Query 020096
Match_columns 331
No_of_seqs 246 out of 877
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 11:44:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020096.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020096hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyx_A ORF K3, K3RING; zinc-bi 99.7 5.7E-19 2E-23 131.6 3.8 56 197-254 4-59 (60)
2 2d8s_A Cellular modulator of i 99.7 1.1E-17 3.9E-22 131.0 3.5 61 194-254 10-70 (80)
3 2kiz_A E3 ubiquitin-protein li 98.4 2E-07 6.7E-12 68.4 4.1 55 193-254 8-63 (69)
4 1x4j_A Ring finger protein 38; 98.3 1.9E-07 6.4E-12 69.9 2.7 52 195-253 19-71 (75)
5 2ep4_A Ring finger protein 24; 98.3 4.6E-07 1.6E-11 67.3 4.4 52 197-255 13-65 (74)
6 2l0b_A E3 ubiquitin-protein li 98.3 4.7E-07 1.6E-11 70.7 3.4 51 196-253 37-88 (91)
7 2ect_A Ring finger protein 126 98.2 4.2E-07 1.4E-11 68.2 1.4 55 193-254 9-64 (78)
8 1v87_A Deltex protein 2; ring- 98.1 1.8E-06 6E-11 69.1 4.6 52 199-255 25-95 (114)
9 2ct2_A Tripartite motif protei 98.1 2.2E-06 7.4E-11 65.0 4.7 56 194-254 10-68 (88)
10 2ecm_A Ring finger and CHY zin 98.1 8.8E-07 3E-11 61.9 2.3 50 197-253 3-54 (55)
11 1iym_A EL5; ring-H2 finger, ub 98.1 5.5E-07 1.9E-11 63.1 1.1 50 197-253 3-54 (55)
12 2ecl_A Ring-box protein 2; RNF 98.1 1.2E-06 4E-11 67.3 2.4 49 199-254 15-76 (81)
13 2ea6_A Ring finger protein 4; 98.0 2.2E-06 7.5E-11 62.0 2.0 51 196-253 12-67 (69)
14 2yur_A Retinoblastoma-binding 98.0 3.8E-06 1.3E-10 62.9 3.0 51 196-253 12-63 (74)
15 2csy_A Zinc finger protein 183 97.9 7.3E-06 2.5E-10 62.0 4.3 52 193-253 9-60 (81)
16 3dpl_R Ring-box protein 1; ubi 97.9 4.9E-06 1.7E-10 67.9 3.3 49 199-254 37-101 (106)
17 2d8t_A Dactylidin, ring finger 97.9 3.8E-06 1.3E-10 62.2 2.0 51 195-254 11-61 (71)
18 2ecn_A Ring finger protein 141 97.8 2.9E-06 9.8E-11 62.3 0.6 48 197-254 13-60 (70)
19 1chc_A Equine herpes virus-1 r 97.8 7.9E-06 2.7E-10 59.5 3.0 50 197-254 3-52 (68)
20 3ztg_A E3 ubiquitin-protein li 97.8 1.5E-05 5E-10 61.4 4.3 54 193-253 7-61 (92)
21 2ecw_A Tripartite motif-contai 97.8 1.9E-05 6.6E-10 58.9 4.6 52 196-254 16-71 (85)
22 2ysl_A Tripartite motif-contai 97.8 1.1E-05 3.8E-10 59.3 3.1 52 196-254 17-69 (73)
23 3ng2_A RNF4, snurf, ring finge 97.8 6.8E-06 2.3E-10 60.0 1.6 52 196-254 7-63 (71)
24 2ecy_A TNF receptor-associated 97.8 1.3E-05 4.3E-10 58.4 3.0 51 196-254 12-62 (66)
25 2ct0_A Non-SMC element 1 homol 97.7 1.8E-05 6.2E-10 61.2 3.1 54 195-254 11-64 (74)
26 2ecv_A Tripartite motif-contai 97.7 2.7E-05 9.2E-10 58.1 3.9 52 196-254 16-71 (85)
27 2djb_A Polycomb group ring fin 97.7 2.4E-05 8.4E-10 57.9 3.3 49 197-254 13-62 (72)
28 2ecj_A Tripartite motif-contai 97.6 3E-05 1E-09 54.4 3.3 46 196-248 12-58 (58)
29 2ysj_A Tripartite motif-contai 97.6 5E-05 1.7E-09 54.6 4.5 47 195-248 16-63 (63)
30 2xeu_A Ring finger protein 4; 97.6 1.7E-05 5.9E-10 56.4 1.9 50 198-254 2-56 (64)
31 1t1h_A Gspef-atpub14, armadill 97.6 2.8E-05 9.6E-10 58.1 3.1 52 195-254 4-55 (78)
32 4a0k_B E3 ubiquitin-protein li 97.5 1.5E-05 5.1E-10 66.5 0.5 48 200-254 49-112 (117)
33 2egp_A Tripartite motif-contai 97.4 2.1E-05 7.2E-10 58.5 0.2 51 197-254 10-65 (79)
34 4ayc_A E3 ubiquitin-protein li 97.4 1.6E-05 5.6E-10 66.2 -0.6 51 197-256 51-101 (138)
35 1e4u_A Transcriptional repress 97.4 0.00013 4.4E-09 56.3 4.1 57 197-257 9-65 (78)
36 3lrq_A E3 ubiquitin-protein li 97.3 6.1E-05 2.1E-09 59.6 1.4 51 196-254 19-70 (100)
37 1g25_A CDK-activating kinase a 97.3 7.9E-05 2.7E-09 54.0 1.8 51 198-254 2-55 (65)
38 3fl2_A E3 ubiquitin-protein li 97.2 9E-05 3.1E-09 60.3 1.4 50 197-254 50-99 (124)
39 2y43_A E3 ubiquitin-protein li 97.1 0.0001 3.4E-09 57.7 0.9 49 197-254 20-69 (99)
40 2ckl_B Ubiquitin ligase protei 97.1 0.00021 7.3E-09 60.8 2.6 50 197-254 52-102 (165)
41 1jm7_A BRCA1, breast cancer ty 97.1 0.00021 7.1E-09 56.4 2.3 50 198-254 20-70 (112)
42 4ap4_A E3 ubiquitin ligase RNF 97.0 0.00017 6E-09 57.7 1.7 54 197-257 5-63 (133)
43 2ckl_A Polycomb group ring fin 97.0 0.00021 7.3E-09 56.7 1.8 49 197-254 13-62 (108)
44 1z6u_A NP95-like ring finger p 96.9 0.00045 1.5E-08 58.9 2.6 50 197-254 76-125 (150)
45 1rmd_A RAG1; V(D)J recombinati 96.8 0.00034 1.2E-08 56.1 1.5 50 197-254 21-70 (116)
46 3hct_A TNF receptor-associated 96.8 0.00051 1.8E-08 55.5 2.6 51 196-254 15-65 (118)
47 3k1l_B Fancl; UBC, ring, RWD, 96.8 0.0004 1.4E-08 68.3 2.2 56 195-253 304-372 (381)
48 4ap4_A E3 ubiquitin ligase RNF 96.7 0.00047 1.6E-08 55.1 1.6 51 197-254 70-125 (133)
49 2vje_B MDM4 protein; proto-onc 96.7 0.00054 1.9E-08 50.2 1.7 52 194-254 2-56 (63)
50 3l11_A E3 ubiquitin-protein li 96.7 0.00018 6.1E-09 57.6 -1.2 50 197-254 13-62 (115)
51 2y1n_A E3 ubiquitin-protein li 96.6 0.001 3.5E-08 65.6 3.6 50 198-255 331-380 (389)
52 2kr4_A Ubiquitin conjugation f 96.2 0.0039 1.3E-07 48.1 4.1 50 196-254 11-60 (85)
53 1wgm_A Ubiquitin conjugation f 96.2 0.0043 1.5E-07 49.4 4.3 51 196-254 19-69 (98)
54 2kre_A Ubiquitin conjugation f 96.1 0.0072 2.4E-07 48.3 5.2 51 195-254 25-75 (100)
55 4ic3_A E3 ubiquitin-protein li 95.9 0.00091 3.1E-08 50.2 -0.8 45 197-254 22-67 (74)
56 2vje_A E3 ubiquitin-protein li 95.8 0.0035 1.2E-07 45.9 2.2 49 197-254 6-57 (64)
57 1jm7_B BARD1, BRCA1-associated 95.7 0.00098 3.4E-08 53.8 -1.5 46 197-253 20-66 (117)
58 3knv_A TNF receptor-associated 95.7 0.002 7E-08 54.3 0.3 51 195-253 27-77 (141)
59 2c2l_A CHIP, carboxy terminus 95.6 0.0057 2E-07 54.5 3.1 49 197-253 206-254 (281)
60 1bor_A Transcription factor PM 95.4 0.0023 7.9E-08 45.5 -0.3 46 197-254 4-49 (56)
61 3nw0_A Non-structural maintena 95.2 0.009 3.1E-07 54.9 3.0 51 198-255 179-230 (238)
62 3hcs_A TNF receptor-associated 95.1 0.01 3.4E-07 50.5 2.6 51 196-254 15-65 (170)
63 2ea5_A Cell growth regulator w 95.0 0.0093 3.2E-07 44.4 2.0 50 193-254 9-58 (68)
64 2f42_A STIP1 homology and U-bo 94.3 0.023 7.8E-07 50.5 2.9 50 197-254 104-153 (179)
65 2yu4_A E3 SUMO-protein ligase 94.2 0.034 1.2E-06 43.4 3.6 48 197-251 5-59 (94)
66 1wim_A KIAA0161 protein; ring 94.1 0.023 7.8E-07 44.0 2.4 51 197-252 3-62 (94)
67 2ecg_A Baculoviral IAP repeat- 94.0 0.025 8.5E-07 42.1 2.2 45 197-254 23-68 (75)
68 3htk_C E3 SUMO-protein ligase 92.6 0.073 2.5E-06 50.2 3.6 51 197-254 179-232 (267)
69 3t6p_A Baculoviral IAP repeat- 91.7 0.022 7.5E-07 55.0 -1.1 45 197-254 293-338 (345)
70 2lri_C Autoimmune regulator; Z 90.8 0.073 2.5E-06 40.0 1.1 57 192-255 5-63 (66)
71 2yho_A E3 ubiquitin-protein li 89.8 0.042 1.4E-06 41.9 -0.9 47 197-255 16-62 (79)
72 2bay_A PRE-mRNA splicing facto 88.1 0.26 8.7E-06 36.0 2.3 46 200-254 4-50 (61)
73 1weo_A Cellulose synthase, cat 81.6 1.3 4.3E-05 35.9 3.7 51 198-254 15-70 (93)
74 2l43_A N-teminal domain from h 80.0 0.36 1.2E-05 38.0 0.0 54 196-252 22-76 (88)
75 2ku3_A Bromodomain-containing 73.1 0.52 1.8E-05 35.7 -0.7 52 197-251 14-66 (71)
76 2k16_A Transcription initiatio 69.7 0.45 1.5E-05 35.6 -1.8 54 196-253 15-70 (75)
77 2l5u_A Chromodomain-helicase-D 68.0 0.98 3.4E-05 32.9 -0.2 49 196-251 8-58 (61)
78 1weu_A Inhibitor of growth fam 65.1 2.6 9.1E-05 33.5 1.8 53 193-252 30-86 (91)
79 1f62_A Transcription factor WS 62.1 1.6 5.4E-05 30.2 -0.0 47 200-250 1-49 (51)
80 3u5n_A E3 ubiquitin-protein li 61.9 0.63 2.2E-05 41.1 -2.7 49 197-252 5-55 (207)
81 1wev_A Riken cDNA 1110020M19; 61.3 0.36 1.2E-05 37.8 -3.9 55 196-253 13-74 (88)
82 2ri7_A Nucleosome-remodeling f 59.9 1.4 4.7E-05 37.5 -0.8 52 197-252 6-60 (174)
83 1wen_A Inhibitor of growth fam 59.0 1.3 4.5E-05 33.5 -1.0 53 193-252 10-66 (71)
84 1wep_A PHF8; structural genomi 55.4 5 0.00017 30.3 1.7 53 196-252 9-64 (79)
85 2ysm_A Myeloid/lymphoid or mix 53.4 1.6 5.3E-05 34.9 -1.5 39 196-238 4-42 (111)
86 2vnf_A ING 4, P29ING4, inhibit 50.8 0.67 2.3E-05 33.8 -3.7 48 196-250 7-58 (60)
87 2e6r_A Jumonji/ARID domain-con 49.9 0.82 2.8E-05 36.1 -3.6 54 194-251 11-66 (92)
88 3ql9_A Transcriptional regulat 47.9 11 0.00039 31.7 2.9 48 197-251 55-111 (129)
89 2jmi_A Protein YNG1, ING1 homo 47.8 1 3.5E-05 35.9 -3.4 51 193-250 20-75 (90)
90 2yt5_A Metal-response element- 46.4 1.3 4.4E-05 32.2 -2.8 53 196-251 3-61 (66)
91 2ko5_A Ring finger protein Z; 44.5 6.1 0.00021 32.2 0.7 46 199-254 28-73 (99)
92 1mm2_A MI2-beta; PHD, zinc fin 44.2 1.5 5.1E-05 31.9 -2.7 48 197-251 7-56 (61)
93 3v43_A Histone acetyltransfera 42.5 11 0.00036 30.3 1.8 35 198-235 4-43 (112)
94 2vpb_A Hpygo1, pygopus homolog 41.1 9.6 0.00033 28.2 1.3 34 196-233 5-40 (65)
95 4gne_A Histone-lysine N-methyl 40.8 4.3 0.00015 33.1 -0.8 48 193-247 9-58 (107)
96 3o36_A Transcription intermedi 40.8 2.4 8.1E-05 36.6 -2.5 48 198-252 3-52 (184)
97 1wem_A Death associated transc 37.4 24 0.00082 26.2 3.0 54 194-252 11-71 (76)
98 3vk6_A E3 ubiquitin-protein li 37.3 22 0.00076 29.0 3.0 35 216-256 17-51 (101)
99 2lbm_A Transcriptional regulat 37.1 15 0.00051 31.4 2.0 46 198-250 62-116 (142)
100 2xb1_A Pygopus homolog 2, B-ce 36.8 5.7 0.00019 31.9 -0.6 51 200-253 4-63 (105)
101 2lv9_A Histone-lysine N-methyl 30.8 7 0.00024 30.9 -1.0 49 198-251 27-76 (98)
102 1we9_A PHD finger family prote 30.2 12 0.00039 26.9 0.1 53 196-251 3-58 (64)
103 2kwj_A Zinc finger protein DPF 29.5 9.9 0.00034 30.6 -0.4 35 200-237 2-42 (114)
104 1x4i_A Inhibitor of growth pro 28.1 7.4 0.00025 29.2 -1.3 53 196-253 3-57 (70)
105 3kv5_D JMJC domain-containing 27.4 7.7 0.00027 39.0 -1.6 52 197-252 35-89 (488)
106 1wew_A DNA-binding family prot 27.1 43 0.0015 25.1 2.9 55 191-251 8-72 (78)
107 2yql_A PHD finger protein 21A; 26.6 3 0.0001 29.6 -3.5 47 196-249 6-54 (56)
108 1xwh_A Autoimmune regulator; P 26.4 4.4 0.00015 29.8 -2.8 48 197-251 6-55 (66)
109 2g6q_A Inhibitor of growth pro 24.5 2 7E-05 31.6 -4.9 48 196-250 8-59 (62)
110 1fp0_A KAP-1 corepressor; PHD 21.1 13 0.00046 29.3 -1.0 49 196-251 22-72 (88)
111 3ask_A E3 ubiquitin-protein li 20.9 13 0.00045 34.1 -1.3 49 199-251 174-225 (226)
No 1
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.74 E-value=5.7e-19 Score=131.64 Aligned_cols=56 Identities=34% Similarity=0.789 Sum_probs=50.5
Q ss_pred CCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
+++.+||||+++. +++|++||+|+|+++|||+.||.+|+.++++.+||+|+++|..
