Query 020097
Match_columns 331
No_of_seqs 205 out of 1821
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 06:59:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020097.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020097hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0367 Protein geranylgeranyl 100.0 6.3E-82 1.4E-86 561.4 22.2 319 1-330 21-340 (347)
2 PLN02710 farnesyltranstransfer 100.0 5.8E-72 1.3E-76 537.6 27.2 290 1-326 54-426 (439)
3 KOG0366 Protein geranylgeranyl 100.0 9.3E-72 2E-76 488.5 23.3 280 11-327 39-319 (329)
4 PLN03201 RAB geranylgeranyl tr 100.0 1.6E-70 3.5E-75 515.7 27.5 290 2-329 19-311 (316)
5 cd02895 GGTase-I Geranylgerany 100.0 1.4E-69 2.9E-74 507.8 28.5 291 1-309 9-307 (307)
6 COG5029 CAL1 Prenyltransferase 100.0 4.1E-69 8.8E-74 484.1 21.0 290 2-327 38-332 (342)
7 KOG0365 Beta subunit of farnes 100.0 2.6E-68 5.6E-73 482.4 18.2 287 2-324 83-404 (423)
8 cd02893 FTase Protein farnesyl 100.0 3E-66 6.5E-71 483.8 26.3 273 1-309 9-299 (299)
9 cd02894 GGTase-II Geranylgeran 100.0 6.3E-64 1.4E-68 466.6 27.9 273 1-309 11-287 (287)
10 cd02890 PTase Protein prenyltr 100.0 2.9E-59 6.3E-64 435.2 27.6 273 1-309 9-286 (286)
11 cd02893 FTase Protein farnesyl 100.0 1.5E-46 3.2E-51 351.1 24.0 236 40-312 1-240 (299)
12 PLN02710 farnesyltranstransfer 100.0 1.1E-46 2.4E-51 362.6 23.0 238 38-312 44-284 (439)
13 PLN03201 RAB geranylgeranyl tr 100.0 1.2E-45 2.6E-50 347.2 25.3 239 38-313 8-246 (316)
14 cd02894 GGTase-II Geranylgeran 100.0 2.2E-45 4.9E-50 342.0 23.6 238 39-313 2-242 (287)
15 cd02895 GGTase-I Geranylgerany 100.0 3.3E-45 7.1E-50 343.1 23.4 218 86-312 22-261 (307)
16 cd02890 PTase Protein prenyltr 100.0 3E-43 6.5E-48 327.6 23.5 215 86-312 22-240 (286)
17 KOG0366 Protein geranylgeranyl 100.0 8.6E-35 1.9E-39 255.7 17.7 211 89-312 45-255 (329)
18 COG5029 CAL1 Prenyltransferase 100.0 7.7E-34 1.7E-38 256.2 14.9 211 89-311 53-267 (342)
19 KOG0365 Beta subunit of farnes 100.0 2.1E-31 4.6E-36 242.3 15.3 215 85-311 94-312 (423)
20 cd00688 ISOPREN_C2_like This g 100.0 5.8E-30 1.3E-34 235.3 24.7 260 13-308 21-299 (300)
21 KOG0367 Protein geranylgeranyl 100.0 3.4E-28 7.4E-33 217.6 20.3 216 86-313 34-274 (347)
22 cd00688 ISOPREN_C2_like This g 99.9 5.5E-23 1.2E-27 188.9 22.3 212 89-312 25-254 (300)
23 cd02889 SQCY Squalene cyclase 99.9 2.7E-20 5.8E-25 177.6 22.3 240 41-312 2-294 (348)
24 TIGR01507 hopene_cyclase squal 99.9 6.6E-20 1.4E-24 186.8 24.3 258 21-313 269-575 (635)
25 COG1689 Uncharacterized protei 99.9 2E-20 4.3E-25 161.1 17.0 226 37-310 5-272 (274)
26 TIGR01507 hopene_cyclase squal 99.9 1.1E-19 2.4E-24 185.2 25.0 249 16-289 313-599 (635)
27 cd02889 SQCY Squalene cyclase 99.9 6.7E-20 1.5E-24 174.8 20.8 248 17-290 23-320 (348)
28 TIGR03463 osq_cycl 2,3-oxidosq 99.9 3.5E-20 7.7E-25 188.9 19.8 265 22-313 259-581 (634)
29 TIGR03463 osq_cycl 2,3-oxidosq 99.8 1.9E-20 4.1E-25 190.9 15.5 182 40-242 402-606 (634)
30 PLN02993 lupeol synthase 99.8 1.9E-20 4.2E-25 191.4 15.1 182 40-240 515-722 (763)
31 cd02892 SQCY_1 Squalene cyclas 99.8 6.2E-19 1.3E-23 180.7 24.2 264 21-312 261-580 (634)
32 cd02892 SQCY_1 Squalene cyclas 99.8 3.6E-19 7.7E-24 182.5 21.0 253 13-290 302-606 (634)
33 PLN03012 Camelliol C synthase 99.8 7.9E-20 1.7E-24 186.5 14.7 182 40-240 515-722 (759)
34 PLN02993 lupeol synthase 99.8 9.8E-19 2.1E-23 178.9 21.9 220 89-312 416-696 (763)
35 PF13249 Prenyltrans_2: Prenyl 99.8 4.2E-20 9.1E-25 147.8 9.0 109 166-288 1-113 (113)
36 TIGR01787 squalene_cyclas squa 99.8 1.4E-18 2.9E-23 177.1 21.1 257 16-290 293-590 (621)
37 PLN03012 Camelliol C synthase 99.8 2.5E-18 5.5E-23 175.6 22.5 218 89-313 416-697 (759)
38 TIGR01787 squalene_cyclas squa 99.8 8.3E-18 1.8E-22 171.4 20.8 216 89-313 294-565 (621)
39 PF13249 Prenyltrans_2: Prenyl 99.8 1.3E-18 2.9E-23 139.1 9.6 110 44-181 1-113 (113)
40 cd02897 A2M_2 Proteins similar 99.7 2.4E-14 5.2E-19 133.7 22.5 252 3-307 7-290 (292)
41 cd02896 complement_C3_C4_C5 Pr 99.6 8.9E-14 1.9E-18 130.3 22.4 248 3-307 7-295 (297)
42 COG1689 Uncharacterized protei 99.6 6.9E-14 1.5E-18 121.0 13.3 155 12-202 116-271 (274)
43 PF00432 Prenyltrans: Prenyltr 99.4 5.6E-13 1.2E-17 88.7 5.2 44 160-203 1-44 (44)
44 PF00432 Prenyltrans: Prenyltr 99.4 1.1E-12 2.4E-17 87.2 5.0 44 267-310 1-44 (44)
45 KOG0497 Oxidosqualene-lanoster 99.3 9.3E-12 2E-16 123.6 12.2 181 38-240 509-721 (760)
46 cd02897 A2M_2 Proteins similar 99.3 2.1E-10 4.7E-15 107.1 17.9 198 90-311 22-253 (292)
47 cd02896 complement_C3_C4_C5 Pr 99.3 2E-10 4.3E-15 107.7 16.5 179 114-310 55-259 (297)
48 KOG0497 Oxidosqualene-lanoster 99.3 6.1E-11 1.3E-15 117.9 13.3 222 86-315 413-698 (760)
49 cd02891 A2M_like Proteins simi 99.2 6.8E-09 1.5E-13 96.0 22.9 250 3-307 7-280 (282)
50 PF13243 Prenyltrans_1: Prenyl 99.2 1.4E-11 3E-16 97.9 3.0 105 114-233 2-107 (109)
51 PF13243 Prenyltrans_1: Prenyl 99.1 1.2E-10 2.5E-15 92.6 3.9 106 162-281 1-107 (109)
52 PF07678 A2M_comp: A-macroglob 98.9 2.4E-08 5.3E-13 91.1 13.0 196 61-307 12-242 (246)
53 cd02891 A2M_like Proteins simi 98.9 1.2E-07 2.7E-12 87.6 16.4 171 114-307 52-241 (282)
54 COG1657 SqhC Squalene cyclase 98.6 3.6E-08 7.8E-13 97.1 5.0 184 37-242 280-482 (517)
55 COG1657 SqhC Squalene cyclase 98.1 4.6E-06 1E-10 82.4 6.9 156 158-324 279-468 (517)
56 PF07678 A2M_comp: A-macroglob 98.1 7.1E-05 1.5E-09 68.3 12.6 183 12-240 20-230 (246)
57 PLN02592 ent-copalyl diphospha 97.4 0.0041 8.9E-08 65.3 15.5 116 169-313 258-377 (800)
58 PLN02279 ent-kaur-16-ene synth 97.0 0.019 4.2E-07 60.4 15.3 113 169-314 218-333 (784)
59 TIGR02474 pec_lyase pectate ly 96.7 0.0042 9.1E-08 57.6 6.9 105 138-242 40-160 (290)
60 KOG1366 Alpha-macroglobulin [P 96.1 0.069 1.5E-06 59.7 13.0 114 3-132 929-1045(1436)
61 TIGR02474 pec_lyase pectate ly 95.5 0.16 3.4E-06 47.3 10.7 114 114-235 70-222 (290)
62 PF05817 Ribophorin_II: Oligos 93.5 11 0.00024 39.2 20.3 133 15-204 45-178 (636)
63 PF01122 Cobalamin_bind: Eukar 90.1 0.7 1.5E-05 43.8 6.0 95 162-287 217-311 (326)
64 PF05817 Ribophorin_II: Oligos 88.3 18 0.00038 37.7 15.2 177 18-263 86-269 (636)
65 PLN02592 ent-copalyl diphospha 87.0 1.7 3.7E-05 46.1 7.0 42 161-202 116-159 (800)
66 PLN02279 ent-kaur-16-ene synth 82.7 2.6 5.7E-05 44.8 6.1 46 160-205 73-122 (784)
67 PF10022 DUF2264: Uncharacteri 77.4 50 0.0011 31.9 12.5 160 96-262 160-345 (361)
68 KOG1366 Alpha-macroglobulin [P 76.6 6.7 0.00015 44.5 7.0 90 142-239 946-1044(1436)
69 PF09492 Pec_lyase: Pectic aci 66.1 5.7 0.00012 37.1 3.1 144 139-282 36-216 (289)
70 PF01122 Cobalamin_bind: Eukar 63.9 7.9 0.00017 36.8 3.6 75 90-181 236-312 (326)
71 PF09492 Pec_lyase: Pectic aci 61.0 13 0.00027 34.8 4.3 118 114-239 65-221 (289)
72 TIGR01577 oligosac_amyl oligos 60.1 2.2E+02 0.0047 29.5 16.3 36 15-52 291-328 (616)
73 TIGR01577 oligosac_amyl oligos 37.0 4.9E+02 0.011 26.9 15.2 77 165-241 502-585 (616)
74 KOG2244 Highly conserved prote 28.2 26 0.00056 35.6 0.8 66 65-133 314-382 (786)
75 PF14160 FAM110_C: Centrosome- 20.7 54 0.0012 26.1 1.2 12 41-52 98-109 (111)
No 1
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-82 Score=561.40 Aligned_cols=319 Identities=49% Similarity=0.860 Sum_probs=296.7
Q ss_pred CccccCCCcchhhhhhhhhHHHHHhhhHHhhcCCCCCcChHHHHHHHHHhccCCCCCCCCCCCCccccCCCCCCCCCCCC
Q 020097 1 MMMYESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPDD 80 (331)
Q Consensus 1 ~~~l~~lp~~~~~~d~~r~~~~y~~l~~L~lL~~~~~~~~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~~~~~ 80 (331)
+|||+.||++|+++|.||++++||++++|++||+++..+++++|+||++.|+.|... .+--++||.|+.+..+|.++
T Consensus 21 ~RhL~llP~~y~shd~~R~tiafFaisGLd~L~~ld~v~k~d~i~Wiy~~~v~~~dr---~~~k~~GF~Gsr~~~~p~~~ 97 (347)
T KOG0367|consen 21 ERHLQLLPSPYQSHDTNRLTIAFFAISGLDLLDALDSVDKDDIIEWIYKLQVTPTDR---TNLKICGFRGSRSMNIPIAT 97 (347)
T ss_pred HHHHHhCCCcccccccchHHHHHHHHcchhhhhhhhccchhHHHHHHHhceeccccC---CCceeeeeeeeccccCCCCC
Confidence 489999999999999999999999999999999999999999999999999977521 22238999999999888775
Q ss_pred CCCccCCCCcHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhccCCCCCCcccccCCccChhHHHHHHHHHHHhCCCCcc
Q 020097 81 NGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGM 160 (331)
Q Consensus 81 ~~~~~~~~~~l~~Ty~Al~~L~~lg~~~~~~~~~~~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~ 160 (331)
. .+|.||+++||.++.+|+.||++++++||+.+++++..+|++||+|.+.+.|+|+|||++|||+++++||+.++.+
T Consensus 98 ~---~~~~~~lA~Ty~sl~~L~~lGddLsrlDrksil~~v~~~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ymLd~~s~i 174 (347)
T KOG0367|consen 98 N---TYNEPHLAMTYTSLACLVILGDDLSRLDRKSILRFVSACQRPDGSFVSINVGSESDMRFVYCAVAICYMLDFWSGI 174 (347)
T ss_pred C---CCcchhHHHHHHHHHHHHHHcchHhhhhHHHHHHHHHHhcCCCCceeecCCCCchhhHHHHHHHHHHHHhcccccc
Confidence 3 5789999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred cHHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCccccC
Q 020097 161 DRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQG 240 (331)
Q Consensus 161 ~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~g 240 (331)
|+++++.||++||++|||||..|+.|||+|+||||||+|++++++-++.+ ++..+++++++|+.+||..+|||+|
T Consensus 175 D~ek~~~yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~~~l~~e~l-----~~~~~~erlirWli~RQ~~sgGfqG 249 (347)
T KOG0367|consen 175 DKEKLIGYIRSSQRYDGGFGQHPGGESHGGATFCALASLALMGKLIPEEL-----SNTSKVERLIRWLIQRQVSSGGFQG 249 (347)
T ss_pred CHHHHHHHHHHhhccccccccCCCCCCCcchhHHHHHHHHHHhhhhhhhh-----ccccCHHHHHHHHHHHhhccCCcCC
Confidence 99999999999999999999999999999999999999999998822211 1245689999999999999999999
Q ss_pred CCCCCCCcchhhHHHHHHHHhCCCCCCCHHHHHHHHHhccCC-CCCcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCc
Q 020097 241 RANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQ-YGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGLNPLCA 319 (331)
Q Consensus 241 r~~k~~D~~yt~~~~a~L~lL~~~~~~~~~~~~~~L~~~Q~~-~GGf~~~p~~~~D~~hT~~al~aLsll~~~~~~~~~~ 319 (331)
|+||++||||+||++++|++|+...++|.+.+.+||.+||.. .|||++.|+..||++|||++++||++++++++.||+|
T Consensus 250 R~NKp~DTCYaFWigasLklL~~~~~~d~~~lr~fll~~Q~~~iGGFsK~P~~~pD~~HsylG~~alal~ee~~~~~v~p 329 (347)
T KOG0367|consen 250 RTNKPVDTCYAFWIGASLKLLDADWLIDKQVLRKFLLSTQDKLIGGFSKWPEEDPDLLHSYLGLAALALLEEKGLSPVCP 329 (347)
T ss_pred CCCCCchhHHHHHHHHHHHHccchHhhhHHHHHHHHHHhhhhhcCcccCCCccCchHHHHHHHHHHHHHhcCCCCCCCCc
Confidence 999999999999999999999999999999999999999998 6999999999999999999999999999999999999
Q ss_pred cccccccccCC
Q 020097 320 ELGMTEFSALG 330 (331)
Q Consensus 320 ~~~~~~~~~~~ 330 (331)
.++||.++++.
T Consensus 330 ~l~~s~~~~~r 340 (347)
T KOG0367|consen 330 SLNMSMRASER 340 (347)
T ss_pred cccccHHHHHH
Confidence 99999987653
No 2
>PLN02710 farnesyltranstransferase subunit beta
Probab=100.00 E-value=5.8e-72 Score=537.59 Aligned_cols=290 Identities=32% Similarity=0.576 Sum_probs=262.4
Q ss_pred CccccCCCcchhhhhhhhhHHHHHhhhHHhhcCC-CCCcChHHHHHHHHHhccCCCCCCCCCCCCccccCCCCCCCCCCC
Q 020097 1 MMMYESLPHHYQYQEINRITLAHFAISGLCLLGA-LDRVDKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPD 79 (331)
Q Consensus 1 ~~~l~~lp~~~~~~d~~r~~~~y~~l~~L~lL~~-~~~~~~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~~~~ 79 (331)
+|+|+.||++|+++|+||+|++||+|++|+|||. .+.++++++++||++||+ +||||+|..++
T Consensus 54 ~~~l~~lp~~~~~lDa~r~~~~Yw~L~sL~lLg~~l~~~~~~~ii~~l~~cQ~--------~dGGFgg~pg~-------- 117 (439)
T PLN02710 54 TRGLRQLGPSFSVLDANRPWLCYWILHSIALLGESLDDELENDTIDFLSRCQD--------PNGGYGGGPGQ-------- 117 (439)
T ss_pred HHHhhcCChhhhhhhhhhHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhcC--------CCcCCCCCCCC--------
Confidence 4789999999999999999999999999999998 455678999999999996 46766665543
Q ss_pred CCCCccCCCCcHHHHHHHHHHHHHhCCC--CCcccHHHHHHHHHhccCCCCCCcccccCCccChhHHHHHHHHHHHhCCC
Q 020097 80 DNGVLMHNGSNLASTYCALAILKAVGYN--FANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDW 157 (331)
Q Consensus 80 ~~~~~~~~~~~l~~Ty~Al~~L~~lg~~--~~~~~~~~~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~ 157 (331)
.+|+..||+||++|.+||.+ ++.+||+++++||.++|++||+|.. ..++|.|+|+||||++++.+|+.+
T Consensus 118 --------~~hl~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s~q~~dGgF~~-~~~gE~D~R~tYcAlail~LL~~l 188 (439)
T PLN02710 118 --------LPHLATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDPSGGFRM-HDGGEMDVRACYTAISVASLLNIL 188 (439)
T ss_pred --------CccHHHHHHHHHHHHHcCCchhhcccCHHHHHHHHHHcCCCCCCccc-CCCCCCCcCCcHHHHHHHHHhCcC
Confidence 37999999999999999964 7889999999999999999999986 457999999999999999999988
Q ss_pred CcccHHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCcc
Q 020097 158 SGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGG 237 (331)
Q Consensus 158 ~~~~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGG 237 (331)
+.++.+++++||++||++||||++.|+.|+|+++|||||++|.+||+.+ .+|.+++++||++||..+||
T Consensus 189 ~~~~~e~~~~~I~scQ~~dGGF~g~P~~EaH~gyTfcavAsL~LLg~l~-----------~id~~~l~~WL~~rQ~~~GG 257 (439)
T PLN02710 189 DDELVKGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVD-----------RLDLPSLINWVVFRQGVEGG 257 (439)
T ss_pred chhhHHHHHHHHHHhCCCCCCCCCCCCCCCchHHHHHHHHHHHHcCCcc-----------ccCHHHHHHHHHHhcCcCCC
Confidence 8889999999999999999999999999999999999999999999876 67999999999999999999
Q ss_pred ccCCCCCCCCcchhhHHHHHHHHhCCCC----------------------------------------------------
Q 020097 238 FQGRANKPSDTCYAFWIGSVLRMLGGYN---------------------------------------------------- 265 (331)
Q Consensus 238 f~gr~~k~~D~~yt~~~~a~L~lL~~~~---------------------------------------------------- 265 (331)
|+|||||.+|+|||||++++|++|+...
T Consensus 258 F~GR~nKl~D~CYSfW~~a~L~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (439)
T PLN02710 258 FQGRTNKLVDGCYSFWQGGVFALLQQLVTIVDEQLQTGGSSIMFEELEDDACETSSSGKDDAGDTDSADYSKVGFDFIKA 337 (439)
T ss_pred cCCCCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999998531
Q ss_pred -------CCCHHHHHHHHHhc-cCCCCCcCCCCCCCCCHHHHHHHHHHHHhcCCC--------------------CCCCC
Q 020097 266 -------LIDKEALRGFLLTC-QSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEP--------------------GLNPL 317 (331)
Q Consensus 266 -------~~~~~~~~~~L~~~-Q~~~GGf~~~p~~~~D~~hT~~al~aLsll~~~--------------------~~~~~ 317 (331)
++|.+++.+||+.| |..+|||+++|++.||+|||+|+|++||++++. -+.++
T Consensus 338 ~~~~~~~~~d~~aL~~yIL~c~q~~~GG~~DkPgk~~D~YHT~y~LsGLSl~q~~~~~~~~~~~~~~~~~g~~~n~l~~~ 417 (439)
T PLN02710 338 SNQQMGPLFHSIALQQYILLCSQVLDGGLRDKPGKSRDYYHTCYCLSGLSVAQYSASKDEDSPPLPRHVLGPYSNLLEPI 417 (439)
T ss_pred cccccccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHHhhcccccCCCCCccccccCCCccccCCC
Confidence 36788999998765 556899999999999999999999999999763 26788
Q ss_pred Ccccccccc
Q 020097 318 CAELGMTEF 326 (331)
Q Consensus 318 ~~~~~~~~~ 326 (331)
+|-++|+..
T Consensus 418 ~p~~ni~~~ 426 (439)
T PLN02710 418 HPLYNVVLD 426 (439)
T ss_pred CCccCCCHH
Confidence 888888754
No 3
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-72 Score=488.47 Aligned_cols=280 Identities=36% Similarity=0.691 Sum_probs=266.1
Q ss_pred hhhhhhhhhHHHHHhhhHHhhcCCCCCcChHHHHHHHHHhccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCCCc
Q 020097 11 YQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSN 90 (331)
Q Consensus 11 ~~~~d~~r~~~~y~~l~~L~lL~~~~~~~~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~~~~~~~~~~~~~~~ 90 (331)
|--.|.-||+.+||++.+|+||++++..++|+++.||++||+ ++|||+++.|+. ||
T Consensus 39 y~l~EhlRmsgiYWg~tal~ll~~le~~~~eeiv~~v~~C~~--------~~GGfa~~~Ghd----------------~h 94 (329)
T KOG0366|consen 39 YCLTEHLRMSGIYWGLTALDLLGQLERMSREEIVSFVLSCQH--------EDGGFAGCPGHD----------------PH 94 (329)
T ss_pred HHHHhHhhhcchhhhhhHHHHhcccchhhHHHHHHHHHheec--------CCCCcCCCCCCC----------------hH
Confidence 445788999999999999999999999999999999999997 578888887765 79
Q ss_pred HHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhccCCCCCCcccccCCccChhHHHHHHHHHHHhCCCCcccHHHHHHHHH
Q 020097 91 LASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYIL 170 (331)
Q Consensus 91 l~~Ty~Al~~L~~lg~~~~~~~~~~~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~~~~I~ 170 (331)
+..|..|||+|.++. .++.+|++++..||..+|++||+|....| ||.|+|++|||++.|++|+.++.++++++|+|++
T Consensus 95 ll~TlsAvQiL~~yd-si~~~d~d~v~~yi~gLq~edGsF~gD~w-GEvDTRfs~~av~~L~lLg~ld~~nve~aVd~~~ 172 (329)
T KOG0366|consen 95 LLYTLSAVQILALYD-SINVLDRDKVASYIKGLQQEDGSFSGDIW-GEVDTRFSYCAVACLALLGKLDTINVEKAVDFVL 172 (329)
T ss_pred HHHHHHHHHHHHHHc-ccccccHHHHHHHHHhhcCcCCcccCCcc-cccchhhhHHHHHHHHHHhhHHHhhHHHHHHHHH
Confidence 999999999999997 57778999999999999999999987655 9999999999999999999999999999999999
Q ss_pred hcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCccccCCCCCCCCcch
Q 020097 171 NCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCY 250 (331)
Q Consensus 171 ~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~~y 250 (331)
+|.|.|||||..||.|||++..||++++|+++|+++ .+|.+.+..||.+||.+.||.+|||.|.+|+||
T Consensus 173 ~CyN~DGGFG~~pGaESHagqifcCvgaLai~~~L~-----------~vd~d~lgwwlceRQ~~sGGLNGRpeKlpDVCY 241 (329)
T KOG0366|consen 173 SCYNFDGGFGCRPGAESHAGQIFCCVGALAITGKLH-----------LVDRDLLGWWLCERQLPSGGLNGRPEKLPDVCY 241 (329)
T ss_pred hhcccCCCcCCCCCcccccceehhhHHHHHHccchh-----------hcCHHHHHHHHHhccCCCCCCCCCcccCcchhh
Confidence 999999999999999999999999999999999998 789999999999999999999999999999999
Q ss_pred hhHHHHHHHHhCCCCCCCHHHHHHHHHhccC-CCCCcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCccccccccc
Q 020097 251 AFWIGSVLRMLGGYNLIDKEALRGFLLTCQS-QYGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGLNPLCAELGMTEFS 327 (331)
Q Consensus 251 t~~~~a~L~lL~~~~~~~~~~~~~~L~~~Q~-~~GGf~~~p~~~~D~~hT~~al~aLsll~~~~~~~~~~~~~~~~~~ 327 (331)
+||++++|+++|+.++||.+++++||+.||. +.|||+++|++.+|++||++++++||++|++++++|||.+|||+.-
T Consensus 242 SwWvlsSL~iigrl~wId~ekL~~FIl~cQd~~~GGfsDRpgd~~D~fHt~FgiAGLSLlg~~~l~~idP~fcmp~~v 319 (329)
T KOG0366|consen 242 SWWVLSSLAIIGRLHWIDREKLTKFILACQDEETGGFSDRPGDEVDIFHTLFGIAGLSLLGYPGLKPIDPIFCMPKEV 319 (329)
T ss_pred HHHHHhHHHHhhhhhhccHHHHHHHHHhcCCCCCCCcCCCCCCcccHHHHHHHHhhHhhhCCCCceecCCcccCcHHH
Confidence 9999999999999999999999999999998 5999999999999999999999999999999999999999999754
No 4
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=100.00 E-value=1.6e-70 Score=515.68 Aligned_cols=290 Identities=35% Similarity=0.630 Sum_probs=268.1
Q ss_pred ccccCCCcchhhh--hhhhhHHHHHhhhHHhhcCCCCCcChHHHHHHHHHhccCCCCCCCCCCCCccccCCCCCCCCCCC
Q 020097 2 MMYESLPHHYQYQ--EINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPD 79 (331)
Q Consensus 2 ~~l~~lp~~~~~~--d~~r~~~~y~~l~~L~lL~~~~~~~~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~~~~ 79 (331)
|+++ +|.+|++. |++|++.+||+|++|++|+.++.++++++++||++||+ +||||+++.++
T Consensus 19 ~~~~-~~~~~~~~~~~~~r~~~~y~~l~~L~lL~~~~~~~~~~~i~~l~~cq~--------~~GGF~~~~~~-------- 81 (316)
T PLN03201 19 SLEK-KKDSFESVVMEHLRMNGAYWGLTALDLLGKLDDVDRDEVVSWVMRCQH--------ESGGFGGNTGH-------- 81 (316)
T ss_pred HhCC-CCCCccccccccchHHHHHHHHHHHHHhCCCccccHHHHHHHHHHhcC--------CCCCcCCCCCC--------
Confidence 4444 89999876 89999999999999999999888899999999999997 46777665432
Q ss_pred CCCCccCCCCcHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhccCCCCCCcccccCCccChhHHHHHHHHHHHhCCCCc
Q 020097 80 DNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSG 159 (331)
Q Consensus 80 ~~~~~~~~~~~l~~Ty~Al~~L~~lg~~~~~~~~~~~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~ 159 (331)
.+|+..||+|+++|.+++ .++.+|++++++||.++|++||||... .+++.|+|+||||++++.+|+..+.
T Consensus 82 --------~~h~~~Ty~al~~L~ll~-~~~~id~~~~~~~l~s~Q~~dGgF~~~-~~ge~D~r~ty~a~a~l~LL~~~~~ 151 (316)
T PLN03201 82 --------DPHILYTLSAVQILALFD-RLDLLDADKVASYVAGLQNEDGSFSGD-EWGEIDTRFSYCALCCLSLLKRLDK 151 (316)
T ss_pred --------cccHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHhcCCCCCccCC-CCCCccHHHHHHHHHHHHHhCccch
Confidence 379999999999999996 578899999999999999999999864 4589999999999999999998777
Q ss_pred ccHHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCcccc
Q 020097 160 MDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQ 239 (331)
Q Consensus 160 ~~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~ 239 (331)
++++++++||++||++||||+..|+.|+|+++|||||++|.++|..+ .+|.+++++||.+||..+|||+
T Consensus 152 i~~~~~~~~i~scq~~dGGF~~~p~~esh~g~T~caiaaL~llg~~~-----------~~d~~~l~~wL~~rQ~~~GGf~ 220 (316)
T PLN03201 152 INVEKAVDYIVSCKNFDGGFGCTPGGESHAGQIFCCVGALAITGSLH-----------HVDKDLLGWWLCERQVKSGGLN 220 (316)
T ss_pred hHHHHHHHHHHHhcCCCCCcCCCCCCCCccceehHHHHHHHHcCccc-----------cCCHHHHHHHHHHhCCCCCCcC
Confidence 89999999999999999999999999999999999999999999876 5788999999999999999999
Q ss_pred CCCCCCCCcchhhHHHHHHHHhCCCCCCCHHHHHHHHHhccCC-CCCcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCC
Q 020097 240 GRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQ-YGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGLNPLC 318 (331)
Q Consensus 240 gr~~k~~D~~yt~~~~a~L~lL~~~~~~~~~~~~~~L~~~Q~~-~GGf~~~p~~~~D~~hT~~al~aLsll~~~~~~~~~ 318 (331)
|||||++|+|||||++++|++|+...++|.+++.+||++||+. .|||+++|++.||++||||+|++|++++++++.+||
T Consensus 221 grp~k~~D~cys~w~~a~L~ll~~~~~~d~~~l~~~i~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~lsl~~~~~l~~~~ 300 (316)
T PLN03201 221 GRPEKLPDVCYSWWVLSSLIIIDRVHWIDKDKLAKFILDCQDDENGGISDRPDDAVDVFHTFFGVAGLSLLGYPGLKPID 300 (316)
T ss_pred CCCCCCCchHHHHHHHHHHHHhccccccCHHHHHHHHHHHcCCCCCCcCCCcCCCCChhHHHHHHHHHHhcCCCCCCCCC
Confidence 9999999999999999999999998999999999999999986 899999999999999999999999999999999999
Q ss_pred ccccccccccC
Q 020097 319 AELGMTEFSAL 329 (331)
Q Consensus 319 ~~~~~~~~~~~ 329 (331)
|.+|||.+...
