Query 020097
Match_columns 331
No_of_seqs 205 out of 1821
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 11:45:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020097.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020097hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n4q_B Geranyltransferase type 100.0 3.2E-77 1.1E-81 570.6 29.1 315 1-327 30-350 (377)
2 3dra_B Geranylgeranyltransfera 100.0 9.2E-78 3.2E-82 573.5 23.4 304 1-328 14-381 (390)
3 3dss_B Geranylgeranyl transfer 100.0 2.7E-72 9.1E-77 529.9 31.5 289 2-327 29-319 (331)
4 3q7a_B Farnesyltransferase bet 100.0 4.3E-71 1.5E-75 539.2 20.5 285 1-313 71-425 (520)
5 2h6f_B Protein farnesyltransfe 100.0 2.9E-66 1E-70 503.6 22.9 289 2-326 84-406 (437)
6 3dss_B Geranylgeranyl transfer 100.0 9.7E-45 3.3E-49 341.9 26.9 238 38-312 18-255 (331)
7 2h6f_B Protein farnesyltransfe 100.0 1.7E-43 5.8E-48 343.7 20.9 237 37-311 72-313 (437)
8 3q7a_B Farnesyltransferase bet 100.0 2.7E-37 9.2E-42 301.4 16.1 238 38-312 61-340 (520)
9 1n4q_B Geranyltransferase type 100.0 3.2E-36 1.1E-40 287.5 20.9 235 38-312 20-286 (377)
10 3dra_B Geranylgeranyltransfera 100.0 6.5E-36 2.2E-40 285.1 19.6 248 38-312 4-311 (390)
11 2sqc_A Squalene-hopene cyclase 99.9 2.6E-23 9E-28 211.7 24.3 271 16-308 308-623 (631)
12 1w6k_A Lanosterol synthase; cy 99.9 6.1E-22 2.1E-26 204.1 22.3 272 17-309 384-719 (732)
13 2sqc_A Squalene-hopene cyclase 99.9 1E-21 3.5E-26 200.0 22.0 255 21-312 264-569 (631)
14 1w6k_A Lanosterol synthase; cy 99.8 2.9E-19 9.8E-24 184.3 19.4 221 88-312 383-665 (732)
15 2wy7_A Complement C3D fragment 99.6 9.8E-14 3.4E-18 129.3 21.8 247 2-309 8-289 (310)
16 1qqf_A Protein (complement C3D 99.6 2.2E-13 7.5E-18 124.9 20.2 234 13-307 3-271 (277)
17 1hzf_A Complement factor C4A; 99.4 2.6E-11 8.9E-16 115.5 21.4 251 3-308 46-358 (367)
18 2pn5_A TEP1R, thioester-contai 99.2 4E-10 1.4E-14 123.5 19.9 248 2-309 829-1101(1325)
19 1qqf_A Protein (complement C3D 99.2 2.5E-10 8.7E-15 104.4 13.0 141 163-311 41-236 (277)
20 2wy7_A Complement C3D fragment 99.1 4.6E-10 1.6E-14 104.4 12.0 141 163-311 57-252 (310)
21 2hr0_B Complement C3 alpha' ch 99.1 2.9E-09 1E-13 112.6 18.6 247 3-309 254-534 (915)
22 4acq_A Alpha-2-macroglobulin; 99.1 2.2E-09 7.5E-14 118.2 18.2 261 2-308 940-1240(1451)
23 2b39_A C3; thioester, immune d 98.7 2.7E-06 9.4E-11 95.1 24.4 248 2-308 1000-1280(1661)
24 1hzf_A Complement factor C4A; 98.6 3.1E-07 1.1E-11 87.2 13.6 131 162-311 93-249 (367)
25 1r76_A Pectate lyase; A-helica 98.6 1.7E-07 5.8E-12 89.1 10.3 175 113-288 83-335 (408)
26 4fxk_B Complement C4-A alpha c 98.6 1.5E-05 5.3E-10 82.6 24.9 112 2-132 322-440 (767)
27 3cu7_A Complement C5; Mg domai 98.4 2.3E-06 7.8E-11 95.8 15.9 250 2-308 998-1299(1676)
28 2pn5_A TEP1R, thioester-contai 98.4 1.2E-06 4.2E-11 96.0 13.1 138 138-282 840-999 (1325)
29 2hr0_B Complement C3 alpha' ch 98.3 6.7E-06 2.3E-10 86.9 13.6 176 115-311 303-497 (915)
30 1gxm_A Pectate lyase; mechanis 98.2 1.2E-06 4E-11 81.1 6.2 167 115-282 35-252 (332)
31 4acq_A Alpha-2-macroglobulin; 98.2 9.5E-06 3.2E-10 89.5 12.7 181 114-310 986-1197(1451)
32 1r76_A Pectate lyase; A-helica 98.1 3.2E-06 1.1E-10 80.3 5.2 119 40-180 177-334 (408)
33 2bb6_A TCII, TC II, transcobal 98.0 8.3E-06 2.8E-10 77.9 8.0 126 90-239 135-269 (414)
34 3prx_B Cobra venom factor; imm 98.0 7.9E-07 2.7E-11 98.7 0.0 250 3-309 985-1263(1642)
35 2bb6_A TCII, TC II, transcobal 97.9 4.3E-05 1.5E-09 72.9 9.1 126 162-311 154-286 (414)
36 1gxm_A Pectate lyase; mechanis 97.7 1.7E-05 5.9E-10 73.3 3.3 115 40-175 99-252 (332)
37 2b39_A C3; thioester, immune d 97.6 0.00075 2.6E-08 75.6 16.2 202 89-311 1015-1244(1661)
38 2pmv_A Gastric intrinsic facto 97.5 0.00019 6.5E-09 68.1 8.4 115 96-239 117-245 (399)
39 4fxk_B Complement C4-A alpha c 97.5 0.0044 1.5E-07 64.1 19.2 144 88-232 336-504 (767)
40 3sdr_A Alpha-bisabolene syntha 97.2 0.0017 5.8E-08 67.4 11.8 216 41-314 104-366 (817)
41 2pmv_A Gastric intrinsic facto 97.2 0.00076 2.6E-08 64.0 7.7 131 161-313 131-264 (399)
42 3p5p_A Taxadiene synthase; cla 97.2 0.0023 8E-08 65.9 11.9 215 40-313 55-313 (764)
43 3pya_A ENT-copalyl diphosphate 97.1 0.019 6.6E-07 58.6 17.8 119 169-316 193-315 (727)
44 3s9v_A Abietadiene synthase, c 96.8 0.027 9.4E-07 58.1 16.1 116 169-313 218-337 (785)
45 3cu7_A Complement C5; Mg domai 96.5 0.015 5.3E-07 65.1 12.6 127 169-313 1056-1202(1676)
46 3prx_B Cobra venom factor; imm 95.5 0.0023 8E-08 71.2 0.0 69 165-240 1035-1104(1642)
47 3s9v_A Abietadiene synthase, c 90.8 0.21 7.1E-06 51.6 5.0 59 160-230 74-134 (785)
48 3sdr_A Alpha-bisabolene syntha 90.8 0.25 8.4E-06 51.3 5.5 45 160-204 101-147 (817)
49 3p5p_A Taxadiene synthase; cla 88.3 0.42 1.4E-05 49.2 5.0 58 161-230 54-113 (764)
50 3pya_A ENT-copalyl diphosphate 87.9 0.47 1.6E-05 48.4 5.0 57 162-230 52-110 (727)
51 1wgn_A UBAP1, ubiquitin associ 35.8 49 0.0017 22.4 3.9 28 146-177 35-62 (63)
52 3pmm_A Putative cytoplasmic pr 34.3 1.3E+02 0.0044 27.8 8.2 92 89-182 234-342 (382)
53 3k11_A Putative glycosyl hydro 32.9 1.6E+02 0.0056 27.9 8.8 92 89-180 267-372 (445)
54 3pmm_A Putative cytoplasmic pr 30.7 1E+02 0.0036 28.4 6.9 72 162-241 265-342 (382)
No 1
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=100.00 E-value=3.2e-77 Score=570.64 Aligned_cols=315 Identities=38% Similarity=0.734 Sum_probs=282.0
Q ss_pred CccccCCCcchhhhhhhhhHHHHHhhhHHhhcCCCCCcChHHHHHHHHHhccCCCCCCC-CCCCCccccCCCCCCCCCCC
Q 020097 1 MMMYESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKAD-LTNGEFYGFHGSPSSQLHPD 79 (331)
Q Consensus 1 ~~~l~~lp~~~~~~d~~r~~~~y~~l~~L~lL~~~~~~~~~~~~~~i~~~q~~~~~~~~-~~dg~~ggf~~~~~~~~~~~ 79 (331)
+|+|+.||.+|+++|++|+|++||+|++|+|||.++.++++++++||++||+.|.+... .+||||+||.+.. .|+.
T Consensus 30 ~~~l~~lp~~~~~~d~~r~~~~yw~l~~L~lLg~l~~~~~~~~i~wils~Q~~p~~~~~~~~~GGF~g~~~~~---~p~~ 106 (377)
T 1n4q_B 30 QRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLG---IPFN 106 (377)
T ss_dssp HHHHHEECGGGGGGGGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTC---CCCC
T ss_pred HHHhhcCCccccccccchHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHhcCCccccccCCCCCccCCCcccC---CChh
Confidence 36888999999999999999999999999999998778899999999999986643211 1467777777652 2332
Q ss_pred CC----CCccCCCCcHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhccCCCCCCcccccCCccChhHHHHHHHHHHHhC
Q 020097 80 DN----GVLMHNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLE 155 (331)
Q Consensus 80 ~~----~~~~~~~~~l~~Ty~Al~~L~~lg~~~~~~~~~~~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~ 155 (331)
+. ..+++|.+|+.+||+||++|.++|++++.++++++++||+++|++||+|...+.+++.|+|+||||++++.+|+
T Consensus 107 d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~~~~~id~~~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg 186 (377)
T 1n4q_B 107 PSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLN 186 (377)
T ss_dssp SSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCSTTSCHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTT
T ss_pred hhccccccccCCCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhc
Confidence 21 13568899999999999999999998999999999999999999999998764558999999999999999999
Q ss_pred CCCcccHHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCC
Q 020097 156 DWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAAD 235 (331)
Q Consensus 156 ~~~~~~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~d 235 (331)
.++.++++++++||++|||+|||||..|+.|||+++||||+++|.+++..+... ...+++++++||.+|| +
T Consensus 187 ~~~~~~v~ka~~fL~scQn~DGGfGe~p~~ESh~g~T~cAlaaL~llg~~~~~~-------~~~~~~rli~wL~~rQ--~ 257 (377)
T 1n4q_B 187 NWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVF-------SEKELNRIKRWCIMRQ--Q 257 (377)
T ss_dssp CGGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCHHHHS-------CHHHHHHHHHHHHTTB--S
T ss_pred CCChHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCccccc-------chhhHHHHHHHHHhcC--C
Confidence 888889999999999999999999999999999999999999999999875210 0126899999999999 7
Q ss_pred ccccCCCCCCCCcchhhHHHHHHHHhCCCCCCCHHHHHHHHHhccCC-CCCcCCCCCCCCCHHHHHHHHHHHHhcCCCCC
Q 020097 236 GGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQ-YGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGL 314 (331)
Q Consensus 236 GGf~gr~~k~~D~~yt~~~~a~L~lL~~~~~~~~~~~~~~L~~~Q~~-~GGf~~~p~~~~D~~hT~~al~aLsll~~~~~ 314 (331)
|||+|||||.+|+|||||++++|.+|+..+++|.+++++||++||++ +|||+++|++.||++||||+|++|++++++++
T Consensus 258 gGf~GR~nK~~D~CYSfWv~~~l~iL~~~~~~d~~~l~~fil~cQ~~~~GGf~~~p~~~~D~~HT~~~LagLsl~~~~~l 337 (377)
T 1n4q_B 258 NGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGI 337 (377)
T ss_dssp SSBCSSTTSCCCTTHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTTCSBCSSTTSCCBHHHHHHHHHHHHHTTCTTC
T ss_pred CCcCCCCCcchhHHHHHHHHHHHHHhCCccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCCHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999998899999999999999999 99999999999999999999999999999999
Q ss_pred CCCCccccccccc
Q 020097 315 NPLCAELGMTEFS 327 (331)
Q Consensus 315 ~~~~~~~~~~~~~ 327 (331)
.+|||.+|||.+.
T Consensus 338 ~~i~p~~~i~~~~ 350 (377)
T 1n4q_B 338 CKVHPALNVSTRT 350 (377)
T ss_dssp CCEETTTTEEHHH
T ss_pred CCCCCcccCCHHH
Confidence 9999999999654
No 2
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=100.00 E-value=9.2e-78 Score=573.45 Aligned_cols=304 Identities=30% Similarity=0.433 Sum_probs=270.9
Q ss_pred CccccCCCcchhhhhhhhhHHHHHhhhHHhhcCCC--CCcChHHHHHHHHHhccCCCCCCCCCCCCccccCCCCCCCCCC
Q 020097 1 MMMYESLPHHYQYQEINRITLAHFAISGLCLLGAL--DRVDKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHP 78 (331)
Q Consensus 1 ~~~l~~lp~~~~~~d~~r~~~~y~~l~~L~lL~~~--~~~~~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~~~ 78 (331)
+|||+.||++|+++|++|+|++||+|++|+|||++ ...+++++++||++||+ | .++.+|||+|++....|.
T Consensus 14 ~~~L~~Lp~~~~s~D~~R~~l~Yw~l~~L~lLg~~~~~~~~~~~~i~~i~~~q~-~------~~~~~gGF~g~~~~~~~g 86 (390)
T 3dra_B 14 NRCLIGLPSTAQSEDSNKLAIIYFCLHGLQLIQKFQFTNQELIYYRNFIINQFM-I------ENNQIISFRSTHYFQKTN 86 (390)
T ss_dssp HHHHHCCCGGGGGGTTCHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHE-E------ECSSCEEECSSGGGGGSC
T ss_pred HHHHHhCCcchhhcchhhHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHhc-c------ccCCCCCcCCCccCCCCC
Confidence 37899999999999999999999999999999987 34567889999999996 2 234567888876543332
Q ss_pred CCCCCccCCCCcHHHHHHHHHHHHHhCCC-CCcccHHHHHHHHHhccC---C-CCCCcccc----------cCCccChhH
Q 020097 79 DDNGVLMHNGSNLASTYCALAILKAVGYN-FANIDSKSILTSMRNLQQ---H-DGSFMPIH----------FGAEKDLRF 143 (331)
Q Consensus 79 ~~~~~~~~~~~~l~~Ty~Al~~L~~lg~~-~~~~~~~~~~~~l~~~q~---~-dG~f~~~~----------~~~~~d~~~ 143 (331)
+ .++.||+++||+||++|++||++ ++.+||+++++||.++|+ | ||+|.... .++|.|+|+
T Consensus 87 ~-----~~~~~hl~~Ty~Al~~L~ilg~~~~~~vdr~~i~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg~~~~~ge~D~R~ 161 (390)
T 3dra_B 87 Q-----KYDCPNLSSTLFALYNLLILKSPYHTIINRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLRV 161 (390)
T ss_dssp T-----TTSCCBHHHHHHHHHHHHHTTCCGGGTCCHHHHHHHHHHHBCCSSTTTTCBCSEEEEETTTTEEEEESCCCHHH
T ss_pred C-----ccCcccHHHHHHHHHHHHHhCchhhccccHHHHHHHHHHHhCCCCCCCCceeeeccccccccccccCCcchHHH
Confidence 1 14679999999999999999987 688999999999999999 7 89998543 258999999
Q ss_pred HHHHHHHHHHhCCCC-------------cccHHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCcccccc
Q 020097 144 VYCAAAICFLLEDWS-------------GMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVL 210 (331)
Q Consensus 144 ty~al~~l~lL~~~~-------------~~~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~ 210 (331)
+|||++++++|+.+. .++++++++||++||++||||+..|+.|||+++|||||++|.++++..
T Consensus 162 ~YcA~~i~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~~p~~EsH~G~TfCalaaL~lL~~~~---- 237 (390)
T 3dra_B 162 CYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLKLLNYPL---- 237 (390)
T ss_dssp HHHHHHHHHHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTCCG----
T ss_pred HHHHHHHHHHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCCCCCcccccchhHHHHHHHHHhCccc----
Confidence 999999999999876 688999999999999999999999999999999999999999999863
Q ss_pred ccCCCCCCCCHHHHHHHHHhcCC----------------------------CCccccCCCCCCCCcchhhHHHHHHHHhC
Q 020097 211 SKNTSSSIIDLPLLLSWCLQRQA----------------------------ADGGFQGRANKPSDTCYAFWIGSVLRMLG 262 (331)
Q Consensus 211 ~~~~~~~~~~~~~~~~wL~~~Q~----------------------------~dGGf~gr~~k~~D~~yt~~~~a~L~lL~ 262 (331)
.+++++++||.+||. ++|||+|||||.+|+|||||++++|.||+
T Consensus 238 --------~d~~~l~~WL~~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~nKl~D~CYS~Wv~~sL~iL~ 309 (390)
T 3dra_B 238 --------EKLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWCTGSLYNID 309 (390)
T ss_dssp --------GGCHHHHHHHHTTBCCCCTTTCC------------CCTTCCGGGTTSBBSSTTCCBCTHHHHHHHHHHHHHC
T ss_pred --------ccHHHHHHHHHHcCccccccccccccccccccccccccccccccCCCccCCCCCccchhHHHHHHHHHHHhc
Confidence 467899999999998 47999999999999999999999999999
Q ss_pred C--CCCCCHHHHHHHHHhc-cCC-CCCcCCCCCCCCCHHHHHHHHHHHHhcCC--CCCCCCCcccccccccc
Q 020097 263 G--YNLIDKEALRGFLLTC-QSQ-YGGFGKCPGDLPDLYHSFYGYTAFSLLEE--PGLNPLCAELGMTEFSA 328 (331)
Q Consensus 263 ~--~~~~~~~~~~~~L~~~-Q~~-~GGf~~~p~~~~D~~hT~~al~aLsll~~--~~~~~~~~~~~~~~~~~ 328 (331)
. .+++|.+++++||+.| |+. .|||+++|++.||++|||++|++|+++++ +++.+|||.+|||++..
T Consensus 310 ~~~~~l~d~~~l~~yiL~c~Q~~~~GGf~d~Pg~~pD~yHT~~gLagLsl~~~~~~~l~~vdp~~~ip~~~~ 381 (390)
T 3dra_B 310 VNFIKLVDLNKAEDYLLNKTQNQLFGGFGRDPDSTPDPMHSYLALASLSLWNHEKFALQEINPILTITKESY 381 (390)
T ss_dssp GGGGGGSCHHHHHHHHHHTTBCTTTCSBCSSTTSCCCHHHHHHHHHHHHHHHHHHHTCCCEETTTTEEHHHH
T ss_pred cccccccCHHHHHHHHHHhccCCCCCCcCCCCCCCCchHHHHHHHHHHHHcCCccCCCceeCchhcCCHHHH
Confidence 4 5789999999999887 676 99999999999999999999999999987 79999999999997653
No 3
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=100.00 E-value=2.7e-72 Score=529.87 Aligned_cols=289 Identities=32% Similarity=0.603 Sum_probs=270.5
Q ss_pred cc-ccCCCcchhhhhhhhhHHHHHhhhHHhhcCCCCCcChHHHHHHHHHhccCCCCCCCCCCCCccccCCCCCCCCCCCC
Q 020097 2 MM-YESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPDD 80 (331)
Q Consensus 2 ~~-l~~lp~~~~~~d~~r~~~~y~~l~~L~lL~~~~~~~~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~~~~~ 80 (331)
|+ ++.+|..|.+.|++|+|++||+|++|++||.++.++++++++||++||+ +||||+|..++
T Consensus 29 ~~~~~~~~~~~~~~d~~r~~~~yw~l~~L~lLg~l~~~~r~~~i~~l~s~Q~--------~dGGF~g~~g~--------- 91 (331)
T 3dss_B 29 SYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKSCQH--------ECGGVSASIGH--------- 91 (331)
T ss_dssp HTTSSSCGGGSGGGGGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBC--------TTSCBBSSTTS---------
T ss_pred HhccCCCCccceeccccHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhhhcC--------CCCCcCCCCCC---------
Confidence 45 4678999999999999999999999999999888899999999999996 56777766543
Q ss_pred CCCccCCCCcHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhccCCCCCCcccccCCccChhHHHHHHHHHHHhCCCCcc
Q 020097 81 NGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGM 160 (331)
Q Consensus 81 ~~~~~~~~~~l~~Ty~Al~~L~~lg~~~~~~~~~~~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~ 160 (331)
.+|+.+||+||++|.+++ .++.++++++++||.++|++||+|...++ ++.|+++||||++++.+++.++.+
T Consensus 92 -------~~~l~~Ty~Al~~L~~l~-~~~~id~~k~~~fL~~~Q~~DGsf~~~~~-ge~d~~~ty~Al~~L~llg~~~~~ 162 (331)
T 3dss_B 92 -------DPHLLYTLSAVQILTLYD-SIHVINVDKVVAYVQSLQKEDGSFAGDIW-GEIDTRFSFCAVATLALLGKLDAI 162 (331)
T ss_dssp -------CBCHHHHHHHHHHHHHTT-CGGGSCHHHHHHHHHHTBCTTSCBBSSTT-CCBCHHHHHHHHHHHHHHTCGGGS
T ss_pred -------CccHHHHHHHHHHHHHcC-CccHHHHHHHHHHHhccCCCCCCEecccC-CCCchHHHHHHHHHHHhcCCCCHH
Confidence 379999999999999997 57889999999999999999999986544 799999999999999999988788
Q ss_pred cHHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCccccC
Q 020097 161 DRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQG 240 (331)
Q Consensus 161 ~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~g 240 (331)
+++++++||++||++||||+..|+.|||+++|||||++|.+++..+ .++++++++||.++|.++|||+|
T Consensus 163 ~~~k~v~~L~s~Q~~dGGfg~~pg~esh~~~T~~al~aL~llg~~~-----------~~~~~~~~~wL~~~Q~~dGGf~g 231 (331)
T 3dss_B 163 NVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLH-----------QVNSDLLGWWLCERQLPSGGLNG 231 (331)
T ss_dssp CHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGG-----------GSCHHHHHHHHHTTBCTTSCBCS
T ss_pred HHHHHHHHHHHhCcCCCCcCCCCCCCCcHHHHHHHHHHHHhccccc-----------hhhHHHHHHHHHHhCCCCCCcCC
Confidence 9999999999999999999999999999999999999999999876 57899999999999999999999
Q ss_pred CCCCCCCcchhhHHHHHHHHhCCCCCCCHHHHHHHHHhccCCC-CCcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCc
Q 020097 241 RANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQY-GGFGKCPGDLPDLYHSFYGYTAFSLLEEPGLNPLCA 319 (331)
Q Consensus 241 r~~k~~D~~yt~~~~a~L~lL~~~~~~~~~~~~~~L~~~Q~~~-GGf~~~p~~~~D~~hT~~al~aLsll~~~~~~~~~~ 319 (331)
|++|++|+|||||++++|.++|..+++|++++++||++||+.+ |||+++|+++||++||||+|++|++++++++.+|||
T Consensus 232 r~~k~~D~cys~w~l~~L~llg~~~~~~~~~~~~fil~cQ~~~~GGf~~~pg~~~d~~hT~~~l~~Ls~~g~~~l~~~~p 311 (331)
T 3dss_B 232 RPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPVSP 311 (331)
T ss_dssp STTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTTCCBCSSTTSCCBHHHHHHHHHHHHHTTCTTSCCBCT
T ss_pred CCCCCCcchhHHHHHHHHHHcCCcchhhHHHHHHHHHHhcCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCCc
Confidence 9999999999999999999999988899999999999999996 999999999999999999999999999999999999
Q ss_pred cccccccc
Q 020097 320 ELGMTEFS 327 (331)
Q Consensus 320 ~~~~~~~~ 327 (331)
.+|||++.
T Consensus 312 ~~~~~~~~ 319 (331)
T 3dss_B 312 VFCMPEEV 319 (331)
T ss_dssp TTSSBHHH
T ss_pred cccCCHHH
Confidence 99999764
No 4
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=100.00 E-value=4.3e-71 Score=539.17 Aligned_cols=285 Identities=28% Similarity=0.475 Sum_probs=251.8
Q ss_pred CccccCCCcchhhhhhhhhHHHHHhhhHHhhcCC-CCCcChHHHHHHHHHhccCCCCCCCCCCCCccccCCCCCCCCCCC
Q 020097 1 MMMYESLPHHYQYQEINRITLAHFAISGLCLLGA-LDRVDKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPD 79 (331)
Q Consensus 1 ~~~l~~lp~~~~~~d~~r~~~~y~~l~~L~lL~~-~~~~~~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~~~~ 79 (331)
+|||..||.+|+++|++|+|++||+|++|+|||. .+..+++++++||++||+ +||||+|+...
T Consensus 71 ~~~L~~LP~~y~~~Dasr~wl~Yw~l~aL~LLg~~ld~~~~~~~I~~Ils~Q~--------~dGGFgg~p~~-------- 134 (520)
T 3q7a_B 71 ASSFFQLPGKFVSLDASRPWLVFWTVHSLDLLGVALDQGTKDRVVSTLLHFLS--------PKGGFGGGPAN-------- 134 (520)
T ss_dssp HHHHSCBCGGGGGGGGGHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTBC--------TTSSBCSSCTT--------
T ss_pred HHHhhhCChhhhhcccchHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC--------CCCCCCCCCCC--------
Confidence 3789999999999999999999999999999994 445668899999999997 56777766521
Q ss_pred CCCCccCCCCcHHHHHHHHHHHHHhCCC-----CCccc--HHHHHHHHHhccCCCCCCcccccCCccChhHHHHHHHHHH
Q 020097 80 DNGVLMHNGSNLASTYCALAILKAVGYN-----FANID--SKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICF 152 (331)
Q Consensus 80 ~~~~~~~~~~~l~~Ty~Al~~L~~lg~~-----~~~~~--~~~~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~ 152 (331)
.+.+|+.+||+||++|.+++.. ++.+| ++++++||+++|++||+|....+ ++.|+|+||||++++.
