BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020097
(331 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P53610|PGTB1_RAT Geranylgeranyl transferase type-1 subunit beta OS=Rattus norvegicus
GN=Pggt1b PE=1 SV=1
Length = 377
Score = 233 bits (595), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 125/315 (39%), Positives = 185/315 (58%), Gaps = 16/315 (5%)
Query: 5 ESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKADLTNGE 64
+ LP Y E +R+T+A FA+SGL +L +LD V+KD + +W+ SLQ P+ D +N +
Sbjct: 34 QVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTE--DRSNLD 91
Query: 65 FYGFHGSP--SSQLHPDDNGVLMH--NGSNLASTYCALAILKAVGYNFANIDSKSILTSM 120
GF GS +P N H + ++A TY L+ L +G + + +D ++ L +
Sbjct: 92 RCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGL 151
Query: 121 RNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFG 180
R LQ DGSF + G+E D+RFVYCA+ IC++L +WSGMD ++A +YI SYD G
Sbjct: 152 RALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLA 211
Query: 181 LTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQG 240
G ESHGG T+C +ASL LMG +E+ K +L + WC+ RQ G+ G
Sbjct: 212 QGAGLESHGGSTFCGIASLCLMGKLEEVFSEK-------ELNRIKRWCIMRQ--QNGYHG 262
Query: 241 RANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQ-YGGFGKCPGDLPDLYHS 299
R NKP DTCY+FW+G+ L++L + + E R ++L+ Q + GGF K P PD H+
Sbjct: 263 RPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHA 322
Query: 300 FYGYTAFSLLEEPGL 314
++G SL+EE G+
Sbjct: 323 YFGICGLSLMEESGI 337
>sp|Q8BUY9|PGTB1_MOUSE Geranylgeranyl transferase type-1 subunit beta OS=Mus musculus
GN=Pggt1b PE=2 SV=1
Length = 377
Score = 232 bits (591), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 128/322 (39%), Positives = 185/322 (57%), Gaps = 30/322 (9%)
Query: 5 ESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKADLTNGE 64
+ LP Y E +R+T+A FA+SGL +L +LD V+KD + +W+ SLQ P+ D +N
Sbjct: 34 QVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTE--DRSNLS 91
Query: 65 FYGFHGS--------PSSQ---LHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDS 113
GF GS PS HP D+G ++A TY L+ L +G + +D
Sbjct: 92 RCGFRGSSYLGIPFNPSKNPGAAHPYDSG-------HIAMTYTGLSCLIILGDDLGRVDK 144
Query: 114 KSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQ 173
++ L +R LQ DGSF + G+E D+RFVYCA+ IC++L +WSGMD ++A +YI
Sbjct: 145 EACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSM 204
Query: 174 SYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQA 233
SYD G G ESHGG T+C +ASL LMG +E+ K +L + WC+ RQ
Sbjct: 205 SYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEK-------ELNRIKRWCIMRQ- 256
Query: 234 ADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQ-YGGFGKCPGD 292
G+ GR NKP DTCY+FW+G+ L++L + + E R ++L+ Q + GGF K P
Sbjct: 257 -QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDS 315
Query: 293 LPDLYHSFYGYTAFSLLEEPGL 314
PD H+++G SL+EE G+
Sbjct: 316 HPDALHAYFGICGLSLMEESGI 337
>sp|P53609|PGTB1_HUMAN Geranylgeranyl transferase type-1 subunit beta OS=Homo sapiens
GN=PGGT1B PE=1 SV=2
Length = 377
Score = 231 bits (589), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 127/322 (39%), Positives = 185/322 (57%), Gaps = 30/322 (9%)
Query: 5 ESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKADLTNGE 64
+ LP Y E +R+T+A FA+SGL +L +LD V+KD + +W+ SLQ P+ D +N
Sbjct: 34 QVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTE--DRSNLN 91
Query: 65 FYGFHGS--------PSS---QLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDS 113
GF GS PS HP D+G ++A TY L+ L +G + + ++
Sbjct: 92 RCGFRGSSYLGIPFNPSKAPGTAHPYDSG-------HIAMTYTGLSCLVILGDDLSRVNK 144
Query: 114 KSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQ 173
++ L +R LQ DGSF + G+E D+RFVYCA+ IC++L +WSGMD ++A YI
Sbjct: 145 EACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAITYIRRSM 204
Query: 174 SYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQA 233
SYD G G ESHGG T+C +ASL LMG +E+ K +L + WC+ RQ
Sbjct: 205 SYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEK-------ELNRIKRWCIMRQ- 256
Query: 234 ADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQ-YGGFGKCPGD 292
G+ GR NKP DTCY+FW+G+ L++L + + E R ++L+ Q + GGF K P
Sbjct: 257 -QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDS 315
Query: 293 LPDLYHSFYGYTAFSLLEEPGL 314
PD H+++G SL+EE G+
Sbjct: 316 HPDALHAYFGICGLSLMEESGI 337
>sp|Q5EAD5|PGTB1_BOVIN Geranylgeranyl transferase type-1 subunit beta OS=Bos taurus
GN=PGGT1B PE=2 SV=1
Length = 377
Score = 230 bits (587), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 124/315 (39%), Positives = 183/315 (58%), Gaps = 16/315 (5%)
Query: 5 ESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKADLTNGE 64
+ LP Y E +R+T+A FA+SGL +L +LD V+KD + +W+ SLQ P+ D +N
Sbjct: 34 QVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTE--DRSNLN 91
Query: 65 FYGFHGSP--SSQLHPDDNGVLMH--NGSNLASTYCALAILKAVGYNFANIDSKSILTSM 120
GF GS +P N H + ++A TY L+ L +G + + ++ ++ L +
