Query 020098
Match_columns 331
No_of_seqs 133 out of 1321
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 07:00:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020098.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020098hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 1.3E-60 2.9E-65 446.7 28.2 272 36-330 1-291 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 4.6E-59 9.9E-64 429.7 26.2 282 31-330 7-307 (336)
3 PRK09912 L-glyceraldehyde 3-ph 100.0 3.6E-56 7.7E-61 423.2 29.4 280 33-330 10-314 (346)
4 TIGR01293 Kv_beta voltage-depe 100.0 1.3E-55 2.9E-60 414.8 28.6 275 38-330 1-298 (317)
5 COG0656 ARA1 Aldo/keto reducta 100.0 4.5E-56 9.8E-61 402.7 22.5 237 35-330 2-246 (280)
6 PRK10625 tas putative aldo-ket 100.0 4.1E-55 8.9E-60 416.2 29.1 275 36-330 1-321 (346)
7 PLN02587 L-galactose dehydroge 100.0 6.4E-54 1.4E-58 402.9 27.2 265 38-330 1-278 (314)
8 cd06660 Aldo_ket_red Aldo-keto 100.0 2.2E-50 4.7E-55 373.5 27.3 257 38-330 1-269 (285)
9 KOG1577 Aldo/keto reductase fa 100.0 5.5E-51 1.2E-55 369.7 20.7 238 38-330 6-267 (300)
10 PRK10376 putative oxidoreducta 100.0 2.8E-49 6E-54 367.5 25.6 248 34-330 3-270 (290)
11 PF00248 Aldo_ket_red: Aldo/ke 100.0 1.7E-49 3.7E-54 367.1 23.9 254 50-331 1-266 (283)
12 PRK11172 dkgB 2,5-diketo-D-glu 100.0 3.1E-49 6.7E-54 363.0 24.9 225 46-330 1-234 (267)
13 PRK14863 bifunctional regulato 100.0 1.9E-49 4.1E-54 368.5 22.9 253 45-330 2-264 (292)
14 COG4989 Predicted oxidoreducta 100.0 6.3E-49 1.4E-53 342.5 17.8 255 36-329 1-274 (298)
15 PRK11565 dkgA 2,5-diketo-D-glu 100.0 1.5E-47 3.2E-52 353.2 24.4 233 38-331 6-245 (275)
16 KOG1576 Predicted oxidoreducta 100.0 3.4E-44 7.4E-49 315.1 19.8 263 35-330 21-303 (342)
17 COG1453 Predicted oxidoreducta 100.0 4.5E-42 9.8E-47 314.9 20.4 248 36-330 1-264 (391)
18 KOG3023 Glutamate-cysteine lig 98.3 1.8E-06 3.9E-11 76.0 6.6 74 176-254 155-228 (285)
19 PRK08392 hypothetical protein; 89.4 14 0.00031 32.5 15.3 187 75-307 14-209 (215)
20 PRK13796 GTPase YqeH; Provisio 89.4 8 0.00017 37.2 12.9 140 49-205 34-176 (365)
21 cd03319 L-Ala-DL-Glu_epimerase 89.0 7.1 0.00015 36.5 12.0 157 73-258 134-291 (316)
22 KOG0259 Tyrosine aminotransfer 88.9 23 0.0005 34.2 15.9 167 75-268 81-282 (447)
23 COG1748 LYS9 Saccharopine dehy 85.7 4.7 0.0001 39.1 8.7 80 75-173 79-158 (389)
24 PRK00164 moaA molybdenum cofac 84.9 35 0.00075 32.1 15.0 161 70-251 47-228 (331)
25 cd03315 MLE_like Muconate lact 83.8 32 0.0007 31.1 13.2 158 74-259 86-244 (265)
26 cd03316 MR_like Mandelate race 83.6 27 0.00057 33.2 13.0 157 74-254 140-299 (357)
27 cd03174 DRE_TIM_metallolyase D 83.4 9.8 0.00021 34.3 9.5 109 141-256 15-138 (265)
28 PRK07945 hypothetical protein; 83.0 44 0.00095 31.8 15.1 197 75-311 111-323 (335)
29 PRK13361 molybdenum cofactor b 82.9 43 0.00093 31.6 15.2 131 70-220 43-187 (329)
30 COG4464 CapC Capsular polysacc 82.7 20 0.00044 31.8 10.5 34 69-102 14-47 (254)
31 cd00739 DHPS DHPS subgroup of 82.2 37 0.00081 30.9 12.8 144 142-309 21-171 (257)
32 PRK08609 hypothetical protein; 82.1 37 0.0008 34.8 13.9 191 77-311 351-557 (570)
33 PF07021 MetW: Methionine bios 81.2 9.1 0.0002 33.4 7.8 153 79-259 5-172 (193)
34 cd00423 Pterin_binding Pterin 81.0 43 0.00093 30.4 12.8 145 142-310 21-172 (258)
35 cd04728 ThiG Thiazole synthase 80.9 43 0.00094 30.3 14.3 106 140-252 71-181 (248)
36 PRK05588 histidinol-phosphatas 80.3 44 0.00096 30.1 15.3 169 75-257 16-220 (255)
37 PRK00208 thiG thiazole synthas 80.1 46 0.001 30.2 14.4 106 140-252 71-181 (250)
38 PRK13210 putative L-xylulose 5 79.9 12 0.00026 34.0 8.9 50 237-302 98-147 (284)
39 TIGR00542 hxl6Piso_put hexulos 79.7 11 0.00023 34.5 8.5 50 237-302 98-147 (279)
40 PRK09856 fructoselysine 3-epim 79.4 33 0.00071 31.0 11.6 50 237-302 94-143 (275)
41 PF00682 HMGL-like: HMGL-like 79.0 41 0.00089 29.8 11.9 167 72-257 11-194 (237)
42 TIGR03597 GTPase_YqeH ribosome 78.4 50 0.0011 31.6 12.9 140 49-205 28-170 (360)
43 cd01965 Nitrogenase_MoFe_beta_ 77.0 31 0.00067 33.8 11.3 105 110-221 66-187 (428)
44 KOG0023 Alcohol dehydrogenase, 76.1 5.6 0.00012 37.5 5.3 154 31-249 169-324 (360)
45 TIGR01496 DHPS dihydropteroate 76.0 63 0.0014 29.4 13.4 98 142-253 20-125 (257)
46 cd00740 MeTr MeTr subgroup of 75.5 64 0.0014 29.3 12.8 108 142-258 23-131 (252)
47 TIGR03822 AblA_like_2 lysine-2 75.5 73 0.0016 30.0 15.8 137 72-221 119-263 (321)
48 PRK07535 methyltetrahydrofolat 75.4 59 0.0013 29.7 11.9 139 143-311 23-161 (261)
49 PRK14461 ribosomal RNA large s 74.3 35 0.00075 32.9 10.3 94 166-259 232-354 (371)
50 PRK09058 coproporphyrinogen II 72.9 1E+02 0.0022 30.5 14.2 111 140-262 225-335 (449)
51 PF05690 ThiG: Thiazole biosyn 72.5 18 0.00039 32.6 7.4 120 126-255 60-184 (247)
52 COG2102 Predicted ATPases of P 72.2 36 0.00077 30.3 9.1 102 176-305 75-177 (223)
53 TIGR02666 moaA molybdenum cofa 71.5 90 0.002 29.3 14.5 133 70-221 41-187 (334)
54 PF01261 AP_endonuc_2: Xylose 70.6 11 0.00023 32.3 5.6 85 204-302 28-126 (213)
55 TIGR00676 fadh2 5,10-methylene 70.6 87 0.0019 28.7 16.6 161 74-260 14-193 (272)
56 PF03102 NeuB: NeuB family; I 69.5 34 0.00074 30.9 8.7 114 71-205 52-185 (241)
57 PRK09613 thiH thiamine biosynt 68.3 55 0.0012 32.7 10.6 150 142-317 115-282 (469)
58 PRK13209 L-xylulose 5-phosphat 68.2 54 0.0012 29.8 10.1 50 237-302 103-152 (283)
59 PRK06740 histidinol-phosphatas 67.8 68 0.0015 30.4 10.8 105 149-256 156-293 (331)
60 PRK14463 ribosomal RNA large s 67.4 62 0.0013 31.0 10.5 91 166-258 211-326 (349)
61 cd06543 GH18_PF-ChiA-like PF-C 67.1 1.1E+02 0.0024 28.5 13.1 186 50-258 71-265 (294)
62 TIGR00735 hisF imidazoleglycer 66.8 87 0.0019 28.3 11.0 89 153-249 162-253 (254)
63 cd00408 DHDPS-like Dihydrodipi 66.7 1E+02 0.0022 28.1 13.9 62 70-136 13-74 (281)
64 PRK04452 acetyl-CoA decarbonyl 66.7 34 0.00075 32.3 8.4 95 154-256 84-185 (319)
65 PRK15408 autoinducer 2-binding 65.4 85 0.0019 29.6 11.1 89 126-222 23-111 (336)
66 TIGR02370 pyl_corrinoid methyl 65.3 27 0.00059 30.4 7.1 150 72-247 9-164 (197)
67 PRK07328 histidinol-phosphatas 65.3 1.1E+02 0.0024 27.8 15.2 172 76-256 19-230 (269)
68 PRK14459 ribosomal RNA large s 65.3 1E+02 0.0022 29.8 11.5 100 159-258 235-360 (373)
69 cd03174 DRE_TIM_metallolyase D 65.1 1E+02 0.0022 27.5 15.4 131 72-218 16-161 (265)
70 COG1751 Uncharacterized conser 65.0 41 0.0009 28.2 7.5 92 166-258 2-95 (186)
71 cd01974 Nitrogenase_MoFe_beta 63.8 1.1E+02 0.0023 30.2 11.7 104 110-220 70-191 (435)
72 PRK13958 N-(5'-phosphoribosyl) 62.8 26 0.00055 30.9 6.5 66 154-226 16-83 (207)
73 TIGR00381 cdhD CO dehydrogenas 62.7 1E+02 0.0022 29.9 10.8 95 156-260 150-254 (389)
74 COG2022 ThiG Uncharacterized e 62.6 59 0.0013 29.3 8.5 53 140-192 78-132 (262)
75 PRK02910 light-independent pro 62.6 1.8E+02 0.0039 29.4 13.4 105 110-222 70-194 (519)
76 COG2987 HutU Urocanate hydrata 62.1 39 0.00086 33.3 7.9 106 110-227 151-268 (561)
77 COG0820 Predicted Fe-S-cluster 62.0 79 0.0017 30.2 9.9 92 165-259 215-332 (349)
78 TIGR02026 BchE magnesium-proto 61.5 64 0.0014 32.4 9.8 77 175-254 223-305 (497)
79 TIGR03699 mena_SCO4550 menaqui 61.1 1.5E+02 0.0032 28.0 12.8 129 71-216 71-223 (340)
80 PF00682 HMGL-like: HMGL-like 60.7 66 0.0014 28.5 9.0 102 142-249 11-124 (237)
81 PRK01045 ispH 4-hydroxy-3-meth 60.7 1.5E+02 0.0032 27.8 12.5 105 190-327 156-274 (298)
82 PRK14467 ribosomal RNA large s 60.6 97 0.0021 29.7 10.4 99 161-259 207-331 (348)
83 COG1149 MinD superfamily P-loo 60.5 19 0.00041 33.2 5.2 94 154-258 155-251 (284)
84 cd03321 mandelate_racemase Man 59.7 99 0.0021 29.4 10.5 152 75-253 143-295 (355)
85 PRK05985 cytosine deaminase; P 59.6 1.7E+02 0.0036 28.1 12.5 170 75-258 98-277 (391)
86 cd02932 OYE_YqiM_FMN Old yello 59.6 1.6E+02 0.0034 27.8 11.8 80 127-210 220-310 (336)
87 TIGR03679 arCOG00187 arCOG0018 59.6 1.3E+02 0.0027 26.6 12.0 130 149-304 46-176 (218)