T Consensus 4 ~~~~~CrIC~~~~--~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEEC--SCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCC--CCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 5678999999863 4568999999999999999999999999999999999999973
No 2
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.1e-17 Score=130.95 Aligned_cols=61 Identities=28% Similarity=0.719 Sum_probs=54.4
Q ss_pred cccCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 194 EIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 194 d~~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
+.++++..|+||+++.++++.+++||+|+|++++||+.||++|+..+++.+||+|++.|..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 10 ITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CCCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 3445677899999887777789999999999999999999999999988899999999974
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.40 E-value=2e-07 Score=68.45 Aligned_cols=55 Identities=31% Similarity=0.793 Sum_probs=42.7
Q ss_pred ccccCCCCeeeEeccCcCCC-CcccccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 193 EEIAEEEAVCRICLDICEEG-NTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 193 ed~~eee~~CRICle~~eeg-~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
++..+++..|.||++....+ ....+||. +.+|..|+.+|+..+. +|++|+..+..
T Consensus 8 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~ 63 (69)
T 2kiz_A 8 GTEEDTEEKCTICLSILEEGEDVRRLPCM-----HLFHQVCVDQWLITNK--KCPICRVDIEA 63 (69)
T ss_dssp CCSTTCCCSBTTTTBCCCSSSCEEECTTS-----CEEEHHHHHHHHHHCS--BCTTTCSBSCS
T ss_pred cCcCCCCCCCeeCCccccCCCcEEEeCCC-----CHHHHHHHHHHHHcCC--CCcCcCccccC
Confidence 34445677899999876543 34568986 4799999999998854 79999998864
No 4
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.33 E-value=1.9e-07 Score=69.88 Aligned_cols=52 Identities=19% Similarity=0.635 Sum_probs=41.3
Q ss_pred ccCCCCeeeEeccCcCCCCc-ccccccccCccceeCHHHHHHHHHhcCCccccccCcccc
Q 020096 195 IAEEEAVCRICLDICEEGNT-LKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (331)
Q Consensus 195 ~~eee~~CRICle~~eeg~~-Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~ 253 (331)
..+++..|.||++....++. ..+||. +.+|..|+.+|+..+ ..|++|++.+.
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~w~~~~--~~CP~Cr~~~~ 71 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQLLRVLPCN-----HEFHAKCVDKWLKAN--RTCPICRADSG 71 (75)
T ss_dssp CSSSCCEETTTTEECCBTCEEEEETTT-----EEEETTHHHHHHHHC--SSCTTTCCCCC
T ss_pred ccCCCCCCeECCcccCCCCeEEEECCC-----CHhHHHHHHHHHHcC--CcCcCcCCcCC
Confidence 34567899999987655444 468887 489999999999874 59999998875
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=4.6e-07 Score=67.30 Aligned_cols=52 Identities=23% Similarity=0.658 Sum_probs=40.5
Q ss_pred CCCCeeeEeccCcCCCCc-ccccccccCccceeCHHHHHHHHHhcCCccccccCcccccc
Q 020096 197 EEEAVCRICLDICEEGNT-LKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (331)
Q Consensus 197 eee~~CRICle~~eeg~~-Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~l 255 (331)
+++..|.||++....+.. .++||. +.+|..|+.+|+..+. .|++|++.+..+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~-----H~f~~~Ci~~~~~~~~--~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCK-----HAFHRKCLIKWLEVRK--VCPLCNMPVLQL 65 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTT-----EEEEHHHHHHHHHHCS--BCTTTCCBCSSC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCC-----CEecHHHHHHHHHcCC--cCCCcCcccccc
Confidence 446789999988654433 356886 4799999999998754 999999988653
No 6
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.25 E-value=4.7e-07 Score=70.73 Aligned_cols=51 Identities=24% Similarity=0.642 Sum_probs=40.8
Q ss_pred cCCCCeeeEeccCcCCCCc-ccccccccCccceeCHHHHHHHHHhcCCccccccCcccc
Q 020096 196 AEEEAVCRICLDICEEGNT-LKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (331)
Q Consensus 196 ~eee~~CRICle~~eeg~~-Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~ 253 (331)
.+++..|.||++....++. ..+||. +.+|..|+.+|+..+ .+|++|++.+.
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~ 88 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCH-----HYFHKPCVSIWLQKS--GTCPVCRCMFP 88 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTT-----EEEEHHHHHHHHTTT--CBCTTTCCBSS
T ss_pred cCCCCCCcccChhhcCCCcEEecCCC-----ChHHHHHHHHHHHcC--CcCcCcCccCC
Confidence 3567889999987765554 458987 589999999999764 59999999875
No 7
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.17 E-value=4.2e-07 Score=68.16 Aligned_cols=55 Identities=25% Similarity=0.713 Sum_probs=42.3
Q ss_pred ccccCCCCeeeEeccCcCCCCc-ccccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 193 EEIAEEEAVCRICLDICEEGNT-LKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 193 ed~~eee~~CRICle~~eeg~~-Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
++..+++..|.||++....+.. .++||. +.+|..||.+|+..+ .+|++|+..+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 64 (78)
T 2ect_A 9 EEHVGSGLECPVCKEDYALGESVRQLPCN-----HLFHDSCIVPWLEQH--DSCPVCRKSLTG 64 (78)
T ss_dssp CTTSSSSCCCTTTTSCCCTTSCEEECTTS-----CEEETTTTHHHHTTT--CSCTTTCCCCCC
T ss_pred cccCCCCCCCeeCCccccCCCCEEEeCCC-----CeecHHHHHHHHHcC--CcCcCcCCccCC
Confidence 3444567889999987654433 457886 589999999999764 699999999864
No 8
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.14 E-value=1.8e-06 Score=69.11 Aligned_cols=52 Identities=21% Similarity=0.481 Sum_probs=39.0
Q ss_pred CCeeeEeccCcCCCC--------------c--ccccccccCccceeCHHHHHHHHHh---cCCccccccCcccccc
Q 020096 199 EAVCRICLDICEEGN--------------T--LKMECSCKGALRLVHEECAIRWFST---KGNKNCEVCGKEVQNL 255 (331)
Q Consensus 199 e~~CRICle~~eeg~--------------~--Li~PC~CkGslk~VH~~CL~kWl~~---kg~~~CEICk~~y~~l 255 (331)
+..|-||++...... . ..+||. +.+|..||.+|+.. +...+|++|+..|...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-----H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS-----HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSC-----CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCC-----CcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 358999998753211 1 157887 58999999999975 3467999999999753
No 9
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=2.2e-06 Score=65.03 Aligned_cols=56 Identities=18% Similarity=0.490 Sum_probs=43.9
Q ss_pred cccCCCCeeeEeccCcCCCC--cccccccccCccceeCHHHHHHHHHhc-CCccccccCccccc
Q 020096 194 EIAEEEAVCRICLDICEEGN--TLKMECSCKGALRLVHEECAIRWFSTK-GNKNCEVCGKEVQN 254 (331)
Q Consensus 194 d~~eee~~CRICle~~eeg~--~Li~PC~CkGslk~VH~~CL~kWl~~k-g~~~CEICk~~y~~ 254 (331)
+..++...|.||++...+++ +..+||. +.+|..|+.+|+..+ +...|++|+..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCG-----HTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSS-----CEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hhccCCCCCccCCccccccCCCeEECCCC-----ChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 34456788999998765433 6678886 589999999999876 45799999998764
No 10
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.13 E-value=8.8e-07 Score=61.91 Aligned_cols=50 Identities=20% Similarity=0.502 Sum_probs=39.6
Q ss_pred CCCCeeeEeccCcCCC--CcccccccccCccceeCHHHHHHHHHhcCCccccccCcccc
Q 020096 197 EEEAVCRICLDICEEG--NTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (331)
Q Consensus 197 eee~~CRICle~~eeg--~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~ 253 (331)
+++..|.||++...++ ....+||. +.+|..|+.+|+..+ ..|++|+..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCG-----HLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTS-----CEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCC-----CcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 4567899999876432 35678886 589999999999986 69999998764
No 11
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.12 E-value=5.5e-07 Score=63.11 Aligned_cols=50 Identities=26% Similarity=0.705 Sum_probs=38.8
Q ss_pred CCCCeeeEeccCcCCCC-ccccc-ccccCccceeCHHHHHHHHHhcCCccccccCcccc
Q 020096 197 EEEAVCRICLDICEEGN-TLKME-CSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (331)
Q Consensus 197 eee~~CRICle~~eeg~-~Li~P-C~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~ 253 (331)
+++..|.||++....++ ...+| |. +.+|..|+.+|+.. +.+|++|++.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~-----H~f~~~Ci~~w~~~--~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCG-----HGFHAECVDMWLGS--HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSC-----CEECTTHHHHTTTT--CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCC-----CcccHHHHHHHHHc--CCcCcCCCCEeE
Confidence 45678999998866544 44566 76 58999999999976 458999998764
No 12
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=1.2e-06 Score=67.33 Aligned_cols=49 Identities=18% Similarity=0.516 Sum_probs=35.8
Q ss_pred CCeeeEeccCcCC-----------CC-ccccc-ccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 199 EAVCRICLDICEE-----------GN-TLKME-CSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 199 e~~CRICle~~ee-----------g~-~Li~P-C~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
+..|-||++..++ ++ ...+| |. +.+|..||.+|+..+ .+|++|++.+..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~~--~~CP~CR~~~~~ 76 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECN-----HSFHNCCMSLWVKQN--NRCPLCQQDWVV 76 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTS-----CEEEHHHHHHHTTTC--CBCTTTCCBCCE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCC-----CccChHHHHHHHHhC--CCCCCcCCCcch
Confidence 4558888866432 22 33454 76 589999999999875 499999998764
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.98 E-value=2.2e-06 Score=62.05 Aligned_cols=51 Identities=24% Similarity=0.621 Sum_probs=39.3
Q ss_pred cCCCCeeeEeccCcCC----CC-cccccccccCccceeCHHHHHHHHHhcCCccccccCcccc
Q 020096 196 AEEEAVCRICLDICEE----GN-TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (331)
Q Consensus 196 ~eee~~CRICle~~ee----g~-~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~ 253 (331)
.++...|-||++...+ +. ...++|. +.+|..|+.+|+.. +..|++|+..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSS-----CEEEHHHHHHHHHH--CSSCTTTCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCC-----ChhcHHHHHHHHHc--CCCCCCCCCccC
Confidence 3567789999986532 12 2567887 58999999999987 459999999875
No 14
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.95 E-value=3.8e-06 Score=62.93 Aligned_cols=51 Identities=22% Similarity=0.527 Sum_probs=41.7
Q ss_pred cCCCCeeeEeccCcCCCCccccc-ccccCccceeCHHHHHHHHHhcCCccccccCcccc
Q 020096 196 AEEEAVCRICLDICEEGNTLKME-CSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (331)
Q Consensus 196 ~eee~~CRICle~~eeg~~Li~P-C~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~ 253 (331)
.+++..|.||++... ++..+| |. +.+|..||.+|+..++...|++|+..+.