Sbjct: 92 RCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLVILGDDLSRVNKEACLAGL 151
Query: 121 RNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFG 180
R LQ DGSF + G+E D+RFVYCA+ IC++L +WSGMD ++A YI SYD G
Sbjct: 152 RALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAINYIRRSMSYDNGLA 211
Query: 181 LTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQG 240
G ESHGG T+C +ASL LMG +E+ K +L + WC+ RQ G+ G
Sbjct: 212 QGAGLESHGGSTFCGIASLCLMGKLEEVFSEK-------ELNRIKRWCIMRQ--QNGYHG 262
Query: 241 RANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQ-YGGFGKCPGDLPDLYHS 299
R NKP DTCY+FW+G+ L++L + + E R ++L+ Q + GGF K P PD H+
Sbjct: 263 RPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHA 322
Query: 300 FYGYTAFSLLEEPGL 314
++G SL+EE G+
Sbjct: 323 YFGICGLSLMEESGI 337
>sp|Q55DA3|PGTB1_DICDI Geranylgeranyl transferase type-1 subunit beta OS=Dictyostelium
discoideum GN=pggt1b PE=2 SV=1
Length = 352
Score = 196 bits (499), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 121/335 (36%), Positives = 181/335 (54%), Gaps = 23/335 (6%)
Query: 6 SLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDA--VSDWVLSLQAHPSNKADLTNG 63
+LP Y N ++L F +SGL LL D ++K+ + +WV S Q PS N
Sbjct: 20 ALPAPYTSGLPNHLSLIFFVVSGLDLLNKTDILEKEKQDIINWVYSRQILPSKDNPEINL 79
Query: 64 EFYGFHGSP--------SSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKS 115
E GF G +H +NG L ++ + +TYCAL IL+ +G +F+ ++ K+
Sbjct: 80 ENCGFRGYNFLGQEFCCDKSVHTSENGPLEYDLPSTPNTYCALLILRILGDDFSGVNKKA 139
Query: 116 ILTSMRNLQQH-DGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQS 174
I+ S+R Q+ DG+ + DLR ++ A AI F+L+DWS +++E A YI +C S
Sbjct: 140 IIDSLRKRQRESDGAISGSPNVGDYDLRHLFSACAISFILDDWSAINKESAIDYIKSCLS 199
Query: 175 YDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAA 234
Y+ FG TP E+HGG TYCA+ASL L+G ++ VL L W +++Q
Sbjct: 200 YEFAFGQTPQQEAHGGPTYCAIASLSLLGRLD--VLEPFKEQ-------LTFWLVKKQIT 250
Query: 235 DGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQ-YGGFGKCPGDL 293
GF GR NK DTCYAFWIG+ L M+ Y+LID ++ F+ + Q + GG K PG L
Sbjct: 251 --GFCGRTNKDPDTCYAFWIGASLMMIDRYDLIDFASINAFIGSAQHEAIGGVAKEPGQL 308
Query: 294 PDLYHSFYGYTAFSLLEEPGLNPLCAELGMTEFSA 328
PD+ HS+ S P + + L +++ +A
Sbjct: 309 PDVMHSYLSLVGLSFGNIPSIQQVIPCLNLSKRAA 343
>sp|B0G172|PGTB2_DICDI Probable geranylgeranyl transferase type-2 subunit beta
OS=Dictyostelium discoideum GN=rabggtb PE=3 SV=1
Length = 339
Score = 156 bits (394), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/303 (33%), Positives = 155/303 (51%), Gaps = 46/303 (15%)
Query: 36 DRVDKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTY 95
D++DK+ V W+LS Q +NG GF G+ S H L ST
Sbjct: 68 DKLDKNEVIQWLLSCQK--------SNG---GFGGNTSHDDH-------------LLSTL 103
Query: 96 CALAILKAVGYN-FANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLL 154
A+ IL + Y+ ID S++ + LQ+ DGSF+ +G E D RF Y A LL
Sbjct: 104 SAVQIL--IQYDALDKIDINSVVDYVVKLQREDGSFVGDQWG-EVDTRFSYAAIMCLSLL 160
Query: 155 EDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNT 214
+ ++ E+A YIL+CQ++DGGFG PG+ESH G + V +L ++ I
Sbjct: 161 KSLDKINCEKAVEYILSCQNFDGGFGSIPGAESHAGQIFTCVGALSILNEINK------- 213
Query: 215 SSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRG 274
ID+ L W +RQ +GG GR K SD CY++W+ S L + + ID + L+
Sbjct: 214 ----IDIDKLGWWLSERQLPNGGLNGRPEKSSDVCYSWWVLSALSAIDRLHWIDNDKLKS 269
Query: 275 FLLTCQ-SQYGGFGKCPGDLPDLYHSFYGYTAFSLL-----EEPGLNPLCAELGMTEFSA 328
++L CQ ++ GG PGD+PD++H+F+G SL+ + ++P+ A LG
Sbjct: 270 YILKCQDNETGGIADKPGDIPDVFHTFFGICGLSLMGYFKDQIESIDPVYA-LGTKTLQK 328
Query: 329 LGI 331
LG+
Sbjct: 329 LGL 331
>sp|Q5E9B3|PGTB2_BOVIN Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus
GN=RABGGTB PE=2 SV=1
Length = 331
Score = 147 bits (372), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 103/326 (31%), Positives = 159/326 (48%), Gaps = 42/326 (12%)
Query: 4 YESLPHHYQY--QEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKADLT 61
Y S Y+Y E R++ ++ ++ + L+G L R++++ + ++ S Q
Sbjct: 30 YGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILTFIKSCQH--------- 80
Query: 62 NGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFAN-IDSKSILTSM 120
E G S H L T A+ IL Y+ N ID ++ +
Sbjct: 81 --ECGGISASIGHDPH-------------LLYTLSAVQILTL--YDSINVIDINKVVEYV 123
Query: 121 RNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFG 180
++LQ+ DGSF +G E D RF +CA A LL ++ E+A ++L+C ++DGGFG
Sbjct: 124 QSLQKEDGSFAGDIWG-EIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFG 182
Query: 181 LTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQG 240
PGSESH G YC GF L+ + ++ LL W +RQ GG G
Sbjct: 183 CRPGSESHAGQIYCCT------GF-----LAITSQLHQVNSDLLGWWLCERQLPSGGLNG 231
Query: 241 RANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQ-SQYGGFGKCPGDLPDLYHS 299
R K D CY++W+ + L+++G + ID+E LR F+L CQ + GGF PGD+ D +H+
Sbjct: 232 RPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHT 291
