42 0.00092 33.0 1.3 42 202-250 161-204 (276)
101 PF06937 EURL: EURL protein; 23.1 82 0.0018 31.2 3.2 39 197-240 28-69 (285)
102 PHA03023 hypothetical protein; 23.1 45 0.00098 28.9 1.3 37 294-330 3-48 (112)
103 PF13894 zf-C2H2_4: C2H2-type 20.7 43 0.00093 19.1 0.5 11 244-254 2-12 (24)
104 KOG4159 Predicted E3 ubiquitin 20.7 62 0.0013 33.4 1.9 51 197-256 82-132 (398)
105 PF03854 zf-P11: P-11 zinc fin 20.6 50 0.0011 24.9 0.9 43 201-253 4-46 (50)
106 KOG1100 Predicted E3 ubiquitin 20.5 68 0.0015 30.0 2.0 41 200-253 159-200 (207)
No 1
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=99.68 E-value=1.6e-17 Score=120.94 Aligned_cols=49 Identities=51% Similarity=1.187 Sum_probs=45.6
Q ss_pred eeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccC
Q 020096 201 VCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCG 249 (331)
Q Consensus 201 ~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk 249 (331)
+||||++..+++++|++||.|+|+++|||++||.+|+..+++.+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 5999999656778899999999999999999999999999999999996
No 2
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=99.64 E-value=1.4e-16 Score=141.40 Aligned_cols=60 Identities=30% Similarity=0.728 Sum_probs=53.1
Q ss_pred ccccCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCcccccc
Q 020096 193 EEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (331)
Q Consensus 193 ed~~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~l 255 (331)
++.++.++.||||+++++ .+..||+|+|+++|||++||++|+..+++..||+|+++|...
T Consensus 2 ~~~s~~~~~CRIC~~~~~---~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 2 EDVSLMDKCCWICKDEYD---VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCcCCCCCeeEecCCCCC---CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 456678899999997642 457899999999999999999999999999999999999865
No 3
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=99.62 E-value=6.2e-17 Score=116.92 Aligned_cols=47 Identities=47% Similarity=1.128 Sum_probs=38.8
Q ss_pred eeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCcccccc
Q 020096 202 CRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVC 248 (331)
Q Consensus 202 CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEIC 248 (331)
||||+++++++++|+.||.|+|+++|||+.||++|+..+++.+||+|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 99999987766689999999999999999999999999999999998
No 4
>PHA02862 5L protein; Provisional
Probab=99.62 E-value=1.3e-15 Score=133.55 Aligned_cols=55 Identities=27% Similarity=0.759 Sum_probs=48.9
Q ss_pred CCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCccccccc
Q 020096 199 EAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLP 256 (331)
Q Consensus 199 e~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~lp 256 (331)
.+.||||+++++++ ..||.|+|+++|||++||.+|++.+++.+||+|+++|..-+
T Consensus 2 ~diCWIC~~~~~e~---~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~ 56 (156)
T PHA02862 2 SDICWICNDVCDER---NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKK 56 (156)
T ss_pred CCEEEEecCcCCCC---cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEE
Confidence 46899999876433 68999999999999999999999999999999999998643
No 5
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.51 E-value=4e-15 Score=138.68 Aligned_cols=74 Identities=41% Similarity=0.752 Sum_probs=62.4
Q ss_pred CCCccccCCCCeeeEeccCcCCCC--cccccccccCccceeCHHHHHHHHHhcCCccccccCcccccccceeeccc
Q 020096 190 NNDEEIAEEEAVCRICLDICEEGN--TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLPVTLLRMS 263 (331)
Q Consensus 190 ~~~ed~~eee~~CRICle~~eeg~--~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~lpv~llr~~ 263 (331)
++.++.+.++..||||+++.++.+ .++.||.|+|+++|||+.|+++|+..+++..||+|++.|.+..+...+..
T Consensus 69 ~~~~~~~~~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~~~~~~~~ 144 (323)
T KOG1609|consen 69 ESLEESPSSGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVGTKLKPLI 144 (323)
T ss_pred CccccCCCCCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceecceeeccee
Confidence 455666666899999998765443 78999999999999999999999999999999999999998866554433
No 6
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.51 E-value=6.5e-15 Score=155.03 Aligned_cols=62 Identities=29% Similarity=0.766 Sum_probs=56.7
Q ss_pred CCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCcccccccce
Q 020096 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLPVT 258 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~lpv~ 258 (331)
++.+.||||+.++.+|++|..||+|.|+++|+|++||..|+..+++++||+|||+|++--++
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY 71 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIY 71 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeec
Confidence 34489999999988899999999999999999999999999999999999999999975443
No 7
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=4.3e-13 Score=126.96 Aligned_cols=67 Identities=28% Similarity=0.614 Sum_probs=56.4
Q ss_pred ccccCCCCeeeEeccCcCCC--CcccccccccCccceeCHHHHHHHHHhcC------CccccccCccccccccee
Q 020096 193 EEIAEEEAVCRICLDICEEG--NTLKMECSCKGALRLVHEECAIRWFSTKG------NKNCEVCGKEVQNLPVTL 259 (331)
Q Consensus 193 ed~~eee~~CRICle~~eeg--~~Li~PC~CkGslk~VH~~CL~kWl~~kg------~~~CEICk~~y~~lpv~l 259 (331)
.+..+.++.||||+..+++. ..|+.||.|+|+.||||+.||.+|+.+|. ...|+.|+++|..+-+.+
T Consensus 14 ~~~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~P~l 88 (293)
T KOG3053|consen 14 SDNQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVFPQL 88 (293)
T ss_pred CCccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeecccc
Confidence 46678899999999876543 24899999999999999999999999874 479999999999865444
No 8
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=3.3e-07 Score=90.63 Aligned_cols=49 Identities=31% Similarity=0.817 Sum_probs=43.0
Q ss_pred CeeeEeccCcCCCCcc-cccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 200 AVCRICLDICEEGNTL-KMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 200 ~~CRICle~~eeg~~L-i~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
..|-||+|++++|+.| ++||+ +.+|..|++.||... ...|++||+....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~-----H~FH~~CIDpWL~~~-r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCS-----HKFHVNCIDPWLTQT-RTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCC-----CchhhccchhhHhhc-CccCCCCCCcCCC
Confidence 7999999999999887 59999 489999999999986 4579999997664
No 9
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.02 E-value=1.8e-06 Score=60.35 Aligned_cols=42 Identities=33% Similarity=0.967 Sum_probs=33.2
Q ss_pred eeeEeccCcCCC-CcccccccccCccceeCHHHHHHHHHhcCCccccccC
Q 020096 201 VCRICLDICEEG-NTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCG 249 (331)
Q Consensus 201 ~CRICle~~eeg-~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk 249 (331)
.|-||+++.+.+ ....++|. +.+|.+|+.+|++.+ .+|++|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~~~~~~--~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCG-----HVFHRSCIKEWLKRN--NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTS-----EEEEHHHHHHHHHHS--SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCC-----CeeCHHHHHHHHHhC--CcCCccC
Confidence 699999987544 44567875 699999999999885 4999995
No 10
>PHA02929 N1R/p28-like protein; Provisional
Probab=97.51 E-value=5.7e-05 Score=71.51 Aligned_cols=51 Identities=22% Similarity=0.589 Sum_probs=38.5
Q ss_pred CCCeeeEeccCcCCCC------cccccccccCccceeCHHHHHHHHHhcCCccccccCcccccc
Q 020096 198 EEAVCRICLDICEEGN------TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (331)
Q Consensus 198 ee~~CRICle~~eeg~------~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~l 255 (331)
.+..|-||++...+.. .+..+|. +.+|..|+.+|+..+ .+|++|+..+..+
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~-----H~FC~~CI~~Wl~~~--~tCPlCR~~~~~v 229 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCN-----HVFCIECIDIWKKEK--NTCPVCRTPFISV 229 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCC-----CcccHHHHHHHHhcC--CCCCCCCCEeeEE
Confidence 4578999998643221 2345776 589999999999864 5999999998754
No 11
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.00014 Score=71.36 Aligned_cols=50 Identities=20% Similarity=0.619 Sum_probs=40.5
Q ss_pred CCCCeeeEeccCcCCCCc-ccccccccCccceeCHHHHHHHHH-hcCCccccccCcccc
Q 020096 197 EEEAVCRICLDICEEGNT-LKMECSCKGALRLVHEECAIRWFS-TKGNKNCEVCGKEVQ 253 (331)
Q Consensus 197 eee~~CRICle~~eeg~~-Li~PC~CkGslk~VH~~CL~kWl~-~kg~~~CEICk~~y~ 253 (331)
+.+-.|-||++....++. .++||+ +-+|..|+++|+. .+ ..|++|++++.
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~-----H~FH~~Cv~kW~~~y~--~~CPvCrt~iP 372 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCD-----HRFHVGCVDKWLLGYS--NKCPVCRTAIP 372 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccC-----ceechhHHHHHHhhhc--ccCCccCCCCC
Confidence 456899999988765555 469999 4899999999997 54 48999999864
No 12
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.00021 Score=71.80 Aligned_cols=53 Identities=23% Similarity=0.772 Sum_probs=40.5
Q ss_pred ccccCCCCeeeEeccCc-CCC----------CcccccccccCccceeCHHHHHHHHHhcCCccccccCccc
Q 020096 193 EEIAEEEAVCRICLDIC-EEG----------NTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEV 252 (331)
Q Consensus 193 ed~~eee~~CRICle~~-eeg----------~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y 252 (331)
|.-...+..|-||+++- +.+ .+-.+||. +..|-+||+.|+..++ +|+||+.++
T Consensus 281 eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCG-----HilHl~CLknW~ERqQ--TCPICr~p~ 344 (491)
T COG5243 281 EQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCG-----HILHLHCLKNWLERQQ--TCPICRRPV 344 (491)
T ss_pred hhhcCCCCeEEEecccccCCCCccCcccccCCccccccc-----ceeeHHHHHHHHHhcc--CCCcccCcc
Confidence 33356678999999872 222 23468998 4899999999998865 999999984
No 13
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.17 E-value=0.00026 Score=55.19 Aligned_cols=44 Identities=23% Similarity=0.693 Sum_probs=30.5
Q ss_pred CCeeeEeccCcCC--------C--Ccc-cccccccCccceeCHHHHHHHHHhcCCccccccC
Q 020096 199 EAVCRICLDICEE--------G--NTL-KMECSCKGALRLVHEECAIRWFSTKGNKNCEVCG 249 (331)
Q Consensus 199 e~~CRICle~~ee--------g--~~L-i~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk 249 (331)
+..|-||++...+ + -++ ..+|. +.+|..||.+|+.... +|++|+
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~-----H~FH~~Ci~~Wl~~~~--~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCG-----HIFHFHCISQWLKQNN--TCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTS-----EEEEHHHHHHHHTTSS--B-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccC-----CCEEHHHHHHHHhcCC--cCCCCC
Confidence 3349999976521 1 122 35786 5899999999997754 999996
No 14
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=97.14 E-value=0.00023 Score=51.03 Aligned_cols=48 Identities=29% Similarity=0.733 Sum_probs=36.9
Q ss_pred CCCeeeEeccCcCCCCcccccccccCccce-eCHHHHHHHHHhcCCccccccCccccc
Q 020096 198 EEAVCRICLDICEEGNTLKMECSCKGALRL-VHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 198 ee~~CRICle~~eeg~~Li~PC~CkGslk~-VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
|+..|.||++.. .+.+..||.. . +...|+.+|+. ....|++|++++..