T Consensus 12 ~~~~~~C~IC~~~~~--~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 12 IPDELLCLICKDIMT--DAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp SCGGGSCSSSCCCCT--TCEECSSSC-----CEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCCcCCChHHh--CCeEcCCCC-----CHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 355678999998654 467788 86 5899999999999877789999999754
No 15
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=7.3e-06 Score=61.97 Aligned_cols=52 Identities=25% Similarity=0.554 Sum_probs=41.6
Q ss_pred ccccCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCcccc
Q 020096 193 EEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (331)
Q Consensus 193 ed~~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~ 253 (331)
++..++...|.||++... ++.++||. +.+|..|+.+|+.. ...|++|+..+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 9 SEEEEIPFRCFICRQAFQ--NPVVTKCR-----HYFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp SSCCCCCSBCSSSCSBCC--SEEECTTS-----CEEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred cccCCCCCCCcCCCchhc--CeeEccCC-----CHhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 344456778999998653 47778987 47899999999976 569999999986
No 16
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.92 E-value=4.9e-06 Score=67.90 Aligned_cols=49 Identities=22% Similarity=0.437 Sum_probs=36.4
Q ss_pred CCeeeEeccCcCCC----------------CcccccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 199 EAVCRICLDICEEG----------------NTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 199 e~~CRICle~~eeg----------------~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
+..|-||++..++. ....++|. +.+|..||.+|+.. +.+|++|++.|.+
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKT--RQVCPLDNREWEF 101 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTS-----CEEEHHHHHHHHTT--CSBCSSSCSBCCE
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccC-----cEECHHHHHHHHHc--CCcCcCCCCccee
Confidence 35699998764321 12346787 58999999999987 4699999999753
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=3.8e-06 Score=62.21 Aligned_cols=51 Identities=22% Similarity=0.509 Sum_probs=40.6
Q ss_pred ccCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 195 IAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 195 ~~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
...++..|.||++... ++..+||. +.+|..|+.+|+... ..|++|+..+..
T Consensus 11 ~~~~~~~C~IC~~~~~--~~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 11 PSLTVPECAICLQTCV--HPVSLPCK-----HVFCYLCVKGASWLG--KRCALCRQEIPE 61 (71)
T ss_dssp SSSSCCBCSSSSSBCS--SEEEETTT-----EEEEHHHHHHCTTCS--SBCSSSCCBCCH
T ss_pred cCCCCCCCccCCcccC--CCEEccCC-----CHHHHHHHHHHHHCC--CcCcCcCchhCH
Confidence 3456678999997643 46778887 479999999999764 699999999864
No 18
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.84 E-value=2.9e-06 Score=62.31 Aligned_cols=48 Identities=25% Similarity=0.722 Sum_probs=39.1
Q ss_pred CCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
++...|.||++...+ ..+||. +.+|..|+.+|+. ....|++|++.+..
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~Cg-----H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 13 TDEEECCICMDGRAD---LILPCA-----HSFCQKCIDKWSD--RHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCSSSCCSCCS---EEETTT-----EEECHHHHHHSSC--CCSSCHHHHHCTTC
T ss_pred CCCCCCeeCCcCccC---cccCCC-----CcccHHHHHHHHH--CcCcCCCcCCcccC
Confidence 456789999987543 778987 4799999999998 46799999998763
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.84 E-value=7.9e-06 Score=59.46 Aligned_cols=50 Identities=22% Similarity=0.589 Sum_probs=39.7
Q ss_pred CCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
+++..|.||++...+ ....+||. +.+|..|+.+|+..+ ..|++|+..+..
T Consensus 3 ~~~~~C~IC~~~~~~-~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSN-YSMALPCL-----HAFCYVCITRWIRQN--PTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCS-CEEETTTT-----EEESTTHHHHHHHHS--CSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccC-CcEecCCC-----CeeHHHHHHHHHhCc--CcCcCCChhhHh
Confidence 456789999987532 23678987 479999999999865 599999999874
No 20
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.81 E-value=1.5e-05 Score=61.40 Aligned_cols=54 Identities=20% Similarity=0.515 Sum_probs=43.8
Q ss_pred ccccCCCCeeeEeccCcCCCCccccc-ccccCccceeCHHHHHHHHHhcCCccccccCcccc
Q 020096 193 EEIAEEEAVCRICLDICEEGNTLKME-CSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (331)
Q Consensus 193 ed~~eee~~CRICle~~eeg~~Li~P-C~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~ 253 (331)
.+..+++..|.||++... ++..+| |. +.++..||.+|+...+...|++|+..+.
T Consensus 7 ~~~~~~~~~C~IC~~~~~--~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMT--DAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCCCTTTEETTTTEECS--SCEECTTTC-----CEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cccCCcCCCCCCCChhhc--CceECCCCC-----CHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 344466789999997654 477888 76 4799999999999887889999999873
No 21
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.80 E-value=1.9e-05 Score=58.93 Aligned_cols=52 Identities=25% Similarity=0.631 Sum_probs=41.3
Q ss_pred cCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhc----CCccccccCccccc
Q 020096 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK----GNKNCEVCGKEVQN 254 (331)
Q Consensus 196 ~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k----g~~~CEICk~~y~~ 254 (331)
.++...|.||++... ++..+||. +.+|..|+.+|+... +...|++|+..+..
T Consensus 16 ~~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 16 IKEEVTCPICLELLK--EPVSADCN-----HSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCTTTSCTTTCSCCS--SCEECTTS-----CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CccCCCCcCCChhhC--cceeCCCC-----CHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 345678999998653 35678886 479999999999884 37899999998763
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.79 E-value=1.1e-05 Score=59.30 Aligned_cols=52 Identities=29% Similarity=0.637 Sum_probs=41.1
Q ss_pred cCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHh-cCCccccccCccccc
Q 020096 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST-KGNKNCEVCGKEVQN 254 (331)
Q Consensus 196 ~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~-kg~~~CEICk~~y~~ 254 (331)
.+++..|.||++... ++..+||. +.+|..|+.+|+.. .+...|++|+..+..
T Consensus 17 ~~~~~~C~IC~~~~~--~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 17 LQEEVICPICLDILQ--KPVTIDCG-----HNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCBCTTTCSBCS--SEEECTTC-----CEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CccCCEeccCCcccC--CeEEcCCC-----ChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 355778999998654 46677886 47999999999974 346799999998763
No 23
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.77 E-value=6.8e-06 Score=60.02 Aligned_cols=52 Identities=23% Similarity=0.616 Sum_probs=39.9
Q ss_pred cCCCCeeeEeccCcCC----CC-cccccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 196 AEEEAVCRICLDICEE----GN-TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 196 ~eee~~CRICle~~ee----g~-~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
.+++..|-||++...+ +. ...++|. +.+|..|+.+|+..+ ..|++|+..+..
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINH 63 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTS-----CEEEHHHHHHHHHHC--SBCTTTCCBCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCC-----ChHhHHHHHHHHHcC--CCCCCCCCccCh
Confidence 3557789999986431 22 2567887 489999999999875 599999998863
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.77 E-value=1.3e-05 Score=58.44 Aligned_cols=51 Identities=20% Similarity=0.486 Sum_probs=39.8
Q ss_pred cCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 196 ~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
.+++..|.||++... ++..++|. +.+|..|+.+|+. ++...|++|+..+..
T Consensus 12 ~~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLC--SPKQTECG-----HRFCESCMAALLS-SSSPKCTACQESIVK 62 (66)
T ss_dssp CCCCEECTTTCCEES--SCCCCSSS-----CCCCHHHHHHHHT-TSSCCCTTTCCCCCT
T ss_pred CCcCCCCCCCChHhc--CeeECCCC-----CHHHHHHHHHHHH-hCcCCCCCCCcCCCh
Confidence 355788999997654 35567887 4799999999997 446799999998753
No 25
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.70 E-value=1.8e-05 Score=61.22 Aligned_cols=54 Identities=19% Similarity=0.565 Sum_probs=40.4
Q ss_pred ccCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 195 IAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 195 ~~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
-++....|-||++....+..- . .|. ..+|..||.+||+.+++.+|++|++.+..
T Consensus 11 y~~~i~~C~IC~~~i~~g~~C-~--~C~---h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 11 YPDAVKICNICHSLLIQGQSC-E--TCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp CSSSSCBCSSSCCBCSSSEEC-S--SSC---CEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred ccCCCCcCcchhhHcccCCcc-C--CCC---chhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 345567899999876554311 1 443 57999999999998877899999988764
No 26
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.70 E-value=2.7e-05 Score=58.10 Aligned_cols=52 Identities=29% Similarity=0.673 Sum_probs=41.3
Q ss_pred cCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHh----cCCccccccCccccc
Q 020096 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST----KGNKNCEVCGKEVQN 254 (331)
Q Consensus 196 ~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~----kg~~~CEICk~~y~~ 254 (331)
.++...|.||++... ++..+||. +.+|..|+.+|+.. .+...|++|+..+..
T Consensus 16 ~~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 16 VKEEVTCPICLELLT--QPLSLDCG-----HSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCTTTCSCCS--SCBCCSSS-----CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred ccCCCCCCCCCcccC--CceeCCCC-----CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 345678999998754 46677886 47999999999987 347899999999873
No 27
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=2.4e-05 Score=57.93 Aligned_cols=49 Identities=22% Similarity=0.521 Sum_probs=39.0
Q ss_pred CCCCeeeEeccCcCCCCccc-ccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 197 EEEAVCRICLDICEEGNTLK-MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li-~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
+++..|.||++... ++.. .+|. +.+|..|+.+|+.. ...|++|+..+..
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 13 TPYILCSICKGYLI--DATTITECL-----HTFCKSCIVRHFYY--SNRCPKCNIVVHQ 62 (72)
T ss_dssp CGGGSCTTTSSCCS--SCEECSSSC-----CEECHHHHHHHHHH--CSSCTTTCCCCCS
T ss_pred CCCCCCCCCChHHH--CcCEECCCC-----CHHHHHHHHHHHHc--CCcCCCcCcccCc
Confidence 45678999998654 3555 4887 47999999999987 4699999999864
No 28
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.64 E-value=3e-05 Score=54.42 Aligned_cols=46 Identities=28% Similarity=0.785 Sum_probs=35.9
Q ss_pred cCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHh-cCCcccccc
Q 020096 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST-KGNKNCEVC 248 (331)
Q Consensus 196 ~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~-kg~~~CEIC 248 (331)
.+++..|.||++... ++..+||. +.+|..|+.+|+.. ++...|++|
T Consensus 12 ~~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLK--EPVIIECG-----HNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCS--SCCCCSSC-----CCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccC--ccEeCCCC-----CccCHHHHHHHHHhcCCCCCCCCC
Confidence 345678999998754 35667886 47999999999874 456799998
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.64 E-value=5e-05 Score=54.60 Aligned_cols=47 Identities=30% Similarity=0.675 Sum_probs=36.8
Q ss_pred ccCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhc-CCcccccc
Q 020096 195 IAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK-GNKNCEVC 248 (331)
Q Consensus 195 ~~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k-g~~~CEIC 248 (331)
..+++..|.||++... ++..+||. +.+|..||.+|+... +...|++|
T Consensus 16 ~~~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQ--KPVTIDCG-----HNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCS--SCEECTTS-----SEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhC--CeEEeCCC-----CcchHHHHHHHHHcCCCCCcCcCC
Confidence 3456788999998654 46677886 479999999999864 46799998
No 30
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.62 E-value=1.7e-05 Score=56.43 Aligned_cols=50 Identities=24% Similarity=0.630 Sum_probs=38.5
Q ss_pred CCCeeeEeccCcCC----CC-cccccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 198 EEAVCRICLDICEE----GN-TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 198 ee~~CRICle~~ee----g~-~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
++..|.||++...+ ++ ....+|. +.+|..|+.+|+.. +..|++|+..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCC-----CchhHHHHHHHHHc--CCCCCCCCccCCc
Confidence 45689999986432 12 2567887 47999999999987 4599999998764
No 31
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.62 E-value=2.8e-05 Score=58.08 Aligned_cols=52 Identities=15% Similarity=0.381 Sum_probs=41.4
Q ss_pred ccCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 195 IAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 195 ~~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
...++-.|.||++... ++...||. +.+++.|+.+|+.. +..+|++|+..+..
T Consensus 4 ~~~~~~~C~IC~~~~~--~Pv~~~Cg-----H~fc~~Ci~~~~~~-~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 4 EFPEYFRCPISLELMK--DPVIVSTG-----QTYERSSIQKWLDA-GHKTCPKSQETLLH 55 (78)
T ss_dssp CCSSSSSCTTTSCCCS--SEEEETTT-----EEEEHHHHHHHHTT-TCCBCTTTCCBCSS
T ss_pred CCcccCCCCCcccccc--CCEEcCCC-----CeecHHHHHHHHHH-CcCCCCCCcCCCCh
Confidence 3456789999998643 47778887 57999999999974 46799999998753
No 32
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.53 E-value=1.5e-05 Score=66.51 Aligned_cols=48 Identities=25% Similarity=0.513 Sum_probs=0.0
Q ss_pred CeeeEeccCcCC-------------C-C-c-ccccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 200 AVCRICLDICEE-------------G-N-T-LKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 200 ~~CRICle~~ee-------------g-~-~-Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
..|-||++..++ + + . +..+|. +.+|..|+.+|+.. +.+|++|+.+|.+
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~-----H~FH~~CI~~Wl~~--~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKT--RQVCPLDNREWEF 112 (117)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcC-----ceEcHHHHHHHHHc--CCcCCCCCCeeee
Confidence 479999976432 1 1 1 224676 58999999999988 4599999998753
No 33
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.44 E-value=2.1e-05 Score=58.49 Aligned_cols=51 Identities=27% Similarity=0.662 Sum_probs=40.8
Q ss_pred CCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhc-----CCccccccCccccc
Q 020096 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK-----GNKNCEVCGKEVQN 254 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k-----g~~~CEICk~~y~~ 254 (331)
+++..|.||++... ++..+||. +.+|..|+.+|+... +...|++|+..+..