T Consensus 301 p~~~~~~~~~~ 311 (316)
T PLN03201 301 PAYALPVDVVN 311 (316)
T ss_pred CcccCCHHHHH
Confidence 99999987654
No 5
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=100.00 E-value=1.4e-69 Score=507.82 Aligned_cols=291 Identities=46% Similarity=0.805 Sum_probs=257.0
Q ss_pred CccccCCCcchhhhhhhhhHHHHHhhhHHhhcCCCC---CcChHHHHHHHHHhccCCCCCCCCCCCCccccCCCCCCCCC
Q 020097 1 MMMYESLPHHYQYQEINRITLAHFAISGLCLLGALD---RVDKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLH 77 (331)
Q Consensus 1 ~~~l~~lp~~~~~~d~~r~~~~y~~l~~L~lL~~~~---~~~~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~~ 77 (331)
+|||+.||++|+++|++|+|++||+|++|++|+.+. .++++++++||++||+. . +.+||||+|..+... +
T Consensus 9 ~~~l~~lp~~~~~~d~~r~~~~yf~l~~L~lL~~~~~~~~~~r~~~i~~i~~~q~~-~---~~~~GgF~~~~~~~~---~ 81 (307)
T cd02895 9 QRCLQLLPSSYQSLDTNRLTIAFFALSGLDLLGALDSILVEEKDDIIEWIYSLQVL-S---NLPRGGFRGSSTLGL---P 81 (307)
T ss_pred HHHhhhCCchhhhhhhhhHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhcc-c---CCCCCCCCCCCCCcc---c
Confidence 489999999999999999999999999999999875 46789999999999941 1 114565555443211 1
Q ss_pred CCCCCCccCCCCcHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhccCCCCCCcccc--cCCccChhHHHHHHHHHHHhC
Q 020097 78 PDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIH--FGAEKDLRFVYCAAAICFLLE 155 (331)
Q Consensus 78 ~~~~~~~~~~~~~l~~Ty~Al~~L~~lg~~~~~~~~~~~~~~l~~~q~~dG~f~~~~--~~~~~d~~~ty~al~~l~lL~ 155 (331)
.....++.+|++.||+|+++|.+|+++++.+||+++++||+++|++||+|...+ .++|.|+|+||||++++.+|+
T Consensus 82 ---~~~~~~~~~~l~~ty~Al~~L~lL~~~~~~idr~~i~~~l~~~q~~dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~ 158 (307)
T cd02895 82 ---GTASKYDTGNLAMTYFALLSLLILGDDLSRVDRKAILNFLSKLQLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLD 158 (307)
T ss_pred ---cccccCCcccHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHhCCCCCCccCCcCCcCCCccHHHHHHHHHHHHHhC
Confidence 112246789999999999999999988878999999999999999999998764 368999999999999999999
Q ss_pred CCC--cccHHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCC
Q 020097 156 DWS--GMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQA 233 (331)
Q Consensus 156 ~~~--~~~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~ 233 (331)
..+ .++++++++||++||++||||+..|+.|+|+++||||+++|.+++..+. ...++.+++++||++||+
T Consensus 159 ~~~~~~~d~~~li~~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~lL~~~~~--------~~~~~~~~l~~wL~~rQ~ 230 (307)
T cd02895 159 DWSEEDIDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLLGKLEE--------LSEKFLERLKRWLVHRQV 230 (307)
T ss_pred CCccccccHHHHHHHHHHccCCCCCccCCCCCCccccHHHHHHHHHHHcCCccc--------cccccHHHHHHHHHHhcC
Confidence 765 5789999999999999999999999999999999999999999998641 014789999999999999
Q ss_pred CCccccCCCCCCCCcchhhHHHHHHHHhCCCCCCCHHHHHHHHHhccCC-CCCcCCCCCCCCCHHHHHHHHHHHHhc
Q 020097 234 ADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQ-YGGFGKCPGDLPDLYHSFYGYTAFSLL 309 (331)
Q Consensus 234 ~dGGf~gr~~k~~D~~yt~~~~a~L~lL~~~~~~~~~~~~~~L~~~Q~~-~GGf~~~p~~~~D~~hT~~al~aLsll 309 (331)
.+|||+|||+|++|+|||||++++|++|+..+++|++++.+||.+||+. +|||+++|++.||++||||+|++|+++
T Consensus 231 ~~GGF~gr~~k~~D~cysfw~~a~L~iL~~~~~id~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht~~~la~Lsl~ 307 (307)
T cd02895 231 SGTGFNGRPNKPADTCYSFWVGASLKLLDAFQLIDFEKNRNYLLSTQQSLVGGFAKNPDSHPDPLHSYLGLAALSLI 307 (307)
T ss_pred CCCCcCCCCCCCCccchhhHHHHHHHHcCcccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCChhHHHHHHHHHHhC
Confidence 9999999999999999999999999999998899999999999988865 999999999999999999999999975
No 6
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-69 Score=484.13 Aligned_cols=290 Identities=36% Similarity=0.616 Sum_probs=268.7
Q ss_pred ccccCCCcchhhhhhhhhHHHHHhhhHHhhcCCCC-CcChHHHHHHHHHhccCCCCCCCCCCCCccccCCCCCCCCCCCC
Q 020097 2 MMYESLPHHYQYQEINRITLAHFAISGLCLLGALD-RVDKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPDD 80 (331)
Q Consensus 2 ~~l~~lp~~~~~~d~~r~~~~y~~l~~L~lL~~~~-~~~~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~~~~~ 80 (331)
|+...+|..|.-.|++|+|.+||.++++.+|+..+ ..++|+++.+|++|+. +.|+|+++.++.
T Consensus 38 ~~~~~~~~~~~l~~~~~~~~iyw~~~sl~~l~~~~~~~~~er~i~~v~~~~~--------~~G~f~~~~g~~-------- 101 (342)
T COG5029 38 RMAITFPSLFGLLEASRLNTIYWGDNSLWMLKRYDKTVDKERKISFVLGCVG--------PSGGFGGGPGQD-------- 101 (342)
T ss_pred hhhccccchhhhhhhcchhhhhhccchHHHhcCcchhhhhhhhheeeeeeec--------CCCCcCCCCccc--------
Confidence 44566777788889999999999999999999987 6789999999999996 347777777765
Q ss_pred CCCccCCCCcHHHHHHHHHHHHHhC--CCCCcccHHHHHHHHHhccCCCCCCcccccCCccChhHHHHHHHHHHHhCCCC
Q 020097 81 NGVLMHNGSNLASTYCALAILKAVG--YNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWS 158 (331)
Q Consensus 81 ~~~~~~~~~~l~~Ty~Al~~L~~lg--~~~~~~~~~~~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~ 158 (331)
+|+.+||+||++|.+++ +-+++++|+.+.+||..+|+|||+|....+ +|.|.|++|+|+.++++++..+
T Consensus 102 --------~hL~sT~~Ai~~L~~~d~~~~~~~idr~~l~~fi~~lk~pdGsF~~~~~-gevDtr~~Y~al~ilsllg~~~ 172 (342)
T COG5029 102 --------SHLASTVFAIQSLAMLDSLDVLSRIDRDSLASFISGLKNPDGSFRSDLE-GEVDTRFLYIALSILSLLGDLD 172 (342)
T ss_pred --------hhHHHHHHHHHHHHHhccccccchhhHHHHHHHHHhccCCCCceecccC-CcchHHHHHHHHHHHHHHhhcc
Confidence 69999999999999998 456788899999999999999999987655 9999999999999999999888
Q ss_pred cccHHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCC-HHHHHHHHHhcCCCCcc
Q 020097 159 GMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIID-LPLLLSWCLQRQAADGG 237 (331)
Q Consensus 159 ~~~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~-~~~~~~wL~~~Q~~dGG 237 (331)
..+.+.+++||++|||+|||||..|+.|||+++||||+++|+++++++ .++ ++++++||.+||.+.||
T Consensus 173 ~~~~e~~vdyl~kCqnyeGGFg~~p~aEaHag~tFcalaalalL~~Ld-----------~ls~~E~l~~Wl~~RQ~ssgG 241 (342)
T COG5029 173 KELFEGAVDYLKKCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLD-----------KLSDVEKLIRWLAERQLSSGG 241 (342)
T ss_pred hhhhHHHHHHHHHhhccCCcccCCCchhhccchHHHHHHHHHHHhccc-----------ccchHHHHHHHHHHcccccCC
Confidence 899999999999999999999999999999999999999999999997 445 79999999999999999
Q ss_pred ccCCCCCCCCcchhhHHHHHHHHhCCCCCCCHHHHHHHHHhccCC-CCCcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCC
Q 020097 238 FQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQ-YGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGLNP 316 (331)
Q Consensus 238 f~gr~~k~~D~~yt~~~~a~L~lL~~~~~~~~~~~~~~L~~~Q~~-~GGf~~~p~~~~D~~hT~~al~aLsll~~~~~~~ 316 (331)
|+||+||.+|+||+||++++|++++...++|.+++++||+.||.. .|||+++|++.||+|||+++|++|++++.+.+.|
T Consensus 242 l~GR~nKl~D~CYs~WvlsSl~il~~~~~in~e~L~~yiL~c~q~~sGGfsdrp~~~~D~yHt~~~lagLsl~~~k~l~~ 321 (342)
T COG5029 242 LNGRSNKLVDTCYSFWVLSSLAILGKLDFINTEELTDYILDCQQETSGGFSDRPGEEPDVYHTCFGLAGLSLIEYKYLNP 321 (342)
T ss_pred cCCCcccCccchhhhhhcchHHhcchhhhcCHHHHHHHHHhhcccCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCCC
Confidence 999999999999999999999999999999999999999887776 9999999999999999999999999999999999
Q ss_pred CCccccccccc
Q 020097 317 LCAELGMTEFS 327 (331)
Q Consensus 317 ~~~~~~~~~~~ 327 (331)
|||.+|||...
T Consensus 322 v~p~~clP~e~ 332 (342)
T COG5029 322 VDPIYCLPQEV 332 (342)
T ss_pred CCCcccCCHHH
Confidence 99999999653
No 7
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-68 Score=482.43 Aligned_cols=287 Identities=35% Similarity=0.655 Sum_probs=258.6
Q ss_pred ccccCCCcchhhhhhhhhHHHHHhhhHHhhcCCC-CCcChHHHHHHHHHhccCCCCCCCCCCCCccccCCCCCCCCCCCC
Q 020097 2 MMYESLPHHYQYQEINRITLAHFAISGLCLLGAL-DRVDKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPDD 80 (331)
Q Consensus 2 ~~l~~lp~~~~~~d~~r~~~~y~~l~~L~lL~~~-~~~~~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~~~~~ 80 (331)
|+|+.||++|+.+|+||.|++||.+++|+||++. +....+.+|+|+..||. | .|||||.+|+.
T Consensus 83 ~~Lr~Lp~~~~~LDASR~Wm~YWil~sl~lL~~~~dd~v~~~~i~fL~~c~~-P-------eGGfgGGPGQl-------- 146 (423)
T KOG0365|consen 83 KMLRQLPSQYTCLDASRPWMCYWILNSLALLDEWLDDDVKENAIDFLFTCQG-P-------EGGFGGGPGQL-------- 146 (423)
T ss_pred HHHHhCCCcccccccCcchhHHHHHHHHHHhcCcCCHHHHHHHHHHHHhcCC-C-------CCCCCCCCccc--------
Confidence 6789999999999999999999999999999963 33346789999999994 5 47777776654
Q ss_pred CCCccCCCCcHHHHHHHHHHHHHhCCC--CCcccHHHHHHHHHhccCCCCCCcccccCCccChhHHHHHHHHHHHhCCCC
Q 020097 81 NGVLMHNGSNLASTYCALAILKAVGYN--FANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWS 158 (331)
Q Consensus 81 ~~~~~~~~~~l~~Ty~Al~~L~~lg~~--~~~~~~~~~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~ 158 (331)
+|++.||+||++|.++|.+ ++.|||+++.+||.++++|||||. ++.+||.|+|.+|||+++..++|...
T Consensus 147 --------~HLA~TYAAVnaL~~~~~e~A~~~InR~~l~~fL~slK~~dGgFr-mh~~GE~DvRs~YcA~svasllni~~ 217 (423)
T KOG0365|consen 147 --------PHLAPTYAAVNALCLCGSEDAYSSINREKLYQFLFSLKDPDGGFR-MHVEGEVDVRSAYCALSVASLLNIPM 217 (423)
T ss_pred --------hhhhHHHHHHHHHHhcCcHHHHHHhhHHHHHHHHHHhcCCCCCeE-eecCCcchHHHHHHHHHHHHHHCCCc
Confidence 7999999999999999954 688999999999999999999997 67789999999999999999999887
Q ss_pred cccHHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCC-CCcc
Q 020097 159 GMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQA-ADGG 237 (331)
Q Consensus 159 ~~~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~-~dGG 237 (331)
++..+.+.+||.+||+++||||+.|+.|+|+++||||+|+|++|++.+ ..|.+++++|..+||. .+||
T Consensus 218 deL~eG~~~wi~~CQtyEGG~GG~P~~EAHGGYTFCalAalalLn~~d-----------~ln~~~Ll~W~~~RQm~~E~G 286 (423)
T KOG0365|consen 218 DELFEGTLDWIASCQTYEGGFGGEPGVEAHGGYTFCALAALALLNEMD-----------QLNLEKLLEWAVRRQMRFEGG 286 (423)
T ss_pred HHHHHHHHHHHHhcccccCCcCCCccccccCCeeHHHHHHHHHHhhhh-----------hhCHHHHHHHHHHhhhhhhcc
Confidence 778899999999999999999999999999999999999999999887 6899999999999998 6999
Q ss_pred ccCCCCCCCCcchhhHHHHHHHHhCCC-----C-----CCCHHHHHHHH-HhccCCCCCcCCCCCCCCCHHHHHHHHHHH
Q 020097 238 FQGRANKPSDTCYAFWIGSVLRMLGGY-----N-----LIDKEALRGFL-LTCQSQYGGFGKCPGDLPDLYHSFYGYTAF 306 (331)
Q Consensus 238 f~gr~~k~~D~~yt~~~~a~L~lL~~~-----~-----~~~~~~~~~~L-~~~Q~~~GGf~~~p~~~~D~~hT~~al~aL 306 (331)
|+||.||.+|.|||||++++..+|... + .+|++++.+|| ..||.++|||+++|++++|.|||+|+|.+|
T Consensus 287 FqGRtNKLVDGCYSFWvga~~~il~~~~~~~~~s~~~~~F~~~~LqeYIL~CcQ~~~GGlrDKP~K~~DfYHTCYcLsGL 366 (423)
T KOG0365|consen 287 FQGRTNKLVDGCYSFWVGASAPILQAFYSSAGHSLEHLLFNKEALQEYILLCCQSPSGGLRDKPGKPRDFYHTCYCLSGL 366 (423)
T ss_pred ccccccchhhhhHHHHhcchHHHHHHHhcccccchhhhhcCHHHHHHHHHhhccCCCCCccCCCCCCcchhhhhhHhcch
Confidence 999999999999999999999988641 1 57899999997 689999999999999999999999999999
Q ss_pred HhcCCCC--------------------CCCCCcccccc
Q 020097 307 SLLEEPG--------------------LNPLCAELGMT 324 (331)
Q Consensus 307 sll~~~~--------------------~~~~~~~~~~~ 324 (331)
|++.... +.|++|.+||+
T Consensus 367 SiAq~y~~~~~d~~~~~~~ilg~~~n~L~p~~pvyni~ 404 (423)
T KOG0365|consen 367 SIAQHYSCAPSDSPHNPDRILGSSKNSLLPVHPVYNIP 404 (423)
T ss_pred hHHhhhccCCCCCCCCCcccccCchhhcCccCccccCC
Confidence 9864332 66777777776
No 8
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=100.00 E-value=3e-66 Score=483.81 Aligned_cols=273 Identities=38% Similarity=0.683 Sum_probs=248.1
Q ss_pred CccccCCCcchhhhhhhhhHHHHHhhhHHhhcCC-CCCcChHHHHHHHHHhccCCCCCCCCCCCCccccCCCCCCCCCCC
Q 020097 1 MMMYESLPHHYQYQEINRITLAHFAISGLCLLGA-LDRVDKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPD 79 (331)
Q Consensus 1 ~~~l~~lp~~~~~~d~~r~~~~y~~l~~L~lL~~-~~~~~~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~~~~ 79 (331)
+|||..+|.+|+++|++|+|++||+|++|++|+. ...++++++++||++||+ +||||++ .+
T Consensus 9 ~~~l~~~p~~~~~~d~~~~~~~y~~l~~l~lL~~~~~~~~~~~~i~~i~~~q~--------~~GgF~~---~~------- 70 (299)
T cd02893 9 KKSLRQLPSSFTSLDASRPWLLYWILHSLELLGEELDQSYADDVISFLRRCQN--------PSGGFGG---GP------- 70 (299)
T ss_pred HHHhhcCCccccccccccHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhcC--------CCCCCCC---CC-------
Confidence 4789999999999999999999999999999997 445678899999999996 4565554 33
Q ss_pred CCCCccCCCCcHHHHHHHHHHHHHhCCC--CCcccHHHHHHHHHhccCCCCCCcccccCCccChhHHHHHHHHHHHhCCC
Q 020097 80 DNGVLMHNGSNLASTYCALAILKAVGYN--FANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDW 157 (331)
Q Consensus 80 ~~~~~~~~~~~l~~Ty~Al~~L~~lg~~--~~~~~~~~~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~ 157 (331)
.+.+|+.+||+|+++|.+++.+ ++.+|++++++||+++|++||+|... .++|.|+|+||||++++.+|+.+
T Consensus 71 ------~~~~h~~~Ty~A~~~L~ll~~~~~~~~id~~~~~~~l~~~q~~dGgf~~~-~~~e~D~r~tycava~~~lL~~~ 143 (299)
T cd02893 71 ------GQLPHLATTYAAVNALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRMH-VGGEVDVRGTYCAISVASLLNIL 143 (299)
T ss_pred ------CCCccHHHHHHHHHHHHHhCCchhhhHhhHHHHHHHHHHhcCCCCCeeCC-CCCCchHhHHHHHHHHHHHhCCC
Confidence 1347999999999999999964 67899999999999999999999876 46899999999999999999988
Q ss_pred CcccHHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCC-Cc
Q 020097 158 SGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAA-DG 236 (331)
Q Consensus 158 ~~~~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~-dG 236 (331)
+..+++++++||++||++||||++.|+.|+|+++|||||++|.+++..+ .+|++++++||++||.+ +|
T Consensus 144 ~~~~~~~~~~~l~~cQ~~dGGF~~~p~~e~h~~yTfcavasL~llg~~~-----------~~d~~~l~~wl~~~q~~~~G 212 (299)
T cd02893 144 TDELFEGVAEYILSCQTYEGGFGGVPGNEAHGGYTFCALAALAILGKPD-----------KLDLESLLRWLVARQMRFEG 212 (299)
T ss_pred chhhHHHHHHHHHHcCCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCcc-----------ccCHHHHHHHHHhhcCCCCC
Confidence 7888999999999999999999999999999999999999999999876 57899999999999998 99
Q ss_pred cccCCCCCCCCcchhhHHHHHHHHhCCC-------------CCCCHHHHHHHHHhcc-CCCCCcCCCCCCCCCHHHHHHH
Q 020097 237 GFQGRANKPSDTCYAFWIGSVLRMLGGY-------------NLIDKEALRGFLLTCQ-SQYGGFGKCPGDLPDLYHSFYG 302 (331)
Q Consensus 237 Gf~gr~~k~~D~~yt~~~~a~L~lL~~~-------------~~~~~~~~~~~L~~~Q-~~~GGf~~~p~~~~D~~hT~~a 302 (331)
||+|||+|.+|+|||||++++|++++.. .++|.+++.+||+.|| +.+|||+++|++.||+|||+++
T Consensus 213 Gf~grp~k~~D~cys~w~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~q~~~GGf~~~p~~~~D~yHT~~~ 292 (299)
T cd02893 213 GFQGRTNKLVDGCYSFWVGGSLPILEAILNAEKKFDDSAEGTLFDQEALQEYILLCCQSEEGGLRDKPGKPRDFYHTCYA 292 (299)
T ss_pred CcCCCCCCCCccHHHHHHHHHHHHHHHHhcccccccccccccccCHHHHHHHHHHhcCCCCCCcCCCCCCCCCchhHHHH
Confidence 9999999999999999999999999863 4689999999998655 5699999999999999999999
Q ss_pred HHHHHhc
Q 020097 303 YTAFSLL 309 (331)
Q Consensus 303 l~aLsll 309 (331)
|++|++.
T Consensus 293 l~~Lsl~ 299 (299)
T cd02893 293 LSGLSIA 299 (299)
T ss_pred HHHHhcC
Confidence 9999973
No 9
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=100.00 E-value=6.3e-64 Score=466.64 Aligned_cols=273 Identities=35% Similarity=0.682 Sum_probs=249.8
Q ss_pred Ccccc-CCCcchhhhhhhhhHHHHHhhhHHhhcCCCCCcChHHHHHHHHHhccCCCCCCCCCCCCccccCCCCCCCCCCC
Q 020097 1 MMMYE-SLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPD 79 (331)
Q Consensus 1 ~~~l~-~lp~~~~~~d~~r~~~~y~~l~~L~lL~~~~~~~~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~~~~ 79 (331)
+||++ .+|.+|.++|++|++++||+|++|++|+.++.++++++++||.+||+ + .+|+|++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~r~~~~y~~l~~l~lL~~~~~~~~~~~i~fl~~~q~-~------~~GgF~~~~~--------- 74 (287)
T cd02894 11 LSLTKKKDDYEYILTEHLRMSGIYWGLTALDLLGQLERLNREEIIEFVKSCQD-N------EDGGFGGSPG--------- 74 (287)
T ss_pred HHhccccCChhhhhHHhhHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhc-C------CCCCCCCCCC---------
Confidence 36788 58999999999999999999999999999877789999999999994 1 3565554332
Q ss_pred CCCCccCCCCcHHHHHHHHHHHHHhCCCCCccc--HHHHHHHHHhccCCCCCCcccccCCccChhHHHHHHHHHHHhCCC
Q 020097 80 DNGVLMHNGSNLASTYCALAILKAVGYNFANID--SKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDW 157 (331)
Q Consensus 80 ~~~~~~~~~~~l~~Ty~Al~~L~~lg~~~~~~~--~~~~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~ 157 (331)
..+|+.+||+|+++|.+++ +++.++ ++++++||+++|++||+|...+ ++++|+++||||++++.+++..
T Consensus 75 -------~~~~~~~t~~a~~~L~ll~-~~~~i~~~~~~~~~~i~~~q~~dGgf~~~~-~~e~d~~~ty~a~~~l~ll~~~ 145 (287)
T cd02894 75 -------HDPHILSTLSAIQILALYD-LLNKIDENKEKIAKFIKGLQNEDGSFSGDK-WGEVDTRFSYCAVLCLTLLGKL 145 (287)
T ss_pred -------CcchHHHHHHHHHHHHHhh-hhhhccHHHHHHHHHHHHHcCCCCCeecCC-CCCchHHHHHHHHHHHHHhCCc
Confidence 2379999999999999997 456677 8999999999999999998654 5899999999999999999987
Q ss_pred CcccHHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCcc
Q 020097 158 SGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGG 237 (331)
Q Consensus 158 ~~~~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGG 237 (331)
+.++++++++||++||++||||+..|+.|+|+++|||||++|.++|..+ .++++++++||.++|.++||
T Consensus 146 ~~i~~~~~~~~l~~~q~~dGGF~~~~~~es~~~~t~cavasL~llg~~~-----------~~~~~~~~~~L~~~q~~~GG 214 (287)
T cd02894 146 DLIDVDKAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSLD-----------LIDRDRLGWWLCERQLPSGG 214 (287)
T ss_pred chhhHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHcCccc-----------ccCHHHHHHHHHHhCCCCCC
Confidence 7889999999999999999999999999999999999999999999876 57899999999999999999
Q ss_pred ccCCCCCCCCcchhhHHHHHHHHhCCCCCCCHHHHHHHHHhccC-CCCCcCCCCCCCCCHHHHHHHHHHHHhc
Q 020097 238 FQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQS-QYGGFGKCPGDLPDLYHSFYGYTAFSLL 309 (331)
Q Consensus 238 f~gr~~k~~D~~yt~~~~a~L~lL~~~~~~~~~~~~~~L~~~Q~-~~GGf~~~p~~~~D~~hT~~al~aLsll 309 (331)
|++||+|++|+|||||++++|++|+..+++|.+++++||.+||+ .+|||+++|++.+|++||++++++|+++
T Consensus 215 f~gr~~k~~D~~ysf~~~a~l~~l~~~~~~~~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~Lsl~ 287 (287)
T cd02894 215 LNGRPEKLPDVCYSWWVLSSLKIIGRLHWINKNKLKNFILACQDEEDGGFADRPGNMVDVFHTFFGLAGLSLL 287 (287)
T ss_pred cCCCCCCCCchhHhhHHHHHHHHhccccccCHHHHHHHHHHhcCCCCCCcCCCCCCCCChhHHHHHHHHHHhC
Confidence 99999999999999999999999998889999999999999995 6999999999999999999999999985
No 10
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=100.00 E-value=2.9e-59 Score=435.25 Aligned_cols=273 Identities=47% Similarity=0.819 Sum_probs=249.2
Q ss_pred CccccCCCcchhhhhhhhhHHHHHhhhHHhhcCC-CCCcChHHHHHHHHHhc-cCCCCCCCCCCCCccccCCCCCCCCCC
Q 020097 1 MMMYESLPHHYQYQEINRITLAHFAISGLCLLGA-LDRVDKDAVSDWVLSLQ-AHPSNKADLTNGEFYGFHGSPSSQLHP 78 (331)
Q Consensus 1 ~~~l~~lp~~~~~~d~~r~~~~y~~l~~L~lL~~-~~~~~~~~~~~~i~~~q-~~~~~~~~~~dg~~ggf~~~~~~~~~~ 78 (331)
+|++..+|.++++.|++|+|++||+|++|++||. ....+++++++||++|| + .||||++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~~i~~l~~~q~~--------~~Ggf~~~~~-------- 72 (286)
T cd02890 9 QRCLKLLPSSYTSLDASRLWLLYWILSSLDLLGEDLDDENKDEIIDFIYSCQVN--------EDGGFGGGPG-------- 72 (286)
T ss_pred HHHhhcCChhhhhHHhhHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHhhcC--------CCCCCCCCCC--------
Confidence 3678888999999999999999999999999998 33467899999999999 6 4676665432
Q ss_pred CCCCCccCCCCcHHHHHHHHHHHHHhCCC-CCcccHHHHHHHHHhccCCCCCCcccccCCccChhHHHHHHHHHHHhCCC
Q 020097 79 DDNGVLMHNGSNLASTYCALAILKAVGYN-FANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDW 157 (331)
Q Consensus 79 ~~~~~~~~~~~~l~~Ty~Al~~L~~lg~~-~~~~~~~~~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~ 157 (331)
+.+|+..||+|+++|.++|.+ ++.++++++++||.++|++||+|...+ +++.|++.||||++++.+++..
T Consensus 73 --------~~~~~~~T~~al~~l~llg~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~-~~~~d~~~ty~al~~l~ll~~~ 143 (286)
T cd02890 73 --------QDPHLASTYAAVLSLAILGDDALSRIDREKIYKFLSSLQNPDGSFRGDL-GGEVDTRFVYCALSILSLLNIL 143 (286)
T ss_pred --------CCccHHHHHHHHHHHHHcCccccchhhHHHHHHHHHHhcCCCCCcccCC-CCCchHHHHHHHHHHHHHhCCc
Confidence 247999999999999999975 567889999999999999999998654 5889999999999999999976
Q ss_pred CcccHHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCc-
Q 020097 158 SGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADG- 236 (331)
Q Consensus 158 ~~~~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dG- 236 (331)
...+++++++||++||++||||+..|+.|+|+++|||||++|.+++..+ .++++++++||.++|+.+|
T Consensus 144 ~~~~~~~~~~~l~~~Q~~dGGf~~~~~~es~~~~t~~av~sL~~l~~~~-----------~~~~~~~~~~L~~~q~~~gg 212 (286)
T cd02890 144 TDIDKEKLIDYILSCQNYDGGFGGVPGAESHGGYTFCAVASLALLGRLD-----------LIDKERLLRWLVERQLASGG 212 (286)
T ss_pred hhhhHHHHHHHHHHhCCCCCCcCCCCCCCCCccHhHHHHHHHHHcCCCc-----------ccCHHHHHHHHHHhCCCCCC
Confidence 6688999999999999999999999999999999999999999999875 5789999999999999988
Q ss_pred cccCCCCCCCCcchhhHHHHHHHHhCCCCCCCHHHHHHHHH-hccCCCCCcCCCCCCCCCHHHHHHHHHHHHhc
Q 020097 237 GFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLL-TCQSQYGGFGKCPGDLPDLYHSFYGYTAFSLL 309 (331)
Q Consensus 237 Gf~gr~~k~~D~~yt~~~~a~L~lL~~~~~~~~~~~~~~L~-~~Q~~~GGf~~~p~~~~D~~hT~~al~aLsll 309 (331)
||+||++|++|+|||||++++|.+|+...++|.+++.+||. .+|..+|||+++|++.+|++||+++|++|+++
T Consensus 213 Gf~g~~~~~~d~~yt~~~~~~l~~l~~~~~~~~~~l~~~l~~~~q~~~Ggf~~~~~~~~d~~~T~~~l~~lsl~ 286 (286)
T cd02890 213 GFNGRPNKLVDTCYSFWVGASLKILGRLHLIDQEKLREYILSCQQSEVGGFSDKPGKPPDLYHTYYGLSGLSLL 286 (286)
T ss_pred CcCCCCCCCCccchhhHHHHHHHHcccccccCHHHHHHHHHhhcCCCCCCcCCCCCCCCCchhHHHHHHHHHcC
Confidence 99999999999999999999999999887899999999998 67888999999999999999999999999974
No 11
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=100.00 E-value=1.5e-46 Score=351.12 Aligned_cols=236 Identities=23% Similarity=0.334 Sum_probs=212.7
Q ss_pred hHHHHHHHHHhccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCCCcHHHHHHHHHHHHHhCCCCCcccHHHHHHH
Q 020097 40 KDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSILTS 119 (331)
Q Consensus 40 ~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~~~~~~~~~~~~~~~l~~Ty~Al~~L~~lg~~~~~~~~~~~~~~ 119 (331)
+++.++|+.++.... .+ +|.. .|.++++.||+++.+|.+|+.+++.++++++++|
T Consensus 1 ~~~h~~~~~~~l~~~-------p~---~~~~---------------~d~~~~~~~y~~l~~l~lL~~~~~~~~~~~~i~~ 55 (299)
T cd02893 1 REKHIKYLKKSLRQL-------PS---SFTS---------------LDASRPWLLYWILHSLELLGEELDQSYADDVISF 55 (299)
T ss_pred ChHHHHHHHHHhhcC-------Cc---cccc---------------cccccHHHHHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 467899999988621 12 2322 3457899999999999999987777888999999
Q ss_pred HHhccCCCCCCcccccCCccChhHHHHHHHHHHHhCC---CCcccHHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHH
Q 020097 120 MRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLED---WSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAV 196 (331)
Q Consensus 120 l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~---~~~~~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~Al 196 (331)
|+++|++||+|...+ +.++|++.||+|+.++.+++. .+.++++++++||++||++||||+..|+.|+|++.|||||
T Consensus 56 i~~~q~~~GgF~~~~-~~~~h~~~Ty~A~~~L~ll~~~~~~~~id~~~~~~~l~~~q~~dGgf~~~~~~e~D~r~tycav 134 (299)
T cd02893 56 LRRCQNPSGGFGGGP-GQLPHLATTYAAVNALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAI 134 (299)
T ss_pred HHHhcCCCCCCCCCC-CCCccHHHHHHHHHHHHHhCCchhhhHhhHHHHHHHHHHhcCCCCCeeCCCCCCchHhHHHHHH
Confidence 999999999998754 578999999999999999986 3567889999999999999999999999999999999999
Q ss_pred HHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCccccCCCCCCCCcchhhHHHHHHHHhCCCCCCCHHHHHHHH
Q 020097 197 ASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFL 276 (331)
Q Consensus 197 aaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~~yt~~~~a~L~lL~~~~~~~~~~~~~~L 276 (331)
+++.+++..+ ..+++++++||.++|+.||||+++|++++|+|||||++++|++|+..+.+|++++++||
T Consensus 135 a~~~lL~~~~-----------~~~~~~~~~~l~~cQ~~dGGF~~~p~~e~h~~yTfcavasL~llg~~~~~d~~~l~~wl 203 (299)
T cd02893 135 SVASLLNILT-----------DELFEGVAEYILSCQTYEGGFGGVPGNEAHGGYTFCALAALAILGKPDKLDLESLLRWL 203 (299)
T ss_pred HHHHHhCCCc-----------hhhHHHHHHHHHHcCCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCccccCHHHHHHHH
Confidence 9999999765 45789999999999999999999999999999999999999999988889999999999
Q ss_pred HhccCC-CCCcCCCCCCCCCHHHHHHHHHHHHhcCCC
Q 020097 277 LTCQSQ-YGGFGKCPGDLPDLYHSFYGYTAFSLLEEP 312 (331)
Q Consensus 277 ~~~Q~~-~GGf~~~p~~~~D~~hT~~al~aLsll~~~ 312 (331)
.+||+. +|||+++|++.+|++||||++++|++++..
T Consensus 204 ~~~q~~~~GGf~grp~k~~D~cys~w~~a~l~ll~~~ 240 (299)
T cd02893 204 VARQMRFEGGFQGRTNKLVDGCYSFWVGGSLPILEAI 240 (299)
T ss_pred HhhcCCCCCCcCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 999988 999999999999999999999999999864
No 12
>PLN02710 farnesyltranstransferase subunit beta
Probab=100.00 E-value=1.1e-46 Score=362.61 Aligned_cols=238 Identities=18% Similarity=0.261 Sum_probs=215.6
Q ss_pred cChHHHHHHHHHhccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCCCcHHHHHHHHHHHHHhCCCCCcccHHHHH
Q 020097 38 VDKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSIL 117 (331)
Q Consensus 38 ~~~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~~~~~~~~~~~~~~~l~~Ty~Al~~L~~lg~~~~~~~~~~~~ 117 (331)
..+++-++|+.++.. + .. ..|. ..|.+.++.||++|.+|.+||.+++..++++++
T Consensus 44 l~~~~H~~yl~~~l~-~-----lp----~~~~---------------~lDa~r~~~~Yw~L~sL~lLg~~l~~~~~~~ii 98 (439)
T PLN02710 44 LWREKHLEYLTRGLR-Q-----LG----PSFS---------------VLDANRPWLCYWILHSIALLGESLDDELENDTI 98 (439)
T ss_pred ccHHHHHHHHHHHhh-c-----CC----hhhh---------------hhhhhhHHHHHHHHHHHHHhCCcccHHHHHHHH
Confidence 578899999987763 1 00 0111 256789999999999999999888888899999
Q ss_pred HHHHhccCCCCCCcccccCCccChhHHHHHHHHHHHhCC---CCcccHHHHHHHHHhcCCCCCCcccCCCCCCChhhHHH
Q 020097 118 TSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLED---WSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYC 194 (331)
Q Consensus 118 ~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~---~~~~~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~ 194 (331)
+||.+||.++|||...+ +.++|++.||+|+.+|.+|+. +..++++++++||++||++||||+..+++|+|++.|||
T Consensus 99 ~~l~~cQ~~dGGFgg~p-g~~~hl~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s~q~~dGgF~~~~~gE~D~R~tYc 177 (439)
T PLN02710 99 DFLSRCQDPNGGYGGGP-GQLPHLATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDPSGGFRMHDGGEMDVRACYT 177 (439)
T ss_pred HHHHHhcCCCcCCCCCC-CCCccHHHHHHHHHHHHHcCCchhhcccCHHHHHHHHHHcCCCCCCcccCCCCCCCcCCcHH
Confidence 99999999999998764 678999999999999999985 45679999999999999999999999999999999999
Q ss_pred HHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCccccCCCCCCCCcchhhHHHHHHHHhCCCCCCCHHHHHH
Q 020097 195 AVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRG 274 (331)
Q Consensus 195 AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~~yt~~~~a~L~lL~~~~~~~~~~~~~ 274 (331)
||++|.+++..+ ..+++++++||++||+.||||+++|++++|+|||||++++|++|+..+.+|.+++++
T Consensus 178 Alail~LL~~l~-----------~~~~e~~~~~I~scQ~~dGGF~g~P~~EaH~gyTfcavAsL~LLg~l~~id~~~l~~ 246 (439)
T PLN02710 178 AISVASLLNILD-----------DELVKGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVDRLDLPSLIN 246 (439)
T ss_pred HHHHHHHhCcCc-----------hhhHHHHHHHHHHhCCCCCCCCCCCCCCCchHHHHHHHHHHHHcCCccccCHHHHHH
Confidence 999999999765 457899999999999999999999999999999999999999999988899999999
Q ss_pred HHHhccCCCCCcCCCCCCCCCHHHHHHHHHHHHhcCCC
Q 020097 275 FLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEP 312 (331)
Q Consensus 275 ~L~~~Q~~~GGf~~~p~~~~D~~hT~~al~aLsll~~~ 312 (331)
||.+||+.+|||+++|++.+|.+||||++++|+++++.