T Consensus 1 ~~~~C~iC~~~~--~~~~~~pCgH-----~~~C~~C~~~~~~--~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 1 EDEECPICFENP--RDVVLLPCGH-----LCFCEECAERLLK--RKKKCPICRQPIES 49 (50)
T ss_dssp -HSB-TTTSSSB--SSEEEETTCE-----EEEEHHHHHHHHH--TTSBBTTTTBB-SE
T ss_pred CcCCCccCCccC--CceEEeCCCC-----hHHHHHHhHHhcc--cCCCCCcCChhhcC
Confidence 346799999863 3577899984 5 99999999999 46799999998864
No 15
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.09 E-value=0.00044 Score=45.99 Aligned_cols=45 Identities=22% Similarity=0.770 Sum_probs=33.2
Q ss_pred eeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCccc
Q 020096 201 VCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEV 252 (331)
Q Consensus 201 ~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y 252 (331)
.|.||++... ......+|. +.+|..|+..|+.. +...|++|+..+
T Consensus 1 ~C~iC~~~~~-~~~~~~~C~-----H~~c~~C~~~~~~~-~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR-EPVVLLPCG-----HVFCRSCIDKWLKS-GKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh-CceEecCCC-----ChhcHHHHHHHHHh-CcCCCCCCCCcC
Confidence 4889987652 223345587 47999999999987 567899998753
No 16
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=96.96 E-value=0.0007 Score=62.58 Aligned_cols=50 Identities=26% Similarity=0.622 Sum_probs=39.4
Q ss_pred CCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhc--------------CCccccccCccccc
Q 020096 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK--------------GNKNCEVCGKEVQN 254 (331)
Q Consensus 198 ee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k--------------g~~~CEICk~~y~~ 254 (331)
++-.|-||++... ++.+.+|. +.++..||.+|+..+ +...|++|+..+..
T Consensus 17 ~~~~CpICld~~~--dPVvT~CG-----H~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 17 GDFDCNICLDQVR--DPVVTLCG-----HLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CccCCccCCCcCC--CcEEcCCC-----chhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 4578999998643 57888987 589999999998642 34689999999864
No 17
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=96.75 E-value=0.0011 Score=42.58 Aligned_cols=39 Identities=28% Similarity=0.891 Sum_probs=30.7
Q ss_pred eeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCcccccc
Q 020096 202 CRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVC 248 (331)
Q Consensus 202 CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEIC 248 (331)
|.||++. ..+....||.. .+|..|+..|+. .+...|++|
T Consensus 1 C~iC~~~--~~~~~~~~C~H-----~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE--LKDPVVLPCGH-----TFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccC--CCCcEEecCCC-----hHHHHHHHHHHH-hCcCCCCCC
Confidence 7789876 33567789874 689999999998 455689887
No 18
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.68 E-value=0.00039 Score=54.02 Aligned_cols=52 Identities=27% Similarity=0.654 Sum_probs=24.2
Q ss_pred CCeeeEeccCcC-CCCcccccc---cccCccceeCHHHHHHHHHhcC---------CccccccCcccc
Q 020096 199 EAVCRICLDICE-EGNTLKMEC---SCKGALRLVHEECAIRWFSTKG---------NKNCEVCGKEVQ 253 (331)
Q Consensus 199 e~~CRICle~~e-eg~~Li~PC---~CkGslk~VH~~CL~kWl~~kg---------~~~CEICk~~y~ 253 (331)
+..|.||+.... .+.....-| .|+ +.+|..||.+||.... .-.|+.|+.++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~---~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCG---KKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT-------B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccC---CHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 457999997644 333223334 564 5899999999997531 136999999875
No 19
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.002 Score=66.92 Aligned_cols=50 Identities=28% Similarity=0.830 Sum_probs=39.8
Q ss_pred ccCCCCeeeEeccCcCCC-C--cccccccccCccceeCHHHHHHHHHhcCCccccccCcc
Q 020096 195 IAEEEAVCRICLDICEEG-N--TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKE 251 (331)
Q Consensus 195 ~~eee~~CRICle~~eeg-~--~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~ 251 (331)
.......|.||+++...+ + +-++||. +.+|..||.+|+..+ .+|++|+..
T Consensus 287 ~~~~~~~C~IC~e~l~~~~~~~~~rL~C~-----Hifh~~CL~~W~er~--qtCP~CR~~ 339 (543)
T KOG0802|consen 287 LALSDELCIICLEELHSGHNITPKRLPCG-----HIFHDSCLRSWFERQ--QTCPTCRTV 339 (543)
T ss_pred hhhcCCeeeeechhhccccccccceeecc-----cchHHHHHHHHHHHh--CcCCcchhh
Confidence 345578999999875432 2 5678998 589999999999985 499999994
No 20
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.39 E-value=0.0022 Score=52.41 Aligned_cols=52 Identities=27% Similarity=0.663 Sum_probs=37.2
Q ss_pred CCeeeEeccCcC--------CCC--cccccccccCccceeCHHHHHHHHHhc-CCccccccCccccc
Q 020096 199 EAVCRICLDICE--------EGN--TLKMECSCKGALRLVHEECAIRWFSTK-GNKNCEVCGKEVQN 254 (331)
Q Consensus 199 e~~CRICle~~e--------eg~--~Li~PC~CkGslk~VH~~CL~kWl~~k-g~~~CEICk~~y~~ 254 (331)
+.+|-||....+ +|+ +++ =+.|. +.+|..||.+|+... .+..|++|++++++
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv-~g~C~---H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLV-WGKCS---HNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCcee-eccCc---cHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 667999986543 122 332 23453 579999999999874 46799999999864
No 21
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.0013 Score=53.19 Aligned_cols=50 Identities=26% Similarity=0.656 Sum_probs=38.0
Q ss_pred eeeEeccCcC--------CCC--cccccccccCccceeCHHHHHHHHHhcC-CccccccCccccc
Q 020096 201 VCRICLDICE--------EGN--TLKMECSCKGALRLVHEECAIRWFSTKG-NKNCEVCGKEVQN 254 (331)
Q Consensus 201 ~CRICle~~e--------eg~--~Li~PC~CkGslk~VH~~CL~kWl~~kg-~~~CEICk~~y~~ 254 (331)
+|-||..+.+ +|+ +|+.. .|. +.+|..|+.+|+..+. ...|+.|++.+++
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G-~C~---h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWG-YCL---HAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHH-HHH---HHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 8999997643 232 66655 442 5899999999998875 4699999999875
No 22
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.18 E-value=0.0038 Score=42.51 Aligned_cols=41 Identities=27% Similarity=0.882 Sum_probs=33.0
Q ss_pred eeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCcccccc
Q 020096 202 CRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVC 248 (331)
Q Consensus 202 CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEIC 248 (331)
|.||++..+. .....+|. +.++..|+.+|+...+...|++|
T Consensus 1 C~iC~~~~~~-~~~~~~C~-----H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFED-PVILLPCG-----HSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSS-EEEETTTS-----EEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccC-CCEEecCC-----CcchHHHHHHHHHhcCCccCCcC
Confidence 7899886543 12378998 47999999999998778899988
No 23
>PHA02926 zinc finger-like protein; Provisional
Probab=96.16 E-value=0.0039 Score=59.12 Aligned_cols=54 Identities=26% Similarity=0.679 Sum_probs=40.5
Q ss_pred CCCCeeeEeccCcC----CCC---cccccccccCccceeCHHHHHHHHHhcC----CccccccCcccccc
Q 020096 197 EEEAVCRICLDICE----EGN---TLKMECSCKGALRLVHEECAIRWFSTKG----NKNCEVCGKEVQNL 255 (331)
Q Consensus 197 eee~~CRICle~~e----eg~---~Li~PC~CkGslk~VH~~CL~kWl~~kg----~~~CEICk~~y~~l 255 (331)
..+.+|-||++.-- .++ .+..+|. +.+...|+.+|...+. ...|++|+..+.++
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~Cn-----HsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I 232 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCN-----HIFCITCINIWHRTRRETGASDNCPICRTRFRNI 232 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCC-----chHHHHHHHHHHHhccccCcCCcCCCCcceeeee
Confidence 45688999997631 111 3566888 4799999999998642 46799999999875
No 24
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.011 Score=55.95 Aligned_cols=57 Identities=30% Similarity=0.648 Sum_probs=45.4
Q ss_pred ccCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcC-CccccccCccccc---ccce
Q 020096 195 IAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKG-NKNCEVCGKEVQN---LPVT 258 (331)
Q Consensus 195 ~~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg-~~~CEICk~~y~~---lpv~ 258 (331)
.+...-.|-||++..+ ++++..|. +++==-||-+|+.... .+.|++||..+.. +|++
T Consensus 43 ~~~~~FdCNICLd~ak--dPVvTlCG-----HLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLAK--DPVVTLCG-----HLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCCCceeeeeeccccC--CCEEeecc-----cceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 4566778999998754 58999998 4888899999999876 4677999999764 5554
No 25
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.027 Score=56.34 Aligned_cols=53 Identities=23% Similarity=0.525 Sum_probs=39.8
Q ss_pred cccCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 194 EIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 194 d~~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
++.+++..|-||+.+ ..+.+++||+. -.+=..|++.-.-. ...|+||++.+.-
T Consensus 285 ~~~~~gkeCVIClse--~rdt~vLPCRH----LCLCs~Ca~~Lr~q--~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 285 DESESGKECVICLSE--SRDTVVLPCRH----LCLCSGCAKSLRYQ--TNNCPICRQPIEE 337 (349)
T ss_pred ccccCCCeeEEEecC--CcceEEecchh----hehhHhHHHHHHHh--hcCCCccccchHh
Confidence 456779999999975 34689999874 13556798877633 3589999999874
No 26
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=95.10 E-value=0.013 Score=39.97 Aligned_cols=38 Identities=32% Similarity=0.818 Sum_probs=29.3
Q ss_pred eeEeccCcCCCCc-ccccccccCccceeCHHHHHHHHHhcCCcccccc
Q 020096 202 CRICLDICEEGNT-LKMECSCKGALRLVHEECAIRWFSTKGNKNCEVC 248 (331)
Q Consensus 202 CRICle~~eeg~~-Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEIC 248 (331)
|.||++... ++ ...+|. +.+.++|+.+|+.. +..|++|
T Consensus 1 C~iC~~~~~--~~~~~~~CG-----H~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELR--DPVVVTPCG-----HSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-S--SEEEECTTS-----EEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCccc--CcCEECCCC-----CchhHHHHHHHHHC--cCCCcCC
Confidence 779987643 46 578998 58999999999988 3699987
No 27
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.04 E-value=0.0065 Score=67.17 Aligned_cols=55 Identities=27% Similarity=0.798 Sum_probs=38.6
Q ss_pred CCCCeeeEeccCcC-CCCccc-ccc-cccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 197 EEEAVCRICLDICE-EGNTLK-MEC-SCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 197 eee~~CRICle~~e-eg~~Li-~PC-~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
+....|.||+.--. -+..|- .-| -|| .-+|-.||-+|++.+++.+|++|+.++.+
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCk---nKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCK---NKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhh---hhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 44567999985432 122221 112 233 36999999999999999999999988764
No 28
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=94.92 E-value=0.03 Score=40.94 Aligned_cols=45 Identities=13% Similarity=0.400 Sum_probs=36.3
Q ss_pred CeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCcccc
Q 020096 200 AVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (331)
Q Consensus 200 ~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~ 253 (331)
-.|.||++..+ ++++.||. +.+-+.|+.+|+.. +.+|++|+..+.