Query: 300 FYGYTAFSLLEEPGLNPLCAELGMTE 325
+G SLL E + P+ M E
Sbjct: 292 LFGIAGLSLLGEEQIKPVSPVFCMPE 317
>sp|P53611|PGTB2_HUMAN Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens
GN=RABGGTB PE=1 SV=2
Length = 331
Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/326 (31%), Positives = 158/326 (48%), Gaps = 42/326 (12%)
Query: 4 YESLPHHYQY--QEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKADLT 61
Y S Y+Y E R++ ++ ++ + L+G L R++++ + ++ S Q
Sbjct: 30 YGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILAFIKSCQH--------- 80
Query: 62 NGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFAN-IDSKSILTSM 120
E G S H L T A+ IL Y+ N ID ++ +
Sbjct: 81 --ECGGISASIGHDPH-------------LLYTLSAVQILTL--YDSINVIDVNKVVEYV 123
Query: 121 RNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFG 180
+ LQ+ DGSF +G E D RF +CA A LL ++ E+A ++L+C ++DGGFG
Sbjct: 124 KGLQKEDGSFAGDIWG-EIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFG 182
Query: 181 LTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQG 240
PGSESH G YC GF L+ + ++ LL W +RQ GG G
Sbjct: 183 CRPGSESHAGQIYCCT------GF-----LAITSQLHQVNSDLLGWWLCERQLPSGGLNG 231
Query: 241 RANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQ-SQYGGFGKCPGDLPDLYHS 299
R K D CY++W+ + L+++G + ID+E LR F+L CQ + GGF PGD+ D +H+
Sbjct: 232 RPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRNFILACQDEETGGFADRPGDMVDPFHT 291
Query: 300 FYGYTAFSLLEEPGLNPLCAELGMTE 325
+G SLL E + P+ M E
Sbjct: 292 LFGIAGLSLLGEEQIKPVNPVFCMPE 317
>sp|Q08603|PGTB2_RAT Geranylgeranyl transferase type-2 subunit beta OS=Rattus norvegicus
GN=Rabggtb PE=1 SV=1
Length = 331
Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 97/325 (29%), Positives = 162/325 (49%), Gaps = 40/325 (12%)
Query: 4 YESLPHHYQY--QEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKADLT 61
Y S Y+Y E R++ ++ ++ + L+G L R++K+ + ++ S Q
Sbjct: 30 YGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKSCQHEC------- 82
Query: 62 NGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSILTSMR 121
G S+ + D + + + + + Y ++ ++ N+D ++ ++
Sbjct: 83 --------GGVSASIGHDPHLLYTLSAVQILTLYDSIHVI--------NVDK--VVAYVQ 124
Query: 122 NLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGL 181
+LQ+ DGSF +G E D RF +CA A LL ++ E+A ++L+C ++DGGFG
Sbjct: 125 SLQKEDGSFAGDIWG-EIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGC 183
Query: 182 TPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGR 241
PGSESH G YC GF L+ + ++ LL W +RQ GG GR
Sbjct: 184 RPGSESHAGQIYCCT------GF-----LAITSQLHQVNSDLLGWWLCERQLPSGGLNGR 232
Query: 242 ANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQ-SQYGGFGKCPGDLPDLYHSF 300
K D CY++W+ + L+++G + ID+E LR F+L CQ + GGF PGD+ D +H+
Sbjct: 233 PEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTL 292
Query: 301 YGYTAFSLLEEPGLNPLCAELGMTE 325
+G SLL E + P+ M E
Sbjct: 293 FGIAGLSLLGEEQIKPVSPVFCMPE 317
>sp|P53612|PGTB2_MOUSE Geranylgeranyl transferase type-2 subunit beta OS=Mus musculus
GN=Rabggtb PE=1 SV=2
Length = 339
Score = 145 bits (367), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 162/325 (49%), Gaps = 40/325 (12%)
Query: 4 YESLPHHYQY--QEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKADLT 61
Y S Y+Y E R++ ++ ++ + L+G L R++++ + ++ S Q
Sbjct: 38 YGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNREEILVFIKSCQHEC------- 90
Query: 62 NGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSILTSMR 121
G S+ + D + + + + + Y ++ ++ N+D ++ ++
Sbjct: 91 --------GGISASIGHDPHLLYTLSAVQILTLYDSVHVI--------NVDK--VVAYVQ 132
Query: 122 NLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGL 181
+LQ+ DGSF +G E D RF +CA A LL ++ E+A ++L+C ++DGGFG
Sbjct: 133 SLQKEDGSFAGDIWG-EIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGC 191
Query: 182 TPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGR 241
PGSESH G YC GF L+ + ++ LL W +RQ GG GR
Sbjct: 192 RPGSESHAGQIYCCT------GF-----LAITSQLHQVNSDLLGWWLCERQLPSGGLNGR 240
Query: 242 ANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQ-SQYGGFGKCPGDLPDLYHSF 300
K D CY++W+ + L+++G + ID+E LR F+L CQ + GGF PGD+ D +H+
Sbjct: 241 PEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTL 300
Query: 301 YGYTAFSLLEEPGLNPLCAELGMTE 325
+G SLL E + P+ M E
Sbjct: 301 FGIAGLSLLGEEQIKPVSPVFCMPE 325
>sp|P41992|GGTB2_CAEEL Probable geranylgeranyl transferase type-2 subunit beta
OS=Caenorhabditis elegans GN=ggtb-1 PE=3 SV=2
Length = 335
Score = 145 bits (366), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 97/318 (30%), Positives = 152/318 (47%), Gaps = 38/318 (11%)
Query: 9 HHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKADLTNGEFYGF 68
+HY E R++ ++ ++ + L L+R+ + + ++VL + T+G G+
Sbjct: 43 YHYIMAEHLRVSGIYWCVNAMDLSKQLERMSTEEIVNYVLGCRN--------TDG---GY 91
Query: 69 HGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDG 128
+P H L+H T CA+ L + + D+ +I ++ LQQ DG
Sbjct: 92 GPAPGHDSH------LLH-------TLCAVQTL-IIFNSIEKADADTISEYVKGLQQEDG 137