88 TIGR01862 N2-ase-Ialpha nitrog 59.2 1.7E+02 0.0036 29.0 12.2 105 110-221 102-222 (443)
89 PRK14457 ribosomal RNA large s 59.2 1.7E+02 0.0036 28.0 16.1 139 111-258 165-331 (345)
90 PRK14466 ribosomal RNA large s 59.0 94 0.002 29.7 9.9 92 165-258 210-326 (345)
91 PRK05283 deoxyribose-phosphate 58.9 77 0.0017 29.0 9.0 80 76-164 148-227 (257)
92 cd07944 DRE_TIM_HOA_like 4-hyd 58.5 62 0.0013 29.6 8.5 107 140-255 15-131 (266)
93 COG0279 GmhA Phosphoheptose is 58.4 1E+02 0.0022 26.4 8.8 122 75-209 28-154 (176)
94 PLN02428 lipoic acid synthase 58.3 1.8E+02 0.0038 27.9 12.8 165 72-257 130-325 (349)
95 COG2200 Rtn c-di-GMP phosphodi 57.9 1.5E+02 0.0032 26.9 11.2 136 110-256 69-216 (256)
96 PRK14462 ribosomal RNA large s 57.6 1.3E+02 0.0028 28.9 10.7 90 167-258 225-339 (356)
97 cd01966 Nitrogenase_NifN_1 Nit 57.4 73 0.0016 31.2 9.3 109 110-221 66-189 (417)
98 TIGR01228 hutU urocanate hydra 57.2 31 0.00068 34.4 6.4 106 110-227 142-259 (545)
99 CHL00076 chlB photochlorophyll 57.1 2.2E+02 0.0048 28.7 13.4 104 110-220 70-197 (513)
100 PRK05414 urocanate hydratase; 57.0 33 0.00072 34.3 6.6 106 110-227 151-268 (556)
101 PRK14017 galactonate dehydrata 57.0 1.9E+02 0.0041 27.8 12.1 84 163-254 203-287 (382)
102 COG2185 Sbm Methylmalonyl-CoA 56.8 1.1E+02 0.0025 25.3 12.7 108 75-209 26-134 (143)
103 TIGR00262 trpA tryptophan synt 56.8 1.6E+02 0.0034 26.8 18.4 34 72-105 21-54 (256)
104 PLN02363 phosphoribosylanthran 56.8 40 0.00086 30.8 6.8 65 156-226 64-130 (256)
105 KOG1549 Cysteine desulfurase N 56.5 57 0.0012 32.0 8.0 132 108-258 89-223 (428)
106 COG2089 SpsE Sialic acid synth 56.4 1.7E+02 0.0036 27.8 10.7 125 71-211 86-225 (347)
107 cd03327 MR_like_2 Mandelate ra 56.3 1.8E+02 0.0039 27.5 12.1 83 163-253 197-280 (341)
108 cd07943 DRE_TIM_HOA 4-hydroxy- 56.3 1.6E+02 0.0034 26.7 16.8 128 72-216 19-154 (263)
109 PF03279 Lip_A_acyltrans: Bact 56.1 1.1E+02 0.0025 27.9 10.0 66 78-163 110-175 (295)
110 TIGR01928 menC_lowGC/arch o-su 55.9 1.8E+02 0.0039 27.3 13.4 154 74-259 133-287 (324)
111 PRK00912 ribonuclease P protei 55.8 1.5E+02 0.0032 26.4 11.6 179 75-311 16-206 (237)
112 PF00701 DHDPS: Dihydrodipicol 55.7 1.7E+02 0.0036 26.9 11.7 109 69-190 16-126 (289)
113 COG2069 CdhD CO dehydrogenase/ 55.6 1.1E+02 0.0024 28.6 9.3 96 153-258 158-263 (403)
114 cd03323 D-glucarate_dehydratas 54.9 2E+02 0.0044 27.9 11.8 83 164-256 239-322 (395)
115 PF11020 DUF2610: Domain of un 54.3 14 0.00029 27.3 2.6 28 283-310 47-74 (82)
116 TIGR01278 DPOR_BchB light-inde 53.7 1.6E+02 0.0035 29.6 11.3 106 110-222 70-194 (511)
117 TIGR02668 moaA_archaeal probab 53.7 1.8E+02 0.0039 26.7 14.3 128 71-218 39-179 (302)
118 cd03322 rpsA The starvation se 53.5 41 0.00089 32.2 6.7 85 163-255 189-274 (361)
119 PRK01222 N-(5'-phosphoribosyl) 53.2 41 0.00089 29.6 6.1 66 155-227 19-86 (210)
120 cd02070 corrinoid_protein_B12- 53.2 1E+02 0.0022 26.7 8.7 23 72-94 8-30 (201)
121 cd04742 NPD_FabD 2-Nitropropan 53.1 51 0.0011 32.4 7.2 92 155-254 7-103 (418)
122 PF11242 DUF2774: Protein of u 53.0 16 0.00034 25.6 2.6 22 292-313 15-36 (63)
123 TIGR03217 4OH_2_O_val_ald 4-hy 52.6 96 0.0021 29.5 8.9 106 140-253 19-134 (333)
124 COG3653 N-acyl-D-aspartate/D-g 52.5 2.5E+02 0.0054 27.9 15.5 141 71-248 178-331 (579)
125 PRK11840 bifunctional sulfur c 52.5 2.1E+02 0.0046 27.1 11.4 70 140-210 145-216 (326)
126 PRK00730 rnpA ribonuclease P; 52.3 64 0.0014 26.6 6.6 61 126-189 47-110 (138)
127 TIGR00126 deoC deoxyribose-pho 52.2 1.1E+02 0.0024 27.0 8.7 77 73-163 130-206 (211)
128 PRK14464 ribosomal RNA large s 52.0 2.2E+02 0.0048 27.2 13.2 83 174-258 223-318 (344)
129 PRK14455 ribosomal RNA large s 51.9 1E+02 0.0022 29.6 9.0 91 166-258 223-338 (356)
130 PF00148 Oxidored_nitro: Nitro 51.8 90 0.0019 30.0 8.9 104 110-219 59-174 (398)
131 PF02638 DUF187: Glycosyl hydr 51.4 72 0.0016 29.9 7.8 72 237-308 74-161 (311)
132 cd01967 Nitrogenase_MoFe_alpha 51.1 2.4E+02 0.0051 27.2 13.4 104 110-220 72-190 (406)
133 cd00739 DHPS DHPS subgroup of 51.1 1.7E+02 0.0037 26.6 10.0 108 79-201 87-209 (257)
134 COG0635 HemN Coproporphyrinoge 50.7 1.3E+02 0.0028 29.5 9.7 61 140-202 199-276 (416)
135 PRK08195 4-hyroxy-2-oxovalerat 50.5 2.3E+02 0.005 26.9 18.0 24 72-95 22-45 (337)
136 cd01973 Nitrogenase_VFe_beta_l 49.0 2.8E+02 0.0061 27.5 15.4 111 110-221 71-193 (454)
137 PRK09490 metH B12-dependent me 49.0 4.5E+02 0.0097 29.8 17.4 201 73-309 290-524 (1229)
138 PRK14460 ribosomal RNA large s 48.8 1.7E+02 0.0038 28.0 10.1 134 110-258 171-333 (354)
139 TIGR00048 radical SAM enzyme, 48.6 1.6E+02 0.0035 28.2 9.8 92 165-258 218-334 (355)
140 PRK14476 nitrogenase molybdenu 48.6 91 0.002 30.9 8.4 103 110-219 77-198 (455)
141 TIGR00683 nanA N-acetylneurami 47.8 2.3E+02 0.005 26.1 13.9 51 70-120 16-67 (290)
142 CHL00162 thiG thiamin biosynth 47.6 1.3E+02 0.0029 27.4 8.4 53 140-192 79-139 (267)
143 cd00405 PRAI Phosphoribosylant 46.9 79 0.0017 27.4 7.0 40 162-204 73-112 (203)
144 cd07937 DRE_TIM_PC_TC_5S Pyruv 46.8 2.3E+02 0.005 25.9 16.2 132 72-216 18-162 (275)
145 PRK09856 fructoselysine 3-epim 46.7 1.3E+02 0.0027 27.1 8.6 96 195-304 3-106 (275)
146 cd03329 MR_like_4 Mandelate ra 46.5 2.7E+02 0.0058 26.6 13.6 155 73-253 143-299 (368)
147 cd08556 GDPD Glycerophosphodie 46.5 1.7E+02 0.0037 24.3 10.3 156 74-254 12-168 (189)
148 cd01821 Rhamnogalacturan_acety 46.4 1.3E+02 0.0029 25.4 8.3 111 180-306 24-151 (198)
149 TIGR01428 HAD_type_II 2-haloal 46.3 60 0.0013 27.6 6.1 63 147-210 61-127 (198)
150 PRK02901 O-succinylbenzoate sy 46.0 2.7E+02 0.0057 26.4 15.0 167 68-258 47-244 (327)
151 PF01175 Urocanase: Urocanase; 46.0 76 0.0016 31.9 7.1 91 126-227 156-258 (546)
152 cd00308 enolase_like Enolase-s 46.0 66 0.0014 28.4 6.4 88 163-258 120-208 (229)
153 cd02930 DCR_FMN 2,4-dienoyl-Co 45.9 2.7E+02 0.0059 26.4 11.7 83 127-210 203-296 (353)
154 COG0159 TrpA Tryptophan syntha 45.8 1.9E+02 0.0041 26.6 9.3 72 177-254 79-155 (265)
155 cd03318 MLE Muconate Lactonizi 45.7 41 0.00088 32.1 5.3 75 179-258 227-302 (365)
156 CHL00200 trpA tryptophan synth 45.4 2.4E+02 0.0053 25.8 13.4 33 73-105 27-59 (263)
157 cd01981 Pchlide_reductase_B Pc 45.3 3E+02 0.0066 26.8 13.6 104 110-221 70-197 (430)
158 PRK03459 rnpA ribonuclease P; 45.3 90 0.002 25.0 6.4 61 126-189 49-114 (122)
159 TIGR02534 mucon_cyclo muconate 45.0 42 0.0009 32.1 5.3 75 180-259 227-302 (368)
160 PRK09875 putative hydrolase; P 45.0 2.6E+02 0.0056 26.0 12.0 39 74-119 33-72 (292)
161 cd07937 DRE_TIM_PC_TC_5S Pyruv 45.0 1.9E+02 0.0042 26.4 9.5 16 151-166 26-41 (275)
162 cd01968 Nitrogenase_NifE_I Nit 44.9 3E+02 0.0065 26.7 14.2 105 110-221 71-189 (410)
163 PF13407 Peripla_BP_4: Peripla 44.8 1.3E+02 0.0027 26.4 8.1 74 144-222 13-86 (257)
164 COG3623 SgaU Putative L-xylulo 44.7 73 0.0016 28.8 6.2 78 43-135 65-155 (287)
165 PRK12360 4-hydroxy-3-methylbut 44.7 91 0.002 28.9 7.2 105 190-328 157-274 (281)
166 PRK09485 mmuM homocysteine met 44.5 2.7E+02 0.0058 26.0 15.6 173 74-252 45-246 (304)
167 PRK07329 hypothetical protein; 44.4 2.4E+02 0.0051 25.3 13.3 107 149-257 83-219 (246)
168 PRK05692 hydroxymethylglutaryl 44.2 67 0.0014 29.8 6.3 108 142-255 23-142 (287)
169 cd00019 AP2Ec AP endonuclease 44.1 2.4E+02 0.0052 25.4 10.0 37 153-189 17-56 (279)
170 PRK04390 rnpA ribonuclease P; 43.3 1.1E+02 0.0025 24.2 6.8 62 126-189 45-110 (120)
171 PF01120 Alpha_L_fucos: Alpha- 43.1 1E+02 0.0022 29.4 7.5 37 220-256 122-161 (346)
172 cd02069 methionine_synthase_B1 43.1 1.2E+02 0.0027 26.7 7.6 23 72-94 12-34 (213)
173 TIGR01501 MthylAspMutase methy 42.7 1.9E+02 0.004 23.6 14.3 112 75-208 15-127 (134)
174 PRK15072 bifunctional D-altron 42.7 89 0.0019 30.4 7.2 85 163-255 232-317 (404)
175 PRK11613 folP dihydropteroate 42.5 2.8E+02 0.0061 25.7 12.2 99 143-254 36-141 (282)
176 PRK08446 coproporphyrinogen II 42.4 2.1E+02 0.0045 27.2 9.6 113 78-201 98-230 (350)
177 PRK00507 deoxyribose-phosphate 42.1 1.4E+02 0.0031 26.5 7.8 28 73-100 134-161 (221)