T Consensus 2 ~~Cpi~~~~~~--~Pv~~~~G-----~v~~~~~i~~~~~~--~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMK--DPVILPSG-----QTYERRAIEKWLLS--HGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCC--CCEECCCC-----CEEeHHHHHHHHHH--CCCCCCCcCCCC
Confidence 46999987643 47888874 68999999999987 458999998874
No 29
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=0.026 Score=58.89 Aligned_cols=57 Identities=25% Similarity=0.629 Sum_probs=40.6
Q ss_pred CCccccCCCCeeeEeccCcC---CC------------CcccccccccCccceeCHHHHHHHHHhcCCccccccCcccc
Q 020096 191 NDEEIAEEEAVCRICLDICE---EG------------NTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (331)
Q Consensus 191 ~~ed~~eee~~CRICle~~e---eg------------~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~ 253 (331)
.+|.-.+....|-||+..-+ .+ +-+..||. +.+|..||++|...- +..|++|+.+..
T Consensus 563 h~~~~~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~-----HifH~~CL~~WMd~y-kl~CPvCR~pLP 634 (636)
T KOG0828|consen 563 HLEAFVRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCH-----HIFHRQCLLQWMDTY-KLICPVCRCPLP 634 (636)
T ss_pred cccchhhccccceEeccccceeeccCcchhhhhhhhccccccchH-----HHHHHHHHHHHHhhh-cccCCccCCCCC
Confidence 33444667789999996532 11 23456998 589999999999842 358999998764
No 30
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.41 E-value=0.045 Score=53.52 Aligned_cols=56 Identities=25% Similarity=0.598 Sum_probs=45.6
Q ss_pred CCccccCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCcccccc
Q 020096 191 NDEEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (331)
Q Consensus 191 ~~ed~~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~l 255 (331)
++..+++....|-||++.- .++--+||. +.+=-.|++.|...+. .|++|+..++--
T Consensus 231 ~~~~i~~a~~kC~LCLe~~--~~pSaTpCG-----HiFCWsCI~~w~~ek~--eCPlCR~~~~ps 286 (293)
T KOG0317|consen 231 SLSSIPEATRKCSLCLENR--SNPSATPCG-----HIFCWSCILEWCSEKA--ECPLCREKFQPS 286 (293)
T ss_pred CCccCCCCCCceEEEecCC--CCCCcCcCc-----chHHHHHHHHHHcccc--CCCcccccCCCc
Confidence 4566777889999999863 356788998 4788899999999976 699999998753
No 31
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.14 E-value=0.031 Score=56.72 Aligned_cols=50 Identities=26% Similarity=0.557 Sum_probs=40.2
Q ss_pred cCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 196 ~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
-+....|.||++... ++.+.||. +.+...|+..|+... ..|++|+..+..
T Consensus 23 Le~~l~C~IC~d~~~--~PvitpCg-----H~FCs~CI~~~l~~~--~~CP~Cr~~~~~ 72 (397)
T TIGR00599 23 LDTSLRCHICKDFFD--VPVLTSCS-----HTFCSLCIRRCLSNQ--PKCPLCRAEDQE 72 (397)
T ss_pred cccccCCCcCchhhh--CccCCCCC-----CchhHHHHHHHHhCC--CCCCCCCCcccc
Confidence 345679999998653 46788998 489999999999874 489999998763
No 32
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.91 E-value=0.037 Score=56.27 Aligned_cols=46 Identities=30% Similarity=0.796 Sum_probs=32.9
Q ss_pred CCeeeEeccCcCCCCcc--cccccccCccceeCHHHHHHHHHhcC-CccccccC
Q 020096 199 EAVCRICLDICEEGNTL--KMECSCKGALRLVHEECAIRWFSTKG-NKNCEVCG 249 (331)
Q Consensus 199 e~~CRICle~~eeg~~L--i~PC~CkGslk~VH~~CL~kWl~~kg-~~~CEICk 249 (331)
.+.|.||-+.......| +.-|. +.+|..||.+||..-- ++.|++|+
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cG-----hifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCG-----HIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred cceeeEeccCCccccccccccchh-----hHHHHHHHHHHHccCCccCCCCcee
Confidence 46899995543322223 44565 4799999999998764 37999999
No 33
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=93.64 E-value=0.048 Score=38.28 Aligned_cols=42 Identities=24% Similarity=0.630 Sum_probs=34.2
Q ss_pred eeEeccCcC-CCCcccccccccCccceeCHHHHHHHHHhcCCccccccCc
Q 020096 202 CRICLDICE-EGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGK 250 (331)
Q Consensus 202 CRICle~~e-eg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~ 250 (331)
|-||++... +...++++|. +.+...|+.++. .....|++|++
T Consensus 2 C~~C~~~~~~~~~~~l~~Cg-----H~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCG-----HIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccC-----CHHHHHHHHhhc--CCCCCCcCCCC
Confidence 789998873 3356789997 589999999999 55679999985
No 34
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=92.72 E-value=0.077 Score=39.22 Aligned_cols=46 Identities=17% Similarity=0.504 Sum_probs=23.2
Q ss_pred eeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhc--CCccccccCcccc
Q 020096 202 CRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK--GNKNCEVCGKEVQ 253 (331)
Q Consensus 202 CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k--g~~~CEICk~~y~ 253 (331)
|.+|.+..+..+.-..||.|. ++-|+.=|.... ++..|+-|+.+|.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cg------f~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECG------FQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----------HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCcccccccCCCccccCcCC------CcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 667877665444557899994 677888888776 3689999999984
No 35
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.50 E-value=0.51 Score=43.69 Aligned_cols=57 Identities=23% Similarity=0.509 Sum_probs=42.9
Q ss_pred CCCccccCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCcccc
Q 020096 190 NNDEEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (331)
Q Consensus 190 ~~~ed~~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~ 253 (331)
+.++...+.-.-|-|||+..++..++-.-|. +.|=.+|++.-++. ...|++|+..+.
T Consensus 122 ~v~~~~~~~~~~CPiCl~~~sek~~vsTkCG-----HvFC~~Cik~alk~--~~~CP~C~kkIt 178 (187)
T KOG0320|consen 122 DVDPLRKEGTYKCPICLDSVSEKVPVSTKCG-----HVFCSQCIKDALKN--TNKCPTCRKKIT 178 (187)
T ss_pred cccccccccccCCCceecchhhccccccccc-----hhHHHHHHHHHHHh--CCCCCCcccccc
Confidence 4455555667899999998766555556776 47889999998876 569999997543
No 36
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=89.74 E-value=0.27 Score=40.34 Aligned_cols=27 Identities=30% Similarity=0.655 Sum_probs=24.3
Q ss_pred ceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 226 RLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 226 k~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
+.+|-.|+.+||..+| .|++|++++..
T Consensus 56 HaFH~HCI~rWL~Tk~--~CPld~q~w~~ 82 (88)
T COG5194 56 HAFHDHCIYRWLDTKG--VCPLDRQTWVL 82 (88)
T ss_pred hHHHHHHHHHHHhhCC--CCCCCCceeEE
Confidence 4799999999999976 99999999874
No 37
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.64 E-value=0.12 Score=53.48 Aligned_cols=51 Identities=24% Similarity=0.651 Sum_probs=36.6
Q ss_pred cccCCCCeeeEeccCcCCC--CcccccccccCccceeCHHHHHHHHHhcCCccccccCcccc
Q 020096 194 EIAEEEAVCRICLDICEEG--NTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (331)
Q Consensus 194 d~~eee~~CRICle~~eeg--~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~ 253 (331)
-...|.++|.+|++--+++ ..+-..|. +-+|..||++|-.. +|++|++.-.
T Consensus 170 ~~~tELPTCpVCLERMD~s~~gi~t~~c~-----Hsfh~~cl~~w~~~----scpvcR~~q~ 222 (493)
T KOG0804|consen 170 TGLTELPTCPVCLERMDSSTTGILTILCN-----HSFHCSCLMKWWDS----SCPVCRYCQS 222 (493)
T ss_pred CCcccCCCcchhHhhcCccccceeeeecc-----cccchHHHhhcccC----cChhhhhhcC
Confidence 3446789999999765432 33456787 47999999999765 6777776544
No 38
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.62 E-value=0.33 Score=49.83 Aligned_cols=64 Identities=27% Similarity=0.680 Sum_probs=46.9
Q ss_pred CCCCeeeEeccCcC-CCCc-cc-ccccccCccceeCHHHHHHHHHhcCCccccccCccccc---ccceeeccccc
Q 020096 197 EEEAVCRICLDICE-EGNT-LK-MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN---LPVTLLRMSSS 265 (331)
Q Consensus 197 eee~~CRICle~~e-eg~~-Li-~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~---lpv~llr~~~~ 265 (331)
+.+.+|-||+++.+ .||- ++ .-|. +.+-.+|+++|+-.+-...|++|+.+... .+.+.+|+++.
T Consensus 2 d~g~tcpiclds~~~~g~hr~vsl~cg-----hlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa~ 71 (463)
T KOG1645|consen 2 DCGTTCPICLDSYTTAGNHRIVSLQCG-----HLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQAM 71 (463)
T ss_pred CccccCceeeeeeeecCceEEeeeccc-----ccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHHH
Confidence 34678999999865 5553 43 4455 58999999999976667899999988654 35566776654
No 39
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=88.29 E-value=0.22 Score=54.77 Aligned_cols=51 Identities=24% Similarity=0.442 Sum_probs=38.3
Q ss_pred CCCeeeEeccCcCCCC-cccccccccCccceeCHHHHHHHHHhcCCccccccCcccccc
Q 020096 198 EEAVCRICLDICEEGN-TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (331)
Q Consensus 198 ee~~CRICle~~eeg~-~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~l 255 (331)
....|.||+...-++. .-..+|.| |+|..|+..|-+..+ +|++|+.+|..+
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H-----~FC~~Ci~sWsR~aq--TCPiDR~EF~~v 173 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAH-----YFCEECVGSWSRCAQ--TCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhhHHHHHHHHHhhcccccccc-----ccHHHHhhhhhhhcc--cCchhhhhhhee
Confidence 4567888886543322 12457887 999999999998854 999999999765
No 40
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.62 E-value=0.13 Score=50.49 Aligned_cols=51 Identities=33% Similarity=0.783 Sum_probs=38.9
Q ss_pred CCCeeeEeccCc-----CCC---CcccccccccCccceeCHHHHHHHHHhcCCccccccCcccc
Q 020096 198 EEAVCRICLDIC-----EEG---NTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (331)
Q Consensus 198 ee~~CRICle~~-----eeg---~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~ 253 (331)
+..+|-+|-... ++| +.-.+-|+ +-+|+-|+.-|-....+.+|+-||.++.