T Consensus 135 ------~~~~hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~slQ~~DGSF~g~~w-Ge~Dir~TY~Al~~L~ 207 (520)
T 3q7a_B 135 ------SQIPHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVVCEG-GEVDVRGTYCLLVVAT 207 (520)
T ss_dssp ------TSCCCHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHHHBCTTSCBBSSTT-CCBCHHHHHHHHHHHH
T ss_pred ------CCCCcHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHHHhCCCCCEecCCC-CCchHHHHHHHHHHHH
Confidence 2348999999999999999975 46788 99999999999999999985444 8999999999999999
Q ss_pred HhCCCCcccHHHHHHHHHhcCCCCCCccc-----------------------CCCCCCChhhHHHHHHHHHHcCCccccc
Q 020097 153 LLEDWSGMDRERAKAYILNCQSYDGGFGL-----------------------TPGSESHGGGTYCAVASLRLMGFIEDNV 209 (331)
Q Consensus 153 lL~~~~~~~~~~~~~~I~~~Q~~dGGFg~-----------------------~p~~esh~~~Ty~AlaaL~llg~~~~~~ 209 (331)
+|+.++..+++++++||++||++|||||. .|+.|||+++|||||++|.+|++.+...
T Consensus 208 lLg~~~~~~v~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp~~~~Pg~EaHgGyTfCalAaL~lL~~l~~~~ 287 (520)
T 3q7a_B 208 LLDIITPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPS 287 (520)
T ss_dssp HHTCCCHHHHTTHHHHHHTTBCTTSSBCSCEEEEC------------CCSEEEECSCCCHHHHHHHHHHHHHHHTSCCTT
T ss_pred HcCCCChHHHHHHHHHHHHhcCCCCCccCccccccccccccccccccccccCCCCCccchhHHHHHHHHHHHhccccccc
Confidence 99988888899999999999999999999 6899999999999999999999864100
Q ss_pred cccCCCCCCCCHHHHHHHHHhcCC---CCccccCCCCCCCCcchhhHHHHHHHHhCCC----------------------
Q 020097 210 LSKNTSSSIIDLPLLLSWCLQRQA---ADGGFQGRANKPSDTCYAFWIGSVLRMLGGY---------------------- 264 (331)
Q Consensus 210 ~~~~~~~~~~~~~~~~~wL~~~Q~---~dGGf~gr~~k~~D~~yt~~~~a~L~lL~~~---------------------- 264 (331)
....+|.+++++||.+||. ++|||+||+||.+|+||+||++++|.+|+..
T Consensus 288 -----~~~~~d~~~l~~WL~~RQ~~~~e~GGF~GR~NKlvD~CYSfWvggsl~iL~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (520)
T 3q7a_B 288 -----FPLSIDANAALRWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAPVAEELVRREKSRKVKKSRIEVFEEEKE 362 (520)
T ss_dssp -----CSCCCCHHHHHHHHHHTBCCGGGTTCBBSSTTSCBCTTHHHHTGGGHHHHHHHHHHHHHHHC-------------
T ss_pred -----cccccCHHHHHHHHHHhCCcccCCCcccCCCCCCCchhhhhHHHHHHHHHHHHhhcccccccccccccccccccc
Confidence 0125789999999999997 4699999999999999999999999998752
Q ss_pred ----------CCCCHHHHHHHHH-hccCCC---CCcCCCCCCCCCHHHHHHHHHHHHhcCCCC
Q 020097 265 ----------NLIDKEALRGFLL-TCQSQY---GGFGKCPGDLPDLYHSFYGYTAFSLLEEPG 313 (331)
Q Consensus 265 ----------~~~~~~~~~~~L~-~~Q~~~---GGf~~~p~~~~D~~hT~~al~aLsll~~~~ 313 (331)
.++|.+++++||+ .||+.. |||+++|++.||+|||||+|++||++++..
T Consensus 363 ~~w~~~~~~~~l~d~~~L~~yIL~~~Q~~~~~~GGf~DkPg~~pD~yHT~y~LaGLSl~qh~~ 425 (520)
T 3q7a_B 363 GDWEDVPPIPPIFNRVALQEFTLVAAQQDPGSTGGLRDKPGKRPDQYHTCNNLSGLSIAQHKM 425 (520)
T ss_dssp --------CCCSSCHHHHHHHHHHTTBCCTTSSCCBCSSTTSCCCHHHHHHHHHHHHHHHSCE
T ss_pred cccccccccccccCHHHHHHHHHHHccCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCC
Confidence 3589999999997 799997 999999999999999999999999998764
No 5
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=100.00 E-value=2.9e-66 Score=503.61 Aligned_cols=289 Identities=31% Similarity=0.545 Sum_probs=263.0
Q ss_pred ccccCCCcchhhhhhhhhHHHHHhhhHHhhcCCC-CCcChHHHHHHHHHhccCCCCCCCCCCCCccccCCCCCCCCCCCC
Q 020097 2 MMYESLPHHYQYQEINRITLAHFAISGLCLLGAL-DRVDKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPDD 80 (331)
Q Consensus 2 ~~l~~lp~~~~~~d~~r~~~~y~~l~~L~lL~~~-~~~~~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~~~~~ 80 (331)
+|++.+|..|++.|++|+|++||+|++|++||.. +....+++++||+++|+ +||||+||+...
T Consensus 84 ~~lq~~~gg~~a~D~~r~~l~y~~l~aL~lLg~~~~~~~~~r~v~~l~s~Q~--------~dGGf~g~~~~~-------- 147 (437)
T 2h6f_B 84 RGLRQLTDAYECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQS--------PEGGFGGGPGQY-------- 147 (437)
T ss_dssp HHTTEECGGGGGGTTCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHBC--------TTSSBBSSTTCC--------
T ss_pred HcCCCCCCCcccccCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCC--------CCCCcCCccCCC--------
Confidence 5677899999999999999999999999999964 33457889999999997 578888886533
Q ss_pred CCCccCCCCcHHHHHHHHHHHHHhCCC--CCcccHHHHHHHHHhccCCCCCCcccccCCccChhHHHHHHHHHHHhCCCC
Q 020097 81 NGVLMHNGSNLASTYCALAILKAVGYN--FANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWS 158 (331)
Q Consensus 81 ~~~~~~~~~~l~~Ty~Al~~L~~lg~~--~~~~~~~~~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~ 158 (331)
+|+..||+||++|.++|.. ++.++++++++||+++|++||||...+ +++.|+++||||++++.+++..+
T Consensus 148 --------~~i~~T~~Al~aL~~lg~~~~~~~i~i~kav~~L~s~Q~~DGsf~~~~-~Ge~d~~~ty~A~~~L~llg~~~ 218 (437)
T 2h6f_B 148 --------PHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHV-GGEVDVRSAYCAASVASLTNIIT 218 (437)
T ss_dssp --------BCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSST-TCCBSHHHHHHHHHHHHHTTCCC
T ss_pred --------cchhHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhCCCCCCeeecC-CCCccchhHHHHHHHHHHhCCCC
Confidence 6999999999999999975 577889999999999999999998644 48999999999999999999877
Q ss_pred cccHHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCC-CCcc
Q 020097 159 GMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQA-ADGG 237 (331)
Q Consensus 159 ~~~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~-~dGG 237 (331)
...++++++||++||++|||||..|+.|||+++|||||++|.++|+.+ .++++++++||.+||. ++||
T Consensus 219 ~~~v~k~~~~L~s~Q~~DGGwg~~pg~eSh~~~T~~Al~aL~~lg~~~-----------~~~~~rl~~wL~~rQ~~~~GG 287 (437)
T 2h6f_B 219 PDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRER-----------SLNLKSLLQWVTSRQMRFEGG 287 (437)
T ss_dssp TTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGG-----------GSCHHHHHHHHHHTBCTTTCS
T ss_pred hHHHHHHHHHHHHccCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCCC-----------cccHHHHHHHHHhcCCCCCCC
Confidence 778899999999999999999999999999999999999999999876 5789999999999999 7999
Q ss_pred ccCCCCCCCCcchhhHHHHHHHHhCCC-------------CCCCHHHHHHHHHh-ccCCCCCcCCCCCCCCCHHHHHHHH
Q 020097 238 FQGRANKPSDTCYAFWIGSVLRMLGGY-------------NLIDKEALRGFLLT-CQSQYGGFGKCPGDLPDLYHSFYGY 303 (331)
Q Consensus 238 f~gr~~k~~D~~yt~~~~a~L~lL~~~-------------~~~~~~~~~~~L~~-~Q~~~GGf~~~p~~~~D~~hT~~al 303 (331)
|+|||+|.+|+|||||++++|.+|+.. .++|.+++++||+. ||+.+|||+++|++.||++||||+|
T Consensus 288 f~gRp~K~~D~cYSfw~~a~L~lL~~~~~~~~~~~~~~~~~l~d~~~l~~yIL~~~Q~~~GGf~d~Pg~~~D~yHT~y~L 367 (437)
T 2h6f_B 288 FQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCL 367 (437)
T ss_dssp BBSSTTSCBCTTHHHHTTTHHHHHHHHHHHTTCTTCCSSCCSSCHHHHHHHHHHHSBCTTSCBCSSTTSCCCHHHHHHHH
T ss_pred ccCCCCCccchHHHHHHHHHHHHHhhhhhcccccccccccccCCHHHHHHHHHHHccCCCCCccCCCCCCCCHHHHHHHH
Confidence 999999999999999999999999742 26899999999976 8999999999999999999999999
Q ss_pred HHHHhcCC----------------CCCCCCCcccccccc
Q 020097 304 TAFSLLEE----------------PGLNPLCAELGMTEF 326 (331)
Q Consensus 304 ~aLsll~~----------------~~~~~~~~~~~~~~~ 326 (331)
++|+++++ ..+.+|||.+|||..
T Consensus 368 ~gLsl~~~~~~~~~~~~~~~~~~~~~l~~i~p~~~i~~~ 406 (437)
T 2h6f_B 368 SGLSIAQHFGSGAMLHDVVLGVPENALQPTHPVYNIGPD 406 (437)
T ss_dssp HHHHHHHEEEETTEEEECCCSSGGGCCCCCCTTTSSCHH
T ss_pred HHHHHhccccccccccccccCCcccCccccCCcccCCHH
Confidence 99999974 579999999999953
No 6
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=100.00 E-value=9.7e-45 Score=341.87 Aligned_cols=238 Identities=21% Similarity=0.363 Sum_probs=215.7
Q ss_pred cChHHHHHHHHHhccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCCCcHHHHHHHHHHHHHhCCCCCcccHHHHH
Q 020097 38 VDKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSIL 117 (331)
Q Consensus 38 ~~~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~~~~~~~~~~~~~~~l~~Ty~Al~~L~~lg~~~~~~~~~~~~ 117 (331)
.++++-++|+.++...+. . ..|. ..|.+.++.||+++.+|.+|| +++.+++++++
T Consensus 18 l~~~~h~~y~~~~~~~~~--------~-~~~~---------------~~d~~r~~~~yw~l~~L~lLg-~l~~~~r~~~i 72 (331)
T 3dss_B 18 LLLEKHADYIASYGSKKD--------D-YEYC---------------MSEYLRMSGVYWGLTVMDLMG-QLHRMNKEEIL 72 (331)
T ss_dssp CCHHHHHHHHHHTTSSSC--------G-GGSG---------------GGGGGHHHHHHHHHHHHHHTT-CGGGSCHHHHH
T ss_pred hhHHHHHHHHHHhccCCC--------C-ccce---------------eccccHHHHHHHHHHHHHHhC-CCchhhHHHHH
Confidence 578999999998743110 0 0111 235679999999999999999 57788999999
Q ss_pred HHHHhccCCCCCCcccccCCccChhHHHHHHHHHHHhCCCCcccHHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHH
Q 020097 118 TSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVA 197 (331)
Q Consensus 118 ~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~Ala 197 (331)
+||+++|++||||...+ +.++++..||+|+.+|.+++.++.++++++++||.++|++||||++.+.+|+|+..||||++
T Consensus 73 ~~l~s~Q~~dGGF~g~~-g~~~~l~~Ty~Al~~L~~l~~~~~id~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~~ty~Al~ 151 (331)
T 3dss_B 73 VFIKSCQHECGGVSASI-GHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVA 151 (331)
T ss_dssp HHHHHTBCTTSCBBSST-TSCBCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHH
T ss_pred HHHhhhcCCCCCcCCCC-CCCccHHHHHHHHHHHHHcCCccHHHHHHHHHHHhccCCCCCCEecccCCCCchHHHHHHHH
Confidence 99999999999998754 57899999999999999999888889999999999999999999999999999999999999
Q ss_pred HHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCccccCCCCCCCCcchhhHHHHHHHHhCCCCCCCHHHHHHHHH
Q 020097 198 SLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLL 277 (331)
Q Consensus 198 aL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~~yt~~~~a~L~lL~~~~~~~~~~~~~~L~ 277 (331)
+|.++|..+ .++++++++||+++|++||||.++|++++|++||||++++|.+++..+.++.+++++||.
T Consensus 152 ~L~llg~~~-----------~~~~~k~v~~L~s~Q~~dGGfg~~pg~esh~~~T~~al~aL~llg~~~~~~~~~~~~wL~ 220 (331)
T 3dss_B 152 TLALLGKLD-----------AINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLC 220 (331)
T ss_dssp HHHHHTCGG-----------GSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHH
T ss_pred HHHhcCCCC-----------HHHHHHHHHHHHHhCcCCCCcCCCCCCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHH
Confidence 999999865 578999999999999999999999999999999999999999999888889999999999
Q ss_pred hccCCCCCcCCCCCCCCCHHHHHHHHHHHHhcCCC
Q 020097 278 TCQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEP 312 (331)
Q Consensus 278 ~~Q~~~GGf~~~p~~~~D~~hT~~al~aLsll~~~ 312 (331)
++|+++|||+++|++.+|++||||++++|+++++.
T Consensus 221 ~~Q~~dGGf~gr~~k~~D~cys~w~l~~L~llg~~ 255 (331)
T 3dss_B 221 ERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRL 255 (331)
T ss_dssp TTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCG
T ss_pred HhCCCCCCcCCCCCCCCcchhHHHHHHHHHHcCCc
Confidence 99999999999999999999999999999999975
No 7
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=100.00 E-value=1.7e-43 Score=343.71 Aligned_cols=237 Identities=19% Similarity=0.204 Sum_probs=214.7
Q ss_pred CcChHHHHHHHHHh-ccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCCCcHHHHHHHHHHHHHhCCCCCcccHHH
Q 020097 37 RVDKDAVSDWVLSL-QAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKS 115 (331)
Q Consensus 37 ~~~~~~~~~~i~~~-q~~~~~~~~~~dg~~ggf~~~~~~~~~~~~~~~~~~~~~~l~~Ty~Al~~L~~lg~~~~~~~~~~ 115 (331)
..++++.++||.+| |+ .+|+|+.|..+ +.+.+|+++.+|.+||..++..++++
T Consensus 72 ~l~~~~hi~~l~~~lq~--------~~gg~~a~D~~------------------r~~l~y~~l~aL~lLg~~~~~~~~~r 125 (437)
T 2h6f_B 72 VLQREKHFHYLKRGLRQ--------LTDAYECLDAS------------------RPWLCYWILHSLELLDEPIPQIVATD 125 (437)
T ss_dssp CCCHHHHHHHHHHHTTE--------ECGGGGGGTTC------------------HHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred cccHHHHHHHHHHcCCC--------CCCCcccccCC------------------CccHHHHHHHHHHHhCCCCCHHHHHH
Confidence 35789999999999 76 46778877653 46779999999999997766667789
Q ss_pred HHHHHHhccCCCCCCcccccCCccChhHHHHHHHHHHHhCCC---CcccHHHHHHHHHhcCCCCCCcccCCCCCCChhhH
Q 020097 116 ILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDW---SGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGT 192 (331)
Q Consensus 116 ~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~---~~~~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~T 192 (331)
+++||.++|++||||...++ ++.++..||+|+.+|.+++.. +.++++++++||++||++||||++.+++|+|...|
T Consensus 126 ~v~~l~s~Q~~dGGf~g~~~-~~~~i~~T~~Al~aL~~lg~~~~~~~i~i~kav~~L~s~Q~~DGsf~~~~~Ge~d~~~t 204 (437)
T 2h6f_B 126 VCQFLELCQSPEGGFGGGPG-QYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSA 204 (437)
T ss_dssp HHHHHHHHBCTTSSBBSSTT-CCBCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSSTTCCBSHHHH
T ss_pred HHHHHHHhCCCCCCcCCccC-CCcchhHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhCCCCCCeeecCCCCccchhH
Confidence 99999999999999987654 778999999999999999853 56789999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCccccCCCCCCCCcchhhHHHHHHHHhCCCCCCCHHHH
Q 020097 193 YCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEAL 272 (331)
Q Consensus 193 y~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~~yt~~~~a~L~lL~~~~~~~~~~~ 272 (331)
|||+++|.++|..+ ...++++++||+++|++||||+++|++++|++||||++++|.++|..+.++.+++
T Consensus 205 y~A~~~L~llg~~~-----------~~~v~k~~~~L~s~Q~~DGGwg~~pg~eSh~~~T~~Al~aL~~lg~~~~~~~~rl 273 (437)
T 2h6f_B 205 YCAASVASLTNIIT-----------PDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSL 273 (437)
T ss_dssp HHHHHHHHHTTCCC-----------TTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHH
T ss_pred HHHHHHHHHhCCCC-----------hHHHHHHHHHHHHccCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCCCcccHHHH
Confidence 99999999999764 3457789999999999999999999999999999999999999998888899999
Q ss_pred HHHHHhccC-CCCCcCCCCCCCCCHHHHHHHHHHHHhcCC
Q 020097 273 RGFLLTCQS-QYGGFGKCPGDLPDLYHSFYGYTAFSLLEE 311 (331)
Q Consensus 273 ~~~L~~~Q~-~~GGf~~~p~~~~D~~hT~~al~aLsll~~ 311 (331)
++||.++|. .+|||.++|++.+|++||||++++|++++.
T Consensus 274 ~~wL~~rQ~~~~GGf~gRp~K~~D~cYSfw~~a~L~lL~~ 313 (437)
T 2h6f_B 274 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 313 (437)
T ss_dssp HHHHHHTBCTTTCSBBSSTTSCBCTTHHHHTTTHHHHHHH
T ss_pred HHHHHhcCCCCCCCccCCCCCccchHHHHHHHHHHHHHhh
Confidence 999999999 699999999999999999999999999975
No 8
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=100.00 E-value=2.7e-37 Score=301.38 Aligned_cols=238 Identities=18% Similarity=0.208 Sum_probs=207.8
Q ss_pred cChHHHHHHHHHhccC-CCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCCCcHHHHHHHHHHHHHhCCCCCcccHHHH
Q 020097 38 VDKDAVSDWVLSLQAH-PSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSI 116 (331)
Q Consensus 38 ~~~~~~~~~i~~~q~~-~~~~~~~~dg~~ggf~~~~~~~~~~~~~~~~~~~~~~l~~Ty~Al~~L~~lg~~~~~~~~~~~ 116 (331)
..+++-++|+.++... | ..|. ..|.+.++..|++|.+|.+||..++..+++++
T Consensus 61 L~~~~Hi~yl~~~L~~LP-----------~~y~---------------~~Dasr~wl~Yw~l~aL~LLg~~ld~~~~~~~ 114 (520)
T 3q7a_B 61 LRKQEHTQFLASSFFQLP-----------GKFV---------------SLDASRPWLVFWTVHSLDLLGVALDQGTKDRV 114 (520)
T ss_dssp CCHHHHHHHHHHHHSCBC-----------GGGG---------------GGGGGHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHhhhCC-----------hhhh---------------hcccchHHHHHHHHHHHHHhCCCCChHHHHHH
Confidence 5688888998887531 1 1121 24678999999999999999988877778999
Q ss_pred HHHHHhccCCCCCCcccc-cCCccChhHHHHHHHHHHHhCCC------Cccc--HHHHHHHHHhcCCCCCCcccCCCCCC
Q 020097 117 LTSMRNLQQHDGSFMPIH-FGAEKDLRFVYCAAAICFLLEDW------SGMD--RERAKAYILNCQSYDGGFGLTPGSES 187 (331)
Q Consensus 117 ~~~l~~~q~~dG~f~~~~-~~~~~d~~~ty~al~~l~lL~~~------~~~~--~~~~~~~I~~~Q~~dGGFg~~p~~es 187 (331)
++||.++|+++|||...+ .+..+++..||+|+.+|.+++.. +.++ ++++++||.++|++||+|.+.+++|.
T Consensus 115 I~~Ils~Q~~dGGFgg~p~~~~~~hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~slQ~~DGSF~g~~wGe~ 194 (520)
T 3q7a_B 115 VSTLLHFLSPKGGFGGGPANSQIPHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVVCEGGEV 194 (520)
T ss_dssp HHHHHTTBCTTSSBCSSCTTTSCCCHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHHHBCTTSCBBSSTTCCB
T ss_pred HHHHHHHcCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHHHhCCCCCEecCCCCCc
Confidence 999999999999998654 14678999999999999999853 2456 88999999999999999999888899
Q ss_pred ChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCccccC-----------------------CCCC
Q 020097 188 HGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQG-----------------------RANK 244 (331)
Q Consensus 188 h~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~g-----------------------r~~k 244 (331)
++..||||+++|.++|..+ ..+++++++||+++|+.||||.. .|+.
T Consensus 195 Dir~TY~Al~~L~lLg~~~-----------~~~v~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp~~~~Pg~ 263 (520)
T 3q7a_B 195 DVRGTYCLLVVATLLDIIT-----------PELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMA 263 (520)
T ss_dssp CHHHHHHHHHHHHHHTCCC-----------HHHHTTHHHHHHTTBCTTSSBCSCEEEEC------------CCSEEEECS
T ss_pred hHHHHHHHHHHHHHcCCCC-----------hHHHHHHHHHHHHhcCCCCCccCccccccccccccccccccccccCCCCC
Confidence 9999999999999999854 34678899999999999999999 6789
Q ss_pred CCCcchhhHHHHHHHHhCCC------CCCCHHHHHHHHHhccC---CCCCcCCCCCCCCCHHHHHHHHHHHHhcCCC
Q 020097 245 PSDTCYAFWIGSVLRMLGGY------NLIDKEALRGFLLTCQS---QYGGFGKCPGDLPDLYHSFYGYTAFSLLEEP 312 (331)
Q Consensus 245 ~~D~~yt~~~~a~L~lL~~~------~~~~~~~~~~~L~~~Q~---~~GGf~~~p~~~~D~~hT~~al~aLsll~~~ 312 (331)
|++..||||++++|++|+.. +.+|.+++++||..+|. ++|||.++|++.+|.+|+||..++|.+++..
T Consensus 264 EaHgGyTfCalAaL~lL~~l~~~~~~~~~d~~~l~~WL~~RQ~~~~e~GGF~GR~NKlvD~CYSfWvggsl~iL~~~ 340 (520)
T 3q7a_B 264 EAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAPVAEEL 340 (520)
T ss_dssp CCCHHHHHHHHHHHHHHHTSCCTTCSCCCCHHHHHHHHHHTBCCGGGTTCBBSSTTSCBCTTHHHHTGGGHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhccccccccccccCHHHHHHHHHHhCCcccCCCcccCCCCCCCchhhhhHHHHHHHHHHHH
Confidence 99999999999999999985 46899999999999997 3699999999999999999999999998763
No 9
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=100.00 E-value=3.2e-36 Score=287.54 Aligned_cols=235 Identities=19% Similarity=0.229 Sum_probs=204.9
Q ss_pred cChHHHHHHHHHhccC-CCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCCCcHHHHHHHHHHHHHhCCCCCcccHHHH
Q 020097 38 VDKDAVSDWVLSLQAH-PSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSI 116 (331)
Q Consensus 38 ~~~~~~~~~i~~~q~~-~~~~~~~~dg~~ggf~~~~~~~~~~~~~~~~~~~~~~l~~Ty~Al~~L~~lg~~~~~~~~~~~ 116 (331)
..+++-++|+.++... | ..|.. .|.+.++.+|++|.+|.+||. ++.++++++
T Consensus 20 l~~~~H~~y~~~~l~~lp-----------~~~~~---------------~d~~r~~~~yw~l~~L~lLg~-l~~~~~~~~ 72 (377)
T 1n4q_B 20 FLRDRHVRFFQRCLQVLP-----------ERYSS---------------LETSRLTIAFFALSGLDMLDS-LDVVNKDDI 72 (377)
T ss_dssp CCHHHHHHHHHHHHHEEC-----------GGGGG---------------GGGGHHHHHHHHHHHHHHTTC-GGGSCHHHH
T ss_pred cCHHHHHHHHHHHhhcCC-----------ccccc---------------cccchHHHHHHHHHHHHHhCC-CCccCHHHH
Confidence 4689999999998852 2 12322 345799999999999999994 556679999
Q ss_pred HHHHHhccC---------CCCCCcccccC----------------CccChhHHHHHHHHHHHhC-CCCcccHHHHHHHHH
Q 020097 117 LTSMRNLQQ---------HDGSFMPIHFG----------------AEKDLRFVYCAAAICFLLE-DWSGMDRERAKAYIL 170 (331)
Q Consensus 117 ~~~l~~~q~---------~dG~f~~~~~~----------------~~~d~~~ty~al~~l~lL~-~~~~~~~~~~~~~I~ 170 (331)
++||.++|+ ++|||...+.. ..+++..||+|+.+|.+++ ..+.++++++++||.
T Consensus 73 i~wils~Q~~p~~~~~~~~~GGF~g~~~~~~p~~d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~~~~~id~~~~~~fL~ 152 (377)
T 1n4q_B 73 IEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLR 152 (377)
T ss_dssp HHHHHTTEECCCTTCTTGGGCEECSSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCSTTSCHHHHHHHHH
T ss_pred HHHHHHhcCCccccccCCCCCccCCCcccCCChhhhccccccccCCCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 999999998 58999765321 1367999999999999998 456688999999999
Q ss_pred hcCCCCCCcccC-CCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCccccCCCCCCCCcc
Q 020097 171 NCQSYDGGFGLT-PGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTC 249 (331)
Q Consensus 171 ~~Q~~dGGFg~~-p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~~ 249 (331)
++|++||+|.+. ..+|.++..||||+++|.++|..+ .++++++++||+++|+.||||...|+.+++..
T Consensus 153 ~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~~~-----------~~~v~ka~~fL~scQn~DGGfGe~p~~ESh~g 221 (377)
T 1n4q_B 153 ALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWS-----------GMDMKKAISYIRRSMSYDNGLAQGAGLESHGG 221 (377)
T ss_dssp HHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCGG-----------GSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHH
T ss_pred HhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcCCC-----------hHHHHHHHHHHHHhcCCCCCCCCCCCCCCchh
Confidence 999999999987 578999999999999999999854 57899999999999999999999999999999
Q ss_pred hhhHHHHHHHHhCCCCCC----CHHHHHHHHHhccCCCCCcCCCCCCCCCHHHHHHHHHHHHhcCCC
Q 020097 250 YAFWIGSVLRMLGGYNLI----DKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEP 312 (331)
Q Consensus 250 yt~~~~a~L~lL~~~~~~----~~~~~~~~L~~~Q~~~GGf~~~p~~~~D~~hT~~al~aLsll~~~ 312 (331)
+|||++++|.+++..+.+ +++++++||.+.| +|||.++|++.+|.+||||.+++|.+++..