178 PRK10550 tRNA-dihydrouridine s 41.9 3E+02 0.0065 25.8 13.1 128 74-210 74-214 (312)
179 PRK14477 bifunctional nitrogen 41.8 1.5E+02 0.0032 32.4 9.3 105 110-221 556-676 (917)
180 PRK12928 lipoyl synthase; Prov 41.7 2.9E+02 0.0063 25.6 10.6 81 174-257 185-282 (290)
181 PRK12331 oxaloacetate decarbox 41.6 1.2E+02 0.0025 30.2 7.8 12 154-165 34-45 (448)
182 TIGR03217 4OH_2_O_val_ald 4-hy 41.5 3.1E+02 0.0068 25.9 18.0 24 72-95 21-44 (333)
183 TIGR00190 thiC thiamine biosyn 41.5 3.5E+02 0.0076 26.5 11.2 146 74-259 76-225 (423)
184 PRK00087 4-hydroxy-3-methylbut 41.4 4E+02 0.0088 27.7 12.2 103 190-326 154-269 (647)
185 PRK09997 hydroxypyruvate isome 41.3 2.1E+02 0.0046 25.5 9.1 50 237-302 89-138 (258)
186 cd00950 DHDPS Dihydrodipicolin 41.2 2.8E+02 0.006 25.2 14.0 30 70-99 16-45 (284)
187 PRK14456 ribosomal RNA large s 41.0 3.4E+02 0.0073 26.2 11.1 92 165-258 237-354 (368)
188 cd03325 D-galactonate_dehydrat 41.0 1E+02 0.0022 29.3 7.2 83 163-253 202-285 (352)
189 PRK01060 endonuclease IV; Prov 40.9 1.7E+02 0.0037 26.4 8.6 92 194-303 3-104 (281)
190 TIGR02082 metH 5-methyltetrahy 40.9 3.9E+02 0.0085 30.2 12.4 171 73-258 274-476 (1178)
191 PRK03031 rnpA ribonuclease P; 40.8 1.1E+02 0.0025 24.3 6.4 62 126-189 48-114 (122)
192 COG1560 HtrB Lauroyl/myristoyl 40.6 2.5E+02 0.0055 26.3 9.6 91 76-198 110-200 (308)
193 TIGR03849 arch_ComA phosphosul 40.2 1.5E+02 0.0033 26.8 7.6 99 149-251 12-118 (237)
194 PRK09061 D-glutamate deacylase 40.2 4E+02 0.0087 26.8 11.9 115 75-200 169-285 (509)
195 COG4943 Predicted signal trans 40.1 1.4E+02 0.003 30.0 7.8 124 110-251 341-476 (524)
196 PRK01313 rnpA ribonuclease P; 40.1 1.2E+02 0.0025 24.7 6.4 60 126-188 48-113 (129)
197 PLN02951 Molybderin biosynthes 39.8 3.5E+02 0.0076 26.0 15.1 135 71-230 89-240 (373)
198 PLN02540 methylenetetrahydrofo 39.7 4.4E+02 0.0095 27.1 15.2 153 74-248 14-197 (565)
199 smart00052 EAL Putative diguan 39.7 2.5E+02 0.0053 24.2 9.2 102 145-255 99-212 (241)
200 TIGR01856 hisJ_fam histidinol 39.6 2.8E+02 0.0061 24.9 10.7 167 75-250 15-233 (253)
201 COG2896 MoaA Molybdenum cofact 39.3 3.4E+02 0.0074 25.7 11.4 124 71-217 42-181 (322)
202 PF02401 LYTB: LytB protein; 39.3 82 0.0018 29.2 6.0 105 190-328 155-274 (281)
203 COG0329 DapA Dihydrodipicolina 39.1 3.2E+02 0.007 25.4 11.4 113 142-258 22-143 (299)
204 PRK14453 chloramphenicol/florf 39.0 3.5E+02 0.0077 25.8 10.9 98 161-258 203-331 (347)
205 TIGR03822 AblA_like_2 lysine-2 38.8 3.4E+02 0.0073 25.5 11.4 96 163-259 137-240 (321)
206 COG2159 Predicted metal-depend 38.6 2.4E+02 0.0053 26.1 9.2 100 155-258 55-169 (293)
207 PRK08195 4-hyroxy-2-oxovalerat 38.5 2E+02 0.0043 27.3 8.7 13 154-166 33-45 (337)
208 TIGR00216 ispH_lytB (E)-4-hydr 38.5 1.2E+02 0.0025 28.2 6.8 111 183-327 147-272 (280)
209 PRK13352 thiamine biosynthesis 38.4 51 0.0011 32.2 4.6 64 176-251 120-185 (431)
210 PF02679 ComA: (2R)-phospho-3- 38.4 73 0.0016 28.9 5.4 100 149-251 25-131 (244)
211 cd00954 NAL N-Acetylneuraminic 38.2 3.2E+02 0.0069 25.1 14.1 51 70-120 16-67 (288)
212 TIGR02932 vnfK_nitrog V-contai 38.2 4.1E+02 0.009 26.4 14.2 108 110-221 74-197 (457)
213 COG0135 TrpF Phosphoribosylant 38.2 1E+02 0.0022 27.2 6.2 81 155-250 18-102 (208)
214 COG1387 HIS2 Histidinol phosph 37.6 3E+02 0.0065 24.6 9.8 156 76-251 17-191 (237)
215 PF04748 Polysacc_deac_2: Dive 37.5 2.8E+02 0.006 24.5 8.9 126 71-218 70-204 (213)
216 TIGR01502 B_methylAsp_ase meth 37.4 1.7E+02 0.0037 28.7 8.2 86 164-255 265-357 (408)
217 PRK14465 ribosomal RNA large s 37.3 3.6E+02 0.0079 25.7 10.2 92 165-258 215-330 (342)
218 cd00952 CHBPH_aldolase Trans-o 37.1 3.5E+02 0.0076 25.2 13.7 52 70-121 24-75 (309)
219 TIGR01285 nifN nitrogenase mol 37.1 1.6E+02 0.0034 29.0 8.0 109 110-220 76-198 (432)
220 cd01832 SGNH_hydrolase_like_1 37.0 1.9E+02 0.0041 23.9 7.7 55 237-306 96-150 (185)
221 PRK11059 regulatory protein Cs 36.8 2.2E+02 0.0048 29.4 9.5 106 142-256 495-613 (640)
222 TIGR01283 nifE nitrogenase mol 36.6 4.3E+02 0.0093 26.1 11.7 105 110-221 106-228 (456)
223 cd00954 NAL N-Acetylneuraminic 36.6 3.4E+02 0.0073 24.9 11.1 109 140-254 16-136 (288)
224 COG0502 BioB Biotin synthase a 36.5 3.6E+02 0.0077 25.7 9.9 137 70-232 82-234 (335)
225 smart00812 Alpha_L_fucos Alpha 36.5 2.3E+02 0.0049 27.5 8.9 80 220-302 112-194 (384)
226 PRK00396 rnpA ribonuclease P; 36.4 1.5E+02 0.0033 24.0 6.6 61 126-189 47-112 (130)
227 TIGR00640 acid_CoA_mut_C methy 36.4 2.3E+02 0.005 22.9 11.9 107 75-209 16-124 (132)
228 TIGR00238 KamA family protein. 36.1 3.8E+02 0.0082 25.3 13.3 130 74-217 144-282 (331)
229 cd03328 MR_like_3 Mandelate ra 35.9 3.9E+02 0.0084 25.4 11.9 152 74-253 139-293 (352)
230 COG2185 Sbm Methylmalonyl-CoA 35.3 1.5E+02 0.0032 24.6 6.2 59 192-260 17-77 (143)
231 TIGR03821 AblA_like_1 lysine-2 35.2 3.9E+02 0.0084 25.1 10.4 96 163-259 143-246 (321)
232 PRK01732 rnpA ribonuclease P; 34.9 1.8E+02 0.0038 23.0 6.5 61 126-189 46-111 (114)
233 PRK08419 lipid A biosynthesis 34.9 3.6E+02 0.0078 24.7 9.8 64 79-162 103-166 (298)
234 PLN02417 dihydrodipicolinate s 34.5 3.6E+02 0.0079 24.6 12.6 108 70-190 17-126 (280)
235 PF00290 Trp_syntA: Tryptophan 34.4 3.6E+02 0.0079 24.6 11.4 206 70-329 19-238 (259)
236 PRK00499 rnpA ribonuclease P; 34.3 1.7E+02 0.0036 22.9 6.4 61 126-189 39-104 (114)
237 PLN02591 tryptophan synthase 34.3 3.6E+02 0.0078 24.5 13.7 34 72-105 13-46 (250)
238 TIGR01163 rpe ribulose-phospha 34.3 2.9E+02 0.0062 23.6 8.5 99 142-249 8-107 (210)
239 cd07943 DRE_TIM_HOA 4-hydroxy- 34.2 2E+02 0.0043 26.0 7.8 26 142-168 19-44 (263)
240 PRK05628 coproporphyrinogen II 34.2 4.2E+02 0.0091 25.3 11.5 29 140-169 170-198 (375)
241 COG1140 NarY Nitrate reductase 34.2 22 0.00048 34.1 1.4 55 189-248 263-317 (513)
242 TIGR01496 DHPS dihydropteroate 34.1 3.6E+02 0.0078 24.5 12.0 108 79-201 86-207 (257)
243 PRK13352 thiamine biosynthesis 34.0 4.7E+02 0.01 25.7 11.2 147 74-259 76-228 (431)
244 TIGR01290 nifB nitrogenase cof 33.9 4.8E+02 0.01 25.8 11.7 111 141-259 59-200 (442)
245 PRK12268 methionyl-tRNA synthe 33.9 1.8E+02 0.0039 29.5 8.2 94 91-192 6-118 (556)
246 PF00701 DHDPS: Dihydrodipicol 33.7 3.7E+02 0.0081 24.5 10.1 108 140-254 17-135 (289)
247 PRK11194 ribosomal RNA large s 33.6 4.2E+02 0.0091 25.6 10.1 90 167-258 221-338 (372)
248 PRK13803 bifunctional phosphor 33.4 2E+02 0.0044 29.7 8.4 67 156-227 20-88 (610)
249 cd01321 ADGF Adenosine deamina 33.3 4.3E+02 0.0093 25.1 10.8 168 75-262 70-260 (345)
250 TIGR01927 menC_gamma/gm+ o-suc 33.3 1.2E+02 0.0026 28.3 6.2 87 163-259 183-270 (307)
251 cd03324 rTSbeta_L-fuconate_deh 33.2 4.7E+02 0.01 25.6 12.4 152 74-253 197-352 (415)
252 PRK04820 rnpA ribonuclease P; 33.2 2E+02 0.0043 23.9 6.8 62 126-189 49-114 (145)
253 cd01948 EAL EAL domain. This d 33.0 3.2E+02 0.0069 23.5 9.9 118 127-255 82-211 (240)
254 COG3215 PilZ Tfp pilus assembl 33.0 1.2E+02 0.0025 23.7 4.9 72 74-157 19-106 (117)
255 PRK00133 metG methionyl-tRNA s 33.0 2.4E+02 0.0053 29.5 9.0 98 91-192 5-116 (673)
256 PRK09282 pyruvate carboxylase 32.9 1.7E+02 0.0037 30.2 7.7 16 243-258 164-179 (592)
257 PLN02389 biotin synthase 32.9 4.6E+02 0.01 25.3 13.8 128 69-214 113-253 (379)
258 COG2040 MHT1 Homocysteine/sele 32.8 4.2E+02 0.009 24.8 9.7 174 74-254 42-241 (300)
259 PLN03186 DNA repair protein RA 32.5 4.5E+02 0.0097 25.1 10.3 61 149-210 110-179 (342)
260 COG1082 IolE Sugar phosphate i 32.4 3.1E+02 0.0068 24.3 8.8 109 181-303 19-141 (274)
261 COG1167 ARO8 Transcriptional r 32.0 5.1E+02 0.011 25.6 13.6 157 72-256 104-270 (459)
262 PF13378 MR_MLE_C: Enolase C-t 32.0 33 0.00071 26.5 1.9 54 199-258 4-57 (111)
263 PF08734 GYD: GYD domain; Int 31.9 2.2E+02 0.0048 21.3 7.3 65 145-209 19-90 (91)
264 TIGR00188 rnpA ribonuclease P 31.9 2E+02 0.0043 22.1 6.4 59 126-187 42-104 (105)
265 COG4130 Predicted sugar epimer 31.6 2.3E+02 0.0049 25.4 7.1 84 201-303 50-137 (272)