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCn-----HvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCN-----HVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecc-----cchHHHhhhhheeecCCCCCchHHHHhh
Confidence 456899997542 122 34457787 4899999999998877889999999875
No 41
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=86.38 E-value=0.41 Score=33.73 Aligned_cols=40 Identities=25% Similarity=0.733 Sum_probs=28.2
Q ss_pred eeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCC--cccccc
Q 020096 202 CRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGN--KNCEVC 248 (331)
Q Consensus 202 CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~--~~CEIC 248 (331)
|-||++-.. +++.++|. +-+=+.||.+|.+..+. ..|++|
T Consensus 1 CpiC~~~~~--~Pv~l~CG-----H~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK--DPVSLPCG-----HSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S--SEEE-SSS-----SEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC--CccccCCc-----CHHHHHHHHHHHHccCCcCCCCcCC
Confidence 778987643 58889997 47889999999987654 589887
No 42
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=86.29 E-value=0.25 Score=50.82 Aligned_cols=51 Identities=20% Similarity=0.558 Sum_probs=40.6
Q ss_pred CCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCcccccc
Q 020096 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (331)
Q Consensus 198 ee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~l 255 (331)
.-..|.||-+.+ .+.-|-||. ++.-..||..|....+..+|+.|+.+++-.
T Consensus 368 TFeLCKICaend--KdvkIEPCG-----HLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 368 TFELCKICAEND--KDVKIEPCG-----HLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred hHHHHHHhhccC--CCccccccc-----chHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 447899997643 244578998 478889999999888788999999998854
No 43
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=85.75 E-value=0.25 Score=43.63 Aligned_cols=42 Identities=19% Similarity=0.463 Sum_probs=27.8
Q ss_pred CCCeeeEeccCcCC-CCcccccccccCcc-ceeCHHHHHHHHHh
Q 020096 198 EEAVCRICLDICEE-GNTLKMECSCKGAL-RLVHEECAIRWFST 239 (331)
Q Consensus 198 ee~~CRICle~~ee-g~~Li~PC~CkGsl-k~VH~~CL~kWl~~ 239 (331)
-...|+||++.-.. +..+..+|.-.-.+ +.+|.+|+.+|-+.
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~ 68 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE 68 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh
Confidence 35789999986544 33445666543333 34999999999543
No 44
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=85.20 E-value=0.48 Score=40.50 Aligned_cols=27 Identities=30% Similarity=0.555 Sum_probs=23.4
Q ss_pred ceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 226 RLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 226 k~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
+.+|..|+.+||+.++ .|++|.++..+
T Consensus 83 HaFH~hCisrWlktr~--vCPLdn~eW~~ 109 (114)
T KOG2930|consen 83 HAFHFHCISRWLKTRN--VCPLDNKEWVF 109 (114)
T ss_pred hHHHHHHHHHHHhhcC--cCCCcCcceeE
Confidence 4799999999999865 99999998754
No 45
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=84.19 E-value=0.67 Score=33.17 Aligned_cols=40 Identities=20% Similarity=0.600 Sum_probs=22.5
Q ss_pred eeEeccCcCCCC-cccccccccCccceeCHHHHHHHHHhc--CCcccc
Q 020096 202 CRICLDICEEGN-TLKMECSCKGALRLVHEECAIRWFSTK--GNKNCE 246 (331)
Q Consensus 202 CRICle~~eeg~-~Li~PC~CkGslk~VH~~CL~kWl~~k--g~~~CE 246 (331)
|-||++-.++++ +.++||. +.+=++||++|++.+ +..+|+
T Consensus 1 CpIc~e~~~~~n~P~~L~CG-----H~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKEFSTEENPPMVLPCG-----HVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT----TTSS-EEE-SSS------EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCccccccCCCCCCEEEeCc-----cHHHHHHHHHHHhcCCCCeeeCc
Confidence 778888323334 6889987 478999999999975 456664
No 46
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=84.15 E-value=0.38 Score=47.86 Aligned_cols=49 Identities=22% Similarity=0.531 Sum_probs=35.6
Q ss_pred CeeeEeccCcCCCCc-ccccccccCccceeCHHHHHHHHHhc---------------------CCccccccCcccc
Q 020096 200 AVCRICLDICEEGNT-LKMECSCKGALRLVHEECAIRWFSTK---------------------GNKNCEVCGKEVQ 253 (331)
Q Consensus 200 ~~CRICle~~eeg~~-Li~PC~CkGslk~VH~~CL~kWl~~k---------------------g~~~CEICk~~y~ 253 (331)
..|-||+=..-+++. .+.+|. +|+|..||.++|..- -...|+||+..+.
T Consensus 116 gqCvICLygfa~~~~ft~T~C~-----Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTACD-----HYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CceEEEEEeecCCCceeeehhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 458888765544554 468998 599999999888642 1357999998865
No 47
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=81.28 E-value=0.8 Score=35.42 Aligned_cols=48 Identities=10% Similarity=0.262 Sum_probs=33.7
Q ss_pred CCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 199 EAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 199 e~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
+-.|-||++-- .++.+.||. +.+=+.|+++|+.. +..+|++|+..+..
T Consensus 4 ~f~CpIt~~lM--~dPVi~~~G-----~tyer~~I~~~l~~-~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 4 EFLCPITGELM--RDPVILPSG-----HTYERSAIERWLEQ-NGGTDPFTRQPLSE 51 (73)
T ss_dssp GGB-TTTSSB---SSEEEETTS-----EEEEHHHHHHHHCT-TSSB-TTT-SB-SG
T ss_pred ccCCcCcCcHh--hCceeCCcC-----CEEcHHHHHHHHHc-CCCCCCCCCCcCCc
Confidence 45688887653 358888875 58999999999997 45799999887653
No 48
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.95 E-value=0.76 Score=40.28 Aligned_cols=49 Identities=31% Similarity=0.682 Sum_probs=39.0
Q ss_pred ccccCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCc
Q 020096 193 EEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGK 250 (331)
Q Consensus 193 ed~~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~ 250 (331)
....+++..|.||++...+ +.++||. +.+=..|+..|+. ....|+.|+.
T Consensus 7 ~~~~~~~~~C~iC~~~~~~--p~~l~C~-----H~~c~~C~~~~~~--~~~~Cp~cr~ 55 (386)
T KOG2177|consen 7 LEVLQEELTCPICLEYFRE--PVLLPCG-----HNFCRACLTRSWE--GPLSCPVCRP 55 (386)
T ss_pred hhhccccccChhhHHHhhc--Ccccccc-----chHhHHHHHHhcC--CCcCCcccCC
Confidence 3445678899999987653 3788997 4677899999998 6689999994
No 49
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.89 E-value=1.7 Score=43.15 Aligned_cols=50 Identities=18% Similarity=0.434 Sum_probs=36.0
Q ss_pred CCeeeEeccCcC--CC-CcccccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 199 EAVCRICLDICE--EG-NTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 199 e~~CRICle~~e--eg-~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
+..|-||....- .. ..++.+|. +-+=..|+.+.+.. +...|++|+..+..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CG-----H~~C~sCv~~l~~~-~~~~CP~C~~~lrk 55 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCC-----CcccHHHHHHHhcC-CCCCCCCCCCccch
Confidence 468999997532 22 23567886 36778999997753 56799999988764
No 50
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.86 E-value=4 Score=43.07 Aligned_cols=57 Identities=21% Similarity=0.605 Sum_probs=40.9
Q ss_pred CCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhc---CCccccccCccccc---ccceeecc
Q 020096 199 EAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK---GNKNCEVCGKEVQN---LPVTLLRM 262 (331)
Q Consensus 199 e~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k---g~~~CEICk~~y~~---lpv~llr~ 262 (331)
+..|-||++...- +..+-|. +.+=-.||.+++... +-..|++|...+.. .||.+...
T Consensus 186 ~~~CPICL~~~~~--p~~t~CG-----HiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~ 248 (513)
T KOG2164|consen 186 DMQCPICLEPPSV--PVRTNCG-----HIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDD 248 (513)
T ss_pred CCcCCcccCCCCc--ccccccC-----ceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccc
Confidence 8899999986432 4444576 477889999988654 55799999998775 35554433
No 51
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=78.77 E-value=1.6 Score=49.61 Aligned_cols=52 Identities=25% Similarity=0.537 Sum_probs=36.5
Q ss_pred CCCeeeEeccCc---CCCCccc--ccccccCccceeCHHHHHHHHHhcCCccccccCcccccc
Q 020096 198 EEAVCRICLDIC---EEGNTLK--MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (331)
Q Consensus 198 ee~~CRICle~~---eeg~~Li--~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~l 255 (331)
.+.+|+||-++- .+|+.++ ..|. --|=+.|. ..=..-|+..|+.||++|+-.
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~-----FPVCrpCY-EYEr~eG~q~CPqCktrYkr~ 72 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCA-----FPVCRPCY-EYERKDGNQSCPQCKTKYKRH 72 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCC-----Cccccchh-hhhhhcCCccCCccCCchhhh
Confidence 456999998752 3577776 3553 12667898 344445899999999999943
No 52
>PLN02189 cellulose synthase
Probab=78.31 E-value=1.3 Score=50.00 Aligned_cols=52 Identities=27% Similarity=0.669 Sum_probs=36.8
Q ss_pred CCCeeeEeccCc---CCCCccccccc-ccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 198 EEAVCRICLDIC---EEGNTLKMECS-CKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 198 ee~~CRICle~~---eeg~~Li~PC~-CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
...+|+||-++- ..|+.+ -.|. |. --|=+.|. ..-...|+..|+.||+.|+-
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~f-vaC~~C~---fpvCr~Cy-eyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLF-VACNECG---FPVCRPCY-EYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred cCccccccccccCcCCCCCEE-EeeccCC---Cccccchh-hhhhhcCCccCcccCCchhh
Confidence 356999998763 345555 4555 42 13778898 55556689999999999993
No 53
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.11 E-value=1.4 Score=40.71 Aligned_cols=28 Identities=32% Similarity=0.901 Sum_probs=22.1
Q ss_pred cccCCCCeeeEeccCcCCCCcc-cccccc
Q 020096 194 EIAEEEAVCRICLDICEEGNTL-KMECSC 221 (331)
Q Consensus 194 d~~eee~~CRICle~~eeg~~L-i~PC~C 221 (331)
-..++.-+|-||+++.+.|+.+ .+||-|
T Consensus 172 VL~ddkGECvICLEdL~~GdtIARLPCLC 200 (205)
T KOG0801|consen 172 VLKDDKGECVICLEDLEAGDTIARLPCLC 200 (205)
T ss_pred hhcccCCcEEEEhhhccCCCceeccceEE
Confidence 3345567899999998888765 689999
No 54
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=76.69 E-value=2.9 Score=38.12 Aligned_cols=54 Identities=26% Similarity=0.659 Sum_probs=36.8
Q ss_pred CCCeeeEeccCcCCCCccccc-------cc---ccCccceeCHHHHHHHHHhcC--------------------------
Q 020096 198 EEAVCRICLDICEEGNTLKME-------CS---CKGALRLVHEECAIRWFSTKG-------------------------- 241 (331)
Q Consensus 198 ee~~CRICle~~eeg~~Li~P-------C~---CkGslk~VH~~CL~kWl~~kg-------------------------- 241 (331)
|+..|-||++-.- |.+.+- |+ |.. .|-|..||++.-+..+
T Consensus 1 ed~~CpICme~PH--NAVLLlCSS~~kgcRpymc~T--s~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (162)
T PF07800_consen 1 EDVTCPICMEHPH--NAVLLLCSSHEKGCRPYMCDT--SYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQ 76 (162)
T ss_pred CCccCceeccCCC--ceEEEEeccccCCccccccCC--ccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccc
Confidence 4678999997532 333333 32 554 5899999999876431
Q ss_pred ---CccccccCcccccc
Q 020096 242 ---NKNCEVCGKEVQNL 255 (331)
Q Consensus 242 ---~~~CEICk~~y~~l 255 (331)
...|++|+-++.-+
T Consensus 77 ~~~~L~CPLCRG~V~GW 93 (162)
T PF07800_consen 77 EQPELACPLCRGEVKGW 93 (162)
T ss_pred ccccccCccccCceece
Confidence 35799999887754
No 55
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=76.29 E-value=2.6 Score=34.36 Aligned_cols=52 Identities=27% Similarity=0.500 Sum_probs=23.5
Q ss_pred CCCeeeEeccCc---CCCCccc--ccccccCccceeCHHHHHHHHHhcCCccccccCcccccc
Q 020096 198 EEAVCRICLDIC---EEGNTLK--MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (331)
Q Consensus 198 ee~~CRICle~~---eeg~~Li--~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~l 255 (331)
...+|.||-+.- +.|+.|+ ..|. --|=+.|.+-=++. |+..|+.|+++|.-.