Query: 129 SFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESH 188
SF E D RF C+ A C LL S ++ + A +++ C + DGGFG PGSESH
Sbjct: 138 SFCG-DLSGEVDTRFTLCSLATCHLLGRLSTLNIDSAVRFLMRCYNTDGGFGTRPGSESH 196
Query: 189 GGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDT 248
G YC V +L + G +++ ID W RQ GG GR K D
Sbjct: 197 SGQIYCCVGALAIAGRLDE-----------IDRDRTAEWLAFRQCDSGGLNGRPEKLPDV 245
Query: 249 CYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQ-SQYGGFGKCPGDLPDLYHSFYGYTAFS 307
CY++W+ + L +LG N ID +A++ F+ CQ + GGF PGD D +H+ +G A S
Sbjct: 246 CYSWWVLASLAILGRLNFIDSDAMKKFIYACQDDETGGFADRPGDCADPFHTVFGIAALS 305
Query: 308 LLEEPGLNPLCAELGMTE 325
L + L + MT+
Sbjct: 306 LFGDDTLESVDPIFCMTK 323
>sp|P32434|PGTB1_SCHPO Geranylgeranyl transferase type-1 subunit beta
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cwg2 PE=3 SV=1
Length = 355
Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 159/327 (48%), Gaps = 16/327 (4%)
Query: 7 LPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKADLTNGEFY 66
P Y+ + R LA F + GL LL AL+ +D D W+ + + K + G Y
Sbjct: 19 FPTPYEEHDCERTVLAFFCLLGLDLLNALNTIDDDDKKSWIEWIYKNYVTKE--SKGIKY 76
Query: 67 GFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQH 126
+ + + P + LA T ++ L +G N + ID I + +
Sbjct: 77 SGFQAYRTGIQP----ISFEQEPQLAGTVFSICCLLFLGDNLSRIDRDLIKNFVELCKTS 132
Query: 127 DGSFMPIHFGA--EKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPG 184
G F I + ++D+R +Y A I LL D+S D + YI +CQ Y+GGF L P
Sbjct: 133 QGHFRSIAVPSCSDQDMRQLYMATTIASLL-DFSLSDPLCSIQYIKSCQRYEGGFSLLPY 191
Query: 185 SESHGGGTYCAVASLRL-MGFIEDNVL-SKNTSSSIID----LPLLLSWCLQRQAADGGF 238
E+H G T+CA+AS L + I ++ L + N S +++D + L+ W RQ + GG
Sbjct: 192 GEAHAGATFCALASWSLILKMIPNSSLNTSNQSYNLMDCVPKVERLIRWLASRQLSSGGL 251
Query: 239 QGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLT-CQSQYGGFGKCPGDLPDLY 297
GR NK DTCYA+W+ S L++L ID L +LL Q GGF K PG+ PD+
Sbjct: 252 NGRTNKDVDTCYAYWVLSSLKLLDALPFIDGGELEKYLLLHAQHALGGFSKTPGEFPDVL 311
Query: 298 HSFYGYTAFSLLEEPGLNPLCAELGMT 324
HS G A + ++ + A++ MT
Sbjct: 312 HSALGLYAMAYQDDKSFPKVNADIHMT 338
>sp|O93830|PGTB2_CANAX Geranylgeranyl transferase type-2 subunit beta OS=Candida albicans
GN=BET2 PE=3 SV=1
Length = 341
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 121/237 (51%), Gaps = 21/237 (8%)
Query: 86 HNGSNLASTYCALAILKAVGYNFANIDS----------KSILTSMRNLQQHDGSFMPIHF 135
H+G ++ ST AL +LK ++ + ++ + LQ DGSF +
Sbjct: 86 HDG-HILSTLSALQVLKIYDQELTVLNDNNESSNGNKRERLIKFITGLQLPDGSFQGDKY 144
Query: 136 GAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCA 195
G E D RFVY A + LL + + A A+I+ C ++DGGFGL PGSESH +
Sbjct: 145 G-EVDTRFVYTAVSSLSLLNALTDSIADTASAFIMQCFNFDGGFGLIPGSESHAAQVFTC 203
Query: 196 VASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQA-ADGGFQGRANKPSDTCYAFWI 254
V +L +M + D + +N +ID W +RQ GGF GR K D CY++W+
Sbjct: 204 VGALAIMNKL-DLLDVENKKVKLID------WLTERQVLPSGGFNGRPEKLPDVCYSWWV 256
Query: 255 GSVLRMLGGYNLIDKEALRGFLLTCQS-QYGGFGKCPGDLPDLYHSFYGYTAFSLLE 310
S L +L N +D + L F+LTCQ + GGF PG+ D+YH+ + SL++
Sbjct: 257 LSSLSILKRKNWVDLKILENFILTCQDLENGGFSDRPGNQTDVYHTCFAIAGLSLID 313
>sp|Q55D51|FNTB_DICDI Protein farnesyltransferase subunit beta OS=Dictyostelium
discoideum GN=fntB PE=3 SV=1
Length = 500
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 125/249 (50%), Gaps = 41/249 (16%)
Query: 89 SNLASTYCALAILKAVGY--NFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYC 146
S++ ST+ A++ L +G ++ ID +++ + ++ +G+F G E D R YC
Sbjct: 146 SHVVSTFAAVSALYVIGTEESYKTIDREAMYKFLMRMKTKEGAFTS-EDGGEYDSRTTYC 204
Query: 147 AAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIE 206
A A+ +L + ++L+CQ+Y+GGFG P +E+HGG T+C+VA+L ++
Sbjct: 205 AIAVASMLNILTAELERGVVDFLLSCQTYEGGFGAYPFNEAHGGYTFCSVAALSIL---- 260
Query: 207 DNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYN- 265
N L K ID+ L W RQ+ DGGF+GR NK DTCY++W G+V ++ Y
Sbjct: 261 -NSLHK------IDMNSLHRWITYRQSNDGGFEGRTNKLVDTCYSYWQGAVYIIIQSYFN 313
Query: 266 ----------------------LIDKEALRGFLLT-CQ---SQYGGFGKCPGDLPDLYHS 299
L ++ L+ +++ CQ +Y GF P D YH+
Sbjct: 314 YYKKQQQDDGDGKEGDQQEEGLLFNQAKLQEYVIRFCQQSDKKYSGFSDHPHRGKDYYHT 373
Query: 300 FYGYTAFSL 308
YG + SL
Sbjct: 374 CYGLSGISL 382
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 14/126 (11%)
Query: 187 SHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPS 246
SH T+ AV++L ++G E S ID + + ++ + +G F
Sbjct: 146 SHVVSTFAAVSALYVIGTEE--------SYKTIDREAMYKFLMRMKTKEGAFTSEDGGEY 197
Query: 247 DTCYAFWIGSVLRMLGGYNLIDKEALRG---FLLTCQSQYGGFGKCPGDLPDLYHSFYGY 303
D+ + +V ML N++ E RG FLL+CQ+ GGFG P + ++F
Sbjct: 198 DSRTTYCAIAVASML---NILTAELERGVVDFLLSCQTYEGGFGAYPFNEAHGGYTFCSV 254
Query: 304 TAFSLL 309
A S+L
Sbjct: 255 AALSIL 260
>sp|P46960|PGTB2_SCHPO Geranylgeranyl transferase type-2 subunit beta
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ptb1 PE=3 SV=1
Length = 311
Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/320 (27%), Positives = 145/320 (45%), Gaps = 42/320 (13%)
Query: 11 YQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKADLTNGEFYGFHG 70
+ +E ++ +++ LL D++DK+ + ++LS E GF
Sbjct: 25 FWLKEHLHVSAIYWSCMSFWLLKKKDQIDKERIVSFLLSCLT-----------ESGGFAC 73
Query: 71 SPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSF 130
P H +N LA+L ++ +D + + + LQ DGS
Sbjct: 74 YPGHDDHI----------TNTVYAVQVLAMLDSLHV----VDKDKVASYIIGLQNEDGSM 119
Query: 131 MPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGG 190
+G E D RF+Y +L +++ A +++ C ++DGGFGL PG+ESHG
Sbjct: 120 KGDRWG-EIDARFLYSGINCLAILGKLDYLNKNTAVDWLMKCYNFDGGFGLCPGAESHGA 178
Query: 191 GTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCY 250
+ VA+L+++ ++ +ID LL W +RQ GG GR K D+CY
Sbjct: 179 MVFTCVAALKILNKLD-----------LIDEELLGWWISERQVKGGGLNGRPEKLPDSCY 227
Query: 251 AFWIGSVLRMLGGYNLIDKEALRGFLLTCQ-SQYGGFGKCPGDLPDLYHSFYGYTAFSLL 309
+W S L ++G + ID+ L FLL Q + GGF D D+YH+ + SLL
Sbjct: 228 GWWDLSPLAIIGKLDWIDRNQLIDFLLGTQDADSGGFADRKEDATDVYHTCFSLAGLSLL 287
Query: 310 EEPGLNPL----CAELGMTE 325
+ P + P+ C L +T+
Sbjct: 288 QFPNIEPVDPRFCLPLEVTQ 307
>sp|Q8K2I1|FNTB_MOUSE Protein farnesyltransferase subunit beta OS=Mus musculus GN=Fntb
PE=1 SV=1
Length = 437
Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 123/241 (51%), Gaps = 29/241 (12%)
Query: 90 NLASTYCALAILKAVGYNFAN--IDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCA 147
+LA TY A+ L +G A I+ + +L + +L+Q DGSF+ +H G E D+R YCA
Sbjct: 149 HLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFL-MHVGGEVDVRSAYCA 207
Query: 148 AAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIED 207
A++ L + E +I CQ+++GG G PG E+HGG T+C +A+L
Sbjct: 208 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALV------- 260
Query: 208 NVLSKNTSSSIIDLPLLLSWCLQRQAA-DGGFQGRANKPSDTCYAFWIGSVLRMLG---- 262
+L K S ++L LL W RQ +GGFQGR NK D CY+FW +L +L
Sbjct: 261 -ILKKERS---LNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALH 316
Query: 263 ---------GYNLIDKEALRGFLLT-CQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEP 312
+ + ++AL+ ++L CQ GG PG D YH+ Y + S+ +
Sbjct: 317 AQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF 376
Query: 313 G 313
G
Sbjct: 377 G 377
Score = 35.0 bits (79), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 14/143 (9%)
Query: 172 CQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQR 231
CQS DGGFG PG H TY AV +L ++G E + ++I+ LL +
Sbjct: 133 CQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEE--------AYNVINREKLLQYLYSL 184
Query: 232 QAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRG---FLLTCQSQYGGFGK 288
+ DG F D A+ SV + N+I + G ++ CQ+ GG G
Sbjct: 185 KQPDGSFLMHVGGEVDVRSAYCAASVASLT---NIITPDLFEGTAEWIARCQNWEGGIGG 241
Query: 289 CPGDLPDLYHSFYGYTAFSLLEE 311
PG ++F G A +L++
Sbjct: 242 VPGMEAHGGYTFCGLAALVILKK 264
>sp|Q02293|FNTB_RAT Protein farnesyltransferase subunit beta OS=Rattus norvegicus
GN=Fntb PE=1 SV=1
Length = 437
Score = 119 bits (297), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 123/241 (51%), Gaps = 29/241 (12%)
Query: 90 NLASTYCALAILKAVGYNFAN--IDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCA 147
+LA TY A+ L +G A I+ + +L + +L+Q DGSF+ +H G E D+R YCA
Sbjct: 149 HLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFL-MHVGGEVDVRSAYCA 207
Query: 148 AAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIED 207
A++ L + E +I CQ+++GG G PG E+HGG T+C +A+L
Sbjct: 208 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALV------- 260
Query: 208 NVLSKNTSSSIIDLPLLLSWCLQRQAA-DGGFQGRANKPSDTCYAFWIGSVLRMLG---- 262
+L K S ++L LL W RQ +GGFQGR NK D CY+FW +L +L
Sbjct: 261 -ILKKERS---LNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALH 316
Query: 263 ---------GYNLIDKEALRGFLLT-CQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEP 312
+ + ++AL+ ++L CQ GG PG D YH+ Y + S+ +
Sbjct: 317 AQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF 376
Query: 313 G 313
G
Sbjct: 377 G 377
Score = 35.0 bits (79), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 14/143 (9%)
Query: 172 CQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQR 231
CQS DGGFG PG H TY AV +L ++G E + ++I+ LL +
Sbjct: 133 CQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEE--------AYNVINREKLLQYLYSL 184
Query: 232 QAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRG---FLLTCQSQYGGFGK 288
+ DG F D A+ SV + N+I + G ++ CQ+ GG G
Sbjct: 185 KQPDGSFLMHVGGEVDVRSAYCAASVASLT---NIITPDLFEGTAEWIARCQNWEGGIGG 241
Query: 289 CPGDLPDLYHSFYGYTAFSLLEE 311
PG ++F G A +L++
Sbjct: 242 VPGMEAHGGYTFCGLAALVILKK 264
>sp|P49356|FNTB_HUMAN Protein farnesyltransferase subunit beta OS=Homo sapiens GN=FNTB
PE=1 SV=1
Length = 437
Score = 118 bits (296), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 123/241 (51%), Gaps = 29/241 (12%)
Query: 90 NLASTYCALAILKAVGYNFAN--IDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCA 147