T Consensus 247 WL~~rQ~~~GGF~GR~nKl~D~CYSfW~~a~L~lL~~~ 284 (439)
T PLN02710 247 WVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLQQL 284 (439)
T ss_pred HHHHhcCcCCCcCCCCCCCCCchhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999864
No 13
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=100.00 E-value=1.2e-45 Score=347.19 Aligned_cols=239 Identities=21% Similarity=0.353 Sum_probs=215.2
Q ss_pred cChHHHHHHHHHhccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCCCcHHHHHHHHHHHHHhCCCCCcccHHHHH
Q 020097 38 VDKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSIL 117 (331)
Q Consensus 38 ~~~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~~~~~~~~~~~~~~~l~~Ty~Al~~L~~lg~~~~~~~~~~~~ 117 (331)
..+|+-++|+.++|+.| + .|.... .+.+.++.+|++|.+|.+|+. ++.+++++++
T Consensus 8 l~~~kh~~yl~~~~~~~--------~---~~~~~~-------------~~~~r~~~~y~~l~~L~lL~~-~~~~~~~~~i 62 (316)
T PLN03201 8 LVVDKHVRYIKSLEKKK--------D---SFESVV-------------MEHLRMNGAYWGLTALDLLGK-LDDVDRDEVV 62 (316)
T ss_pred ccHHHHHHHHHHhCCCC--------C---Cccccc-------------cccchHHHHHHHHHHHHHhCC-CccccHHHHH
Confidence 46899999999998632 2 232111 134578899999999999994 6678899999
Q ss_pred HHHHhccCCCCCCcccccCCccChhHHHHHHHHHHHhCCCCcccHHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHH
Q 020097 118 TSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVA 197 (331)
Q Consensus 118 ~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~Ala 197 (331)
+||.++|++||+|...+ +.++++..||+|+.++.+++..+.++++++++||.+||++||||+..+++|+|.++||||++
T Consensus 63 ~~l~~cq~~~GGF~~~~-~~~~h~~~Ty~al~~L~ll~~~~~id~~~~~~~l~s~Q~~dGgF~~~~~ge~D~r~ty~a~a 141 (316)
T PLN03201 63 SWVMRCQHESGGFGGNT-GHDPHILYTLSAVQILALFDRLDLLDADKVASYVAGLQNEDGSFSGDEWGEIDTRFSYCALC 141 (316)
T ss_pred HHHHHhcCCCCCcCCCC-CCcccHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhcCCCCCccCCCCCCccHHHHHHHHH
Confidence 99999999999998754 57789999999999999998777789999999999999999999999999999999999999
Q ss_pred HHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCccccCCCCCCCCcchhhHHHHHHHHhCCCCCCCHHHHHHHHH
Q 020097 198 SLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLL 277 (331)
Q Consensus 198 aL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~~yt~~~~a~L~lL~~~~~~~~~~~~~~L~ 277 (331)
+|.+++..+ .++++++++||.++|++||||+++|++++|++||||++++|++++..+.+|.+++++||.
T Consensus 142 ~l~LL~~~~-----------~i~~~~~~~~i~scq~~dGGF~~~p~~esh~g~T~caiaaL~llg~~~~~d~~~l~~wL~ 210 (316)
T PLN03201 142 CLSLLKRLD-----------KINVEKAVDYIVSCKNFDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLC 210 (316)
T ss_pred HHHHhCccc-----------hhHHHHHHHHHHHhcCCCCCcCCCCCCCCccceehHHHHHHHHcCccccCCHHHHHHHHH
Confidence 999998765 468899999999999999999999999999999999999999999888899999999999
Q ss_pred hccCCCCCcCCCCCCCCCHHHHHHHHHHHHhcCCCC
Q 020097 278 TCQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEPG 313 (331)
Q Consensus 278 ~~Q~~~GGf~~~p~~~~D~~hT~~al~aLsll~~~~ 313 (331)
.||..+|||+++|++.+|.+||||++++|+++++..
T Consensus 211 ~rQ~~~GGf~grp~k~~D~cys~w~~a~L~ll~~~~ 246 (316)
T PLN03201 211 ERQVKSGGLNGRPEKLPDVCYSWWVLSSLIIIDRVH 246 (316)
T ss_pred HhCCCCCCcCCCCCCCCchHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999998753
No 14
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=100.00 E-value=2.2e-45 Score=341.98 Aligned_cols=238 Identities=24% Similarity=0.410 Sum_probs=212.6
Q ss_pred ChHHHHHHHHHhccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCCCcHHHHHHHHHHHHHhCCCCCcccHHHHHH
Q 020097 39 DKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSILT 118 (331)
Q Consensus 39 ~~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~~~~~~~~~~~~~~~l~~Ty~Al~~L~~lg~~~~~~~~~~~~~ 118 (331)
+.|+-++|+.++.+.+ .+ ..| ...|.+.++.||+++.+|.+|+. .+.++++++++
T Consensus 2 ~~~~h~~y~~~~~~~~--------~~-~~~---------------~~~~~~r~~~~y~~l~~l~lL~~-~~~~~~~~~i~ 56 (287)
T cd02894 2 LLEKHIEYILSLTKKK--------DD-YEY---------------ILTEHLRMSGIYWGLTALDLLGQ-LERLNREEIIE 56 (287)
T ss_pred CHHHHHHHHHHhcccc--------CC-hhh---------------hhHHhhHHHHHHHHHHHHHHhCC-CchhhHHHHHH
Confidence 4688899999988621 00 001 12467899999999999999995 56788999999
Q ss_pred HHHhcc-CCCCCCcccccCCccChhHHHHHHHHHHHhCCCCccc--HHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHH
Q 020097 119 SMRNLQ-QHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMD--RERAKAYILNCQSYDGGFGLTPGSESHGGGTYCA 195 (331)
Q Consensus 119 ~l~~~q-~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~--~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~A 195 (331)
||+++| +++|+|...+ +.+++++.||+|+.++.+++..+.++ ++++++||++||++||||+..|++|+|+++||||
T Consensus 57 fl~~~q~~~~GgF~~~~-~~~~~~~~t~~a~~~L~ll~~~~~i~~~~~~~~~~i~~~q~~dGgf~~~~~~e~d~~~ty~a 135 (287)
T cd02894 57 FVKSCQDNEDGGFGGSP-GHDPHILSTLSAIQILALYDLLNKIDENKEKIAKFIKGLQNEDGSFSGDKWGEVDTRFSYCA 135 (287)
T ss_pred HHHHHhcCCCCCCCCCC-CCcchHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHcCCCCCeecCCCCCchHHHHHHH
Confidence 999999 6799998754 56789999999999999987655667 8999999999999999999999999999999999
Q ss_pred HHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCccccCCCCCCCCcchhhHHHHHHHHhCCCCCCCHHHHHHH
Q 020097 196 VASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGF 275 (331)
Q Consensus 196 laaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~~yt~~~~a~L~lL~~~~~~~~~~~~~~ 275 (331)
+++|.+++..+ .++++++++||.++|++||||++++++++|+|||||++++|.+||..+.++.+++++|
T Consensus 136 ~~~l~ll~~~~-----------~i~~~~~~~~l~~~q~~dGGF~~~~~~es~~~~t~cavasL~llg~~~~~~~~~~~~~ 204 (287)
T cd02894 136 VLCLTLLGKLD-----------LIDVDKAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWW 204 (287)
T ss_pred HHHHHHhCCcc-----------hhhHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHcCcccccCHHHHHHH
Confidence 99999998654 5789999999999999999999999999999999999999999998888999999999
Q ss_pred HHhccCCCCCcCCCCCCCCCHHHHHHHHHHHHhcCCCC
Q 020097 276 LLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEPG 313 (331)
Q Consensus 276 L~~~Q~~~GGf~~~p~~~~D~~hT~~al~aLsll~~~~ 313 (331)
|.+||+.+|||+++|++.||++||||++++|++++...
T Consensus 205 L~~~q~~~GGf~gr~~k~~D~~ysf~~~a~l~~l~~~~ 242 (287)
T cd02894 205 LCERQLPSGGLNGRPEKLPDVCYSWWVLSSLKIIGRLH 242 (287)
T ss_pred HHHhCCCCCCcCCCCCCCCchhHhhHHHHHHHHhcccc
Confidence 99999999999999999999999999999999998763
No 15
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=100.00 E-value=3.3e-45 Score=343.07 Aligned_cols=218 Identities=25% Similarity=0.284 Sum_probs=199.7
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCC--CcccHHHHHHHHHhcc----CCCCCCccccc---------CCccChhHHHHHHHH
Q 020097 86 HNGSNLASTYCALAILKAVGYNF--ANIDSKSILTSMRNLQ----QHDGSFMPIHF---------GAEKDLRFVYCAAAI 150 (331)
Q Consensus 86 ~~~~~l~~Ty~Al~~L~~lg~~~--~~~~~~~~~~~l~~~q----~~dG~f~~~~~---------~~~~d~~~ty~al~~ 150 (331)
+|.++++.||++|.+|.+|+++. +.++|+++++||+++| +++|||...+. .+++|++.||+|+.+
T Consensus 22 ~d~~r~~~~yf~l~~L~lL~~~~~~~~~~r~~~i~~i~~~q~~~~~~~GgF~~~~~~~~~~~~~~~~~~~l~~ty~Al~~ 101 (307)
T cd02895 22 LDTNRLTIAFFALSGLDLLGALDSILVEEKDDIIEWIYSLQVLSNLPRGGFRGSSTLGLPGTASKYDTGNLAMTYFALLS 101 (307)
T ss_pred hhhhhHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccccccccCCcccHHHHHHHHHH
Confidence 57799999999999999999876 5788999999999999 99999987542 147899999999999
Q ss_pred HHHhCC-CCcccHHHHHHHHHhcCCCCCCcccCC---CCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHH
Q 020097 151 CFLLED-WSGMDRERAKAYILNCQSYDGGFGLTP---GSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLS 226 (331)
Q Consensus 151 l~lL~~-~~~~~~~~~~~~I~~~Q~~dGGFg~~p---~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~ 226 (331)
+.+|+. ...++++++++||++||++||||+..+ ++|+|.+.|||||++|.+++..+. ..++++++++
T Consensus 102 L~lL~~~~~~idr~~i~~~l~~~q~~dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~~~~---------~~~d~~~li~ 172 (307)
T cd02895 102 LLILGDDLSRVDRKAILNFLSKLQLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSE---------EDIDKEKLID 172 (307)
T ss_pred HHHhCCchhhhhHHHHHHHHHHhCCCCCCccCCcCCcCCCccHHHHHHHHHHHHHhCCCcc---------ccccHHHHHH
Confidence 999985 345789999999999999999999997 899999999999999999997642 1368999999
Q ss_pred HHHhcCCCCccccCCCCCCCCcchhhHHHHHHHHhCCCC---CCCHHHHHHHHHhccCCCCCcCCCCCCCCCHHHHHHHH
Q 020097 227 WCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYN---LIDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGY 303 (331)
Q Consensus 227 wL~~~Q~~dGGf~gr~~k~~D~~yt~~~~a~L~lL~~~~---~~~~~~~~~~L~~~Q~~~GGf~~~p~~~~D~~hT~~al 303 (331)
||.++|+.||||.+.|+.++|++||||++++|++|+... .+|.+++++||.+||+.+|||+++|++.+|.+||||++
T Consensus 173 ~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr~~k~~D~cysfw~~ 252 (307)
T cd02895 173 YIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGRPNKPADTCYSFWVG 252 (307)
T ss_pred HHHHccCCCCCccCCCCCCccccHHHHHHHHHHHcCCccccccccHHHHHHHHHHhcCCCCCcCCCCCCCCccchhhHHH
Confidence 999999999999999999999999999999999999864 68999999999999999999999999999999999999
Q ss_pred HHHHhcCCC
Q 020097 304 TAFSLLEEP 312 (331)
Q Consensus 304 ~aLsll~~~ 312 (331)
++|++++..
T Consensus 253 a~L~iL~~~ 261 (307)
T cd02895 253 ASLKLLDAF 261 (307)
T ss_pred HHHHHcCcc
Confidence 999999875
No 16
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=100.00 E-value=3e-43 Score=327.59 Aligned_cols=215 Identities=30% Similarity=0.426 Sum_probs=202.1
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhcc-CCCCCCcccccCCccChhHHHHHHHHHHHhCC--CCcccH
Q 020097 86 HNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQ-QHDGSFMPIHFGAEKDLRFVYCAAAICFLLED--WSGMDR 162 (331)
Q Consensus 86 ~~~~~l~~Ty~Al~~L~~lg~~~~~~~~~~~~~~l~~~q-~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~--~~~~~~ 162 (331)
+|.++++.||++|++|.+||.+++..+++++++||+++| ++||+|...+ +.++|++.||+|+.++.+++. .+.+++
T Consensus 22 ~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~~i~~l~~~q~~~~Ggf~~~~-~~~~~~~~T~~al~~l~llg~~~~~~~~~ 100 (286)
T cd02890 22 LDASRLWLLYWILSSLDLLGEDLDDENKDEIIDFIYSCQVNEDGGFGGGP-GQDPHLASTYAAVLSLAILGDDALSRIDR 100 (286)
T ss_pred HHhhHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHhhcCCCCCCCCCC-CCCccHHHHHHHHHHHHHcCccccchhhH
Confidence 567899999999999999998788888999999999999 9999998754 578999999999999999997 567889
Q ss_pred HHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCccccCCC
Q 020097 163 ERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRA 242 (331)
Q Consensus 163 ~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr~ 242 (331)
+++++||.+||++||||+..|+.|+|...|||||++|.+++... ..+++++++||.++|++||||+++|
T Consensus 101 ~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~-----------~~~~~~~~~~l~~~Q~~dGGf~~~~ 169 (286)
T cd02890 101 EKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNILT-----------DIDKEKLIDYILSCQNYDGGFGGVP 169 (286)
T ss_pred HHHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHHHhCCch-----------hhhHHHHHHHHHHhCCCCCCcCCCC
Confidence 99999999999999999999999999999999999999999764 4679999999999999999999999
Q ss_pred CCCCCcchhhHHHHHHHHhCCCCCCCHHHHHHHHHhccCCCC-CcCCCCCCCCCHHHHHHHHHHHHhcCCC
Q 020097 243 NKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYG-GFGKCPGDLPDLYHSFYGYTAFSLLEEP 312 (331)
Q Consensus 243 ~k~~D~~yt~~~~a~L~lL~~~~~~~~~~~~~~L~~~Q~~~G-Gf~~~p~~~~D~~hT~~al~aLsll~~~ 312 (331)
++++|++||||++++|++|+..+.++++++++||.+||+.+| ||+++|++.||++||||++++|++++..
T Consensus 170 ~~es~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~~q~~~ggGf~g~~~~~~d~~yt~~~~~~l~~l~~~ 240 (286)
T cd02890 170 GAESHGGYTFCAVASLALLGRLDLIDKERLLRWLVERQLASGGGFNGRPNKLVDTCYSFWVGASLKILGRL 240 (286)
T ss_pred CCCCCccHhHHHHHHHHHcCCCcccCHHHHHHHHHHhCCCCCCCcCCCCCCCCccchhhHHHHHHHHcccc
Confidence 999999999999999999998888899999999999999987 9999999999999999999999999876
No 17
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-35 Score=255.69 Aligned_cols=211 Identities=26% Similarity=0.423 Sum_probs=201.1
Q ss_pred CcHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhccCCCCCCcccccCCccChhHHHHHHHHHHHhCCCCcccHHHHHHH
Q 020097 89 SNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAY 168 (331)
Q Consensus 89 ~~l~~Ty~Al~~L~~lg~~~~~~~~~~~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~~~~ 168 (331)
=.+...|+.+.+|.+++ .++++++++++.|+++||+++|+|...+ |-.+++-.|.+|+.+|.+.+..+..++++++.|
T Consensus 45 lRmsgiYWg~tal~ll~-~le~~~~eeiv~~v~~C~~~~GGfa~~~-Ghd~hll~TlsAvQiL~~ydsi~~~d~d~v~~y 122 (329)
T KOG0366|consen 45 LRMSGIYWGLTALDLLG-QLERMSREEIVSFVLSCQHEDGGFAGCP-GHDPHLLYTLSAVQILALYDSINVLDRDKVASY 122 (329)
T ss_pred hhhcchhhhhhHHHHhc-ccchhhHHHHHHHHHheecCCCCcCCCC-CCChHHHHHHHHHHHHHHHcccccccHHHHHHH
Confidence 46888999999999999 5788899999999999999999998764 678889999999999999998889999999999
Q ss_pred HHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCccccCCCCCCCCc
Q 020097 169 ILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDT 248 (331)
Q Consensus 169 I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~ 248 (331)
|...|++||.|.+...+|-+.+.+||||++|.+||+++ .++++++++|++++.+-||||.-+|+.+++.
T Consensus 123 i~gLq~edGsF~gD~wGEvDTRfs~~av~~L~lLg~ld-----------~~nve~aVd~~~~CyN~DGGFG~~pGaESHa 191 (329)
T KOG0366|consen 123 IKGLQQEDGSFSGDIWGEVDTRFSYCAVACLALLGKLD-----------TINVEKAVDFVLSCYNFDGGFGCRPGAESHA 191 (329)
T ss_pred HHhhcCcCCcccCCcccccchhhhHHHHHHHHHHhhHH-----------HhhHHHHHHHHHhhcccCCCcCCCCCccccc
Confidence 99999999999999999999999999999999999997 6899999999999999999999999999999
Q ss_pred chhhHHHHHHHHhCCCCCCCHHHHHHHHHhccCCCCCcCCCCCCCCCHHHHHHHHHHHHhcCCC
Q 020097 249 CYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEP 312 (331)
Q Consensus 249 ~yt~~~~a~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~~~p~~~~D~~hT~~al~aLsll~~~ 312 (331)
...||++++|+++|+.+.+|.+.+-+||...|-+.||..++|.+.||+++++|.|++|.++|+.
T Consensus 192 gqifcCvgaLai~~~L~~vd~d~lgwwlceRQ~~sGGLNGRpeKlpDVCYSwWvlsSL~iigrl 255 (329)
T KOG0366|consen 192 GQIFCCVGALAITGKLHLVDRDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLSSLAIIGRL 255 (329)
T ss_pred ceehhhHHHHHHccchhhcCHHHHHHHHHhccCCCCCCCCCcccCcchhhHHHHHhHHHHhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999874
No 18
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-34 Score=256.16 Aligned_cols=211 Identities=21% Similarity=0.245 Sum_probs=193.2
Q ss_pred CcHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhccCCCCCCcccccCCccChhHHHHHHHHHHHhCC---CCcccHHHH
Q 020097 89 SNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLED---WSGMDRERA 165 (331)
Q Consensus 89 ~~l~~Ty~Al~~L~~lg~~~~~~~~~~~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~---~~~~~~~~~ 165 (331)
.++++.|+...++.+++.....+++++.+.++..++.++|+|...+ +.++++-.||.|+.++.+++. +..++++++
T Consensus 53 ~~~~~iyw~~~sl~~l~~~~~~~~~er~i~~v~~~~~~~G~f~~~~-g~~~hL~sT~~Ai~~L~~~d~~~~~~~idr~~l 131 (342)
T COG5029 53 SRLNTIYWGDNSLWMLKRYDKTVDKERKISFVLGCVGPSGGFGGGP-GQDSHLASTVFAIQSLAMLDSLDVLSRIDRDSL 131 (342)
T ss_pred cchhhhhhccchHHHhcCcchhhhhhhhheeeeeeecCCCCcCCCC-ccchhHHHHHHHHHHHHHhccccccchhhHHHH
Confidence 5688889999999999865445778999999999999999998654 678899999999999999963 355677889
Q ss_pred HHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCccccCCCCCC
Q 020097 166 KAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKP 245 (331)
Q Consensus 166 ~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~ 245 (331)
.+||..||+|||+|...-.+|++....|+|+.+|.++|..+ ..+.+..++||.++|+-||||+..|+.|
T Consensus 132 ~~fi~~lk~pdGsF~~~~~gevDtr~~Y~al~ilsllg~~~-----------~~~~e~~vdyl~kCqnyeGGFg~~p~aE 200 (342)
T COG5029 132 ASFISGLKNPDGSFRSDLEGEVDTRFLYIALSILSLLGDLD-----------KELFEGAVDYLKKCQNYEGGFGLCPYAE 200 (342)
T ss_pred HHHHHhccCCCCceecccCCcchHHHHHHHHHHHHHHhhcc-----------hhhhHHHHHHHHHhhccCCcccCCCchh
Confidence 99999999999999999889999999999999999999776 5678899999999999999999999999
Q ss_pred CCcchhhHHHHHHHHhCCCCCCC-HHHHHHHHHhccCCCCCcCCCCCCCCCHHHHHHHHHHHHhcCC
Q 020097 246 SDTCYAFWIGSVLRMLGGYNLID-KEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEE 311 (331)
Q Consensus 246 ~D~~yt~~~~a~L~lL~~~~~~~-~~~~~~~L~~~Q~~~GGf~~~p~~~~D~~hT~~al~aLsll~~ 311 (331)
++..||||++++|++|+..+.+| ++++.+||...|.+.|||.+++++.+|.+++||.+++|.+++.
T Consensus 201 aHag~tFcalaalalL~~Ld~ls~~E~l~~Wl~~RQ~ssgGl~GR~nKl~D~CYs~WvlsSl~il~~ 267 (342)
T COG5029 201 AHAGYTFCALAALALLGKLDKLSDVEKLIRWLAERQLSSGGLNGRSNKLVDTCYSFWVLSSLAILGK 267 (342)
T ss_pred hccchHHHHHHHHHHHhcccccchHHHHHHHHHHcccccCCcCCCcccCccchhhhhhcchHHhcch
Confidence 99999999999999999988888 7999999999999999999999999999999999999999984
No 19
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.1e-31 Score=242.25 Aligned_cols=215 Identities=22% Similarity=0.310 Sum_probs=196.8
Q ss_pred cCCCCcHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhccCCCCCCcccccCCccChhHHHHHHHHHHHhCC---CCccc
Q 020097 85 MHNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLED---WSGMD 161 (331)
Q Consensus 85 ~~~~~~l~~Ty~Al~~L~~lg~~~~~~~~~~~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~---~~~~~ 161 (331)
.+|.+..|+.||-+++|++|+..+++.-.+++++||..||.|.|||...| |..+++-.||.|+.++.+++. +..++
T Consensus 94 ~LDASR~Wm~YWil~sl~lL~~~~dd~v~~~~i~fL~~c~~PeGGfgGGP-GQl~HLA~TYAAVnaL~~~~~e~A~~~In 172 (423)
T KOG0365|consen 94 CLDASRPWMCYWILNSLALLDEWLDDDVKENAIDFLFTCQGPEGGFGGGP-GQLPHLAPTYAAVNALCLCGSEDAYSSIN 172 (423)
T ss_pred ccccCcchhHHHHHHHHHHhcCcCCHHHHHHHHHHHHhcCCCCCCCCCCC-ccchhhhHHHHHHHHHHhcCcHHHHHHhh
Confidence 36789999999999999999988877667899999999999999998765 677899999999999999974 35689
Q ss_pred HHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCccccCC
Q 020097 162 RERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGR 241 (331)
Q Consensus 162 ~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr 241 (331)
++++.+|+.++.++||||...-++|.++...|||++.-.++|...+++ .+.+.+||.++|+-+|||.|.
T Consensus 173 R~~l~~fL~slK~~dGgFrmh~~GE~DvRs~YcA~svasllni~~deL-----------~eG~~~wi~~CQtyEGG~GG~ 241 (423)
T KOG0365|consen 173 REKLYQFLFSLKDPDGGFRMHVEGEVDVRSAYCALSVASLLNIPMDEL-----------FEGTLDWIASCQTYEGGFGGE 241 (423)
T ss_pred HHHHHHHHHHhcCCCCCeEeecCCcchHHHHHHHHHHHHHHCCCcHHH-----------HHHHHHHHHhcccccCCcCCC
Confidence 999999999999999999999999999999999999999999776432 578999999999999999999
Q ss_pred CCCCCCcchhhHHHHHHHHhCCCCCCCHHHHHHHHHhccCC-CCCcCCCCCCCCCHHHHHHHHHHHHhcCC
Q 020097 242 ANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQ-YGGFGKCPGDLPDLYHSFYGYTAFSLLEE 311 (331)
Q Consensus 242 ~~k~~D~~yt~~~~a~L~lL~~~~~~~~~~~~~~L~~~Q~~-~GGf~~~p~~~~D~~hT~~al~aLsll~~ 311 (331)
|+.+++..||||++|+|++|+..+..|.+++.+|..+.|.. +|||.++.++..|-++|||--+...++..
T Consensus 242 P~~EAHGGYTFCalAalalLn~~d~ln~~~Ll~W~~~RQm~~E~GFqGRtNKLVDGCYSFWvga~~~il~~ 312 (423)
T KOG0365|consen 242 PGVEAHGGYTFCALAALALLNEMDQLNLEKLLEWAVRRQMRFEGGFQGRTNKLVDGCYSFWVGASAPILQA 312 (423)
T ss_pred ccccccCCeeHHHHHHHHHHhhhhhhCHHHHHHHHHHhhhhhhccccccccchhhhhHHHHhcchHHHHHH
Confidence 99999999999999999999998889999999999999985 99999999999999999998887777644
No 20
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.97 E-value=5.8e-30 Score=235.26 Aligned_cols=260 Identities=36% Similarity=0.491 Sum_probs=219.2
Q ss_pred hhhhhhhHHHHHhhhHHhhcCCC------CCcChHHHHHHHHHhccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccC
Q 020097 13 YQEINRITLAHFAISGLCLLGAL------DRVDKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMH 86 (331)
Q Consensus 13 ~~d~~r~~~~y~~l~~L~lL~~~------~~~~~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~~~~~~~~~~~ 86 (331)
.....+++.++|++.++..++.. .....++.++||.++|+ .||+|+.+.+..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~q~--------~dG~~~~~~~~~-------------- 78 (300)
T cd00688 21 SLCGEQTWSTAWPLLALLLLLAATGIRDKADENIEKGIQRLLSYQL--------SDGGFSGWGGND-------------- 78 (300)
T ss_pred cCCcCcHHHHHHHHHHHHHhCCcccccccchHHHHHHHHHHHhccC--------CCCCccCCCCCC--------------
Confidence 34678899999999999999752 22356789999999996 578777664431
Q ss_pred CCCcHHHHHHHHHHHHHhCCC--CCcccHHHHHHHHHhccCCCCCCcccccC------CccChhHHHHHHHHHHHhCCCC
Q 020097 87 NGSNLASTYCALAILKAVGYN--FANIDSKSILTSMRNLQQHDGSFMPIHFG------AEKDLRFVYCAAAICFLLEDWS 158 (331)
Q Consensus 87 ~~~~l~~Ty~Al~~L~~lg~~--~~~~~~~~~~~~l~~~q~~dG~f~~~~~~------~~~d~~~ty~al~~l~lL~~~~ 158 (331)
.++++.|++++.+|..++.. ......+++++||.+.|++||+|...... ...+++.|++++.+|.+++...
T Consensus 79 -~~~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~~~~~~~t~~al~aL~~~~~~~ 157 (300)
T cd00688 79 -YPSLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLD 157 (300)
T ss_pred -CcchHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCCCCeeeecCCCCcccCCCCcccHHHHHHHHHHHcCCCC
Confidence 36899999999999999864 33445688999999999999999754321 2678999999999999998543
Q ss_pred -cccHHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCcc
Q 020097 159 -GMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGG 237 (331)
Q Consensus 159 -~~~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGG 237 (331)
...++++++||.++|++|||| .+..++|...|++++.+|..++... ....+++++||.++|..+||
T Consensus 158 ~~~~~~~~~~~l~~~q~~~g~~--~~~~~~~~~~t~~~~~aL~~~~~~~-----------~~~~~~~~~~L~~~q~~~g~ 224 (300)
T cd00688 158 PDPLIEKALDYLLSCQNYDGGF--GPGGESHGYGTACAAAALALLGDLD-----------SPDAKKALRWLLSRQRPDGG 224 (300)
T ss_pred CcHHHHHHHHHHHHHhcCCCCc--CCCccccHHHHHHHHHHHHHcCCcc-----------hHHHHHHHHHHHHhcCCCCC
Confidence 457899999999999999999 6778899999999999999998752 34688999999999999999
Q ss_pred ccCCC---CCCCCcchhhHHHHHHHHhCCC-CCCCHHHHHHHHHhccCCCCCcCCCCCCCCCHHHHHHHHHHHHh
Q 020097 238 FQGRA---NKPSDTCYAFWIGSVLRMLGGY-NLIDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSL 308 (331)
Q Consensus 238 f~gr~---~k~~D~~yt~~~~a~L~lL~~~-~~~~~~~~~~~L~~~Q~~~GGf~~~p~~~~D~~hT~~al~aLsl 308 (331)
|.... .+..|+++++|++.+|..++.. .....+++++||.++|+.+|||...|.+.+|.+||++++.||+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~aL~~~~~~~~~~~~~~~~~~L~~~q~~~G~w~~~~~~~~~~~~t~~al~aL~~ 299 (300)
T cd00688 225 WGEGRDRTNKLSDSCYTEWAAYALLALGKLGDLEDAEKLVKWLLSQQNEDGGFSSKPGKSYDTQHTVFALLALSL 299 (300)
T ss_pred cCccccCCCCcCchHHHHHHHHHHHHHhhhcCcccHHHHHHHHHhccCCCCCcCcCCCCCCcchhhHHHHHHHhc
Confidence 99875 6788999999999999998753 34567999999999999999999999999999999999999975
No 21
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.4e-28 Score=217.59 Aligned_cols=216 Identities=26% Similarity=0.341 Sum_probs=189.1
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhccCCC---C-----CCccccc---------CCccChhHHHHHH
Q 020097 86 HNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHD---G-----SFMPIHF---------GAEKDLRFVYCAA 148 (331)
Q Consensus 86 ~~~~~l~~Ty~Al~~L~~lg~~~~~~~~~~~~~~l~~~q~~d---G-----~f~~~~~---------~~~~d~~~ty~al 148 (331)
+|.+-+...++||..|.+|+ .++.++++.+++||.+.|-.. + ||..... -.++++-.||+++
T Consensus 34 hd~~R~tiafFaisGLd~L~-~ld~v~k~d~i~Wiy~~~v~~~dr~~~k~~GF~Gsr~~~~p~~~~~~~~~~lA~Ty~sl 112 (347)
T KOG0367|consen 34 HDTNRLTIAFFAISGLDLLD-ALDSVDKDDIIEWIYKLQVTPTDRTNLKICGFRGSRSMNIPIATNTYNEPHLAMTYTSL 112 (347)
T ss_pred cccchHHHHHHHHcchhhhh-hhhccchhHHHHHHHhceeccccCCCceeeeeeeeccccCCCCCCCCcchhHHHHHHHH
Confidence 56788999999999999999 577788999999999998422 2 4543221 1356888999999
Q ss_pred HHHHHhCC-CCcccHHHHHHHHHhcCCCCCCcccCC-CCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHH
Q 020097 149 AICFLLED-WSGMDRERAKAYILNCQSYDGGFGLTP-GSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLS 226 (331)
Q Consensus 149 ~~l~lL~~-~~~~~~~~~~~~I~~~Q~~dGGFg~~p-~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~ 226 (331)
+.|..|++ .+.+|++.+++++..||.+||.|...+ |.|++....|||++++.+++... .+|.++++.