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~-----fPvCr~CyEYErke-g~q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECA-----FPVCRPCYEYERKE-GNQVCPQCKTRYKRH 64 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS----------HHHHHHHHHT-S-SB-TTT--B----
T ss_pred CCcccccccCccccCCCCCEEEEEcccC-----CccchhHHHHHhhc-CcccccccCCCcccc
Confidence 467999998652 3567666 3454 24888998765553 788999999999854
No 56
>PLN02436 cellulose synthase A
Probab=75.84 E-value=1.8 Score=49.24 Aligned_cols=52 Identities=25% Similarity=0.618 Sum_probs=36.8
Q ss_pred CCCeeeEeccCc---CCCCccccccc-ccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 198 EEAVCRICLDIC---EEGNTLKMECS-CKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 198 ee~~CRICle~~---eeg~~Li~PC~-CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
...+|.||-++- .+|+.++ -|. |. --|=+.|. ..-...|+..|+.||+.|+-
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FV-ACn~C~---fpvCr~Cy-eyer~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFV-ACNECA---FPVCRPCY-EYERREGNQACPQCKTRYKR 90 (1094)
T ss_pred CCccccccccccCcCCCCCEEE-eeccCC---Cccccchh-hhhhhcCCccCcccCCchhh
Confidence 356999998762 3566665 444 31 13778898 55566689999999999994
No 57
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=75.22 E-value=2.2 Score=43.31 Aligned_cols=52 Identities=19% Similarity=0.618 Sum_probs=37.1
Q ss_pred CCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcC--CccccccCccccc
Q 020096 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKG--NKNCEVCGKEVQN 254 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg--~~~CEICk~~y~~ 254 (331)
+|++.|-.|+++-+-.+.-..||-|. | +-|---|-.++. +-.|+-|+..|.-
T Consensus 12 deed~cplcie~mditdknf~pc~cg----y--~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCG----Y--QICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cccccCcccccccccccCCcccCCcc----c--HHHHHHHHHHHhhccCCChHhhhhccc
Confidence 34556999998865444456799993 2 556666876664 5799999998864
No 58
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.47 E-value=1.7 Score=45.39 Aligned_cols=54 Identities=24% Similarity=0.601 Sum_probs=42.2
Q ss_pred CCCCCccccCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 188 MENNDEEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 188 ~e~~~ed~~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
.++..++..+....|+||+.+- ..-+.+|. |..|+.+|+..+. .|++|+....+
T Consensus 468 s~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~--------~~~~l~~~~~~~~--~~pl~~~~~~~ 521 (543)
T KOG0802|consen 468 SEATPSQLREPNDVCAICYQEM---SARITPCS--------HALCLRKWLYVQE--VCPLCHTYMKE 521 (543)
T ss_pred CCCChhhhhcccCcchHHHHHH---Hhcccccc--------chhHHHhhhhhcc--ccCCCchhhhc
Confidence 4567788889999999999765 12345665 9999999999864 89999887654
No 59
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=73.99 E-value=1.1 Score=35.52 Aligned_cols=34 Identities=24% Similarity=0.514 Sum_probs=24.1
Q ss_pred CCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHH
Q 020096 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIR 235 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~k 235 (331)
+++..|.+|...-..+.-.+.||. ..+|..|+.+
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~-----~v~H~~C~~r 109 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCG-----HVVHYSCIKR 109 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCC-----eEEecccccC
Confidence 456779999876544333467886 5899999753
No 60
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=72.97 E-value=4.6 Score=41.23 Aligned_cols=60 Identities=22% Similarity=0.506 Sum_probs=38.6
Q ss_pred CCccccCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCcccccccc
Q 020096 191 NDEEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLPV 257 (331)
Q Consensus 191 ~~ed~~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~lpv 257 (331)
..+|.+|+...|-||-+...- .-.+||.. -+-.-|..+-...-..+.|.+|+++...+-+
T Consensus 53 SaddtDEen~~C~ICA~~~TY--s~~~PC~H-----~~CH~Ca~RlRALY~~K~C~~CrTE~e~V~f 112 (493)
T COG5236 53 SADDTDEENMNCQICAGSTTY--SARYPCGH-----QICHACAVRLRALYMQKGCPLCRTETEAVVF 112 (493)
T ss_pred cccccccccceeEEecCCceE--EEeccCCc-----hHHHHHHHHHHHHHhccCCCccccccceEEE
Confidence 334555778899999765331 23689983 2333455555544456799999999876543
No 61
>PLN02400 cellulose synthase
Probab=72.71 E-value=2 Score=48.79 Aligned_cols=52 Identities=25% Similarity=0.541 Sum_probs=35.9
Q ss_pred CCCeeeEeccCc---CCCCccc--ccccccCccceeCHHHHHHHHHhcCCccccccCcccccc
Q 020096 198 EEAVCRICLDIC---EEGNTLK--MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (331)
Q Consensus 198 ee~~CRICle~~---eeg~~Li--~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~l 255 (331)
.+.+|+||-++- .+|+.++ ..|. --|=+.|.+ .=..-|+..|+.||++|+-.
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCa-----FPVCRpCYE-YERkeGnq~CPQCkTrYkR~ 91 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECA-----FPVCRPCYE-YERKDGTQCCPQCKTRYRRH 91 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCC-----Cccccchhh-eecccCCccCcccCCccccc
Confidence 456999998752 3677776 4553 126678873 33445789999999999943
No 62
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.21 E-value=2.6 Score=42.37 Aligned_cols=54 Identities=20% Similarity=0.556 Sum_probs=38.7
Q ss_pred CCCCeeeEeccCcCCCC----cc-cc-cccccCccceeCHHHHHHHHHhcC-----CccccccCcccccc
Q 020096 197 EEEAVCRICLDICEEGN----TL-KM-ECSCKGALRLVHEECAIRWFSTKG-----NKNCEVCGKEVQNL 255 (331)
Q Consensus 197 eee~~CRICle~~eeg~----~L-i~-PC~CkGslk~VH~~CL~kWl~~kg-----~~~CEICk~~y~~l 255 (331)
..+.+|-||++...+-. .+ |+ +|. +.+=..|+.+|-.... .+.|++|+..-.++
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~-----H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v 223 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCN-----HSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFV 223 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcc-----hhhhhcHhHhhhhhhccccccccCCCcccCccccc
Confidence 56789999997643211 11 33 487 3566789999997665 68999999987765
No 63
>PLN02195 cellulose synthase A
Probab=71.70 E-value=3.4 Score=46.66 Aligned_cols=50 Identities=24% Similarity=0.563 Sum_probs=35.7
Q ss_pred CCCeeeEeccCc---CCCCccc--ccccccCccceeCHHHHHHHHHhcCCccccccCcccc
Q 020096 198 EEAVCRICLDIC---EEGNTLK--MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (331)
Q Consensus 198 ee~~CRICle~~---eeg~~Li--~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~ 253 (331)
...+|+||-+.- ..|++++ ..|. --|=+.|. ..=...|+..|+.||++|+
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~-----~pvCrpCy-eyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECS-----YPLCKACL-EYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCC-----Cccccchh-hhhhhcCCccCCccCCccc
Confidence 467899998652 3567765 3553 13677898 4444558999999999998
No 64
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=70.62 E-value=3.7 Score=45.73 Aligned_cols=61 Identities=20% Similarity=0.545 Sum_probs=43.9
Q ss_pred ccCCCCeeeEeccCcCCC-CcccccccccCccceeCHHHHHHHHHhc-----CCccccccCccccccccee
Q 020096 195 IAEEEAVCRICLDICEEG-NTLKMECSCKGALRLVHEECAIRWFSTK-----GNKNCEVCGKEVQNLPVTL 259 (331)
Q Consensus 195 ~~eee~~CRICle~~eeg-~~Li~PC~CkGslk~VH~~CL~kWl~~k-----g~~~CEICk~~y~~lpv~l 259 (331)
......+|-||.+.-... ..|- |+-=.+.+|..|+.+|-... ..+.|+-|++.++.+|.+.
T Consensus 187 l~~~~yeCmIC~e~I~~t~~~WS----C~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~~~~~~y 253 (950)
T KOG1952|consen 187 LSNRKYECMICTERIKRTAPVWS----CKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSKTVPKTY 253 (950)
T ss_pred HhcCceEEEEeeeeccccCCcee----cchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhccCCccc
Confidence 335668999999864322 2342 33334689999999998764 3589999999999888754
No 65
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.97 E-value=4.4 Score=39.64 Aligned_cols=50 Identities=24% Similarity=0.503 Sum_probs=38.4
Q ss_pred CCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHH-HHHhcCCccccccCccccc
Q 020096 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIR-WFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~k-Wl~~kg~~~CEICk~~y~~ 254 (331)
+...-|-||++..+ .+.-+||. +.+=-.||.. |-..+ ...|++|++...-
T Consensus 213 ~~d~kC~lC~e~~~--~ps~t~Cg-----HlFC~~Cl~~~~t~~k-~~~CplCRak~~p 263 (271)
T COG5574 213 LADYKCFLCLEEPE--VPSCTPCG-----HLFCLSCLLISWTKKK-YEFCPLCRAKVYP 263 (271)
T ss_pred ccccceeeeecccC--Cccccccc-----chhhHHHHHHHHHhhc-cccCchhhhhccc
Confidence 45677999998643 57788997 4788899999 87764 3479999988653
No 66
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=68.03 E-value=3.1 Score=29.62 Aligned_cols=22 Identities=27% Similarity=0.890 Sum_probs=16.1
Q ss_pred eeCHHHHHHHHHhcCCcccccc
Q 020096 227 LVHEECAIRWFSTKGNKNCEVC 248 (331)
Q Consensus 227 ~VH~~CL~kWl~~kg~~~CEIC 248 (331)
-+|..|+.++++...+..|+.|
T Consensus 22 r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 22 RLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp EE-HHHHHHHTTT-SS-B-TTT
T ss_pred hHHHHHHHHHHhcCCCCCCcCC
Confidence 4999999999999877789987
No 67
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=67.35 E-value=2.6 Score=46.05 Aligned_cols=59 Identities=24% Similarity=0.401 Sum_probs=40.5
Q ss_pred CCCCeeeEeccCcCCCCc---ccccccccCccceeCHHHHHHHH---Hhc-----CCccccccCcccccc
Q 020096 197 EEEAVCRICLDICEEGNT---LKMECSCKGALRLVHEECAIRWF---STK-----GNKNCEVCGKEVQNL 255 (331)
Q Consensus 197 eee~~CRICle~~eeg~~---Li~PC~CkGslk~VH~~CL~kWl---~~k-----g~~~CEICk~~y~~l 255 (331)
..-+.|.||.|++.+.+. --|-|+=.|--+.||..|+..-= .+. +-++|--|+|.|..+
T Consensus 115 RfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~HfsKl 184 (900)
T KOG0956|consen 115 RFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFSKL 184 (900)
T ss_pred hhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHHHHh
Confidence 345899999877543221 34677766666789999987541 111 247999999999764
No 68
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.85 E-value=4.9 Score=38.90 Aligned_cols=51 Identities=24% Similarity=0.573 Sum_probs=41.5
Q ss_pred CCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhc------CCccccccCccc
Q 020096 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK------GNKNCEVCGKEV 252 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k------g~~~CEICk~~y 252 (331)
+....|+.|-....+|+...+-|- +.+|-.||..|...- ....|+-|.+++
T Consensus 48 DY~pNC~LC~t~La~gdt~RLvCy-----hlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGDTTRLVCY-----HLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCCCCCceeCCccccCcceeehhh-----hhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 455779999887778888888886 589999999998753 247999999884
No 69
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=65.47 E-value=2.4 Score=40.85 Aligned_cols=52 Identities=23% Similarity=0.317 Sum_probs=33.1
Q ss_pred CCeeeEeccCcCCCCcccccccccCcc-ceeCHHHHHHHHHhcCCccccccCcccc
Q 020096 199 EAVCRICLDICEEGNTLKMECSCKGAL-RLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (331)
Q Consensus 199 e~~CRICle~~eeg~~Li~PC~CkGsl-k~VH~~CL~kWl~~kg~~~CEICk~~y~ 253 (331)
+..=+||. ......++ .|.|.+=- .|+|..|+--=..-+|+++|+-|+..-.