T Consensus 222 ~T~cAlaaL~llg~~~~~~~~~~~~rli~wL~~rQ--~gGf~GR~nK~~D~CYSfWv~~~l~iL~~~ 286 (377)
T 1n4q_B 222 STFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIF 286 (377)
T ss_dssp HHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB--SSSBCSSTTSCCCTTHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHhcCcccccchhhHHHHHHHHHhcC--CCCcCCCCCcchhHHHHHHHHHHHHHhCCc
Confidence 999999999999975443 6899999999999 899999999999999999999999999875
No 10
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=100.00 E-value=6.5e-36 Score=285.08 Aligned_cols=248 Identities=20% Similarity=0.225 Sum_probs=205.0
Q ss_pred cChHHHHHHHHHhccC-CCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCCCcHHHHHHHHHHHHHhCCC-CCcccHHH
Q 020097 38 VDKDAVSDWVLSLQAH-PSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYN-FANIDSKS 115 (331)
Q Consensus 38 ~~~~~~~~~i~~~q~~-~~~~~~~~dg~~ggf~~~~~~~~~~~~~~~~~~~~~~l~~Ty~Al~~L~~lg~~-~~~~~~~~ 115 (331)
.++++-++|+.++... | ..|. ..|.+.++.+||+|.+|.+||.. +...++++
T Consensus 4 l~~~kHiky~~~~L~~Lp-----------~~~~---------------s~D~~R~~l~Yw~l~~L~lLg~~~~~~~~~~~ 57 (390)
T 3dra_B 4 LLINKHEKFFNRCLIGLP-----------STAQ---------------SEDSNKLAIIYFCLHGLQLIQKFQFTNQELIY 57 (390)
T ss_dssp CCHHHHHHHHHHHHHCCC-----------GGGG---------------GGTTCHHHHHHHHHHHHHHTTCCCCCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCC-----------cchh---------------hcchhhHHHHHHHHHHHHHhCCCccchHHHHH
Confidence 5789999999987641 1 1121 24668999999999999999964 34556889
Q ss_pred HHHHHHhccCCC----CCCcccc----cC---CccChhHHHHHHHHHHHhCCC--CcccHHHHHHHHHhcCC---C-CCC
Q 020097 116 ILTSMRNLQQHD----GSFMPIH----FG---AEKDLRFVYCAAAICFLLEDW--SGMDRERAKAYILNCQS---Y-DGG 178 (331)
Q Consensus 116 ~~~~l~~~q~~d----G~f~~~~----~~---~~~d~~~ty~al~~l~lL~~~--~~~~~~~~~~~I~~~Q~---~-dGG 178 (331)
+++||.++|.++ |||...+ .+ ..+++..||+|+.+|.+|+.. +.++++++.+||.+||+ + |||
T Consensus 58 ~i~~i~~~q~~~~~~~gGF~g~~~~~~~g~~~~~~hl~~Ty~Al~~L~ilg~~~~~~vdr~~i~~~l~~lQ~~~~~~dGs 137 (390)
T 3dra_B 58 YRNFIINQFMIENNQIISFRSTHYFQKTNQKYDCPNLSSTLFALYNLLILKSPYHTIINRKKIMNFLCKCQVKDGINKGG 137 (390)
T ss_dssp HHHHHHHHHEEECSSCEEECSSGGGGGSCTTTSCCBHHHHHHHHHHHHHTTCCGGGTCCHHHHHHHHHHHBCCSSTTTTC
T ss_pred HHHHHHHHhccccCCCCCcCCCccCCCCCCccCcccHHHHHHHHHHHHHhCchhhccccHHHHHHHHHHHhCCCCCCCCc
Confidence 999999997653 8998664 12 357999999999999999874 66899999999999999 7 899
Q ss_pred cccCC-----------CCCCChhhHHHHHHHHHHcCCccccccc--cCCCCCCCCHHHHHHHHHhcCCCCccccCCCCCC
Q 020097 179 FGLTP-----------GSESHGGGTYCAVASLRLMGFIEDNVLS--KNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKP 245 (331)
Q Consensus 179 Fg~~p-----------~~esh~~~Ty~AlaaL~llg~~~~~~~~--~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~ 245 (331)
|+..+ ++|.|++.||||++++.+++......+. .......++++++++||.++|+.||||.+.|+.+
T Consensus 138 F~~~~~~~~~dg~~~~~ge~D~R~~YcA~~i~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~~p~~E 217 (390)
T 3dra_B 138 FVPTLYYNEENGDYKQYGEPDLRVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDE 217 (390)
T ss_dssp BCSEEEEETTTTEEEEESCCCHHHHHHHHHHHHHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCSSTTSC
T ss_pred eeeeccccccccccccCCcchHHHHHHHHHHHHHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCCCCCcc
Confidence 99654 6899999999999999999876410000 0000114789999999999999999999999999
Q ss_pred CCcchhhHHHHHHHHhCCCCCCCHHHHHHHHHhccC----------------------------CCCCcCCCCCCCCCHH
Q 020097 246 SDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQS----------------------------QYGGFGKCPGDLPDLY 297 (331)
Q Consensus 246 ~D~~yt~~~~a~L~lL~~~~~~~~~~~~~~L~~~Q~----------------------------~~GGf~~~p~~~~D~~ 297 (331)
++..||||++++|++|+.. +.|.+++++||..+|. ++|||.++|++.+|.+
T Consensus 218 sH~G~TfCalaaL~lL~~~-~~d~~~l~~WL~~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~nKl~D~C 296 (390)
T 3dra_B 218 SHLGFTFCAIASLKLLNYP-LEKLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTC 296 (390)
T ss_dssp CCHHHHHHHHHHHHHTTCC-GGGCHHHHHHHHTTBCCCCTTTCC------------CCTTCCGGGTTSBBSSTTCCBCTH
T ss_pred cccchhHHHHHHHHHhCcc-cccHHHHHHHHHHcCccccccccccccccccccccccccccccccCCCccCCCCCccchh
Confidence 9999999999999999976 5789999999999997 4799999999999999
Q ss_pred HHHHHHHHHHhcCCC
Q 020097 298 HSFYGYTAFSLLEEP 312 (331)
Q Consensus 298 hT~~al~aLsll~~~ 312 (331)
+|||.+++|.+++..
T Consensus 297 YS~Wv~~sL~iL~~~ 311 (390)
T 3dra_B 297 YSWWCTGSLYNIDVN 311 (390)
T ss_dssp HHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999999963
No 11
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.91 E-value=2.6e-23 Score=211.67 Aligned_cols=271 Identities=16% Similarity=0.089 Sum_probs=191.8
Q ss_pred hhhhHHHHHhhhHHhhcCCCC-CcChHHHHHHHHHhccCCCCC--CCCCCCCccccCCCCCCCCCCCCCCCccCCCCcHH
Q 020097 16 INRITLAHFAISGLCLLGALD-RVDKDAVSDWVLSLQAHPSNK--ADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLA 92 (331)
Q Consensus 16 ~~r~~~~y~~l~~L~lL~~~~-~~~~~~~~~~i~~~q~~~~~~--~~~~dg~~ggf~~~~~~~~~~~~~~~~~~~~~~l~ 92 (331)
.+.+|-+.|++.+|..+|... ....+++++||.++|+.+... ....++..||+.-+.. + ...|+++
T Consensus 308 ~s~vwdta~~l~AL~~~G~~~~~~~~~ka~~~L~~~q~~~~g~~~~~~~~~s~GgW~f~~~------~-----~~~p~v~ 376 (631)
T 2sqc_A 308 ISPVWDTGLAVLALRAAGLPADHDRLVKAGEWLLDRQITVPGDWAVKRPNLKPGGFAFQFD------N-----VYYPDVC 376 (631)
T ss_dssp CCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHTCCCSCCGGGGTCTTSCCCCBCSSSS------C-----TTCCBHH
T ss_pred CChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCCCCChhhhcCCCCCCCCccccC------C-----CCCCchH
Confidence 367999999999999999752 234578999999999632100 0001111222211110 0 1137899
Q ss_pred HHHHHHHHHHHhCCCCC---cccHHHHHHHHHhccCCCCCCcccccC------------------CccChhHHHHHHHHH
Q 020097 93 STYCALAILKAVGYNFA---NIDSKSILTSMRNLQQHDGSFMPIHFG------------------AEKDLRFVYCAAAIC 151 (331)
Q Consensus 93 ~Ty~Al~~L~~lg~~~~---~~~~~~~~~~l~~~q~~dG~f~~~~~~------------------~~~d~~~ty~al~~l 151 (331)
.|..++.+|..++..-+ ....+++++||.++|++||+|...... ..+++..|..++.+|
T Consensus 377 dTA~al~AL~~~~~~~~~~~~~~l~~a~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~vl~aL 456 (631)
T 2sqc_A 377 DTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECF 456 (631)
T ss_dssp HHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCccchhHHHHHHHHHHHHhhcCCCCCCCccCCCCccccccccccccCCcccCCCCchHHHHHHHHH
Confidence 99999999999885211 112467999999999999999543110 114566777777777
Q ss_pred HHhCCC-CcccHHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHh
Q 020097 152 FLLEDW-SGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQ 230 (331)
Q Consensus 152 ~lL~~~-~~~~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~ 230 (331)
..++.. ....++++++||+++|++||||.+..+ ..+...|..++.+|..++... ....++++++||++
T Consensus 457 ~~~g~~~~~~~i~rai~~L~~~Q~~DGsw~g~wg-~~~~y~Ta~~l~aL~~~g~~~----------~~~~i~rav~~L~s 525 (631)
T 2sqc_A 457 GSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRWG-VNYLYGTGAVVSALKAVGIDT----------REPYIQKALDWVEQ 525 (631)
T ss_dssp HTTTCCTTSHHHHHHHHHHHHHCCTTSCCCCSSB-SSHHHHHHHHHHHHHHTTCCT----------TSHHHHHHHHHHHH
T ss_pred HhcCCCccHHHHHHHHHHHHHhcCCCCCCCCCCC-CCchHHHHHHHHHHHHhCCcc----------cHHHHHHHHHHHHH
Confidence 777642 234679999999999999999965543 234556667788888877532 13468899999999
Q ss_pred cCCCCccccCCC----------CCCCCcchhhHHHHHHHHhCCCCCCCHHHHHHHHHhccCCCCCcCCCCCCCC------
Q 020097 231 RQAADGGFQGRA----------NKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPGDLP------ 294 (331)
Q Consensus 231 ~Q~~dGGf~gr~----------~k~~D~~yt~~~~a~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~~~p~~~~------ 294 (331)
+|++||||...+ ...+|+..|+|++.+|..++..+....+++++||.++|+++|||...+....
T Consensus 526 ~Q~~DGgWg~~~~sy~~~~~~~~~~s~v~~Ta~ALlaL~~ag~~~~~~i~rav~wL~~~Q~~dGgw~~~~~tg~gf~~~~ 605 (631)
T 2sqc_A 526 HQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDF 605 (631)
T ss_dssp TCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHCCTTSCCCCCSCCEEEETTTE
T ss_pred hCcCCCCcCCccccccccccCCCCCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHHHhccCCCCCcCCCCcccccccccc
Confidence 999999996432 2457889999999999999875444578999999999999999998764321
Q ss_pred ----CHHHHHHHHHHHHh
Q 020097 295 ----DLYHSFYGYTAFSL 308 (331)
Q Consensus 295 ----D~~hT~~al~aLsl 308 (331)
..|.+++.|-||+.
T Consensus 606 yl~y~~y~~~f~l~AL~~ 623 (631)
T 2sqc_A 606 YLGYTMYRHVFPTLALGR 623 (631)
T ss_dssp EEEETTHHHHHHHHHHHH
T ss_pred eeeccchhhHHHHHHHHH
Confidence 45778888888874
No 12
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.89 E-value=6.1e-22 Score=204.14 Aligned_cols=272 Identities=16% Similarity=0.129 Sum_probs=185.3
Q ss_pred hhhHHHHHhhhHHhhcCCCCC----cChHHHHHHHHHhccCCCCC-----CC-CCCCCccccCCCCCCCCCCCCCCCccC
Q 020097 17 NRITLAHFAISGLCLLGALDR----VDKDAVSDWVLSLQAHPSNK-----AD-LTNGEFYGFHGSPSSQLHPDDNGVLMH 86 (331)
Q Consensus 17 ~r~~~~y~~l~~L~lL~~~~~----~~~~~~~~~i~~~q~~~~~~-----~~-~~dg~~ggf~~~~~~~~~~~~~~~~~~ 86 (331)
+.+|-+-|++.+|.-.|.... ...+++++||.++|+..... .. ...|||+ |...+ .
T Consensus 384 s~vwdTalal~AL~~ag~~~~~~~~~~l~ka~~~L~~~Q~~~~~~d~~~~~r~~~~GGW~-f~~~~-------------~ 449 (732)
T 1w6k_A 384 SQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNPPDYQKYYRQMRKGGFS-FSTLD-------------C 449 (732)
T ss_dssp CHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCCCTTGGGGTCCCCTTCCB-SSCTT-------------T
T ss_pred CchHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHHhcccccCCcccccccCCCCCeec-CCCCC-------------C
Confidence 678999999999998875421 12468899999999632100 00 0115553 22111 0
Q ss_pred CCCcHHHHHHHHHHHHHhCC-------CCCcccHHHHHHHHHhccCCCCCCccccc----------------CC----cc
Q 020097 87 NGSNLASTYCALAILKAVGY-------NFANIDSKSILTSMRNLQQHDGSFMPIHF----------------GA----EK 139 (331)
Q Consensus 87 ~~~~l~~Ty~Al~~L~~lg~-------~~~~~~~~~~~~~l~~~q~~dG~f~~~~~----------------~~----~~ 139 (331)
..|++..|..++.+|..++. ....-..+++++||.++|++||+|..... +. .+
T Consensus 450 ~~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s 529 (732)
T 1w6k_A 450 GWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYT 529 (732)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCC
T ss_pred CCCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCC
Confidence 13689999999999998752 12111236789999999999999953211 00 11
Q ss_pred ChhHHHHHHHHHHHhCCC--C------cccHHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccc
Q 020097 140 DLRFVYCAAAICFLLEDW--S------GMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLS 211 (331)
Q Consensus 140 d~~~ty~al~~l~lL~~~--~------~~~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~ 211 (331)
.+..|..++.+|..++.. . ...++++++||+++|++||||++..+ ..+...|++|+.+|..+|......
T Consensus 530 ~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~~Q~~DGsW~g~wg-~~~~Y~T~~al~AL~~aG~~~~~~-- 606 (732)
T 1w6k_A 530 YVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWG-VCFTYGTWFGLEAFACMGQTYRDG-- 606 (732)
T ss_dssp BHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCSSB-SSHHHHHHHHHHHHHHTTCCCBTT--
T ss_pred cchHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhhcCCCCCccCcCC-CccchHHHHHHHHHHHhCCccccc--
Confidence 233455566666666421 1 23578999999999999999988654 234556889999999998753110
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCCCccccCCC----------CCCCCcchhhHHHHHHHHhCCCCCCCHHHHHHHHHhccC
Q 020097 212 KNTSSSIIDLPLLLSWCLQRQAADGGFQGRA----------NKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQS 281 (331)
Q Consensus 212 ~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr~----------~k~~D~~yt~~~~a~L~lL~~~~~~~~~~~~~~L~~~Q~ 281 (331)
.....++++++||+++|++||||.... .+.+|+..|.|++.+|..++..+....+++++||.++|+
T Consensus 607 ----~~~~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y~~~~~s~v~~TAwALlALl~ag~~~~~~i~r~v~wL~~~Q~ 682 (732)
T 1w6k_A 607 ----TACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMAVRHPDIEAQERGVRCLLEKQL 682 (732)
T ss_dssp ----BCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC
T ss_pred ----chhHHHHHHHHHHHHhcccCCCCCCCCccccccccCCCCCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcC
Confidence 001358899999999999999998642 445789999999999988886544457889999999999
Q ss_pred CCCCcCCCCCCC--C-------CHHHHHHHHHHHHhc
Q 020097 282 QYGGFGKCPGDL--P-------DLYHSFYGYTAFSLL 309 (331)
Q Consensus 282 ~~GGf~~~p~~~--~-------D~~hT~~al~aLsll 309 (331)
++|||...+... + +.+-.++.|-||+..
T Consensus 683 ~~Ggf~~~~~~g~f~~~~~i~Y~~y~~~fpl~AL~~y 719 (732)
T 1w6k_A 683 PNGDWPQENIAGVFNKSCAISYTSYRNIFPIWALGRF 719 (732)
T ss_dssp TTSCCCCCSCCEEETTTEEECCTTHHHHHHHHHHHHH
T ss_pred CCCCccCCcccccccchhhhcccchhHHHHHHHHHHH
Confidence 999999765321 1 224455666666643
No 13
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.88 E-value=1e-21 Score=199.97 Aligned_cols=255 Identities=15% Similarity=0.069 Sum_probs=182.1
Q ss_pred HHHHhhhHHhhcCCCCCcChHHHHHHHHHhccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCCCcHHHHHHHHHH
Q 020097 21 LAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAI 100 (331)
Q Consensus 21 ~~y~~l~~L~lL~~~~~~~~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~~~~~~~~~~~~~~~l~~Ty~Al~~ 100 (331)
.+++++.+|..+|..+....++.++.|.+.... .+|| |+..+++ .+.++.|.+++++
T Consensus 264 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~------~~dG---g~~~~~~--------------~s~vwdta~~l~A 320 (631)
T 2sqc_A 264 PWFYALIALKILDMTQHPAFIKGWEGLELYGVE------LDYG---GWMFQAS--------------ISPVWDTGLAVLA 320 (631)
T ss_dssp HHHHHHHHHHHTTCTTSHHHHHHHHGGGGGEEE------CTTS---CEEECSS--------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhceEE------cCCC---ceeeCCC--------------CChHHHHHHHHHH
Confidence 567889999999965333345555666555431 1343 3322221 1579999999999
Q ss_pred HHHhCCCCCcccHHHHHHHHHhccCCC-CCCccc-------------ccCCccChhHHHHHHHHHHHhCCCC----cccH
Q 020097 101 LKAVGYNFANIDSKSILTSMRNLQQHD-GSFMPI-------------HFGAEKDLRFVYCAAAICFLLEDWS----GMDR 162 (331)
Q Consensus 101 L~~lg~~~~~~~~~~~~~~l~~~q~~d-G~f~~~-------------~~~~~~d~~~ty~al~~l~lL~~~~----~~~~ 162 (331)
|..+|...+....+++++||++.|..+ |.|... ...+.+|+..|..++.++..++... ....
T Consensus 321 L~~~G~~~~~~~~~ka~~~L~~~q~~~~g~~~~~~~~~s~GgW~f~~~~~~~p~v~dTA~al~AL~~~~~~~~~~~~~~l 400 (631)
T 2sqc_A 321 LRAAGLPADHDRLVKAGEWLLDRQITVPGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALNTLRLPDERRRRDAM 400 (631)
T ss_dssp HHHTTCCTTCHHHHHHHHHHHHTCCCSCCGGGGTCTTSCCCCBCSSSSCTTCCBHHHHHHHHHHHTTCCCSCHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHHHHHhcCCCCCChhhhcCCCCCCCCccccCCCCCCchHHHHHHHHHHHHcCCCccchhHHHH
Confidence 999997554555789999999998643 433211 0113467888888888888887532 2246
Q ss_pred HHHHHHHHhcCCCCCCcccCCC-------------------CCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHH
Q 020097 163 ERAKAYILNCQSYDGGFGLTPG-------------------SESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPL 223 (331)
Q Consensus 163 ~~~~~~I~~~Q~~dGGFg~~p~-------------------~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~ 223 (331)
+++++||+++|++||||+..+. +.+++..|..++.+|..++... ....+++
T Consensus 401 ~~a~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~vl~aL~~~g~~~----------~~~~i~r 470 (631)
T 2sqc_A 401 TKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYDD----------AWKVIRR 470 (631)
T ss_dssp HHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTCCT----------TSHHHHH
T ss_pred HHHHHHHHhhcCCCCCCCccCCCCccccccccccccCCcccCCCCchHHHHHHHHHHhcCCCc----------cHHHHHH
Confidence 7899999999999999976421 1266778999999999887532 1345789
Q ss_pred HHHHHHhcCCCCccccCCCCCCCCcchhhHHHHHH---HHhCCCC-CCCHHHHHHHHHhccCCCCCcCCCC---------
Q 020097 224 LLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVL---RMLGGYN-LIDKEALRGFLLTCQSQYGGFGKCP--------- 290 (331)
Q Consensus 224 ~~~wL~~~Q~~dGGf~gr~~k~~D~~yt~~~~a~L---~lL~~~~-~~~~~~~~~~L~~~Q~~~GGf~~~p--------- 290 (331)
+++||.++|++||||.++.+ ++++|+...++ ..++... ...++++++||+++|++||||+..+
T Consensus 471 ai~~L~~~Q~~DGsw~g~wg----~~~~y~Ta~~l~aL~~~g~~~~~~~i~rav~~L~s~Q~~DGgWg~~~~sy~~~~~~ 546 (631)
T 2sqc_A 471 AVEYLKREQKPDGSWFGRWG----VNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYA 546 (631)
T ss_dssp HHHHHHHHCCTTSCCCCSSB----SSHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHTCCTTSCCCCCGGGGTCGGGT
T ss_pred HHHHHHHhcCCCCCCCCCCC----CCchHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhCcCCCCcCCccccccccccC
Confidence 99999999999999987653 56666554444 4445321 2347899999999999999997653
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCC
Q 020097 291 -GDLPDLYHSFYGYTAFSLLEEP 312 (331)
Q Consensus 291 -~~~~D~~hT~~al~aLsll~~~ 312 (331)
...+|+++|+++|.+|..++..
T Consensus 547 ~~~~s~v~~Ta~ALlaL~~ag~~ 569 (631)
T 2sqc_A 547 GKGASTPSQTAWALMALIAGGRA 569 (631)
T ss_dssp TCSSCCHHHHHHHHHHHHHTTCS
T ss_pred CCCCCCHHHHHHHHHHHHHcCCC
Confidence 3468999999999999998876
No 14
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.82 E-value=2.9e-19 Score=184.26 Aligned_cols=221 Identities=19% Similarity=0.153 Sum_probs=161.5
Q ss_pred CCcHHHHHHHHHHHHHhCCCCC---cccHHHHHHHHHhccCCC--------------CCCcccc-cCCccChhHHHHHHH
Q 020097 88 GSNLASTYCALAILKAVGYNFA---NIDSKSILTSMRNLQQHD--------------GSFMPIH-FGAEKDLRFVYCAAA 149 (331)
Q Consensus 88 ~~~l~~Ty~Al~~L~~lg~~~~---~~~~~~~~~~l~~~q~~d--------------G~f~~~~-~~~~~d~~~ty~al~ 149 (331)
.+.++.|.+++++|...|..-+ ....+++++||.++|..+ |+|.... ..+.+|+..|..++.
T Consensus 383 gs~vwdTalal~AL~~ag~~~~~~~~~~l~ka~~~L~~~Q~~~~~~d~~~~~r~~~~GGW~f~~~~~~~pd~d~TA~vl~ 462 (732)
T 1w6k_A 383 GSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALK 462 (732)
T ss_dssp CCHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCCCTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHHhcccccCCcccccccCCCCCeecCCCCCCCCCccccHHHHHH
Confidence 4779999999999998874221 112468999999999765 8885432 123468888888888
Q ss_pred HHHHhCC--------CCcccHHHHHHHHHhcCCCCCCcccCCC---------------------CCCChhhHHHHHHHHH
Q 020097 150 ICFLLED--------WSGMDRERAKAYILNCQSYDGGFGLTPG---------------------SESHGGGTYCAVASLR 200 (331)
Q Consensus 150 ~l~lL~~--------~~~~~~~~~~~~I~~~Q~~dGGFg~~p~---------------------~esh~~~Ty~AlaaL~ 200 (331)
++..+.. .....++++++||+++|++||||+.... ..+++..|.++|.+|.
T Consensus 463 aL~~~~~~~~~~g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~ 542 (732)
T 1w6k_A 463 AVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALK 542 (732)
T ss_dssp HHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHH
T ss_pred HHHHHhcccccccchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHHH
Confidence 8777642 1233468999999999999999974311 1246678999999999
Q ss_pred HcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCccccCCCCCCCCcchhhHHHHHHHHhCCCCC-----CCHHHHHHH
Q 020097 201 LMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNL-----IDKEALRGF 275 (331)
Q Consensus 201 llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~~yt~~~~a~L~lL~~~~~-----~~~~~~~~~ 275 (331)
.++...+....+. ....++++++||.++|.+||||.++.+ ..++..|++++.+|..+|.... ..++++++|
T Consensus 543 ~~~~~~~~~~~~~---~~~~i~rAv~yL~~~Q~~DGsW~g~wg-~~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~ 618 (732)
T 1w6k_A 543 YFHKRFPEHRAAE---IRETLTQGLEFCRRQQRADGSWEGSWG-VCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDF 618 (732)
T ss_dssp HHHHHCTTSSHHH---HHHHHHHHHHHHHHHSCTTSCCCCSSB-SSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHH
T ss_pred Hhccccccccchh---hHHHHHHHHHHHHhhcCCCCCccCcCC-CccchHHHHHHHHHHHhCCcccccchhHHHHHHHHH
Confidence 8864311000000 013478999999999999999998654 3445557789999999986432 247899999
Q ss_pred HHhccCCCCCcCCC----------CCCCCCHHHHHHHHHHHHhcCCC
Q 020097 276 LLTCQSQYGGFGKC----------PGDLPDLYHSFYGYTAFSLLEEP 312 (331)
Q Consensus 276 L~~~Q~~~GGf~~~----------p~~~~D~~hT~~al~aLsll~~~ 312 (331)
|+++|+.+|||+.. ++..+|+..|+|+|.+|..+++.
T Consensus 619 Lls~Q~~DGGWge~~~s~~~~~y~~~~~s~v~~TAwALlALl~ag~~ 665 (732)
T 1w6k_A 619 LLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMAVRHP 665 (732)
T ss_dssp HHTTCCTTSCCCBCTHHHHHTSCCBCSSCCHHHHHHHHHHHHHTTCS
T ss_pred HHHhcccCCCCCCCCccccccccCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999864 35578999999999999877754
No 15
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.60 E-value=9.8e-14 Score=129.33 Aligned_cols=247 Identities=15% Similarity=0.061 Sum_probs=164.2
Q ss_pred ccccCCCcchhhhhhhhhHHHHHhhhHHhhcCCCC---CcChHHH-------HHHHHHhccCCCCCCCCCCCCccccCCC
Q 020097 2 MMYESLPHHYQYQEINRITLAHFAISGLCLLGALD---RVDKDAV-------SDWVLSLQAHPSNKADLTNGEFYGFHGS 71 (331)
Q Consensus 2 ~~l~~lp~~~~~~d~~r~~~~y~~l~~L~lL~~~~---~~~~~~~-------~~~i~~~q~~~~~~~~~~dg~~ggf~~~ 71 (331)
..|..+|.-+..+-.+++.-..+.+.-|+..+..+ ...++++ ++|++++|+ .||+|+.|.+.