266 PRK15108 biotin synthase; Prov 31.5 2.9E+02 0.0064 26.2 8.7 113 142-258 76-196 (345)
267 PRK10060 RNase II stability mo 31.4 5.2E+02 0.011 26.9 11.2 116 128-254 492-619 (663)
268 PRK14470 ribosomal RNA large s 31.2 4.2E+02 0.0091 25.2 9.6 91 166-258 208-323 (336)
269 PRK14454 ribosomal RNA large s 31.2 4.7E+02 0.01 24.9 10.0 91 165-257 211-326 (342)
270 PF00809 Pterin_bind: Pterin b 31.1 3.6E+02 0.0078 23.5 11.9 87 157-255 30-125 (210)
271 PRK09427 bifunctional indole-3 30.7 1.5E+02 0.0034 29.4 6.8 65 155-228 273-339 (454)
272 PRK05660 HemN family oxidoredu 30.6 2.5E+02 0.0053 27.0 8.1 61 140-202 169-243 (378)
273 PRK05301 pyrroloquinoline quin 30.6 4.8E+02 0.01 24.8 15.0 129 70-218 44-184 (378)
274 PLN02681 proline dehydrogenase 30.6 5.5E+02 0.012 25.5 14.7 171 75-257 220-413 (455)
275 PF05049 IIGP: Interferon-indu 30.6 1.3E+02 0.0029 29.0 6.1 72 109-184 129-214 (376)
276 TIGR00035 asp_race aspartate r 30.5 2.1E+02 0.0046 25.2 7.2 62 143-205 15-89 (229)
277 TIGR01210 conserved hypothetic 30.4 3.3E+02 0.0072 25.4 8.8 25 181-205 118-144 (313)
278 PF01402 RHH_1: Ribbon-helix-h 30.4 76 0.0017 19.3 3.1 22 289-310 10-31 (39)
279 PRK07535 methyltetrahydrofolat 30.3 4.2E+02 0.0091 24.1 9.5 109 79-201 80-200 (261)
280 COG2179 Predicted hydrolase of 30.2 1.8E+02 0.0039 24.9 6.1 85 154-249 22-110 (175)
281 TIGR00655 PurU formyltetrahydr 30.0 4.5E+02 0.0097 24.3 12.8 143 78-255 15-169 (280)
282 PF01118 Semialdhyde_dh: Semia 29.9 63 0.0014 25.4 3.3 28 73-100 75-102 (121)
283 PRK13111 trpA tryptophan synth 29.9 4.3E+02 0.0093 24.0 13.4 33 73-105 24-56 (258)
284 PF00578 AhpC-TSA: AhpC/TSA fa 29.9 2E+02 0.0044 21.9 6.3 57 155-211 20-79 (124)
285 PRK14478 nitrogenase molybdenu 29.8 4.6E+02 0.0099 26.2 10.0 104 110-220 104-221 (475)
286 PRK10551 phage resistance prot 29.7 2.6E+02 0.0057 28.2 8.4 117 128-255 349-476 (518)
287 PRK01492 rnpA ribonuclease P; 29.6 2.4E+02 0.0053 22.3 6.6 60 126-187 47-114 (118)
288 PRK08776 cystathionine gamma-s 29.4 5E+02 0.011 25.1 10.1 73 183-259 116-188 (405)
289 PRK12323 DNA polymerase III su 29.3 1.8E+02 0.0039 30.6 7.0 72 142-214 104-177 (700)
290 KOG0922 DEAH-box RNA helicase 29.2 57 0.0012 33.7 3.5 39 153-193 413-451 (674)
291 cd07940 DRE_TIM_IPMS 2-isoprop 29.2 4.3E+02 0.0094 23.9 13.7 26 72-97 17-42 (268)
292 TIGR01422 phosphonatase phosph 29.1 2E+02 0.0044 25.5 6.9 38 175-213 100-137 (253)
293 PF01487 DHquinase_I: Type I 3 28.7 4E+02 0.0086 23.3 10.2 121 71-208 71-191 (224)
294 KOG0059 Lipid exporter ABCA1 a 28.6 2.4E+02 0.0051 30.7 8.3 69 140-210 668-766 (885)
295 PRK03170 dihydrodipicolinate s 28.6 4.6E+02 0.01 24.0 13.5 31 69-99 16-46 (292)
296 PRK15440 L-rhamnonate dehydrat 28.5 1E+02 0.0022 30.0 5.0 68 180-252 248-318 (394)
297 PF00762 Ferrochelatase: Ferro 28.5 2.4E+02 0.0051 26.6 7.3 90 144-257 206-299 (316)
298 cd01828 sialate_O-acetylestera 28.4 3.2E+02 0.007 22.2 8.4 99 191-307 23-130 (169)
299 cd00950 DHDPS Dihydrodipicolin 28.2 4.6E+02 0.0099 23.8 10.6 107 141-254 17-134 (284)
300 TIGR02090 LEU1_arch isopropylm 28.1 5.4E+02 0.012 24.6 10.9 25 72-96 19-43 (363)
301 TIGR00538 hemN oxygen-independ 28.0 3.6E+02 0.0078 26.6 8.9 28 140-168 213-240 (455)
302 PRK00077 eno enolase; Provisio 28.0 2.8E+02 0.0062 27.2 8.1 96 143-251 262-361 (425)
303 TIGR03586 PseI pseudaminic aci 27.9 5.3E+02 0.011 24.4 11.7 116 72-208 74-209 (327)
304 COG0031 CysK Cysteine synthase 27.9 5.1E+02 0.011 24.3 10.1 29 67-95 36-69 (300)
305 PLN00191 enolase 27.8 2.6E+02 0.0056 27.9 7.7 82 163-252 311-394 (457)
306 cd07938 DRE_TIM_HMGL 3-hydroxy 27.7 4.8E+02 0.01 23.9 14.3 25 72-96 17-41 (274)
307 PRK01222 N-(5'-phosphoribosyl) 27.7 2.4E+02 0.0052 24.7 6.9 49 142-200 64-112 (210)
308 COG2355 Zn-dependent dipeptida 27.6 3.6E+02 0.0077 25.5 8.2 30 168-198 99-128 (313)
309 PRK06294 coproporphyrinogen II 27.6 3.2E+02 0.0069 26.2 8.3 113 78-201 103-242 (370)
310 COG1509 KamA Lysine 2,3-aminom 27.6 5.7E+02 0.012 24.7 10.1 105 109-221 173-285 (369)
311 TIGR03821 AblA_like_1 lysine-2 27.6 5.2E+02 0.011 24.3 14.1 131 74-218 127-266 (321)
312 TIGR00674 dapA dihydrodipicoli 27.6 4.8E+02 0.01 23.8 14.3 51 70-120 14-64 (285)
313 PRK13753 dihydropteroate synth 27.6 5E+02 0.011 24.0 13.0 101 142-256 22-129 (279)
314 cd00019 AP2Ec AP endonuclease 27.1 3.9E+02 0.0084 24.0 8.5 86 201-303 43-138 (279)
315 cd01971 Nitrogenase_VnfN_like 27.0 4.2E+02 0.009 25.9 9.1 106 110-222 71-192 (427)
316 cd00952 CHBPH_aldolase Trans-o 27.0 3.3E+02 0.0071 25.4 8.1 105 141-253 25-142 (309)
317 COG0626 MetC Cystathionine bet 27.0 2.6E+02 0.0056 27.3 7.5 46 217-262 150-195 (396)
318 PRK14041 oxaloacetate decarbox 26.9 2.4E+02 0.0051 28.2 7.3 102 148-258 27-147 (467)
319 TIGR01284 alt_nitrog_alph nitr 26.9 6.3E+02 0.014 25.0 12.4 103 110-220 109-229 (457)
320 PF07894 DUF1669: Protein of u 26.8 3.8E+02 0.0083 24.9 8.1 68 174-250 133-201 (284)
321 PRK07003 DNA polymerase III su 26.7 2.3E+02 0.005 30.4 7.4 69 142-211 99-169 (830)
322 PF09989 DUF2229: CoA enzyme a 26.5 3.8E+02 0.0083 23.7 8.0 35 217-252 184-218 (221)
323 TIGR03700 mena_SCO4494 putativ 26.4 5.6E+02 0.012 24.3 11.4 47 142-190 79-125 (351)
324 cd03317 NAAAR N-acylamino acid 26.3 5.5E+02 0.012 24.1 12.7 152 75-258 139-291 (354)
325 KOG1350 F0F1-type ATP synthase 26.3 3.9E+02 0.0085 25.5 8.0 135 85-248 111-248 (521)
326 cd00959 DeoC 2-deoxyribose-5-p 26.2 2.9E+02 0.0063 23.9 7.1 78 70-161 126-203 (203)
327 PLN02775 Probable dihydrodipic 26.1 3.8E+02 0.0082 24.9 8.0 56 151-209 68-123 (286)
328 PRK10200 putative racemase; Pr 26.0 2.8E+02 0.006 24.7 7.1 65 143-208 15-92 (230)
329 PRK13478 phosphonoacetaldehyde 26.0 2.5E+02 0.0053 25.3 6.9 38 175-213 102-139 (267)
330 TIGR01108 oadA oxaloacetate de 25.9 2.6E+02 0.0056 28.8 7.6 102 148-252 23-137 (582)
331 PRK13561 putative diguanylate 25.9 1.7E+02 0.0037 30.1 6.5 74 176-254 533-612 (651)
332 TIGR02814 pfaD_fam PfaD family 25.8 2.5E+02 0.0053 27.9 7.1 71 182-254 35-108 (444)
333 cd04740 DHOD_1B_like Dihydroor 25.8 5.2E+02 0.011 23.6 12.6 83 74-166 101-186 (296)
334 PLN02610 probable methionyl-tR 25.7 2.8E+02 0.0061 29.8 8.0 95 91-193 20-133 (801)
335 PRK07379 coproporphyrinogen II 25.7 3.5E+02 0.0075 26.2 8.2 113 78-201 115-254 (400)
336 TIGR00398 metG methionyl-tRNA 25.5 3.6E+02 0.0079 27.1 8.6 48 144-193 67-114 (530)
337 PRK14040 oxaloacetate decarbox 25.3 3.2E+02 0.0069 28.2 8.1 101 148-251 29-142 (593)
338 PRK06553 lipid A biosynthesis 25.3 5.5E+02 0.012 23.7 10.4 64 78-161 122-185 (308)
339 KOG0053 Cystathionine beta-lya 25.3 1.5E+02 0.0033 29.0 5.5 61 201-262 148-208 (409)
340 TIGR01430 aden_deam adenosine 25.0 5.6E+02 0.012 23.7 11.3 111 142-252 65-191 (324)
341 PRK00588 rnpA ribonuclease P; 24.9 2.7E+02 0.0059 22.0 6.1 62 125-189 43-109 (118)
342 PRK11613 folP dihydropteroate 24.8 5.6E+02 0.012 23.7 9.6 108 79-201 101-222 (282)
343 COG1121 ZnuC ABC-type Mn/Zn tr 24.6 3.4E+02 0.0073 24.8 7.3 47 160-208 155-205 (254)
344 PF13289 SIR2_2: SIR2-like dom 24.6 2.4E+02 0.0052 22.2 6.0 69 176-250 73-143 (143)
345 smart00633 Glyco_10 Glycosyl h 24.6 3.3E+02 0.0071 24.4 7.4 78 177-254 136-226 (254)
346 COG4555 NatA ABC-type Na+ tran 24.2 3.6E+02 0.0078 24.1 7.0 67 140-208 103-199 (245)
347 PRK03620 5-dehydro-4-deoxygluc 24.1 5.8E+02 0.012 23.6 11.5 124 148-301 27-158 (303)
348 COG4992 ArgD Ornithine/acetylo 24.1 2.2E+02 0.0048 27.8 6.3 168 86-302 39-219 (404)
349 PRK06582 coproporphyrinogen II 24.1 4.4E+02 0.0096 25.5 8.6 29 140-169 172-200 (390)
350 PRK04147 N-acetylneuraminate l 24.0 5.6E+02 0.012 23.5 13.2 32 69-100 18-50 (293)
351 PRK08208 coproporphyrinogen II 24.0 5.7E+02 0.012 25.0 9.5 89 73-201 175-274 (430)
352 cd01834 SGNH_hydrolase_like_2 23.7 2.3E+02 0.0049 23.3 5.9 103 192-306 36-152 (191)
353 PRK15108 biotin synthase; Prov 23.7 6.4E+02 0.014 23.9 13.9 126 72-215 76-212 (345)