T Consensus 218 e~~yC~Cn--qvsyg~Mi-~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~~~ 270 (274)
T KOG1973|consen 218 EPTYCICN--QVSYGKMI-GCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKAENK 270 (274)
T ss_pred CCEEEEec--cccccccc-ccCCCCCCcceEEEeccccccCCCCcccchhhhhhhh
Confidence 33333565 22333455 67776655 8999999654444468999999987643
No 70
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=64.29 E-value=3 Score=41.60 Aligned_cols=49 Identities=22% Similarity=0.390 Sum_probs=37.6
Q ss_pred CCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCcccccc
Q 020096 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (331)
Q Consensus 198 ee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~l 255 (331)
.-..|+||.+-.. -+++.+|. +-+-.-|+.+.|.... .|++|..++...
T Consensus 24 s~lrC~IC~~~i~--ip~~TtCg-----HtFCslCIR~hL~~qp--~CP~Cr~~~~es 72 (391)
T COG5432 24 SMLRCRICDCRIS--IPCETTCG-----HTFCSLCIRRHLGTQP--FCPVCREDPCES 72 (391)
T ss_pred hHHHhhhhhheee--cceecccc-----cchhHHHHHHHhcCCC--CCccccccHHhh
Confidence 3567999976432 36778887 3677889999998754 999999998764
No 71
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=61.97 E-value=4.9 Score=45.67 Aligned_cols=51 Identities=25% Similarity=0.626 Sum_probs=36.4
Q ss_pred CCCeeeEeccCc---CCCCccc--ccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 198 EEAVCRICLDIC---EEGNTLK--MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 198 ee~~CRICle~~---eeg~~Li--~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
...+|.||-+.- .+|+.++ ..|. --|-+.|. ..=...|+..|+.||++|+-
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~-----fpvCr~cy-eye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCG-----FPVCKPCY-EYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCC-----Cccccchh-hhhhhcCCccCCccCCchhh
Confidence 567999998652 3567776 3553 13667898 44445588999999999994
No 72
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=59.39 E-value=4.7 Score=43.17 Aligned_cols=53 Identities=21% Similarity=0.508 Sum_probs=39.8
Q ss_pred cccCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHh---cCCccccccCcccc
Q 020096 194 EIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST---KGNKNCEVCGKEVQ 253 (331)
Q Consensus 194 d~~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~---kg~~~CEICk~~y~ 253 (331)
+...++.+|-+|++..+ +.+..-|.. .+-+.|+..++.. ..+.+|+.|.-.+.
T Consensus 531 ~enk~~~~C~lc~d~ae--d~i~s~ChH-----~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 531 DENKGEVECGLCHDPAE--DYIESSCHH-----KFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred ccccCceeecccCChhh--hhHhhhhhH-----HHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 33456789999998754 467788873 5778999999854 34699999987654
No 73
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.90 E-value=7.4 Score=39.88 Aligned_cols=49 Identities=24% Similarity=0.482 Sum_probs=35.7
Q ss_pred CCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
.|+..|.||... +-+.++.||+.+ --..|+.+-+.. ++.|=.||+....
T Consensus 420 sEd~lCpICyA~--pi~Avf~PC~H~-----SC~~CI~qHlmN--~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAG--PINAVFAPCSHR-----SCYGCITQHLMN--CKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecc--cchhhccCCCCc-----hHHHHHHHHHhc--CCeeeEecceeee
Confidence 567899999865 335789999832 235566666554 5699999999875
No 74
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=57.77 E-value=9.1 Score=45.64 Aligned_cols=56 Identities=20% Similarity=0.672 Sum_probs=39.4
Q ss_pred ccCCCCeeeEeccCcCCCCc-ccccccccCccceeCHHHHHHHHHhc--------CCccccccCcccccc
Q 020096 195 IAEEEAVCRICLDICEEGNT-LKMECSCKGALRLVHEECAIRWFSTK--------GNKNCEVCGKEVQNL 255 (331)
Q Consensus 195 ~~eee~~CRICle~~eeg~~-Li~PC~CkGslk~VH~~CL~kWl~~k--------g~~~CEICk~~y~~l 255 (331)
..+.+++|-||+.+.-...+ +.+.|. +.+|.+|..+-+..+ +-..|+||+.++..+
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~C~-----HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCS-----HIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecCCc-----cchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 34567899999976433222 446666 589999987655443 347999999998754
No 75
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.49 E-value=6.3 Score=30.45 Aligned_cols=49 Identities=16% Similarity=0.483 Sum_probs=29.5
Q ss_pred CeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCcccccc
Q 020096 200 AVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (331)
Q Consensus 200 ~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~l 255 (331)
+.|.||++..- +.++.-|... ..-..|-.+-.+- ..-.|+||+.+++.+
T Consensus 8 dECTICye~pv--dsVlYtCGHM----CmCy~Cg~rl~~~-~~g~CPiCRapi~dv 56 (62)
T KOG4172|consen 8 DECTICYEHPV--DSVLYTCGHM----CMCYACGLRLKKA-LHGCCPICRAPIKDV 56 (62)
T ss_pred cceeeeccCcc--hHHHHHcchH----HhHHHHHHHHHHc-cCCcCcchhhHHHHH
Confidence 67999998643 2344444321 1235675554332 345999999988743
No 76
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=57.45 E-value=8.9 Score=38.87 Aligned_cols=35 Identities=26% Similarity=0.728 Sum_probs=27.0
Q ss_pred cccccCccceeCHHHHHHHHHhcC-----------CccccccCcccccc
Q 020096 218 ECSCKGALRLVHEECAIRWFSTKG-----------NKNCEVCGKEVQNL 255 (331)
Q Consensus 218 PC~CkGslk~VH~~CL~kWl~~kg-----------~~~CEICk~~y~~l 255 (331)
+|.|+- .-=.+|+-+||..++ +..|+.|+..|-.+
T Consensus 308 ~C~CRP---mWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCil 353 (358)
T PF10272_consen 308 QCYCRP---MWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCIL 353 (358)
T ss_pred cccccc---hHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceee
Confidence 577753 345789999998763 57999999998754
No 77
>PF12459 DUF3687: D-Ala-teichoic acid biosynthesis protein; InterPro: IPR021008 Proteins in this family are bacterial proteins of approximately 50 amino acids in length. There are two completely conserved residues (L and Y) that may be functionally important. A number of entries are annotated as D-Ala-teichoic acid biosynthesis protein; however there is no direct evidence to support this annotation.
Probab=55.68 E-value=24 Score=25.63 Aligned_cols=37 Identities=27% Similarity=0.251 Sum_probs=30.4
Q ss_pred eechhHHHHHHHHHHHHHHHHHHHHhCccccccccee
Q 020096 287 WQDFVVLVLISTICYFFFLEQILIEVGLSRIRQDKIK 323 (331)
Q Consensus 287 Wq~~~VLViis~layf~FLeqLlv~~g~~~i~~~~~~ 323 (331)
|+.-.+..+.=++-||+.|-.|+--+|+.+++++.-+
T Consensus 3 ~~~~~~~fi~~T~fYf~Ill~L~ylYgy~g~~~~~FI 39 (42)
T PF12459_consen 3 KQKPAVKFIGKTLFYFAILLALIYLYGYSGIGQGPFI 39 (42)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCee
Confidence 5555666778899999999899999999999988653
No 78
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=55.54 E-value=3.6 Score=42.52 Aligned_cols=51 Identities=25% Similarity=0.615 Sum_probs=39.8
Q ss_pred cCCCCeeeEeccCcC-CCCcc-cccccccCccceeCHHHHHHHHHhcCCccccccCcc
Q 020096 196 AEEEAVCRICLDICE-EGNTL-KMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKE 251 (331)
Q Consensus 196 ~eee~~CRICle~~e-eg~~L-i~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~ 251 (331)
.+-+-.|-.|-+... ..+.| -+||. +.+|..||...+...+.++|+-|+.-
T Consensus 362 ~e~~L~Cg~CGe~~Glk~e~LqALpCs-----HIfH~rCl~e~L~~n~~rsCP~Crkl 414 (518)
T KOG1941|consen 362 EETELYCGLCGESIGLKNERLQALPCS-----HIFHLRCLQEILENNGTRSCPNCRKL 414 (518)
T ss_pred HHHhhhhhhhhhhhcCCcccccccchh-----HHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 356788999976532 22345 48998 48999999999998899999999943
No 79
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=52.67 E-value=4.9 Score=40.92 Aligned_cols=47 Identities=23% Similarity=0.504 Sum_probs=37.0
Q ss_pred CCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 199 EAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 199 e~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
---|-||++=. .-+++.||.. -+-.-|+.+.|..+ -.|+.|..+++-
T Consensus 23 lLRC~IC~eyf--~ip~itpCsH-----tfCSlCIR~~L~~~--p~CP~C~~~~~E 69 (442)
T KOG0287|consen 23 LLRCGICFEYF--NIPMITPCSH-----TFCSLCIRKFLSYK--PQCPTCCVTVTE 69 (442)
T ss_pred HHHHhHHHHHh--cCceeccccc-----hHHHHHHHHHhccC--CCCCceecccch
Confidence 46799999743 2478999873 57788999999875 489999988763
No 80
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.36 E-value=16 Score=36.51 Aligned_cols=45 Identities=22% Similarity=0.575 Sum_probs=28.3
Q ss_pred CCCeeeEeccCcCCCCcccccccccCccceeCHHHH---HHHHHhcCCccccccCcccc
Q 020096 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECA---IRWFSTKGNKNCEVCGKEVQ 253 (331)
Q Consensus 198 ee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL---~kWl~~kg~~~CEICk~~y~ 253 (331)
..++|-||+.... -+..++|. |+-|. +-=+. .+...|.+|+.++.