T Consensus 8 ~~L~~~P~GC~EQ~~~~~~P~~~~~~yl~~~~~~~~~~~~~~~~~~~~i~~g~~~~l~~q~--------~dGgf~~f~~~ 79 (310)
T 2wy7_A 8 KHLIVTPSGAGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQ--------PSSAFAAFVKR 79 (310)
T ss_dssp GGGCCCCCSSTTHHHHHHHHHHHHHHHHHHHTCHHHHCTTHHHHHHHHHHHHHHHHHTTBC--------TTSCBCSSTTS
T ss_pred HHHHhCCCCcHHHHHHHHhHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHHHHHHHhcC--------CCCCcccCCCC
Confidence 35778899999999999999999998888887532 1223334 455999996 68999999864
Q ss_pred CCCCCCCCCCCCccCCCCcHHHHHHHHHHHHHhCCCCCccc---HHHHHHHHHh-ccCCCCCCccccc-------CC---
Q 020097 72 PSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANID---SKSILTSMRN-LQQHDGSFMPIHF-------GA--- 137 (331)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~l~~Ty~Al~~L~~lg~~~~~~~---~~~~~~~l~~-~q~~dG~f~~~~~-------~~--- 137 (331)
+ ++.+.|.+++.+|...+.-. .++ .+++++||.+ .|++||+|..... |+
T Consensus 80 ~----------------~s~wlTa~v~~~l~~a~~~~-~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~g~~~~ 142 (310)
T 2wy7_A 80 A----------------PSTWLTAYVVKVFSLAVNLI-AIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRN 142 (310)
T ss_dssp C----------------CCHHHHHHHHHHHHHHTTTS-CCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGTT
T ss_pred C----------------ccHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhcCCCCccccCCCccCHhhcCCccc
Confidence 3 68999999999999987422 233 3579999996 9999999964210 11
Q ss_pred --ccChhHHHHHHHHHHHhCC-----C--CcccHHHHHHHHHhcCCC-CCCcccCCCCCCChhhHHHHHHHHHHcCCccc
Q 020097 138 --EKDLRFVYCAAAICFLLED-----W--SGMDRERAKAYILNCQSY-DGGFGLTPGSESHGGGTYCAVASLRLMGFIED 207 (331)
Q Consensus 138 --~~d~~~ty~al~~l~lL~~-----~--~~~~~~~~~~~I~~~Q~~-dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~ 207 (331)
+.++..|..++.+|...+. . ....++++++||.++|+. +++++ ..++-.+|.+.|..
T Consensus 143 ~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~-----------~a~~ayAL~l~g~~-- 209 (310)
T 2wy7_A 143 NNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYT-----------VAIAGYALAQMGRL-- 209 (310)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHGGGCCCHHH-----------HHHHHHHHHHTTCC--
T ss_pred ccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHhhccCCHHH-----------HHHHHHHHHhcCCc--
Confidence 1123333344444433321 1 123568999999999874 22222 22233344455532
Q ss_pred cccccCCCCCCCCHHHHHHHHHhcCCCCccccCCCCCC-CCcchhhHHHHHHHHhCCCCCCCHHHHHHHHHhccCCCCCc
Q 020097 208 NVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKP-SDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGF 286 (331)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~-~D~~yt~~~~a~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf 286 (331)
.+.+++.|.+... +|+|-..++.. .++..|-|++-+|...+. ....+++++||.+.|+.+|||
T Consensus 210 -------------~~~~l~~l~~~~~-~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--~~~~~~~v~wL~~qq~~~Ggw 273 (310)
T 2wy7_A 210 -------------KGPLLNKFLTTAK-DKNRWEDPGKQLYNVEATSYALLALLQLKD--FDFVPPVVRWLNEQRYYGGGY 273 (310)
T ss_dssp -------------CHHHHHHHHHHSB-TTTBCCCSSCHHHHHHHHHHHHHHHHHHTC--TTTHHHHHHHHHHTTCCCCST
T ss_pred -------------HHHHHHHHHHhcc-CCCCCCCCCCcccchHHHHHHHHHHHhcCC--hhhHHHHHHHHHHccCCCCCe
Confidence 2456777777543 45443333321 155567777777776664 356899999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhc
Q 020097 287 GKCPGDLPDLYHSFYGYTAFSLL 309 (331)
Q Consensus 287 ~~~p~~~~D~~hT~~al~aLsll 309 (331)
.. ...|..+|-||+.-
T Consensus 274 ~s-------Tq~T~~aL~AL~~y 289 (310)
T 2wy7_A 274 GS-------TQATFMVFQALAQY 289 (310)
T ss_dssp TC-------HHHHHHHHHHHHHH
T ss_pred ec-------cHHHHHHHHHHHHH
Confidence 73 47888888888764
No 16
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.57 E-value=2.2e-13 Score=124.88 Aligned_cols=234 Identities=15% Similarity=0.088 Sum_probs=149.7
Q ss_pred hhhhhhhHHHHHhhhHHhhcCCCC---CcChHHH-------HHHHHHhccCCCCCCCCCCCCccccCCCCCCCCCCCCCC
Q 020097 13 YQEINRITLAHFAISGLCLLGALD---RVDKDAV-------SDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPDDNG 82 (331)
Q Consensus 13 ~~d~~r~~~~y~~l~~L~lL~~~~---~~~~~~~-------~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~~~~~~~ 82 (331)
.+--+++.-..+.+.=|+..+..+ ...++++ ++|++++|+ .||+|+.|.+.+
T Consensus 3 EQ~~~~~~P~~~~~~yL~~~~~~~~~~~~~~~~~~~~i~~g~~~~l~~q~--------~dGgf~~f~~~~---------- 64 (277)
T 1qqf_A 3 EQNMIGMTPTVIAVHYLDQTEQWEKFGLEKRQEALELIKKGYTQQLAFKQ--------PISAYAAFNNRP---------- 64 (277)
T ss_dssp THHHHHHHHHHHHHHHHHHHTCHHHHCGGGHHHHHHHHHHHHHHHHTTBC--------TTSCBCSSTTSC----------
T ss_pred hHHHHHHHHHHHHHHHHHHcCCcccCChhHHHHHHHHHHHHHHHHHHhcC--------CCCCccccCCCC----------
Confidence 344567777777777777776532 2223444 445999996 689999998644
Q ss_pred CccCCCCcHHHHHHHHHHHHHhCCCCCccc---HHHHHHHHHh-ccCCCCCCccccc-------CC-----ccChhHHHH
Q 020097 83 VLMHNGSNLASTYCALAILKAVGYNFANID---SKSILTSMRN-LQQHDGSFMPIHF-------GA-----EKDLRFVYC 146 (331)
Q Consensus 83 ~~~~~~~~l~~Ty~Al~~L~~lg~~~~~~~---~~~~~~~l~~-~q~~dG~f~~~~~-------~~-----~~d~~~ty~ 146 (331)
++.+.|-+++.+|...+.-. .++ .+++++||.+ .|++||+|..... |+ +.++..|..
T Consensus 65 ------~s~wlTa~v~~~l~~a~~~~-~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~~~g~~~~~~~~~~~lta~ 137 (277)
T 1qqf_A 65 ------PSTWLTAYVSRVFSLAANLI-AIDSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQEMIGGFRNTKEADVSLTAF 137 (277)
T ss_dssp ------CCHHHHHHHHHHHHHHTTTS-CCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGGSCTTHHHHHHHH
T ss_pred ------ccHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhccCCCCCccCCccccchhhcCCCCCCccCccchHHH
Confidence 68999999999999987422 233 3578999996 9999999964210 11 112333434
Q ss_pred HHHHHHHhCC-----C--CcccHHHHHHHHHhcCCC-CCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCC
Q 020097 147 AAAICFLLED-----W--SGMDRERAKAYILNCQSY-DGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSI 218 (331)
Q Consensus 147 al~~l~lL~~-----~--~~~~~~~~~~~I~~~Q~~-dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~ 218 (331)
++.+|...+. . ....++++++||.++++. ++++ .......+|.+.|..
T Consensus 138 vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y-----------~~a~~ayAl~l~g~~------------- 193 (277)
T 1qqf_A 138 VLIALQEARDICEGQVNSLPGSINKAGEYLEASYLNLQRPY-----------TVAIAGYALALMNKL------------- 193 (277)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTTCCCHH-----------HHHHHHHHHHHTTCC-------------
T ss_pred HHHHHHhhhhccccCCCchHHHHHHHHHHHHHHhccCCCHH-----------HHHHHHHHHHHcCCh-------------
Confidence 4444433321 1 133578999999999874 2222 223333445556543
Q ss_pred CCHHHHHHHHHhcCCCCccccCCCCCC-CCcchhhHHHHHHHHhCCCCCCCHHHHHHHHHhccCCCCCcCCCCCCCCCHH
Q 020097 219 IDLPLLLSWCLQRQAADGGFQGRANKP-SDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPGDLPDLY 297 (331)
Q Consensus 219 ~~~~~~~~wL~~~Q~~dGGf~gr~~k~-~D~~yt~~~~a~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~~~p~~~~D~~ 297 (331)
.+.+++.|.++.. +|+|-.+++.. .++..|-|++-+|...+. ....+++++||.+.|+.+|||.. ..
T Consensus 194 --~~~~l~~l~~~~~-~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--~~~~~~~v~wL~~qq~~~Ggw~s-------Tq 261 (277)
T 1qqf_A 194 --EEPYLTKFLNTAK-DRNRWEEPGQQLYNVEATSYALLALLLLKD--FDSVPPVVRWLNDERYYGGGYGS-------TQ 261 (277)
T ss_dssp --CTTHHHHHHHHSB-TTTBCCCTTCHHHHHHHHHHHHHHHHHTTC--TTSHHHHHHHHHHCCCCTTSTTC-------HH
T ss_pred --HHHHHHHHHHhcc-CCCCCCCCCCccchhHHHHHHHHHHHhcCC--hhhHHHHHHHHHHccCCCCCeec-------ch
Confidence 1235667776544 55554433321 145566677777666654 45689999999999999999984 47
Q ss_pred HHHHHHHHHH
Q 020097 298 HSFYGYTAFS 307 (331)
Q Consensus 298 hT~~al~aLs 307 (331)
.|..||-||+
T Consensus 262 ~T~~aL~AL~ 271 (277)
T 1qqf_A 262 ATFMVFQALA 271 (277)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888886
No 17
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=99.40 E-value=2.6e-11 Score=115.55 Aligned_cols=251 Identities=13% Similarity=0.013 Sum_probs=155.8
Q ss_pred cccCCCcchhhhhhhhhHHHHHhhhHHhhcCC---CCCc-------ChHHHHHHHHHhccCCCCCCCCCCCCccccCCCC
Q 020097 3 MYESLPHHYQYQEINRITLAHFAISGLCLLGA---LDRV-------DKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSP 72 (331)
Q Consensus 3 ~l~~lp~~~~~~d~~r~~~~y~~l~~L~lL~~---~~~~-------~~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~ 72 (331)
.|..+|.-+..+-.+++.-..+.+..|+-.+. ++.. ..++.++||+++|+ .||+|+.|.+.+
T Consensus 46 ~L~~~P~Gc~EQ~~s~~~P~~~v~~~l~~~~~w~~~~~~~~~~~~~~i~~g~~~ll~~Q~--------~dGgf~~~~~~~ 117 (367)
T 1hzf_A 46 SLLRLPRGCGEQTMIYLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRK--------ADGSYAAWLSRD 117 (367)
T ss_dssp TTCCCCCSSHHHHHHHHHHHHHHHHHHHHTTCSTTSCTTHHHHHHHHHHHHHHHHHTTBC--------TTSCBCSSTTSC
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHHHHHhccC--------CCCCeeccCCCC
Confidence 46778999999998998888888888876544 2211 12456789999997 689999997654
Q ss_pred CCCCCCCCCCCccCCCCcHHHHHHHHHHHHHhCCCCC--cccHHHHHHHHHhccCCCCCCccccc-------C----Ccc
Q 020097 73 SSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFA--NIDSKSILTSMRNLQQHDGSFMPIHF-------G----AEK 139 (331)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~l~~Ty~Al~~L~~lg~~~~--~~~~~~~~~~l~~~q~~dG~f~~~~~-------~----~~~ 139 (331)
++.+.|.+++.+|...+..+. ..-.+++++||.+.|++||+|..... | .++
T Consensus 118 ----------------~~~~lTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~~gg~~~~~~ 181 (367)
T 1hzf_A 118 ----------------SSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDE 181 (367)
T ss_dssp ----------------CCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGGGGGGSSTTH
T ss_pred ----------------CcHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccCCCcccccccccccccCCCCCCcc
Confidence 468899999999998875332 22236789999999999999964310 0 123
Q ss_pred ChhHHHHHHHHHHHhCCC-C-----------cccHHHHHHHHHhc--CCCCCCcccCCCCCCChhhHHHHHHHHHHcCCc
Q 020097 140 DLRFVYCAAAICFLLEDW-S-----------GMDRERAKAYILNC--QSYDGGFGLTPGSESHGGGTYCAVASLRLMGFI 205 (331)
Q Consensus 140 d~~~ty~al~~l~lL~~~-~-----------~~~~~~~~~~I~~~--Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~ 205 (331)
++..|.+++.+|...+.. . ...++++++||.+. ++.. +...-..+..+|.+.|..
T Consensus 182 ~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~~~~~~~-----------~~y~~Al~ayAL~l~~~~ 250 (367)
T 1hzf_A 182 TVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAGLL-----------GAHAAAITAYALTLTKAP 250 (367)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCC-----------CHHHHHHHHHHHHHTTCC
T ss_pred cccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHhhhcccC-----------CHHHHHHHHHHHHhcCCc
Confidence 345555566555443321 1 12467899999887 4321 111112222334445543
Q ss_pred cccccccCCCCCCCCHHHHHHHHHhcCCCCcc---ccCCCC---------------------CC-CCcchhhHHHHHHHH
Q 020097 206 EDNVLSKNTSSSIIDLPLLLSWCLQRQAADGG---FQGRAN---------------------KP-SDTCYAFWIGSVLRM 260 (331)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGG---f~gr~~---------------------k~-~D~~yt~~~~a~L~l 260 (331)
. ...+.+++-|.+.-..+|+ |..... .. .++.-|-|++-+|..
T Consensus 251 ~------------~~~~~~~~~L~~~a~~~~~~~~W~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~vE~TAyaLLall~ 318 (367)
T 1hzf_A 251 A------------DLRGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLL 318 (367)
T ss_dssp H------------HHHHHHHHHHHTTCEECSSCEECC------------------------CCCHHHHHHHHHHHHHHHH
T ss_pred H------------HHHHHHHHHHHHHhhhcCCCCccCCCCCcccccccccccccccccccCCCccchhHHHHHHHHHHHh
Confidence 2 1133456666665433344 321100 01 134445566666554
Q ss_pred hCCCCCCCHHHHHHHHHhccCCCCCcCCCCCCCCCHHHHHHHHHHHHh
Q 020097 261 LGGYNLIDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSL 308 (331)
Q Consensus 261 L~~~~~~~~~~~~~~L~~~Q~~~GGf~~~p~~~~D~~hT~~al~aLsl 308 (331)
.+. +....+++++||.+.|+.+|||+ ....|..||-||+.
T Consensus 319 ~~~-~~~~~~~iv~WL~~qrn~~Ggw~-------sTqdTvvAL~AL~~ 358 (367)
T 1hzf_A 319 HEG-KAEMADQASAWLTRQGSFQGGFR-------STQDTVIALDALSA 358 (367)
T ss_dssp HTC-SSHHHHHHHHHHHHHTTSTTCSC-------SHHHHHHHHHHHHH
T ss_pred ccC-chhhhHHHHHHHHhCcCCCCCcc-------cHHHHHHHHHHHHH
Confidence 432 22346899999999999999998 34788888888764
No 18
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=99.21 E-value=4e-10 Score=123.53 Aligned_cols=248 Identities=14% Similarity=0.090 Sum_probs=158.5
Q ss_pred ccccCCCcchhhhhhhhhHHHHHhhhHHhhcCCCCCcChHHHH-------HHHHHhccCCCCCCCCCCCCccccCCCCCC
Q 020097 2 MMYESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVS-------DWVLSLQAHPSNKADLTNGEFYGFHGSPSS 74 (331)
Q Consensus 2 ~~l~~lp~~~~~~d~~r~~~~y~~l~~L~lL~~~~~~~~~~~~-------~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~ 74 (331)
..|..+|..+..+-.+++....+++.-|+-.+......+++++ +|++++|+ .||+|+.|.+.+
T Consensus 829 ~~L~~~PyGC~EQ~~s~~~p~~~~~~yl~~~~~~~~~~~~~~~~~i~~g~~rll~~q~--------~dGgf~~f~~~~-- 898 (1325)
T 2pn5_A 829 DHLLGVPTGCGEQNMVKFVPNILVLDYLHAIGSKEQHLIDKATNLLRQGYQNQMRYRQ--------TDGSFGLWETTN-- 898 (1325)
T ss_dssp TCCCSSCCCSTTGGGGGTHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHGGGBC--------TTSCBCSSSSSC--
T ss_pred HHHhcCCCCchhHHHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCC--------CCCCeeccCCCC--
Confidence 3567789999999999999888888877766654322234444 46688986 689999997644
Q ss_pred CCCCCCCCCccCCCCcHHHHHHHHHHHHHhCC---CCCcccHHHHHHHHHhccCCCCCCccccc------CCccChhHHH
Q 020097 75 QLHPDDNGVLMHNGSNLASTYCALAILKAVGY---NFANIDSKSILTSMRNLQQHDGSFMPIHF------GAEKDLRFVY 145 (331)
Q Consensus 75 ~~~~~~~~~~~~~~~~l~~Ty~Al~~L~~lg~---~~~~~~~~~~~~~l~~~q~~dG~f~~~~~------~~~~d~~~ty 145 (331)
++.+.|.+++.+|..... .++.-..+++++||.+.|++||+|..... .++.+.+.+|
T Consensus 899 --------------~s~~lTa~v~~~l~~a~~~~~~v~~~~l~~a~~~L~~~q~~dG~f~~~~~~~~~~~~g~~~~~~~~ 964 (1325)
T 2pn5_A 899 --------------GSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKEMQGGLRNGVAL 964 (1325)
T ss_dssp --------------CCHHHHHHHHHHHHHHTTTCSCSCHHHHHHHHHHHHHTCCTTSCCCCCSCCSCHHHHCCSSTTHHH
T ss_pred --------------CCeeehHHHHHHHHHHHhhEEcCCHHHHHHHHHHHHhhhccCCCccccccccChhhcCcccCCccc
Confidence 689999999999998753 23222246899999999999999964210 0122234555
Q ss_pred HHHHHHHHhCCC-----CcccHHHHHHHHHhcCCC-CCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCC
Q 020097 146 CAAAICFLLEDW-----SGMDRERAKAYILNCQSY-DGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSII 219 (331)
Q Consensus 146 ~al~~l~lL~~~-----~~~~~~~~~~~I~~~Q~~-dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~ 219 (331)
.+.+...|++.. ....++++++||.+.++. +++|+. .++-.+|.+.|..
T Consensus 965 tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~~~~~~~~~-----------a~~ayaL~l~g~~-------------- 1019 (1325)
T 2pn5_A 965 TSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNAYDL-----------SIATYAMMLNGHT-------------- 1019 (1325)
T ss_dssp HHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGGGCCCHHHH-----------HHHHHHHHHHTCT--------------
T ss_pred cHHHHHHHhhCcccccccHHHHHHHHHHHHHhhcccCCHHHH-----------HHHHHHHHhcCCc--------------
Confidence 554333444321 113467899999998875 444432 1122255666642
Q ss_pred CHHHHHHHHHhcCC--CCc-cccCCCCCCCCcchhhHHHHHHHHhCCCCCCCHHHHHHHHHhccCCCCCcCCCCCCCCCH
Q 020097 220 DLPLLLSWCLQRQA--ADG-GFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPGDLPDL 296 (331)
Q Consensus 220 ~~~~~~~wL~~~Q~--~dG-Gf~gr~~k~~D~~yt~~~~a~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~~~p~~~~D~ 296 (331)
..+++++.|.++.. .++ +... ....++.-+-|++.+|-..+. .....++++||.+.|+.+|||. ..
T Consensus 1020 ~~~~~l~~L~~~~~~~~~~~~~~w--~~~s~ve~tA~aLlall~~~~--~~~~~~~v~wL~~q~~~~g~w~-------sT 1088 (1325)
T 2pn5_A 1020 MKEEALNKLIDMSFIDADKNERFW--NTTNPIETTAYALLSFVMAEK--YTDGIPVMNWLVNQRYVTGSFP-------ST 1088 (1325)
T ss_dssp THHHHHHHHHHTCEEETTTTEEEC--CSSSHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCCTTSSCS-------SH
T ss_pred hHHHHHHHHHhhhhhccCCCcccC--CCCCchHHHHHHHHHHhhhcc--chhhHHHHHHHHhccCCCCCcc-------ch
Confidence 24567778877532 221 1111 112345555566655554443 2245788999999999999998 35
Q ss_pred HHHHHHHHHHHhc
Q 020097 297 YHSFYGYTAFSLL 309 (331)
Q Consensus 297 ~hT~~al~aLsll 309 (331)
..|.++|.||+..
T Consensus 1089 q~T~~aL~AL~~y 1101 (1325)
T 2pn5_A 1089 QDTFVGLKALTKM 1101 (1325)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7888888888754
No 19
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.16 E-value=2.5e-10 Score=104.38 Aligned_cols=141 Identities=14% Similarity=0.089 Sum_probs=99.6
Q ss_pred HHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHh-cCCCCccccCC
Q 020097 163 ERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQ-RQAADGGFQGR 241 (331)
Q Consensus 163 ~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~-~Q~~dGGf~gr 241 (331)
++.+++++++|++||||+..++..++...|..++.+|..+..... + ....++++++||.+ +|.+||+|.++
T Consensus 41 ~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~-v-------~~~~i~~a~~~L~~~~Q~~dG~f~~~ 112 (277)
T 1qqf_A 41 KKGYTQQLAFKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLIA-I-------DSQVLCGAVKWLILEKQKPDGVFQED 112 (277)
T ss_dssp HHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSC-C-------CHHHHHHHHHHHHHHHBCTTSCBCCS
T ss_pred HHHHHHHHHhcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcCC-C-------CHHHHHHHHHHHHHhccCCCCCccCC
Confidence 445555999999999999999888999999999999999875420 0 01236789999995 99999999876
Q ss_pred CCC-------------CCCcchhhHHHHHHHHhCC-----CC--CCCHHHHHHHHHhccCC-------------------
Q 020097 242 ANK-------------PSDTCYAFWIGSVLRMLGG-----YN--LIDKEALRGFLLTCQSQ------------------- 282 (331)
Q Consensus 242 ~~k-------------~~D~~yt~~~~a~L~lL~~-----~~--~~~~~~~~~~L~~~Q~~------------------- 282 (331)
..- +.+..+|.+++.+|...+. .+ ...++++++||.++|+.
T Consensus 113 ~~~~~~~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAl~l~g~ 192 (277)
T 1qqf_A 113 GPVIHQEMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYLEASYLNLQRPYTVAIAGYALALMNK 192 (277)
T ss_dssp SCCSCGGGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTC
T ss_pred ccccchhhcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCC
Confidence 421 1234456777777765532 11 12357899999988764
Q ss_pred --------------CCCcCCCCCCC-CCHHHHHHHHHHHHhcCC
Q 020097 283 --------------YGGFGKCPGDL-PDLYHSFYGYTAFSLLEE 311 (331)
Q Consensus 283 --------------~GGf~~~p~~~-~D~~hT~~al~aLsll~~ 311 (331)
+|++-..|+.. .+++.|.|+|.+|...+.
T Consensus 193 ~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~ 236 (277)
T 1qqf_A 193 LEEPYLTKFLNTAKDRNRWEEPGQQLYNVEATSYALLALLLLKD 236 (277)
T ss_dssp CCTTHHHHHHHHSBTTTBCCCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhccCCCCCCCCCCccchhHHHHHHHHHHHhcCC
Confidence 33443344321 267899999999987765
No 20
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.10 E-value=4.6e-10 Score=104.41 Aligned_cols=141 Identities=16% Similarity=0.087 Sum_probs=99.3
Q ss_pred HHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHh-cCCCCccccCC
Q 020097 163 ERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQ-RQAADGGFQGR 241 (331)
Q Consensus 163 ~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~-~Q~~dGGf~gr 241 (331)
++.+++++++|++||||+..++..++...|..++.+|..+.+... + ....++++++||.+ +|.+||+|.++
T Consensus 57 ~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~-v-------~~~~i~~a~~~L~~~~Q~~dGsf~~~ 128 (310)
T 2wy7_A 57 KKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIA-I-------DSQVLCGAVKWLILEKQKPDGVFQED 128 (310)
T ss_dssp HHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSC-C-------CHHHHHHHHHHHHHHHBCTTSCBCCS
T ss_pred HHHHHHHHHhcCCCCCcccCCCCCccHHHHHHHHHHHHHHHhcCC-C-------CHHHHHHHHHHHHHhhcCCCCccccC
Confidence 455666999999999999999888999999999999999875420 0 01236789999995 99999999876
Q ss_pred CCC-------------CCCcchhhHHHHHHHHhCC-----CC--CCCHHHHHHHHHhccCC-------------------
Q 020097 242 ANK-------------PSDTCYAFWIGSVLRMLGG-----YN--LIDKEALRGFLLTCQSQ------------------- 282 (331)
Q Consensus 242 ~~k-------------~~D~~yt~~~~a~L~lL~~-----~~--~~~~~~~~~~L~~~Q~~------------------- 282 (331)
..- +.+..+|.+++.+|...+. .+ ...++++++||.++|+.
T Consensus 129 ~~~~~~~~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAL~l~g~ 208 (310)
T 2wy7_A 129 APVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGR 208 (310)
T ss_dssp SCCSCGGGGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHTTC
T ss_pred CCccCHhhcCCcccccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCC
Confidence 421 1234456777777765532 11 11357899999988764
Q ss_pred --------------CCCcCCCCCCC-CCHHHHHHHHHHHHhcCC
Q 020097 283 --------------YGGFGKCPGDL-PDLYHSFYGYTAFSLLEE 311 (331)
Q Consensus 283 --------------~GGf~~~p~~~-~D~~hT~~al~aLsll~~ 311 (331)
+|++-..++.. .+++.|+|+|.+|...+.