+LA TY A+ L +G A I+ + +L + +L+Q DGSF+ +H G E D+R YCA
Sbjct: 149 HLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFL-MHVGGEVDVRSAYCA 207
Query: 148 AAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIED 207
A++ L + E +I CQ+++GG G PG E+HGG T+C +A+L
Sbjct: 208 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAAL-------- 259
Query: 208 NVLSKNTSSSIIDLPLLLSWCLQRQAA-DGGFQGRANKPSDTCYAFWIGSVLRMLG---- 262
V+ K S ++L LL W RQ +GGFQGR NK D CY+FW +L +L
Sbjct: 260 -VILKRERS--LNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALH 316
Query: 263 ---------GYNLIDKEALRGFLLT-CQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEP 312
+ + ++AL+ ++L CQ GG PG D YH+ Y + S+ +
Sbjct: 317 AQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF 376
Query: 313 G 313
G
Sbjct: 377 G 377
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 64/148 (43%), Gaps = 15/148 (10%)
Query: 172 CQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQR 231
CQS +GGFG PG H TY AV +L ++G E + II+ LL +
Sbjct: 133 CQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEE--------AYDIINREKLLQYLYSL 184
Query: 232 QAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRG---FLLTCQSQYGGFGK 288
+ DG F D A+ SV + N+I + G ++ CQ+ GG G
Sbjct: 185 KQPDGSFLMHVGGEVDVRSAYCAASVASLT---NIITPDLFEGTAEWIARCQNWEGGIGG 241
Query: 289 CPGDLPDLYHSFYGYTAFSLLE-EPGLN 315
PG ++F G A +L+ E LN
Sbjct: 242 VPGMEAHGGYTFCGLAALVILKRERSLN 269
>sp|P49355|FNTB_BOVIN Protein farnesyltransferase subunit beta OS=Bos taurus GN=FNTB PE=2
SV=1
Length = 437
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 122/241 (50%), Gaps = 29/241 (12%)
Query: 90 NLASTYCALAILKAVGYNFAN--IDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCA 147
+LA TY A+ L +G A I+ + +L + +L+Q DGSF+ +H G E D+R YCA
Sbjct: 149 HLAPTYAAVNALCIIGTEEAYDVINREKLLQYLYSLKQPDGSFL-MHDGGEVDVRSAYCA 207
Query: 148 AAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIED 207
A++ L + E +I CQ+++GG G PG E+HGG T+C +A+L
Sbjct: 208 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAAL-------- 259
Query: 208 NVLSKNTSSSIIDLPLLLSWCLQRQAA-DGGFQGRANKPSDTCYAFWIGSVLRMLG---- 262
+L K S ++L LL W RQ +GGFQGR NK D CY+FW +L +L
Sbjct: 260 VILKKERS---LNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALH 316
Query: 263 ---------GYNLIDKEALRGFLLT-CQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEP 312
+ ++AL+ ++L CQ GG PG D YH+ Y + S+ +
Sbjct: 317 AQGDPALSMSRWMFHQQALQEYILMCCQCPTGGLLDKPGKSRDFYHTCYCLSGLSIAQHF 376
Query: 313 G 313
G
Sbjct: 377 G 377
Score = 32.0 bits (71), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 14/143 (9%)
Query: 172 CQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQR 231
CQS +GGFG PG H TY AV +L ++G E + +I+ LL +
Sbjct: 133 CQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEE--------AYDVINREKLLQYLYSL 184
Query: 232 QAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRG---FLLTCQSQYGGFGK 288
+ DG F D A+ SV + N+I + G ++ CQ+ GG G
Sbjct: 185 KQPDGSFLMHDGGEVDVRSAYCAASVASLT---NIITPDLFEGTAEWIARCQNWEGGIGG 241
Query: 289 CPGDLPDLYHSFYGYTAFSLLEE 311
PG ++F G A +L++
Sbjct: 242 VPGMEAHGGYTFCGLAALVILKK 264
>sp|P20133|PGTB2_YEAST Geranylgeranyl transferase type-2 subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=BET2 PE=1
SV=3
Length = 325
Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/317 (28%), Positives = 150/317 (47%), Gaps = 35/317 (11%)
Query: 5 ESLPHHYQY--QEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKADLTN 62
++ H+++Y E R+ ++ ++ LC+L + + K+ V +VLS +
Sbjct: 20 DTKKHNFEYWLTEHLRLNGIYWGLTALCVLDSPETFVKEEVISFVLSCW----------D 69
Query: 63 GEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSILTS-MR 121
++ F P H + + + +TY AL +L D K L S +R
Sbjct: 70 DKYGAFAPFPRHDAHL----LTTLSAVQILATYDALDVLGK--------DRKVRLISFIR 117
Query: 122 NLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGL 181
Q DGSF FG E D RFVY A + +L + + + A ++L C ++DGGFGL
Sbjct: 118 GNQLEDGSFQGDRFG-EVDTRFVYTALSALSILGELTSEVVDPAVDFVLKCYNFDGGFGL 176
Query: 182 TPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGR 241
P +ESH + + +L + + ++LS + I W +RQ +GG GR
Sbjct: 177 CPNAESHAAQAFTCLGALAIANKL--DMLSDDQLEEIG------WWLCERQLPEGGLNGR 228
Query: 242 ANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQ-YGGFGKCPGDLPDLYHSF 300
+K D CY++W+ S L ++G + I+ E L F+L CQ + GG P + D++H+
Sbjct: 229 PSKLPDVCYSWWVLSSLAIIGRLDWINYEKLTEFILKCQDEKKGGISDRPENEVDVFHTV 288
Query: 301 YGYTAFSLLEEPGLNPL 317
+G SL+ L P+
Sbjct: 289 FGVAGLSLMGYDNLVPI 305
>sp|Q04903|FNTB_PEA Protein farnesyltransferase subunit beta OS=Pisum sativum GN=FTB
PE=2 SV=1
Length = 419
Score = 115 bits (287), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 129/260 (49%), Gaps = 38/260 (14%)
Query: 14 QEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPS 73
Q I R L ++ I + LLG + +D D + V L N+ NG G+ G P
Sbjct: 41 QSIIRPWLCYWIIHSIALLG--ESIDDDLEDNTVDFL-----NRCQDPNG---GYAGGPG 90