T Consensus 6 ~~~eC~IC~nt~n--~Pv~l~C~--------HkFCyiCiKGsy~-ndk~~CavCR~pid 53 (324)
T KOG0824|consen 6 KKKECLICYNTGN--CPVNLYCF--------HKFCYICIKGSYK-NDKKTCAVCRFPID 53 (324)
T ss_pred cCCcceeeeccCC--cCcccccc--------chhhhhhhcchhh-cCCCCCceecCCCC
Confidence 3567999997533 25667776 55553 21111 13467999999975
No 81
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=43.50 E-value=10 Score=39.75 Aligned_cols=59 Identities=19% Similarity=0.421 Sum_probs=42.4
Q ss_pred ccCCCCeeeEeccCcC-CCCcccccccccCccceeCHHHHHHHHHhc------CCccccccCccccccc
Q 020096 195 IAEEEAVCRICLDICE-EGNTLKMECSCKGALRLVHEECAIRWFSTK------GNKNCEVCGKEVQNLP 256 (331)
Q Consensus 195 ~~eee~~CRICle~~e-eg~~Li~PC~CkGslk~VH~~CL~kWl~~k------g~~~CEICk~~y~~lp 256 (331)
......+|-.|++... .+|.++-=|+|+ .++|+.|-+--+... ..+.|.+|...-..++
T Consensus 164 ~~~~n~qc~vC~~g~~~~~NrmlqC~~C~---~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~~ 229 (464)
T KOG4323|consen 164 GHKVNLQCSVCYCGGPGAGNRMLQCDKCR---QWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKVP 229 (464)
T ss_pred cccccceeeeeecCCcCccceeeeecccc---cHHHHHhccCCCCHhhccCccceEeehhhccchhhcc
Confidence 3344455999996543 567777778885 599999976665432 3689999999877654
No 82
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=43.30 E-value=12 Score=36.52 Aligned_cols=30 Identities=33% Similarity=0.530 Sum_probs=20.2
Q ss_pred cccCccceeCHHHHHHHHHhcCCccccccCcc
Q 020096 220 SCKGALRLVHEECAIRWFSTKGNKNCEVCGKE 251 (331)
Q Consensus 220 ~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~ 251 (331)
+|+- -|||..|+--=---||.++|+-|+..
T Consensus 241 nCkr--EWFH~~CVGLk~pPKG~WYC~eCk~~ 270 (271)
T COG5034 241 NCKR--EWFHLECVGLKEPPKGKWYCPECKKA 270 (271)
T ss_pred CCch--hheeccccccCCCCCCcEeCHHhHhc
Confidence 4554 48999994322223589999999864
No 83
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=42.85 E-value=12 Score=37.75 Aligned_cols=51 Identities=20% Similarity=0.503 Sum_probs=38.4
Q ss_pred CCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCcccccc
Q 020096 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~l 255 (331)
....+|++|-. .--+...+..|-| -+=+.||.+.|.. +.+|+.|+-.+...
T Consensus 13 n~~itC~LC~G-YliDATTI~eCLH-----TFCkSCivk~l~~--~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 13 NPHITCRLCGG-YLIDATTITECLH-----TFCKSCIVKYLEE--SKYCPTCDIVIHKT 63 (331)
T ss_pred ccceehhhccc-eeecchhHHHHHH-----HHHHHHHHHHHHH--hccCCccceeccCc
Confidence 45678999954 3333466788875 6778999999998 67999999876544
No 84
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.08 E-value=23 Score=33.39 Aligned_cols=57 Identities=19% Similarity=0.478 Sum_probs=32.6
Q ss_pred CCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhc----C-----CccccccCcccc
Q 020096 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK----G-----NKNCEVCGKEVQ 253 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k----g-----~~~CEICk~~y~ 253 (331)
++...|-||+.-.-+|..--.-|.=.---+-+|+-||-.|++.- + --.|+-|..++.
T Consensus 163 d~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 163 DELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred hhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 45567889985322232111223211112679999999999642 1 137888887654
No 85
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=41.83 E-value=24 Score=30.04 Aligned_cols=37 Identities=14% Similarity=0.293 Sum_probs=17.0
Q ss_pred eechhHHHHHHHHHH---HHHHHHHHHHhCcccccccceee
Q 020096 287 WQDFVVLVLISTICY---FFFLEQILIEVGLSRIRQDKIKT 324 (331)
Q Consensus 287 Wq~~~VLViis~lay---f~FLeqLlv~~g~~~i~~~~~~~ 324 (331)
|..|+|+|++.+|.. +|+--.-..+ |+.-|.--.-|+
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~rRR~r~-G~~P~~gt~w~~ 41 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHNRRRRRR-GLQPIYGTRWMA 41 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCcCCceecC
Confidence 665555444333333 2332333333 666665554444
No 86
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=38.26 E-value=21 Score=31.95 Aligned_cols=55 Identities=20% Similarity=0.369 Sum_probs=38.0
Q ss_pred CCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 198 ee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
.-.+|-||.+...+ +.+..|=.|=|. +.----|+.-|--..-.-.|++||+.|+.
T Consensus 79 ~lYeCnIC~etS~e-e~FLKPneCCgY-~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAE-ERFLKPNECCGY-SICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccch-hhcCCcccccch-HHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 45679999986543 467778666662 22334456777666556799999999975
No 87
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=38.02 E-value=12 Score=41.96 Aligned_cols=51 Identities=25% Similarity=0.448 Sum_probs=33.9
Q ss_pred cccCCCCeeeEeccCcCCCCcccc--cccccCccceeCHHHHHHHHHhc--CCccccccC
Q 020096 194 EIAEEEAVCRICLDICEEGNTLKM--ECSCKGALRLVHEECAIRWFSTK--GNKNCEVCG 249 (331)
Q Consensus 194 d~~eee~~CRICle~~eeg~~Li~--PC~CkGslk~VH~~CL~kWl~~k--g~~~CEICk 249 (331)
+..++.--|-||.-.+-+ +.|++ .|+ ..|+|.+||+.=+... +.++|.-|-
T Consensus 210 ~~~~E~~~C~IC~~~DpE-dVLLLCDsCN----~~~YH~YCLDPdl~eiP~~eWYC~NC~ 264 (1134)
T KOG0825|consen 210 GLSQEEVKCDICTVHDPE-DVLLLCDSCN----KVYYHVYCLDPDLSESPVNEWYCTNCS 264 (1134)
T ss_pred CcccccccceeeccCChH-Hhheeecccc----cceeeccccCcccccccccceecCcch
Confidence 334566789999765333 33333 444 3689999999866443 568999995
No 88
>PF15013 CCSMST1: CCSMST1 family
Probab=37.77 E-value=24 Score=28.55 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=13.6
Q ss_pred eeeechhHH-HHHHHHHHHHHH
Q 020096 285 SAWQDFVVL-VLISTICYFFFL 305 (331)
Q Consensus 285 ~~Wq~~~VL-Viis~layf~FL 305 (331)
.-||-.+|. -++..+.|||||
T Consensus 29 PWyq~~~is~sl~~fliyFC~l 50 (77)
T PF15013_consen 29 PWYQVYPISLSLAAFLIYFCFL 50 (77)
T ss_pred cceeeehhHHHHHHHHHHHhhc
Confidence 456665543 346667799998
No 89
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=37.02 E-value=12 Score=42.86 Aligned_cols=59 Identities=34% Similarity=0.527 Sum_probs=37.2
Q ss_pred cccCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 194 EIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 194 d~~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
..-++..+|-||++.+-.....+.-| .|--.+||++|...=+...|.+.|--|-+.-+.
T Consensus 214 ~~~~~D~~C~iC~~~~~~n~n~ivfC--D~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~~ 272 (1051)
T KOG0955|consen 214 ALLEEDAVCCICLDGECQNSNVIVFC--DGCNLAVHQECYGIPFIPEGQWLCRRCLQSPQR 272 (1051)
T ss_pred cccCCCccceeecccccCCCceEEEc--CCCcchhhhhccCCCCCCCCcEeehhhccCcCc
Confidence 34467899999998754322334443 233368999998733333467888888766443
No 90
>PF01440 Gemini_AL2: Geminivirus AL2 protein; InterPro: IPR000942 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=36.35 E-value=6.1 Score=35.01 Aligned_cols=32 Identities=22% Similarity=0.724 Sum_probs=26.9
Q ss_pred cccccccccCccceeCHHHHHHHHHhcCCcccccc
Q 020096 214 TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVC 248 (331)
Q Consensus 214 ~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEIC 248 (331)
.+-++|.|. .|+|.+|-..+|.+.|...|---
T Consensus 32 RIDL~CGCS---yyihinC~~hGFTHRGthhCsS~ 63 (134)
T PF01440_consen 32 RIDLPCGCS---YYIHINCHNHGFTHRGTHHCSSS 63 (134)
T ss_pred ccccCCCCE---EEeecccCCCCcCCCcCccCCCc
Confidence 456899995 69999999999999998887633
No 91
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=36.28 E-value=16 Score=39.82 Aligned_cols=33 Identities=30% Similarity=0.692 Sum_probs=25.9
Q ss_pred ccccccccCccceeCHHHHHHHHHhc---------CCccccccC
Q 020096 215 LKMECSCKGALRLVHEECAIRWFSTK---------GNKNCEVCG 249 (331)
Q Consensus 215 Li~PC~CkGslk~VH~~CL~kWl~~k---------g~~~CEICk 249 (331)
...-|+|.| ++.|..|+..|+.+. .-+.||.|+
T Consensus 34 ~m~ac~~c~--~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~ 75 (694)
T KOG4443|consen 34 RLLACSDCG--QKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACG 75 (694)
T ss_pred cchhhhhhc--ccCCcchhhHHHhHHHhcCCcccCCceeeeecc
Confidence 345688887 689999999999875 146788888
No 92
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=33.96 E-value=17 Score=35.71 Aligned_cols=55 Identities=20% Similarity=0.349 Sum_probs=38.7
Q ss_pred CCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhc--C-----CccccccCcccc
Q 020096 199 EAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK--G-----NKNCEVCGKEVQ 253 (331)
Q Consensus 199 e~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k--g-----~~~CEICk~~y~ 253 (331)
...|.+|.++.++.+..+.-|.=.+-....|-.||..-+..- | .-.|+.|+..+.