T Consensus 10 ~~~~~C~IC~~~~~--~p~~l~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLT--EPLSLDCG-----HSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECS--SCCCCSSS-----CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccC--CeeECCCC-----CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 55788999998754 36667886 479999999999873 36799999999863
No 34
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.43 E-value=1.6e-05 Score=66.21 Aligned_cols=51 Identities=22% Similarity=0.644 Sum_probs=40.2
Q ss_pred CCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCccccccc
Q 020096 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLP 256 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~lp 256 (331)
+++..|.||++... ++..+||. +.+|..|+.+|+.. +..|++|+..+...+
T Consensus 51 ~~~~~C~iC~~~~~--~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 51 ENELQCIICSEYFI--EAVTLNCA-----HSFCSYCINEWMKR--KIECPICRKDIKSKT 101 (138)
T ss_dssp HHHSBCTTTCSBCS--SEEEETTS-----CEEEHHHHHHHTTT--CSBCTTTCCBCCCEE
T ss_pred cccCCCcccCcccC--CceECCCC-----CCccHHHHHHHHHc--CCcCCCCCCcCCCCC
Confidence 34567999998653 47778986 58999999999976 458999999886543
No 35
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.39 E-value=0.00013 Score=56.27 Aligned_cols=57 Identities=23% Similarity=0.465 Sum_probs=44.8
Q ss_pred CCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCcccccccc
Q 020096 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLPV 257 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~lpv 257 (331)
+++..|-||++..+..+....||.|. +.+++.|+.+|... ++..|++|+..|..-++
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CG---H~fC~~Cl~~~~~~-~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCG---YQICRFCWHRIRTD-ENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTS---CCCCHHHHHHHTTS-SCSBCTTTCCBCSSCSS
T ss_pred ccCCcCCccCccCccccccccccCCC---CCcCHHHHHHHHhc-CCCCCCCCCCccCCCch
Confidence 45678999999765455677888884 46999999999754 56899999999986543
No 36
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.30 E-value=6.1e-05 Score=59.57 Aligned_cols=51 Identities=25% Similarity=0.563 Sum_probs=41.3
Q ss_pred cCCCCeeeEeccCcCCCCccc-ccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 196 AEEEAVCRICLDICEEGNTLK-MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 196 ~eee~~CRICle~~eeg~~Li-~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
-+++..|.||++... ++.. .+|. +.+|..||.+|+..++ ..|++|+..+..
T Consensus 19 l~~~~~C~IC~~~~~--~p~~~~~Cg-----H~FC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 19 IAEVFRCFICMEKLR--DARLCPHCS-----KLCCFSCIRRWLTEQR-AQCPHCRAPLQL 70 (100)
T ss_dssp HHHHTBCTTTCSBCS--SEEECTTTC-----CEEEHHHHHHHHHHTC-SBCTTTCCBCCG
T ss_pred CCCCCCCccCCcccc--CccccCCCC-----ChhhHHHHHHHHHHCc-CCCCCCCCcCCH
Confidence 356688999998754 4666 8997 4799999999999864 699999999853
No 37
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.29 E-value=7.9e-05 Score=53.98 Aligned_cols=51 Identities=22% Similarity=0.519 Sum_probs=37.8
Q ss_pred CCCeeeEecc-CcCCCC--cccccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 198 EEAVCRICLD-ICEEGN--TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 198 ee~~CRICle-~~eeg~--~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
++..|.||++ ...+.. .+..+|. +.+|..|+.+|+.. +...|++|+..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTC-----CCEEHHHHHHHHHT-TSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCC-----CHhHHHHHHHHHHc-CCCcCCCCCCcccc
Confidence 3567999998 433211 1457887 47999999999874 45789999999863
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.20 E-value=9e-05 Score=60.28 Aligned_cols=50 Identities=22% Similarity=0.474 Sum_probs=40.1
Q ss_pred CCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
+++..|.||++... ++...||. +.+|..|+.+|+. .+...|++|+..+..
T Consensus 50 ~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVF--RPITTVCQ-----HNVCKDCLDRSFR-AQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCS--SEEECTTS-----CEEEHHHHHHHHH-TTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHc--CcEEeeCC-----CcccHHHHHHHHh-HCcCCCCCCCccCCC
Confidence 44578999998654 47778887 4799999999998 345699999999864
No 39
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.12 E-value=0.0001 Score=57.67 Aligned_cols=49 Identities=20% Similarity=0.545 Sum_probs=38.9
Q ss_pred CCCCeeeEeccCcCCCCcccc-cccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 197 EEEAVCRICLDICEEGNTLKM-ECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~-PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
+++..|.||++... ++... ||. +.+|..|+.+|+.. +..|++|+..+..
T Consensus 20 ~~~~~C~IC~~~~~--~p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 20 DDLLRCGICFEYFN--IAMIIPQCS-----HNYCSLCIRKFLSY--KTQCPTCCVTVTE 69 (99)
T ss_dssp HHHTBCTTTCSBCS--SEEECTTTC-----CEEEHHHHHHHHTT--CCBCTTTCCBCCG
T ss_pred CCCCCcccCChhhC--CcCEECCCC-----CHhhHHHHHHHHHC--CCCCCCCCCcCCh
Confidence 45678999998654 35555 887 48999999999985 4699999998864
No 40
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.08 E-value=0.00021 Score=60.78 Aligned_cols=50 Identities=36% Similarity=0.792 Sum_probs=39.1
Q ss_pred CCCCeeeEeccCcCCCCcccc-cccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 197 EEEAVCRICLDICEEGNTLKM-ECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~-PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
+++..|.||++... ++... ||. +.+|..|+.+|+.. +...|++|+..+..
T Consensus 52 ~~~~~C~IC~~~~~--~p~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDMLK--NTMTTKECL-----HRFCADCIITALRS-GNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBCS--SEEEETTTC-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCS
T ss_pred CCCCCCcccChHhh--CcCEeCCCC-----ChhHHHHHHHHHHh-CcCCCCCCCCcCCC
Confidence 34568999998754 35554 887 58999999999985 45799999999853
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.07 E-value=0.00021 Score=56.40 Aligned_cols=50 Identities=20% Similarity=0.699 Sum_probs=39.4
Q ss_pred CCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhc-CCccccccCccccc
Q 020096 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK-GNKNCEVCGKEVQN 254 (331)
Q Consensus 198 ee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k-g~~~CEICk~~y~~ 254 (331)
+...|.||++... ++..+||. +.+|..|+.+|+..+ +...|++|+..+..
T Consensus 20 ~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 20 KILECPICLELIK--EPVSTKCD-----HIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHTSCSSSCCCCS--SCCBCTTS-----CCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCCcccChhhc--CeEECCCC-----CHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 4568999998653 45667886 479999999999864 45689999998763
No 42
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.05 E-value=0.00017 Score=57.67 Aligned_cols=54 Identities=22% Similarity=0.566 Sum_probs=41.3
Q ss_pred CCCCeeeEeccCcCC----CC-cccccccccCccceeCHHHHHHHHHhcCCccccccCcccccccc
Q 020096 197 EEEAVCRICLDICEE----GN-TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLPV 257 (331)
Q Consensus 197 eee~~CRICle~~ee----g~-~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~lpv 257 (331)
.++..|-||++...+ +. ...++|. +.+|..|+.+|+..+ ..|++|+..+....+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINHKRY 63 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTC-----CEEEHHHHHHHHTTC--SBCTTTCCBCTTTCE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCC-----ChhhHHHHHHHHHhC--CCCCCCCCcCccccc
Confidence 456789999986532 22 2678887 489999999999864 499999999876543
No 43
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.00 E-value=0.00021 Score=56.72 Aligned_cols=49 Identities=22% Similarity=0.628 Sum_probs=39.6
Q ss_pred CCCCeeeEeccCcCCCCcccc-cccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 197 EEEAVCRICLDICEEGNTLKM-ECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~-PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
+++..|.||++... ++... ||. +.+|..|+.+|+..+ ..|++|+..+..
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYFI--DATTIIECL-----HSFCKTCIVRYLETS--KYCPICDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBCS--SEEEETTTC-----CEEEHHHHHHHHTSC--SBCTTTCCBSCS
T ss_pred CCcCCCccCChHHh--CcCEeCCCC-----ChhhHHHHHHHHHhC--CcCcCCCccccc
Confidence 45678999998654 46665 887 479999999999864 699999999874
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=96.85 E-value=0.00045 Score=58.91 Aligned_cols=50 Identities=22% Similarity=0.549 Sum_probs=40.3
Q ss_pred CCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
++...|.||++... ++..+||. +.++..||.+|+.. +...|++|+..+..
T Consensus 76 ~~~~~C~IC~~~~~--~pv~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 76 EQSFMCVCCQELVY--QPVTTECF-----HNVCKDCLQRSFKA-QVFSCPACRHDLGQ 125 (150)
T ss_dssp HHHTBCTTTSSBCS--SEEECTTS-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCT
T ss_pred ccCCEeecCChhhc--CCEEcCCC-----CchhHHHHHHHHHh-CCCcCCCCCccCCC
Confidence 34578999998653 47778987 47999999999985 45689999999874
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=96.82 E-value=0.00034 Score=56.10 Aligned_cols=50 Identities=20% Similarity=0.503 Sum_probs=40.1
Q ss_pred CCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
+++..|.||++... ++..++|. +.+|..|+.+|+... ...|++|+..+..
T Consensus 21 ~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 21 VKSISCQICEHILA--DPVETSCK-----HLFCRICILRCLKVM-GSYCPSCRYPCFP 70 (116)
T ss_dssp HHHTBCTTTCSBCS--SEEECTTS-----CEEEHHHHHHHHHHT-CSBCTTTCCBCCG
T ss_pred cCCCCCCCCCcHhc--CcEEcCCC-----CcccHHHHHHHHhHC-cCcCCCCCCCCCH
Confidence 45678999997653 46778886 589999999999874 4589999999764
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=96.81 E-value=0.00051 Score=55.52 Aligned_cols=51 Identities=22% Similarity=0.475 Sum_probs=40.3
Q ss_pred cCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 196 ~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
.++...|.||++... ++...+|. +.++..|+.+|+..++ ..|++|+..+..
T Consensus 15 ~~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 65 (118)
T 3hct_A 15 LESKYECPICLMALR--EAVQTPCG-----HRFCKACIIKSIRDAG-HKCPVDNEILLE 65 (118)
T ss_dssp CCGGGBCTTTCSBCS--SEEECTTS-----CEEEHHHHHHHHHHHC-SBCTTTCCBCCG
T ss_pred CCCCCCCCcCChhhc--CeEECCcC-----ChhhHHHHHHHHhhCC-CCCCCCCCCcCH
Confidence 345678999997653 46777886 5799999999998764 399999998764
No 47
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.81 E-value=0.0004 Score=68.26 Aligned_cols=56 Identities=27% Similarity=0.656 Sum_probs=40.5
Q ss_pred ccCCCCeeeEeccCcCCCCcc-ccccc---ccCccceeCHHHHHHHHHhcCC---------ccccccCcccc
Q 020096 195 IAEEEAVCRICLDICEEGNTL-KMECS---CKGALRLVHEECAIRWFSTKGN---------KNCEVCGKEVQ 253 (331)
Q Consensus 195 ~~eee~~CRICle~~eeg~~L-i~PC~---CkGslk~VH~~CL~kWl~~kg~---------~~CEICk~~y~ 253 (331)
..++...|-||++...++..+ ...|. |+ +.+|..||.+||....+ ..|+.|++++.
T Consensus 304 ~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~---h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 304 EDNEELRCNICFAYRLDGGEVPLVSCDNAKCV---LKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCC---CCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cccCCccCcccceeecCCCCCccccccCCccC---CccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 345678899999876553333 34463 54 58999999999986432 58999999875
No 48
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.71 E-value=0.00047 Score=55.15 Aligned_cols=51 Identities=24% Similarity=0.626 Sum_probs=38.4
Q ss_pred CCCCeeeEeccCcCC----CC-cccccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 197 EEEAVCRICLDICEE----GN-TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 197 eee~~CRICle~~ee----g~-~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
++...|-||++...+ +. ....+|. +.+|..|+.+|+..+ .+|++|+..+..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTS-----BEEEHHHHHHHHHHC--SBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCC-----ChhhHHHHHHHHHcC--CCCCCCCCcCCh
Confidence 446779999976432 22 2456776 589999999999874 599999998863
No 49
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=96.69 E-value=0.00054 Score=50.20 Aligned_cols=52 Identities=21% Similarity=0.321 Sum_probs=38.5
Q ss_pred cccCCCCeeeEeccCcCCCCccc--ccccccCccce-eCHHHHHHHHHhcCCccccccCccccc
Q 020096 194 EIAEEEAVCRICLDICEEGNTLK--MECSCKGALRL-VHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 194 d~~eee~~CRICle~~eeg~~Li--~PC~CkGslk~-VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
+..+....|.||++... +..+ .||.. . +-..|+.+|.... ..|++|+..+..
T Consensus 2 ~~~~~~~~C~IC~~~~~--~~~~~~~pCgH-----~~~C~~C~~~~~~~~--~~CPiCR~~i~~ 56 (63)
T 2vje_B 2 DCQNLLKPCSLCEKRPR--DGNIIHGRTGH-----LVTCFHCARRLKKAG--ASCPICKKEIQL 56 (63)
T ss_dssp -CGGGGSBCTTTSSSBS--CEEEEETTEEE-----EEECHHHHHHHHHTT--CBCTTTCCBCCE
T ss_pred CCCCcCCCCcccCCcCC--CeEEEecCCCC-----HhHHHHHHHHHHHhC--CcCCCcCchhhc
Confidence 34556778999998643 3434 49984 4 7899999998753 699999999864
No 50
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=96.66 E-value=0.00018 Score=57.65 Aligned_cols=50 Identities=20% Similarity=0.540 Sum_probs=40.1
Q ss_pred CCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
+++..|.||++... ++..+||. +.+|..|+.+|+.. +...|++|+..+..