T Consensus 113 ~~L~~lGddLsrlDrksil~~v~~~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ymLd~~s-----------~iD~ek~~~ 181 (347)
T KOG0367|consen 113 ACLVILGDDLSRLDRKSILRFVSACQRPDGSFVSINVGSESDMRFVYCAVAICYMLDFWS-----------GIDKEKLIG 181 (347)
T ss_pred HHHHHHcchHhhhhHHHHHHHHHHhcCCCCceeecCCCCchhhHHHHHHHHHHHHhcccc-----------ccCHHHHHH
Confidence 99999985 467899999999999999999999876 88999999999999999999554 689999999
Q ss_pred HHHhcCCCCccccCCCCCCCCcchhhHHHHHHHHhCCC--C----CCCHHHHHHHHHhccCCCCCcCCCCCCCCCHHHHH
Q 020097 227 WCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGY--N----LIDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSF 300 (331)
Q Consensus 227 wL~~~Q~~dGGf~gr~~k~~D~~yt~~~~a~L~lL~~~--~----~~~~~~~~~~L~~~Q~~~GGf~~~p~~~~D~~hT~ 300 (331)
||.++|+.||||+--|+.|++..+|||++|+|++++.. + -.+++++++|++..|..+|||.++|+++.|.+++|
T Consensus 182 yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~~~l~~e~l~~~~~~erlirWli~RQ~~sgGfqGR~NKp~DTCYaF 261 (347)
T KOG0367|consen 182 YIRSSQRYDGGFGQHPGGESHGGATFCALASLALMGKLIPEELSNTSKVERLIRWLIQRQVSSGGFQGRTNKPVDTCYAF 261 (347)
T ss_pred HHHHhhccccccccCCCCCCCcchhHHHHHHHHHHhhhhhhhhccccCHHHHHHHHHHHhhccCCcCCCCCCCchhHHHH
Confidence 99999999999999999999999999999999999874 2 13479999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCC
Q 020097 301 YGYTAFSLLEEPG 313 (331)
Q Consensus 301 ~al~aLsll~~~~ 313 (331)
|..++|-+++...
T Consensus 262 WigasLklL~~~~ 274 (347)
T KOG0367|consen 262 WIGASLKLLDADW 274 (347)
T ss_pred HHHHHHHHccchH
Confidence 9999999997653
No 22
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.91 E-value=5.5e-23 Score=188.85 Aligned_cols=212 Identities=24% Similarity=0.227 Sum_probs=178.6
Q ss_pred CcHHHHHHHHHHHHHhCCCC-----CcccHHHHHHHHHhccCCCCCCcccccCCccChhHHHHHHHHHHHhCCC---Ccc
Q 020097 89 SNLASTYCALAILKAVGYNF-----ANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDW---SGM 160 (331)
Q Consensus 89 ~~l~~Ty~Al~~L~~lg~~~-----~~~~~~~~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~---~~~ 160 (331)
..+++|++++.++..++... .....+++++||.+.|++||+|........+|+..|++++.++..++.. ...
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~~~~~~ 104 (300)
T cd00688 25 EQTWSTAWPLLALLLLLAATGIRDKADENIEKGIQRLLSYQLSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYIAVDRI 104 (300)
T ss_pred CcHHHHHHHHHHHHHhCCcccccccchHHHHHHHHHHHhccCCCCCccCCCCCCCcchHhHHHHHHHHHHcCCccccCHH
Confidence 47999999999999987532 2345688999999999999999864321278999999999999998753 345
Q ss_pred cHHHHHHHHHhcCCCCCCcccCCCC-------CCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCC
Q 020097 161 DRERAKAYILNCQSYDGGFGLTPGS-------ESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQA 233 (331)
Q Consensus 161 ~~~~~~~~I~~~Q~~dGGFg~~p~~-------esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~ 233 (331)
..+++++||.++|++||||...... .++...|++|+.+|..++.... ..+++++++||.++|.
T Consensus 105 ~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~~~~~~~t~~al~aL~~~~~~~~----------~~~~~~~~~~l~~~q~ 174 (300)
T cd00688 105 DLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLDP----------DPLIEKALDYLLSCQN 174 (300)
T ss_pred HHHHHHHHHHHccCCCCCeeeecCCCCcccCCCCcccHHHHHHHHHHHcCCCCC----------cHHHHHHHHHHHHHhc
Confidence 6899999999999999999987543 6889999999999999987531 2468899999999999
Q ss_pred CCccccCCCCCCCCcchhhHHHHHHHHhCCCCCCCHHHHHHHHHhccCCCCCcCCCC---CCCCCHHHHHHHHHHHHhcC
Q 020097 234 ADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCP---GDLPDLYHSFYGYTAFSLLE 310 (331)
Q Consensus 234 ~dGGf~gr~~k~~D~~yt~~~~a~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~~~p---~~~~D~~hT~~al~aLsll~ 310 (331)
++||| +++.+.|+..++|++.+|.+++.......+++++||.++|..+|||...+ ...+|..+|.+++.+|..++
T Consensus 175 ~~g~~--~~~~~~~~~~t~~~~~aL~~~~~~~~~~~~~~~~~L~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~aL~~~~ 252 (300)
T cd00688 175 YDGGF--GPGGESHGYGTACAAAALALLGDLDSPDAKKALRWLLSRQRPDGGWGEGRDRTNKLSDSCYTEWAAYALLALG 252 (300)
T ss_pred CCCCc--CCCccccHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCCcCccccCCCCcCchHHHHHHHHHHHHHh
Confidence 99999 66777899999999999999986433457899999999999999999875 67899999999999999887
Q ss_pred CC
Q 020097 311 EP 312 (331)
Q Consensus 311 ~~ 312 (331)
..
T Consensus 253 ~~ 254 (300)
T cd00688 253 KL 254 (300)
T ss_pred hh
Confidence 54
No 23
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.87 E-value=2.7e-20 Score=177.56 Aligned_cols=240 Identities=20% Similarity=0.166 Sum_probs=169.9
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCCCcHHHHHHHHHHHHHhCCC-CCcccHHHHHHH
Q 020097 41 DAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYN-FANIDSKSILTS 119 (331)
Q Consensus 41 ~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~~~~~~~~~~~~~~~l~~Ty~Al~~L~~lg~~-~~~~~~~~~~~~ 119 (331)
++.++||.+.|+ +||+|+... +++..|..++.+|...|.. -.....+++++|
T Consensus 2 ~~~~~~L~~~Q~--------~dG~W~~~~-------------------~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~ 54 (348)
T cd02889 2 RRALDFLLSLQA--------PDGHWPGEY-------------------SQVWDTALALQALLEAGLAPEFDPALKKALEW 54 (348)
T ss_pred chHHHHHHHhcc--------CCCCccccC-------------------CchHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Confidence 567999999997 577776432 3799999999999988851 112235789999
Q ss_pred HHhcc--------------CCCCCCccccc-CCccChhHHHHHHHHHHHhCCC-------CcccHHHHHHHHHhcCCCCC
Q 020097 120 MRNLQ--------------QHDGSFMPIHF-GAEKDLRFVYCAAAICFLLEDW-------SGMDRERAKAYILNCQSYDG 177 (331)
Q Consensus 120 l~~~q--------------~~dG~f~~~~~-~~~~d~~~ty~al~~l~lL~~~-------~~~~~~~~~~~I~~~Q~~dG 177 (331)
|.+.| .++|+|..... .+..|...|-.++.++..++.. ....++++++||+++|++||
T Consensus 55 l~~~q~~~~~~~~~~~~~~~~~Ggw~y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG 134 (348)
T cd02889 55 LLKSQIRDNPDDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLSMQNSNG 134 (348)
T ss_pred HHhcCCCCCCCchhhcCCCCCCCcCcccCcCCCCCCCCChHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHHhccCCC
Confidence 99999 68898864321 1223444555555555555432 23456889999999999999
Q ss_pred CcccCCC-------------------CCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCccc
Q 020097 178 GFGLTPG-------------------SESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGF 238 (331)
Q Consensus 178 GFg~~p~-------------------~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf 238 (331)
||..... ..++...|..+|.+|..++........+ -...++++++||.+.|.++|||
T Consensus 135 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~----~~~~i~~a~~~L~~~q~~dG~w 210 (348)
T cd02889 135 GFAAFEPDNTYKYLELIPEVDGDIMIDPPYVECTGSVLEALGLFGKLYPEHRRE----IDPAIRRAVKYLEREQEPDGSW 210 (348)
T ss_pred CEeeecCCccHHHHhcCchhhcCCccCCCCcchHHHHHHHHHHhhhcCCchHHH----HHHHHHHHHHHHHHhCCCCCCc
Confidence 9985321 2467788999999999988653110000 0024678999999999999999
Q ss_pred cCCCCCCCCcchhhHHHHHHHHhCCCC-CCCHHHHHHHHHhccCCCCCcCCC----------CCCCCCHHHHHHHHHHHH
Q 020097 239 QGRANKPSDTCYAFWIGSVLRMLGGYN-LIDKEALRGFLLTCQSQYGGFGKC----------PGDLPDLYHSFYGYTAFS 307 (331)
Q Consensus 239 ~gr~~k~~D~~yt~~~~a~L~lL~~~~-~~~~~~~~~~L~~~Q~~~GGf~~~----------p~~~~D~~hT~~al~aLs 307 (331)
.++.+ ...+..+.+++.+|..+|... ....+++++||.++|+++|||+.. ++..+++..|.++|.+|.
T Consensus 211 ~~~~~-~~~~y~ta~a~~aL~~~g~~~~~~~~~~~~~~L~~~Q~~dG~w~~~~~~~~~~~~~~~~~~~~~~Ta~al~aL~ 289 (348)
T cd02889 211 YGRWG-VCFIYGTWFALEALAAAGEDENSPYVRKACDWLLSKQNPDGGWGESYESYEDPSYAGGGRSTVVQTAWALLALM 289 (348)
T ss_pred cccCC-CcchHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCcCCcccccccccccCCCCCcHHHHHHHHHHHH
Confidence 76543 223334556777777777531 234689999999999999999863 345789999999999999
Q ss_pred hcCCC
Q 020097 308 LLEEP 312 (331)
Q Consensus 308 ll~~~ 312 (331)
..++.
T Consensus 290 ~~g~~ 294 (348)
T cd02889 290 AAGEP 294 (348)
T ss_pred hcCCC
Confidence 87764
No 24
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.86 E-value=6.6e-20 Score=186.82 Aligned_cols=258 Identities=15% Similarity=0.037 Sum_probs=181.9
Q ss_pred HHHHhhhHHhhcCCC-CCcChHHHHHHHHHhccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCCCcHHHHHHHHH
Q 020097 21 LAHFAISGLCLLGAL-DRVDKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALA 99 (331)
Q Consensus 21 ~~y~~l~~L~lL~~~-~~~~~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~~~~~~~~~~~~~~~l~~Ty~Al~ 99 (331)
.++++|.+|.++|.. +.....+.++.|.+.... .+||. ...+. .+.++.|..+++
T Consensus 269 ~~~~~l~~l~~~g~~~~~~~~~~~l~~l~~~~~~-------~~~g~-~~~~~----------------~s~vWDTa~ai~ 324 (635)
T TIGR01507 269 AMFNALIALKILGMTQHDAFIKLGWEGIDLYGVE-------LDDSW-MFQAC----------------VSPVWDTALAVL 324 (635)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHheEe-------cCCce-EecCC----------------CCcHHHHHHHHH
Confidence 678889999888863 333456688888777652 22321 11111 257999999999
Q ss_pred HHHHhCCCCCcccHHHHHHHHHhccC-------------CCCCCcccc-cCCccChhHHHHHHHHHHHhCCCC----ccc
Q 020097 100 ILKAVGYNFANIDSKSILTSMRNLQQ-------------HDGSFMPIH-FGAEKDLRFVYCAAAICFLLEDWS----GMD 161 (331)
Q Consensus 100 ~L~~lg~~~~~~~~~~~~~~l~~~q~-------------~dG~f~~~~-~~~~~d~~~ty~al~~l~lL~~~~----~~~ 161 (331)
+|...|..-+....+++.+||.+.|. +.|||.... ..+-+|+.-|-.++.++..++... ...
T Consensus 325 AL~~ag~~~~~p~l~kA~~~L~~~Qi~~~~~w~~~~~~~~~GGW~f~~~~~~~pd~ddTa~~L~AL~~~~~~~~~~~~~~ 404 (635)
T TIGR01507 325 ALREAGLPADHDALVKAGEWLLDKQITVPGDWAVKRPNLEPGGWAFQFDNVYYPDVDDTAVVVWALNGLRLPDERRRRDA 404 (635)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHhhcccCCCCccccCCCCCCCccCCCCCCCCCCCchhHHHHHHHHHHcCCCccccchHH
Confidence 99988854344445899999999973 246664321 123468888888888877764221 246
Q ss_pred HHHHHHHHHhcCCCCCCcccCCC-------------------CCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHH
Q 020097 162 RERAKAYILNCQSYDGGFGLTPG-------------------SESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLP 222 (331)
Q Consensus 162 ~~~~~~~I~~~Q~~dGGFg~~p~-------------------~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~ 222 (331)
.+++++||+++||+||||+.... +.++...|..++.+|...+.... ...++
T Consensus 405 i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~~l~al~~~g~~~~----------~~~i~ 474 (635)
T TIGR01507 405 MTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTARVLECLGSFGYDDA----------WPVIE 474 (635)
T ss_pred HHHHHHHHHHhcCCCCCEecccCCcchhHHhcCCccccccccCCCCccHHHHHHHHHHHhCCCch----------hHHHH
Confidence 78999999999999999976321 23566779999999998775321 23578
Q ss_pred HHHHHHHhcCCCCccccCCCCCCCCcchhhHHHHHHHHhCCCC-CCCHHHHHHHHHhccCCCCCcCCC----------CC
Q 020097 223 LLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYN-LIDKEALRGFLLTCQSQYGGFGKC----------PG 291 (331)
Q Consensus 223 ~~~~wL~~~Q~~dGGf~gr~~k~~D~~yt~~~~a~L~lL~~~~-~~~~~~~~~~L~~~Q~~~GGf~~~----------p~ 291 (331)
++++||.+.|++||||-|+.+ ..++.-|..++.+|...|... ...++++++||.++|++||||+.. +.
T Consensus 475 rav~~L~~~Q~~dG~W~g~wg-~~~~Y~T~~al~aL~~~g~~~~~~~i~rAv~wL~~~Q~~DGGWge~~~sy~~~~~~g~ 553 (635)
T TIGR01507 475 RAVEYLKREQEPDGSWFGRWG-VNYLYGTGAVLSALKAVGIDTREPYIQKALAWLESHQNPDGGWGEDCRSYEDPAYAGK 553 (635)
T ss_pred HHHHHHHHccCCCCCCccCCC-CccccHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCCCCCcccccccccCC
Confidence 999999999999999977744 233333445566666555321 123689999999999999999853 12
Q ss_pred CCCCHHHHHHHHHHHHhcCCCC
Q 020097 292 DLPDLYHSFYGYTAFSLLEEPG 313 (331)
Q Consensus 292 ~~~D~~hT~~al~aLsll~~~~ 313 (331)
..+|+..|.++|.||...+...
T Consensus 554 g~s~~s~TA~AL~AL~~ag~~~ 575 (635)
T TIGR01507 554 GASTASQTAWALIALIAAGRAE 575 (635)
T ss_pred CCCcHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999887653
No 25
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=99.86 E-value=2e-20 Score=161.14 Aligned_cols=226 Identities=16% Similarity=0.166 Sum_probs=170.3
Q ss_pred CcChHHHHHHHHHhccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCCCcHHHHHHHHHHHHHhCCCCCcccHHHH
Q 020097 37 RVDKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSI 116 (331)
Q Consensus 37 ~~~~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~~~~~~~~~~~~~~~l~~Ty~Al~~L~~lg~~~~~~~~~~~ 116 (331)
.++.+++++||..+|+ .||||+=..+-+ ..+..||+||.++.+||.++++ ++++
T Consensus 5 ~i~l~rvi~fi~~Rrh--------edGGy~f~~~Lp----------------dti~~TyYAi~i~s~lg~evPr--~Ekt 58 (274)
T COG1689 5 YINLNRVIEFIEKRRH--------EDGGYCFVSQLP----------------DTINDTYYAIKIYSLLGHEVPR--KEKT 58 (274)
T ss_pred hhhHHHHHHHHHHhhc--------CCCCeEEeccCc----------------chhhhhhhhhhhhhhcCCcCch--HHHH
Confidence 4688999999999996 678877433333 3589999999999999988754 7899
Q ss_pred HHHHHhc-cCCCCCCccc-------------------------c--------cC------CccChhHHHHHHHHHHHhCC
Q 020097 117 LTSMRNL-QQHDGSFMPI-------------------------H--------FG------AEKDLRFVYCAAAICFLLED 156 (331)
Q Consensus 117 ~~~l~~~-q~~dG~f~~~-------------------------~--------~~------~~~d~~~ty~al~~l~lL~~ 156 (331)
++||.+. |..-+++... + .+ ...-++.|||...++.+.|.
T Consensus 59 iefL~d~~qt~~~~~a~~~~~l~~lg~~d~~r~~~~l~~~~~~~~e~Kf~~~lggs~~f~t~~~Le~ty~~~~~l~~~n~ 138 (274)
T COG1689 59 IEFLYDQMQTAGVGVAMAIEFLRILGAKDLARNKMLLLFLKYNPLEEKFAVGLGGSEEFGTATPLEATYWMMSALNMVNY 138 (274)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcccccchhhHHHHHhhcCchhHHHhhhcCceeecCCCchHHHHHHHHHHHHHhCc
Confidence 9999993 3332333110 0 01 12358899999999999984
Q ss_pred CCcccHHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCc
Q 020097 157 WSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADG 236 (331)
Q Consensus 157 ~~~~~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dG 236 (331)
.-.+.+.+||++.|+.+|++.+.--.-++...||.|+-+|...+. .+.+..|-.. -.++|
T Consensus 139 ---~~~eE~k~~v~~~~re~~~g~~YGv~~pnt~~t~~aly~l~~k~~----------------~~~v~~Fe~~-c~~~G 198 (274)
T COG1689 139 ---EYLEEMKEKVIEFVREFGIGDAYGVTHPNTTMTYQALYTLGSKGP----------------KEEVRHFELC-CGDWG 198 (274)
T ss_pred ---CchHHHHHHHHHHhhhhccccccccCCcchHHHHHHHHhhccccc----------------hHHHHhHHhc-cccCC
Confidence 355788889999999998877765555677788887777665543 3345566555 44689
Q ss_pred cccCCCCCCC-CcchhhHHHHHHHHhCCCCCCCHHHHHHHHHhccCCCCCcCCCC-CCCCCHHHHHHHHHHHHhcC
Q 020097 237 GFQGRANKPS-DTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCP-GDLPDLYHSFYGYTAFSLLE 310 (331)
Q Consensus 237 Gf~gr~~k~~-D~~yt~~~~a~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~~~p-~~~~D~~hT~~al~aLsll~ 310 (331)
||+-.|+..+ =.-=||+++.+|.+|+... ..++.++||.+.||++|||+.+- ...+.+..||+|++.|..+-
T Consensus 199 gf~~~P~syPPYiE~t~ya~r~lelL~~k~--~i~~~~rFI~slqN~nGGFRRS~~~GISt~e~tYrAl~~L~~l~ 272 (274)
T COG1689 199 GFTEVPNSYPPYIEPTFYALRGLELLGGKY--CISDHIRFIRSLQNQNGGFRRSYELGISTFENTYRALASLASLH 272 (274)
T ss_pred CcccCCCCCCCccchHHHHHhHHHHHccCc--CchHHHHHHHHhhcCCCCeeeeEeccccchHHHHHHHHHHHHHh
Confidence 9999999753 3334688999999999753 45889999999999999999875 67899999999999998763
No 26
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.86 E-value=1.1e-19 Score=185.16 Aligned_cols=249 Identities=16% Similarity=0.120 Sum_probs=172.2
Q ss_pred hhhhHHHHHhhhHHhhcCCCC-CcChHHHHHHHHHhccCCCCC-----CCCCCCCccccCCCCCCCCCCCCCCCccCCCC
Q 020097 16 INRITLAHFAISGLCLLGALD-RVDKDAVSDWVLSLQAHPSNK-----ADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGS 89 (331)
Q Consensus 16 ~~r~~~~y~~l~~L~lL~~~~-~~~~~~~~~~i~~~q~~~~~~-----~~~~dg~~ggf~~~~~~~~~~~~~~~~~~~~~ 89 (331)
.+.+|-+-|++.+|...|..+ ....++..+||.++|....-. .....|||+ |.-.+. -.|
T Consensus 313 ~s~vWDTa~ai~AL~~ag~~~~~p~l~kA~~~L~~~Qi~~~~~w~~~~~~~~~GGW~-f~~~~~-------------~~p 378 (635)
T TIGR01507 313 VSPVWDTALAVLALREAGLPADHDALVKAGEWLLDKQITVPGDWAVKRPNLEPGGWA-FQFDNV-------------YYP 378 (635)
T ss_pred CCcHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhcccCCCCccccCCCCCCCccC-CCCCCC-------------CCC
Confidence 568899999999998888432 223478999999999732100 011234443 221110 127
Q ss_pred cHHHHHHHHHHHHHhCCCCC---cccHHHHHHHHHhccCCCCCCccccc------------C------CccChhHHHHHH
Q 020097 90 NLASTYCALAILKAVGYNFA---NIDSKSILTSMRNLQQHDGSFMPIHF------------G------AEKDLRFVYCAA 148 (331)
Q Consensus 90 ~l~~Ty~Al~~L~~lg~~~~---~~~~~~~~~~l~~~q~~dG~f~~~~~------------~------~~~d~~~ty~al 148 (331)
.+.+|-.++.+|..++.+-+ ....+++++||.++|++||||..... + +.+++..|-.++
T Consensus 379 d~ddTa~~L~AL~~~~~~~~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~~l 458 (635)
T TIGR01507 379 DVDDTAVVVWALNGLRLPDERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTARVL 458 (635)
T ss_pred CchhHHHHHHHHHHcCCCccccchHHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCCccccccccCCCCccHHHHHH
Confidence 89999999999988753211 12346899999999999999964221 0 112333344444
Q ss_pred HHHHHhCC-CCcccHHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHH
Q 020097 149 AICFLLED-WSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSW 227 (331)
Q Consensus 149 ~~l~lL~~-~~~~~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~w 227 (331)
.++...+. .....++++++||++.|++||||-+..+ ..+...|..|+.+|...|.... ...++++++|
T Consensus 459 ~al~~~g~~~~~~~i~rav~~L~~~Q~~dG~W~g~wg-~~~~Y~T~~al~aL~~~g~~~~----------~~~i~rAv~w 527 (635)
T TIGR01507 459 ECLGSFGYDDAWPVIERAVEYLKREQEPDGSWFGRWG-VNYLYGTGAVLSALKAVGIDTR----------EPYIQKALAW 527 (635)
T ss_pred HHHHHhCCCchhHHHHHHHHHHHHccCCCCCCccCCC-CccccHHHHHHHHHHHcCCCcc----------cHHHHHHHHH
Confidence 44544442 1234578999999999999999733333 3445567888888888775321 3458899999
Q ss_pred HHhcCCCCccccCC----------CCCCCCcchhhHHHHHHHHhCCCCCCCHHHHHHHHHhccCCCCCcCCC
Q 020097 228 CLQRQAADGGFQGR----------ANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKC 289 (331)
Q Consensus 228 L~~~Q~~dGGf~gr----------~~k~~D~~yt~~~~a~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~~~ 289 (331)
|+++|++||||... ..+.+|+..|.|++.+|...+..+...++++++||.++|+++|||...
T Consensus 528 L~~~Q~~DGGWge~~~sy~~~~~~g~g~s~~s~TA~AL~AL~~ag~~~~~~I~rav~~L~~~Q~~dG~W~e~ 599 (635)
T TIGR01507 528 LESHQNPDGGWGEDCRSYEDPAYAGKGASTASQTAWALIALIAAGRAESEAARRGVQYLVETQRPDGGWDEP 599 (635)
T ss_pred HHHhcCCCCCCCCCCcccccccccCCCCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCCCCCCCc
Confidence 99999999999743 123578888999999999988654445789999999999999999875
No 27
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.85 E-value=6.7e-20 Score=174.79 Aligned_cols=248 Identities=18% Similarity=0.144 Sum_probs=174.7
Q ss_pred hhhHHHHHhhhHHhhcCCC--CCcChHHHHHHHHHhccCCCCCC-------CCCCCCccccCCCCCCCCCCCCCCCccCC
Q 020097 17 NRITLAHFAISGLCLLGAL--DRVDKDAVSDWVLSLQAHPSNKA-------DLTNGEFYGFHGSPSSQLHPDDNGVLMHN 87 (331)
Q Consensus 17 ~r~~~~y~~l~~L~lL~~~--~~~~~~~~~~~i~~~q~~~~~~~-------~~~dg~~ggf~~~~~~~~~~~~~~~~~~~ 87 (331)
+.++.+.+++.+|...+.. .....++.++||.+.|. +.... ...+|+|+ |.... ..
T Consensus 23 ~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q~-~~~~~~~~~~~~~~~~Ggw~-y~~~~-------------~~ 87 (348)
T cd02889 23 SQVWDTALALQALLEAGLAPEFDPALKKALEWLLKSQI-RDNPDDWKVKYRHLRKGGWA-FSTAN-------------QG 87 (348)
T ss_pred CchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhcCC-CCCCCchhhcCCCCCCCcCc-ccCcC-------------CC
Confidence 6678999999999998863 23346889999999983 22111 02344433 21100 01
Q ss_pred CCcHHHHHHHHHHHHHhCCCC------CcccHHHHHHHHHhccCCCCCCcccccC------------------CccChhH
Q 020097 88 GSNLASTYCALAILKAVGYNF------ANIDSKSILTSMRNLQQHDGSFMPIHFG------------------AEKDLRF 143 (331)
Q Consensus 88 ~~~l~~Ty~Al~~L~~lg~~~------~~~~~~~~~~~l~~~q~~dG~f~~~~~~------------------~~~d~~~ 143 (331)
.++...|..++.+|..++... ..-..+++++||.+.|++||+|...... ..+++..
T Consensus 88 ~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (348)
T cd02889 88 YPDSDDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVEC 167 (348)
T ss_pred CCCCCChHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhcCCccCCCCcch
Confidence 234567888888887776321 1112367899999999999999642110 1234556
Q ss_pred HHHHHHHHHHhCCCCc-------ccHHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCC
Q 020097 144 VYCAAAICFLLEDWSG-------MDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSS 216 (331)
Q Consensus 144 ty~al~~l~lL~~~~~-------~~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~ 216 (331)
|..++.+|..++.... ..++++++||+++|++||||.... ...+...|+.++.+|..+|....
T Consensus 168 Ta~~l~aL~~~~~~~~~~~~~~~~~i~~a~~~L~~~q~~dG~w~~~~-~~~~~y~ta~a~~aL~~~g~~~~--------- 237 (348)
T cd02889 168 TGSVLEALGLFGKLYPEHRREIDPAIRRAVKYLEREQEPDGSWYGRW-GVCFIYGTWFALEALAAAGEDEN--------- 237 (348)
T ss_pred HHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHhCCCCCCccccC-CCcchHHHHHHHHHHHHcCCCcC---------
Confidence 7777777777764322 246789999999999999996543 23466678889999998886421
Q ss_pred CCCCHHHHHHHHHhcCCCCccccCCC----------CCCCCcchhhHHHHHHHHhCCCCCCCHHHHHHHHHhccCCCCCc
Q 020097 217 SIIDLPLLLSWCLQRQAADGGFQGRA----------NKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGF 286 (331)
Q Consensus 217 ~~~~~~~~~~wL~~~Q~~dGGf~gr~----------~k~~D~~yt~~~~a~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf 286 (331)
...++++++||+++|.+||||...+ ...+|+..|.+++.+|...+..+....+++++||.++|+++|||
T Consensus 238 -~~~~~~~~~~L~~~Q~~dG~w~~~~~~~~~~~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~v~~a~~wL~~~Q~~dG~f 316 (348)
T cd02889 238 -SPYVRKACDWLLSKQNPDGGWGESYESYEDPSYAGGGRSTVVQTAWALLALMAAGEPDSEAVKRGVKYLLNTQQEDGDW 316 (348)
T ss_pred -cHHHHHHHHHHHHccCCCCCcCCcccccccccccCCCCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCCCCc
Confidence 3457899999999999999997532 23568889999999888877654455789999999999999999
Q ss_pred CCCC
Q 020097 287 GKCP 290 (331)
Q Consensus 287 ~~~p 290 (331)
...+
T Consensus 317 ~~~~ 320 (348)
T cd02889 317 PQEE 320 (348)
T ss_pred CCce
Confidence 8754
No 28
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.85 E-value=3.5e-20 Score=188.92 Aligned_cols=265 Identities=18% Similarity=0.101 Sum_probs=179.4
Q ss_pred HHHhhhHHhhcCCCC-CcChHHHHHHHHHhccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCCCcHHHHHHHHHH
Q 020097 22 AHFAISGLCLLGALD-RVDKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAI 100 (331)
Q Consensus 22 ~y~~l~~L~lL~~~~-~~~~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~~~~~~~~~~~~~~~l~~Ty~Al~~ 100 (331)
+..+++.|.+++... ....++.++.|.+..... ++| |..-+++ +.+ ++.|-.|+++
T Consensus 259 ~~~~~~~l~~~g~~~~~p~~~k~l~~l~~~~~~~------~~~---g~~~q~~-------------~s~-~WDTala~~A 315 (634)
T TIGR03463 259 VNGVLNMLAWFAVNPDGPEVAAHLEGLEDYRYED------DDR---GLRYNGY-------------NSS-EWDTAFAVQA 315 (634)
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhEEEc------CCC---CEEEeeC-------------CCC-chhHHHHHHH
Confidence 556788888888752 123467778887766411 222 1111111 123 4999999999
Q ss_pred HHHhCCCCCc--ccHHHHHHHHHhccC--------------CCCCCcccc-cCCccChhHHHHHHHHHHHhCCC------
Q 020097 101 LKAVGYNFAN--IDSKSILTSMRNLQQ--------------HDGSFMPIH-FGAEKDLRFVYCAAAICFLLEDW------ 157 (331)
Q Consensus 101 L~~lg~~~~~--~~~~~~~~~l~~~q~--------------~dG~f~~~~-~~~~~d~~~ty~al~~l~lL~~~------ 157 (331)
|...|..-++ ...+++.+||.+.|. ++|||.... ..+-+|...|--++.++..+...
T Consensus 316 L~e~g~~~~~~~~~l~kA~~wL~~~Q~~~~~gd~~~~~~~~~~GGW~f~~~~~~~pdsD~Ta~~L~Al~~~~~~~~~~~~ 395 (634)
T TIGR03463 316 LAATPETAGRHRRMLERAARFLEANQMLEDTAEPQRFFRDPAKGGWCFSDGDHGWPVSDCTAEALSASLVLEPLGLNPEE 395 (634)
T ss_pred HHHcCCCchhhhHHHHHHHHHHHHhcCCcCCCCchhcCCCCCCCccccccCCCCCCccccHHHHHHHHHHHhhcCCcccc
Confidence 9876631111 123689999999994 457775432 12334555565566555554321
Q ss_pred --CcccHHHHHHHHHhcCCCCCCcccCC---------------------CCCCChhhHHHHHHHHHHcCCccccccccCC
Q 020097 158 --SGMDRERAKAYILNCQSYDGGFGLTP---------------------GSESHGGGTYCAVASLRLMGFIEDNVLSKNT 214 (331)
Q Consensus 158 --~~~~~~~~~~~I~~~Q~~dGGFg~~p---------------------~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~ 214 (331)
+....+++++||+++||.||||+... .+.+++..|..||.+|..+++..+....+..
T Consensus 396 ~~~~~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i 475 (634)
T TIGR03463 396 RVPQARLQDAVEFILSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRI 475 (634)
T ss_pred cccHHHHHHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHH
Confidence 12356789999999999999999432 1346788899999999998754321100000
Q ss_pred CCCCCCHHHHHHHHHhcCCCCccccCCCCCCCCcchhhHHHHHHHHhCCC-CCCCHHHHHHHHHhccCCCCCcCCC----
Q 020097 215 SSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGY-NLIDKEALRGFLLTCQSQYGGFGKC---- 289 (331)
Q Consensus 215 ~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~~yt~~~~a~L~lL~~~-~~~~~~~~~~~L~~~Q~~~GGf~~~---- 289 (331)
...++++++||++.|++||||.++.+ ...+.-|++++.+|..+|.. ....++++++||+++|++||||+..
T Consensus 476 ---~~ai~rav~~L~~~Q~~dGsW~g~Wg-~~~~Y~T~~al~aL~~~G~~~~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~ 551 (634)
T TIGR03463 476 ---TRAISRGVRFLRSRQREDGSFPGSWG-VCFTYGTFHGVMGLRAAGASPDDMALQRAAAWLRSYQRADGGWGEVYESC 551 (634)
T ss_pred ---HHHHHHHHHHHHHhcCCCCCccccCC-CCCcHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCccCccCcc
Confidence 12378899999999999999988754 34455678999999988853 2234789999999999999999753
Q ss_pred ------CCCCCCHHHHHHHHHHHHhcCCCC
Q 020097 290 ------PGDLPDLYHSFYGYTAFSLLEEPG 313 (331)
Q Consensus 290 ------p~~~~D~~hT~~al~aLsll~~~~ 313 (331)
++..++++.|++||.+|...+...