Query: 74 SQLHPDDNGVLMHNGSNLASTYCALAILKAVG--YNFANIDSKSILTSMRNLQQHDGSFM 131
H LA+TY A+ L +G + A+I+ + MR ++Q +G F
Sbjct: 91 QMPH-------------LATTYAAVNTLITLGGEKSLASINRNKLYGFMRRMKQPNGGFR 137
Query: 132 PIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGG 191
+H E D+R Y A ++ +L + +IL+CQ+Y+GG PGSE+HGG
Sbjct: 138 -MHDEGEIDVRACYTAISVASVLNILDDELIKNVGDFILSCQTYEGGLAGEPGSEAHGGY 196
Query: 192 TYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYA 251
T+C +A++ L+G + +DLP LL W + RQ + GFQGR NK D CY+
Sbjct: 197 TFCGLAAMILIGEVNR-----------LDLPRLLDWVVFRQGKECGFQGRTNKLVDGCYS 245
Query: 252 FWIGSVLRMLGG-YNLIDKE 270
FW G + +L +++ID++
Sbjct: 246 FWQGGAVALLQRLHSIIDEQ 265
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 20/150 (13%)
Query: 168 YILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSW 227
++ CQ +GG+ PG H TY AV +L +G E ++ S N + L +
Sbjct: 74 FLNRCQDPNGGYAGGPGQMPHLATTYAAVNTLITLGG-EKSLASINRNK-------LYGF 125
Query: 228 CLQRQAADGGFQGRANKPSDT--CY-AFWIGSVLRMLGGYNLIDKEALRG---FLLTCQS 281
+ + +GGF+ D CY A + SVL N++D E ++ F+L+CQ+
Sbjct: 126 MRRMKQPNGGFRMHDEGEIDVRACYTAISVASVL------NILDDELIKNVGDFILSCQT 179
Query: 282 QYGGFGKCPGDLPDLYHSFYGYTAFSLLEE 311
GG PG ++F G A L+ E
Sbjct: 180 YEGGLAGEPGSEAHGGYTFCGLAAMILIGE 209
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/154 (20%), Positives = 64/154 (41%), Gaps = 11/154 (7%)
Query: 158 SGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSS 217
+ ++R + ++ + +GGF + E Y A++ ++ ++D ++ KN
Sbjct: 115 ASINRNKLYGFMRRMKQPNGGFRMHDEGEIDVRACYTAISVASVLNILDDELI-KNVGDF 173
Query: 218 IIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLL 277
I+ Q +GG G + Y F + + ++G N +D L +++
Sbjct: 174 ILSC----------QTYEGGLAGEPGSEAHGGYTFCGLAAMILIGEVNRLDLPRLLDWVV 223
Query: 278 TCQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEE 311
Q + GF L D +SF+ A +LL+
Sbjct: 224 FRQGKECGFQGRTNKLVDGCYSFWQGGAVALLQR 257
>sp|P22007|FNTB_YEAST Protein farnesyltransferase subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RAM1 PE=1
SV=2
Length = 431
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 117/232 (50%), Gaps = 21/232 (9%)
Query: 89 SNLASTYCA---LAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVY 145
S+LASTY A L++ + + ID K I + +L++ +G F E D R +Y
Sbjct: 155 SHLASTYAAINALSLCDNIDGCWDRIDRKGIYQWLISLKEPNGGFKTCLEVGEVDTRGIY 214
Query: 146 CAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPG-SESHGGGTYCAVASLRLMGF 204
CA +I LL + E Y+ NCQ+Y+GGFG P E+HGG T+CA ASL ++
Sbjct: 215 CALSIATLLNILTEELTEGVLNYLKNCQNYEGGFGSCPHVDEAHGGYTFCATASLAILRS 274
Query: 205 IEDNVLSKNTSSSIIDLPLLLSWCLQRQ-AADGGFQGRANKPSDTCYAFWIG---SVLRM 260
++ I++ LL W RQ + GF GR+NK D CY+FW+G ++L
Sbjct: 275 MDQ-----------INVEKLLEWSSARQLQEERGFCGRSNKLVDGCYSFWVGGSAAILEA 323
Query: 261 LGGYNLIDKEALRGFLLTC--QSQYGGFGKCPGDLPDLYHSFYGYTAFSLLE 310
G +K ALR ++L C + + G PG D YH+ Y ++ E
Sbjct: 324 FGYGQCFNKHALRDYILYCCQEKEQPGLRDKPGAHSDFYHTNYCLLGLAVAE 375
>sp|Q38920|FNTB_ARATH Protein farnesyltransferase subunit beta OS=Arabidopsis thaliana
GN=FTB PE=1 SV=3
Length = 482
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 95/169 (56%), Gaps = 20/169 (11%)
Query: 90 NLASTYCALAILKAVGYN--FANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCA 147
+LA+TY A+ L +G + ++I+ + + +R ++ G F +H E D+R Y A
Sbjct: 157 HLATTYAAVNALVTLGGDKALSSINREKMSCFLRRMKDTSGGFR-MHDMGEMDVRACYTA 215
Query: 148 AAICFLLEDWSGMDRERAKA---YILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGF 204
++ +L + MD E + YIL+CQ+Y+GG G PGSE+HGG TYC +A++ L+
Sbjct: 216 ISVASIL---NIMDDELTQGLGDYILSCQTYEGGIGGEPGSEAHGGYTYCGLAAMILINE 272
Query: 205 IEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFW 253
++ ++L L++W + RQ + GFQGR NK D CY FW
Sbjct: 273 VDR-----------LNLDSLMNWAVHRQGVEMGFQGRTNKLVDGCYTFW 310
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 56/132 (42%), Gaps = 24/132 (18%)
Query: 188 HGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAAD--GGFQGRANKP 245
H TY AV +L +G D LS + C R+ D GGF+
Sbjct: 157 HLATTYAAVNALVTLG--GDKALSSINREKMS--------CFLRRMKDTSGGFRMHDMGE 206
Query: 246 SDT--CY-AFWIGSVLRMLGGYNLIDKEALRG---FLLTCQSQYGGFGKCPGDLPDLYHS 299
D CY A + S+L N++D E +G ++L+CQ+ GG G PG ++
Sbjct: 207 MDVRACYTAISVASIL------NIMDDELTQGLGDYILSCQTYEGGIGGEPGSEAHGGYT 260
Query: 300 FYGYTAFSLLEE 311
+ G A L+ E
Sbjct: 261 YCGLAAMILINE 272
>sp|O13782|FNTB_SCHPO Protein farnesyltransferase subunit beta OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=cpp1 PE=1 SV=1
Length = 382
Score = 94.7 bits (234), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 96/316 (30%), Positives = 146/316 (46%), Gaps = 54/316 (17%)
Query: 3 MYESLPHHYQYQEINRITLAHFAISGLCLLGALDR-VDKDAVSDWVLSLQAHPSNKADLT 61
M + LP + + +R + ++ +S L +LG LD V + A+S V L+ PS
Sbjct: 41 MLDPLPSPFTVLDASRAWMVYWELSSLAILGKLDSSVCERAISS-VRQLKG-PSG----- 93
Query: 62 NGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSILTSMR 121