T Consensus 13 ~~~~~C~iC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILV--EPVTLPCN-----HTLCKPCFQSTVEK-ASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCS--SCEECTTS-----CEECHHHHCCCCCT-TTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccC--ceeEcCCC-----CHHhHHHHHHHHhH-CcCCCCCCCcccCc
Confidence 45678999997653 46777887 47999999999964 35799999999864
No 51
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=96.62 E-value=0.001 Score=65.61 Aligned_cols=50 Identities=20% Similarity=0.567 Sum_probs=40.1
Q ss_pred CCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCcccccc
Q 020096 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (331)
Q Consensus 198 ee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~l 255 (331)
....|.||++... ++...||.. .+|..|+.+|+.. +...|++|+..+...
T Consensus 331 ~~~~C~ICle~~~--~pv~lpCGH-----~FC~~Ci~~wl~~-~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 331 TFQLCKICAENDK--DVKIEPCGH-----LMCTSCLTSWQES-EGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSSBCTTTSSSBC--CEEEETTCC-----EECHHHHHHHHHH-TCSBCTTTCCBCCEE
T ss_pred CCCCCCccCcCCC--CeEEeCCCC-----hhhHHHHHHHHhc-CCCCCCCCCCccCCc
Confidence 4479999997643 477899984 6799999999984 456999999998753
No 52
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=96.23 E-value=0.0039 Score=48.14 Aligned_cols=50 Identities=6% Similarity=0.103 Sum_probs=40.2
Q ss_pred cCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 196 ~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
..++-.|-||++-.. ++++.||. +.+-+.|+.+|+.. +.+|++|+..+..
T Consensus 11 ~p~~~~CpI~~~~m~--dPV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 11 APDEFRDPLMDTLMT--DPVRLPSG-----TVMDRSIILRHLLN--SPTDPFNRQMLTE 60 (85)
T ss_dssp CCTTTBCTTTCSBCS--SEEECTTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCCG
T ss_pred CchheECcccCchhc--CCeECCCC-----CEECHHHHHHHHhc--CCCCCCCcCCCCh
Confidence 356789999987643 58889975 46889999999985 4699999998763
No 53
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=96.18 E-value=0.0043 Score=49.42 Aligned_cols=51 Identities=12% Similarity=0.057 Sum_probs=40.2
Q ss_pred cCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 196 ~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
..++-.|-||++... ++++.||. | +.+-+.|+.+|+.. +.+|++|+..+..
T Consensus 19 ~p~~~~CpI~~~~m~--dPV~~~cG--~--htf~r~cI~~~l~~--~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMC--DPVVLPSS--R--VTVDRSTIARHLLS--DQTDPFNRSPLTM 69 (98)
T ss_dssp CCTTTBCTTTCSBCS--SEEECTTT--C--CEEEHHHHHHHTTT--SCBCTTTCSBCCT
T ss_pred CcHhcCCcCcccccc--CCeECCCC--C--eEECHHHHHHHHHh--CCCCCCCCCCCCh
Confidence 356789999987643 58888876 1 36889999999986 4699999998763
No 54
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=96.09 E-value=0.0072 Score=48.31 Aligned_cols=51 Identities=6% Similarity=0.095 Sum_probs=40.9
Q ss_pred ccCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 195 IAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 195 ~~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
...++-.|-||++-.. ++++.||. +.+-+.|+.+|+.. +.+|++|+..+..
T Consensus 25 ~~p~~~~CpI~~~~m~--dPV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~ 75 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMT--DPVRLPSG-----TIMDRSIILRHLLN--SPTDPFNRQTLTE 75 (100)
T ss_dssp SCSTTTBCTTTCSBCS--SEEEETTT-----EEEEHHHHHHHTTS--CSBCSSSCCBCCT
T ss_pred cCcHhhCCcCccCccc--CCeECCCC-----CEEchHHHHHHHHc--CCCCCCCCCCCCh
Confidence 3456789999987643 58899975 46889999999984 5799999998763
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=95.92 E-value=0.00091 Score=50.20 Aligned_cols=45 Identities=27% Similarity=0.603 Sum_probs=36.7
Q ss_pred CCCCeeeEeccCcCCCCcccccccccCccce-eCHHHHHHHHHhcCCccccccCccccc
Q 020096 197 EEEAVCRICLDICEEGNTLKMECSCKGALRL-VHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~PC~CkGslk~-VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
+++..|.||++.. .+++.+||.. . +...|+.+| ..|++|+..+..
T Consensus 22 ~~~~~C~iC~~~~--~~~~~~pCgH-----~~~C~~C~~~~------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 22 QEEKLCKICMDRN--IAIVFVPCGH-----LVTCKQCAEAV------DKCPMCYTVITF 67 (74)
T ss_dssp HHHTBCTTTSSSB--CCEEEETTCC-----BCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred ccCCCCCCCCCCC--CCEEEcCCCC-----hhHHHHhhhcC------ccCCCcCcCccC
Confidence 4567899999764 3577789974 5 999999999 699999999875
No 56
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=95.85 E-value=0.0035 Score=45.93 Aligned_cols=49 Identities=27% Similarity=0.415 Sum_probs=36.6
Q ss_pred CCCCeeeEeccCcCCCCcccc--cccccCccce-eCHHHHHHHHHhcCCccccccCccccc
Q 020096 197 EEEAVCRICLDICEEGNTLKM--ECSCKGALRL-VHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~--PC~CkGslk~-VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
+++..|.||++... +.... ||.. . +=..|+.+|... +..|++|+..+..
T Consensus 6 ~~~~~C~IC~~~~~--~~~~~~~pCgH-----~~~C~~C~~~~~~~--~~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPK--NGCIVHGKTGH-----LMACFTCAKKLKKR--NKPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCS--CEEEEETTEEE-----EEECHHHHHHHHHT--TCCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCCC--CEEEECCCCCC-----hhhHHHHHHHHHHc--CCcCCCcCcchhc
Confidence 34567999998643 45554 9973 4 458999999975 4589999998864
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.71 E-value=0.00098 Score=53.77 Aligned_cols=46 Identities=20% Similarity=0.503 Sum_probs=37.7
Q ss_pred CCCCeeeEeccCcCCCCcccc-cccccCccceeCHHHHHHHHHhcCCccccccCcccc
Q 020096 197 EEEAVCRICLDICEEGNTLKM-ECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~-PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~ 253 (331)
+++..|.||++... ++..+ ||. +.++..|+.+|+. ..|++|+..+.
T Consensus 20 ~~~~~C~IC~~~~~--~pv~~~~Cg-----H~fC~~Ci~~~~~----~~CP~Cr~~~~ 66 (117)
T 1jm7_B 20 EKLLRCSRCTNILR--EPVCLGGCE-----HIFCSNCVSDCIG----TGCPVCYTPAW 66 (117)
T ss_dssp HHTTSCSSSCSCCS--SCBCCCSSS-----CCBCTTTGGGGTT----TBCSSSCCBCS
T ss_pred hhCCCCCCCChHhh--CccEeCCCC-----CHHHHHHHHHHhc----CCCcCCCCcCc
Confidence 46788999998653 46666 886 5799999999997 58999999974
No 58
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=95.67 E-value=0.002 Score=54.35 Aligned_cols=51 Identities=22% Similarity=0.505 Sum_probs=39.8
Q ss_pred ccCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCcccc
Q 020096 195 IAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (331)
Q Consensus 195 ~~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~ 253 (331)
..+++-.|.||++... +++.++|. +.++..|+.+|+.. +...|++|++++.
T Consensus 27 ~l~~~~~C~IC~~~~~--~pv~~~Cg-----H~FC~~Ci~~~~~~-~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 27 KLEAKYLCSACRNVLR--RPFQAQCG-----HRYCSFCLASILSS-GPQNCAACVHEGI 77 (141)
T ss_dssp GCCGGGBCTTTCSBCS--SEEECTTS-----CEEEHHHHHHHGGG-SCEECHHHHHTTC
T ss_pred cCCcCcCCCCCChhhc--CcEECCCC-----CccCHHHHHHHHhc-CCCCCCCCCCccc
Confidence 3456788999997653 46777887 47999999999974 4569999999764
No 59
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.63 E-value=0.0057 Score=54.51 Aligned_cols=49 Identities=6% Similarity=0.013 Sum_probs=39.2
Q ss_pred CCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCcccc
Q 020096 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~ 253 (331)
.+.-.|-||++.. .++++.||. +.+-+.|+.+|+...+. +|++|+.++.
T Consensus 206 ~~~~~c~i~~~~~--~dPv~~~~g-----h~f~~~~i~~~~~~~~~-~cP~~~~~~~ 254 (281)
T 2c2l_A 206 PDYLCGKISFELM--REPCITPSG-----ITYDRKDIEEHLQRVGH-FNPVTRSPLT 254 (281)
T ss_dssp CSTTBCTTTCSBC--SSEEECSSC-----CEEETTHHHHHHHHTCS-SCTTTCCCCC
T ss_pred CcccCCcCcCCHh--cCCeECCCC-----CEECHHHHHHHHHHCCC-CCcCCCCCCc
Confidence 4567899998764 368999985 46789999999987543 4999999886
No 60
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.42 E-value=0.0023 Score=45.50 Aligned_cols=46 Identities=13% Similarity=0.267 Sum_probs=35.9
Q ss_pred CCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
+++..|.||++... ++..+||. +.++..|+.+| ...|++|++.+..
T Consensus 4 ~~~~~C~IC~~~~~--~p~~l~Cg-----H~fC~~Ci~~~-----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAK--CPKLLPCL-----HTLCSGCLEAS-----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCB--CCSCSTTS-----CCSBTTTCSSS-----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccC--CeEEcCCC-----CcccHHHHccC-----CCCCCcCCcEeec
Confidence 45678999998654 46778987 36889998874 5689999998764
No 61
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=95.23 E-value=0.009 Score=54.89 Aligned_cols=51 Identities=22% Similarity=0.635 Sum_probs=39.0
Q ss_pred CCCeeeEeccCcCCCCccccccc-ccCccceeCHHHHHHHHHhcCCccccccCcccccc
Q 020096 198 EEAVCRICLDICEEGNTLKMECS-CKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (331)
Q Consensus 198 ee~~CRICle~~eeg~~Li~PC~-CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~l 255 (331)
.-..|.||.+--..| .-|. |. ..+|..|+.+|++..++..|+.|+.....-
T Consensus 179 ~i~~C~iC~~iv~~g----~~C~~C~---~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQG----QSCETCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSC----EECSSSC---CEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCC----cccCccC---hHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 478899998765443 1232 53 489999999999988888999999987653
No 62
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=95.06 E-value=0.01 Score=50.49 Aligned_cols=51 Identities=22% Similarity=0.475 Sum_probs=39.9
Q ss_pred cCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 196 ~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
.++.-.|-||++... +++..+|. +.+...|+.+|+..++ .+|++|+..+..
T Consensus 15 ~~~~~~C~IC~~~~~--~pv~~~Cg-----H~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMALR--EAVQTPCG-----HRFCKACIIKSIRDAG-HKCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBCS--SEEECTTS-----CEEEHHHHHHHHHHHC-SBCTTTCCBCCG
T ss_pred CCCCCCCCCCChhhc--CcEECCCC-----CHHHHHHHHHHHHhCC-CCCCCCccCcch
Confidence 345678999998653 46777775 4799999999998754 499999988764
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.01 E-value=0.0093 Score=44.38 Aligned_cols=50 Identities=22% Similarity=0.447 Sum_probs=36.9
Q ss_pred ccccCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 193 EEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 193 ed~~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
|...++...|.||++.. .+.+.+||... .+-..|+.+ ...|++|+..+..
T Consensus 9 e~~~~~~~~C~IC~~~~--~~~v~~pCgH~----~~C~~C~~~------~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 9 EPSEENSKDCVVCQNGT--VNWVLLPCRHT----CLCDGCVKY------FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSCCCSSCCSSSSSSC--CCCEETTTTBC----CSCTTHHHH------CSSCTTTCCCCCC
T ss_pred cccCCCCCCCCCcCcCC--CCEEEECCCCh----hhhHHHHhc------CCCCCCCCcchhc
Confidence 34445678899999763 35778999842 277889873 3699999999875
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=94.25 E-value=0.023 Score=50.47 Aligned_cols=50 Identities=6% Similarity=0.018 Sum_probs=40.3
Q ss_pred CCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
.++-.|.||++-.. ++++.||. +.+=+.|+.+|+...+. +|++|+.++..
T Consensus 104 p~~f~CPI~~elm~--DPV~~~~G-----htfer~~I~~~l~~~~~-tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMR--EPCITPSG-----ITYDRKDIEEHLQRVGH-FDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCS--SEEECTTS-----CEEEHHHHHHHHHHTCS-BCTTTCCBCCG
T ss_pred cHhhcccCccccCC--CCeECCCC-----CEECHHHHHHHHHhCCC-CCCCCcCCCCh
Confidence 46789999987643 58889985 46889999999987654 79999998763
No 65
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.24 E-value=0.034 Score=43.42 Aligned_cols=48 Identities=17% Similarity=0.439 Sum_probs=38.1
Q ss_pred CCCCeeeEeccCcCCCCccccc-ccccCccceeCHHHHHHHHHhc----CCccccc--cCcc
Q 020096 197 EEEAVCRICLDICEEGNTLKME-CSCKGALRLVHEECAIRWFSTK----GNKNCEV--CGKE 251 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~P-C~CkGslk~VH~~CL~kWl~~k----g~~~CEI--Ck~~ 251 (331)
.++-.|-||++... ++++.| |. +.+-+.|+.+|+... +..+|++ |...