T Consensus 552 ~~~~y~~~~~S~~~~TA~Al~aL~~~g~~~ 581 (634)
T TIGR03463 552 LQARYVEGKQSQAVMTSWALLALAEAGEGG 581 (634)
T ss_pred ccccccCCCCCcHHHHHHHHHHHHHcCCcC
Confidence 445789999999999999887654
No 29
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.84 E-value=1.9e-20 Score=190.88 Aligned_cols=182 Identities=22% Similarity=0.231 Sum_probs=144.9
Q ss_pred hHHHHHHHHHhccCCCCCCCCCCCCccccCCCCCCC----CCCCCC-CCccCCCCcHHHHHHHHHHHHHhCCCCCc----
Q 020097 40 KDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQ----LHPDDN-GVLMHNGSNLASTYCALAILKAVGYNFAN---- 110 (331)
Q Consensus 40 ~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~----~~~~~~-~~~~~~~~~l~~Ty~Al~~L~~lg~~~~~---- 110 (331)
.++.++||+++|+ +||||+.|.+..+.. +|+.+. ..++.|.+++.+|-.+|.+|..++.....
T Consensus 402 l~~av~~Ll~~Qn--------~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~ 473 (634)
T TIGR03463 402 LQDAVEFILSRQN--------EDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDG 473 (634)
T ss_pred HHHHHHHHHHhcC--------CCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhh
Confidence 3568999999998 689999998766433 244432 34567899999999999999998753321
Q ss_pred -c--cHHHHHHHHHhccCCCCCCcccccCCccChhHHHHHHHHHHHhCCC-CcccHHHHHHHHHhcCCCCCCcccC----
Q 020097 111 -I--DSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDW-SGMDRERAKAYILNCQSYDGGFGLT---- 182 (331)
Q Consensus 111 -~--~~~~~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~-~~~~~~~~~~~I~~~Q~~dGGFg~~---- 182 (331)
+ -.+++++||++.|++||+|.. .+ +......|++++.+|..++.. ....++++++||+++|++||||+..
T Consensus 474 ~i~~ai~rav~~L~~~Q~~dGsW~g-~W-g~~~~Y~T~~al~aL~~~G~~~~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~ 551 (634)
T TIGR03463 474 RITRAISRGVRFLRSRQREDGSFPG-SW-GVCFTYGTFHGVMGLRAAGASPDDMALQRAAAWLRSYQRADGGWGEVYESC 551 (634)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCccc-cC-CCCCcHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCccCccCcc
Confidence 1 136799999999999999964 35 445666889999999888753 4466899999999999999999863
Q ss_pred ------CCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCccccCCC
Q 020097 183 ------PGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRA 242 (331)
Q Consensus 183 ------p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr~ 242 (331)
++.+|+...|++||.+|...|..+ ...++++++||+++|.+||||...+
T Consensus 552 ~~~~y~~~~~S~~~~TA~Al~aL~~~g~~~-----------~~~i~rgi~~L~~~Q~~dG~W~~~~ 606 (634)
T TIGR03463 552 LQARYVEGKQSQAVMTSWALLALAEAGEGG-----------HDAVQRGVAWLRSRQQEDGRWPREP 606 (634)
T ss_pred ccccccCCCCCcHHHHHHHHHHHHHcCCcC-----------CHHHHHHHHHHHHhCCCCCCCCCCc
Confidence 345799999999999999988654 3458899999999999999998654
No 30
>PLN02993 lupeol synthase
Probab=99.84 E-value=1.9e-20 Score=191.38 Aligned_cols=182 Identities=19% Similarity=0.185 Sum_probs=146.1
Q ss_pred hHHHHHHHHHhccCCCCCCCCCCCCccccCCCCCCCC----CCCC-CCCccCCCCcHHHHHHHHHHHHHhCCCC-----C
Q 020097 40 KDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQL----HPDD-NGVLMHNGSNLASTYCALAILKAVGYNF-----A 109 (331)
Q Consensus 40 ~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~----~~~~-~~~~~~~~~~l~~Ty~Al~~L~~lg~~~-----~ 109 (331)
..+.++||+++|| +||||+.|...++..+ |+.+ .++++.|.+.+.+|-.+|.+|..++... +
T Consensus 515 l~~av~wlL~mQn--------~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ 586 (763)
T PLN02993 515 LYDSVNLLLSLQS--------ENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDHRTK 586 (763)
T ss_pred HHHHHHHHHhhcc--------CCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHHhcccCcchhhh
Confidence 3568999999998 6899999998776543 5554 4578899999999999999999987421 1
Q ss_pred ccc--HHHHHHHHHhccCCCCCCcccccCCccChhHHHHHHHHHHHhCCCC--cccHHHHHHHHHhcCCCCCCcccCC--
Q 020097 110 NID--SKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWS--GMDRERAKAYILNCQSYDGGFGLTP-- 183 (331)
Q Consensus 110 ~~~--~~~~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~--~~~~~~~~~~I~~~Q~~dGGFg~~p-- 183 (331)
.++ .+++++||.+.|++||||.. .+ +...+..|++++.+|...+... ...++|+++||+++|++|||||...
T Consensus 587 ei~~~i~rAv~yL~~~Q~~DGSW~G-~W-gv~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~~DGGWGEs~~S 664 (763)
T PLN02993 587 EIIKSIEKAVQFIESKQTPDGSWYG-NW-GICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQRDDGGWGESYLS 664 (763)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCccc-cc-ccccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCCCCcCcCcCc
Confidence 122 36899999999999999974 45 5556678888999998887542 2578999999999999999999852
Q ss_pred ----------CCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCccccC
Q 020097 184 ----------GSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQG 240 (331)
Q Consensus 184 ----------~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~g 240 (331)
+..|++..|.+|+.+|...|..+. ....++++++||.++|.++|+|.-
T Consensus 665 ~~~~~y~~~~~~~St~~qTAwAllaL~~aG~~~~---------~~~~l~Rgi~~L~~~Q~~~G~W~q 722 (763)
T PLN02993 665 CPEQRYIPLEGNRSNLVQTAWAMMGLIHAGQAER---------DLIPLHRAAKLIITSQLENGDFPQ 722 (763)
T ss_pred CCCcccccCCCCCCchhhHHHHHHHHHHcCCCCC---------CcHHHHHHHHHHHhccCCCCCCCC
Confidence 246899999999999999986431 023588999999999999999874
No 31
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.83 E-value=6.2e-19 Score=180.75 Aligned_cols=264 Identities=19% Similarity=0.139 Sum_probs=177.0
Q ss_pred HHHHhhhHHhhcCCCCCcChHHHHHHHHHhccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCCCcHHHHHHHHHH
Q 020097 21 LAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAI 100 (331)
Q Consensus 21 ~~y~~l~~L~lL~~~~~~~~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~~~~~~~~~~~~~~~l~~Ty~Al~~ 100 (331)
.+-+++-+|..+|..+....++.++.|.+..... +||+. ...+ +.+.++.|-.++++
T Consensus 261 ~~~l~~lal~~~g~~~~~~~~~~l~~l~~~~~~~------~~g~~---~~~~--------------~~s~~wDTala~~A 317 (634)
T cd02892 261 PKANNMLALWVLGYPDSPAFKRHLERIDDFLWLG------PEGMK---MCQT--------------NGSQVWDTALAVQA 317 (634)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcEEEe------cCCcE---EEcC--------------CCCchHHHHHHHHH
Confidence 3456666777777633334566777776655311 23432 1111 13579999999999
Q ss_pred HHHhCCC-CCcccHHHHHHHHHhccC--C------------CCCCcccc-cCCccChhHHHHHHHHHHHhCCCC------
Q 020097 101 LKAVGYN-FANIDSKSILTSMRNLQQ--H------------DGSFMPIH-FGAEKDLRFVYCAAAICFLLEDWS------ 158 (331)
Q Consensus 101 L~~lg~~-~~~~~~~~~~~~l~~~q~--~------------dG~f~~~~-~~~~~d~~~ty~al~~l~lL~~~~------ 158 (331)
|...|.. -.....+++++||.+.|. + .|||.... ..+.+|+..|-.++.++..++...
T Consensus 318 L~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~gdw~~~~~~~~~GGW~fs~~~~~~pd~d~Ta~~l~AL~~~~~~~~~~~~~ 397 (634)
T cd02892 318 LLEAGLAPEFDPALKKALDWLLESQILDNPGDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKALLRLQELPPFGEKV 397 (634)
T ss_pred HHHcCCCccchHHHHHHHHHHHHHHcCCCCCchhhhCCCCCCCCCCCCCCCCCCCCcCchHHHHHHHHHhhccCCcchhh
Confidence 9887743 111234789999999995 3 45654221 123355666666666666665321
Q ss_pred -cccHHHHHHHHHhcCCCCCCcccC-CC--------------------CCCChhhHHHHHHHHHHcCCccccccccCCCC
Q 020097 159 -GMDRERAKAYILNCQSYDGGFGLT-PG--------------------SESHGGGTYCAVASLRLMGFIEDNVLSKNTSS 216 (331)
Q Consensus 159 -~~~~~~~~~~I~~~Q~~dGGFg~~-p~--------------------~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~ 216 (331)
...++++++||+++|++||||+.. +. +.+++..|+.+|.+|..++...+....+
T Consensus 398 ~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r~~---- 473 (634)
T cd02892 398 SRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGLFGKLYPGHRRE---- 473 (634)
T ss_pred HHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHHHHHHHHHhcccCcchHHH----
Confidence 234688999999999999999842 11 1367778999999999988654210000
Q ss_pred CCCCHHHHHHHHHhcCCCCccccCCCCCCCCcchhhHHHHHHHHhCCC-C-CCCHHHHHHHHHhccCCCCCcCCCC----
Q 020097 217 SIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGY-N-LIDKEALRGFLLTCQSQYGGFGKCP---- 290 (331)
Q Consensus 217 ~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~~yt~~~~a~L~lL~~~-~-~~~~~~~~~~L~~~Q~~~GGf~~~p---- 290 (331)
-...++++++||.+.|.+||||.++.+ ...+..|++++.+|..+|.. . ....+++++||.++|+++|||+..+
T Consensus 474 i~~~i~rAv~~L~~~Q~~DGsW~g~wg-~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~~~L~s~Q~~DGgWge~~~s~~ 552 (634)
T cd02892 474 IDPAIRRAVKYLLREQEPDGSWYGRWG-VCYIYGTWFALEALAAAGEDYENSPYIRKACDFLLSKQNPDGGWGESYLSYE 552 (634)
T ss_pred HHHHHHHHHHHHHHccCCCCCccccCC-CccHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHhcCCCCCCCCCcccccc
Confidence 012478999999999999999987653 23334466688888888753 2 2346899999999999999998532
Q ss_pred ------CCCCCHHHHHHHHHHHHhcCCC
Q 020097 291 ------GDLPDLYHSFYGYTAFSLLEEP 312 (331)
Q Consensus 291 ------~~~~D~~hT~~al~aLsll~~~ 312 (331)
+..+++..|++||.+|...++.
T Consensus 553 ~~~~~~~~~s~~~~TA~AllaLl~~g~~ 580 (634)
T cd02892 553 DKSYAGGGRSTVVQTAWALLALMAAGEP 580 (634)
T ss_pred CcccCCCCCCcHHHHHHHHHHHHHcCCC
Confidence 3467899999999999887764
No 32
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.83 E-value=3.6e-19 Score=182.50 Aligned_cols=253 Identities=18% Similarity=0.134 Sum_probs=177.8
Q ss_pred hhhhhhhHHHHHhhhHHhhcCCCCC--cChHHHHHHHHHhccC-CCC-----CCCCCCCCccccCCCCCCCCCCCCCCCc
Q 020097 13 YQEINRITLAHFAISGLCLLGALDR--VDKDAVSDWVLSLQAH-PSN-----KADLTNGEFYGFHGSPSSQLHPDDNGVL 84 (331)
Q Consensus 13 ~~d~~r~~~~y~~l~~L~lL~~~~~--~~~~~~~~~i~~~q~~-~~~-----~~~~~dg~~ggf~~~~~~~~~~~~~~~~ 84 (331)
..+.+.+|-+=+++.+|.-.|.... ...++.++||.++|+. +.- ......|||+ |...+
T Consensus 302 ~~~~s~~wDTala~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~gdw~~~~~~~~~GGW~-fs~~~------------ 368 (634)
T cd02892 302 QTNGSQVWDTALAVQALLEAGLAPEFDPALKKALDWLLESQILDNPGDWKVKYRHLRKGGWA-FSTAN------------ 368 (634)
T ss_pred cCCCCchHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHHcCCCCCchhhhCCCCCCCCCC-CCCCC------------
Confidence 3456789999999999977774322 2346899999999961 100 0001234443 22111
Q ss_pred cCCCCcHHHHHHHHHHHHHhCCCCC---ccc---HHHHHHHHHhccCCCCCCcccccC--------------------Cc
Q 020097 85 MHNGSNLASTYCALAILKAVGYNFA---NID---SKSILTSMRNLQQHDGSFMPIHFG--------------------AE 138 (331)
Q Consensus 85 ~~~~~~l~~Ty~Al~~L~~lg~~~~---~~~---~~~~~~~l~~~q~~dG~f~~~~~~--------------------~~ 138 (331)
...|.+..|..++.+|..++.... .++ .+++++||.++|++||+|...... +.
T Consensus 369 -~~~pd~d~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~ 447 (634)
T cd02892 369 -QGYPDSDDTAEALKALLRLQELPPFGEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDP 447 (634)
T ss_pred -CCCCCcCchHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchhhhcccccCC
Confidence 112567789999999988874321 122 367899999999999999642110 12
Q ss_pred cChhHHHHHHHHHHHhCCCCc-------ccHHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCc-ccccc
Q 020097 139 KDLRFVYCAAAICFLLEDWSG-------MDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFI-EDNVL 210 (331)
Q Consensus 139 ~d~~~ty~al~~l~lL~~~~~-------~~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~-~~~~~ 210 (331)
+.+..|..++.+|.+++...+ ..++++++||+++|++||||.+..+ ..+...|+.|+.+|..+|.. ..
T Consensus 448 ~~~~~Ta~~l~aL~~~~~~~~~~r~~i~~~i~rAv~~L~~~Q~~DGsW~g~wg-~~~~Y~T~~al~AL~~~G~~~~~--- 523 (634)
T cd02892 448 PYVECTGSVLEALGLFGKLYPGHRREIDPAIRRAVKYLLREQEPDGSWYGRWG-VCYIYGTWFALEALAAAGEDYEN--- 523 (634)
T ss_pred CCcchHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHccCCCCCccccCC-CccHHHHHHHHHHHHHhCCcccC---
Confidence 344567788888888765432 2478999999999999999966443 45566788899999998865 21
Q ss_pred ccCCCCCCCCHHHHHHHHHhcCCCCccccCCC----------CCCCCcchhhHHHHHHHHhCCCCCCCHHHHHHHHHhcc
Q 020097 211 SKNTSSSIIDLPLLLSWCLQRQAADGGFQGRA----------NKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQ 280 (331)
Q Consensus 211 ~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr~----------~k~~D~~yt~~~~a~L~lL~~~~~~~~~~~~~~L~~~Q 280 (331)
...++++++||+++|++||||...+ ...+++..|.|++.+|...+..+...++++++||.++|
T Consensus 524 -------~~~i~~a~~~L~s~Q~~DGgWge~~~s~~~~~~~~~~~s~~~~TA~AllaLl~~g~~~~~~i~r~i~wL~~~Q 596 (634)
T cd02892 524 -------SPYIRKACDFLLSKQNPDGGWGESYLSYEDKSYAGGGRSTVVQTAWALLALMAAGEPDSEAVERGIKYLLNTQ 596 (634)
T ss_pred -------cHHHHHHHHHHHhcCCCCCCCCCccccccCcccCCCCCCcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHcC
Confidence 3467899999999999999997432 23456778888888887777654445789999999999
Q ss_pred CCCCCcCCCC
Q 020097 281 SQYGGFGKCP 290 (331)
Q Consensus 281 ~~~GGf~~~p 290 (331)
+.+|||...+
T Consensus 597 ~~~G~w~~~~ 606 (634)
T cd02892 597 LPDGDWPQEE 606 (634)
T ss_pred CCCCCCCCcc
Confidence 9999998743
No 33
>PLN03012 Camelliol C synthase
Probab=99.82 E-value=7.9e-20 Score=186.55 Aligned_cols=182 Identities=19% Similarity=0.166 Sum_probs=142.8
Q ss_pred hHHHHHHHHHhccCCCCCCCCCCCCccccCCCCCCCC----C-CCCCCCccCCCCcHHHHHHHHHHHHHhCCCCC-----
Q 020097 40 KDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQL----H-PDDNGVLMHNGSNLASTYCALAILKAVGYNFA----- 109 (331)
Q Consensus 40 ~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~----~-~~~~~~~~~~~~~l~~Ty~Al~~L~~lg~~~~----- 109 (331)
..+.++||+++|+ +||||+.|....+..| | ....+.++.|.+...+|-.+|.+|.+++....
T Consensus 515 l~~av~wlL~mQn--------~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~ 586 (759)
T PLN03012 515 LHDAVNILLSLQS--------KNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTE 586 (759)
T ss_pred HHHHHHHHHhccC--------CCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchh
Confidence 3578999999998 6899999998776643 3 22244568899999999999999999874221
Q ss_pred ccc--HHHHHHHHHhccCCCCCCcccccCCccChhHHHHHHHHHHHhCCC--CcccHHHHHHHHHhcCCCCCCcccCC--
Q 020097 110 NID--SKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDW--SGMDRERAKAYILNCQSYDGGFGLTP-- 183 (331)
Q Consensus 110 ~~~--~~~~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~--~~~~~~~~~~~I~~~Q~~dGGFg~~p-- 183 (331)
.++ .+++++||++.|++||||.. .+ +-..+..|.++|.+|...+.. +...++|+++||++.|++|||||+..
T Consensus 587 ~i~~~i~rAv~~L~~~Q~~DGsW~G-~W-gv~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~~S 664 (759)
T PLN03012 587 EINAFIKKAAEYIENIQMLDGSWYG-NW-GICFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGESYLS 664 (759)
T ss_pred hhHHHHHHHHHHHHHhcCCCCCCcc-cc-cccCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCCCCC
Confidence 122 36799999999999999974 45 322344677788888887753 23568999999999999999999963
Q ss_pred ----------CCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCccccC
Q 020097 184 ----------GSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQG 240 (331)
Q Consensus 184 ----------~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~g 240 (331)
+..|++..|.+|+.+|...|..+.+ ...++++++||+++|.+||+|..
T Consensus 665 c~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~---------~~~i~Rg~~~Ll~~Q~~dG~W~q 722 (759)
T PLN03012 665 CPKKIYIAQEGEISNLVQTAWALMGLIHAGQAERD---------PIPLHRAAKLIINSQLENGDFPQ 722 (759)
T ss_pred CCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCC---------cHHHHHHHHHHHHcccCCCCCCC
Confidence 2459999999999999999875411 23589999999999999999974
No 34
>PLN02993 lupeol synthase
Probab=99.82 E-value=9.8e-19 Score=178.93 Aligned_cols=220 Identities=18% Similarity=0.132 Sum_probs=156.7
Q ss_pred CcHHHHHHHHHHHHHhCCC-CCcccHHHHHHHHHhccCC-----C----------CCCccc-ccCCccChhHHHHHHHHH
Q 020097 89 SNLASTYCALAILKAVGYN-FANIDSKSILTSMRNLQQH-----D----------GSFMPI-HFGAEKDLRFVYCAAAIC 151 (331)
Q Consensus 89 ~~l~~Ty~Al~~L~~lg~~-~~~~~~~~~~~~l~~~q~~-----d----------G~f~~~-~~~~~~d~~~ty~al~~l 151 (331)
+.+|.|-+++++|..-|.. -.....+++.+||++.|.. | |||... ...+-+|..-|--++.++
T Consensus 416 SqvWDTa~a~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sDdTAe~lka~ 495 (763)
T PLN02993 416 SQLWDTGFAIQALLASDLSDETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGWQVSDCTAEALKCC 495 (763)
T ss_pred CchHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCCCcCCchHHHHHHH
Confidence 6799999999999987742 1123357899999999862 2 555321 112345556666666544
Q ss_pred HHhCCCC---------cccHHHHHHHHHhcCCCCCCcccCCC---------------------CCCChhhHHHHHHHHHH
Q 020097 152 FLLEDWS---------GMDRERAKAYILNCQSYDGGFGLTPG---------------------SESHGGGTYCAVASLRL 201 (331)
Q Consensus 152 ~lL~~~~---------~~~~~~~~~~I~~~Q~~dGGFg~~p~---------------------~esh~~~Ty~AlaaL~l 201 (331)
.+|.... .....++++||++.||.||||+..-. +.+.+-.|..||.+|.+
T Consensus 496 l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~ 575 (763)
T PLN02993 496 MLLSMMPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVL 575 (763)
T ss_pred HHHhhCccccccccchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHH
Confidence 4443221 12457899999999999999988521 13567779999999999
Q ss_pred cCCccccccccCCCCCCCCHHHHHHHHHhcCCCCccccCCCCCCCCcchhhHHHHHHHHhCCCCC--CCHHHHHHHHHhc
Q 020097 202 MGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNL--IDKEALRGFLLTC 279 (331)
Q Consensus 202 lg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~~yt~~~~a~L~lL~~~~~--~~~~~~~~~L~~~ 279 (331)
+++..++...+.. ...++++++||.+.|.+||||.|+.+ ...+..|++++.+|...|.... ..++++++||+++
T Consensus 576 ~~~~~p~~r~~ei---~~~i~rAv~yL~~~Q~~DGSW~G~Wg-v~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~ 651 (763)
T PLN02993 576 FKQLYPDHRTKEI---IKSIEKAVQFIESKQTPDGSWYGNWG-ICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTI 651 (763)
T ss_pred hcccCcchhhhhH---HHHHHHHHHHHHHhcCCCCCcccccc-cccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh
Confidence 8764322211100 12478999999999999999998754 3344447788888888886422 3478999999999
Q ss_pred cCCCCCcCCCC------------CCCCCHHHHHHHHHHHHhcCCC
Q 020097 280 QSQYGGFGKCP------------GDLPDLYHSFYGYTAFSLLEEP 312 (331)
Q Consensus 280 Q~~~GGf~~~p------------~~~~D~~hT~~al~aLsll~~~ 312 (331)
|++||||+... +..|.++.|+||+.||...|+.
T Consensus 652 Q~~DGGWGEs~~S~~~~~y~~~~~~~St~~qTAwAllaL~~aG~~ 696 (763)
T PLN02993 652 QRDDGGWGESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLIHAGQA 696 (763)
T ss_pred cCCCCCcCcCcCcCCCcccccCCCCCCchhhHHHHHHHHHHcCCC
Confidence 99999998742 2468899999999999988764
No 35
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.82 E-value=4.2e-20 Score=147.85 Aligned_cols=109 Identities=28% Similarity=0.441 Sum_probs=91.8
Q ss_pred HHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHH--HHHHHhcCCCCccccCCCC
Q 020097 166 KAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLL--LSWCLQRQAADGGFQGRAN 243 (331)
Q Consensus 166 ~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~--~~wL~~~Q~~dGGf~gr~~ 243 (331)
|+||+++|++||||+.. +.++++..|++||.+|..++..+ +++++ ++||.++|++||||...+.
T Consensus 1 v~~L~~~Q~~dGgw~~~-~~~~~~~~T~~al~aL~~~g~~~-------------~~~~~~~~~~L~~~q~~dGg~~~~~~ 66 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGF-GGPSDVWDTAFALLALAALGEEP-------------DRDRAAAVEWLLSQQNPDGGWGSNPD 66 (113)
T ss_dssp HHHHHHHB-TTSSBBSS-TS-BEHHHHHHHHHHHHHHTSHH-------------CHHHHHHHHHHHHHB-TTSGBBSSTT
T ss_pred CHhhHHHcCCCCCCcCC-CCCCCHHHHHHHHHHHHHhCCcc-------------cHHHHHHHHHHHHhCCCCCCccCCCC
Confidence 68999999999999998 88899999999999999999765 36778 9999999999999999985
Q ss_pred C-CCCcchhhHHHHHHHHhCCCCC-CCHHHHHHHHHhccCCCCCcCC
Q 020097 244 K-PSDTCYAFWIGSVLRMLGGYNL-IDKEALRGFLLTCQSQYGGFGK 288 (331)
Q Consensus 244 k-~~D~~yt~~~~a~L~lL~~~~~-~~~~~~~~~L~~~Q~~~GGf~~ 288 (331)
+ .+|+.+|++++++|.+++..+. ...+++++||+++|+++|||+.
T Consensus 67 ~~~~~~~~t~~~l~~l~~~~~~~~~~~~~~a~~~l~~~Q~~dGg~~y 113 (113)
T PF13249_consen 67 GGPPDVYTTYVALAALELLGRPDDEEAVRKAVDWLLSCQNPDGGWGY 113 (113)
T ss_dssp TT-BSHHHHHHHHHHHHHHT-GGCHTTHCCHHHHHHHTB-TTSSB-S
T ss_pred CCCccHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCCc
Confidence 4 5799999999999999997543 4578999999999999999974
No 36
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.81 E-value=1.4e-18 Score=177.11 Aligned_cols=257 Identities=18% Similarity=0.113 Sum_probs=170.3
Q ss_pred hhhhHHHHHhhhHHhhcCC--CC--CcChHHHHHHHHHhccCCCCCCCCCCCCccccCCCC-CCCCCCCCCCCccCCCCc
Q 020097 16 INRITLAHFAISGLCLLGA--LD--RVDKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSP-SSQLHPDDNGVLMHNGSN 90 (331)
Q Consensus 16 ~~r~~~~y~~l~~L~lL~~--~~--~~~~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~-~~~~~~~~~~~~~~~~~~ 90 (331)
.+.+|-+=|++.+|.--|. .+ ....++.++||.++|+ ++.. .|.+.-++... ...|+++... .--|.
T Consensus 293 ~s~vWDTalai~AL~~ag~~~~~~~~~~i~ka~~wL~~~Q~-~~~~----~g~~~~~~~~~~pGgW~fs~~~---~~~Pd 364 (621)
T TIGR01787 293 GSQVWDTAFAIQALRESGDHRLPEFHPALVKAHEWLLLSQI-PDNP----PGDWKVYRHNLKPGGWAFSFLN---CGYPD 364 (621)
T ss_pred CCcHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhC-CCCC----CCchhhhCCCCCCCcccCccCC---CCCCC
Confidence 7788999999999976663 11 2235789999999997 2210 12222221110 0112221100 11257
Q ss_pred HHHHHHHHHHHHHhCCC---CCcccHHHHHHHHHhccCCCCCCcccccCC--------------------ccChhHHHHH
Q 020097 91 LASTYCALAILKAVGYN---FANIDSKSILTSMRNLQQHDGSFMPIHFGA--------------------EKDLRFVYCA 147 (331)
Q Consensus 91 l~~Ty~Al~~L~~lg~~---~~~~~~~~~~~~l~~~q~~dG~f~~~~~~~--------------------~~d~~~ty~a 147 (331)
+..|-.++..+.++..+ ......+++++||.++|++||||....... .+.+..|..+
T Consensus 365 vdDta~~~la~~l~~~~~~~~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~ 444 (621)
T TIGR01787 365 VDDTAVVALKAVLLLQEDEHVKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARV 444 (621)
T ss_pred chhHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHH
Confidence 88888887666554422 222223579999999999999997422100 1122345566
Q ss_pred HHHHHHhCCC---CcccHHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHH
Q 020097 148 AAICFLLEDW---SGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLL 224 (331)
Q Consensus 148 l~~l~lL~~~---~~~~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~ 224 (331)
+.+|...+.. ....++++++||+++|++||+|.+.-+ ......|.+|+.+|..+|....+ ...++++
T Consensus 445 l~aL~~~~~r~~~~~~~i~rAl~~L~~~Q~~DGsw~g~wg-~~y~YgT~~al~aL~~~G~~~~~---------~~~i~rA 514 (621)
T TIGR01787 445 IQALGAFGHRADEIRNVLERALEYLRREQRADGSWFGRWG-VNYTYGTGFVLSALAAAGRTYRN---------CPEVQKA 514 (621)
T ss_pred HHHHHHhcCccHhHHHHHHHHHHHHHHhcCCCCCCcccCC-CCCchhHHHHHHHHHHhCCcccC---------CHHHHHH
Confidence 6666655421 123579999999999999999876543 23344588899999988865310 2457899
Q ss_pred HHHHHhcCCCCccccCCCC----------CCCCcchhhHHHHHHHHhCCCCCCCHHHHHHHHHhccCCCCCcCCCC
Q 020097 225 LSWCLQRQAADGGFQGRAN----------KPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCP 290 (331)
Q Consensus 225 ~~wL~~~Q~~dGGf~gr~~----------k~~D~~yt~~~~a~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~~~p 290 (331)
++||+++|++||||..... ..+|+..|.|++.+|...+......++++++||.++|+++|||...+
T Consensus 515 ~~~L~~~Q~~DGGWge~~~s~~~~~y~~~~~S~~s~Ta~AL~AL~~ag~~~~~ai~rgv~~L~~~Q~~dG~w~~~~ 590 (621)
T TIGR01787 515 CDWLLSRQMPDGGWGEDCFSYEDPSYVGSGGSTPSQTGWALMALIAAGEADSEAIERGVKYLLETQRPDGDWPQEY 590 (621)
T ss_pred HHHHHhhcCCCCCCCcCCccccccccCCCCCCCHHHHHHHHHHHHHcCccchHHHHHHHHHHHHhCCCCCCCCCcc
Confidence 9999999999999975421 35688999999999988875443457899999999999999997654
No 37
>PLN03012 Camelliol C synthase
Probab=99.81 E-value=2.5e-18 Score=175.57 Aligned_cols=218 Identities=17% Similarity=0.136 Sum_probs=152.1
Q ss_pred CcHHHHHHHHHHHHHhCCCC-CcccHHHHHHHHHhccCC---C------------CCCccc-ccCCccChhHHHHHHHHH
Q 020097 89 SNLASTYCALAILKAVGYNF-ANIDSKSILTSMRNLQQH---D------------GSFMPI-HFGAEKDLRFVYCAAAIC 151 (331)
Q Consensus 89 ~~l~~Ty~Al~~L~~lg~~~-~~~~~~~~~~~l~~~q~~---d------------G~f~~~-~~~~~~d~~~ty~al~~l 151 (331)
+.++.|-+++++|..-|..- .....+++.+||++.|.. . |+|... ...+-+|..-|--++.++
T Consensus 416 SqvWDTa~~~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sD~TAe~Lka~ 495 (759)
T PLN03012 416 SQLWDSGFALQALLASNLSNEIPDVLRRGHDFIKNSQVGENPSGDFKNMYRHISKGAWTFSDRDHGWQASDCTAEGFKCC 495 (759)
T ss_pred CcHHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHhccCCCCChhhhhCCCCCCCcccccCCCCCCCCCCccHHHHHHH
Confidence 67999999999998876321 111246899999999863 2 444211 112334555555555443
Q ss_pred HHhCCC---------CcccHHHHHHHHHhcCCCCCCcccCCC---------------------CCCChhhHHHHHHHHHH
Q 020097 152 FLLEDW---------SGMDRERAKAYILNCQSYDGGFGLTPG---------------------SESHGGGTYCAVASLRL 201 (331)
Q Consensus 152 ~lL~~~---------~~~~~~~~~~~I~~~Q~~dGGFg~~p~---------------------~esh~~~Ty~AlaaL~l 201 (331)
.++... ......++++||++.||.||||+..-. +.+..-.|..||.+|.+
T Consensus 496 lll~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~ 575 (759)
T PLN03012 496 LLFSMIAPDIVGPKMDPEQLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALIL 575 (759)
T ss_pred HHHHhcccccccccccHHHHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHH
Confidence 333211 123467899999999999999976421 23556679999999999
Q ss_pred cCCccccccccCCCCCCCCHHHHHHHHHhcCCCCccccCCCCCCCCcch---hhHHHHHHHHhCCCCC--CCHHHHHHHH
Q 020097 202 MGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCY---AFWIGSVLRMLGGYNL--IDKEALRGFL 276 (331)
Q Consensus 202 lg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~~y---t~~~~a~L~lL~~~~~--~~~~~~~~~L 276 (331)
+++..+....+.. ...+.++++||++.|++||||.|+.+ +|| |++|+.+|...|.... ..++++++||
T Consensus 576 f~~~~~~~r~~~i---~~~i~rAv~~L~~~Q~~DGsW~G~Wg----v~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fL 648 (759)
T PLN03012 576 FKQLYPDHRTEEI---NAFIKKAAEYIENIQMLDGSWYGNWG----ICFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFL 648 (759)
T ss_pred HhhhCcccchhhh---HHHHHHHHHHHHHhcCCCCCCccccc----ccCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHH
Confidence 8865432211100 23478899999999999999999876 455 4567777777775321 2378999999
Q ss_pred HhccCCCCCcCCCC------------CCCCCHHHHHHHHHHHHhcCCCC
Q 020097 277 LTCQSQYGGFGKCP------------GDLPDLYHSFYGYTAFSLLEEPG 313 (331)
Q Consensus 277 ~~~Q~~~GGf~~~p------------~~~~D~~hT~~al~aLsll~~~~ 313 (331)
++.|++||||+..- +..|.++.|+|||.||...|+..