T Consensus 209 ~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~ 252 (310)
T 2wy7_A 209 LKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKD 252 (310)
T ss_dssp CCHHHHHHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHhccCCCCCCCCCCcccchHHHHHHHHHHHhcCC
Confidence 23333333321 267899999999987765
No 21
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=99.08 E-value=2.9e-09 Score=112.60 Aligned_cols=247 Identities=15% Similarity=0.063 Sum_probs=155.6
Q ss_pred cccCCCcchhhhhhhhhHHHHHhhhHHhhcCCCC---CcCh-------HHHHHHHHHhccCCCCCCCCCCCCccccCCCC
Q 020097 3 MYESLPHHYQYQEINRITLAHFAISGLCLLGALD---RVDK-------DAVSDWVLSLQAHPSNKADLTNGEFYGFHGSP 72 (331)
Q Consensus 3 ~l~~lp~~~~~~d~~r~~~~y~~l~~L~lL~~~~---~~~~-------~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~ 72 (331)
.|..+|..+..+-.+++.-..+++.-|+..+... ...+ +..+++++++|+ .||+|+.|.+.+
T Consensus 254 ~L~~yPyGC~EQ~~s~~~P~l~~~~yL~~~~q~~~~~~~~~~~a~~~i~~g~~rll~~Q~--------~DGsfs~w~~~~ 325 (915)
T 2hr0_B 254 HLIVTPSGCGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQ--------PSSAFAAFVKRA 325 (915)
T ss_dssp GGCSSCCCSTTGGGGGTHHHHHHHHHHHHTTCHHHHCTHHHHHHHHHHHHHHHHHGGGCC--------TTTCCBSSSSSC
T ss_pred HHHhCCCCcHHHHHHhhhhHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHHHHHhhc--------CCCCccccCCCC
Confidence 4777899999999999988888888777776421 1112 234556778886 689999997643
Q ss_pred CCCCCCCCCCCccCCCCcHHHHHHHHHHHHHhCCCCCccc---HHHHHHHHHh-ccCCCCCCccccc-------CC----
Q 020097 73 SSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANID---SKSILTSMRN-LQQHDGSFMPIHF-------GA---- 137 (331)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~l~~Ty~Al~~L~~lg~~~~~~~---~~~~~~~l~~-~q~~dG~f~~~~~-------~~---- 137 (331)
++.+.|-+++..|.....-. .++ .+++++||.+ .|.+||+|..... |+
T Consensus 326 ----------------~s~wlTAyv~~~l~~a~~~~-~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~gg~~~~ 388 (915)
T 2hr0_B 326 ----------------PSTWLTAYVVKVFSLAVNLI-AIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNN 388 (915)
T ss_dssp ----------------BCHHHHHHHHHHHHTTTTTS-CCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSCCCCSCCCC
T ss_pred ----------------CcceehHHHHHHHHHhhhcC-CCCHHHHHHHHHHHHHhhccCCCccccCccccchhhcCCccCc
Confidence 57999999999998876322 233 3678999995 9999999953210 11
Q ss_pred -ccChhHHHHHHHHHHHhCCC-----C--cccHHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccc
Q 020097 138 -EKDLRFVYCAAAICFLLEDW-----S--GMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNV 209 (331)
Q Consensus 138 -~~d~~~ty~al~~l~lL~~~-----~--~~~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~ 209 (331)
+.++..|.+++.+|...+.. + ...++++++||.+.+..- .+.........+|.+.|..
T Consensus 389 ~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~~~~~----------~~~y~~a~layAL~l~g~~---- 454 (915)
T 2hr0_B 389 NEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNL----------QRSYTVAIAGYALAQMGRL---- 454 (915)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHHHHHGGGC----------CSHHHHHHHHHHHHTTTCC----
T ss_pred cccccccHHHHHHHHHhcccccccCcccchHHHHHHHHHHHHhhhcc----------CCHHHHHHHHHHHHHcCCh----
Confidence 12344444455555544431 1 224578999999876541 0111111111234444432
Q ss_pred cccCCCCCCCCHHHHHHHHHhcCCCCcc-ccCCCCCCCCcchhhHHHHHHHHhCCCCCCCHHHHHHHHHhccCCCCCcCC
Q 020097 210 LSKNTSSSIIDLPLLLSWCLQRQAADGG-FQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGK 288 (331)
Q Consensus 210 ~~~~~~~~~~~~~~~~~wL~~~Q~~dGG-f~gr~~k~~D~~yt~~~~a~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~~ 288 (331)
.+.+++.|.+... +|. |.+......++.-|-|++.+|...+.. ....++++||.+.|+.+|||..
T Consensus 455 -----------a~~~l~~L~~~~~-~~~~w~~~~~~~~~ve~TayaLlall~~~~~--~~~~~~v~wL~~qq~~~Ggw~S 520 (915)
T 2hr0_B 455 -----------KGPLLNKFLTTAK-DKNRWEDPGKQLYNVEATSYALLALLQLKDF--DFVPPVVRWLNEQRYYGGGYGS 520 (915)
T ss_dssp -----------CHHHHHHHHHTSB-TTTBCCCSSCHHHHHHHHHHHHHHHHHTTCT--TTHHHHHHHHHTCCCSSSSCCS
T ss_pred -----------HHHHHHHHHhhcc-CCCCCCCCCCCccchHHHHHHHHHHHhcCCh--hhHHHHHHHHHhcccCCCCccc
Confidence 2356777777543 343 332111112455566777777666643 3478899999999999999973
Q ss_pred CCCCCCCHHHHHHHHHHHHhc
Q 020097 289 CPGDLPDLYHSFYGYTAFSLL 309 (331)
Q Consensus 289 ~p~~~~D~~hT~~al~aLsll 309 (331)
...|..||-||+.-
T Consensus 521 -------TQdT~~Al~AL~~y 534 (915)
T 2hr0_B 521 -------TQATFMVFQALAQY 534 (915)
T ss_dssp -------HHHHHHHHHHHHHH
T ss_pred -------hhhHHHHHHHHHHH
Confidence 36688888887643
No 22
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=99.08 E-value=2.2e-09 Score=118.17 Aligned_cols=261 Identities=13% Similarity=0.070 Sum_probs=164.6
Q ss_pred ccccCCCcchhhhhhhhhHHHHHhhhHHhhcCCCCCcCh-------HHHHHHHHHhccCCCCCCCCCCCCccccCCCCCC
Q 020097 2 MMYESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDK-------DAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSS 74 (331)
Q Consensus 2 ~~l~~lp~~~~~~d~~r~~~~y~~l~~L~lL~~~~~~~~-------~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~ 74 (331)
+.|..+|..+..|-.+++.-.-+++.-|+-.+...+..+ ++.++|++++|+ .||+|+.|.+.+.
T Consensus 940 ~~L~~yPyGC~EQ~ms~~~P~l~~~~yL~~t~q~~~~~~~~a~~~i~~g~~~ll~~q~--------~dGgf~~f~~~~~- 1010 (1451)
T 4acq_A 940 QNLLQMPYGCGEXNMVLFAPNIYVLDYLNETQQLTPEIKSKAIGYLNTGYQRQLNYKH--------YDGSYSTFGERYG- 1010 (1451)
T ss_dssp GGGCCCCCSSTTTTHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHGGGBC--------TTSCBCSSTTGGG-
T ss_pred HHHHhCCCCchhhhhhhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhcC--------CCCCeeeccCCCC-
Confidence 457789999999999999998888888877765432222 345689999996 6899999975321
Q ss_pred CCCCCCCCCccCCCCcHHHHHHHHHHHHHhCCCC--CcccHHHHHHHHHhccCCCCCCccc-cc------CC-ccChhHH
Q 020097 75 QLHPDDNGVLMHNGSNLASTYCALAILKAVGYNF--ANIDSKSILTSMRNLQQHDGSFMPI-HF------GA-EKDLRFV 144 (331)
Q Consensus 75 ~~~~~~~~~~~~~~~~l~~Ty~Al~~L~~lg~~~--~~~~~~~~~~~l~~~q~~dG~f~~~-~~------~~-~~d~~~t 144 (331)
.+.++.|.|-+++..|......+ +....+++++||.+.|++||+|... .+ |+ +.++..|
T Consensus 1011 -----------~~~~s~wlTAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~~~~m~gg~~~~~~lT 1079 (1451)
T 4acq_A 1011 -----------RNQGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLLNNAIKGGVEDEVTLS 1079 (1451)
T ss_dssp -----------CCCCCHHHHHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECCCCCCSCGGGCCSCSCHHHHH
T ss_pred -----------CCCCchhHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccCCcccccCcccchhhcCCCCCCccch
Confidence 01368999999999999877432 3223467899999999999999632 11 22 2455566
Q ss_pred HHHHHHHHHhCCC-CcccHHHHHHHHHhcCCC--CCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCH
Q 020097 145 YCAAAICFLLEDW-SGMDRERAKAYILNCQSY--DGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDL 221 (331)
Q Consensus 145 y~al~~l~lL~~~-~~~~~~~~~~~I~~~Q~~--dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~ 221 (331)
..++.+|...+.. ....++++++||.+.... +|+- ..+.-..+-.-.||++.|..+ ..
T Consensus 1080 Ayvl~aL~~~g~~~~~~~i~~A~~~L~~~~~~~~~~~~------~~~~y~~AllAyAlal~g~~~-------------~~ 1140 (1451)
T 4acq_A 1080 AYITIALLEIPLTVTHPVVRNALFCLESAWKTAQEGDH------GSHVYTKALLAYAFALAGNQD-------------KR 1140 (1451)
T ss_dssp HHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHTSSCS------SSTHHHHHHHHHHHHHHTCHH-------------HH
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhhhhcccccc------cCChHHHHHHHHHHHhcCChh-------------HH
Confidence 6677666666642 234578999999875211 1110 112333334455567777643 13
Q ss_pred HHHHHHHHhcCCCCcccc--CCCCC--------------CCCcchhhHHHHHHHHhCCC----CCCCHHHHHHHHHhccC
Q 020097 222 PLLLSWCLQRQAADGGFQ--GRANK--------------PSDTCYAFWIGSVLRMLGGY----NLIDKEALRGFLLTCQS 281 (331)
Q Consensus 222 ~~~~~wL~~~Q~~dGGf~--gr~~k--------------~~D~~yt~~~~a~L~lL~~~----~~~~~~~~~~~L~~~Q~ 281 (331)
+.+++=|.++...+||.. +++.+ ..++.-|=|++-++-.++.. +.....++++||.+.|+
T Consensus 1141 ~~~l~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~s~~vE~TayaLLall~~~~~~~~~d~~~a~~iv~WL~~qr~ 1220 (1451)
T 4acq_A 1141 KEVLKSLNEEAVKKDNSVHWERPQKPKAPVGHFYEPQAPSAEVEMTSYVLLAYLTAQPAPTSEDLTSATNIVKWITKQQN 1220 (1451)
T ss_dssp HHHHHHHHHHCCBCSSCBCCCCCCCSSSCSSSTTCCCTTGGGGTHHHHHHHHHHCCSSCCCHHHHHHHHTTHHHHTTCCC
T ss_pred HHHHHHHHHHhhccCCceecCCCCCCccccccccccCCchHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHcCC
Confidence 446777777665566622 11111 01233333444444333311 11235678999999999
Q ss_pred CCCCcCCCCCCCCCHHHHHHHHHHHHh
Q 020097 282 QYGGFGKCPGDLPDLYHSFYGYTAFSL 308 (331)
Q Consensus 282 ~~GGf~~~p~~~~D~~hT~~al~aLsl 308 (331)
..|||+. .-.|..||-||+-
T Consensus 1221 ~~Ggf~S-------TQdTv~aL~ALa~ 1240 (1451)
T 4acq_A 1221 AQGGFSS-------TQDTVVALHALSK 1240 (1451)
T ss_dssp TTSCCSS-------HHHHHHHHHHHHH
T ss_pred CCCCccc-------HHHHHHHHHHHHH
Confidence 9999983 4567777777764
No 23
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=98.66 E-value=2.7e-06 Score=95.09 Aligned_cols=248 Identities=15% Similarity=0.118 Sum_probs=149.8
Q ss_pred ccccCCCcchhhhhhhhhHHHHHhhhHHhhcCCCC---CcChHHHHHHH-------HHhccCCCCCCCCCCCCccccCCC
Q 020097 2 MMYESLPHHYQYQEINRITLAHFAISGLCLLGALD---RVDKDAVSDWV-------LSLQAHPSNKADLTNGEFYGFHGS 71 (331)
Q Consensus 2 ~~l~~lp~~~~~~d~~r~~~~y~~l~~L~lL~~~~---~~~~~~~~~~i-------~~~q~~~~~~~~~~dg~~ggf~~~ 71 (331)
..|..+|..+..+-.+++.-..+++.-|+..+... ...+++++++| +++|+ .||+|+.|.+.
T Consensus 1000 ~~L~~~PyGC~EQ~~s~~~P~~~~~~yL~~~~q~~~~~~~~~~~~~~~i~~g~~r~l~~q~--------~dGsfs~w~~~ 1071 (1661)
T 2b39_A 1000 KHLIQTPSGCGEQNMIGMTPTVIAVHYLDSTDQWEKFGLEKRQESLELIRKGYTQQLAFRQ--------KSSAYAAFQYR 1071 (1661)
T ss_dssp GGSSSSCCCSTTGGGGGTHHHHHHHHHHHHHTCGGGSCSHHHHHHHHHHHHHHHHHHTTBC--------TTSCBCSSTTS
T ss_pred HHHhhcCCCchhhhhhhcccHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHhhc--------CCCCccccCCC
Confidence 35777899999999999998888888787776543 22234455544 34553 68999988754
Q ss_pred CCCCCCCCCCCCccCCCCcHHHHHHHHHHHHHhCCCCCccc---HHHHHHHHHh-ccCCCCCCccccc-------CC---
Q 020097 72 PSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANID---SKSILTSMRN-LQQHDGSFMPIHF-------GA--- 137 (331)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~l~~Ty~Al~~L~~lg~~~~~~~---~~~~~~~l~~-~q~~dG~f~~~~~-------~~--- 137 (331)
+ ++.|.|-+++..|.....-. .++ ..++++||.+ .|.+||+|..... |+
T Consensus 1072 ~----------------~s~wLTAyv~~~l~~A~~~~-~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~ 1134 (1661)
T 2b39_A 1072 P----------------PSTWLTAYVVKVFALAANLI-AIDSKDLCETVKWLILEKQKPDGIFQEDGPVIHQEMIGGFRD 1134 (1661)
T ss_dssp C----------------CCHHHHHHHHHHHHHHTTTS-CCCHHHHHHHHHHHHHHTBCTTSCBCCCSCCCCTTSCCCTTC
T ss_pred C----------------CchhhhHHHHHHHHhhhhcc-cCCHHHHHHHHHHhhHhhCCCCCccccccceechhhcCCccc
Confidence 3 58999999999999877432 233 3678899995 9999999953210 11
Q ss_pred --ccChhHHHHHHHHHHHhCCC-----C--cccHHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCcccc
Q 020097 138 --EKDLRFVYCAAAICFLLEDW-----S--GMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDN 208 (331)
Q Consensus 138 --~~d~~~ty~al~~l~lL~~~-----~--~~~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~ 208 (331)
+.++..+.+++.+|...+.. + ...++++++||.+.... + .+.-....+..+|.+.|..
T Consensus 1135 ~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~~~i~~a~~yL~~~~~~---~-------~~~y~~A~layAL~l~g~~--- 1201 (1661)
T 2b39_A 1135 TREKDVSLTAFVLIALHEAKDICEAQVNSLGRSIAKAGDFLENHYRE---L-------RRPYTVAIAAYALALLGKL--- 1201 (1661)
T ss_dssp CTTSSHHHHHHHHHHHHHTTTTTTTTCSSHHHHHHHHHHHHHHHTTT---C-------CSHHHHHHHHHHHHHTTCC---
T ss_pred cccCccccHHHHHHHHHhccccccccCcchhHHHHHHHHHHHHhhhc---c-------CCHHHHHHHHHHHHHcCCc---
Confidence 12455544455555443321 1 12456889999775332 1 1111112222344455532
Q ss_pred ccccCCCCCCCCHHHHHHHHHhcCCCCccccCCCCCCCCcchhhHHHHHHHHhCCCCCCCHHHHHHHHHhccCCCCCcCC
Q 020097 209 VLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGK 288 (331)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~~yt~~~~a~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~~ 288 (331)
.+.+++.|.+......-|........|+.-+-+++.++...+.. ....++++||.+.|+..|||..
T Consensus 1202 ------------a~~~l~~L~~~~~~~~~W~~~~~~~~~vE~tayaLlall~~~~~--~~~~~iv~wL~~qr~~~gg~~S 1267 (1661)
T 2b39_A 1202 ------------EGDRLTKFLNTAKEKNRWEEPNQKLYNVEATSYALLALLARKDY--DTTPPVVRWLNEQRYYGGGYGS 1267 (1661)
T ss_dssp ------------CHHHHHHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTCT--TTSHHHHHHHHHCCTBTTBBCS
T ss_pred ------------HHHHHHHHHhhccCCCCCCCCCCCcchHHHHHHHHHHHHhcCCh--hhHHHHHHHHHhcccCCCCccc
Confidence 24567777775542222322111011333444555555555543 3457889999999999999984
Q ss_pred CCCCCCCHHHHHHHHHHHHh
Q 020097 289 CPGDLPDLYHSFYGYTAFSL 308 (331)
Q Consensus 289 ~p~~~~D~~hT~~al~aLsl 308 (331)
...|..||-||+.
T Consensus 1268 -------TqdT~~Al~AL~~ 1280 (1661)
T 2b39_A 1268 -------TQATFMVFQALAQ 1280 (1661)
T ss_dssp -------HHHHHHHHHHHHH
T ss_pred -------chHHHHHHHHHHH
Confidence 4667777777764
No 24
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=98.63 E-value=3.1e-07 Score=87.24 Aligned_cols=131 Identities=17% Similarity=0.060 Sum_probs=91.5
Q ss_pred HHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCccccCC
Q 020097 162 RERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGR 241 (331)
Q Consensus 162 ~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr 241 (331)
+++++++|++.|++||||+..++..++...|..++-+|..++... .. ....++++++||.++|.+||+|.++
T Consensus 93 i~~g~~~ll~~Q~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~~~-~v-------~~~~i~~a~~~L~~~Q~~dG~~~~~ 164 (367)
T 1hzf_A 93 IQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQV-GG-------SPEKLQETSNWLLSQQQADGSFQDP 164 (367)
T ss_dssp HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGT-CC-------CHHHHHHHHHHHGGGBCTTSCBCCS
T ss_pred HHHHHHHHHhccCCCCCeeccCCCCCcHHHHHHHHHHHHHHHHHh-CC-------CHHHHHHHHHHHHHhhccCCCcccc
Confidence 467889999999999999998877778888989999998886432 00 0124788999999999999999876
Q ss_pred CCC------------CCCcchhhHHHHHHHHhCCCC-C-----------CCHHHHHHHHHhc--cCCCCCcCCCCCCCCC
Q 020097 242 ANK------------PSDTCYAFWIGSVLRMLGGYN-L-----------IDKEALRGFLLTC--QSQYGGFGKCPGDLPD 295 (331)
Q Consensus 242 ~~k------------~~D~~yt~~~~a~L~lL~~~~-~-----------~~~~~~~~~L~~~--Q~~~GGf~~~p~~~~D 295 (331)
... +.++.-|.|++.+|...+... . ..++++++||.+. |+. .+
T Consensus 165 ~~~~~~~~~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~~~~~~-----------~~ 233 (367)
T 1hzf_A 165 CPVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAGL-----------LG 233 (367)
T ss_dssp SCCSCGGGGGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-----------CC
T ss_pred cccccccccCCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHhhhccc-----------CC
Confidence 332 123445677888886555310 0 1257899999766 431 35
Q ss_pred HHHHHHHHHHHHhcCC
Q 020097 296 LYHSFYGYTAFSLLEE 311 (331)
Q Consensus 296 ~~hT~~al~aLsll~~ 311 (331)
+|.-...-.+|++.+.
T Consensus 234 ~y~~Al~ayAL~l~~~ 249 (367)
T 1hzf_A 234 AHAAAITAYALTLTKA 249 (367)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCC
Confidence 6666665556666654
No 25
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=98.59 E-value=1.7e-07 Score=89.11 Aligned_cols=175 Identities=11% Similarity=-0.009 Sum_probs=98.1
Q ss_pred HHHHHHHHHhccCCCCCCcccc-c------------------------------------CCccChhHHHHHHHHHHHhC
Q 020097 113 SKSILTSMRNLQQHDGSFMPIH-F------------------------------------GAEKDLRFVYCAAAICFLLE 155 (331)
Q Consensus 113 ~~~~~~~l~~~q~~dG~f~~~~-~------------------------------------~~~~d~~~ty~al~~l~lL~ 155 (331)
-+++.+.|...|+++|||.... . .+..|...|..++..|..+.
T Consensus 83 A~~iAd~ll~~Q~~~GGW~kn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~aL~rv~ 162 (408)
T 1r76_A 83 ARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQVV 162 (408)
T ss_dssp HHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccCCCCCCccccccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHHHHHHH
Confidence 3578999999999999995421 0 01234455666665554443
Q ss_pred CC-C-------cccHHHHHHHHHhcCCCCCCcccCC-CC-CCCh------hhHHHHHHHHHHcCCc--cccccccCC-CC
Q 020097 156 DW-S-------GMDRERAKAYILNCQSYDGGFGLTP-GS-ESHG------GGTYCAVASLRLMGFI--EDNVLSKNT-SS 216 (331)
Q Consensus 156 ~~-~-------~~~~~~~~~~I~~~Q~~dGGFg~~p-~~-esh~------~~Ty~AlaaL~llg~~--~~~~~~~~~-~~ 216 (331)
.. . ....+|+++||++.|.+||||+..- .. .-+. ..|..+|..|..++.. +..++++.. ..
T Consensus 163 ~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDvt~rvle~L~~~~~~~~~~~~~~~~~~~~ 242 (408)
T 1r76_A 163 SQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIRTR 242 (408)
T ss_dssp HHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHHHHHHHHHHHHHHhccCcccccchhhhhh
Confidence 21 1 1235789999999999999998862 11 0011 2355666666665541 111110000 00
Q ss_pred CCCCHHHHHHHHHhcCCC-CccccCCCCC--CCCc-----ch-----hh----HHHHHHHHhCCCCCC-----CHHHHHH
Q 020097 217 SIIDLPLLLSWCLQRQAA-DGGFQGRANK--PSDT-----CY-----AF----WIGSVLRMLGGYNLI-----DKEALRG 274 (331)
Q Consensus 217 ~~~~~~~~~~wL~~~Q~~-dGGf~gr~~k--~~D~-----~y-----t~----~~~a~L~lL~~~~~~-----~~~~~~~ 274 (331)
....++++++||+..|.+ ||.|. |.+- ...| |- +. -+...+.+++....- -++++++
T Consensus 243 ~~~av~Rgi~~Ll~~Qe~~dGsw~-rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~LM~~~~~~~~~~~aI~~Av~ 321 (408)
T 1r76_A 243 ALEATNAAIHCIVETQVVQDGKRL-GWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGGVA 321 (408)
T ss_dssp HHHHHHHHHHHHHHHSCEETTEEC-CCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccCCccc-chhcccccccCcchhhhccCCccccHHHHHHHHHHHccCCCCCHHHHHHHHHHHH
Confidence 023478999999999999 99988 5321 0011 11 11 122223334432211 2689999
Q ss_pred HHHhccCCCCCcCC
Q 020097 275 FLLTCQSQYGGFGK 288 (331)
Q Consensus 275 ~L~~~Q~~~GGf~~ 288 (331)
||.++|+.+|+|-.
T Consensus 322 WL~s~Q~~dg~w~~ 335 (408)
T 1r76_A 322 WLNTSVIRDRAWVK 335 (408)
T ss_dssp HHHHSCCCC-----
T ss_pred HHHHhhcCCCceee
Confidence 99999999999974
No 26
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=98.56 E-value=1.5e-05 Score=82.56 Aligned_cols=112 Identities=17% Similarity=0.080 Sum_probs=79.0
Q ss_pred ccccCCCcchhhhhhhhhHHHHHhhhHHhhcCCCCC---cChHHHHHHHHH-hccCCCCCCCCCCCCccccCCCCCCCCC
Q 020097 2 MMYESLPHHYQYQEINRITLAHFAISGLCLLGALDR---VDKDAVSDWVLS-LQAHPSNKADLTNGEFYGFHGSPSSQLH 77 (331)
Q Consensus 2 ~~l~~lp~~~~~~d~~r~~~~y~~l~~L~lL~~~~~---~~~~~~~~~i~~-~q~~~~~~~~~~dg~~ggf~~~~~~~~~ 77 (331)
..|..+|..+..+-.+++.-..|.+.-|+..+.... ..+++++++|.. .|.. ...+..||+|+.|.+.+
T Consensus 322 ~~Li~~P~GC~EQ~ms~~~p~i~v~~yl~~t~q~~~l~~~~~~~a~~~l~~gyqrl--l~~q~~DGsfs~w~~~~----- 394 (767)
T 4fxk_B 322 ASLLRLPRGCGEQTMIYLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRI--QQFRKADGSYAAWLSRD----- 394 (767)
T ss_dssp GGTSSCCCCSTTGGGGGTHHHHHHHHHHHHTCTTTTSCSSHHHHHHHHHHHHHHHH--TTTBCTTSCBBSSSSSC-----
T ss_pred HHHHhccccchhhHHHhhhhhhhHHHHHHhhhhhcccCHHHHHHHHHHHHHHHHHH--HHhhcCCCCcccCCCCC-----
Confidence 356778999999999999999999999988876322 223455555432 1100 01223789999996643
Q ss_pred CCCCCCccCCCCcHHHHHHHHHHHHHhCCCCCccc---HHHHHHHHHhccCCCCCCcc
Q 020097 78 PDDNGVLMHNGSNLASTYCALAILKAVGYNFANID---SKSILTSMRNLQQHDGSFMP 132 (331)
Q Consensus 78 ~~~~~~~~~~~~~l~~Ty~Al~~L~~lg~~~~~~~---~~~~~~~l~~~q~~dG~f~~ 132 (331)
++.+.|-+++.+|.....-. .++ ....++||.+.|.+||+|..