T Consensus 5 ~~~~~CPI~~~~~~--dPV~~~~cG-----h~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMK--KPVKNKVCG-----HTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCS--SEEEESSSC-----CEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhc--CCEEcCCCC-----CeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 56778999997643 588886 86 478899999999864 3579999 9855
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.11 E-value=0.023 Score=43.95 Aligned_cols=51 Identities=20% Similarity=0.529 Sum_probs=37.7
Q ss_pred CCCCeeeEeccCcCCCCccc-ccccccCccceeCHHHHHHHHHhc---C---Cccccc--cCccc
Q 020096 197 EEEAVCRICLDICEEGNTLK-MECSCKGALRLVHEECAIRWFSTK---G---NKNCEV--CGKEV 252 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li-~PC~CkGslk~VH~~CL~kWl~~k---g---~~~CEI--Ck~~y 252 (331)
.+...|-||++.....+.+. .+|.+ .+.+.|+.+|+..+ | ...|+. |+..+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH-----~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQC-----IFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTE-----EEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CCCcCCcccCcccccccceEcCCCCC-----cccHHHHHHHHHHHhhcCCcccccCccccCCCCC
Confidence 34668999998754333333 37974 89999999999764 2 469999 99884
No 67
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.96 E-value=0.025 Score=42.14 Aligned_cols=45 Identities=27% Similarity=0.603 Sum_probs=34.7
Q ss_pred CCCCeeeEeccCcCCCCcccccccccCccce-eCHHHHHHHHHhcCCccccccCccccc
Q 020096 197 EEEAVCRICLDICEEGNTLKMECSCKGALRL-VHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~PC~CkGslk~-VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
+++..|.||++.. .++..+||.. . +...|+.++ ..|++|+..+..
T Consensus 23 ~~~~~C~IC~~~~--~~~~~~pCgH-----~~~C~~C~~~~------~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRN--IAIVFVPCGH-----LVTCKQCAEAV------DKCPMCYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSC--CCBCCSSSCC-----CCBCHHHHHHC------SBCTTTCCBCCC
T ss_pred CCCCCCCcCCCCC--CCEEEecCCC-----HHHHHHHhhCC------CCCccCCceecC
Confidence 4456899999764 3577789973 5 899998642 699999999875
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=92.63 E-value=0.073 Score=50.23 Aligned_cols=51 Identities=18% Similarity=0.392 Sum_probs=40.1
Q ss_pred CCCCeeeEeccCcCCCCcccc-cccccCccceeCHHHHHHHHHhcCCccccc--cCccccc
Q 020096 197 EEEAVCRICLDICEEGNTLKM-ECSCKGALRLVHEECAIRWFSTKGNKNCEV--CGKEVQN 254 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~-PC~CkGslk~VH~~CL~kWl~~kg~~~CEI--Ck~~y~~ 254 (331)
..+..|-||++-.. +++.. .|. +-+=+.|+.+|+...+...|++ |+..+..
T Consensus 179 ~~el~CPIcl~~f~--DPVts~~CG-----HsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 179 KIELTCPITCKPYE--APLISRKCN-----HVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp BCCSBCTTTSSBCS--SEEEESSSC-----CEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred ceeeECcCccCccc--CCeeeCCCC-----CcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 56688999987643 46664 776 4688999999998777789999 9997753
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=91.74 E-value=0.022 Score=55.00 Aligned_cols=45 Identities=29% Similarity=0.746 Sum_probs=36.9
Q ss_pred CCCCeeeEeccCcCCCCcccccccccCccce-eCHHHHHHHHHhcCCccccccCccccc
Q 020096 197 EEEAVCRICLDICEEGNTLKMECSCKGALRL-VHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~PC~CkGslk~-VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
+++..|.||++... +++.+||.. . +...|+.+| ..|++|+..+..
T Consensus 293 ~~~~~C~IC~~~~~--~~v~lpCgH-----~~fC~~C~~~~------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEV--SVVFIPCGH-----LVVCQECAPSL------RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBC--CEEEETTCC-----EEECTTTGGGC------SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCC--ceEEcCCCC-----hhHhHHHHhcC------CcCCCCCCCccC
Confidence 45689999998643 577789984 5 899999998 589999999874
No 70
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=90.77 E-value=0.073 Score=40.00 Aligned_cols=57 Identities=18% Similarity=0.327 Sum_probs=38.4
Q ss_pred CccccCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHh--cCCccccccCcccccc
Q 020096 192 DEEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KGNKNCEVCGKEVQNL 255 (331)
Q Consensus 192 ~ed~~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~--kg~~~CEICk~~y~~l 255 (331)
+++.+.....|.||.+. ++ |+. |.+=-+.+|..||.-.+.. ++.+.|+.|...-.-.
T Consensus 5 ~~~~~~~~~~C~vC~~~---~~-ll~---Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p~ 63 (66)
T 2lri_C 5 GQQNLAPGARCGVCGDG---TD-VLR---CTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPA 63 (66)
T ss_dssp TTTCCCTTCCCTTTSCC---TT-CEE---CSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCCC
T ss_pred cccCCCCCCCcCCCCCC---Ce-EEE---CCCCCCceecccCCCccCcCCCCCEECccccCCCccC
Confidence 34555667789999743 33 332 2233469999999887765 4689999998765433
No 71
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=89.81 E-value=0.042 Score=41.88 Aligned_cols=47 Identities=26% Similarity=0.606 Sum_probs=35.5
Q ss_pred CCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCcccccc
Q 020096 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~l 255 (331)
+++..|.||++.. .+...+||... .+=..|+.+| ..|++|+..+...
T Consensus 16 ~~~~~C~IC~~~~--~~~v~~pCgH~----~~C~~C~~~~------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 16 KEAMLCMVCCEEE--INSTFCPCGHT----VCCESCAAQL------QSCPVCRSRVEHV 62 (79)
T ss_dssp HHHTBCTTTSSSB--CCEEEETTCBC----CBCHHHHTTC------SBCTTTCCBCCEE
T ss_pred CCCCEeEEeCccc--CcEEEECCCCH----HHHHHHHHhc------CcCCCCCchhhCe
Confidence 3456899999763 35778899841 2568999887 3999999998763
No 72
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=88.06 E-value=0.26 Score=35.98 Aligned_cols=46 Identities=9% Similarity=0.197 Sum_probs=35.1
Q ss_pred CeeeEeccCcCCCCcccc-cccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 200 AVCRICLDICEEGNTLKM-ECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 200 ~~CRICle~~eeg~~Li~-PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
-.|.||++..+ ++.+. +|. .-+=+.|+++||...+ +|+++++++..
T Consensus 4 ~~CpIs~~~m~--dPV~~~~sG-----~~yer~~I~~~l~~~~--~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPR--RPVLSPKSR-----TIFEKSLLEQYVKDTG--NDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCS--SEEEETTTT-----EEEEHHHHHHHHHHHS--BCTTTCCBCCG
T ss_pred EEecCCCCCCC--CCEEeCCCC-----cEEcHHHHHHHHHhCC--CCcCCcCCCCh
Confidence 46888887643 57777 554 4688999999998755 69999988763
No 73
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=81.61 E-value=1.3 Score=35.89 Aligned_cols=51 Identities=25% Similarity=0.487 Sum_probs=37.3
Q ss_pred CCCeeeEeccCc---CCCCccc--ccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 198 EEAVCRICLDIC---EEGNTLK--MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 198 ee~~CRICle~~---eeg~~Li--~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
...+|.||-+.- ..|+.|+ ..|. --|=+.|++-=.+ .++..|+.||++|.-
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~-----FPvCrpCyEYErk-eG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECG-----FPACRPCYEYERR-EGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSC-----CCCCHHHHHHHHH-TSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccC-----ChhhHHHHHHHHh-ccCccccccCCcccc
Confidence 458999998652 3566665 3454 2378899886655 478999999999984
No 74
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=80.01 E-value=0.36 Score=37.96 Aligned_cols=54 Identities=30% Similarity=0.495 Sum_probs=34.9
Q ss_pred cCCCCeeeEeccCcC-CCCcccccccccCccceeCHHHHHHHHHhcCCccccccCccc
Q 020096 196 AEEEAVCRICLDICE-EGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEV 252 (331)
Q Consensus 196 ~eee~~CRICle~~e-eg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y 252 (331)
.+++..|.||...+. .++.|+ -|. +=-..+|..|+.-=..-.|.+.|+.|....
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll-~CD--~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVIL-FCD--MCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEE-ECS--SSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCCcCCcCCCCCCCCCCCEE-ECC--CCCchhhcccCCCCccCCCceECccccCcc
Confidence 356788999987642 233343 232 223579999986433345789999997654
No 75
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=73.10 E-value=0.52 Score=35.74 Aligned_cols=52 Identities=31% Similarity=0.542 Sum_probs=33.3
Q ss_pred CCCCeeeEeccCc-CCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCcc
Q 020096 197 EEEAVCRICLDIC-EEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKE 251 (331)
Q Consensus 197 eee~~CRICle~~-eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~ 251 (331)
.+...|.||...+ ++++.|+ -|. +=-..+|..|+.-=..-+|.+.|+.|...
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll-~CD--~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVIL-FCD--MCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEE-ECS--SSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEE-ECC--CCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 4567899998764 2334443 222 22358999998643334578999999754
No 76
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=69.68 E-value=0.45 Score=35.65 Aligned_cols=54 Identities=15% Similarity=0.279 Sum_probs=34.0
Q ss_pred cCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhc--CCccccccCcccc
Q 020096 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK--GNKNCEVCGKEVQ 253 (331)
Q Consensus 196 ~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k--g~~~CEICk~~y~ 253 (331)
.++...|.||....+ ++.++. |.+=-.++|..|+.--.... +.+.|+.|.....
T Consensus 15 ~~~~~~C~~C~~~~~-~~~mi~---CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 15 GNQIWICPGCNKPDD-GSPMIG---CDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp SCEEECBTTTTBCCS-SCCEEE---CSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCCcCCCCCCCCCC-CCCEEE---cCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 345567999976643 334442 22333799999986443322 5789999976653
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=67.96 E-value=0.98 Score=32.92 Aligned_cols=49 Identities=24% Similarity=0.577 Sum_probs=32.1
Q ss_pred cCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHH--hcCCccccccCcc
Q 020096 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFS--TKGNKNCEVCGKE 251 (331)
Q Consensus 196 ~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~--~kg~~~CEICk~~ 251 (331)
.+++..|.+|... ++ |+. |.+=-+.+|..||..=+. -++.+.|+.|.+.
T Consensus 8 ~~~~~~C~vC~~~---g~-ll~---CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---GE-IIL---CDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC---SS-EEE---CSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC---Cc-EEE---CCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 4556789999763 33 332 223346999999876432 2468999999753
No 78
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=65.15 E-value=2.6 Score=33.51 Aligned_cols=53 Identities=23% Similarity=0.476 Sum_probs=33.6
Q ss_pred ccccCCCCeeeEeccCcCCCCcccc--cccccCccceeCHHHHHHHHHh--cCCccccccCccc
Q 020096 193 EEIAEEEAVCRICLDICEEGNTLKM--ECSCKGALRLVHEECAIRWFST--KGNKNCEVCGKEV 252 (331)
Q Consensus 193 ed~~eee~~CRICle~~eeg~~Li~--PC~CkGslk~VH~~CL~kWl~~--kg~~~CEICk~~y 252 (331)
+..+++...| ||..... | .++. -|.|.. .|+|..|+. |.. .+.+.|+.|...-
T Consensus 30 ~~d~~e~~yC-iC~~~~~-g-~MI~CD~~dC~~--~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 30 PVDPNEPTYC-LCHQVSY-G-EMIGCDNPDCSI--EWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCSCCCBCS-TTCCBCC-S-CCCCCSCSSCSC--CCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CcCCCCCcEE-ECCCCCC-C-CEeEecCCCCCC--CCEecccCC--cCcCCCCCEECcCccCcC
Confidence 3334566777 9987543 3 3442 344652 599999987 333 3679999997643
No 79
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=62.09 E-value=1.6 Score=30.24 Aligned_cols=47 Identities=23% Similarity=0.490 Sum_probs=28.4
Q ss_pred CeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHh--cCCccccccCc
Q 020096 200 AVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KGNKNCEVCGK 250 (331)
Q Consensus 200 ~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~--kg~~~CEICk~ 250 (331)
+.|.||....++++ |+ -| .+=-+.+|..||..=+.. ++.+.|+.|..
T Consensus 1 a~C~vC~~~~~~~~-ll-~C--d~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 1 ARCKVCRKKGEDDK-LI-LC--DECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCCTTTCCSSCCSC-CE-EC--TTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCC-EE-EC--CCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 36889987654433 33 22 233368999998531211 35788998864
No 80
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=61.94 E-value=0.63 Score=41.14 Aligned_cols=49 Identities=22% Similarity=0.530 Sum_probs=33.1
Q ss_pred CCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHh--cCCccccccCccc
Q 020096 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KGNKNCEVCGKEV 252 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~--kg~~~CEICk~~y 252 (331)
..+..|.+|..+ |+ |+ - |.|--+.+|..||...+.. +|.+.|+.|...-
T Consensus 5 ~~~~~C~~C~~~---g~-ll-~--Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG---GD-LL-C--CEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC---EE-EE-E--CSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC---Cc-eE-E--cCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 456779999754 22 33 2 3344478999998766543 4679999998653
No 81
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=61.33 E-value=0.36 Score=37.80 Aligned_cols=55 Identities=22% Similarity=0.461 Sum_probs=36.9
Q ss_pred cCCCCeeeEeccCcCC-CCcccccccccCccceeCHHHHHHHHH------hcCCccccccCcccc
Q 020096 196 AEEEAVCRICLDICEE-GNTLKMECSCKGALRLVHEECAIRWFS------TKGNKNCEVCGKEVQ 253 (331)
Q Consensus 196 ~eee~~CRICle~~ee-g~~Li~PC~CkGslk~VH~~CL~kWl~------~kg~~~CEICk~~y~ 253 (331)
.++...|.+|.....+ ++.|+.==.| -..+|+.|+.-=+. -.+.+.|..|.....