354 cd03320 OSBS o-Succinylbenzoat 23.6 1.5E+02 0.0033 26.7 5.0 87 163-258 153-239 (263)
355 cd08620 PI-PLCXDc_like_1 Catal 23.5 2.4E+02 0.0051 26.2 6.2 18 81-98 36-53 (281)
356 KOG2499 Beta-N-acetylhexosamin 23.5 2.8E+02 0.006 27.9 6.8 25 149-173 198-222 (542)
357 PRK04820 rnpA ribonuclease P; 23.5 3.2E+02 0.0068 22.6 6.4 32 127-160 86-117 (145)
358 PTZ00081 enolase; Provisional 23.4 4.4E+02 0.0095 26.1 8.4 98 142-252 281-382 (439)
359 PF06415 iPGM_N: BPG-independe 23.4 3.4E+02 0.0073 24.3 6.9 76 176-251 13-99 (223)
360 TIGR02313 HpaI-NOT-DapA 2,4-di 23.3 5.9E+02 0.013 23.4 9.5 105 148-252 20-133 (294)
361 TIGR01182 eda Entner-Doudoroff 23.3 2.6E+02 0.0056 24.6 6.2 88 143-251 18-106 (204)
362 PRK00038 rnpA ribonuclease P; 23.2 3.9E+02 0.0085 21.4 7.1 62 125-188 50-119 (123)
363 COG2873 MET17 O-acetylhomoseri 23.1 4E+02 0.0086 26.0 7.6 121 77-225 66-186 (426)
364 PRK07094 biotin synthase; Prov 23.0 6.1E+02 0.013 23.5 15.0 127 72-217 70-209 (323)
365 COG0497 RecN ATPase involved i 23.0 1.1E+02 0.0024 31.3 4.1 32 278-309 294-325 (557)
366 PRK06015 keto-hydroxyglutarate 22.8 2.4E+02 0.0051 24.8 5.8 88 143-251 14-102 (201)
367 cd03314 MAL Methylaspartate am 22.8 5.2E+02 0.011 24.9 8.7 86 165-255 229-321 (369)
368 cd07945 DRE_TIM_CMS Leptospira 22.8 6E+02 0.013 23.3 12.2 69 143-213 109-186 (280)
369 TIGR02109 PQQ_syn_pqqE coenzym 22.7 6.4E+02 0.014 23.7 14.1 128 71-218 36-175 (358)
370 cd04731 HisF The cyclase subun 22.7 5.3E+02 0.012 22.7 13.2 117 75-210 84-213 (243)
371 PF10668 Phage_terminase: Phag 22.7 70 0.0015 22.3 1.9 17 292-308 24-40 (60)
372 COG0159 TrpA Tryptophan syntha 22.6 6.1E+02 0.013 23.3 17.0 204 73-328 29-244 (265)
373 COG0422 ThiC Thiamine biosynth 22.5 7.3E+02 0.016 24.2 12.3 136 74-250 77-221 (432)
374 PLN02224 methionine-tRNA ligas 22.4 5.1E+02 0.011 26.9 9.0 104 86-192 67-183 (616)
375 TIGR00290 MJ0570_dom MJ0570-re 22.4 5.6E+02 0.012 22.8 9.1 126 150-304 49-175 (223)
376 PRK14468 ribosomal RNA large s 22.3 6.8E+02 0.015 23.8 11.3 93 165-259 206-323 (343)
377 cd06300 PBP1_ABC_sugar_binding 22.3 5.3E+02 0.011 22.5 9.7 74 144-221 14-90 (272)
378 PRK09776 putative diguanylate 22.3 2.3E+02 0.0049 31.1 6.9 115 129-254 926-1052(1092)
379 TIGR01286 nifK nitrogenase mol 22.2 5E+02 0.011 26.3 8.8 108 110-221 127-252 (515)
380 PF00072 Response_reg: Respons 22.1 2.6E+02 0.0057 20.5 5.5 54 154-209 35-90 (112)
381 cd01994 Alpha_ANH_like_IV This 22.0 5.2E+02 0.011 22.3 11.2 100 149-259 48-150 (194)
382 PF05990 DUF900: Alpha/beta hy 22.0 5.6E+02 0.012 22.7 9.6 95 110-213 5-115 (233)
383 PF14606 Lipase_GDSL_3: GDSL-l 21.9 3.7E+02 0.0079 23.1 6.6 77 99-190 43-135 (178)
384 PRK13505 formate--tetrahydrofo 21.8 1.3E+02 0.0028 30.7 4.3 55 203-258 359-413 (557)
385 TIGR01060 eno phosphopyruvate 21.8 5.5E+02 0.012 25.2 8.8 81 163-251 278-362 (425)
386 PRK13010 purU formyltetrahydro 21.8 6.5E+02 0.014 23.3 14.3 143 78-255 24-178 (289)
387 PF07287 DUF1446: Protein of u 21.7 3.7E+02 0.008 25.9 7.3 39 237-303 62-100 (362)
388 TIGR02026 BchE magnesium-proto 21.7 8.1E+02 0.018 24.5 11.3 68 175-247 321-392 (497)
389 PRK07534 methionine synthase I 21.7 6.9E+02 0.015 23.7 16.2 176 74-254 44-240 (336)
390 PF01081 Aldolase: KDPG and KH 21.7 2.5E+02 0.0053 24.5 5.7 60 179-251 46-106 (196)
391 TIGR00737 nifR3_yhdG putative 21.6 6.6E+02 0.014 23.3 12.5 140 74-229 74-226 (319)
392 cd03466 Nitrogenase_NifN_2 Nit 21.6 7.6E+02 0.017 24.1 10.1 102 110-219 69-184 (429)
393 PRK05660 HemN family oxidoredu 21.5 7.2E+02 0.016 23.8 11.7 42 175-216 141-187 (378)
394 PRK09061 D-glutamate deacylase 21.5 7.4E+02 0.016 24.9 9.9 18 175-192 197-214 (509)
395 cd04734 OYE_like_3_FMN Old yel 21.4 7E+02 0.015 23.6 14.4 24 71-94 130-160 (343)
396 PRK02261 methylaspartate mutas 21.4 4.5E+02 0.0097 21.3 13.7 111 76-208 18-129 (137)
397 PRK14834 undecaprenyl pyrophos 21.3 6.2E+02 0.014 23.0 8.6 65 149-213 48-125 (249)
398 PF08013 Tagatose_6_P_K: Tagat 21.3 96 0.0021 30.4 3.2 52 43-96 77-130 (424)
399 cd01320 ADA Adenosine deaminas 21.1 6.6E+02 0.014 23.2 10.8 111 142-252 66-192 (325)
400 PRK14340 (dimethylallyl)adenos 21.1 8E+02 0.017 24.2 13.0 24 69-92 175-198 (445)
401 PF09370 TIM-br_sig_trns: TIM- 21.0 1.9E+02 0.0042 26.6 4.9 59 138-202 59-117 (268)
402 PF14871 GHL6: Hypothetical gl 21.0 63 0.0014 26.3 1.7 20 237-256 48-67 (132)
403 PRK03892 ribonuclease P protei 21.0 5.9E+02 0.013 22.6 13.0 139 127-303 28-168 (216)
404 PF01964 ThiC: ThiC family; I 20.9 8.1E+02 0.017 24.1 9.7 144 74-258 75-227 (420)
405 PRK09989 hypothetical protein; 20.8 6E+02 0.013 22.6 9.5 52 237-304 89-140 (258)
406 PRK08645 bifunctional homocyst 20.8 9.4E+02 0.02 24.8 13.0 96 74-170 42-146 (612)
407 PRK15063 isocitrate lyase; Pro 20.8 5.2E+02 0.011 25.6 8.1 143 75-220 161-343 (428)
408 cd06311 PBP1_ABC_sugar_binding 20.6 5.8E+02 0.013 22.3 9.6 75 144-221 14-90 (274)
409 smart00518 AP2Ec AP endonuclea 20.6 5.2E+02 0.011 23.0 8.0 71 180-252 13-103 (273)
410 PLN02746 hydroxymethylglutaryl 20.6 7.5E+02 0.016 23.6 15.0 26 72-97 65-90 (347)
411 PF13685 Fe-ADH_2: Iron-contai 20.5 4.4E+02 0.0096 23.9 7.3 103 110-226 7-109 (250)
412 PRK12581 oxaloacetate decarbox 20.5 8.7E+02 0.019 24.3 14.8 156 72-247 102-263 (468)
413 cd00338 Ser_Recombinase Serine 20.4 1.9E+02 0.0042 22.6 4.5 42 149-190 52-95 (137)
414 PRK08508 biotin synthase; Prov 20.4 6.2E+02 0.013 23.1 8.4 116 142-258 40-162 (279)
415 PRK05799 coproporphyrinogen II 20.4 5.2E+02 0.011 24.6 8.3 89 73-201 133-238 (374)
416 cd08557 PI-PLCc_bacteria_like 20.3 2.2E+02 0.0048 25.4 5.4 19 80-98 42-60 (271)
417 COG1801 Uncharacterized conser 20.3 6.7E+02 0.014 22.9 11.2 81 81-174 29-115 (263)
418 PRK09389 (R)-citramalate synth 20.3 8.8E+02 0.019 24.3 10.6 25 72-96 21-45 (488)
419 PRK08905 lipid A biosynthesis 20.3 5.9E+02 0.013 23.3 8.3 63 78-161 90-152 (289)
420 PRK14865 rnpA ribonuclease P; 20.3 4.3E+02 0.0093 20.7 6.7 60 126-188 46-109 (116)
421 TIGR00674 dapA dihydrodipicoli 20.3 6.6E+02 0.014 22.9 10.6 107 141-254 15-132 (285)
422 PRK10508 hypothetical protein; 20.1 1.5E+02 0.0033 28.1 4.3 43 142-188 286-328 (333)
423 TIGR01579 MiaB-like-C MiaB-lik 20.1 8E+02 0.017 23.7 11.5 24 69-92 164-187 (414)
424 PRK02842 light-independent pro 20.1 8.2E+02 0.018 23.9 10.5 101 110-219 81-194 (427)
425 TIGR00510 lipA lipoate synthas 20.0 7.2E+02 0.016 23.2 13.6 167 73-257 92-285 (302)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=1.3e-60 Score=446.75 Aligned_cols=272 Identities=36% Similarity=0.551 Sum_probs=243.5
Q ss_pred ceeeecCCCCcccccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHH
Q 020098 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR 115 (331)
Q Consensus 36 m~~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~ 115 (331)
|++|+||++|++||+||||||.+|+. ..+.+++++.++|++|+|+||||||||+.||.|.| |++||+
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~-------~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~s------E~ilG~ 67 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGD-------TDDEEEAEAIEILDAALDAGINFFDTADVYGDGRS------EEILGE 67 (316)
T ss_pred CCceecCCCCceecceeeeccccCCC-------CCchhhhHHHHHHHHHHHcCCCEEECccccCCCch------HHHHHH
Confidence 78999999999999999999999884 23455678889999999999999999999999987 999999
Q ss_pred HHHhccCCCCCCcEEEEecCCCCC--------CCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCC-CChHHHHHHHHHH
Q 020098 116 FIKERKQRDPEVEVTVATKFAALP--------WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDA 186 (331)
Q Consensus 116 ~l~~~~~~~~R~~~~i~tK~~~~~--------~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~-~~~~~~~~~L~~l 186 (331)
||+.++. |++++|+||++... .+.++++|+++++.||+|||||||||||+||||. .+.++++.+|++|
T Consensus 68 ~l~~~~~---Rd~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l 144 (316)
T COG0667 68 ALKERGR---RDKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDEL 144 (316)