T Consensus 395 -----------~s~wLTAyV~~~l~~A~~~i-~id~~~i~~a~~wL~~~Q~~~G~f~e 440 (767)
T 4fxk_B 395 -----------SSTWLTAFVLKVLSLAQEQV-GGSPEKLQETSNWLLSQQQADGSFQD 440 (767)
T ss_dssp -----------BCHHHHHHHHHHHHHTCSSS-SCCHHHHHHHHHHHHHTBCTTSCBCC
T ss_pred -----------CCchhHHHHHHHHHHHHhhc-CcchHHHHHHHHHHHHhhhhcccchh
Confidence 58999999999999876422 233 35678999999999999953
No 27
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=98.44 E-value=2.3e-06 Score=95.81 Aligned_cols=250 Identities=13% Similarity=0.048 Sum_probs=142.5
Q ss_pred ccccCCCcchhhhhhhhhHHHHHhhhHHhhcCCCC---Cc---ChHHHHHHHH-------HhccCCCCCCCCCCCCcccc
Q 020097 2 MMYESLPHHYQYQEINRITLAHFAISGLCLLGALD---RV---DKDAVSDWVL-------SLQAHPSNKADLTNGEFYGF 68 (331)
Q Consensus 2 ~~l~~lp~~~~~~d~~r~~~~y~~l~~L~lL~~~~---~~---~~~~~~~~i~-------~~q~~~~~~~~~~dg~~ggf 68 (331)
..|..+|..+..+-.+++.-..+++.-|+..+.-+ .. .+++++++|. ++|+ .||+|+.|
T Consensus 998 ~~L~~~PyGC~EQ~~s~~~P~~~~~~yL~~~~qw~~l~~~~~~~~~~~~~~i~~g~~r~l~~q~--------~dGsfs~w 1069 (1676)
T 3cu7_A 998 NILTHLPKGSAEAELMSVVPVFYVFHYLETGNHWNIFHSDPLIEKQKLKKKLKEGMLSIMSYRN--------ADYSYSVW 1069 (1676)
T ss_dssp CCSSSCCSCSSHHHHTTSHHHHHHHHHHHHTTCGGGCSSCHHHHHHHHHHHHHHHHHHGGGGBC--------TTSCBCSS
T ss_pred HHHhhCCCCcHHHHHHhhhhHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHhhccC--------CCCCcccc
Confidence 45778899999999999988888888777665411 11 2345555543 3443 68999999
Q ss_pred CCCCCCCCCCCCCCCccCCCCcHHHHHHHHHHHHHhCCCC--CcccHHHHHHHHHh-ccCCCCCCccccc-------CCc
Q 020097 69 HGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNF--ANIDSKSILTSMRN-LQQHDGSFMPIHF-------GAE 138 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~l~~Ty~Al~~L~~lg~~~--~~~~~~~~~~~l~~-~q~~dG~f~~~~~-------~~~ 138 (331)
.+.+ ++.|.|-+++..|.....-. +.-...++++||.+ .|.+||+|..... |+.
T Consensus 1070 ~~~~----------------~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~ 1133 (1676)
T 3cu7_A 1070 KGGS----------------ASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKENSQYQPIKLQGTL 1133 (1676)
T ss_dssp SSSC----------------CCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBCCCSSCCCCCCCSCH
T ss_pred CCCC----------------CcEEEeHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhCCCCCcccCCccccchhhcCCc
Confidence 4332 58999999999998876422 22223678999999 9999999953210 111
Q ss_pred ------cChhHHHHHHHHHHHhCCC-----CcccHHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHH--cCCc
Q 020097 139 ------KDLRFVYCAAAICFLLEDW-----SGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRL--MGFI 205 (331)
Q Consensus 139 ------~d~~~ty~al~~l~lL~~~-----~~~~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~l--lg~~ 205 (331)
.++..+.+++.+|...+.. ....++++++|+.+.... + .+. ++ -|+.+.++ .|..
T Consensus 1134 ~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~i~~a~~yL~~~~~~---~-------~~~-y~-~A~lA~Al~l~g~~ 1201 (1676)
T 3cu7_A 1134 PVEARENSLYLTAFTVIGIRKAFDICPLVKIDTALIKADNFLLENTLP---A-------QST-FT-LAISAYALSLGDKT 1201 (1676)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGGGSCCHHHHHHHHHHHHHHHHHHSS---C-------SCH-HH-HHHHHHHHTTSCTT
T ss_pred ccccccCccccHHHHHHHHHhcccccCCcccHHHHHHHHHHHHHhhhc---c-------CCH-HH-HHHHHHHHHhcCCc
Confidence 1343443444444332211 012456788999765321 1 111 11 24444343 4432
Q ss_pred cccccccCCCCCCCCHHHHHHHHHhcCCCCcc------ccCCCC-----C---C--CCcchhhHHHHHHHHhCCCCCCCH
Q 020097 206 EDNVLSKNTSSSIIDLPLLLSWCLQRQAADGG------FQGRAN-----K---P--SDTCYAFWIGSVLRMLGGYNLIDK 269 (331)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGG------f~gr~~-----k---~--~D~~yt~~~~a~L~lL~~~~~~~~ 269 (331)
. ...+++++.|.+....+|+ |..... + . .|+.-+-+++-++...+ +....
T Consensus 1202 ~------------~~a~~~l~~L~~~a~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ve~tayaLlall~~~--~~~~~ 1267 (1676)
T 3cu7_A 1202 H------------PQFRSIVSALKREALVKGNPPIYRFWKDNLQHKDSSVPNTGTARMVETTAYALLTSLNLK--DINYV 1267 (1676)
T ss_dssp C------------HHHHHHHHHHHHHCEEETTTTSEEECCSCSSCCSSCCCSCCCHHHHHHHHHHHHHHHHTT--CHHHH
T ss_pred h------------hhHHHHHHHHHhhhhhccCCccccCCCCCCCCccccccCCCccchHHHHHHHHHHHHhcC--ChhHH
Confidence 2 1146677888776553332 322110 0 0 12222333333333333 22335
Q ss_pred HHHHHHHHhccCCCCCcCCCCCCCCCHHHHHHHHHHHHh
Q 020097 270 EALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSL 308 (331)
Q Consensus 270 ~~~~~~L~~~Q~~~GGf~~~p~~~~D~~hT~~al~aLsl 308 (331)
.++++||.+.|+..|||..- ..|.+||-||+-
T Consensus 1268 ~~iv~wL~~qr~~~Gg~~ST-------QdT~~Al~AL~~ 1299 (1676)
T 3cu7_A 1268 NPVIKWLSEEQRYGGGFYST-------QDTINAIEGLTE 1299 (1676)
T ss_dssp HHHHHHHHHHSCSSSCCSTT-------TTHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCcccc-------HHHHHHHHHHHH
Confidence 78899999999999999854 345566666553
No 28
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=98.43 E-value=1.2e-06 Score=95.99 Aligned_cols=138 Identities=12% Similarity=-0.001 Sum_probs=87.7
Q ss_pred ccChhHHHHHHHHHHHhC---CCCcccHHH-------HHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccc
Q 020097 138 EKDLRFVYCAAAICFLLE---DWSGMDRER-------AKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIED 207 (331)
Q Consensus 138 ~~d~~~ty~al~~l~lL~---~~~~~~~~~-------~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~ 207 (331)
|.-|...+-.+.++..|. .++....++ ++++++++|++||||+..++..++...|..++.+|..+.+...
T Consensus 840 EQ~~s~~~p~~~~~~yl~~~~~~~~~~~~~~~~~i~~g~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a~~~~~ 919 (1325)
T 2pn5_A 840 EQNMVKFVPNILVLDYLHAIGSKEQHLIDKATNLLRQGYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKYIS 919 (1325)
T ss_dssp TGGGGGTHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHTTTCS
T ss_pred hHHHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHHHHhhEE
Confidence 333444444444444453 343333334 4556699999999999999999999999999999999865421
Q ss_pred cccccCCCCCCCCHHHHHHHHHhcCCCCccccCCCC-------CCCCcch--hhHHHHHHHHhCCC---CCCCHHHHHHH
Q 020097 208 NVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRAN-------KPSDTCY--AFWIGSVLRMLGGY---NLIDKEALRGF 275 (331)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~-------k~~D~~y--t~~~~a~L~lL~~~---~~~~~~~~~~~ 275 (331)
.+ ....++++++||.++|.+||.|.++.. +..+.+. +.+++.+|.-.+.. .....+++++|
T Consensus 920 ~v-------~~~~l~~a~~~L~~~q~~dG~f~~~~~~~~~~~~g~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~ 992 (1325)
T 2pn5_A 920 DI-------DAAMVEKALDWLASKQHFSGRFDKAGAEYHKEMQGGLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTY 992 (1325)
T ss_dssp CS-------CHHHHHHHHHHHHHTCCTTSCCCCCSCCSCHHHHCCSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHH
T ss_pred cC-------CHHHHHHHHHHHHhhhccCCCccccccccChhhcCcccCCccccHHHHHHHhhCcccccccHHHHHHHHHH
Confidence 00 012367899999999999999987632 1223343 44444443322211 11235688999
Q ss_pred HHhccCC
Q 020097 276 LLTCQSQ 282 (331)
Q Consensus 276 L~~~Q~~ 282 (331)
|.+.|+.
T Consensus 993 L~~~~~~ 999 (1325)
T 2pn5_A 993 LSNQFGS 999 (1325)
T ss_dssp HHHHGGG
T ss_pred HHHhhcc
Confidence 9988764
No 29
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=98.26 E-value=6.7e-06 Score=86.90 Aligned_cols=176 Identities=15% Similarity=0.064 Sum_probs=106.6
Q ss_pred HHHHHHHhccCCCCCCcccccCCccChhHHHHHHHHHHHhCCCC---cccHHHHHHHHHh-cCCCCCCcccCCC------
Q 020097 115 SILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWS---GMDRERAKAYILN-CQSYDGGFGLTPG------ 184 (331)
Q Consensus 115 ~~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~---~~~~~~~~~~I~~-~Q~~dGGFg~~p~------ 184 (331)
..++.+.+.|++||||..+. ++.++.+.|-.++..+..+.... ....+++++||.+ .|.+||+|.....
T Consensus 303 ~g~~rll~~Q~~DGsfs~w~-~~~~s~wlTAyv~~~l~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m 381 (915)
T 2hr0_B 303 KGYTQQLAFRQPSSAFAAFV-KRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEM 381 (915)
T ss_dssp HHHHHHGGGCCTTTCCBSSS-SSCBCHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSCC
T ss_pred HHHHHHHHhhcCCCCccccC-CCCCcceehHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccCccccchhh
Confidence 34566888999999998764 35667777767777776665332 2346889999995 9999999965321
Q ss_pred --C-----CCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCccccCCCCCCCCcchhh-HHHH
Q 020097 185 --S-----ESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAF-WIGS 256 (331)
Q Consensus 185 --~-----esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~~yt~-~~~a 256 (331)
+ ++....|..++.+|...|.....-.+ .....+.++++||.+++... +.-|+- ....
T Consensus 382 ~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~----~~~~~i~~A~~yL~~~~~~~-----------~~~y~~a~lay 446 (915)
T 2hr0_B 382 IGGLRNNNEKDMALTAFVLISLQEAKDICEEQVN----SLPGSITKAGDFLEANYMNL-----------QRSYTVAIAGY 446 (915)
T ss_dssp CCSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCT----THHHHHHHHHHHHHHHGGGC-----------CSHHHHHHHHH
T ss_pred cCCccCccccccccHHHHHHHHHhcccccccCcc----cchHHHHHHHHHHHHhhhcc-----------CCHHHHHHHHH
Confidence 1 23455677888888877653100000 00123668999999876421 122322 2222
Q ss_pred HHHHhCCCCCCCHHHHHHHHHhccCCCCC-cCCCCCCCCCHHHHHHHHHHHHhcCC
Q 020097 257 VLRMLGGYNLIDKEALRGFLLTCQSQYGG-FGKCPGDLPDLYHSFYGYTAFSLLEE 311 (331)
Q Consensus 257 ~L~lL~~~~~~~~~~~~~~L~~~Q~~~GG-f~~~p~~~~D~~hT~~al~aLsll~~ 311 (331)
+|.+.|.. .+.+++.|..+.. +|. |....+...++..|.|+|.+|...+.
T Consensus 447 AL~l~g~~----a~~~l~~L~~~~~-~~~~w~~~~~~~~~ve~TayaLlall~~~~ 497 (915)
T 2hr0_B 447 ALAQMGRL----KGPLLNKFLTTAK-DKNRWEDPGKQLYNVEATSYALLALLQLKD 497 (915)
T ss_dssp HHHTTTCC----CHHHHHHHHHTSB-TTTBCCCSSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCh----HHHHHHHHHhhcc-CCCCCCCCCCCccchHHHHHHHHHHHhcCC
Confidence 44444532 4566666665443 333 33321112378899999999988765
No 30
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=98.24 E-value=1.2e-06 Score=81.13 Aligned_cols=167 Identities=10% Similarity=-0.005 Sum_probs=101.1
Q ss_pred HHHHHHHhccCCCCCCccccc------------CCccChhHHHHHHHHHHHhCCC--C---cccHHHHHHHHHhcCCCCC
Q 020097 115 SILTSMRNLQQHDGSFMPIHF------------GAEKDLRFVYCAAAICFLLEDW--S---GMDRERAKAYILNCQSYDG 177 (331)
Q Consensus 115 ~~~~~l~~~q~~dG~f~~~~~------------~~~~d~~~ty~al~~l~lL~~~--~---~~~~~~~~~~I~~~Q~~dG 177 (331)
.+.+-|...|+++|||..... ....|...|..++..|.-+... + ....+|+++||++.|.+||
T Consensus 35 ~~Ad~~l~~Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nG 114 (332)
T 1gxm_A 35 SRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTG 114 (332)
T ss_dssp GGHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHcCcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCC
Confidence 357888888999999965211 1235666777776666544211 1 2345799999999999999
Q ss_pred CcccC-CCCC--------CChhhHHHHHHHHHHcCCccccc-----cccCCCCCCCCHHHHHHHHHhcCCCCccccCCCC
Q 020097 178 GFGLT-PGSE--------SHGGGTYCAVASLRLMGFIEDNV-----LSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRAN 243 (331)
Q Consensus 178 GFg~~-p~~e--------sh~~~Ty~AlaaL~llg~~~~~~-----~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~ 243 (331)
||+.. |... +| ..|..+|..|..++.....+ +++........++++++||++.|.++|||.++.+
T Consensus 115 GWpqFdpd~~~Yl~~IpFnD-DvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw~g~Wg 193 (332)
T 1gxm_A 115 ALPQFYPLKGGYSDHATFND-NGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVWC 193 (332)
T ss_dssp CCBSEESCCSGGGGSEECGG-GHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCC
T ss_pred CccccCCCcccccccCCcch-HHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCCcCeec
Confidence 99987 2210 11 24677788887775311100 0000000023578999999999999999998765
Q ss_pred CC--CCcch----------hhHHH----HHHHHhCCCCCC----CHHHHHHHHHhccCC
Q 020097 244 KP--SDTCY----------AFWIG----SVLRMLGGYNLI----DKEALRGFLLTCQSQ 282 (331)
Q Consensus 244 k~--~D~~y----------t~~~~----a~L~lL~~~~~~----~~~~~~~~L~~~Q~~ 282 (331)
-- ..|.. +.+++ ....+.+..... -++++++||.++|++
T Consensus 194 ~qydygT~~Pa~ARayE~psL~~~es~giv~~LM~~~~~~~v~~aI~~Av~WL~~~q~~ 252 (332)
T 1gxm_A 194 AQHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQTAEIEQAVRAGVAWFNSPRTY 252 (332)
T ss_dssp SEECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCCCHHHHHHHHHHHHHHTCTTTS
T ss_pred cccccccccccccccccccchhHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcccc
Confidence 31 22222 22222 222233322200 168899999999995
No 31
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=98.17 E-value=9.5e-06 Score=89.46 Aligned_cols=181 Identities=10% Similarity=-0.006 Sum_probs=114.0
Q ss_pred HHHHHHHHhccCCCCCCccccc-C--CccChhHHHHHHHHHHHhCCC---CcccHHHHHHHHHhcCCCCCCcccCC----
Q 020097 114 KSILTSMRNLQQHDGSFMPIHF-G--AEKDLRFVYCAAAICFLLEDW---SGMDRERAKAYILNCQSYDGGFGLTP---- 183 (331)
Q Consensus 114 ~~~~~~l~~~q~~dG~f~~~~~-~--~~~d~~~ty~al~~l~lL~~~---~~~~~~~~~~~I~~~Q~~dGGFg~~p---- 183 (331)
++.++++.+.|++||+|..+.. . +..+.+.|-.++..+..+... +....+++++||.+.|++||+|....
T Consensus 986 ~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~~ 1065 (1451)
T 4acq_A 986 NTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLLN 1065 (1451)
T ss_dssp HHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECCCCCCSC
T ss_pred HHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccCCcccccCcccc
Confidence 3567888899999999986531 1 346777777777777766532 34457899999999999999997431
Q ss_pred ----C-CCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCccccCCCCCCCCcchhhHHHHHH
Q 020097 184 ----G-SESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVL 258 (331)
Q Consensus 184 ----~-~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~~yt~~~~a~L 258 (331)
| .+.+...|..++.+|...|.... ...++++++||.++.. .+... ....|+.....+..+|
T Consensus 1066 ~~m~gg~~~~~~lTAyvl~aL~~~g~~~~----------~~~i~~A~~~L~~~~~---~~~~~-~~~~~~y~~AllAyAl 1131 (1451)
T 4acq_A 1066 NAIKGGVEDEVTLSAYITIALLEIPLTVT----------HPVVRNALFCLESAWK---TAQEG-DHGSHVYTKALLAYAF 1131 (1451)
T ss_dssp GGGCCSCSCHHHHHHHHHHHHHHTTCCTT----------CHHHHHHHHHHHHHHH---HHTSS-CSSSTHHHHHHHHHHH
T ss_pred hhhcCCCCCCccchHHHHHHHHHcCCCCC----------CHHHHHHHHHHHHhhh---hcccc-cccCChHHHHHHHHHH
Confidence 1 13456679999999999885421 2347899999987521 11100 0011232233445566
Q ss_pred HHhCCCCCCCHHHHHHHHHhccCCCCCcCCCCC----------------CCCCHHHHHHHHHHHHhcC
Q 020097 259 RMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPG----------------DLPDLYHSFYGYTAFSLLE 310 (331)
Q Consensus 259 ~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~~~p~----------------~~~D~~hT~~al~aLsll~ 310 (331)
++.|..+ ..+.+.+-|......+||...+.. ...++..|.|+|.+|-.++
T Consensus 1132 al~g~~~--~~~~~l~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~s~~vE~TayaLLall~~~ 1197 (1451)
T 4acq_A 1132 ALAGNQD--KRKEVLKSLNEEAVKKDNSVHWERPQKPKAPVGHFYEPQAPSAEVEMTSYVLLAYLTAQ 1197 (1451)
T ss_dssp HHHTCHH--HHHHHHHHHHHHCCBCSSCBCCCCCCCSSSCSSSTTCCCTTGGGGTHHHHHHHHHHCCS
T ss_pred HhcCChh--HHHHHHHHHHHHhhccCCceecCCCCCCccccccccccCCchHHHHHHHHHHHHHhhcc
Confidence 6777421 123455556555555566322211 1247889999999998775
No 32
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=98.05 E-value=3.2e-06 Score=80.35 Aligned_cols=119 Identities=13% Similarity=0.167 Sum_probs=71.4
Q ss_pred hHHHHHHHHHhccCCCCCCCCCCCCccccCCCCCC---CCCCCCCCCccCCCCcHHHHHHHHHHHHHhCCC---CCccc-
Q 020097 40 KDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSS---QLHPDDNGVLMHNGSNLASTYCALAILKAVGYN---FANID- 112 (331)
Q Consensus 40 ~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~---~~~~~~~~~~~~~~~~l~~Ty~Al~~L~~lg~~---~~~~~- 112 (331)
.++.++||+++|. +||||+.|...+.. .+|++ | ..|-..|..|..++.. +.-++
T Consensus 177 i~Rgl~wlL~mQ~--------~nGGWpqFdpdn~~y~~~IpFn-------D----Dvt~rvle~L~~~~~~~~~~~~~~~ 237 (408)
T 1r76_A 177 ALKGIEYLLASQF--------PNGGWPQVWPLEGGYHDAITYN-------D----DALVHVAELLSDIAAGRDGFGFVPP 237 (408)
T ss_dssp HHHHHHHHHHHSC--------TTSCCBSBSSCCCGGGGSEECG-------G----GHHHHHHHHHHHHHHTCTTCTTSCH
T ss_pred HHHHHHHHHHccC--------CCCCCcCcCccccccccCCCcC-------c----HHHHHHHHHHHHHHhccCcccccch
Confidence 3578999999997 68999999876631 11332 2 4466667666666541 21111
Q ss_pred ---------HHHHHHHHHhccCC-CCCCcccccCCccChhH-------------HHHH---H-HHHHHhCCCCcc-----
Q 020097 113 ---------SKSILTSMRNLQQH-DGSFMPIHFGAEKDLRF-------------VYCA---A-AICFLLEDWSGM----- 160 (331)
Q Consensus 113 ---------~~~~~~~l~~~q~~-dG~f~~~~~~~~~d~~~-------------ty~a---l-~~l~lL~~~~~~----- 160 (331)
.++.++||++.|.+ ||+|.. |+-. .... +.++ + .++.++....+.
T Consensus 238 ~~~~~~~~av~Rgi~~Ll~~Qe~~dGsw~r--Wg~q-Y~ygT~~Pa~aRsYE~psLs~~esa~il~~LM~~~~~~~~~~~ 314 (408)
T 1r76_A 238 AIRTRALEATNAAIHCIVETQVVQDGKRLG--WGQQ-HDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQ 314 (408)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCEETTEECC--CCSE-ECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHhhcccCCcccc--hhcc-cccccCcchhhhccCCccccHHHHHHHHHHHccCCCCCHHHHH
Confidence 25789999999999 999863 3211 0011 1122 2 222333332211
Q ss_pred cHHHHHHHHHhcCCCCCCcc
Q 020097 161 DRERAKAYILNCQSYDGGFG 180 (331)
Q Consensus 161 ~~~~~~~~I~~~Q~~dGGFg 180 (331)
.++++++||.++|++||+|-
T Consensus 315 aI~~Av~WL~s~Q~~dg~w~ 334 (408)
T 1r76_A 315 AIRGGVAWLNTSVIRDRAWV 334 (408)
T ss_dssp HHHHHHHHHHHSCCCC----
T ss_pred HHHHHHHHHHHhhcCCCcee
Confidence 37899999999999999987
No 33
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=98.05 E-value=8.3e-06 Score=77.89 Aligned_cols=126 Identities=13% Similarity=-0.050 Sum_probs=85.5
Q ss_pred cHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhccCCCCCCcccccCCccChhHHHHHHHHHHHhCCCC-----cccHHH
Q 020097 90 NLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWS-----GMDRER 164 (331)
Q Consensus 90 ~l~~Ty~Al~~L~~lg~~~~~~~~~~~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~-----~~~~~~ 164 (331)
+.-..-.++.+|..-|.++. +..++.|...|. +++|. .|+..++..+-.|+.+|.-++... ...+++
T Consensus 135 n~Yq~sL~vLALC~~g~~v~----~~~v~~Ll~~~~-~~~~~---~g~~~sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~ 206 (414)
T 2bb6_A 135 SYYQYSLGILALCVHQKRVH----DSVVGKLLYAVE-HKPHL---LQDHVSVDTMAMAGMAFSCLELSNLNPKQRNRINL 206 (414)
T ss_dssp CHHHHHHHHHHHHHTTCCCC----HHHHHHHHHHHH-SSSCS---CCTTTHHHHHHHHHHHHHHHHHHTSCGGGHHHHHH
T ss_pred chHHHHHHHHHHHHcCCCcc----HHHHHHHHHHhh-ccCcC---CCCcccccHHHHHHHHHHHHhhcCCCcchHHHHHH
Confidence 44455556666667776652 345555556554 45664 234457788877777777665311 112455
Q ss_pred HH----HHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCcccc
Q 020097 165 AK----AYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQ 239 (331)
Q Consensus 165 ~~----~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~ 239 (331)
++ ++|++.|++||+|| +..+|..|+.+|...+..+.+. ..+..++++||++ |.+||+|.
T Consensus 207 al~~l~~~l~~~Q~~dG~FG-------N~~ST~lA~QAL~~~~~~~~~~--------~w~~~~a~~~Ll~-q~~dG~F~ 269 (414)
T 2bb6_A 207 ALKRVQEKILKAQTPEGYFG-------NVYSTPLALQLLMGSLRPSVEL--------GTACLKAKAALQA-SLQHKTFQ 269 (414)
T ss_dssp HHHHHHHHHHHTBCTTSCBS-------STTTHHHHHHHHTTCSSCCHHH--------HHHHHHHHHHHHH-HHTTTCCC
T ss_pred HHHHHHHHHHHhhcCCCCcc-------chhhHHHHHHHHHhcCCCcccc--------cchHHHHHHHHHH-hccCCCCC
Confidence 55 88889999999998 3667999999999998754220 1257789999999 99999997
No 34
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=98.00 E-value=7.9e-07 Score=98.71 Aligned_cols=250 Identities=12% Similarity=0.060 Sum_probs=0.0
Q ss_pred cccCCCcchhhhhhhhhHHHHHhhhHHhhcCCCCC---cChHHHHHHHHH-hccCCCCCCCCCCCCccccCCCCCCCCCC
Q 020097 3 MYESLPHHYQYQEINRITLAHFAISGLCLLGALDR---VDKDAVSDWVLS-LQAHPSNKADLTNGEFYGFHGSPSSQLHP 78 (331)
Q Consensus 3 ~l~~lp~~~~~~d~~r~~~~y~~l~~L~lL~~~~~---~~~~~~~~~i~~-~q~~~~~~~~~~dg~~ggf~~~~~~~~~~ 78 (331)
.|..+|..+..|--+++.-..+++.-|+..+.... ..+++++++|.. .|. -...+..||+|+.|.+.+
T Consensus 985 ~Ll~~PyGCgEQnms~~~P~v~v~~yL~~t~q~~~~~~e~~~ka~~~i~~Gyqr--~l~yq~~DGsfs~w~~~~------ 1056 (1642)
T 3prx_B 985 HLIITPSGCGEQNMIRMAAPVIATYYLDTTEQWETLGINRRTEAVNQIVTGYAQ--QMVYKKADHSYAAFTNRA------ 1056 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHhhhccccccChhHHHHHHHHHHHHHHH--HHHhcCCCCCeecCCCCC------
Confidence 46678888888888899888888888887765432 234455555542 110 011223789999986532
Q ss_pred CCCCCccCCCCcHHHHHHHHHHHHHhCCC---CCcccHHHHHHHHHh-ccCCCCCCcccc-------cCC----ccChhH
Q 020097 79 DDNGVLMHNGSNLASTYCALAILKAVGYN---FANIDSKSILTSMRN-LQQHDGSFMPIH-------FGA----EKDLRF 143 (331)
Q Consensus 79 ~~~~~~~~~~~~l~~Ty~Al~~L~~lg~~---~~~~~~~~~~~~l~~-~q~~dG~f~~~~-------~~~----~~d~~~ 143 (331)
++.|-|.+++.+|..-..- ++.-...++++||.+ .|++||+|.... .|+ +.++..