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~ 243 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLS 243 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceee
Confidence 368999988764445566666666666689999999844322 2 358999998654
No 93
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=33.83 E-value=23 Score=39.13 Aligned_cols=53 Identities=28% Similarity=0.564 Sum_probs=34.8
Q ss_pred eeeEeccCcC-CCCcccccccccCccceeCHHHHH-------HHHHhcC-------CccccccCccccc
Q 020096 201 VCRICLDICE-EGNTLKMECSCKGALRLVHEECAI-------RWFSTKG-------NKNCEVCGKEVQN 254 (331)
Q Consensus 201 ~CRICle~~e-eg~~Li~PC~CkGslk~VH~~CL~-------kWl~~kg-------~~~CEICk~~y~~ 254 (331)
-|.+|-++.- .+|+|+. |.=.+---.||+.|.- .||-.|- ..+||+|-+++--
T Consensus 7 GCCVCSDErGWaeNPLVY-CDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGA 74 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVY-CDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGA 74 (900)
T ss_pred ceeeecCcCCCccCceee-ecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCcccc
Confidence 3888987632 4578873 3222222479999963 6885541 4799999988753
No 94
>PF04641 Rtf2: Rtf2 RING-finger
Probab=32.80 E-value=40 Score=32.10 Aligned_cols=54 Identities=20% Similarity=0.451 Sum_probs=37.2
Q ss_pred cccCCCCeeeEeccCcCCCCcc--cccccccCccceeCHHHHHHHHHhcCCccccccCcccccc
Q 020096 194 EIAEEEAVCRICLDICEEGNTL--KMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (331)
Q Consensus 194 d~~eee~~CRICle~~eeg~~L--i~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~l 255 (331)
+..+..-+|-|+..+....-.+ +.||.| .+-+.+|.+- . ....|++|+.+|...
T Consensus 108 ~~~~~~~~CPvt~~~~~~~~~fv~l~~cG~-----V~s~~alke~-k--~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 108 DNSEGRFICPVTGKEFNGKHKFVYLRPCGC-----VFSEKALKEL-K--KSKKCPVCGKPFTEE 163 (260)
T ss_pred ccCCceeECCCCCcccCCceeEEEEcCCCC-----EeeHHHHHhh-c--ccccccccCCccccC
Confidence 3345567787777654322233 579998 7888888776 2 346799999999854
No 95
>COG4640 Predicted membrane protein [Function unknown]
Probab=31.96 E-value=26 Score=36.48 Aligned_cols=57 Identities=12% Similarity=0.458 Sum_probs=28.6
Q ss_pred CccccccCcccccccceeeccccchhccccccccccccccccceeeechhHHHHHHHHHHHH
Q 020096 242 NKNCEVCGKEVQNLPVTLLRMSSSAQRDNRRNHSQQTMHSRSVSAWQDFVVLVLISTICYFF 303 (331)
Q Consensus 242 ~~~CEICk~~y~~lpv~llr~~~~~q~~nr~~~~~~~~~~~~~~~Wq~~~VLViis~layf~ 303 (331)
...|..|++++..--- +.....++--...+-.+....+..|-..++.+|+-+++|||
T Consensus 15 ~~qC~qCG~~~t~~~s-----qan~~tn~i~~trrkniskK~ii~was~a~~lIlii~~~~f 71 (465)
T COG4640 15 DVQCTQCGHKFTSRQS-----QANKSTNEIIQTRRKNISKKKIIPWASGAFILILIIILFFF 71 (465)
T ss_pred cccccccCCcCCchhh-----hhhHHHHHHHHhhccCCccceeehhHHHHHHHHHHHHHHHH
Confidence 4569999999875311 00000000000001123446778998776666555555554
No 96
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.48 E-value=3.9 Score=40.78 Aligned_cols=43 Identities=23% Similarity=0.672 Sum_probs=27.0
Q ss_pred CCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCcccc
Q 020096 199 EAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (331)
Q Consensus 199 e~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~ 253 (331)
...|+||++.. -+=+.++|... ..-.+|= +.-..|+||++.+.
T Consensus 300 ~~LC~ICmDaP--~DCvfLeCGHm----VtCt~CG------krm~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAP--RDCVFLECGHM----VTCTKCG------KRMNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCC--cceEEeecCcE----Eeehhhc------cccccCchHHHHHH
Confidence 78999999863 34578898742 2223331 11237888887654
No 97
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.62 E-value=29 Score=34.88 Aligned_cols=37 Identities=27% Similarity=0.609 Sum_probs=27.4
Q ss_pred ccccCccceeCHHHHHHHHHhc-----------CCccccccCcccccccce
Q 020096 219 CSCKGALRLVHEECAIRWFSTK-----------GNKNCEVCGKEVQNLPVT 258 (331)
Q Consensus 219 C~CkGslk~VH~~CL~kWl~~k-----------g~~~CEICk~~y~~lpv~ 258 (331)
|-|+- .--.+||.+||.-+ |+-+|+.|+..|-.+-|.
T Consensus 323 c~crp---~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv~ 370 (381)
T KOG3899|consen 323 CICRP---LWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDVH 370 (381)
T ss_pred ccccc---HHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeeee
Confidence 45543 45689999999754 468999999999865443
No 98
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=24.53 E-value=32 Score=32.64 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=18.6
Q ss_pred cceeeechhHHHHHHHHHHHHHH
Q 020096 283 SVSAWQDFVVLVLISTICYFFFL 305 (331)
Q Consensus 283 ~~~~Wq~~~VLViis~layf~FL 305 (331)
.+.-+.+.+|+|||.+++|++|+
T Consensus 14 ~iLNiaI~IV~lLIiiva~~lf~ 36 (217)
T PF07423_consen 14 KILNIAIGIVSLLIIIVAYQLFF 36 (217)
T ss_pred hhHHHHHHHHHHHHHHHhhhhee
Confidence 34556777888999999999997
No 100
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=23.23 E-value=42 Score=33.03 Aligned_cols=42 Identities=21% Similarity=0.570 Sum_probs=31.9
Q ss_pred eeEeccCcCC--CCcccccccccCccceeCHHHHHHHHHhcCCccccccCc
Q 020096 202 CRICLDICEE--GNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGK 250 (331)
Q Consensus 202 CRICle~~ee--g~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~ 250 (331)
|-||.+.... ..+-.++|. ++.|..|+..-.... .+|++|+.
T Consensus 161 cPic~e~l~~s~~~~~~~~Cg-----H~~h~~cf~e~~~~~--y~CP~C~~ 204 (276)
T KOG1940|consen 161 CPICKEYLFLSFEDAGVLKCG-----HYMHSRCFEEMICEG--YTCPICSK 204 (276)
T ss_pred CchhHHHhccccccCCccCcc-----cchHHHHHHHHhccC--CCCCcccc
Confidence 9999876432 334467888 589988888777653 89999999
No 101
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=23.14 E-value=82 Score=31.23 Aligned_cols=39 Identities=26% Similarity=0.471 Sum_probs=24.6
Q ss_pred CCCCeeeEeccCcCCCC---cccccccccCccceeCHHHHHHHHHhc
Q 020096 197 EEEAVCRICLDICEEGN---TLKMECSCKGALRLVHEECAIRWFSTK 240 (331)
Q Consensus 197 eee~~CRICle~~eeg~---~Li~PC~CkGslk~VH~~CL~kWl~~k 240 (331)
++-..|.||++..-+|- .|..-=.= -=|+.|+++|-.+.
T Consensus 28 ~tLsfChiCfEl~iegvpks~llHtkSl-----RGHrdCFEK~HlIa 69 (285)
T PF06937_consen 28 ETLSFCHICFELSIEGVPKSNLLHTKSL-----RGHRDCFEKYHLIA 69 (285)
T ss_pred cceeecceeeccccccCccccccccccc-----cchHHHHHHHHHHH
Confidence 45678999998654442 12211111 24999999998775
No 102
>PHA03023 hypothetical protein; Provisional
Probab=23.13 E-value=45 Score=28.88 Aligned_cols=37 Identities=27% Similarity=0.633 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCccccc---------ccceeeeccccC
Q 020096 294 VLISTICYFFFLEQILIEVGLSRIR---------QDKIKTTRRCVD 330 (331)
Q Consensus 294 Viis~layf~FLeqLlv~~g~~~i~---------~~~~~~~~~~~~ 330 (331)
++..|||||..+--++|.-=..+.+ -|.+.|+-+|||
T Consensus 3 ~LFlvlcyFILIfNIIvp~I~eKLr~E~~ay~~y~~~L~~~~~Cv~ 48 (112)
T PHA03023 3 FLFFMIYFFILIINIIFNKELNKLELDKKIFENAEDDLKTTISCIN 48 (112)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEC
Confidence 4566788888764444422222222 235678888987
No 103
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=20.73 E-value=43 Score=19.08 Aligned_cols=11 Identities=36% Similarity=1.174 Sum_probs=7.6
Q ss_pred cccccCccccc
Q 020096 244 NCEVCGKEVQN 254 (331)
Q Consensus 244 ~CEICk~~y~~ 254 (331)
.|++|+..|..
T Consensus 2 ~C~~C~~~~~~ 12 (24)
T PF13894_consen 2 QCPICGKSFRS 12 (24)
T ss_dssp E-SSTS-EESS
T ss_pred CCcCCCCcCCc
Confidence 69999999875
No 104
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.65 E-value=62 Score=33.39 Aligned_cols=51 Identities=24% Similarity=0.501 Sum_probs=36.4
Q ss_pred CCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCccccccc
Q 020096 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLP 256 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~lp 256 (331)
-.+-.|-||+.... ++..+||.-. +=..||++=+. ....|++|+.++.-.+
T Consensus 82 ~sef~c~vc~~~l~--~pv~tpcghs-----~c~~Cl~r~ld--~~~~cp~Cr~~l~e~~ 132 (398)
T KOG4159|consen 82 RSEFECCVCSRALY--PPVVTPCGHS-----FCLECLDRSLD--QETECPLCRDELVELP 132 (398)
T ss_pred cchhhhhhhHhhcC--CCcccccccc-----ccHHHHHHHhc--cCCCCcccccccccch
Confidence 56778999986543 4677899743 34458777333 5679999999998643
No 105
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=20.64 E-value=50 Score=24.85 Aligned_cols=43 Identities=26% Similarity=0.570 Sum_probs=23.4
Q ss_pred eeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCcccc
Q 020096 201 VCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (331)
Q Consensus 201 ~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~ 253 (331)
.|.-|+-+. ..|+ -|. -+|.-..||..-+..+ ..|+||+++..
T Consensus 4 nCKsCWf~~---k~Li-~C~----dHYLCl~CLt~ml~~s--~~C~iC~~~LP 46 (50)
T PF03854_consen 4 NCKSCWFAN---KGLI-KCS----DHYLCLNCLTLMLSRS--DRCPICGKPLP 46 (50)
T ss_dssp ---SS-S-----SSEE-E-S----S-EEEHHHHHHT-SSS--SEETTTTEE--
T ss_pred cChhhhhcC---CCee-eec----chhHHHHHHHHHhccc--cCCCcccCcCc
Confidence 466676532 2344 232 4788899998888765 49999999875
No 106
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.49 E-value=68 Score=30.01 Aligned_cols=41 Identities=24% Similarity=0.534 Sum_probs=24.7
Q ss_pred CeeeEeccCcCCCCcccccccccCccceeC-HHHHHHHHHhcCCccccccCcccc
Q 020096 200 AVCRICLDICEEGNTLKMECSCKGALRLVH-EECAIRWFSTKGNKNCEVCGKEVQ 253 (331)
Q Consensus 200 ~~CRICle~~eeg~~Li~PC~CkGslk~VH-~~CL~kWl~~kg~~~CEICk~~y~ 253 (331)
..||.|.+. +..-+.+||+. +.| ..|-. +...|++|+....
T Consensus 159 ~~Cr~C~~~--~~~VlllPCrH-----l~lC~~C~~------~~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 159 RSCRKCGER--EATVLLLPCRH-----LCLCGICDE------SLRICPICRSPKT 200 (207)
T ss_pred ccceecCcC--CceEEeecccc-----eEecccccc------cCccCCCCcChhh
Confidence 339999754 23467899983 322 23321 1457999987654
Done!