T ss_pred HHhccCC---CCeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHH
Confidence 9999873 79999999998743 3568999999999999999999999999999998 7789999999999
Q ss_pred HHcCceeEEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHHHHHcCCeEEEcccCccccccCCCCC
Q 020098 187 VEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTP 266 (331)
Q Consensus 187 ~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~ 266 (331)
+++|||++||+||++.+++.++.+.+ .+++++|.+||+++|+.+. +++++|+++||++++|+|+++|+||+|+..
T Consensus 145 ~~~G~ir~iG~S~~~~~~i~~a~~~~----~~~~~~Q~~ynl~~R~~e~-~l~~~~~~~gi~~~~~spla~G~Ltgk~~~ 219 (316)
T COG0667 145 VREGKIRYIGVSNYSAEQIAEALAVA----APIDSLQPEYNLLERDAEK-ELLPLCREEGIGLLAYSPLASGLLTGKYLP 219 (316)
T ss_pred HHcCCeeEEEecCCCHHHHHHHHHhc----CCceeecccCccccccchh-HHHHHHHHcCCeEEEecCccccccCCCcCC
Confidence 99999999999999999999998763 4799999999999986665 499999999999999999999999999997
Q ss_pred CCCCCCCCC---CccchhHHhhHHHHHHHHHHHHHhcCCCHHHHHHHhhh-------hcccccchHHHHHhhcc
Q 020098 267 QNPPTGPRG---RIYTAEYLRNLQPLLNRIKELGENYSKTSTQNSPCMSN-------SLAKQILFQQLEKCLTI 330 (331)
Q Consensus 267 ~~~p~~~~~---~~~~~~~~~~~~~~~~~l~~la~~~g~s~~qval~~~l-------~~~g~~~~~~l~enl~~ 330 (331)
+ +.+.+. ..+..+..++..+.+..++++|+++|+|++|+||+|++ +++|+++++||++|++.
T Consensus 220 ~--~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A 291 (316)
T COG0667 220 G--PEGSRASELPRFQRELTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAA 291 (316)
T ss_pred C--cchhhccccccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHH
Confidence 6 333332 23455677888899999999999999999999999987 47999999999999964
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=4.6e-59 Score=429.72 Aligned_cols=282 Identities=34% Similarity=0.507 Sum_probs=246.0
Q ss_pred cccccceeeecCCCCcccccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchH
Q 020098 31 TVKTAEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSE 110 (331)
Q Consensus 31 ~~~~~m~~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE 110 (331)
+....|+++++|++|++||++|||||.+... .+. .+++++++++++|+|+|+||||||+.||+|.+ |
T Consensus 7 ~~~~~~~~~~lg~~gl~Vs~lglG~m~~~~~------~~~-~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~------E 73 (336)
T KOG1575|consen 7 STELGMLRRKLGNSGLKVSPLGLGCMGWTTF------GGQ-IDKEEAFELLDHAYEAGINFFDTAEVYGNGQS------E 73 (336)
T ss_pred cchhcceeeeccCCCceecceeecceeeecc------ccC-CCHHHHHHHHHHHHHcCCCEEehhhhcCCccc------H
Confidence 3444899999999999999999999843222 223 68899999999999999999999999999988 9
Q ss_pred HHHHHHHHhccCCCCCCcEEEEecCCCC-----CCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCC-CChHHHHHHHH
Q 020098 111 TLLGRFIKERKQRDPEVEVTVATKFAAL-----PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLG 184 (331)
Q Consensus 111 ~~iG~~l~~~~~~~~R~~~~i~tK~~~~-----~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~-~~~~~~~~~L~ 184 (331)
+++|++|++.+.. |++++|+||++.. +...++.++...++.|+++||++||||||+||+|+ .+.+++|++|.
T Consensus 74 ~llg~~i~~~~~~--R~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~ 151 (336)
T KOG1575|consen 74 ELLGEFIKSRGWR--RDKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALT 151 (336)
T ss_pred HHHHHHHHhcCCc--CCcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHH
Confidence 9999999998743 8999999999763 35678999999999999999999999999999998 78999999999
Q ss_pred HHHHcCceeEEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHHHHHcCCeEEEcccCccccccCCC
Q 020098 185 DAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKY 264 (331)
Q Consensus 185 ~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~L~~~~ 264 (331)
+++++|||++||+|+++.+++.++..+++ ++|.++|++||++.|..++.++++.|++.||++++||||++|+||++|
T Consensus 152 ~lve~Gki~yiGlSe~sa~~I~~a~~~~~---~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~ 228 (336)
T KOG1575|consen 152 DLVEQGKIRYWGLSEWSAEEIREAHAVAP---IPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKY 228 (336)
T ss_pred HHHhcCceEEEEeccCCHHHHHHHHHhcC---CCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCc
Confidence 99999999999999999999999988854 679999999999999988888999999999999999999999999999
Q ss_pred CCCC-CCCCCCCCccch--hHH---hhHHHHHHHHHHHHHhcCCCHHHHHHHhhh-------hcccccchHHHHHhhcc
Q 020098 265 TPQN-PPTGPRGRIYTA--EYL---RNLQPLLNRIKELGENYSKTSTQNSPCMSN-------SLAKQILFQQLEKCLTI 330 (331)
Q Consensus 265 ~~~~-~p~~~~~~~~~~--~~~---~~~~~~~~~l~~la~~~g~s~~qval~~~l-------~~~g~~~~~~l~enl~~ 330 (331)
.... .|.+.....+.. +.. +..++.++++.++|+|+|+|++|+||+|++ ++||+++++||+||+.+
T Consensus 229 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~A 307 (336)
T KOG1575|consen 229 KLGEDSRNGDKRFQFLGLSPQTEEGDKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGA 307 (336)
T ss_pred ccccccccccccccccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhh
Confidence 8543 344433211111 111 567888999999999999999999999976 68999999999999974
No 3
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=3.6e-56 Score=423.21 Aligned_cols=280 Identities=29% Similarity=0.390 Sum_probs=234.2
Q ss_pred cccceeeecCCCCcccccceecccc-cCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCeEECCcCcCC--CCCCCCCch
Q 020098 33 KTAEDKVKLGGSDLKVTKLGVGAWS-WGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGS--RASFGAINS 109 (331)
Q Consensus 33 ~~~m~~r~lg~tg~~vs~lglG~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~--g~~~~~~~s 109 (331)
.+.|+||+||+||++||+||||||+ +|.. .+.+++.++|++|++.|||+||||+.||+ |.+
T Consensus 10 ~~~m~~r~lg~tg~~vs~lglG~~~~~g~~----------~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~s------ 73 (346)
T PRK09912 10 YGQMQYRYCGKSGLRLPALSLGLWHNFGHV----------NALESQRAILRKAFDLGITHFDLANNYGPPPGSA------ 73 (346)
T ss_pred CCCcceeecCCCCcccccccccCccccCCC----------CCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCc------
Confidence 3469999999999999999999996 3321 24578899999999999999999999995 777
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCC--C----CCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCC-CChHHHHHH
Q 020098 110 ETLLGRFIKERKQRDPEVEVTVATKFAAL--P----WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDG 182 (331)
Q Consensus 110 E~~iG~~l~~~~~~~~R~~~~i~tK~~~~--~----~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~-~~~~~~~~~ 182 (331)
|+.+|++|+..... .|+++||+||+|.. + .+.+++.+++++++||++||+||||+|++|||+. .+.+++|++
T Consensus 74 E~~lG~~l~~~~~~-~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~a 152 (346)
T PRK09912 74 EENFGRLLREDFAA-YRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASA 152 (346)
T ss_pred HHHHHHHHHhcccC-CCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHH
Confidence 99999999864211 28999999998742 1 2357999999999999999999999999999986 568899999
Q ss_pred HHHHHHcCceeEEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHHHHHcCCeEEEcccCccccccC
Q 020098 183 LGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTG 262 (331)
Q Consensus 183 L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~L~~ 262 (331)
|++|+++|||++||||||++++++++.+.+...+++++++|++||++++..+..+++++|+++||++++|+||++|+|++
T Consensus 153 l~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~ 232 (346)
T PRK09912 153 LAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTG 232 (346)
T ss_pred HHHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccC
Confidence 99999999999999999999999988887766667889999999999987654469999999999999999999999999
Q ss_pred CCCCCCCCCCCCC-------CccchhH-HhhHHHHHHHHHHHHHhcCCCHHHHHHHhhh-------hcccccchHHHHHh
Q 020098 263 KYTPQNPPTGPRG-------RIYTAEY-LRNLQPLLNRIKELGENYSKTSTQNSPCMSN-------SLAKQILFQQLEKC 327 (331)
Q Consensus 263 ~~~~~~~p~~~~~-------~~~~~~~-~~~~~~~~~~l~~la~~~g~s~~qval~~~l-------~~~g~~~~~~l~en 327 (331)
++.... |.+.+. +.+.+.. .+...++++.+.++|+++|+|++|+||+|++ +++|+++++||+||
T Consensus 233 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en 311 (346)