T Consensus 1057 ----------~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~~~v~~~~m~Gg~~~~~~~~~l 1126 (1642)
T 3prx_B 1057 ----------SSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKENAPVLSGTMQGGIQGAEEEVYL 1126 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------CccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCcccccccccchhccCCccCCCCcccc
Confidence 5799999999998865532 322224678999998 899999995421 121 223443
Q ss_pred HHHHHHHHHHhCCC-------CcccHHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHH--HHHcCCccccccccCC
Q 020097 144 VYCAAAICFLLEDW-------SGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVAS--LRLMGFIEDNVLSKNT 214 (331)
Q Consensus 144 ty~al~~l~lL~~~-------~~~~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~Alaa--L~llg~~~~~~~~~~~ 214 (331)
|-+++.+|.-.+.. ....++++++||.+.... . ..|+ | -||.+ |++.+....+...
T Consensus 1127 TA~vliaL~e~~~~~~~~~~~~~~~i~~a~~~L~~~~~~---~-~~~Y-------~-~Ai~aYAl~l~~~~~~~~l~--- 1191 (1642)
T 3prx_B 1127 TAFILVALLESKTICNDYVNSLDSSIKKATNYLLKKYEK---L-QRPY-------T-TALTAYALAAADQLNDDRVL--- 1191 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHhcccccccccccchHHHHHHHHHHHHhhhc---C-CCHH-------H-HHHHHHHHHhcCCchHHHHH---
Confidence 32222222211111 123567888999754211 0 1111 1 13332 3334433211000
Q ss_pred CCCCCCHHHHHHHHHhcCCCCccccCCCCC-CCCcchhhHHHHHHHHhCCCCCCCHHHHHHHHHhccCCCCCcCCCCCCC
Q 020097 215 SSSIIDLPLLLSWCLQRQAADGGFQGRANK-PSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPGDL 293 (331)
Q Consensus 215 ~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k-~~D~~yt~~~~a~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~~~p~~~ 293 (331)
.........|- ++++ ..++.-|-+++-++-.++ ++.....+++||...|+..|||+.-
T Consensus 1192 ---~l~~~~~~~W~------------~~~~~~~~VE~TaYaLLa~l~~~--~~~~a~~iv~WL~~qr~~~Ggf~ST---- 1250 (1642)
T 3prx_B 1192 ---MAASTGRDHWE------------EYNAHTHNIEGTSYALLALLKMK--KFDQTGPIVRWLTDQNFYGETYGQT---- 1250 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---HHHhcCCCCCC------------CCCCchHHHHHHHHHHHHHhccC--chhhHHHHHHHHHHhccCCCcccCc----
Confidence 00000122331 1111 123333333333332233 3345678999999999999999954
Q ss_pred CCHHHHHHHHHHHHhc
Q 020097 294 PDLYHSFYGYTAFSLL 309 (331)
Q Consensus 294 ~D~~hT~~al~aLsll 309 (331)
.-|..||-||+--
T Consensus 1251 ---QdTvvaLqALa~Y 1263 (1642)
T 3prx_B 1251 ---QATVMAFQALAEY 1263 (1642)
T ss_dssp ----------------
T ss_pred ---HHHHHHHHHHHHH
Confidence 3566777777644
No 35
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=97.85 E-value=4.3e-05 Score=72.94 Aligned_cols=126 Identities=11% Similarity=-0.055 Sum_probs=84.9
Q ss_pred HHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHH----HHHHhcCCCCcc
Q 020097 162 RERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLL----SWCLQRQAADGG 237 (331)
Q Consensus 162 ~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~----~wL~~~Q~~dGG 237 (331)
.++.+..++..|. +++|.. +...++-.|.-|+.||..+++.... .. ....+++++ ++|.+.|.+||+
T Consensus 154 ~~~~v~~Ll~~~~-~~~~~~--g~~~sVDT~AMA~lAL~C~~~~~~~-~~-----~~~~i~~al~~l~~~l~~~Q~~dG~ 224 (414)
T 2bb6_A 154 HDSVVGKLLYAVE-HKPHLL--QDHVSVDTMAMAGMAFSCLELSNLN-PK-----QRNRINLALKRVQEKILKAQTPEGY 224 (414)
T ss_dssp CHHHHHHHHHHHH-SSSCSC--CTTTHHHHHHHHHHHHHHHHHHTSC-GG-----GHHHHHHHHHHHHHHHHHTBCTTSC
T ss_pred cHHHHHHHHHHhh-ccCcCC--CCcccccHHHHHHHHHHHHhhcCCC-cc-----hHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 3445566666555 456642 2234677888889998888753200 00 011244555 888899999999
Q ss_pred ccCCCCCCCCcchhhHHHHHHHHhCCCCC---CCHHHHHHHHHhccCCCCCcCCCCCCCCCHHHHHHHHHHHHhcCC
Q 020097 238 FQGRANKPSDTCYAFWIGSVLRMLGGYNL---IDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEE 311 (331)
Q Consensus 238 f~gr~~k~~D~~yt~~~~a~L~lL~~~~~---~~~~~~~~~L~~~Q~~~GGf~~~p~~~~D~~hT~~al~aLsll~~ 311 (331)
|. +...|-+|+-+|...+...- ++..+++++|++ |..+|+|+ ++..|+-+|.+|.=-.+
T Consensus 225 FG-------N~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~~dG~F~-------np~ataQ~lpaL~gkty 286 (414)
T 2bb6_A 225 FG-------NVYSTPLALQLLMGSLRPSVELGTACLKAKAALQA-SLQHKTFQ-------NPLMISQLLPVLNQKSY 286 (414)
T ss_dssp BS-------STTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HHTTTCCC-------SHHHHHHHHHHTTTCCG
T ss_pred cc-------chhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH-hccCCCCC-------ChHHHHHHHHHhcCCCc
Confidence 95 35557788888887775321 366789999998 99999997 67888888888874333
No 36
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=97.68 E-value=1.7e-05 Score=73.31 Aligned_cols=115 Identities=11% Similarity=0.125 Sum_probs=72.8
Q ss_pred hHHHHHHHHHhccCCCCCCCCCCCCccccCCCCCC---CCCCCCCCCccCCCCcHHHHHHHHHHHHHhCC---CCC----
Q 020097 40 KDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSS---QLHPDDNGVLMHNGSNLASTYCALAILKAVGY---NFA---- 109 (331)
Q Consensus 40 ~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~---~~~~~~~~~~~~~~~~l~~Ty~Al~~L~~lg~---~~~---- 109 (331)
.++.++||+++|. +||||+.|...... .+|++ | ..|-..|..|..++. +++
T Consensus 99 i~Rgl~wlL~mQ~--------~nGGWpqFdpd~~~Yl~~IpFn-------D----DvtarvLelL~~~~~~~~~~~~~~~ 159 (332)
T 1gxm_A 99 VRKAANFLVNSQY--------STGALPQFYPLKGGYSDHATFN-------D----NGMAYALTVLDFAANKRAPFDTDVF 159 (332)
T ss_dssp HHHHHHHHHHHCC--------TTSCCBSEESCCSGGGGSEECG-------G----GHHHHHHHHHHHHHTTCTTSCSTTS
T ss_pred HHHHHHHHHhccC--------CCCCccccCCCcccccccCCcc-------h----HHHHHHHHHHHHHHhccCCcccccc
Confidence 3678999999997 68999999876421 12332 2 457788888888753 121
Q ss_pred ------c--ccHHHHHHHHHhccCCCCCCcccccCCccChhHHH-------------H---HHHHHHHh-CCCCcc----
Q 020097 110 ------N--IDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVY-------------C---AAAICFLL-EDWSGM---- 160 (331)
Q Consensus 110 ------~--~~~~~~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty-------------~---al~~l~lL-~~~~~~---- 160 (331)
+ .-.++.++||++.|.++|||.. .|+.. +...|+ + ++.++..| +.....
T Consensus 160 ~~~~~~~~~~av~Rgid~Llk~Qe~dggw~g-~Wg~q-ydygT~~Pa~ARayE~psL~~~es~giv~~LM~~~~~~~v~~ 237 (332)
T 1gxm_A 160 SDNDRTRFKTAVTKGTDYILKAQWKQNGVLT-VWCAQ-HGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQTAEIEQ 237 (332)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSCEETTEEC-CCCSE-ECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCCCHHHHH
T ss_pred ccchhhhhHHHHHHHHHHHHHhhCccCCCcC-eeccc-cccccccccccccccccchhHHHHHHHHHHhccCCCCHHHHH
Confidence 1 1125789999999999998863 45322 112221 2 23333333 322211
Q ss_pred cHHHHHHHHHhcCCC
Q 020097 161 DRERAKAYILNCQSY 175 (331)
Q Consensus 161 ~~~~~~~~I~~~Q~~ 175 (331)
.++++++|+.++|++
T Consensus 238 aI~~Av~WL~~~q~~ 252 (332)
T 1gxm_A 238 AVRAGVAWFNSPRTY 252 (332)
T ss_dssp HHHHHHHHHTCTTTS
T ss_pred HHHHHHHHHHhcccc
Confidence 378999999999995
No 37
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=97.64 E-value=0.00075 Score=75.56 Aligned_cols=202 Identities=12% Similarity=0.068 Sum_probs=118.8
Q ss_pred CcHHHHHHHHHHHHHhCCCCC---cccHHHHHHH-------HHhccCCCCCCcccccCCccChhHHHHHHHHHHHhCCC-
Q 020097 89 SNLASTYCALAILKAVGYNFA---NIDSKSILTS-------MRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDW- 157 (331)
Q Consensus 89 ~~l~~Ty~Al~~L~~lg~~~~---~~~~~~~~~~-------l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~- 157 (331)
+.+....++...|...+. +. .-.+++++++ +.+.|++||+|+.+. +++.+++.|-+++..+..+...
T Consensus 1015 s~~~P~~~~~~yL~~~~q-~~~~~~~~~~~~~~~i~~g~~r~l~~q~~dGsfs~w~-~~~~s~wLTAyv~~~l~~A~~~~ 1092 (1661)
T 2b39_A 1015 IGMTPTVIAVHYLDSTDQ-WEKFGLEKRQESLELIRKGYTQQLAFRQKSSAYAAFQ-YRPPSTWLTAYVVKVFALAANLI 1092 (1661)
T ss_dssp GGTHHHHHHHHHHHHHTC-GGGSCSHHHHHHHHHHHHHHHHHHTTBCTTSCBCSST-TSCCCHHHHHHHHHHHHHHTTTS
T ss_pred hhcccHHHHHHHHHhcCc-ccccCHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC-CCCCchhhhHHHHHHHHhhhhcc
Confidence 455556666666666552 21 1123344444 556789999998764 3567888888888888777643
Q ss_pred --CcccHHHHHHHHHh-cCCCCCCcccCC--------C-----CCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCH
Q 020097 158 --SGMDRERAKAYILN-CQSYDGGFGLTP--------G-----SESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDL 221 (331)
Q Consensus 158 --~~~~~~~~~~~I~~-~Q~~dGGFg~~p--------~-----~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~ 221 (331)
+....+++++||.+ .|++||.|.... + .+++...|..++.+|...+.......+ .....+
T Consensus 1093 ~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~----~~~~~i 1168 (1661)
T 2b39_A 1093 AIDSKDLCETVKWLILEKQKPDGIFQEDGPVIHQEMIGGFRDTREKDVSLTAFVLIALHEAKDICEAQVN----SLGRSI 1168 (1661)
T ss_dssp CCCHHHHHHHHHHHHHHTBCTTSCBCCCSCCCCTTSCCCTTCCTTSSHHHHHHHHHHHHHTTTTTTTTCS----SHHHHH
T ss_pred cCCHHHHHHHHHHhhHhhCCCCCccccccceechhhcCCccccccCccccHHHHHHHHHhccccccccCc----chhHHH
Confidence 23345889999995 999999996431 1 223566788888888876643100000 001235
Q ss_pred HHHHHHHHhcCCCCccccCCCCCCCCcchhh-HHHHHHHHhCCCCCCCHHHHHHHHHhccCCCCCcCCCCCCCCCHHHHH
Q 020097 222 PLLLSWCLQRQAADGGFQGRANKPSDTCYAF-WIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSF 300 (331)
Q Consensus 222 ~~~~~wL~~~Q~~dGGf~gr~~k~~D~~yt~-~~~a~L~lL~~~~~~~~~~~~~~L~~~Q~~~GGf~~~p~~~~D~~hT~ 300 (331)
.++++||.++... ..+ -|+- .+..+|.+.|.. .+.+++.|........-|....+...|+..|.
T Consensus 1169 ~~a~~yL~~~~~~----------~~~-~y~~A~layAL~l~g~~----a~~~l~~L~~~~~~~~~W~~~~~~~~~vE~ta 1233 (1661)
T 2b39_A 1169 AKAGDFLENHYRE----------LRR-PYTVAIAAYALALLGKL----EGDRLTKFLNTAKEKNRWEEPNQKLYNVEATS 1233 (1661)
T ss_dssp HHHHHHHHHHTTT----------CCS-HHHHHHHHHHHHHTTCC----CHHHHHHHHHHSBTTTBCCCSSCHHHHHHHHH
T ss_pred HHHHHHHHHhhhc----------cCC-HHHHHHHHHHHHHcCCc----HHHHHHHHHhhccCCCCCCCCCCCcchHHHHH
Confidence 6799999875321 112 2332 333455566643 35666666554432222332212223778899
Q ss_pred HHHHHHHhcCC
Q 020097 301 YGYTAFSLLEE 311 (331)
Q Consensus 301 ~al~aLsll~~ 311 (331)
|+|.++...+.
T Consensus 1234 yaLlall~~~~ 1244 (1661)
T 2b39_A 1234 YALLALLARKD 1244 (1661)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHhcCC
Confidence 99999887664
No 38
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=97.55 E-value=0.00019 Score=68.13 Aligned_cols=115 Identities=15% Similarity=0.005 Sum_probs=78.7
Q ss_pred HHHHHHHH--hCCCCCcccHHHHHHHHHhccCCCCCCcccccCCccChhHHHHHHHHHHHhCC---CC---------ccc
Q 020097 96 CALAILKA--VGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLED---WS---------GMD 161 (331)
Q Consensus 96 ~Al~~L~~--lg~~~~~~~~~~~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~---~~---------~~~ 161 (331)
+|+.+|++ -|..+ ++..++-|...++.||+.. ++..+-.|+.++.-+.. .. ...
T Consensus 117 ~sL~vLALC~~~~~v----~~~~v~kLl~~~~~~g~~~--------sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~~a 184 (399)
T 2pmv_A 117 PSLAILALCQKNSEA----TLPIAVRFAKTLLANSSPF--------NVDTGAMATLALTCMYNKIPVGSEEGYRSLFGQV 184 (399)
T ss_dssp HHHHHHHHHHHCHHH----HHHHHHHHHHHHHHCCSCC--------CHHHHHHHHHHHHHHHTBCCTTCCSSHHHHHHHH
T ss_pred HHHHHHHHHhcCCCC----CHHHHHHHHHHHHccCCcc--------cchHHHHHHHHHHHHhhccccccchhhHHHHHHH
Confidence 34444444 45433 4567777777777664321 44555555555544443 11 112
Q ss_pred HHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCcccc
Q 020097 162 RERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQ 239 (331)
Q Consensus 162 ~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~ 239 (331)
+++++++|++.|++||+|| +..+|.-|+.+|...+..+. ..-+..++++||++ |..+|+|.
T Consensus 185 i~~~~~~l~~~q~~dG~fG-------n~yST~LA~QAL~~~~~~~~---------~~W~c~~al~~l~~-q~~~G~F~ 245 (399)
T 2pmv_A 185 LKDIVEKISMKIKDNGIIG-------DIYSTGLAMQALSVTPEPSK---------KEWNCKKTTDMILN-EIKQGKFH 245 (399)
T ss_dssp HHHHHHHHTTSBCTTSCBS-------SHHHHHHHHHHHHHCSSCCS---------SCCCHHHHHHHHHH-HHTTTTTC
T ss_pred HHHHHHHHHHhhcCCCccc-------ccccHHHHHHHHHhcCCCcc---------ccccHHHHHHHHHH-HhhCCCcC
Confidence 4678899999999999998 58899999999999986531 12389999999999 88999997
No 39
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=97.53 E-value=0.0044 Score=64.10 Aligned_cols=144 Identities=13% Similarity=0.086 Sum_probs=87.8
Q ss_pred CCcHHHHHHHHHHHHHhCCC--CCcccHHHHHHH-------HHhccCCCCCCcccccCCccChhHHHHHHHHHHHhCCCC
Q 020097 88 GSNLASTYCALAILKAVGYN--FANIDSKSILTS-------MRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWS 158 (331)
Q Consensus 88 ~~~l~~Ty~Al~~L~~lg~~--~~~~~~~~~~~~-------l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~ 158 (331)
.+.+..+.+++..|...+.- +..-.++++.++ +.+.|++||+|+.+. ++..+++.|-+++.++..+....
T Consensus 336 ms~~~p~i~v~~yl~~t~q~~~l~~~~~~~a~~~l~~gyqrll~~q~~DGsfs~w~-~~~~s~wLTAyV~~~l~~A~~~i 414 (767)
T 4fxk_B 336 MIYLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWL-SRDSSTWLTAFVLKVLSLAQEQV 414 (767)
T ss_dssp GGGTHHHHHHHHHHHHTCTTTTSCSSHHHHHHHHHHHHHHHHTTTBCTTSCBBSSS-SSCBCHHHHHHHHHHHHHTCSSS
T ss_pred HHhhhhhhhHHHHHHhhhhhcccCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCC-CCCCCchhHHHHHHHHHHHHhhc
Confidence 35677777777777776631 222223444444 556789999998764 35678888888888888876543
Q ss_pred c---ccHHHHHHHHHhcCCCCCCcccCC------------CCCCChhhHHHHHHHHHHcCCccccccccCC-CCCCCCHH
Q 020097 159 G---MDRERAKAYILNCQSYDGGFGLTP------------GSESHGGGTYCAVASLRLMGFIEDNVLSKNT-SSSIIDLP 222 (331)
Q Consensus 159 ~---~~~~~~~~~I~~~Q~~dGGFg~~p------------~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~-~~~~~~~~ 222 (331)
. ....++++|+++.|.+||.|-..- +.+.....|++++.+|...+........... ..-...+.
T Consensus 415 ~id~~~i~~a~~wL~~~Q~~~G~f~e~g~~~~~~~~gg~~~~~~~~~ltAyvliaL~e~~~~~~~~~~~~~~~~~~~~i~ 494 (767)
T 4fxk_B 415 GGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASIS 494 (767)
T ss_dssp SCCHHHHHHHHHHHHHTBCTTSCBCCSSCSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhhhhcccchhcchhcchhhcCCcCCCccchhHHHHHHHHHHhcCCccccchhhhhHhHHHHHHH
Confidence 3 345778899999999999996531 1123455677778787665433211000000 00001256
Q ss_pred HHHHHHHhcC
Q 020097 223 LLLSWCLQRQ 232 (331)
Q Consensus 223 ~~~~wL~~~Q 232 (331)
++.+||.++.
T Consensus 495 ka~~~L~~~~ 504 (767)
T 4fxk_B 495 KANSFLGEKA 504 (767)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 7888987754
No 40
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=97.24 E-value=0.0017 Score=67.35 Aligned_cols=216 Identities=16% Similarity=0.157 Sum_probs=128.3
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCCCcHHHHHHHHHHHHHhCCCCCcccHHHHHHHH
Q 020097 41 DAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSILTSM 120 (331)
Q Consensus 41 ~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~~~~~~~~~~~~~~~l~~Ty~Al~~L~~lg~~~~~~~~~~~~~~l 120 (331)
.+.++||+..|. +||+||+-..... .--+.+|.+||.+|..-+..-+ ..++.+.||
T Consensus 104 p~~~~wil~nQ~--------~DGsWg~~~~~~~--------------~d~ll~TlAcvlAL~~w~~~~~--~i~~Gl~fl 159 (817)
T 3sdr_A 104 PQTVDWILKNQL--------KDGSWGIQSHFLL--------------SDRLLATLSCVLVLLKWNVGDL--QVEQGIEFI 159 (817)
T ss_dssp HHHHHHHHHCCC--------TTSCCSCTTCCCH--------------HHHHHHHHHHHHHHHHTTCCHH--HHHHHHHHH
T ss_pred hHHHHHHHHccC--------CCCCCCCCCCcch--------------HHHHHHHHHHHHHHHHccCCHH--HHHHHHHHH
Confidence 688999999885 6888884321000 0159999999999988553222 246788999
Q ss_pred HhccCC-CCCC--cccccCCccChhHHHHHHHH-HHHhCC----------------------C--------C-cc-----
Q 020097 121 RNLQQH-DGSF--MPIHFGAEKDLRFVYCAAAI-CFLLED----------------------W--------S-GM----- 160 (331)
Q Consensus 121 ~~~q~~-dG~f--~~~~~~~~~d~~~ty~al~~-l~lL~~----------------------~--------~-~~----- 160 (331)
.+.... +.-. ...+. ....++=++.- +.-++. . + ..
T Consensus 160 ~~nl~~~~~~~~~~~~~v----gfeiifP~ll~~a~~~gl~~p~~~~~~~~l~~~r~~kL~~~~~~~~~~~p~~llhslE 235 (817)
T 3sdr_A 160 KSNLELVKDETDQDSLVT----DFEIIFPSLLREAQSLRLGLPYDLPYIHLLQTKRQERLAKLSREEIYAVPSPLLYSLE 235 (817)
T ss_dssp HHHHTTCCSGGGSCSCCT----THHHHHHHHHHHHHHTTCSCCTTCHHHHHHHHHHHHHHHTCCSGGGGTSCCGGGGGGG
T ss_pred HHHHHHhhcccccCCCCc----ceeeeHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHhCCChhhccCCCchHHHHHH
Confidence 876432 1100 01111 11122211110 111110 0 0 00
Q ss_pred cHHHHHHH--HHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCC-Ccc
Q 020097 161 DRERAKAY--ILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAA-DGG 237 (331)
Q Consensus 161 ~~~~~~~~--I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~-dGG 237 (331)
-....++| |++.|..||+|..+| .+|.+++.- .+ | +++.+||.+.+.. +||
T Consensus 236 ~l~~~~d~~~~~~~q~~~GS~~~SP------saTAa~l~~---~~----------------d-~~~~~YL~~~~~~~~g~ 289 (817)
T 3sdr_A 236 GIQDIVEWERIMEVQSQDGSFLSSP------ASTACVFMH---TG----------------D-AKCLEFLNSVMIKFGNF 289 (817)
T ss_dssp GCTTTCCTTTGGGGCCTTSCBTTBH------HHHHHHHHH---HC----------------C-HHHHHHHHHHHHHHSSC
T ss_pred hccccccHHHHHhccCCCCCcccCH------HHHHHHHHh---CC----------------C-hhHHHHHHHHHHhcCCC
Confidence 00112456 788999999999877 578776643 12 1 4789999876443 333
Q ss_pred ccCCCCC-CCCcchhhHHHHHHHHhCCCCCCC--HHHHHHHHHhccCCCCCcCC-CCCCCCCHHHHHHHHHHHHhcCCCC
Q 020097 238 FQGRANK-PSDTCYAFWIGSVLRMLGGYNLID--KEALRGFLLTCQSQYGGFGK-CPGDLPDLYHSFYGYTAFSLLEEPG 313 (331)
Q Consensus 238 f~gr~~k-~~D~~yt~~~~a~L~lL~~~~~~~--~~~~~~~L~~~Q~~~GGf~~-~p~~~~D~~hT~~al~aLsll~~~~ 313 (331)
.|.. +.|..-.-|.+-+|.-||-...+. ++.+.++|.++....| ++. .++..+|++.|..++-.|-..|+.-
T Consensus 290 ---VP~~yP~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~g-i~~~~~~~~~Dl~~tAl~FRlLR~~Gy~V 365 (817)
T 3sdr_A 290 ---VPCLYPVDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERG-IGWGRLNPIADLETTALGFRLLRLHRYNV 365 (817)
T ss_dssp ---CCSSSCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTTC-CCSSTTCSSCCHHHHHHHHHHHHHTTCCC
T ss_pred ---CCccCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcc-cccccCCCCCCHHHHHHHHHHHHHcCCCc
Confidence 4554 347777779999999999533222 4677888876655433 332 3444679999999999999999764
Q ss_pred C
Q 020097 314 L 314 (331)
Q Consensus 314 ~ 314 (331)
.
T Consensus 366 S 366 (817)
T 3sdr_A 366 S 366 (817)
T ss_dssp C
T ss_pred c
Confidence 3
No 41
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=97.18 E-value=0.00076 Score=64.03 Aligned_cols=131 Identities=9% Similarity=-0.115 Sum_probs=88.3
Q ss_pred cHHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCC-CCCCHHHHHHHHHhcCCCCcccc
Q 020097 161 DRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSS-SIIDLPLLLSWCLQRQAADGGFQ 239 (331)
Q Consensus 161 ~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~-~~~~~~~~~~wL~~~Q~~dGGf~ 239 (331)
...+.+.-++.-|+.||+ + -++-.+.-|+.||..+.+..+.......+. -...+++++++|++.|.+||+|.
T Consensus 131 v~~~~v~kLl~~~~~~g~----~---~sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~~ai~~~~~~l~~~q~~dG~fG 203 (399)
T 2pmv_A 131 ATLPIAVRFAKTLLANSS----P---FNVDTGAMATLALTCMYNKIPVGSEEGYRSLFGQVLKDIVEKISMKIKDNGIIG 203 (399)
T ss_dssp HHHHHHHHHHHHHHHCCS----C---CCHHHHHHHHHHHHHHHTBCCTTCCSSHHHHHHHHHHHHHHHHTTSBCTTSCBS
T ss_pred CCHHHHHHHHHHHHccCC----c---ccchHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHhhcCCCccc
Confidence 456677777777777742 1 146667778888887765110000000000 01236778899999999999995
Q ss_pred CCCCCCCCcchhhHHHHHHHHhCCC--CCCCHHHHHHHHHhccCCCCCcCCCCCCCCCHHHHHHHHHHHHhcCCCC
Q 020097 240 GRANKPSDTCYAFWIGSVLRMLGGY--NLIDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEPG 313 (331)
Q Consensus 240 gr~~k~~D~~yt~~~~a~L~lL~~~--~~~~~~~~~~~L~~~Q~~~GGf~~~p~~~~D~~hT~~al~aLsll~~~~ 313 (331)
|...|=-|+-+|...+.. ..++..++.++|++ |..+|+|+ ++..|+-.|-+|.--++..