GF G NG H S AS Y+ I+ + +
Sbjct: 94 -----GFCGG---------NGQDEHLLSTYASILSICLCDSTDAYSL--IERDRLYDWLF 137
Query: 122 NLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDR---ERAKAYILNCQSYDGG 178
+L+ DGSF ++ E D R VY A + L+ MD E ++ CQ+Y+GG
Sbjct: 138 SLKNPDGSFR-VNNEGESDARSVYAAVCVSSLVG--ISMDDPLFEGTLQWLCKCQTYEGG 194
Query: 179 FGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQ-AADGG 237
P +E+HGG T+CA+A++ L+G +++ ++ L +W +QRQ A G
Sbjct: 195 LSGVPYAEAHGGYTFCALAAIALLGGLDN-----------LNEIKLSTWLVQRQDPALYG 243
Query: 238 FQGRANKPSDTCYAFWIG-SVLRMLGGY---------NLI-DKEALRGFLLT-CQSQYGG 285
F GR+NK D CY++W+G S + + GY NL + E L G++L CQS GG
Sbjct: 244 FSGRSNKLVDGCYSWWVGASHVIVASGYGSASHKSLPNLFYNPEKLLGYILQCCQSTSGG 303
Query: 286 FGKCPGDLPDLYHSFY 301
P PD YH+ Y
Sbjct: 304 LRDKPPKRPDQYHTCY 319
>sp|P18898|PGTB1_YEAST Geranylgeranyl transferase type-1 subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=CDC43 PE=1
SV=2
Length = 376
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 159/344 (46%), Gaps = 41/344 (11%)
Query: 7 LPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKA--DLTNGE 64
LP +Q ++NR+ + ++ISGL + D D + ++ H D N
Sbjct: 27 LPSSHQGHDVNRMAIIFYSISGLSIF---DVNVSAKYGDHLGWMRKHYIKTVLDDTENTV 83
Query: 65 FYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQ 124
GF GS + P + N N ++ +L+ Y +D +S+ + Q
Sbjct: 84 ISGFVGSLVMNI-PHATTI---NLPNTLFALLSMIMLRDYEYFETILDKRSLARFVSKCQ 139
Query: 125 QHD-GSFM-----PIHFGAE---KDLRFVYCAAAICFLL-----EDWSG-MDRERAKAYI 169
+ D GSF+ + G+ DLRF Y A AI ++ ED+ +D E+ YI
Sbjct: 140 RPDRGSFVSCLDYKTNCGSSVDSDDLRFCYIAVAILYICGCRSKEDFDEYIDTEKLLGYI 199
Query: 170 LNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIED--NVLSKNTSSSIIDLPLLLSW 227
++ Q Y+G FG +E H G T CA+++L L+ +E + ++T + ++ +
Sbjct: 200 MSQQCYNGAFG--AHNEPHSGYTSCALSTLALLSSLEKLSDKFKEDTITWLLHRQVSSHG 257
Query: 228 CLQ---------RQAADGGFQGRANKPSDTCYAFWIGSVLRMLGG--YNLIDKEALRGFL 276
C++ Q+ DGGFQGR NK +DTCYAFW + L +L L E + +L
Sbjct: 258 CMKFESELNASYDQSDDGGFQGRENKFADTCYAFWCLNSLHLLTKDWKMLCQTELVTNYL 317
Query: 277 L--TCQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGLNPLC 318
L T ++ GGF K + DLYHS G A +L+E LC
Sbjct: 318 LDRTQKTLTGGFSKNDEEDADLYHSCLGSAALALIEGKFNGELC 361
>sp|A4JR39|GLGB_BURVG 1,4-alpha-glucan branching enzyme GlgB OS=Burkholderia
vietnamiensis (strain G4 / LMG 22486) GN=glgB PE=3 SV=1
Length = 733
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Query: 43 VSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTY-CALAIL 101
+ DWV + + ++ +G H P +HPD N + + G N S + A A+
Sbjct: 340 IVDWVPAHFPNDAHGLAQFDGSALYEHADPREGMHPDWNTCVFNLGRNEVSAFLIASALA 399
Query: 102 KAVGYNFANIDSKSILTSM-RNLQQHDGSFMPIHFGAEKDLRFV 144
A Y+ I ++ + + R+ + +G ++P +G ++L V
Sbjct: 400 WARRYHVDGIRVDAVASMLYRDYSRKEGEWVPNVYGGRENLESV 443
>sp|Q948R6|IMFS_LUFCY Isomultiflorenol synthase OS=Luffa cylindrica GN=IMS1 PE=1 SV=1
Length = 759
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 143 FVYCAAAIC-----FLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVA 197
F C IC F+ + +S ++ YI N Q+ DGG+GL G S+ T
Sbjct: 124 FYVCPLLICMYIMGFMDKVFSPEHKKEMMRYIYNHQNEDGGWGLHVGGHSNMFCTTFNYI 183
Query: 198 SLRLMG 203
SLRL+G
Sbjct: 184 SLRLLG 189
>sp|P44945|EX5C_HAEIN Exodeoxyribonuclease V gamma chain OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=recC PE=3
SV=1
Length = 1121
Score = 33.1 bits (74), Expect = 3.1, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 12/96 (12%)
Query: 217 SIIDLPLLLSWCLQRQAADGGFQGRANKPSDTC-YAFWIGSVLRMLGGYNLIDKEALRGF 275
S+ DLPL+ W D G + K D + W + RM+ GY + +++ +
Sbjct: 500 SLADLPLVREW-----VTDSGIRFGLQKNQDGINFNSWQAGLERMILGYAMREEQGIWQD 554
Query: 276 LLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEE 311
L S YG G+ G+L +TA S L E
Sbjct: 555 SLGLNSSYGLKGELAGNLSHF------FTALSALHE 584
>sp|Q0B3Y4|GLGB_BURCM 1,4-alpha-glucan branching enzyme GlgB OS=Burkholderia ambifaria
(strain ATCC BAA-244 / AMMD) GN=glgB PE=3 SV=1
Length = 733
Score = 32.0 bits (71), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 43 VSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTY-CALAIL 101
+ DWV + + ++ +G H P +HPD N + + G N S + A A+
Sbjct: 340 IVDWVPAHFPNDAHGLAQFDGSALYEHADPREGMHPDWNTCVFNLGRNEVSAFLIASALA 399
Query: 102 KAVGYNFANIDSKSILTSM-RNLQQHDGSFMP-IHFGAEK 139
A Y+ I ++ + + R+ +++G ++P IH G E
Sbjct: 400 WARRYHVDGIRVDAVASMLYRDYSRNEGEWVPNIHGGREN 439
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,714,308
Number of Sequences: 539616
Number of extensions: 5791551
Number of successful extensions: 10158
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 9948
Number of HSP's gapped (non-prelim): 59
length of query: 331
length of database: 191,569,459
effective HSP length: 118
effective length of query: 213
effective length of database: 127,894,771
effective search space: 27241586223
effective search space used: 27241586223
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)