T Consensus 649 ls~Q~~DGGWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~ 697 (759)
T PLN03012 649 LAAQKDNGGWGESYLSCPKKIYIAQEGEISNLVQTAWALMGLIHAGQAE 697 (759)
T ss_pred HHhcCCCCCcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCC
Confidence 99999999999853 23588999999999999988754
No 38
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.79 E-value=8.3e-18 Score=171.39 Aligned_cols=216 Identities=20% Similarity=0.116 Sum_probs=149.4
Q ss_pred CcHHHHHHHHHHHHHhCC---CCCcccHHHHHHHHHhccCCC---------------CCCcccc-cCCccChhHHHHHHH
Q 020097 89 SNLASTYCALAILKAVGY---NFANIDSKSILTSMRNLQQHD---------------GSFMPIH-FGAEKDLRFVYCAAA 149 (331)
Q Consensus 89 ~~l~~Ty~Al~~L~~lg~---~~~~~~~~~~~~~l~~~q~~d---------------G~f~~~~-~~~~~d~~~ty~al~ 149 (331)
+.++.|-+++++|..-|. +-.....+++++||.+.|..+ |+|.... ..+-+|+.-|-.++.
T Consensus 294 s~vWDTalai~AL~~ag~~~~~~~~~~i~ka~~wL~~~Q~~~~~~g~~~~~~~~~~pGgW~fs~~~~~~PdvdDta~~~l 373 (621)
T TIGR01787 294 SQVWDTAFAIQALRESGDHRLPEFHPALVKAHEWLLLSQIPDNPPGDWKVYRHNLKPGGWAFSFLNCGYPDVDDTAVVAL 373 (621)
T ss_pred CcHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhCCCCCCCchhhhCCCCCCCcccCccCCCCCCCchhHHHHHH
Confidence 579999999999987772 211233578999999999865 4443211 112335555544443
Q ss_pred HHHHhCC----CCcccHHHHHHHHHhcCCCCCCcccCC-C--------------------CCCChhhHHHHHHHHHHcCC
Q 020097 150 ICFLLED----WSGMDRERAKAYILNCQSYDGGFGLTP-G--------------------SESHGGGTYCAVASLRLMGF 204 (331)
Q Consensus 150 ~l~lL~~----~~~~~~~~~~~~I~~~Q~~dGGFg~~p-~--------------------~esh~~~Ty~AlaaL~llg~ 204 (331)
.+.++.. ......+++++||+++||+||||+... . +.+....|..+|.+|...+.
T Consensus 374 a~~l~~~~~~~~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~~ 453 (621)
T TIGR01787 374 KAVLLLQEDEHVKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFGH 453 (621)
T ss_pred HHHHhhcCcccccHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhcC
Confidence 3333321 122346789999999999999998532 1 12344679999999998874
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHhcCCCCccccCCCCCCCCcchhhHHHHHHHHhCCCCC--CCHHHHHHHHHhccCC
Q 020097 205 IEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNL--IDKEALRGFLLTCQSQ 282 (331)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~~yt~~~~a~L~lL~~~~~--~~~~~~~~~L~~~Q~~ 282 (331)
..+.. ...++++++||.+.|++||+|.|+.+. ..+..|.+++.+|..+|.... ...+++++||+++|+.
T Consensus 454 r~~~~--------~~~i~rAl~~L~~~Q~~DGsw~g~wg~-~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~ 524 (621)
T TIGR01787 454 RADEI--------RNVLERALEYLRREQRADGSWFGRWGV-NYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMP 524 (621)
T ss_pred ccHhH--------HHHHHHHHHHHHHhcCCCCCCcccCCC-CCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCC
Confidence 22111 134789999999999999999887542 223335677777887875321 2368999999999999
Q ss_pred CCCcCCCC----------CCCCCHHHHHHHHHHHHhcCCCC
Q 020097 283 YGGFGKCP----------GDLPDLYHSFYGYTAFSLLEEPG 313 (331)
Q Consensus 283 ~GGf~~~p----------~~~~D~~hT~~al~aLsll~~~~ 313 (331)
+|||+... ...||+..|.++|.||...+...
T Consensus 525 DGGWge~~~s~~~~~y~~~~~S~~s~Ta~AL~AL~~ag~~~ 565 (621)
T TIGR01787 525 DGGWGEDCFSYEDPSYVGSGGSTPSQTGWALMALIAAGEAD 565 (621)
T ss_pred CCCCCcCCccccccccCCCCCCCHHHHHHHHHHHHHcCccc
Confidence 99998542 23689999999999998877644
No 39
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.77 E-value=1.3e-18 Score=139.10 Aligned_cols=110 Identities=32% Similarity=0.438 Sum_probs=89.7
Q ss_pred HHHHHHhccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCCCcHHHHHHHHHHHHHhCCCCCcccHHHH--HHHHH
Q 020097 44 SDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSI--LTSMR 121 (331)
Q Consensus 44 ~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~~~~~~~~~~~~~~~l~~Ty~Al~~L~~lg~~~~~~~~~~~--~~~l~ 121 (331)
++||+++|+ +||+|+.+ +. .+++..|+.|+.+|..++... +++++ ++||.
T Consensus 1 v~~L~~~Q~--------~dGgw~~~-~~----------------~~~~~~T~~al~aL~~~g~~~---~~~~~~~~~~L~ 52 (113)
T PF13249_consen 1 VDWLLSRQN--------PDGGWGGF-GG----------------PSDVWDTAFALLALAALGEEP---DRDRAAAVEWLL 52 (113)
T ss_dssp HHHHHHHB---------TTSSBBSS-TS-----------------BEHHHHHHHHHHHHHHTSHH---CHHHHHHHHHHH
T ss_pred CHhhHHHcC--------CCCCCcCC-CC----------------CCCHHHHHHHHHHHHHhCCcc---cHHHHHHHHHHH
Confidence 689999997 68888877 33 369999999999999999754 47788 99999
Q ss_pred hccCCCCCCcccccCCccChhHHHHHHHHHHHhCCCCc-ccHHHHHHHHHhcCCCCCCccc
Q 020097 122 NLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSG-MDRERAKAYILNCQSYDGGFGL 181 (331)
Q Consensus 122 ~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~-~~~~~~~~~I~~~Q~~dGGFg~ 181 (331)
++|++||+|...+.+.+.|+..|++++.++.+++.... ..++++++||+++|++||||+.
T Consensus 53 ~~q~~dGg~~~~~~~~~~~~~~t~~~l~~l~~~~~~~~~~~~~~a~~~l~~~Q~~dGg~~y 113 (113)
T PF13249_consen 53 SQQNPDGGWGSNPDGGPPDVYTTYVALAALELLGRPDDEEAVRKAVDWLLSCQNPDGGWGY 113 (113)
T ss_dssp HHB-TTSGBBSSTTTT-BSHHHHHHHHHHHHHHT-GGCHTTHCCHHHHHHHTB-TTSSB-S
T ss_pred HhCCCCCCccCCCCCCCccHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCCc
Confidence 99999999987655567899999999999999986543 6789999999999999999973
No 40
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.66 E-value=2.4e-14 Score=133.74 Aligned_cols=252 Identities=13% Similarity=0.089 Sum_probs=169.7
Q ss_pred cccCCCcchhhhhhhhhHHHHHhhhHHhhcCCCCCcChHHHHHHHH-------HhccCCCCCCCCCCCCccccCCCCCCC
Q 020097 3 MYESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVL-------SLQAHPSNKADLTNGEFYGFHGSPSSQ 75 (331)
Q Consensus 3 ~l~~lp~~~~~~d~~r~~~~y~~l~~L~lL~~~~~~~~~~~~~~i~-------~~q~~~~~~~~~~dg~~ggf~~~~~~~ 75 (331)
.|..+|.-+..+-.++++-..+.+.-|.-.+..++..+++.++||. ++|+ .||+|+.|.+..
T Consensus 7 ~L~~~P~gc~Eq~~~~~~p~~~~~~yl~~~~~~~~~~~~~~~~~l~~g~~~~~~~q~--------~dGsf~~w~~~~--- 75 (292)
T cd02897 7 NLLRMPYGCGEQNMVNFAPNIYVLDYLKATGQLTPEIESKALGFLRTGYQRQLTYKH--------SDGSYSAFGESD--- 75 (292)
T ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhccC--------CCCCeecccCCC---
Confidence 4677899999999999999999999999887665444567767776 4665 689898775431
Q ss_pred CCCCCCCCccCCCCcHHHHHHHHHHHHHhCCC--CCcccHHHHHHHHHhccCCCCCCccccc-------CC-ccChhHHH
Q 020097 76 LHPDDNGVLMHNGSNLASTYCALAILKAVGYN--FANIDSKSILTSMRNLQQHDGSFMPIHF-------GA-EKDLRFVY 145 (331)
Q Consensus 76 ~~~~~~~~~~~~~~~l~~Ty~Al~~L~~lg~~--~~~~~~~~~~~~l~~~q~~dG~f~~~~~-------~~-~~d~~~ty 145 (331)
+.++.+.|.+++.+|...+.. ++.-..++.++||.+.|++||+|..... ++ ..++..|-
T Consensus 76 -----------~~~~~wlTa~v~~~L~~a~~~~~v~~~~i~ra~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~TA 144 (292)
T cd02897 76 -----------KSGSTWLTAFVLKSFAQARPFIYIDENVLQQALTWLSSHQKSNGCFREVGRVFHKAMQGGVDDEVALTA 144 (292)
T ss_pred -----------CCcchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCCCCCCCCCcccChhhcCCCCCCcchHH
Confidence 136899999999999887632 2222346899999999999999974210 11 22344455
Q ss_pred HHHHHHHHhCCC-CcccHHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHH
Q 020097 146 CAAAICFLLEDW-SGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLL 224 (331)
Q Consensus 146 ~al~~l~lL~~~-~~~~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~ 224 (331)
.++.+|...+.. ....++++++||.+.+.. ..+...|..+..+|.+.+... .+++
T Consensus 145 ~vl~aL~~~g~~~~~~~i~~a~~yL~~~~~~----------~~~~y~~al~a~AL~~~~~~~--------------~~~~ 200 (292)
T cd02897 145 YVLIALLEAGLPSERPVVEKALSCLEAALDS----------ISDPYTLALAAYALTLAGSEK--------------RPEA 200 (292)
T ss_pred HHHHHHHhcCCccccHHHHHHHHHHHHhccc----------CCCHHHHHHHHHHHHHcCCcc--------------HHHH
Confidence 555555555532 233568999999997764 234556677777888887221 3345
Q ss_pred HHHHH---hcCCCCccccCC----------CC-CCCCcchhhHHHHHHHHhCCCCCCCHHHHHHHHHhccCCCCCcCCCC
Q 020097 225 LSWCL---QRQAADGGFQGR----------AN-KPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCP 290 (331)
Q Consensus 225 ~~wL~---~~Q~~dGGf~gr----------~~-k~~D~~yt~~~~a~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~~~p 290 (331)
+++|. .++..+|+|... ++ ..+|+.-|=|++.+|...+........++++||.++|+.+|||+..
T Consensus 201 ~~~l~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ve~TAyaLlall~~~~~~~~~~~~~v~WL~~~q~~~Ggf~sT- 279 (292)
T cd02897 201 LKKLDELAISEDGTKHWSRPPPSEEGPSYYWQAPSAEVEMTAYALLALLSAGGEDLAEALPIVKWLAKQRNSLGGFSST- 279 (292)
T ss_pred HHHHHHHHhccCCCCCCCcCCCcccccccCCCCCcchHHHHHHHHHHHHHcCCccHhHHHHHHHHHHHcCCCCCCcccH-
Confidence 55444 445556666531 11 1246666667776665555312233567888999999999999844
Q ss_pred CCCCCHHHHHHHHHHHH
Q 020097 291 GDLPDLYHSFYGYTAFS 307 (331)
Q Consensus 291 ~~~~D~~hT~~al~aLs 307 (331)
--|..||-||+
T Consensus 280 ------Qdt~~al~AL~ 290 (292)
T cd02897 280 ------QDTVVALQALA 290 (292)
T ss_pred ------HHHHHHHHHHH
Confidence 57888888886
No 41
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.62 E-value=8.9e-14 Score=130.29 Aligned_cols=248 Identities=15% Similarity=0.088 Sum_probs=168.7
Q ss_pred cccCCCcchhhhhhhhhHHHHHhhhHHhhcCCCCCcC---hHHH-------HHHHHHhccCCCCCCCCCCCCccccCCCC
Q 020097 3 MYESLPHHYQYQEINRITLAHFAISGLCLLGALDRVD---KDAV-------SDWVLSLQAHPSNKADLTNGEFYGFHGSP 72 (331)
Q Consensus 3 ~l~~lp~~~~~~d~~r~~~~y~~l~~L~lL~~~~~~~---~~~~-------~~~i~~~q~~~~~~~~~~dg~~ggf~~~~ 72 (331)
.|..+|.-+..+-.+++.-..+.+.=|+-.+...+.. ++++ ++-++++|+ .||+|+.|...+
T Consensus 7 ~L~~~P~GC~EQ~~~~~~p~~~~~~yl~~~~~~~~~~~~~~~~~~~~i~~g~~r~l~~q~--------~dGsf~~w~~~~ 78 (297)
T cd02896 7 KLIRLPTGCGEQTMIKLAPTVYALRYLDTTNQWEKLGPERRDEALKYIRQGYQRQLSYRK--------PDGSYAAWKNRP 78 (297)
T ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHhccC--------CCCCccCCCCCC
Confidence 4667899999999999999999888888766543222 2333 344556664 689998885432
Q ss_pred CCCCCCCCCCCccCCCCcHHHHHHHHHHHHHhCCC--CCcccHHHHHHHHHhccCCCCCCcccc-------cCC----cc
Q 020097 73 SSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYN--FANIDSKSILTSMRNLQQHDGSFMPIH-------FGA----EK 139 (331)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~l~~Ty~Al~~L~~lg~~--~~~~~~~~~~~~l~~~q~~dG~f~~~~-------~~~----~~ 139 (331)
++.+.|.+++.+|...+.. ++.-..++.++||.+.|++||+|.... .++ ++
T Consensus 79 ----------------~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m~gg~~~~~~ 142 (297)
T cd02896 79 ----------------SSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSPVIHREMTGGVEGSEG 142 (297)
T ss_pred ----------------cchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhccCCccccCC
Confidence 5899999999999887642 222223678999999999999997431 111 24
Q ss_pred ChhHHHHHHHHHHHhCCCC-------cccHHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCcccccccc
Q 020097 140 DLRFVYCAAAICFLLEDWS-------GMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSK 212 (331)
Q Consensus 140 d~~~ty~al~~l~lL~~~~-------~~~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~ 212 (331)
++..|-+++.+|.-.+... ...++++++||.+++.. ..+.-.+.-+..+|.+.|..
T Consensus 143 ~~~lTA~vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL~~~~~~----------~~~~Y~~Al~ayALal~~~~------- 205 (297)
T cd02896 143 DVSLTAFVLIALQEARSICPPEVQNLDQSIRKAISYLENQLPN----------LQRPYALAITAYALALADSP------- 205 (297)
T ss_pred CccchHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcCCh-------
Confidence 5555555554444443221 22568999999998864 11233344455566666643
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCCccccCCCC-----------CCCCcchhhHHHHHHHHhCCCCCCCHHHHHHHHHhccC
Q 020097 213 NTSSSIIDLPLLLSWCLQRQAADGGFQGRAN-----------KPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQS 281 (331)
Q Consensus 213 ~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~-----------k~~D~~yt~~~~a~L~lL~~~~~~~~~~~~~~L~~~Q~ 281 (331)
...++.+||.++|..|||+..... ...++--|=|++-++-..+ +.....++++||.+.|+
T Consensus 206 -------~~~~a~~~L~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~vE~TAYALLall~~~--~~~~a~~iv~WL~~qr~ 276 (297)
T cd02896 206 -------LSHAANRKLLSLAKRDGNGWYWWTIDSPYWPVPGPSAITVETTAYALLALLKLG--DIEYANPIARWLTEQRN 276 (297)
T ss_pred -------hhHHHHHHHHHHhhhCCCcceeccCcCccCCCCCCchhhhHHHHHHHHHHHhcC--CchhHHHHHHHHHhcCC
Confidence 356899999999999999874321 1125556666666555455 33457889999999999
Q ss_pred CCCCcCCCCCCCCCHHHHHHHHHHHH
Q 020097 282 QYGGFGKCPGDLPDLYHSFYGYTAFS 307 (331)
Q Consensus 282 ~~GGf~~~p~~~~D~~hT~~al~aLs 307 (331)
..|||+. .--|..||-||+
T Consensus 277 ~~Ggf~s-------TQdTvval~AL~ 295 (297)
T cd02896 277 YGGGFGS-------TQDTVVALQALA 295 (297)
T ss_pred CCCCeeh-------HHHHHHHHHHHh
Confidence 9999984 467888988886
No 42
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=99.56 E-value=6.9e-14 Score=120.96 Aligned_cols=155 Identities=18% Similarity=0.106 Sum_probs=123.6
Q ss_pred hhhhhhhhHHHHHhhhHHhhcCCCCCcChHHHHHHHHHhccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCCCcH
Q 020097 12 QYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNL 91 (331)
Q Consensus 12 ~~~d~~r~~~~y~~l~~L~lL~~~~~~~~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~~~~~~~~~~~~~~~l 91 (331)
+=.-++.+..+||..+.|.+.|.. -.|++.+||.+.|+ ++|+++||+. +.|+.
T Consensus 116 ~f~t~~~Le~ty~~~~~l~~~n~~---~~eE~k~~v~~~~r--------e~~~g~~YGv----------------~~pnt 168 (274)
T COG1689 116 EFGTATPLEATYWMMSALNMVNYE---YLEEMKEKVIEFVR--------EFGIGDAYGV----------------THPNT 168 (274)
T ss_pred ecCCCchHHHHHHHHHHHHHhCcC---chHHHHHHHHHHhh--------hhcccccccc----------------CCcch
Confidence 334567799999999999999953 46788888888886 3444445543 34799
Q ss_pred HHHHHHHHHHHHhCCCCCcccHHHHHHHHHhccCCCCCCcccccCCccChhHHHHHHHHHHHhCCCCcccHHHHHHHHHh
Q 020097 92 ASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILN 171 (331)
Q Consensus 92 ~~Ty~Al~~L~~lg~~~~~~~~~~~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~~~~I~~ 171 (331)
.+||.|+..|...+. .+.+..|=.+ .-.+|+|...|.+..+.+..||.|+.++.+|+.. -.+.+.++||++
T Consensus 169 ~~t~~aly~l~~k~~------~~~v~~Fe~~-c~~~Ggf~~~P~syPPYiE~t~ya~r~lelL~~k--~~i~~~~rFI~s 239 (274)
T COG1689 169 TMTYQALYTLGSKGP------KEEVRHFELC-CGDWGGFTEVPNSYPPYIEPTFYALRGLELLGGK--YCISDHIRFIRS 239 (274)
T ss_pred HHHHHHHHhhccccc------hHHHHhHHhc-cccCCCcccCCCCCCCccchHHHHHhHHHHHccC--cCchHHHHHHHH
Confidence 999999988877762 3456666555 3457999888877788999999999999999853 457889999999
Q ss_pred cCCCCCCcccCC-CCCCChhhHHHHHHHHHHc
Q 020097 172 CQSYDGGFGLTP-GSESHGGGTYCAVASLRLM 202 (331)
Q Consensus 172 ~Q~~dGGFg~~p-~~esh~~~Ty~AlaaL~ll 202 (331)
.||+||||..+- .+.|....||.||++|..+
T Consensus 240 lqN~nGGFRRS~~~GISt~e~tYrAl~~L~~l 271 (274)
T COG1689 240 LQNQNGGFRRSYELGISTFENTYRALASLASL 271 (274)
T ss_pred hhcCCCCeeeeEeccccchHHHHHHHHHHHHH
Confidence 999999999885 6788899999999999876
No 43
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=99.39 E-value=5.6e-13 Score=88.71 Aligned_cols=44 Identities=50% Similarity=0.906 Sum_probs=42.2
Q ss_pred ccHHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcC
Q 020097 160 MDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMG 203 (331)
Q Consensus 160 ~~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg 203 (331)
++++++++||++||++||||+..|+.++|+.+||||+++|+++|
T Consensus 1 id~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 1 IDVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp SHHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 47899999999999999999999999999999999999999986
No 44
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=99.35 E-value=1.1e-12 Score=87.23 Aligned_cols=44 Identities=45% Similarity=0.731 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHhccCCCCCcCCCCCCCCCHHHHHHHHHHHHhcC
Q 020097 267 IDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLE 310 (331)
Q Consensus 267 ~~~~~~~~~L~~~Q~~~GGf~~~p~~~~D~~hT~~al~aLsll~ 310 (331)
+|++++++||++||+++|||+..|+.+||++|||+++++|+++|
T Consensus 1 id~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 1 IDVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp SHHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 57899999999999999999999999999999999999999986
No 45
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=99.33 E-value=9.3e-12 Score=123.64 Aligned_cols=181 Identities=23% Similarity=0.266 Sum_probs=138.0
Q ss_pred cChHH---HHHHHHHhccCCCCCCCCCCCCccccCCCCCCCC-----CCCCCCCccCCCCcHHHHHHHHHHHHHhCCCCC
Q 020097 38 VDKDA---VSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQL-----HPDDNGVLMHNGSNLASTYCALAILKAVGYNFA 109 (331)
Q Consensus 38 ~~~~~---~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~-----~~~~~~~~~~~~~~l~~Ty~Al~~L~~lg~~~~ 109 (331)
++.|+ .++.++.+|+ +|||+..+.......+ |.+....++.+.+.+.+|-.+|++|......+.
T Consensus 509 ~~~erL~dav~~Ll~lq~--------~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~~yvEcT~s~I~aL~~F~k~~p 580 (760)
T KOG0497|consen 509 IDVERLYDAVDVLLYLQS--------ENGGFAAYEPARGYEWLELLNPAEVFGDIMVEYEYVECTSSAIQALVYFHKLFP 580 (760)
T ss_pred CCHHHHHHHHHHHHhhhh--------ccCccccccccchHHHHHhcCchhcccceeeeecccccHHHHHHHHHhhcccCc
Confidence 56775 5667788885 6787777766554432 344445567778999999999999999876553
Q ss_pred c-----cc--HHHHHHHHHhccCCCCCCcccccCCccChhHHH---HHHHHHHHhCCC--CcccHHHHHHHHHhcCCCCC
Q 020097 110 N-----ID--SKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVY---CAAAICFLLEDW--SGMDRERAKAYILNCQSYDG 177 (331)
Q Consensus 110 ~-----~~--~~~~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty---~al~~l~lL~~~--~~~~~~~~~~~I~~~Q~~dG 177 (331)
. +. .+++++||.+.|.+||+|.. .+ .+.+|| +++.++...+.. +-..++++++|+++-|++||
T Consensus 581 ~~r~~Ei~~~i~~av~~ie~~Q~~DGSWyG-sW----gvCFtY~t~Fa~~gl~aaGkty~nc~~irka~~Fll~~Q~~~G 655 (760)
T KOG0497|consen 581 GHRKKEIEKSIEKAVEFIEKLQLPDGSWYG-SW----GVCFTYGTWFALRGLAAAGKTYENCEAIRKACDFLLSKQNPDG 655 (760)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCCCCcccc-hh----hHHHHHHHHHhcchhhhcchhhhccHHHHHHHHHHHhhhcccC
Confidence 2 21 25789999999999999974 45 356666 466666666632 34568999999999999999
Q ss_pred CcccCC------------CCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCccccC
Q 020097 178 GFGLTP------------GSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQG 240 (331)
Q Consensus 178 GFg~~p------------~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~g 240 (331)
|||..+ +..+++..|.+|+.+|.+.|+.+.+ ....+++++.|...|.++|-|..
T Consensus 656 GWgEs~lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~~rd---------~~P~hr~ak~linsQ~~nGdfpq 721 (760)
T KOG0497|consen 656 GWGESYLSCPEKRYIPLEGNKSNVVQTAWALMALIMAGQAERD---------PLPLHRAAKVLINSQLENGDFPQ 721 (760)
T ss_pred CCccccccCccccccccccccccchhHHHHHHHHHhcCCcccc---------cchHHHHHHHHHhcccccCCcch
Confidence 999972 3468999999999999999987632 34688999999999999998873
No 46
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.28 E-value=2.1e-10 Score=107.11 Aligned_cols=198 Identities=15% Similarity=0.079 Sum_probs=127.3
Q ss_pred cHHHHHHHHHHHHHhCCCCCcccHHHHHHHHH-------hccCCCCCCcccccC-CccChhHHHHHHHHHHHhCCC---C
Q 020097 90 NLASTYCALAILKAVGYNFANIDSKSILTSMR-------NLQQHDGSFMPIHFG-AEKDLRFVYCAAAICFLLEDW---S 158 (331)
Q Consensus 90 ~l~~Ty~Al~~L~~lg~~~~~~~~~~~~~~l~-------~~q~~dG~f~~~~~~-~~~d~~~ty~al~~l~lL~~~---~ 158 (331)
.+..+..++.-|...+. ++.-.++++.+||. +.|++||+|..+... ..+++..|..++.++...... +
T Consensus 22 ~~~p~~~~~~yl~~~~~-~~~~~~~~~~~~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~v~ 100 (292)
T cd02897 22 NFAPNIYVLDYLKATGQ-LTPEIESKALGFLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARPFIYID 100 (292)
T ss_pred HHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhccCCCCCeecccCCCCCcchhhHHHHHHHHHHHhccCCCC
Confidence 34444455555555442 22222456666666 579999999754211 256777887777777666532 2
Q ss_pred cccHHHHHHHHHhcCCCCCCcccCC---------CCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHH
Q 020097 159 GMDRERAKAYILNCQSYDGGFGLTP---------GSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCL 229 (331)
Q Consensus 159 ~~~~~~~~~~I~~~Q~~dGGFg~~p---------~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~ 229 (331)
...++++++||++.|++||||+... +.+++...|..++.+|...|..+. ...++++++||.
T Consensus 101 ~~~i~ra~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~~----------~~~i~~a~~yL~ 170 (292)
T cd02897 101 ENVLQQALTWLSSHQKSNGCFREVGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPSE----------RPVVEKALSCLE 170 (292)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCcccChhhcCCCCCCcchHHHHHHHHHhcCCccc----------cHHHHHHHHHHH
Confidence 3457899999999999999998631 123456689999999998886431 345789999999
Q ss_pred hcCCCCccccCCCCCCCCcchhhHHHHHHHHhCCCCCCCHHHHHHHHH---hccCCCCCcCCC----------C-CCCCC
Q 020097 230 QRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLL---TCQSQYGGFGKC----------P-GDLPD 295 (331)
Q Consensus 230 ~~Q~~dGGf~gr~~k~~D~~yt~~~~a~L~lL~~~~~~~~~~~~~~L~---~~Q~~~GGf~~~----------p-~~~~D 295 (331)
+.+.+ ..++.-+..+..+|.+.+. + ..+++.+.|. ..++..|+|... + +..+|
T Consensus 171 ~~~~~----------~~~~y~~al~a~AL~~~~~-~--~~~~~~~~l~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ 237 (292)
T cd02897 171 AALDS----------ISDPYTLALAAYALTLAGS-E--KRPEALKKLDELAISEDGTKHWSRPPPSEEGPSYYWQAPSAE 237 (292)
T ss_pred Hhccc----------CCCHHHHHHHHHHHHHcCC-c--cHHHHHHHHHHHHhccCCCCCCCcCCCcccccccCCCCCcch
Confidence 97753 1233333445666777762 1 2455555553 344456666532 1 23469
Q ss_pred HHHHHHHHHHHHhcCC
Q 020097 296 LYHSFYGYTAFSLLEE 311 (331)
Q Consensus 296 ~~hT~~al~aLsll~~ 311 (331)
+.-|.|+|.+|...+.
T Consensus 238 ve~TAyaLlall~~~~ 253 (292)
T cd02897 238 VEMTAYALLALLSAGG 253 (292)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999987763
No 47
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.26 E-value=2e-10 Score=107.71 Aligned_cols=179 Identities=13% Similarity=0.038 Sum_probs=122.9
Q ss_pred HHHHHHHHhccCCCCCCcccccCCccChhHHHHHHHHHHHhCCC---CcccHHHHHHHHHhcCCCCCCcccCC-------
Q 020097 114 KSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDW---SGMDRERAKAYILNCQSYDGGFGLTP------- 183 (331)
Q Consensus 114 ~~~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~---~~~~~~~~~~~I~~~Q~~dGGFg~~p------- 183 (331)
++.++.+.+.|++||+|..+. +...+++.|-+++.++...... +...++++++||++.|++||+|...-
T Consensus 55 ~~g~~r~l~~q~~dGsf~~w~-~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m 133 (297)
T cd02896 55 RQGYQRQLSYRKPDGSYAAWK-NRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSPVIHREM 133 (297)
T ss_pred HHHHHHHHhccCCCCCccCCC-CCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhc
Confidence 345666778899999997653 2466778777777777766532 33346889999999999999999752
Q ss_pred -----CCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCccccCCCCCCCCcchhhHHHHHH
Q 020097 184 -----GSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVL 258 (331)
Q Consensus 184 -----~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~~yt~~~~a~L 258 (331)
+.+++...|..++.+|...+...+.... .....++++++||.++|.. ..++.-..-+..+|
T Consensus 134 ~gg~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~----~~~~~i~rA~~yL~~~~~~----------~~~~Y~~Al~ayAL 199 (297)
T cd02896 134 TGGVEGSEGDVSLTAFVLIALQEARSICPPEVQ----NLDQSIRKAISYLENQLPN----------LQRPYALAITAYAL 199 (297)
T ss_pred cCCccccCCCccchHHHHHHHHhhhccccccch----hhHHHHHHHHHHHHHhccc----------CCChHHHHHHHHHH
Confidence 1135677899999999887754210000 0023578999999998753 12332222344556
Q ss_pred HHhCCCCCCCHHHHHHHHHhccCCCCCcCCC-----------CCCCCCHHHHHHHHHHHHhcC
Q 020097 259 RMLGGYNLIDKEALRGFLLTCQSQYGGFGKC-----------PGDLPDLYHSFYGYTAFSLLE 310 (331)
Q Consensus 259 ~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~~~-----------p~~~~D~~hT~~al~aLsll~ 310 (331)
.+.|.. ...++.++|.+.|+.+||+... +....++..|.|||.++-..+
T Consensus 200 al~~~~---~~~~a~~~L~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~vE~TAYALLall~~~ 259 (297)
T cd02896 200 ALADSP---LSHAANRKLLSLAKRDGNGWYWWTIDSPYWPVPGPSAITVETTAYALLALLKLG 259 (297)
T ss_pred HHcCCh---hhHHHHHHHHHHhhhCCCcceeccCcCccCCCCCCchhhhHHHHHHHHHHHhcC
Confidence 666632 4688999999999999998742 112338999999999987665
No 48
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=99.26 E-value=6.1e-11 Score=117.94 Aligned_cols=222 Identities=23% Similarity=0.258 Sum_probs=153.2
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCCCccc-HHHHHHHHHhccCC---CCCCccc--c--cCC----ccCh-----hHHHHHH
Q 020097 86 HNGSNLASTYCALAILKAVGYNFANID-SKSILTSMRNLQQH---DGSFMPI--H--FGA----EKDL-----RFVYCAA 148 (331)
Q Consensus 86 ~~~~~l~~Ty~Al~~L~~lg~~~~~~~-~~~~~~~l~~~q~~---dG~f~~~--~--~~~----~~d~-----~~ty~al 148 (331)
.+ +.++.|-+||+++..-+...+-.+ ..+..+||++.|.. .|.+..+ + .|+ +.|- ..|-=++
T Consensus 413 ~~-sQ~Wdt~falqalla~~~~~E~~~~l~k~~~yl~~sQv~~n~~gd~~~~yR~~~kG~wtfS~~d~gw~vsDctaEal 491 (760)
T KOG0497|consen 413 FN-SQLWDTAFALQALLAAGLVDEFRSTLVKAYDFLKKSQVRENPPGDFKKMYRHISKGGWTFSDRDQGWPVSDCTAEAL 491 (760)
T ss_pred cc-hhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcccccCCCcchhhheeccccccccccccccceeeccccHHHH
Confidence 45 899999999999998775421111 26789999999853 3433211 0 111 1110 1122255
Q ss_pred HHHHHhCCC------CcccHHH---HHHHHHhcCCCCCCcccC-------------CC--------CCCChhhHHHHHHH
Q 020097 149 AICFLLEDW------SGMDRER---AKAYILNCQSYDGGFGLT-------------PG--------SESHGGGTYCAVAS 198 (331)
Q Consensus 149 ~~l~lL~~~------~~~~~~~---~~~~I~~~Q~~dGGFg~~-------------p~--------~esh~~~Ty~Alaa 198 (331)
+++.+++.. ..+++++ +++.|+..|..+|||..- |. .+..+..|-.+|.+
T Consensus 492 ~~~lll~~~~~~~vg~~~~~erL~dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~~yvEcT~s~I~a 571 (760)
T KOG0497|consen 492 KCCLLLSSMPSEIVGEKIDVERLYDAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAEVFGDIMVEYEYVECTSSAIQA 571 (760)
T ss_pred HHHHHhcCCChhhccCCCCHHHHHHHHHHHHhhhhccCccccccccchHHHHHhcCchhcccceeeeecccccHHHHHHH
Confidence 666666532 2455555 678899999999999764 11 13456678899999
Q ss_pred HHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCccccCCCCCCCCcchhh---HHHHHHHHhCCC--CCCCHHHHH
Q 020097 199 LRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAF---WIGSVLRMLGGY--NLIDKEALR 273 (331)
Q Consensus 199 L~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~~yt~---~~~a~L~lL~~~--~~~~~~~~~ 273 (331)
|....+..+++..++. ..-+.++++||.+.|.+||.|-|..+ +|++| .++.+|...|+. .-..+++++
T Consensus 572 L~~F~k~~p~~r~~Ei---~~~i~~av~~ie~~Q~~DGSWyGsWg----vCFtY~t~Fa~~gl~aaGkty~nc~~irka~ 644 (760)
T KOG0497|consen 572 LVYFHKLFPGHRKKEI---EKSIEKAVEFIEKLQLPDGSWYGSWG----VCFTYGTWFALRGLAAAGKTYENCEAIRKAC 644 (760)
T ss_pred HHhhcccCccHHHHHH---HHHHHHHHHHHHHcCCCCCcccchhh----HHHHHHHHHhcchhhhcchhhhccHHHHHHH
Confidence 9998776544432221 12367899999999999999998765 67765 466666666642 122368999
Q ss_pred HHHHhccCCCCCcCCCCC------------CCCCHHHHHHHHHHHHhcCCCCCC
Q 020097 274 GFLLTCQSQYGGFGKCPG------------DLPDLYHSFYGYTAFSLLEEPGLN 315 (331)
Q Consensus 274 ~~L~~~Q~~~GGf~~~p~------------~~~D~~hT~~al~aLsll~~~~~~ 315 (331)
+||++.|+.+|||+.++. ..+.+..|.+|+.+|-+.++..-.