T Consensus 13 ~e~~~~C~vC~~~~~~~~~~ll~CD~C---~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 13 MEMGLACVVCRQMTVASGNQLVECQEC---HNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HHHCCSCSSSCCCCCCTTCCEEECSSS---CCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCCCcCCCCCCCCCCCCCceEECCCC---CCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 4567899999976432 3444432223 35899999876553 247899999987664
No 82
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=59.95 E-value=1.4 Score=37.54 Aligned_cols=52 Identities=19% Similarity=0.305 Sum_probs=33.8
Q ss_pred CCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHh---cCCccccccCccc
Q 020096 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST---KGNKNCEVCGKEV 252 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~---kg~~~CEICk~~y 252 (331)
++...| ||....+++..++.=-.|. .|+|..|+.---.. .+...|+.|...-
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~---~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQ---NWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTC---CEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCC---chhChhhcCCchhhccCccCeecCCCcchh
Confidence 566789 9987655444455433443 79999998532222 4578999998753
No 83
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=59.03 E-value=1.3 Score=33.47 Aligned_cols=53 Identities=23% Similarity=0.476 Sum_probs=33.4
Q ss_pred ccccCCCCeeeEeccCcCCCCcccc--cccccCccceeCHHHHHHHHHh--cCCccccccCccc
Q 020096 193 EEIAEEEAVCRICLDICEEGNTLKM--ECSCKGALRLVHEECAIRWFST--KGNKNCEVCGKEV 252 (331)
Q Consensus 193 ed~~eee~~CRICle~~eeg~~Li~--PC~CkGslk~VH~~CL~kWl~~--kg~~~CEICk~~y 252 (331)
+..+++...| ||..... | .++. -|.|.. .++|..|+. |.. .+.+.|+.|...-
T Consensus 10 ~~d~~~~~~C-~C~~~~~-g-~MI~CD~~~C~~--~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 10 PVDPNEPTYC-LCHQVSY-G-EMIGCDNPDCSI--EWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCCTTSCCCS-TTCCCSC-S-SEECCSCSSCSC--CCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred ccCCCCCCEE-ECCCCCC-C-CEeEeeCCCCCC--ccEecccCC--cCcCCCCCEECCCCCccc
Confidence 3334566778 8976532 3 3442 334642 599999987 433 3679999997653
No 84
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=55.39 E-value=5 Score=30.33 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=33.7
Q ss_pred cCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHh---cCCccccccCccc
Q 020096 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST---KGNKNCEVCGKEV 252 (331)
Q Consensus 196 ~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~---kg~~~CEICk~~y 252 (331)
.++...| ||....+.+..+|.=-.|. .|+|..|+.-=... -....|+.|....
T Consensus 9 ~~~~~~C-~C~~~~d~~~~MIqCd~C~---~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 9 ALVPVYC-LCRQPYNVNHFMIECGLCQ---DWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCCS-TTSCSCCSSSCEEEBTTTC---CEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred cCCccEE-EcCCccCCCCceEEcCCCC---CcEEeeecCcccccccCCCeEECCCccccc
Confidence 3456667 8987654344555432453 69999998532222 2568999998764
No 85
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=53.40 E-value=1.6 Score=34.88 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=25.3
Q ss_pred cCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHH
Q 020096 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFS 238 (331)
Q Consensus 196 ~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~ 238 (331)
..++..|.||.+.++. +.|+ -| .+=-+.+|..||..++.
T Consensus 4 ~~~~~~C~~C~~~g~~-~~ll-~C--~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDL-LDQF-FC--TTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCCSCBTTTCCCCCT-TTSE-EC--SSSCCEECTTTTTCCCC
T ss_pred CCCCCCCcCCCCCCCC-cCCe-EC--CCCCCCcChHHhCCccc
Confidence 3567889999876442 2233 22 33346899999987764
No 86
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=50.84 E-value=0.67 Score=33.84 Aligned_cols=48 Identities=23% Similarity=0.600 Sum_probs=29.5
Q ss_pred cCCCCeeeEeccCcCCCCcccc--cccccCccceeCHHHHHHHHHh--cCCccccccCc
Q 020096 196 AEEEAVCRICLDICEEGNTLKM--ECSCKGALRLVHEECAIRWFST--KGNKNCEVCGK 250 (331)
Q Consensus 196 ~eee~~CRICle~~eeg~~Li~--PC~CkGslk~VH~~CL~kWl~~--kg~~~CEICk~ 250 (331)
+++...| ||..... | .++. -|.|. ..++|..|+. |.. .+.+.|+.|..
T Consensus 7 ~~e~~~C-~C~~~~~-g-~mi~CD~cdC~--~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 7 PNEPTYC-LCHQVSY-G-EMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp --CCEET-TTTEECC-S-EEEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCCEE-ECCCcCC-C-CEEEeCCCCCC--CceEehhcCC--CCcCCCCCEECcCccC
Confidence 3456667 8986532 3 3442 34464 2599999987 433 26788988864
No 87
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.93 E-value=0.82 Score=36.10 Aligned_cols=54 Identities=20% Similarity=0.335 Sum_probs=32.8
Q ss_pred cccCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHH--HhcCCccccccCcc
Q 020096 194 EIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWF--STKGNKNCEVCGKE 251 (331)
Q Consensus 194 d~~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl--~~kg~~~CEICk~~ 251 (331)
....+...|.||....+++ .|+ -|. +=-+.+|..||..=+ .-++.+.|+.|...
T Consensus 11 ~~~~~~~~C~vC~~~~~~~-~ll-~CD--~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 11 AQFIDSYICQVCSRGDEDD-KLL-FCD--GCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCCSSSCCSGGGG-GCE-ECT--TTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred hhccCCCCCccCCCcCCCC-CEE-EcC--CCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3445567899998765432 233 232 223589999985211 12467899999765
No 88
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=47.87 E-value=11 Score=31.69 Aligned_cols=48 Identities=23% Similarity=0.475 Sum_probs=31.6
Q ss_pred CCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHH------HH---hcCCccccccCcc
Q 020096 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRW------FS---TKGNKNCEVCGKE 251 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kW------l~---~kg~~~CEICk~~ 251 (331)
..+..|+||.++ | .|+ - |.+--+.+|..||..= -. ..+.+.|.+|.-.
T Consensus 55 g~~~~C~vC~dG---G-~Ll-c--Cd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 55 GMDEQCRWCAEG---G-NLI-C--CDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SCBSSCTTTCCC---S-EEE-E--CSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCcCeecCCC---C-eeE-e--cCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 345569999753 2 343 1 2344578999999974 23 2578999999543
No 89
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=47.79 E-value=1 Score=35.89 Aligned_cols=51 Identities=24% Similarity=0.501 Sum_probs=31.5
Q ss_pred ccccCCCCeeeEeccCcCCCCccc--ccccccCccceeCHHHHHHHHHh--cCCccccc-cCc
Q 020096 193 EEIAEEEAVCRICLDICEEGNTLK--MECSCKGALRLVHEECAIRWFST--KGNKNCEV-CGK 250 (331)
Q Consensus 193 ed~~eee~~CRICle~~eeg~~Li--~PC~CkGslk~VH~~CL~kWl~~--kg~~~CEI-Ck~ 250 (331)
++.+++...| ||..... |+ ++ --|.|.. .|+|..|+. |.. .+.+.|+. |..
T Consensus 20 ~~~~~~~~yC-iC~~~~~-g~-MI~CD~c~C~~--eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 20 GNNNQEEVYC-FCRNVSY-GP-MVACDNPACPF--EWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp ----CCSCCS-TTTCCCS-SS-EECCCSSSCSC--SCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCCCCCcEE-EeCCCCC-CC-EEEecCCCCcc--ccCcCccCC--CCcCCCCCccCChhhcc
Confidence 3444566778 9986533 33 54 3466763 599999986 322 36799999 874
No 90
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=46.37 E-value=1.3 Score=32.23 Aligned_cols=53 Identities=19% Similarity=0.370 Sum_probs=33.5
Q ss_pred cCCCCeeeEeccCcC-CCCcccccccccCccceeCHHHHHHHHH-----hcCCccccccCcc
Q 020096 196 AEEEAVCRICLDICE-EGNTLKMECSCKGALRLVHEECAIRWFS-----TKGNKNCEVCGKE 251 (331)
Q Consensus 196 ~eee~~CRICle~~e-eg~~Li~PC~CkGslk~VH~~CL~kWl~-----~kg~~~CEICk~~ 251 (331)
++++..|.||..... .++.|+ -| .+=-..+|..|+.-=+. -.+.+.|..|...
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll-~C--d~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMV-IC--DKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEE-EC--SSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCEE-EC--CCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 456788999987532 223333 22 23335899999875332 3578999998654
No 91
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=44.54 E-value=6.1 Score=32.23 Aligned_cols=46 Identities=17% Similarity=0.429 Sum_probs=34.1
Q ss_pred CCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhcCCccccccCccccc
Q 020096 199 EAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (331)
Q Consensus 199 e~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~ 254 (331)
...|..|+.... .|+. |. -+|.=..||..-+..++ .|+||+++...
T Consensus 28 ~~nCKsCWf~~k---~LV~-C~----dHYLCl~CLtlmL~~Sd--rCpIC~~pLPt 73 (99)
T 2ko5_A 28 PQFCKSCWFENK---GLVE-CN----NHYLCLNCLTLLLSVSN--RCPICKMPLPT 73 (99)
T ss_dssp CCCCCSSCSCCS---SEEE-CS----SCEEEHHHHHHTCSSSS--EETTTTEECCC
T ss_pred cccChhhccccC---Ceee-ec----chhhHHHHHHHHHhhcc--CCcccCCcCCc
Confidence 457999987532 3553 33 37999999998887755 99999999763
No 92
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=44.21 E-value=1.5 Score=31.92 Aligned_cols=48 Identities=25% Similarity=0.455 Sum_probs=30.4
Q ss_pred CCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHh--cCCccccccCcc
Q 020096 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KGNKNCEVCGKE 251 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~--kg~~~CEICk~~ 251 (331)
.++..|.+|.+. |+ |+ - |.+=-+.+|..||..=+.. .+.+.|..|...
T Consensus 7 ~~~~~C~vC~~~---g~-ll-~--Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GE-LL-C--CDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCC---SS-CB-C--CSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCC---CC-EE-E--cCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 457789999753 33 32 2 2233357999998743322 367899999764
No 93
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=42.46 E-value=11 Score=30.26 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=22.0
Q ss_pred CCCeeeEeccCcC-----CCCcccccccccCccceeCHHHHHH
Q 020096 198 EEAVCRICLDICE-----EGNTLKMECSCKGALRLVHEECAIR 235 (331)
Q Consensus 198 ee~~CRICle~~e-----eg~~Li~PC~CkGslk~VH~~CL~k 235 (331)
...+|.+|+...+ .++.|+. |.+=-+.+|..||..
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~---C~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELIS---CADCGNSGHPSCLKF 43 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEE---CTTTCCEECHHHHTC
T ss_pred cCccccccCCchhhCcCCCchhceE---hhhcCCCCCCchhcC
Confidence 4578999997532 2234552 222336899999964
No 94
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=41.08 E-value=9.6 Score=28.19 Aligned_cols=34 Identities=24% Similarity=0.633 Sum_probs=21.2
Q ss_pred cCCCCeeeEeccCcCCCCcccccc--cccCccceeCHHHH
Q 020096 196 AEEEAVCRICLDICEEGNTLKMEC--SCKGALRLVHEECA 233 (331)
Q Consensus 196 ~eee~~CRICle~~eeg~~Li~PC--~CkGslk~VH~~CL 233 (331)
++....|-+|.....++..++ -| .|+ .|+|..|+
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI-~CD~~C~---~WfH~~Cv 40 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAI-LCEASCQ---KWFHRICT 40 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEE-EBTTTTC---CEEEHHHH
T ss_pred CCCcCcCccCCCccCCCCCeE-ecccCcc---ccCchhcc
Confidence 456778999998765444343 45 354 69999996
No 95
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=40.80 E-value=4.3 Score=33.14 Aligned_cols=48 Identities=27% Similarity=0.410 Sum_probs=27.8
Q ss_pred ccccCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHh--cCCccccc
Q 020096 193 EEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KGNKNCEV 247 (331)
Q Consensus 193 ed~~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~--kg~~~CEI 247 (331)
+...+++..|.+|.+. | .| .-|..++--+.+|..||. |.. +|.+.|+-
T Consensus 9 ~~~~~~~~~C~~C~~~---G-~l-l~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~ 58 (107)
T 4gne_A 9 EPKQMHEDYCFQCGDG---G-EL-VMCDKKDCPKAYHLLCLN--LTQPPYGKWECPW 58 (107)
T ss_dssp -CCCSSCSSCTTTCCC---S-EE-EECCSTTCCCEECTGGGT--CSSCCSSCCCCGG
T ss_pred CCcCCCCCCCCcCCCC---C-cE-eEECCCCCCcccccccCc--CCcCCCCCEECCC
Confidence 3344567789999742 3 33 356522334699999997 433 34555553
No 96
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=40.76 E-value=2.4 Score=36.62 Aligned_cols=48 Identities=23% Similarity=0.562 Sum_probs=32.5
Q ss_pred CCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHh--cCCccccccCccc
Q 020096 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KGNKNCEVCGKEV 252 (331)
Q Consensus 198 ee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~--kg~~~CEICk~~y 252 (331)
++..|.+|..+ |+ |+ - |.+--+.+|..|+..-+.. +|.+.|+.|...-
T Consensus 3 ~~~~C~~C~~~---g~-ll-~--Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LL-C--CEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SS-CE-E--CSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---Ce-ee-e--cCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 45779999754 33 32 2 3334468999998665543 4679999998653
No 97
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=37.38 E-value=24 Score=26.17 Aligned_cols=54 Identities=15% Similarity=0.236 Sum_probs=32.6
Q ss_pred cccCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHH-------hcCCccccccCccc
Q 020096 194 EIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFS-------TKGNKNCEVCGKEV 252 (331)
Q Consensus 194 d~~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~-------~kg~~~CEICk~~y 252 (331)
....+...| ||..... +..+|.==.|. .|+|..|+.-=.. ......|+.|....