T Consensus 204 -------n~yST~LA~QAL~~~~~~~~~~W~c~~al~~l~~-q~~~G~F~-------np~~taQilPaL~~ktyld 264 (399)
T 2pmv_A 204 -------DIYSTGLAMQALSVTPEPSKKEWNCKKTTDMILN-EIKQGKFH-------NPMSIAQILPSLKGKTYLD 264 (399)
T ss_dssp -------SHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHHH-HHTTTTTC-------SHHHHHHHHHHHTTCCGGG
T ss_pred -------ccccHHHHHHHHHhcCCCccccccHHHHHHHHHH-HhhCCCcC-------CHHHHHHHHHHhcCCCccC
Confidence 566676777888777752 33478999999998 99999997 7789999998887544443
No 42
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=97.17 E-value=0.0023 Score=65.87 Aligned_cols=215 Identities=15% Similarity=0.115 Sum_probs=128.1
Q ss_pred hHHHHHHHHHhccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCCCcHHHHHHHHHHHHHhCCCCCcccHHHHHHH
Q 020097 40 KDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSILTS 119 (331)
Q Consensus 40 ~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~~~~~~~~~~~~~~~l~~Ty~Al~~L~~lg~~~~~~~~~~~~~~ 119 (331)
-.+.++||+..|. +||+||+-.+... .--+.+|.+||.+|..-+..-+ ..++.+.|
T Consensus 55 Fp~~~~wil~nQ~--------~DGsWg~~~~~~~--------------~d~ll~TlAcvlAL~~w~~~~~--~i~~Gl~f 110 (764)
T 3p5p_A 55 FPQALNWVFNNQL--------QDGSWGIESHFSL--------------CDRLLNTTNSVIALSVWKTGHS--QVQQGAEF 110 (764)
T ss_dssp CHHHHHHHHHCCC--------TTSCCSCTTSCCH--------------HHHHHHHHHHHHHHHHTTCCHH--HHHHHHHH
T ss_pred ChHHHHHHHHccC--------CCCCCCCCCCcch--------------HHHHHHHHHHHHHHHHccCCHH--HHHHHHHH
Confidence 4678999999886 6888884321110 0159999999999988553222 24678899
Q ss_pred HHhccCC-CCCCcccccCCccChhHHHHHHHH-HHHhCC-----------------------------CC-c-----ccH
Q 020097 120 MRNLQQH-DGSFMPIHFGAEKDLRFVYCAAAI-CFLLED-----------------------------WS-G-----MDR 162 (331)
Q Consensus 120 l~~~q~~-dG~f~~~~~~~~~d~~~ty~al~~-l~lL~~-----------------------------~~-~-----~~~ 162 (331)
|.+...- |. -...+. ....++=++.- +.-++. .+ . +-.
T Consensus 111 l~~nl~~~~~-~~~~~v----gfeiifP~ll~~a~~~gl~~p~~~~~~~~l~~~r~~kL~~~~~~~~~~p~~llhslE~~ 185 (764)
T 3p5p_A 111 IAENLRLLNE-EDELSP----DFQIIFPALLQKAKALGINLPYDLPFIKYLSTTREARLTDVSAAADNIPANMLNALEGL 185 (764)
T ss_dssp HHHHHTTCCT-TSCCCT----THHHHHHHHHHHHHHTTCCCCTTSHHHHHHHHHHHHHHHHHHTSTTSSCGGGGGGGGGS
T ss_pred HHHHHHhhcC-CCCCCc----eeeeeHHHHHHHHHHcCCCCCCCchhHHHHHHhHHHHHhcCchhhcCCCchHHHHHHhc
Confidence 8865321 21 011111 11122211110 111110 00 0 000
Q ss_pred HHHHHH--HHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCC-Ccccc
Q 020097 163 ERAKAY--ILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAA-DGGFQ 239 (331)
Q Consensus 163 ~~~~~~--I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~-dGGf~ 239 (331)
...++| |++.|..||+|..+| .+|.+++.- .+ + +++.+||.+.+.. +||
T Consensus 186 ~~~~d~~~~~~~~~~~GS~~~SP------saTAa~l~~---~~--d---------------~~~~~YL~~~~~~~~g~-- 237 (764)
T 3p5p_A 186 EEVIDWNKIMRFQSKDGSFLSSP------ASTACVLMN---TG--D---------------EKCFTFLNNLLDKFGGC-- 237 (764)
T ss_dssp GGGCCTTGGGGGBCTTSCBTTBH------HHHHHHHHH---HC--C---------------HHHHHHHHHHHHHHTSC--
T ss_pred cccccHHHHHhccCCCCCcccCh------HHHHHHHHh---CC--C---------------hhHHHHHHHHHHhcCCC--
Confidence 112456 788898999999877 578877654 12 1 3689999876443 343
Q ss_pred CCCCC-CCCcchhhHHHHHHHHhCCCCCCC--HHHHHHHHHhccCCCCCcCC-CCCCCCCHHHHHHHHHHHHhcCCCC
Q 020097 240 GRANK-PSDTCYAFWIGSVLRMLGGYNLID--KEALRGFLLTCQSQYGGFGK-CPGDLPDLYHSFYGYTAFSLLEEPG 313 (331)
Q Consensus 240 gr~~k-~~D~~yt~~~~a~L~lL~~~~~~~--~~~~~~~L~~~Q~~~GGf~~-~p~~~~D~~hT~~al~aLsll~~~~ 313 (331)
.|.. +.|..-.-|.+-+|.-||-...+. ++.+.++|.++....| ++. .++..+|++.|..++-.|-..|+.-
T Consensus 238 -VP~~yP~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~g-i~~~~~~~~~Dl~~tAl~FRlLR~~Gy~V 313 (764)
T 3p5p_A 238 -VPCMYSIDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERG-IGWGRDSLVPDLNTTALGLRTLRMHGYNV 313 (764)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTTC-CCSSTTCSSCCHHHHHHHHHHHHHTTCCC
T ss_pred -CCCcCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcc-cccccCCCCCCHHHHHHHHHHHHhcCCCc
Confidence 4543 347777779999999999533221 4677888876655433 432 2444579999999999999999764
No 43
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=97.12 E-value=0.019 Score=58.64 Aligned_cols=119 Identities=18% Similarity=0.176 Sum_probs=79.5
Q ss_pred HHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCccccCCCCC-CCC
Q 020097 169 ILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANK-PSD 247 (331)
Q Consensus 169 I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k-~~D 247 (331)
|+..|..||+|..+| .+|.+|+.. -+ -+++.+||.+.....+ ++.|.. +.|
T Consensus 193 ~~~~q~~~GS~~~SP------saTAa~l~~---~~-----------------d~~~l~YL~~~v~k~~--g~VP~~yP~d 244 (727)
T 3pya_A 193 LLKLQSQDGSFLFSP------SSTAFAFMQ---TR-----------------DSNCLEYLRNAVKRFN--GGVPNVFPVD 244 (727)
T ss_dssp HGGGCCTTSSBTTBH------HHHHHHHHH---HC-----------------CHHHHHHHHHHHHHTT--TCCCSSCCCH
T ss_pred HhcccCCCCCcccCH------HHHHHHHhc---CC-----------------CHHHHHHHHHHHHHcC--CCCCCCCCCc
Confidence 556788899999876 577776543 11 1468999988654322 245554 357
Q ss_pred cchhhHHHHHHHHhCCCCCCC--HHHHHHHHHhccCCCCCcCCCC-CCCCCHHHHHHHHHHHHhcCCCCCCC
Q 020097 248 TCYAFWIGSVLRMLGGYNLID--KEALRGFLLTCQSQYGGFGKCP-GDLPDLYHSFYGYTAFSLLEEPGLNP 316 (331)
Q Consensus 248 ~~yt~~~~a~L~lL~~~~~~~--~~~~~~~L~~~Q~~~GGf~~~p-~~~~D~~hT~~al~aLsll~~~~~~~ 316 (331)
..---|.+-+|.-||-...+. ++.+.++|.++....| .+..+ ...+|++.|..++-.|-..|+.-...
T Consensus 245 ~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~~~~~g-~~~~~~~~~~DL~~tAL~FRLLRqhGy~VS~D 315 (727)
T 3pya_A 245 LFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNG-ICWARCSHVQDIDDTAMAFRLLRQHGYQVSAD 315 (727)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTCCTTC-CCSSSSCSCCCHHHHHHHHHHHHHTTCCCCGG
T ss_pred HHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcC-cccccCCCCCCHHHHHHHHHHHHhCCCCCCHH
Confidence 777779999999998533222 4677888877655333 32222 23579999999999999999864333
No 44
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=96.82 E-value=0.027 Score=58.13 Aligned_cols=116 Identities=19% Similarity=0.226 Sum_probs=78.7
Q ss_pred HHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCccccCCCCC-CCC
Q 020097 169 ILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANK-PSD 247 (331)
Q Consensus 169 I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k-~~D 247 (331)
|++.|..||+|..+| .+|.+++.- .+ + +++.+||.+.+..-|| +.|.. +.|
T Consensus 218 v~~~q~~~GS~~~SP------saTAa~l~~---~~--d---------------~~~~~YL~~~~~~~~g--~VP~~yP~d 269 (785)
T 3s9v_A 218 IMKLQSKDGSFLSSP------ASTAAVFMR---TG--N---------------KKCLDFLNFVLKKFGN--HVPCHYPLD 269 (785)
T ss_dssp HHTTCCTTSCBTTBH------HHHHHHHHH---HC--C---------------HHHHHHHHHHHHHHSS--CCCSSCCCH
T ss_pred HHhccCCCCCcccCH------HHHHHHHHh---CC--C---------------hhHHHHHHHHHHhcCC--CCCCcCCCc
Confidence 568899999999877 578777543 11 1 4688998886543222 34554 347
Q ss_pred cchhhHHHHHHHHhCCCCCC--CHHHHHHHHHhccCCCCCcCCCC-CCCCCHHHHHHHHHHHHhcCCCC
Q 020097 248 TCYAFWIGSVLRMLGGYNLI--DKEALRGFLLTCQSQYGGFGKCP-GDLPDLYHSFYGYTAFSLLEEPG 313 (331)
Q Consensus 248 ~~yt~~~~a~L~lL~~~~~~--~~~~~~~~L~~~Q~~~GGf~~~p-~~~~D~~hT~~al~aLsll~~~~ 313 (331)
..-.-|.+-+|.-||-...+ .++.+.++|.++.... |++..+ +..+|++.|..++-.|-..|+.-
T Consensus 270 ~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~-gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~V 337 (785)
T 3s9v_A 270 LFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDER-GIGWARENPVPDIDDTAMGLRILRLHGYNV 337 (785)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTT-CCCSSTTCSSCCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhc-cccccccCCCCCHHHHHHHHHHHHhcCCCC
Confidence 77777999999999953322 1457788887665543 343333 23479999999999999999764
No 45
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=96.50 E-value=0.015 Score=65.11 Aligned_cols=127 Identities=16% Similarity=0.103 Sum_probs=81.3
Q ss_pred HHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHh-cCCCCccccCCC---CC
Q 020097 169 ILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQ-RQAADGGFQGRA---NK 244 (331)
Q Consensus 169 I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~-~Q~~dGGf~gr~---~k 244 (331)
+++.|++||||+..++.+++...|..++-.|..+...- .+ ....+.++++||.+ +|.++|.|.... ++
T Consensus 1056 ~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~-~v-------~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~ 1127 (1676)
T 3cu7_A 1056 IMSYRNADYSYSVWKGGSASTWLTAFALRVLGQVNKYV-EQ-------NQNSICNSLLWLVENYQLDNGSFKENSQYQPI 1127 (1676)
T ss_dssp GGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHHTTS-CC-------CHHHHHHHHHHHHHHSBCTTSCBCCCSSCCCC
T ss_pred HhhccCCCCCccccCCCCCcEEEeHHHHHHHHHHHhcc-cC-------CHHHHHHHHHHHHHhhCCCCCcccCCccccch
Confidence 55799999999999888889999999999998875431 00 01236789999999 999999996321 11
Q ss_pred C-----------CCcchhhHHHHHHHHhCCC-CC--C--CHHHHHHHHHhccCCCCCcCCCCCCCCCHHHHHHHHHHHHh
Q 020097 245 P-----------SDTCYAFWIGSVLRMLGGY-NL--I--DKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSL 308 (331)
Q Consensus 245 ~-----------~D~~yt~~~~a~L~lL~~~-~~--~--~~~~~~~~L~~~Q~~~GGf~~~p~~~~D~~hT~~al~aLsl 308 (331)
. .|...+.+++.+|.-.+.. .. . ...++.+||...... ..+++.....-.||++
T Consensus 1128 ~~~gg~~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~i~~a~~yL~~~~~~----------~~~~y~~A~lA~Al~l 1197 (1676)
T 3cu7_A 1128 KLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVKIDTALIKADNFLLENTLP----------AQSTFTLAISAYALSL 1197 (1676)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHHTGGGSCCHHHHHHHHHHHHHHHHHHSS----------CSCHHHHHHHHHHHTT
T ss_pred hhcCCcccccccCccccHHHHHHHHHhcccccCCcccHHHHHHHHHHHHHhhhc----------cCCHHHHHHHHHHHHh
Confidence 0 1333444555555444321 11 1 245788998654321 2456666666666777
Q ss_pred cCCCC
Q 020097 309 LEEPG 313 (331)
Q Consensus 309 l~~~~ 313 (331)
++...
T Consensus 1198 ~g~~~ 1202 (1676)
T 3cu7_A 1198 GDKTH 1202 (1676)
T ss_dssp SCTTC
T ss_pred cCCch
Confidence 76653
No 46
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=95.49 E-value=0.0023 Score=71.22 Aligned_cols=69 Identities=17% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHh-cCCCCccccC
Q 020097 165 AKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQ-RQAADGGFQG 240 (331)
Q Consensus 165 ~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~-~Q~~dGGf~g 240 (331)
.+.-+++.|++||||+...+.+++...|..++-.|....+.-..+ ....+.++++||.+ +|.+||.|..
T Consensus 1035 Gyqr~l~yq~~DGsfs~w~~~~~stWLTAyV~k~f~~A~~~i~~V-------d~~~l~~~~~wL~~~~Q~~dG~F~e 1104 (1642)
T 3prx_B 1035 GYAQQMVYKKADHSYAAFTNRASSSWLTAYVVKVFAMAAKMVAGI-------SHEIICGGVRWLILNRQQPDGAFKE 1104 (1642)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred HHHHHHHhcCCCCCeecCCCCCCccccHHHHHHHHHHHHhhccCC-------CHHHHHHHHHHHHhhccCCCCcccc
Confidence 334456789999999998777778888999998888765431001 02347789999997 8999999963
No 47
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=90.82 E-value=0.21 Score=51.59 Aligned_cols=59 Identities=17% Similarity=0.058 Sum_probs=40.8
Q ss_pred ccHHHHHHHHHhcCCCCCCcccCCCCCC-C-hhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHh
Q 020097 160 MDRERAKAYILNCQSYDGGFGLTPGSES-H-GGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQ 230 (331)
Q Consensus 160 ~~~~~~~~~I~~~Q~~dGGFg~~p~~es-h-~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~ 230 (331)
..-..+++||++.|.+||+||....... + +-+|..||.||..-+..+ ..+++.+.||.+
T Consensus 74 p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~l~~TlAcvlAL~~w~~~~------------~~i~~Gl~fl~~ 134 (785)
T 3s9v_A 74 PHFPETVEWILQNQLKDGSWGEGFYFLAYDRILATLACIITLTLWRTGE------------TQVQKGIEFFRT 134 (785)
T ss_dssp BSSHHHHHHHHHCCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCCH------------HHHHHHHHHHHH
T ss_pred CCchHHHHHHHHccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHcccCH------------HHHHHHHHHHHH
Confidence 3448899999999999999997432111 2 667889998888754332 125566666654
No 48
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=90.77 E-value=0.25 Score=51.29 Aligned_cols=45 Identities=20% Similarity=0.123 Sum_probs=33.1
Q ss_pred ccHHHHHHHHHhcCCCCCCcccCCCCCC--ChhhHHHHHHHHHHcCC
Q 020097 160 MDRERAKAYILNCQSYDGGFGLTPGSES--HGGGTYCAVASLRLMGF 204 (331)
Q Consensus 160 ~~~~~~~~~I~~~Q~~dGGFg~~p~~es--h~~~Ty~AlaaL~llg~ 204 (331)
..-..+++||++.|.+||+||....... -+-.|..||.||..-+.
T Consensus 101 p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~ 147 (817)
T 3sdr_A 101 PQFPQTVDWILKNQLKDGSWGIQSHFLLSDRLLATLSCVLVLLKWNV 147 (817)
T ss_dssp BSSHHHHHHHHHCCCTTSCCSCTTCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCchHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccC
Confidence 4458999999999999999996432111 25578888888877543
No 49
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=88.31 E-value=0.42 Score=49.16 Aligned_cols=58 Identities=16% Similarity=0.095 Sum_probs=40.4
Q ss_pred cHHHHHHHHHhcCCCCCCcccCCCCCC--ChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHh
Q 020097 161 DRERAKAYILNCQSYDGGFGLTPGSES--HGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQ 230 (331)
Q Consensus 161 ~~~~~~~~I~~~Q~~dGGFg~~p~~es--h~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~ 230 (331)
.-..+++||++.|.+||+||....... -+-+|..||.||..-+..+ ..+++.+.||.+
T Consensus 54 ~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~~~------------~~i~~Gl~fl~~ 113 (764)
T 3p5p_A 54 RFPQALNWVFNNQLQDGSWGIESHFSLCDRLLNTTNSVIALSVWKTGH------------SQVQQGAEFIAE 113 (764)
T ss_dssp SCHHHHHHHHHCCCTTSCCSCTTSCCHHHHHHHHHHHHHHHHHTTCCH------------HHHHHHHHHHHH
T ss_pred CChHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccCCH------------HHHHHHHHHHHH
Confidence 468899999999999999996432111 2557888888887754332 135667777764
No 50
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=87.89 E-value=0.47 Score=48.45 Aligned_cols=57 Identities=18% Similarity=0.077 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcCCCCCCcccCCCCCC--ChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHh
Q 020097 162 RERAKAYILNCQSYDGGFGLTPGSES--HGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQ 230 (331)
Q Consensus 162 ~~~~~~~I~~~Q~~dGGFg~~p~~es--h~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~ 230 (331)
-..+++||++.|.+||+||....... -+-+|..||.||.--+..+ ..+++++.||.+
T Consensus 52 Fp~~~~wil~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~------------~~i~rGl~fl~~ 110 (727)
T 3pya_A 52 FPSAVKWIAENQLSDGSWGDAYLFSYHDRLINTLACVVALRSWNLFP------------HQCNKGITFFRE 110 (727)
T ss_dssp CHHHHHHHHHTCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCCH------------HHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHccCCH------------HHHHHHHHHHHH
Confidence 58899999999999999996321111 2567888888887744322 125566666654
No 51
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=35.76 E-value=49 Score=22.44 Aligned_cols=28 Identities=11% Similarity=0.108 Sum_probs=20.5
Q ss_pred HHHHHHHHhCCCCcccHHHHHHHHHhcCCCCC
Q 020097 146 CAAAICFLLEDWSGMDRERAKAYILNCQSYDG 177 (331)
Q Consensus 146 ~al~~l~lL~~~~~~~~~~~~~~I~~~Q~~dG 177 (331)
.|..+|..-+ -+++++++||.+...|.-
T Consensus 35 qA~kALKat~----~NvErAaDWLFSH~D~~~ 62 (63)
T 1wgn_A 35 CVLRAMKKKG----ENIEQILDYLFAHSGPSS 62 (63)
T ss_dssp HHHHHHHHHC----SCHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHcC----CCHHHHHHHHHhCCCCCC
Confidence 3555666555 389999999999877653
No 52
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=34.25 E-value=1.3e+02 Score=27.77 Aligned_cols=92 Identities=15% Similarity=0.024 Sum_probs=53.8
Q ss_pred CcHHHHHHHHHHHHHhCCCCCcccH-------HHHHHHHHhccCCCCCCcccccCCc--cChhHHHHHHHHHHH---hC-
Q 020097 89 SNLASTYCALAILKAVGYNFANIDS-------KSILTSMRNLQQHDGSFMPIHFGAE--KDLRFVYCAAAICFL---LE- 155 (331)
Q Consensus 89 ~~l~~Ty~Al~~L~~lg~~~~~~~~-------~~~~~~l~~~q~~dG~f~~~~~~~~--~d~~~ty~al~~l~l---L~- 155 (331)
.+-|.+|.-+.+|..+..+-+...+ +++++++.+.|.+||-|.......+ .|...| |+.+..+ .+
T Consensus 234 G~gW~~~gl~~~l~~l~~p~~~~~~~~~~~~~~~~a~~~~~~q~~~G~W~~~~d~~~~y~EsSat--A~~ay~ll~~~~~ 311 (382)
T 3pmm_A 234 GNSWLTMVIPDFLELVDLPEGNAVRRYLITVLDAQIAALAECQDDSGLWHTLLDDPHSYLEASAT--AGFAYGILKAVRK 311 (382)
T ss_dssp HHHHHHHHHHHHHHHHCCCTTCHHHHHHHHHHHHHHHHHHHHCCTTSCEESBTTCTTSCEEHHHH--HHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHcCCCCCChhhccCCCCCCccccHH--HHHHHHHHHHHHc
Confidence 5678888888888775422111112 4678888999999998853321111 233333 3333222 22
Q ss_pred -CCCc---ccHHHHHHHHHhcCCCCCCcccC
Q 020097 156 -DWSG---MDRERAKAYILNCQSYDGGFGLT 182 (331)
Q Consensus 156 -~~~~---~~~~~~~~~I~~~Q~~dGGFg~~ 182 (331)
..+. ...+++.+-|.++.++||-.+..
T Consensus 312 g~l~~~Y~~~a~ka~~~l~~~i~~dG~l~~v 342 (382)
T 3pmm_A 312 RYVGQHYAGVAEKAIRGIVQNISPQGELLQT 342 (382)
T ss_dssp TSSCGGGHHHHHHHHHHHHHTBCTTSCBCSC
T ss_pred CCCcHHHHHHHHHHHHHHHhhCCCCCCEeCe
Confidence 2221 13478889999999999876554
No 53
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=32.94 E-value=1.6e+02 Score=27.88 Aligned_cols=92 Identities=11% Similarity=0.027 Sum_probs=52.3
Q ss_pred CcHHHHHHHHHHHHHhCCCCCc----c-cHHHHHHHHHhccCCCCCCcccccCCccChhHHHHHHHHHHHh-----CCCC
Q 020097 89 SNLASTYCALAILKAVGYNFAN----I-DSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLL-----EDWS 158 (331)
Q Consensus 89 ~~l~~Ty~Al~~L~~lg~~~~~----~-~~~~~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL-----~~~~ 158 (331)
.+-|.++.-+.+|..+..+... + .-+++++.+.+.|.++|-|.......+.-...+-.|+.+..++ +..+
T Consensus 267 GnGW~~~gl~~~l~~lp~~~~~r~~l~~~~~~~a~~l~~~Q~~~G~W~~vld~~~~y~EsSaTAmfaygllkgvr~G~Ld 346 (445)
T 3k11_A 267 ANGWALLTACELLDVLPEDYPQRPKVMDYFRAHVRGVTALQSGEGFWHQLLDCNDSYLETSATAIYVYCLAHAINKGWID 346 (445)
T ss_dssp HHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHTTCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHHTSSC
T ss_pred cchHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHhCCCCCchhhccCCCCCCCCccHHHHHHHHHHHHHHcCCCC
Confidence 4677788878888777653211 0 0146778889999999988543211122222222233322222 2222
Q ss_pred c----ccHHHHHHHHHhcCCCCCCcc
Q 020097 159 G----MDRERAKAYILNCQSYDGGFG 180 (331)
Q Consensus 159 ~----~~~~~~~~~I~~~Q~~dGGFg 180 (331)
. ...+++.+.|.++.++||-.+
T Consensus 347 ~~~Y~~~A~ka~~~L~~~i~~dG~l~ 372 (445)
T 3k11_A 347 AIAYGPVAQLGWHAVAGKINEEGQVE 372 (445)
T ss_dssp HHHHHHHHHHHHHHHHTTBCTTSCBC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCEe
Confidence 1 124678889999889998554
No 54
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=30.68 E-value=1e+02 Score=28.42 Aligned_cols=72 Identities=11% Similarity=0.033 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCCCCCCcccCCCCC-CChhhHHHHHHHHHH-----cCCccccccccCCCCCCCCHHHHHHHHHhcCCCC
Q 020097 162 RERAKAYILNCQSYDGGFGLTPGSE-SHGGGTYCAVASLRL-----MGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAAD 235 (331)
Q Consensus 162 ~~~~~~~I~~~Q~~dGGFg~~p~~e-sh~~~Ty~AlaaL~l-----lg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~d 235 (331)
.++++++++++|.+||-|-...... +-.-++..|+.+-.+ +|.++.+. ....+++.+-|.++..+|
T Consensus 265 ~~~~a~~~~~~q~~~G~W~~~~d~~~~y~EsSatA~~ay~ll~~~~~g~l~~~Y--------~~~a~ka~~~l~~~i~~d 336 (382)
T 3pmm_A 265 LDAQIAALAECQDDSGLWHTLLDDPHSYLEASATAGFAYGILKAVRKRYVGQHY--------AGVAEKAIRGIVQNISPQ 336 (382)
T ss_dssp HHHHHHHHHHHCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHTTSSCGGG--------HHHHHHHHHHHHHTBCTT
T ss_pred HHHHHHHHHHcCCCCCChhhccCCCCCCccccHHHHHHHHHHHHHHcCCCcHHH--------HHHHHHHHHHHHhhCCCC
Confidence 3578899999999999888765332 212222233333322 34443222 234678999999988888
Q ss_pred ccccCC
Q 020097 236 GGFQGR 241 (331)
Q Consensus 236 GGf~gr 241 (331)
|-..+.
T Consensus 337 G~l~~v 342 (382)
T 3pmm_A 337 GELLQT 342 (382)
T ss_dssp SCBCSC
T ss_pred CCEeCe
Confidence 866544
Done!