T Consensus 645 ~Fll~~Q~~~GGWgEs~lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~~rd 698 (760)
T KOG0497|consen 645 DFLLSKQNPDGGWGESYLSCPEKRYIPLEGNKSNVVQTAWALMALIMAGQAERD 698 (760)
T ss_pred HHHHhhhcccCCCccccccCccccccccccccccchhHHHHHHHHHhcCCcccc
Confidence 999999999999999753 357889999999999999987665
No 49
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=99.19 E-value=6.8e-09 Score=96.01 Aligned_cols=250 Identities=16% Similarity=0.086 Sum_probs=156.3
Q ss_pred cccCCCcchhhhhhhhhHHHHHhhhHHhhcCCCCCc-------ChHHHHHHHHHhccCCCCCCCCCCCCccccCCCCCCC
Q 020097 3 MYESLPHHYQYQEINRITLAHFAISGLCLLGALDRV-------DKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQ 75 (331)
Q Consensus 3 ~l~~lp~~~~~~d~~r~~~~y~~l~~L~lL~~~~~~-------~~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~ 75 (331)
-|...|..+..+=.+++....+...-+...+...+. ..++.+++|.++|+ .|||||-|.+..
T Consensus 7 ~L~~yPygC~EQ~~s~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~Q~--------~dGgf~~w~~~~--- 75 (282)
T cd02891 7 YLLRYPYGCGEQTMSRAAPNLYVLKYLDATGQLTPEIREKALEYIRKGYQRLLTYQR--------SDGSFSAWGNSD--- 75 (282)
T ss_pred HHHcCCCCcHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHhhcC--------CCCCccccCCCC---
Confidence 466788888889889988888877777766654321 13457889999997 689998887652
Q ss_pred CCCCCCCCccCCCCcHHHHHHHHHHHHHhCCC--CCcccHHHHHHHHHhccCCCCCCcccccC--------CccChhHHH
Q 020097 76 LHPDDNGVLMHNGSNLASTYCALAILKAVGYN--FANIDSKSILTSMRNLQQHDGSFMPIHFG--------AEKDLRFVY 145 (331)
Q Consensus 76 ~~~~~~~~~~~~~~~l~~Ty~Al~~L~~lg~~--~~~~~~~~~~~~l~~~q~~dG~f~~~~~~--------~~~d~~~ty 145 (331)
.++.+.|.+++..|...+.. ++..-.++.++||.+.|.+||+|...... ...++..|-
T Consensus 76 ------------~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~tA 143 (282)
T cd02891 76 ------------SGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRELGPVIHREMKGGVDDSVSLTA 143 (282)
T ss_pred ------------CCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCCCCccCHhhcCCcCCCcchHH
Confidence 26899999999999876532 22212478899999999999999653210 123444566
Q ss_pred HHHHHHHHhCCCCcccHHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHH
Q 020097 146 CAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLL 225 (331)
Q Consensus 146 ~al~~l~lL~~~~~~~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~ 225 (331)
+++.+|...+.......+++++||.+.... ....-.......+|.++|... ..++++
T Consensus 144 ~al~~L~~~g~~~~~~~~~a~~~L~~~~~~----------~~~~~~~a~la~al~~~g~~~-------------~~~~~l 200 (282)
T cd02891 144 YVLIALAEAGKACDASIEKALAYLETQLDG----------LLDPYALAILAYALALAGDST-------------RADEAL 200 (282)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcCccH-------------HHHHHH
Confidence 666666666643345678999999987754 112333444556666676532 244556
Q ss_pred HHHHhcCCCCccc-------cCCCCCCCCcchhhHHHHHHHHhCCCCCCCHHHHHHHHHhccCCCCCcCCCCCCCCCHHH
Q 020097 226 SWCLQRQAADGGF-------QGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPGDLPDLYH 298 (331)
Q Consensus 226 ~wL~~~Q~~dGGf-------~gr~~k~~D~~yt~~~~a~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~~~p~~~~D~~h 298 (331)
+-+.+.-...++. .+..+...++-.+.+ +.+..+........++++.||.+.+...|+|. ....
T Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~a~--all~~~~~~~~~~~~~~~~~L~~~~~~~~~~~-------sTq~ 271 (282)
T cd02891 201 KKLLEAAREKGGTAHWSLSWPGDYGSSLRVEATAY--ALLALLKLGDLEEAGPIAKWLAQQRNSGGGFL-------STQD 271 (282)
T ss_pred HHHHHHhhhcCCcccccCCCCCCCCchhhHHHHHH--HHHHHHhcCChhhHHHHHHHHHHcCCCCCCcc-------cHHH
Confidence 6665543222221 111122222222222 22333322122346789999988667778877 4467
Q ss_pred HHHHHHHHH
Q 020097 299 SFYGYTAFS 307 (331)
Q Consensus 299 T~~al~aLs 307 (331)
|.++|-||+
T Consensus 272 t~~al~AL~ 280 (282)
T cd02891 272 TVVALQALA 280 (282)
T ss_pred HHHHHHHHH
Confidence 888888875
No 50
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.17 E-value=1.4e-11 Score=97.89 Aligned_cols=105 Identities=25% Similarity=0.255 Sum_probs=40.9
Q ss_pred HHHHHHHHhccCCCCCCcccccCCccChhHHHHHHHHHHHhCCC-CcccHHHHHHHHHhcCCCCCCcccCCCCCCChhhH
Q 020097 114 KSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDW-SGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGT 192 (331)
Q Consensus 114 ~~~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~-~~~~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~T 192 (331)
+++++||.+.|++||+|.. .+ +.++..|++++.++..++.. ....++++++||+++|++||||+..+. .+...|
T Consensus 2 ~~~~~~l~~~Q~~dG~W~~-~~--~~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~~~--~~~~~t 76 (109)
T PF13243_consen 2 KRAAEWLLSQQNPDGSWGY-NW--GSDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQNPDGGWGYSGG--EYVSMT 76 (109)
T ss_dssp ------------------------------------------TS-SSBSSHHHHHHHHH---TTS--S-TS----HHHHH
T ss_pred ccccccccccccccccccc-cc--cccccccccccccccccCCCCcHHHHHHHHHHHHHhcCCCCCCCCcCC--CCHHHH
Confidence 4689999999999999974 33 35677888888888777643 345579999999999999999998733 345567
Q ss_pred HHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCC
Q 020097 193 YCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQA 233 (331)
Q Consensus 193 y~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~ 233 (331)
..++.+|.+.+.... ...++++++||.+.|.
T Consensus 77 ~~~~~~l~~~~~~~~----------~~~~~r~~~wi~~~~~ 107 (109)
T PF13243_consen 77 AAAIAALALAGVYPD----------DEAVERGLEWILSHQL 107 (109)
T ss_dssp HHHHHHHHHHHTT------------HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhCCCCC----------CHHHHHHHHHHHHccC
Confidence 778888877654321 2358899999999875
No 51
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.06 E-value=1.2e-10 Score=92.57 Aligned_cols=106 Identities=22% Similarity=0.194 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCccccCC
Q 020097 162 RERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGR 241 (331)
Q Consensus 162 ~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr 241 (331)
++++++||++.|++||||+... +++...|++++.+|...+... ....++++++||.++|++||||...
T Consensus 1 i~~~~~~l~~~Q~~dG~W~~~~--~~~~~~t~~~~~al~~~~~~~----------~~~ai~ka~~~l~~~Q~~dG~w~~~ 68 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWGYNW--GSDVFVTAALILALAAAGDAA----------VDEAIKKAIDWLLSHQNPDGGWGYS 68 (109)
T ss_dssp ------------------------------------------TS-----------SSBSSHHHHHHHHH---TTS--S-T
T ss_pred Cccccccccccccccccccccc--cccccccccccccccccCCCC----------cHHHHHHHHHHHHHhcCCCCCCCCc
Confidence 3688999999999999998653 367888999999999887432 1345789999999999999999977
Q ss_pred CCCCCCcchhhHHHHHHHHhCCCC-CCCHHHHHHHHHhccC
Q 020097 242 ANKPSDTCYAFWIGSVLRMLGGYN-LIDKEALRGFLLTCQS 281 (331)
Q Consensus 242 ~~k~~D~~yt~~~~a~L~lL~~~~-~~~~~~~~~~L~~~Q~ 281 (331)
+. .....+-.++..|.+.+... ....+++++||.+.|.
T Consensus 69 ~~--~~~~~t~~~~~~l~~~~~~~~~~~~~r~~~wi~~~~~ 107 (109)
T PF13243_consen 69 GG--EYVSMTAAAIAALALAGVYPDDEAVERGLEWILSHQL 107 (109)
T ss_dssp S----HHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH--
T ss_pred CC--CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Confidence 32 22223334455555554322 1226899999987764
No 52
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=98.89 E-value=2.4e-08 Score=91.07 Aligned_cols=196 Identities=20% Similarity=0.197 Sum_probs=117.0
Q ss_pred CCCCccccCCCCCCCCCCCCCCCccCCCCcHHHHHHHHHHHHHhCCCCCcccH---HHHHHHHHhccCCCCCCccccc--
Q 020097 61 TNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDS---KSILTSMRNLQQHDGSFMPIHF-- 135 (331)
Q Consensus 61 ~dg~~ggf~~~~~~~~~~~~~~~~~~~~~~l~~Ty~Al~~L~~lg~~~~~~~~---~~~~~~l~~~q~~dG~f~~~~~-- 135 (331)
.||+|+.| .... +++++.|-+++.+|.....- -.||. .++++||.+.|++||+|.....
T Consensus 12 ~DGsfs~f-~~~~--------------~~s~WLTAfv~k~f~~a~~~-i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~ 75 (246)
T PF07678_consen 12 SDGSFSAF-SSDS--------------PSSTWLTAFVVKVFSQAKKY-IFVDENVICRAVKWLISQQQPDGSFEEDGPVI 75 (246)
T ss_dssp TTSSBBSS-TTTS--------------SBBHHHHHHHHHHHHHHTTT-S-CEHHHHHHHHHHHHHHBETTSEB--SSS-S
T ss_pred CCCCeecc-ccCC--------------cccHHHHHHHHHHHHHHHHh-hcCCHHHHHHHHHHHHHhhcCCCccccCCCcc
Confidence 68999999 3221 47999999999999987743 23443 6789999999999999964211
Q ss_pred ----CCccChhHHHHHHHHHHHhCCC---------CcccHHHHHHHHHhcCCCCCCcccCCCCCCChhhHHH-HHHH--H
Q 020097 136 ----GAEKDLRFVYCAAAICFLLEDW---------SGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYC-AVAS--L 199 (331)
Q Consensus 136 ----~~~~d~~~ty~al~~l~lL~~~---------~~~~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~-Alaa--L 199 (331)
.+..+-..+..|.....++... ....++++++||.+.... ...+|. ||.+ |
T Consensus 76 ~~~~~g~~~~~~~lTA~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~~~~-------------~~~~Y~lAl~aYAL 142 (246)
T PF07678_consen 76 HREMQGGVEDDIALTAYVLIALLEAGSLCDSEKPEYENAINKALNYLERHLDN-------------IQDPYTLALVAYAL 142 (246)
T ss_dssp SGGGSGGGTHHHHHHHHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHHHGC-------------TSSHHHHHHHHHHH
T ss_pred ccccCCCCCCCeeehHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhccc-------------cCCHHHHHHHHHHH
Confidence 0111223334444444444321 123468899999775111 112222 4443 4
Q ss_pred HHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCccccCCCCCC--------------CCcchhhHHHHHHHHhCCCC
Q 020097 200 RLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKP--------------SDTCYAFWIGSVLRMLGGYN 265 (331)
Q Consensus 200 ~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~--------------~D~~yt~~~~a~L~lL~~~~ 265 (331)
.+.+.. ...+.+.+-|.++...+|+...-+... .++.-|=++ .|+++....
T Consensus 143 ~la~~~-------------~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~vEtTaYa--LLa~l~~~~ 207 (246)
T PF07678_consen 143 ALAGDS-------------PQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDVETTAYA--LLALLKRGD 207 (246)
T ss_dssp HHTTTC-------------HHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHHHHHHHH--HHHHHHHTC
T ss_pred Hhhccc-------------chHHHHHHHHHHhhhhccccCcccCCcccccccccccccchHHHHHHHHH--HHHHHhccc
Confidence 445522 346678888888777666653211111 112222223 233443333
Q ss_pred CCCHHHHHHHHHhccCCCCCcCCCCCCCCCHHHHHHHHHHHH
Q 020097 266 LIDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFS 307 (331)
Q Consensus 266 ~~~~~~~~~~L~~~Q~~~GGf~~~p~~~~D~~hT~~al~aLs 307 (331)
......+++||.+.|+..|||+ ..--|..||-||+
T Consensus 208 ~~~~~~iv~WL~~qr~~~Ggf~-------STQdTvvaL~AL~ 242 (246)
T PF07678_consen 208 LEEASPIVRWLISQRNSGGGFG-------STQDTVVALQALA 242 (246)
T ss_dssp HHHHHHHHHHHHHCTTTTSSTS-------SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCccC-------cHHHHHHHHHHHH
Confidence 3456789999999999999999 3467888888876
No 53
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=98.85 E-value=1.2e-07 Score=87.60 Aligned_cols=171 Identities=15% Similarity=0.088 Sum_probs=108.7
Q ss_pred HHHHHHHHhccCCCCCCcccccCCccChhHHHHHHHHHHHhCCC---CcccHHHHHHHHHhcCCCCCCcccCCC------
Q 020097 114 KSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDW---SGMDRERAKAYILNCQSYDGGFGLTPG------ 184 (331)
Q Consensus 114 ~~~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~---~~~~~~~~~~~I~~~Q~~dGGFg~~p~------ 184 (331)
++.+++|.++|++||||..++....+++..|.+++.+|...+.. +...++++++||.+.|++||+|.....
T Consensus 52 ~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~~~ 131 (282)
T cd02891 52 RKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRELGPVIHREM 131 (282)
T ss_pred HHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCCCCccCHhh
Confidence 56789999999999999865432367888888888777766432 233478999999999999999987532
Q ss_pred ---CCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCccccCCCCCCCCcchhhHHHHHHHHh
Q 020097 185 ---SESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRML 261 (331)
Q Consensus 185 ---~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~~yt~~~~a~L~lL 261 (331)
..+....|.+++.+|...|... ...+.++++||.++... ..+..-......+|.+.
T Consensus 132 ~~~~~~~~~~tA~al~~L~~~g~~~-----------~~~~~~a~~~L~~~~~~----------~~~~~~~a~la~al~~~ 190 (282)
T cd02891 132 KGGVDDSVSLTAYVLIALAEAGKAC-----------DASIEKALAYLETQLDG----------LLDPYALAILAYALALA 190 (282)
T ss_pred cCCcCCCcchHHHHHHHHHHhcccc-----------hHHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHc
Confidence 2344567889999998887642 23467899999987642 12232233445566666
Q ss_pred CCCCCCCHHHHHHHHHhccCCCCC-------cCCCCCCCCCHHHHHHHHHHHH
Q 020097 262 GGYNLIDKEALRGFLLTCQSQYGG-------FGKCPGDLPDLYHSFYGYTAFS 307 (331)
Q Consensus 262 ~~~~~~~~~~~~~~L~~~Q~~~GG-------f~~~p~~~~D~~hT~~al~aLs 307 (331)
|... ..+++.+-|...-...++ +....+...+...|.+++.+..
T Consensus 191 g~~~--~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~a~all~~~ 241 (282)
T cd02891 191 GDST--RADEALKKLLEAAREKGGTAHWSLSWPGDYGSSLRVEATAYALLALL 241 (282)
T ss_pred CccH--HHHHHHHHHHHHhhhcCCcccccCCCCCCCCchhhHHHHHHHHHHHH
Confidence 6421 234444444333322222 1222333345566667666654
No 54
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=98.61 E-value=3.6e-08 Score=97.08 Aligned_cols=184 Identities=17% Similarity=0.116 Sum_probs=125.0
Q ss_pred CcChHHHHHHHHHhccCCCCCCCCCCCCccccCCCCCCCC----CCCCCCCccCCCCcHHHHHHHHHHHHHhCCCCC---
Q 020097 37 RVDKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQL----HPDDNGVLMHNGSNLASTYCALAILKAVGYNFA--- 109 (331)
Q Consensus 37 ~~~~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~----~~~~~~~~~~~~~~l~~Ty~Al~~L~~lg~~~~--- 109 (331)
..+-++.++||..+|+ +.|+|..|+-.....+ |..+.. ++.+++.+.+|...+..|..++.-++
T Consensus 280 ~~~~~~~l~~V~~~q~--------~~g~~a~~e~~~~~a~~~~L~~~~~~-~~~~~s~adct~~~~~~l~a~~~yl~~~~ 350 (517)
T COG1657 280 LPNFELGLDWVLYMQN--------KLGGLAVYEDRNLHAWLRLLPPAEVK-AMVDPSTADCTHRVVLALAALNAYLEAYD 350 (517)
T ss_pred hhhHHhhhhHhhhccc--------ccCceeeeccccccHHHhhCCHhhcc-ccccCCcccCCCccHHHHhhhhhcccccc
Confidence 3456678999999997 3466777765554332 333333 56678889988888888888775443
Q ss_pred cccHHHHHHHHHhccCCCCCCcccccCCccChhHHHHHHHHHHHhCCCC--cccHHHHHHHHHhcCCCCCCcccCCC---
Q 020097 110 NIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWS--GMDRERAKAYILNCQSYDGGFGLTPG--- 184 (331)
Q Consensus 110 ~~~~~~~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~--~~~~~~~~~~I~~~Q~~dGGFg~~p~--- 184 (331)
....+++++||.+.|.++|+|.. .+ +.-.+..+-.++.++++.+... ...+.+++.|+.+||++||||+....
T Consensus 351 ~~~i~~a~e~LL~~Q~~~GsW~g-~w-~v~~iY~~s~a~~~l~~~g~~~~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~ 428 (517)
T COG1657 351 GQPIERALEWLLSDQEPDGSWYG-RW-GVCYIYGTSGALSALALVGETDENEVLVRKLISWLVSKQMPDGGWGEAKEAIS 428 (517)
T ss_pred CCcccHHHhhhhhhccccCceee-EE-EEEEEEehhhhhhhhhccCccccchHHHHHHHHHhhhccccCCCccccccccc
Confidence 34456799999999999999974 34 2222233334555555555321 23578999999999999999998622
Q ss_pred -------CCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCccccCCC
Q 020097 185 -------SESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRA 242 (331)
Q Consensus 185 -------~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr~ 242 (331)
..+-.-.|.+|+..+....+.. ...++..++++.+.|.++|.+..++
T Consensus 429 ~~~~~~t~~sl~~~~~wal~~~~~a~~~~-----------~~~i~~~~~~~~~~~~~~g~~~~~~ 482 (517)
T COG1657 429 DPVYTGTESSLLVQTNWALIALLTALEPN-----------QEAIKPGINLLVSDQEPDGSWREAE 482 (517)
T ss_pred ccccccccchhhcchhHHHHHHHHhcccc-----------hhhhcccccccccCcCCCCccccce
Confidence 1223345667777766654432 2237789999999999999888653
No 55
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=98.14 E-value=4.6e-06 Score=82.40 Aligned_cols=156 Identities=21% Similarity=0.268 Sum_probs=104.5
Q ss_pred CcccHHHHHHHHHhcCCCCCCcccCCCC-------------------CCChhhHHHHHHHHHHcCCccccccccCCCCCC
Q 020097 158 SGMDRERAKAYILNCQSYDGGFGLTPGS-------------------ESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSI 218 (331)
Q Consensus 158 ~~~~~~~~~~~I~~~Q~~dGGFg~~p~~-------------------esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~ 218 (331)
+..+.+++++||...|+..|||...+-. .+-+..|-..+.+|..++...+.. ..
T Consensus 279 ~~~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~~~~~~s~adct~~~~~~l~a~~~yl~~~-------~~ 351 (517)
T COG1657 279 SLPNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVKAMVDPSTADCTHRVVLALAALNAYLEAY-------DG 351 (517)
T ss_pred chhhHHhhhhHhhhcccccCceeeeccccccHHHhhCCHhhccccccCCcccCCCccHHHHhhhhhccccc-------cC
Confidence 4567788999999999999999875321 122233444445555544332100 03
Q ss_pred CCHHHHHHHHHhcCCCCccccCCCCCCCCcchhhHHHHHHHHhCCCCC-----CCHHHHHHHHHhccCCCCCcCCCCCCC
Q 020097 219 IDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNL-----IDKEALRGFLLTCQSQYGGFGKCPGDL 293 (331)
Q Consensus 219 ~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~~yt~~~~a~L~lL~~~~~-----~~~~~~~~~L~~~Q~~~GGf~~~p~~~ 293 (331)
.++++++.||+++|.++|.|-|+.. .||+|-....+..+..... .-+.+++.|+..||+++|||+..-...
T Consensus 352 ~~i~~a~e~LL~~Q~~~GsW~g~w~----v~~iY~~s~a~~~l~~~g~~~~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~ 427 (517)
T COG1657 352 QPIERALEWLLSDQEPDGSWYGRWG----VCYIYGTSGALSALALVGETDENEVLVRKLISWLVSKQMPDGGWGEAKEAI 427 (517)
T ss_pred CcccHHHhhhhhhccccCceeeEEE----EEEEEehhhhhhhhhccCccccchHHHHHHHHHhhhccccCCCcccccccc
Confidence 4678899999999999999999875 7888866555555443212 225789999999999999999864433
Q ss_pred CCH----------HHHHHHHHHHHhcCCCCCCCCCcccccc
Q 020097 294 PDL----------YHSFYGYTAFSLLEEPGLNPLCAELGMT 324 (331)
Q Consensus 294 ~D~----------~hT~~al~aLsll~~~~~~~~~~~~~~~ 324 (331)
++. ..|.+++.++-...++.-..+.|..+.+
T Consensus 428 ~~~~~~~t~~sl~~~~~wal~~~~~a~~~~~~~i~~~~~~~ 468 (517)
T COG1657 428 SDPVYTGTESSLLVQTNWALIALLTALEPNQEAIKPGINLL 468 (517)
T ss_pred cccccccccchhhcchhHHHHHHHHhcccchhhhccccccc
Confidence 333 3566777777777776555566655544
No 56
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=98.05 E-value=7.1e-05 Score=68.28 Aligned_cols=183 Identities=17% Similarity=0.196 Sum_probs=113.6
Q ss_pred hhhhhhhhHHHHHhhhHHhhcCCCCCcCh---HHHHHHHHHhccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccCC-
Q 020097 12 QYQEINRITLAHFAISGLCLLGALDRVDK---DAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHN- 87 (331)
Q Consensus 12 ~~~d~~r~~~~y~~l~~L~lL~~~~~~~~---~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~~~~~~~~~~~~- 87 (331)
....++..|++=|++..|....+...+|. ++.++||.+.|+ .|| .|..... .+ +..+..
T Consensus 20 ~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~--------~dG---~F~e~~~-~~-----~~~~~g~ 82 (246)
T PF07678_consen 20 SSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQ--------PDG---SFEEDGP-VI-----HREMQGG 82 (246)
T ss_dssp TTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBE--------TTS---EB--SSS--S-----SGGGSGG
T ss_pred ccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhc--------CCC---ccccCCC-cc-----ccccCCC
Confidence 34567889999999999999988755554 578999999997 454 4432221 01 000110
Q ss_pred -CCcHHHHHHHHHHHHHhCCC----C--CcccHHHHHHHHHhccCCCCCCcccccCCccChhHHHH-HH--HHHHHhCCC
Q 020097 88 -GSNLASTYCALAILKAVGYN----F--ANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYC-AA--AICFLLEDW 157 (331)
Q Consensus 88 -~~~l~~Ty~Al~~L~~lg~~----~--~~~~~~~~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty~-al--~~l~lL~~~ 157 (331)
...+..|-+.+.+|.-.+.- . .....+++++||.+.... ....|. |+ -++.+.+
T Consensus 83 ~~~~~~lTA~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~~~~--------------~~~~Y~lAl~aYAL~la~-- 146 (246)
T PF07678_consen 83 VEDDIALTAYVLIALLEAGSLCDSEKPEYENAINKALNYLERHLDN--------------IQDPYTLALVAYALALAG-- 146 (246)
T ss_dssp GTHHHHHHHHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHHHGC--------------TSSHHHHHHHHHHHHHTT--
T ss_pred CCCCeeehHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhccc--------------cCCHHHHHHHHHHHHhhc--
Confidence 24677888877777766521 1 112246789999877211 011332 22 2334443
Q ss_pred CcccHHHHHHHHHhcCCCCCCcccCCCCC--------------CChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHH
Q 020097 158 SGMDRERAKAYILNCQSYDGGFGLTPGSE--------------SHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPL 223 (331)
Q Consensus 158 ~~~~~~~~~~~I~~~Q~~dGGFg~~p~~e--------------sh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~ 223 (331)
+....+++.+-|.+....+||...-+..+ ..+..|..|+.++...+..+ ....
T Consensus 147 ~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~vEtTaYaLLa~l~~~~~~-------------~~~~ 213 (246)
T PF07678_consen 147 DSPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDVETTAYALLALLKRGDLE-------------EASP 213 (246)
T ss_dssp TCHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHHHHHHHHHHHHHHHTCHH-------------HHHH
T ss_pred ccchHHHHHHHHHHhhhhccccCcccCCcccccccccccccchHHHHHHHHHHHHHHhcccHH-------------HHHH
Confidence 44677888888988888877653221111 23567888887777664432 4678
Q ss_pred HHHHHHhcCCCCccccC
Q 020097 224 LLSWCLQRQAADGGFQG 240 (331)
Q Consensus 224 ~~~wL~~~Q~~dGGf~g 240 (331)
+++||.+.|+..|||..
T Consensus 214 iv~WL~~qr~~~Ggf~S 230 (246)
T PF07678_consen 214 IVRWLISQRNSGGGFGS 230 (246)
T ss_dssp HHHHHHHCTTTTSSTSS
T ss_pred HHHHHHHhcCCCCccCc
Confidence 99999999999999985
No 57
>PLN02592 ent-copalyl diphosphate synthase
Probab=97.43 E-value=0.0041 Score=65.31 Aligned_cols=116 Identities=18% Similarity=0.232 Sum_probs=77.0
Q ss_pred HHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCccccCCCCC-CCC
Q 020097 169 ILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANK-PSD 247 (331)
Q Consensus 169 I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k-~~D 247 (331)
++.+|..||+|..+| .+|.+++.- .. -+++.+||.+....-| +|.|.. +.|
T Consensus 258 v~~~q~~~GS~~~SP------SaTAaaL~~-----~~---------------d~~cl~YL~~~~~k~~--GgVP~vyP~d 309 (800)
T PLN02592 258 LLKLQCQDGSFLFSP------SSTAFALMQ-----TK---------------DENCLEYLNKAVQRFN--GGVPNVYPVD 309 (800)
T ss_pred HhcccCCCCCccCCc------hHHHHHHhc-----cC---------------chHHHHHHHHHHHHcC--CCCCCCCCCc
Confidence 677889999999988 466666532 11 2468899977544322 235554 346
Q ss_pred cchhhHHHHHHHHhCCCCCC--CHHHHHHHHHhccCCCC-CcCCCCCCCCCHHHHHHHHHHHHhcCCCC
Q 020097 248 TCYAFWIGSVLRMLGGYNLI--DKEALRGFLLTCQSQYG-GFGKCPGDLPDLYHSFYGYTAFSLLEEPG 313 (331)
Q Consensus 248 ~~yt~~~~a~L~lL~~~~~~--~~~~~~~~L~~~Q~~~G-Gf~~~p~~~~D~~hT~~al~aLsll~~~~ 313 (331)
..---|.+-+|.-||-...+ .++.+.++|.++-...| ||+. ....+|++.|..++-.|...|++-
T Consensus 310 ~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~-~~~~~Dld~TALaFRLLRqhGy~V 377 (800)
T PLN02592 310 LFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWAR-NSHVHDIDDTAMGFRLLRLHGHQV 377 (800)
T ss_pred HHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCccccc-CCCcCCHHHHHHHHHHHHHcCCCC
Confidence 66667999999999853322 24577777766543333 3432 122579999999999999998863
No 58
>PLN02279 ent-kaur-16-ene synthase
Probab=97.01 E-value=0.019 Score=60.44 Aligned_cols=113 Identities=15% Similarity=0.059 Sum_probs=77.0
Q ss_pred HHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCccccCCCCC-CCC
Q 020097 169 ILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANK-PSD 247 (331)
Q Consensus 169 I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k-~~D 247 (331)
|++.|..||+|..+| .+|.+++.- . . -+++++||.+.+..-|| |.|+. +.|
T Consensus 218 v~~~q~~~Gs~~~SP------saTAa~l~~-----~--------------~-~~~~~~yL~~~~~~~~g--~vP~~yp~~ 269 (784)
T PLN02279 218 VMKYQRKNGSLFNSP------STTAAAFSH-----L--------------Q-NAGCLRYLRSLLQKFGN--AVPTVYPLD 269 (784)
T ss_pred HHhhcCCCCCcccCc------HHHHHHHHc-----c--------------C-ChHHHHHHHHHHHhcCC--CCCCCCccc
Confidence 678899999999987 466665431 1 1 15799999886554342 45554 357
Q ss_pred cchhhHHHHHHHHhCCCCCC--CHHHHHHHHHhccCCCCCcCCCCCCCCCHHHHHHHHHHHHhcCCCCC
Q 020097 248 TCYAFWIGSVLRMLGGYNLI--DKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGL 314 (331)
Q Consensus 248 ~~yt~~~~a~L~lL~~~~~~--~~~~~~~~L~~~Q~~~GGf~~~p~~~~D~~hT~~al~aLsll~~~~~ 314 (331)
....-|.+.+|.-||-...+ .++.+++.+.++... | .++...|++.|..+.=.|-..|+.-.
T Consensus 270 ~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~~-~----~~~~~~Dl~~tAl~FRLLR~hGy~VS 333 (784)
T PLN02279 270 QYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQ-G----EEEIFLDLATCALAFRILRLNGYDVS 333 (784)
T ss_pred HHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhcc-c----ccCCCCCHHHHHHHHHHHHHcCCCCC
Confidence 77778999999999853322 245666666544432 2 23446799999999999999888643
No 59
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=96.73 E-value=0.0042 Score=57.59 Aligned_cols=105 Identities=17% Similarity=0.107 Sum_probs=57.7
Q ss_pred ccChhHHHHHHHHHHHhC-C-C---CcccHHHHHHHHHhcCCCCCCcccCC--CCCCChhhHHH---HHHHHHHcCCc--
Q 020097 138 EKDLRFVYCAAAICFLLE-D-W---SGMDRERAKAYILNCQSYDGGFGLTP--GSESHGGGTYC---AVASLRLMGFI-- 205 (331)
Q Consensus 138 ~~d~~~ty~al~~l~lL~-~-~---~~~~~~~~~~~I~~~Q~~dGGFg~~p--~~esh~~~Ty~---AlaaL~llg~~-- 205 (331)
+-|-..|+..+.-|.-+- . . .....+++++||++.|+++|||...- ...-|..-||+ .+.+|.+|...
T Consensus 40 TiDN~aT~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~ 119 (290)
T TIGR02474 40 TIDNGATVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIAN 119 (290)
T ss_pred cccCccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHh
Confidence 345566776654443331 1 1 12345889999999999999999862 11222223442 23333333211
Q ss_pred -cc--cccccCC-CCCCCCHHHHHHHHHhcCCCCccccCCC
Q 020097 206 -ED--NVLSKNT-SSSIIDLPLLLSWCLQRQAADGGFQGRA 242 (331)
Q Consensus 206 -~~--~~~~~~~-~~~~~~~~~~~~wL~~~Q~~dGGf~gr~ 242 (331)
.. .+..+.. ......++++++||+..|..+||+.++.