T PRK09912 233 KYLNGI-PQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEEN 311 (346)
T ss_pred CCCCCC-CCCccccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHH
Confidence 986543 222110 0122222 2345566789999999999999999999987 36899999999999
Q ss_pred hcc
Q 020098 328 LTI 330 (331)
Q Consensus 328 l~~ 330 (331)
+++
T Consensus 312 ~~a 314 (346)
T PRK09912 312 VQA 314 (346)
T ss_pred Hhh
Confidence 975
No 4
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=1.3e-55 Score=414.76 Aligned_cols=275 Identities=25% Similarity=0.336 Sum_probs=229.8
Q ss_pred eeecCCCCcccccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHH
Q 020098 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (331)
Q Consensus 38 ~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l 117 (331)
||+||+||++||+||||||.+.+. ..+++++.++|++|+++|||+||||+.||.|.| |+++|+||
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~g~---------~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~s------E~~lG~~l 65 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTFGG---------QISDEMAEQLLTLAYENGINLFDTAEVYAAGKA------EVVLGNIL 65 (317)
T ss_pred CcccCCCCCeecceeecCCccCCC---------CCCHHHHHHHHHHHHHcCCCeEECccccCCCcc------HHHHHHHH
Confidence 589999999999999999973221 245688999999999999999999999999887 99999999
Q ss_pred HhccCCCCCCcEEEEecCCCC-----CCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCC-CChHHHHHHHHHHHHcCc
Q 020098 118 KERKQRDPEVEVTVATKFAAL-----PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGL 191 (331)
Q Consensus 118 ~~~~~~~~R~~~~i~tK~~~~-----~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~-~~~~~~~~~L~~l~~~G~ 191 (331)
+.... +|++++|+||++.. ..+++++.+++++++||++||+||||+|++|||+. .+.+++|++|++|+++||
T Consensus 66 ~~~~~--~R~~~~iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ 143 (317)
T TIGR01293 66 KKKGW--RRSSYVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGM 143 (317)
T ss_pred HhcCC--CcccEEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCC
Confidence 86421 28999999998531 12467999999999999999999999999999987 567899999999999999
Q ss_pred eeEEEeecCcHHHHHHHHHHHHhcC-CCeeeeeecccccccCccccchhHHHHHcCCeEEEcccCccccccCCCCCCCCC
Q 020098 192 VKAVGVSNYSEKRLRNAYEKLKKRG-IPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPP 270 (331)
Q Consensus 192 i~~iGvs~~~~~~l~~~~~~~~~~~-~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p 270 (331)
|++||+|||+.++++++...+...+ ++++++|++||+++++..+.+++++|+++||++++|+||++|+|++++.... |
T Consensus 144 ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~~-~ 222 (317)
T TIGR01293 144 AMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSGI-P 222 (317)
T ss_pred eeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCCC-C
Confidence 9999999999999988877666555 5789999999999997533469999999999999999999999999986542 3
Q ss_pred CCCCCC-----ccch----hHHhhHHHHHHHHHHHHHhcCCCHHHHHHHhhh-------hcccccchHHHHHhhcc
Q 020098 271 TGPRGR-----IYTA----EYLRNLQPLLNRIKELGENYSKTSTQNSPCMSN-------SLAKQILFQQLEKCLTI 330 (331)
Q Consensus 271 ~~~~~~-----~~~~----~~~~~~~~~~~~l~~la~~~g~s~~qval~~~l-------~~~g~~~~~~l~enl~~ 330 (331)
.+.+.. ++.. +......+.++.++++|+++|+|++|+||+|++ +++|+++++||++|++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a 298 (317)
T TIGR01293 223 PYSRATLKGYQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGS 298 (317)
T ss_pred CcccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHH
Confidence 232211 1111 112234566788999999999999999999987 36889999999999875
No 5
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=4.5e-56 Score=402.69 Aligned_cols=237 Identities=32% Similarity=0.513 Sum_probs=213.2
Q ss_pred cceeeecCCCCcccccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHH
Q 020098 35 AEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLG 114 (331)
Q Consensus 35 ~m~~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG 114 (331)
+|.+.+|++ |.+||.||||||++++. +...+.+.+|++.|+|+||||..||| |+.+|
T Consensus 2 ~~~~~~l~~-g~~iP~iGlGt~~~~~~-------------~~~~~av~~Al~~Gyr~IDTA~~Ygn---------E~~VG 58 (280)
T COG0656 2 MKTKVTLNN-GVEIPAIGLGTWQIGDD-------------EWAVRAVRAALELGYRLIDTAEIYGN---------EEEVG 58 (280)
T ss_pred CCceeecCC-CCcccCcceEeeecCCc-------------hhHHHHHHHHHHhCcceEecHhHhcC---------HHHHH
Confidence 466788988 88899999999998875 44889999999999999999999998 99999
Q ss_pred HHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCC--C-hHHHHHHHHHHHHcCc
Q 020098 115 RFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW--G-NEGFIDGLGDAVEQGL 191 (331)
Q Consensus 115 ~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~--~-~~~~~~~L~~l~~~G~ 191 (331)
++|+... ++|+++||+||+|. .+.+++.+.+++++||++||+||||||+||||.+. . ..++|++|++++++||
T Consensus 59 ~aI~~s~--v~ReelFittKvw~--~~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ 134 (280)
T COG0656 59 EAIKESG--VPREELFITTKVWP--SDLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGL 134 (280)
T ss_pred HHHHhcC--CCHHHeEEEeecCC--ccCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCC
Confidence 9999943 35999999999987 66789999999999999999999999999999752 2 5799999999999999
Q ss_pred eeEEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHHHHHcCCeEEEcccCccccccCCCCCCCCCC
Q 020098 192 VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPT 271 (331)
Q Consensus 192 i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~ 271 (331)
||+||||||+.++++++++. .++.|.++|++||++.++.+ ++++|+++||.+++||||++|..
T Consensus 135 ir~IGVSNF~~~~L~~l~~~---~~~~p~~NQIe~hp~~~q~e---l~~~~~~~gI~v~AysPL~~g~~----------- 197 (280)
T COG0656 135 IRAIGVSNFGVEHLEELLSL---AKVKPAVNQIEYHPYLRQPE---LLPFCQRHGIAVEAYSPLAKGGK----------- 197 (280)
T ss_pred ccEEEeeCCCHHHHHHHHHh---cCCCCceEEEEeccCCCcHH---HHHHHHHcCCEEEEECCcccccc-----------
Confidence 99999999999999999776 44789999999999999986 99999999999999999997531
Q ss_pred CCCCCccchhHHhhHHHHHHHHHHHHHhcCCCHHHHHHHhhh-----hcccccchHHHHHhhcc
Q 020098 272 GPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQNSPCMSN-----SLAKQILFQQLEKCLTI 330 (331)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~qval~~~l-----~~~g~~~~~~l~enl~~ 330 (331)
++..+ .+.++|++||.|++|++|+|++ ++|.+++++|++||+.+
T Consensus 198 -----l~~~~----------~l~~Ia~k~g~t~AQv~L~W~i~~gv~~Ipks~~~~ri~eN~~~ 246 (280)
T COG0656 198 -----LLDNP----------VLAEIAKKYGKTPAQVALRWHIQRGVIVIPKSTTPERIRENLAA 246 (280)
T ss_pred -----cccCh----------HHHHHHHHhCCCHHHHHHHHHHhCCcEEecCCCCHHHHHHHHhh
Confidence 23333 8999999999999999999987 57999999999999975
No 6
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=4.1e-55 Score=416.18 Aligned_cols=275 Identities=26% Similarity=0.398 Sum_probs=231.7
Q ss_pred ceeeecCCCCcccccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCeEECCcCcCC-------CCCCCCCc
Q 020098 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGS-------RASFGAIN 108 (331)
Q Consensus 36 m~~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~-------g~~~~~~~ 108 (331)
|+||+||+||++||+||||||+||.. .+++++.++|++|++.||||||||+.||. |.+
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~~----------~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~s----- 65 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGEQ----------NSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLT----- 65 (346)
T ss_pred CCceecCCCCCccccEeEeccccCCC----------CCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCch-----
Confidence 78999999999999999999998753 34689999999999999999999999984 665
Q ss_pred hHHHHHHHHHhccCCCCCCcEEEEecCCCCC----------CCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCC-----
Q 020098 109 SETLLGRFIKERKQRDPEVEVTVATKFAALP----------WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI----- 173 (331)
Q Consensus 109 sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~----------~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~----- 173 (331)
|+.+|++|+..+ +|++++|+||++... ..++++.+++++++||++||+||||||++|||+.