T Consensus 11 ~~d~~~~~C-~C~~~~~-~~~MI~Cd~C~---~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 11 VYDPNALYC-ICRQPHN-NRFMICCDRCE---EWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp SCCTTCCCS-TTCCCCC-SSCEEECSSSC---CEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred ccCCCCCEE-ECCCccC-CCCEEEeCCCC---CcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 334446677 8876644 33455322443 6999999842211 23578999997654
No 98
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=37.32 E-value=22 Score=29.00 Aligned_cols=35 Identities=26% Similarity=0.525 Sum_probs=28.6
Q ss_pred cccccccCccceeCHHHHHHHHHhcCCccccccCccccccc
Q 020096 216 KMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLP 256 (331)
Q Consensus 216 i~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~~lp 256 (331)
..||+ +.+=..|+..|-+.+ .++|+.|+.++..+-
T Consensus 17 mIPCk-----HvFCydCa~~~~~~~-~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 17 MIPCK-----HVFCYDCAILHEKKG-DKMCPGCSDPVQRIE 51 (101)
T ss_dssp EETTC-----CEEEHHHHHHHHHTT-CCBCTTTCCBCSEEE
T ss_pred ecccc-----ccHHHHHHHHHHhcc-CCCCcCcCCeeeeeE
Confidence 45998 478899999998753 579999999998764
No 99
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=37.11 E-value=15 Score=31.43 Aligned_cols=46 Identities=24% Similarity=0.525 Sum_probs=31.1
Q ss_pred CCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHH---------hcCCccccccCc
Q 020096 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFS---------TKGNKNCEVCGK 250 (331)
Q Consensus 198 ee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~---------~kg~~~CEICk~ 250 (331)
.+..|++|.+. |+ |+ -| .+=-+.+|..||..=+. ..+.+.|.+|..
T Consensus 62 ~~d~C~vC~~G---G~-Ll-cC--D~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEG---GN-LI-CC--DFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCC---SS-EE-EC--SSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCC---Cc-EE-eC--CCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 45789999754 33 33 12 23346899999996552 357899999974
No 100
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=36.78 E-value=5.7 Score=31.92 Aligned_cols=51 Identities=20% Similarity=0.366 Sum_probs=33.7
Q ss_pred CeeeEeccCcCCCCcccccc-cccCccceeCHHHHHHHH----H----hcCCccccccCcccc
Q 020096 200 AVCRICLDICEEGNTLKMEC-SCKGALRLVHEECAIRWF----S----TKGNKNCEVCGKEVQ 253 (331)
Q Consensus 200 ~~CRICle~~eeg~~Li~PC-~CkGslk~VH~~CL~kWl----~----~kg~~~CEICk~~y~ 253 (331)
..|.||.....++..++.=| .|+ .|+|..|+.-=- . ..+...|+.|...-.
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~---~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQ---KWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTC---CEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcc---cccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 46999998754444566555 685 599999964111 0 114689999987643
No 101
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=30.80 E-value=7 Score=30.90 Aligned_cols=49 Identities=20% Similarity=0.298 Sum_probs=28.1
Q ss_pred CCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHH-HhcCCccccccCcc
Q 020096 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWF-STKGNKNCEVCGKE 251 (331)
Q Consensus 198 ee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl-~~kg~~~CEICk~~ 251 (331)
+...| ||....+.| .++.==.| -.++|..|+.-=. .....+.|+.|+..
T Consensus 27 d~vrC-iC~~~~~~~-~mi~Cd~C---~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDG-YMICCDKC---SVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CBCCC-TTSCCSCSS-CEEEBTTT---CBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CCEEe-ECCCccCCC-cEEEcCCC---CCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 33457 786554433 45532233 3699999975211 11236899999743
No 102
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=30.16 E-value=12 Score=26.91 Aligned_cols=53 Identities=13% Similarity=0.236 Sum_probs=33.1
Q ss_pred cCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHh---cCCccccccCcc
Q 020096 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST---KGNKNCEVCGKE 251 (331)
Q Consensus 196 ~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~---kg~~~CEICk~~ 251 (331)
++++..|.||....+++..+|.==.| -.|+|..|+.--... -....|+.|...
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C---~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLC---EMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSS---CCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCC---CCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 35677899998776544445531133 369999997543221 145788888654
No 103
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=29.46 E-value=9.9 Score=30.61 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=21.3
Q ss_pred CeeeEeccCcC------CCCcccccccccCccceeCHHHHHHHH
Q 020096 200 AVCRICLDICE------EGNTLKMECSCKGALRLVHEECAIRWF 237 (331)
Q Consensus 200 ~~CRICle~~e------eg~~Li~PC~CkGslk~VH~~CL~kWl 237 (331)
..|.||+.... +++.|+. |. +=-+.+|..||..+.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~-C~--~C~~~~H~~Cl~~~~ 42 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVS-CA--DCGRSGHPTCLQFTL 42 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEE-CS--SSCCEECTTTTTCCH
T ss_pred CcCccCCCCccccccCCCCCCCeE-eC--CCCCccchhhCCChh
Confidence 46999987541 1234552 22 223589999998664
No 104
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.06 E-value=7.4 Score=29.18 Aligned_cols=53 Identities=21% Similarity=0.409 Sum_probs=31.8
Q ss_pred cCCCCeeeEeccCcCCCCccc--ccccccCccceeCHHHHHHHHHhcCCccccccCcccc
Q 020096 196 AEEEAVCRICLDICEEGNTLK--MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (331)
Q Consensus 196 ~eee~~CRICle~~eeg~~Li--~PC~CkGslk~VH~~CL~kWl~~kg~~~CEICk~~y~ 253 (331)
+++...| ||.... .| .+| --|.|.. .++|..|+.-=-...+.+.|+.|.....
T Consensus 3 ~~~~~yC-~C~~~~-~g-~MI~CD~cdC~~--~WfH~~Cvgl~~~p~~~w~Cp~C~~~~~ 57 (70)
T 1x4i_A 3 SGSSGYC-ICNQVS-YG-EMVGCDNQDCPI--EWFHYGCVGLTEAPKGKWYCPQCTAAMK 57 (70)
T ss_dssp CSCCCCS-TTSCCC-CS-SEECCSCTTCSC--CCEEHHHHTCSSCCSSCCCCHHHHHHHH
T ss_pred CCCCeEE-EcCCCC-CC-CEeEeCCCCCCc--cCCcccccccCcCCCCCEECCCCCcccc
Confidence 3455667 587653 33 444 2455643 5999999862111235789999976643
No 105
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=27.42 E-value=7.7 Score=39.02 Aligned_cols=52 Identities=15% Similarity=0.225 Sum_probs=32.2
Q ss_pred CCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHhc---CCccccccCccc
Q 020096 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK---GNKNCEVCGKEV 252 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k---g~~~CEICk~~y 252 (331)
.+...| ||....+.+..++.=..|. .|+|..|+.-=-... +...|+.|....
T Consensus 35 ~~~~yC-~C~~~~d~~~~MIqCd~C~---~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 35 PPPVYC-VCRQPYDVNRFMIECDICK---DWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CCCEET-TTTEECCTTSCEEEBTTTC---CEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred CCCeEE-eCCCcCCCCCCeEEccCCC---CceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 334445 8876554445566544565 699999974221111 358999998754
No 106
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=27.09 E-value=43 Score=25.06 Aligned_cols=55 Identities=24% Similarity=0.463 Sum_probs=32.3
Q ss_pred CCccccCCCCeeeEeccCcCCCCccccccc---ccCccceeCHHHHHHHHHh-------cCCccccccCcc
Q 020096 191 NDEEIAEEEAVCRICLDICEEGNTLKMECS---CKGALRLVHEECAIRWFST-------KGNKNCEVCGKE 251 (331)
Q Consensus 191 ~~ed~~eee~~CRICle~~eeg~~Li~PC~---CkGslk~VH~~CL~kWl~~-------kg~~~CEICk~~ 251 (331)
+++..+++...| ||....+.| .+| -|. |. .|+|-.|+.-=-.. -....|+.|+..
T Consensus 8 dd~~~~~~~~~C-iC~~~~~~g-~MI-~CD~~~C~---~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 8 EDPFQPEIKVRC-VCGNSLETD-SMI-QCEDPRCH---VWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCSSSCCCCCCC-SSCCCCCCS-CEE-ECSSTTTC---CEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred ccccCCCCCEEe-ECCCcCCCC-CEE-EECCccCC---ccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 344444567778 898764333 344 343 64 39999996421111 136789988754
No 107
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.56 E-value=3 Score=29.60 Aligned_cols=47 Identities=30% Similarity=0.570 Sum_probs=28.8
Q ss_pred cCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHh--cCCccccccC
Q 020096 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KGNKNCEVCG 249 (331)
Q Consensus 196 ~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~--kg~~~CEICk 249 (331)
.+++..|.+|... ++ |+ -| .+=-+.+|..||..=+.. ++.+.|+.|.
T Consensus 6 ~~~~~~C~vC~~~---g~-ll-~C--d~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQ-LL-MC--DTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp CSSCCSCSSSCCS---SC-CE-EC--SSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCCccCCCC---Ce-EE-Ec--CCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 3456789999764 33 33 22 233468999998743322 3567888774
No 108
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=26.36 E-value=4.4 Score=29.75 Aligned_cols=48 Identities=29% Similarity=0.589 Sum_probs=30.6
Q ss_pred CCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHH--hcCCccccccCcc
Q 020096 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFS--TKGNKNCEVCGKE 251 (331)
Q Consensus 197 eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~--~kg~~~CEICk~~ 251 (331)
.++..|.||... |+ |+ - |.+=-+.+|..||..=+. -++.+.|+.|...
T Consensus 6 ~~~~~C~vC~~~---g~-ll-~--CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---GE-LI-C--CDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---SS-CE-E--CSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---CC-EE-E--cCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 457789999863 33 32 2 223346899999874332 2367899999643
No 109
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=24.47 E-value=2 Score=31.56 Aligned_cols=48 Identities=23% Similarity=0.566 Sum_probs=29.1
Q ss_pred cCCCCeeeEeccCcCCCCcccc--cccccCccceeCHHHHHHHHHh--cCCccccccCc
Q 020096 196 AEEEAVCRICLDICEEGNTLKM--ECSCKGALRLVHEECAIRWFST--KGNKNCEVCGK 250 (331)
Q Consensus 196 ~eee~~CRICle~~eeg~~Li~--PC~CkGslk~VH~~CL~kWl~~--kg~~~CEICk~ 250 (331)
+++...| ||.... .| .++. -|.|. ..++|..|+. |.. .+...|+.|..
T Consensus 8 ~~e~~yC-~C~~~~-~g-~MI~CD~c~C~--~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 8 PNEPTYC-LCNQVS-YG-EMIGCDNEQCP--IEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp --CCEET-TTTEEC-CS-EEEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCCCcEE-ECCCCC-CC-CeeeeeCCCCC--cccEecccCC--cCcCCCCCEECcCccc
Confidence 3455667 897653 23 4542 34465 2699999987 322 35788988864
No 110
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=21.12 E-value=13 Score=29.33 Aligned_cols=49 Identities=22% Similarity=0.584 Sum_probs=32.4
Q ss_pred cCCCCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHHh--cCCccccccCcc
Q 020096 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KGNKNCEVCGKE 251 (331)
Q Consensus 196 ~eee~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~--kg~~~CEICk~~ 251 (331)
.+++..|.+|... |+ |+. |.+=-+.+|..||..=+.. .+.+.|..|...
T Consensus 22 d~n~~~C~vC~~~---g~-LL~---CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---GD-LVM---CNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---SC-CEE---CTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---CC-EEE---CCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3456789999764 33 332 4455578999998543322 368999999864
No 111
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=20.93 E-value=13 Score=34.11 Aligned_cols=49 Identities=16% Similarity=0.289 Sum_probs=26.5
Q ss_pred CCeeeEeccCcCCCCcccccccccCccceeCHHHHHHHHH--hcC-CccccccCcc
Q 020096 199 EAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFS--TKG-NKNCEVCGKE 251 (331)
Q Consensus 199 e~~CRICle~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~--~kg-~~~CEICk~~ 251 (331)
+..|.+|.....++. |+ - |.|--..+|..||.-=+. -+| .+.|+.|...
T Consensus 174 ~c~C~vC~~~~~~~~-lL-~--CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 174 VCACHLCGGRQDPDK-QL-M--CDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TTSCSSSCCCCC--C-CE-E--CSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCCcCCCCCCCCCC-eE-E--cCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 347888876544333 33 2 233346899999863222 246 7899999653
Done!