T Consensus 120 ~~~~~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~W 160 (290)
T TIGR02474 120 GKDPFDVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTVW 160 (290)
T ss_pred ccCCcccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCch
Confidence 10 1110000 0002347899999999999988877544
No 60
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.069 Score=59.67 Aligned_cols=114 Identities=15% Similarity=0.093 Sum_probs=81.7
Q ss_pred cccCCCcchhhhhhhhhHHHHHhhhHHhhcCCCCCcChHHHHHHHH-HhccCCCCCCCCCCCCccccCCCCCCCCCCCCC
Q 020097 3 MYESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVL-SLQAHPSNKADLTNGEFYGFHGSPSSQLHPDDN 81 (331)
Q Consensus 3 ~l~~lp~~~~~~d~~r~~~~y~~l~~L~lL~~~~~~~~~~~~~~i~-~~q~~~~~~~~~~dg~~ggf~~~~~~~~~~~~~ 81 (331)
.|.-||..+-.+.--.+.-.++.+.=|+..+...+..+++++++|. ..|. ......+||-|..|.....
T Consensus 929 ~Ll~lP~GcGEQnMi~faPni~v~~YL~~t~q~~~~~k~ka~~~l~~Gyqr--qL~yk~~DgSySaFg~~~~-------- 998 (1436)
T KOG1366|consen 929 NLLRLPYGCGEQNMINFAPNIYVLKYLPKTNQLTPELKRKALKFLEQGYQR--QLTYKRADGSYSAFGSSDR-------- 998 (1436)
T ss_pred HhccCCCCcccceeecccchhhHHHHHhhhhccChhHHHHHHHHHHHHHHH--HHhhhccCCChhhhcCCCC--------
Confidence 4677888888888888888889999999988876555666666664 2221 1223447888888876332
Q ss_pred CCccCCCCcHHHHHHHHHHHHHhCCCC--CcccHHHHHHHHHhccCCCCCCcc
Q 020097 82 GVLMHNGSNLASTYCALAILKAVGYNF--ANIDSKSILTSMRNLQQHDGSFMP 132 (331)
Q Consensus 82 ~~~~~~~~~l~~Ty~Al~~L~~lg~~~--~~~~~~~~~~~l~~~q~~dG~f~~ 132 (331)
.+..|-|.+.+.++..-...+ +.--..++++||...|.++|+|..
T Consensus 999 ------~~stWLtafvlr~f~~a~~~i~id~~~i~~a~~wl~~~Qk~~GsF~e 1045 (1436)
T KOG1366|consen 999 ------SGSTWLTAFVLRVFSQAKEYIFIDPNVITQALNWLSQQQKENGSFKE 1045 (1436)
T ss_pred ------cccHHHHHHHHHHhhhccCceEecHHHHHHHHHHHHHhhccCceEec
Confidence 357999999998887665322 222246799999999999999953
No 61
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=95.51 E-value=0.16 Score=47.26 Aligned_cols=114 Identities=11% Similarity=0.042 Sum_probs=61.5
Q ss_pred HHHHHHHHhccCCCCCCcccc-cCCccChhHHHH---HHHHHHHhCCC----------C-------cccHHHHHHHHHhc
Q 020097 114 KSILTSMRNLQQHDGSFMPIH-FGAEKDLRFVYC---AAAICFLLEDW----------S-------GMDRERAKAYILNC 172 (331)
Q Consensus 114 ~~~~~~l~~~q~~dG~f~~~~-~~~~~d~~~ty~---al~~l~lL~~~----------~-------~~~~~~~~~~I~~~ 172 (331)
.+.++||.+.|.++|||.... ..+...-..||. .+.++.+|... . ....+|+++||+++
T Consensus 70 ~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid~ILkt 149 (290)
T TIGR02474 70 RKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDPFDVFPDSTRTRAKTAVTKGIECILKT 149 (290)
T ss_pred HHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999996432 111111123331 23344444210 0 12357899999999
Q ss_pred CCCCCCcccCCC---------------CCCC--hh-hHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCC
Q 020097 173 QSYDGGFGLTPG---------------SESH--GG-GTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAA 234 (331)
Q Consensus 173 Q~~dGGFg~~p~---------------~esh--~~-~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~ 234 (331)
|-++||+-..-+ -|.- .+ .|.-.|.-|.-+....+++ ...++.+++|+.+.+-+
T Consensus 150 Q~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps~~i--------~~ai~~A~~W~~~~~i~ 221 (290)
T TIGR02474 150 QVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQPNPSAEI--------KEAIRAGVAWFDTSRIR 221 (290)
T ss_pred hcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCCCCCHHH--------HHHHHHHHHHHHHCCCC
Confidence 988875543310 1111 11 1222333333333222222 23478999999998765
Q ss_pred C
Q 020097 235 D 235 (331)
Q Consensus 235 d 235 (331)
+
T Consensus 222 g 222 (290)
T TIGR02474 222 G 222 (290)
T ss_pred C
Confidence 3
No 62
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=93.47 E-value=11 Score=39.23 Aligned_cols=133 Identities=18% Similarity=0.154 Sum_probs=91.6
Q ss_pred hhhhhHHHHHhhhHHhhcCCCCCcChHHHHHHHHHhccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCCCcHHHH
Q 020097 15 EINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLAST 94 (331)
Q Consensus 15 d~~r~~~~y~~l~~L~lL~~~~~~~~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~~~~~~~~~~~~~~~l~~T 94 (331)
..+.+.-+||++.+|++||.. ..+.+++.++|.+.-. +. .+++...
T Consensus 45 ~~~dLes~yyav~glk~Lg~~-~~~~~~~C~~~~~~~~-~s--------------------------------~~~~e~l 90 (636)
T PF05817_consen 45 PSSDLESAYYAVLGLKLLGIK-VPDSKAACKFLKKALD-ES--------------------------------SNDLESL 90 (636)
T ss_pred CcccHHHHHHHHhhHHHhCCC-CCChhhHHHHHHHhhc-cc--------------------------------cchHHHH
Confidence 456678899999999999986 3457888888876432 00 0259999
Q ss_pred HHHHHHHHHhCCCCCcccHHHHHHHHHhccCCCCCCcccccCCccChhHHHHHHHHHHHhCCC-CcccHHHHHHHHHhcC
Q 020097 95 YCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDW-SGMDRERAKAYILNCQ 173 (331)
Q Consensus 95 y~Al~~L~~lg~~~~~~~~~~~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~-~~~~~~~~~~~I~~~Q 173 (331)
|+|+.+...|+-... -.+++.+-+.+...+|. ++...|.++.++..|+.. ...+.+++++-|...+
T Consensus 91 fya~~~~~~L~C~~~--~~~~~~~~l~~~l~~~s-----------~~~~iy~av~sl~~lg~~v~~~~~~~v~k~l~~~l 157 (636)
T PF05817_consen 91 FYAASASKALKCKVS--VSNEVKSLLKAALSEDS-----------SVSQIYYAVSSLKLLGLKVDEADSDEVVKALQASL 157 (636)
T ss_pred HHHHHHHhhcCCccc--CcHHHHHHHHHHhcCCc-----------cHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHh
Confidence 999999999994433 13456666666554432 234599999999999742 2347888888888777
Q ss_pred CCCCCcccCCCCCCChhhHHHHHHHHHHcCC
Q 020097 174 SYDGGFGLTPGSESHGGGTYCAVASLRLMGF 204 (331)
Q Consensus 174 ~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~ 204 (331)
..|. ....+-.|+.++..++.
T Consensus 158 ~kdd----------s~~s~g~al~~aa~L~~ 178 (636)
T PF05817_consen 158 KKDD----------SLLSLGYALHAAAQLSK 178 (636)
T ss_pred cccc----------cHHHHHHHHHHHHhhcc
Confidence 7753 33444556666666653
No 63
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=90.13 E-value=0.7 Score=43.76 Aligned_cols=95 Identities=23% Similarity=0.236 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCccccCC
Q 020097 162 RERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGR 241 (331)
Q Consensus 162 ~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr 241 (331)
++++++.|++.|.+||-||. ..+|--|+.+|...+....+. ..+..++.++++... .+|.|..-
T Consensus 217 i~~~~~kIl~~q~~~G~~GN-------iySTglAmQAL~~~~~~~~~~--------~w~C~k~~~~ll~~i-~~G~F~nP 280 (326)
T PF01122_consen 217 IRSLVEKILSQQKPNGLFGN-------IYSTGLAMQALSVSPSPPSES--------EWNCQKALDALLKEI-SQGAFQNP 280 (326)
T ss_dssp HHHHHHHHHHTB-TTS-BSS-------TTTHHHHHHHHTT-SS-SSHH--------HHHHHHHHHHHHHHH-TTTTT-SH
T ss_pred HHHHHHHHHHhcCCCCcccc-------hhhHHHHHHHHhcCCCCCcch--------hhHHHHHHHHHHHHh-hcCCCCCH
Confidence 46788999999999999994 678999999999988754210 235788999998853 47988841
Q ss_pred CCCCCCcchhhHHHHHHHHhCCCCCCCHHHHHHHHHhccCCCCCcC
Q 020097 242 ANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFG 287 (331)
Q Consensus 242 ~~k~~D~~yt~~~~a~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~ 287 (331)
--+.-.|-.|......|+.. ..|+.++|-+-
T Consensus 281 ----------~a~aQiLPaL~gKTYLDv~~-----~~C~~~~~~~~ 311 (326)
T PF01122_consen 281 ----------MAIAQILPALNGKTYLDVNS-----VDCSSPDGNLN 311 (326)
T ss_dssp ----------HHHHHHHHHHTT--GGGGGS-------SSS--EE--
T ss_pred ----------HHHHHHHHHHcCCCccccCC-----CCCCCCCCccc
Confidence 12334454454444444333 57888887765
No 64
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=88.32 E-value=18 Score=37.74 Aligned_cols=177 Identities=19% Similarity=0.229 Sum_probs=101.5
Q ss_pred hhHHHHHhhhHHhhcCCCCCcC-hHHHHHHHHHhccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCCCcHHHHHH
Q 020097 18 RITLAHFAISGLCLLGALDRVD-KDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYC 96 (331)
Q Consensus 18 r~~~~y~~l~~L~lL~~~~~~~-~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~~~~~~~~~~~~~~~l~~Ty~ 96 (331)
-+.-.||++.+.+.|+=. .. .+++.+-+..--+ +.+.+...|+
T Consensus 86 ~~e~lfya~~~~~~L~C~--~~~~~~~~~~l~~~l~----------------------------------~~s~~~~iy~ 129 (636)
T PF05817_consen 86 DLESLFYAASASKALKCK--VSVSNEVKSLLKAALS----------------------------------EDSSVSQIYY 129 (636)
T ss_pred hHHHHHHHHHHHhhcCCc--ccCcHHHHHHHHHHhc----------------------------------CCccHHHHHH
Confidence 488999999999999832 22 4555555654322 1246788999
Q ss_pred HHHHHHHhCCCCCcccHHHHHHHHHhccCCCCCCcccccCCccChhHHHHHHHHHHHhCCCCcc-c-HHHHHHHHHhcCC
Q 020097 97 ALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGM-D-RERAKAYILNCQS 174 (331)
Q Consensus 97 Al~~L~~lg~~~~~~~~~~~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~-~-~~~~~~~I~~~Q~ 174 (331)
|+.+|..+|.+++..|.+++++-|...+..|.+-.. +-.|+.++..|+..... . .+++-+-+..--.
T Consensus 130 av~sl~~lg~~v~~~~~~~v~k~l~~~l~kdds~~s-----------~g~al~~aa~L~~~a~l~~~~~~ieD~v~qaDE 198 (636)
T PF05817_consen 130 AVSSLKLLGLKVDEADSDEVVKALQASLKKDDSLLS-----------LGYALHAAAQLSKQADLADIVERIEDAVAQADE 198 (636)
T ss_pred HHHHHHHcCCCcccccHHHHHHHHHHHhcccccHHH-----------HHHHHHHHHhhccchhhhHHHHHHHHHHHhhhh
Confidence 999999999887666788899999988877655432 22344555555421111 1 1233332322222
Q ss_pred CCCCcccCCCCCCChhhHHHHHHHHHHc----CCccccccccCCCCCCCCHHHHHHHHHhcCCCCccccCCCCCCCCcch
Q 020097 175 YDGGFGLTPGSESHGGGTYCAVASLRLM----GFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCY 250 (331)
Q Consensus 175 ~dGGFg~~p~~esh~~~Ty~AlaaL~ll----g~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~~y 250 (331)
-||..-...|+ ...|.-.|.++.-+ |..+ .+ ....+-++.+||++|... .+.+-
T Consensus 199 v~~~~LqFegg---Ls~TA~vv~g~~~la~~~~k~~-~i-------~~dQivklanylLsrr~v-----------~s~k~ 256 (636)
T PF05817_consen 199 VDGKYLQFEGG---LSTTALVVRGIYKLADAVGKKP-PI-------KEDQIVKLANYLLSRRSV-----------QSPKD 256 (636)
T ss_pred hcccceeecCC---chhhHHHHHHHHHHHHhhCCCC-CC-------CHHHHHHHHHHHhcCCCC-----------CCHHH
Confidence 33333322222 33455444444432 2222 11 012356789999998642 24555
Q ss_pred hhHHHHHHHHhCC
Q 020097 251 AFWIGSVLRMLGG 263 (331)
Q Consensus 251 t~~~~a~L~lL~~ 263 (331)
.|..+.+|+.|..
T Consensus 257 a~~l~~al~~L~~ 269 (636)
T PF05817_consen 257 AFNLLEALKSLSS 269 (636)
T ss_pred HHHHHHHHHHHhh
Confidence 6777788877754
No 65
>PLN02592 ent-copalyl diphosphate synthase
Probab=87.05 E-value=1.7 Score=46.14 Aligned_cols=42 Identities=21% Similarity=0.130 Sum_probs=30.6
Q ss_pred cHHHHHHHHHhcCCCCCCcccCCCCC--CChhhHHHHHHHHHHc
Q 020097 161 DRERAKAYILNCQSYDGGFGLTPGSE--SHGGGTYCAVASLRLM 202 (331)
Q Consensus 161 ~~~~~~~~I~~~Q~~dGGFg~~p~~e--sh~~~Ty~AlaaL~ll 202 (331)
.-..+++||++.|.+|||||..+..- --+-.|.+||-||.-=
T Consensus 116 ~FP~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w 159 (800)
T PLN02592 116 QFPSSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSW 159 (800)
T ss_pred CCHHHHHHHHHccCCCCCCCCCCCcchHHHHHhHHHHHHHHHHh
Confidence 44689999999999999999853211 1245688888777663
No 66
>PLN02279 ent-kaur-16-ene synthase
Probab=82.74 E-value=2.6 Score=44.79 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=33.5
Q ss_pred ccHHHHHHHHHhcCCCCCCcccCCCCC----CChhhHHHHHHHHHHcCCc
Q 020097 160 MDRERAKAYILNCQSYDGGFGLTPGSE----SHGGGTYCAVASLRLMGFI 205 (331)
Q Consensus 160 ~~~~~~~~~I~~~Q~~dGGFg~~p~~e----sh~~~Ty~AlaaL~llg~~ 205 (331)
..-..+++||++.|.+||+||..+... --+-+|.+||.||.-=+..
T Consensus 73 p~Fp~~~~wil~nQ~~dGsWg~~~~~~~~~~D~ll~TlAcvlAL~~w~~~ 122 (784)
T PLN02279 73 PLFPECVKWLLENQLEDGSWGLPHDHPLLVKDALSSTLASILALKKWGVG 122 (784)
T ss_pred CCChHHHHHHHhcCCCCCCCCCCCCCcchhHHhhHHHHHHHHHHHHHhcC
Confidence 445789999999999999999753211 1245788888888775443
No 67
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=77.40 E-value=50 Score=31.92 Aligned_cols=160 Identities=21% Similarity=0.244 Sum_probs=78.6
Q ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHhccCCCCCCcccccCCccChhHH----HHHHHHHHHhCCCCc----ccHHHHHH
Q 020097 96 CALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFV----YCAAAICFLLEDWSG----MDRERAKA 167 (331)
Q Consensus 96 ~Al~~L~~lg~~~~~~~~~~~~~~l~~~q~~dG~f~~~~~~~~~d~~~t----y~al~~l~lL~~~~~----~~~~~~~~ 167 (331)
..-..|..+|.+++....+..++.+.+....||=|.-.+ ....|-... |..+..+.+.+...+ .-++++.+
T Consensus 160 ~v~~~L~~~G~~~d~~~i~~~l~~~e~~Y~GdGWY~DG~-~~~~DYYns~aih~y~l~~~~~~~~~~~~~~~~~~~Ra~~ 238 (361)
T PF10022_consen 160 MVEAFLKKVGEEYDEERIDYDLERIEEWYLGDGWYSDGP-EFQFDYYNSWAIHPYLLLYARLMGDEDPERAARYRQRAQR 238 (361)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHHHhccCCccccCC-ccCCcchHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHH
Confidence 334445556777765444667777888888776554322 122232222 234445555554321 12355666
Q ss_pred HHHhcC---CCCCCcccCCCCCCChhhHHH---HHHHHHHcCCccccc-cccCCCCCCCCHHHHHHHHHhc-CCC--Cc-
Q 020097 168 YILNCQ---SYDGGFGLTPGSESHGGGTYC---AVASLRLMGFIEDNV-LSKNTSSSIIDLPLLLSWCLQR-QAA--DG- 236 (331)
Q Consensus 168 ~I~~~Q---~~dGGFg~~p~~esh~~~Ty~---AlaaL~llg~~~~~~-~~~~~~~~~~~~~~~~~wL~~~-Q~~--dG- 236 (331)
|..... .+||.+- |.+.| +.|=|+ .++++++.+.++..+ ..... +.-..+.++|..++ ... ||
T Consensus 239 fa~~~~~~f~~dG~~~--~~GRS-ltYRfA~~a~~~~~a~~~~lp~~~~~~g~v---R~~l~~~lr~~~~~p~~f~~~G~ 312 (361)
T PF10022_consen 239 FAEDYERMFSPDGAAP--PFGRS-LTYRFAAFAFLAAAALAGVLPEPLISPGQV---RRALSRVLRWWLEQPGIFDEDGW 312 (361)
T ss_pred HHHHHHHHcCCCCCcC--Ccccc-HHHHHHHHHHHHHHHHcCCCCccCCCHHHH---HHHHHHHHHHHHhCCCCCCCCCC
Confidence 655444 6788554 33332 233333 444455556533211 00000 01133455555554 332 33
Q ss_pred ---cccCCC----CCCCCcchhhHHHHHHHHhC
Q 020097 237 ---GFQGRA----NKPSDTCYAFWIGSVLRMLG 262 (331)
Q Consensus 237 ---Gf~gr~----~k~~D~~yt~~~~a~L~lL~ 262 (331)
||.+.- +...-+...||++.++-.|+
T Consensus 313 LtiG~~~~~~~m~e~Y~~~gSpYwa~k~Fl~L~ 345 (361)
T PF10022_consen 313 LTIGFYGPNPPMAENYNSPGSPYWASKAFLPLG 345 (361)
T ss_pred cCCCcCCCChhhhhccCCCCCHHHHHHHHHHhc
Confidence 555521 12235567799999997776
No 68
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=76.58 E-value=6.7 Score=44.45 Aligned_cols=90 Identities=11% Similarity=0.048 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHhCCCCcccHHHHHHHHH-------hcCCCCCCcccCCC--CCCChhhHHHHHHHHHHcCCcccccccc
Q 020097 142 RFVYCAAAICFLLEDWSGMDRERAKAYIL-------NCQSYDGGFGLTPG--SESHGGGTYCAVASLRLMGFIEDNVLSK 212 (331)
Q Consensus 142 ~~ty~al~~l~lL~~~~~~~~~~~~~~I~-------~~Q~~dGGFg~~p~--~esh~~~Ty~AlaaL~llg~~~~~~~~~ 212 (331)
-.++.++.=|...+.+++..+++++++|. ..+++||.|+..-. .......|..++-++......- .+
T Consensus 946 aPni~v~~YL~~t~q~~~~~k~ka~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWLtafvlr~f~~a~~~i-~i--- 1021 (1436)
T KOG1366|consen 946 APNIYVLKYLPKTNQLTPELKRKALKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWLTAFVLRVFSQAKEYI-FI--- 1021 (1436)
T ss_pred cchhhHHHHHhhhhccChhHHHHHHHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHHHHHHHHHhhhccCce-Ee---
Confidence 34555666566666777777788887765 56689999987643 3334555666666666553221 00
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCCcccc
Q 020097 213 NTSSSIIDLPLLLSWCLQRQAADGGFQ 239 (331)
Q Consensus 213 ~~~~~~~~~~~~~~wL~~~Q~~dGGf~ 239 (331)
....+.++++||.++|.++|.|.
T Consensus 1022 ----d~~~i~~a~~wl~~~Qk~~GsF~ 1044 (1436)
T KOG1366|consen 1022 ----DPNVITQALNWLSQQQKENGSFK 1044 (1436)
T ss_pred ----cHHHHHHHHHHHHHhhccCceEe
Confidence 12347789999999999999987
No 69
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=66.13 E-value=5.7 Score=37.06 Aligned_cols=144 Identities=16% Similarity=0.074 Sum_probs=67.7
Q ss_pred cChhHHHHHHHHHHHhCCC--C---cccHHHHHHHHHhcCCCCCCcccC-CC-CCCChhhHH---HHHHHHHHcC-----
Q 020097 139 KDLRFVYCAAAICFLLEDW--S---GMDRERAKAYILNCQSYDGGFGLT-PG-SESHGGGTY---CAVASLRLMG----- 203 (331)
Q Consensus 139 ~d~~~ty~al~~l~lL~~~--~---~~~~~~~~~~I~~~Q~~dGGFg~~-p~-~esh~~~Ty---~AlaaL~llg----- 203 (331)
-|-..|+..+.-|.-+-.. + .....|.++||++-|-++|||... |- ..-|...|| ..+..|.+|.
T Consensus 36 iDN~aT~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~ 115 (289)
T PF09492_consen 36 IDNDATTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEG 115 (289)
T ss_dssp -GGGTTHHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT
T ss_pred ccChhHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhh
Confidence 3445666655444333111 1 123578999999999999999986 32 123444455 2444444432
Q ss_pred CccccccccCC-CCCCCCHHHHHHHHHhcCCC----Ccccc------------CCCCCCCCcchhhHHHHHHHHhCCCCC
Q 020097 204 FIEDNVLSKNT-SSSIIDLPLLLSWCLQRQAA----DGGFQ------------GRANKPSDTCYAFWIGSVLRMLGGYNL 266 (331)
Q Consensus 204 ~~~~~~~~~~~-~~~~~~~~~~~~wL~~~Q~~----dGGf~------------gr~~k~~D~~yt~~~~a~L~lL~~~~~ 266 (331)
..+.+++++.. ......+++++++|+..|.. -.+|. +|...++-.+-+=-+.....|+...+.
T Consensus 116 ~~~~~~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~p 195 (289)
T PF09492_consen 116 KGDFAFVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSGSESVGIVRFLMSLPNP 195 (289)
T ss_dssp -TTSTTS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TTT-SB---STT--SSEECCCHHHHHHHHCTSSS-
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcccccccccccCCCcccccccHHHHHHHHhcCCCC
Confidence 22211111000 00012467899999999983 23554 233333444544455555556553321
Q ss_pred C-----CHHHHHHHHHhccCC
Q 020097 267 I-----DKEALRGFLLTCQSQ 282 (331)
Q Consensus 267 ~-----~~~~~~~~L~~~Q~~ 282 (331)
- .++.++.|+.+..-.
T Consensus 196 s~~v~~aI~~AvaWl~~~ki~ 216 (289)
T PF09492_consen 196 SPEVLAAIEAAVAWLESVKIP 216 (289)
T ss_dssp -HHHHHHHHHHHHHHCCTSEE
T ss_pred CHHHHHHHHHHHHHHHhCcCC
Confidence 1 257889998765543
No 70
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=63.86 E-value=7.9 Score=36.75 Aligned_cols=75 Identities=21% Similarity=0.238 Sum_probs=43.0
Q ss_pred cHHHHHHHHHHHHHhCCCCCc--ccHHHHHHHHHhccCCCCCCcccccCCccChhHHHHHHHHHHHhCCCCcccHHHHHH
Q 020097 90 NLASTYCALAILKAVGYNFAN--IDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKA 167 (331)
Q Consensus 90 ~l~~Ty~Al~~L~~lg~~~~~--~~~~~~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~~~ 167 (331)
|+-+|--|+++|...+..... .+-.++.+.+.+.. ++|.|.. +. .+..+|=.|...+..|+..
T Consensus 236 NiySTglAmQAL~~~~~~~~~~~w~C~k~~~~ll~~i-~~G~F~n-P~----------a~aQiLPaL~gKTYLDv~~--- 300 (326)
T PF01122_consen 236 NIYSTGLAMQALSVSPSPPSESEWNCQKALDALLKEI-SQGAFQN-PM----------AIAQILPALNGKTYLDVNS--- 300 (326)
T ss_dssp STTTHHHHHHHHTT-SS-SSHHHHHHHHHHHHHHHHH-TTTTT-S-HH----------HHHHHHHHHTT--GGGGGS---
T ss_pred chhhHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHh-hcCCCCC-HH----------HHHHHHHHHcCCCccccCC---
Confidence 677899999999998876543 45678899988864 5899963 31 2344554444334455444
Q ss_pred HHHhcCCCCCCccc
Q 020097 168 YILNCQSYDGGFGL 181 (331)
Q Consensus 168 ~I~~~Q~~dGGFg~ 181 (331)
.+|+.++|-+-.
T Consensus 301 --~~C~~~~~~~~~ 312 (326)
T PF01122_consen 301 --VDCSSPDGNLNP 312 (326)
T ss_dssp ----SSS--EE---
T ss_pred --CCCCCCCCcccc
Confidence 478888887553
No 71
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=60.97 E-value=13 Score=34.83 Aligned_cols=118 Identities=12% Similarity=0.105 Sum_probs=54.0
Q ss_pred HHHHHHHHhccCCCCCCccc-ccCCccChhHHH---HHHHHHHHhC----CCCc-------------ccHHHHHHHHHhc
Q 020097 114 KSILTSMRNLQQHDGSFMPI-HFGAEKDLRFVY---CAAAICFLLE----DWSG-------------MDRERAKAYILNC 172 (331)
Q Consensus 114 ~~~~~~l~~~q~~dG~f~~~-~~~~~~d~~~ty---~al~~l~lL~----~~~~-------------~~~~~~~~~I~~~ 172 (331)
.+.++||.+.|-|+|||-.. |..+...-..|| ..+.++.+|. ...+ ...+|.+++|+++
T Consensus 65 ~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~~~~~~v~~~~~~r~~~A~~kgi~ciL~t 144 (289)
T PF09492_consen 65 LKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGKGDFAFVDESLRARARAAVDKGIDCILKT 144 (289)
T ss_dssp HHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-TTSTTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999542 221111222333 2334444442 1111 1357899999999
Q ss_pred CCCC----CCcccC-------CC----CCCC-h--hhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCC
Q 020097 173 QSYD----GGFGLT-------PG----SESH-G--GGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAA 234 (331)
Q Consensus 173 Q~~d----GGFg~~-------p~----~esh-~--~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~ 234 (331)
|-.. -+|+.- |. -|.- . ..|.-.|.-|.-+-...+++ ...++.+++|+.+.+-+
T Consensus 145 Qi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps~~v--------~~aI~~AvaWl~~~ki~ 216 (289)
T PF09492_consen 145 QIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSGSESVGIVRFLMSLPNPSPEV--------LAAIEAAVAWLESVKIP 216 (289)
T ss_dssp S-EETTEE----SEE-TTT-SB---STT--SSEECCCHHHHHHHHCTSSS--HHH--------HHHHHHHHHHHCCTSEE
T ss_pred HcccCCCCCchhhccCcccccccccccCCCcccccccHHHHHHHHhcCCCCCHHH--------HHHHHHHHHHHHhCcCC
Confidence 9732 356653 10 1111 1 11223333333333222222 23478899999987765
Q ss_pred Ccccc
Q 020097 235 DGGFQ 239 (331)
Q Consensus 235 dGGf~ 239 (331)
+.-|.
T Consensus 217 g~~~~ 221 (289)
T PF09492_consen 217 GKRWE 221 (289)
T ss_dssp EEEE-
T ss_pred CceeE
Confidence 44433
No 72
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=60.07 E-value=2.2e+02 Score=29.55 Aligned_cols=36 Identities=17% Similarity=0.104 Sum_probs=29.2
Q ss_pred hhhhhHH--HHHhhhHHhhcCCCCCcChHHHHHHHHHhcc
Q 020097 15 EINRITL--AHFAISGLCLLGALDRVDKDAVSDWVLSLQA 52 (331)
Q Consensus 15 d~~r~~~--~y~~l~~L~lL~~~~~~~~~~~~~~i~~~q~ 52 (331)
|....|. .++++.+|..+|.. ...++.++|+.+.|.
T Consensus 291 ~Y~y~W~RD~~~~a~Al~~~G~~--~~a~~~l~~l~~~q~ 328 (616)
T TIGR01577 291 GYAYCWGRDASYIATALDRAGYH--DRVDRFFRWAMQTQS 328 (616)
T ss_pred CCceeccccHHHHHHHHHHCCCH--HHHHHHHHHHHHhhC
Confidence 4556676 88999999999864 467889999999996
No 73
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=37.05 E-value=4.9e+02 Score=26.92 Aligned_cols=77 Identities=14% Similarity=0.056 Sum_probs=42.4
Q ss_pred HHHHHHh-cCCC-CCCcccCCCC-----CCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCcc
Q 020097 165 AKAYILN-CQSY-DGGFGLTPGS-----ESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGG 237 (331)
Q Consensus 165 ~~~~I~~-~Q~~-dGGFg~~p~~-----esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGG 237 (331)
+++-|.+ +..+ +||+...+++ -+=.-.|+|...++..+|+...+............-+++++|+.++.++.|=
T Consensus 502 Tv~~I~~~L~~~~~ggi~RY~~D~y~~g~~w~i~T~wla~~~~~~g~~~~~~~~~~~~~~~~~A~~ll~~~~~~~~~~Gl 581 (616)
T TIGR01577 502 MAEAIEKHLTSPIVGGIKRYENDPYVGGNPWILTTLWLSQLYIKQGRILKALNHNGADIYLQKSKKLLKWVMDHRTDLGL 581 (616)
T ss_pred HHHHHHHHhcccCCCeeeCCCCCCCCCCCcHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHhcCCCCCC
Confidence 3555553 2232 5677665442 1223568888888888887642110000000001345789999999888777
Q ss_pred ccCC
Q 020097 238 FQGR 241 (331)
Q Consensus 238 f~gr 241 (331)
|...
T Consensus 582 l~Eq 585 (616)
T TIGR01577 582 LPEQ 585 (616)
T ss_pred Cccc
Confidence 7643
No 74
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=28.18 E-value=26 Score=35.55 Aligned_cols=66 Identities=21% Similarity=0.340 Sum_probs=42.1
Q ss_pred ccccCCCCCC-CCCCCCCCCccCCCCcHHHHHHHHHHHHHhCCCC-CcccHHHHHHHHHh-ccCCCCCCccc
Q 020097 65 FYGFHGSPSS-QLHPDDNGVLMHNGSNLASTYCALAILKAVGYNF-ANIDSKSILTSMRN-LQQHDGSFMPI 133 (331)
Q Consensus 65 ~ggf~~~~~~-~~~~~~~~~~~~~~~~l~~Ty~Al~~L~~lg~~~-~~~~~~~~~~~l~~-~q~~dG~f~~~ 133 (331)
+|||...... .|+........||.+.+.++|.- +..+.+++. +.+ .+.+++|+.+ +..++|||...
T Consensus 314 g~GFhRYsv~~~WHvpHFEKMLYDQ~QL~~aysd--afklT~de~y~~v-a~~I~qYl~rdlsh~~GGfysa 382 (786)
T KOG2244|consen 314 GGGFHRYSVDECWHVPHFEKMLYDQGQLANAYSD--AFKLTKDEMYSYV-ARDILQYLRRDLSHPEGGFYSA 382 (786)
T ss_pred cCceeeccccccccchhHHHHHhhHHHHHHHHHh--hhhcchhHHHHHH-HHHHHHHHHHhccCCCCCcccc
Confidence 5678665432 34433333456888999999973 444444432 222 2579999888 77899999753
No 75
>PF14160 FAM110_C: Centrosome-associated C terminus
Probab=20.71 E-value=54 Score=26.07 Aligned_cols=12 Identities=8% Similarity=0.470 Sum_probs=10.4
Q ss_pred HHHHHHHHHhcc
Q 020097 41 DAVSDWVLSLQA 52 (331)
Q Consensus 41 ~~~~~~i~~~q~ 52 (331)
-+||+|++.|++
T Consensus 98 ARIIKWLy~Ckk 109 (111)
T PF14160_consen 98 ARIIKWLYGCKK 109 (111)
T ss_pred hHHHHHHHhccc
Confidence 479999999985
Done!