T Consensus 66 -E~~iG~aL~~~~---~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~ 141 (346)
T PRK10625 66 -ETYIGNWLAKRG---SREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCF 141 (346)
T ss_pred -HHHHHHHHhhcC---CcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccc
Confidence 999999998643 289999999985311 1468999999999999999999999999999864
Q ss_pred -------------CChHHHHHHHHHHHHcCceeEEEeecCcHHHHHHHHHHHHhcCC-CeeeeeecccccccCccccchh
Q 020098 174 -------------WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGI-PLASNQVNYSLIYRKPEENGVK 239 (331)
Q Consensus 174 -------------~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~-~~~~~q~~~n~~~~~~~~~~~l 239 (331)
.+.+++|++|++|+++|||++||+|||+.++++++...+...+. .+.++|++||++++..+. +++
T Consensus 142 ~~~~~~~~~~~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~-~ll 220 (346)
T PRK10625 142 GKLGYSWTDSAPAVSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEV-GLA 220 (346)
T ss_pred cccccccccccCCCCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchh-HHH
Confidence 24679999999999999999999999999999988776665554 588999999999987543 599
Q ss_pred HHHHHcCCeEEEcccCccccccCCCCCCCCCCCCCCCcc---chhHHhhHHHHHHHHHHHHHhcCCCHHHHHHHhhhh--
Q 020098 240 AACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIY---TAEYLRNLQPLLNRIKELGENYSKTSTQNSPCMSNS-- 314 (331)
Q Consensus 240 ~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~---~~~~~~~~~~~~~~l~~la~~~g~s~~qval~~~l~-- 314 (331)
++|+++||++++|+||++|+|++++.....|.+.+...+ .+.......++++.+.++|+++|+|++|+||+|+++
T Consensus 221 ~~~~~~gi~via~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~ 300 (346)
T PRK10625 221 EVSQYEGVELLAYSCLAFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQP 300 (346)
T ss_pred HHHHHcCCeEEEeccccCeeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCC
Confidence 999999999999999999999999865544444321112 111123455677899999999999999999999873
Q ss_pred -----cccccchHHHHHhhcc
Q 020098 315 -----LAKQILFQQLEKCLTI 330 (331)
Q Consensus 315 -----~~g~~~~~~l~enl~~ 330 (331)
++|+++++||+||+++
T Consensus 301 ~v~~~I~G~~~~~~l~en~~a 321 (346)
T PRK10625 301 FVASTLLGATTMEQLKTNIES 321 (346)
T ss_pred CCeeEEeCCCCHHHHHHHHhh
Confidence 6899999999999975
No 7
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=6.4e-54 Score=402.93 Aligned_cols=265 Identities=24% Similarity=0.296 Sum_probs=223.1
Q ss_pred eeecCCCCcccccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHH
Q 020098 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (331)
Q Consensus 38 ~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l 117 (331)
||+||+||++||.||||||+||+. | +..+++++.++|++|++.|||+||||+.||+|.+ |+.+|++|
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~--~-----~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s------E~~lG~al 67 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSV--F-----GPVSEEDAIASVREAFRLGINFFDTSPYYGGTLS------EKVLGKAL 67 (314)
T ss_pred CCcCCCCCCcccCcccccccccCC--C-----CCCCHHHHHHHHHHHHHcCCCEEECcCccCCCch------HHHHHHHH
Confidence 689999999999999999998864 3 2356789999999999999999999999999987 99999999
Q ss_pred HhccCCCCCCcEEEEecCCCCC--CCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCC----CChHHHHHHHHHHHHcCc
Q 020098 118 KERKQRDPEVEVTVATKFAALP--WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI----WGNEGFIDGLGDAVEQGL 191 (331)
Q Consensus 118 ~~~~~~~~R~~~~i~tK~~~~~--~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~----~~~~~~~~~L~~l~~~G~ 191 (331)
++.+. +|+++||+||++... .+++++.+++++++||++||+||||+|++|+|+. ...+++|++|++|+++||
T Consensus 68 ~~~~~--~R~~v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gk 145 (314)
T PLN02587 68 KALGI--PREKYVVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGK 145 (314)
T ss_pred HhCCC--CcceEEEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCC
Confidence 98542 389999999997532 3578999999999999999999999999999974 235689999999999999
Q ss_pred eeEEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHHHHHcCCeEEEcccCccccccCCCCCCCCCC
Q 020098 192 VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPT 271 (331)
Q Consensus 192 i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~ 271 (331)
|++||+|||++++++.+.+.+....+.+.++|..||+.++..+ +++++|+++||++++|+||++|+|++++.....+
T Consensus 146 ir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~- 222 (314)
T PLN02587 146 VRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSLE--DLLPYLKSKGVGVISASPLAMGLLTENGPPEWHP- 222 (314)
T ss_pred eEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhHH--HHHHHHHHcCceEEEechhhccccCCCCCCCCCC-
Confidence 9999999999998888766433222455667899999876544 5999999999999999999999999875211111
Q ss_pred CCCCCccchhHHhhHHHHHHHHHHHHHhcCCCHHHHHHHhhhh-------cccccchHHHHHhhcc
Q 020098 272 GPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQNSPCMSNS-------LAKQILFQQLEKCLTI 330 (331)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~qval~~~l~-------~~g~~~~~~l~enl~~ 330 (331)
..+...++++.++++|+++|+|++|+||+|+++ ++|+++++||++|+++
T Consensus 223 ----------~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a 278 (314)
T PLN02587 223 ----------APPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAA 278 (314)
T ss_pred ----------CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHH
Confidence 012345666789999999999999999999873 6799999999999875
No 8
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=2.2e-50 Score=373.51 Aligned_cols=257 Identities=40% Similarity=0.622 Sum_probs=225.1
Q ss_pred eeecCCCCcccccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHH
Q 020098 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (331)
Q Consensus 38 ~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l 117 (331)
+|+||+||++||+||||||.++.. | .+.+++.++++.|++.|||+||||+.||+|.+ |+.+|++|
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~--~-------~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~s------E~~lG~al 65 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGG--Y-------VDEEEAAAAVRAALDAGINFIDTADVYGDGES------EELLGEAL 65 (285)
T ss_pred CcccCCCCceecCcceeccccCCC--C-------CCHHHHHHHHHHHHHcCCCeEECccccCCCCC------HHHHHHHH
Confidence 588999999999999999998764 1 45789999999999999999999999999987 99999999
Q ss_pred HhccCCCCCCcEEEEecCCCCC---CCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCC-C-hHHHHHHHHHHHHcCce
Q 020098 118 KERKQRDPEVEVTVATKFAALP---WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-G-NEGFIDGLGDAVEQGLV 192 (331)
Q Consensus 118 ~~~~~~~~R~~~~i~tK~~~~~---~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~-~-~~~~~~~L~~l~~~G~i 192 (331)
+..+ +|+++||+||++... .+++++.+++++++||++||+||||+|+||+|+.. . ..++|++|++++++|+|
T Consensus 66 ~~~~---~R~~~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~i 142 (285)
T cd06660 66 KERG---PREEVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKI 142 (285)
T ss_pred hccC---CcCcEEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCc
Confidence 9876 389999999998642 23689999999999999999999999999999873 2 78999999999999999
Q ss_pred eEEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHHHHHcCCeEEEcccCccccccCCCCCCCCCCC
Q 020098 193 KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTG 272 (331)
Q Consensus 193 ~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~ 272 (331)
++||+|||+.+.++++++.+ ..+|+++|++||++++..+. +++++|+++||++++|+||++|.|++++....++..
T Consensus 143 r~iGvS~~~~~~l~~~~~~~---~~~~~~~q~~~n~~~~~~~~-~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~~~ 218 (285)
T cd06660 143 RAIGVSNFSAEQLEEALAAA---GVPPAVNQVEYNLLDRQAEE-ELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPPE 218 (285)
T ss_pred cEEEeeCCCHHHHHHHHHhh---CCCceEEecccCcccCchHH-HHHHHHHHcCcEEEEeccccCceecCCCCCCCCCCh
Confidence 99999999999999886654 36899999999999998764 499999999999999999999999876553322110
Q ss_pred CCCCccchhHHhhHHHHHHHHHHHHHhcCCCHHHHHHHhhhh-------cccccchHHHHHhhcc
Q 020098 273 PRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQNSPCMSNS-------LAKQILFQQLEKCLTI 330 (331)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~qval~~~l~-------~~g~~~~~~l~enl~~ 330 (331)
. .....+..++++++++++|+|++|+++ ++|+++++||++|+++
T Consensus 219 --------~------~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~ 269 (285)
T cd06660 219 --------G------DLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAA 269 (285)
T ss_pred --------h------hHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhh
Confidence 0 134589999999999999999999874 6889999999999976
No 9
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=5.5e-51 Score=369.71 Aligned_cols=238 Identities=26% Similarity=0.410 Sum_probs=211.2
Q ss_pred eeecCCCCcccccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHH
Q 020098 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (331)
Q Consensus 38 ~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l 117 (331)
+.+|.+ |.+||.||||||+. ++++..+.+..|++.|+||||||..|+| |+.+|++|
T Consensus 6 ~~~Ln~-G~~mP~iGlGTw~~--------------~~~~~~~aV~~Al~~GYRHIDtA~~Y~N---------E~evG~ai 61 (300)
T KOG1577|consen 6 TVKLNN-GFKMPIIGLGTWQS--------------PPGQVAEAVKAAIKAGYRHIDTAHVYGN---------EKEVGEAI 61 (300)
T ss_pred eEeccC-CCccceeeeEeccc--------------ChhhHHHHHHHHHHhCcceeechhhhCC---------hHHHHHHH
Confidence 678887 99999999999982 2488999999999999999999999999 99999999
Q ss_pred HhccCC--CCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCC-----------------ChHH
Q 020098 118 KERKQR--DPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-----------------GNEG 178 (331)
Q Consensus 118 ~~~~~~--~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~-----------------~~~~ 178 (331)
+....+ .+|+++||+||+|. ..+.++.++.++++||++||+||+|+|+||||-.. +..+
T Consensus 62 k~~i~~~~v~RediFiTSKlw~--~~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~ 139 (300)
T KOG1577|consen 62 KELLAEGGVKREDIFITSKLWP--TDHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIE 139 (300)
T ss_pred HHHhhhCCcchhhheeeeccCc--cccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHH
Confidence 976422 36999999999986 45789999999999999999999999999998763 2457
Q ss_pred HHHHHHHHHHcCceeEEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHHHHHcCCeEEEcccCccc
Q 020098 179 FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (331)
Q Consensus 179 ~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G 258 (331)
+|++||++++.|++|+||||||+..+++++++.+ .++|.++|+++|++.++.. ++++|+++||.|.|||||+++
T Consensus 140 tW~amE~~~~~Gl~rsIGVSNF~~~~le~ll~~~---ki~P~vnQvE~HP~~~Q~~---L~~fCk~~~I~v~AYSpLg~~ 213 (300)
T KOG1577|consen 140 TWKAMEKLVDEGLVRSIGVSNFNIKQLEELLNLA---KIKPAVNQVECHPYLQQKK---LVEFCKSKGIVVTAYSPLGSP 213 (300)
T ss_pred HHHHHHHHHHcCCceEeeeecCCHHHHHHHHhcC---CCCCccceeeccCCcChHH---HHHHHhhCCcEEEEecCCCCC
Confidence 9999999999999999999999999999998775 4899999999999998875 999999999999999999986
Q ss_pred cccCCCCCCCCCCCCCCCccchhHHhhHHHHHHHHHHHHHhcCCCHHHHHHHhhh-----hcccccchHHHHHhhcc
Q 020098 259 ALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQNSPCMSN-----SLAKQILFQQLEKCLTI 330 (331)
Q Consensus 259 ~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~qval~~~l-----~~~g~~~~~~l~enl~~ 330 (331)
-- +. .++.++ .+.++|+|||+|++||+|||.+ ++|.+++++|++||+++
T Consensus 214 ~~-----------~~--~ll~~~----------~l~~iA~K~~kt~aQIlLrw~~q~g~~vipKS~~~~Ri~eN~~v 267 (300)
T KOG1577|consen 214 GR-----------GS--DLLEDP----------VLKEIAKKYNKTPAQILLRWALQRGVSVIPKSSNPERIKENFKV 267 (300)
T ss_pred CC-----------cc--ccccCH----------HHHHHHHHhCCCHHHHHHHHHHhCCcEEEeccCCHHHHHHHHhh
Confidence 31 00 234443 8999999999999999999976 57999999999999975
No 10
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=2.8e-49 Score=367.46 Aligned_cols=248 Identities=19% Similarity=0.261 Sum_probs=208.3
Q ss_pred ccceeeecCCCCcccccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHH
Q 020098 34 TAEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLL 113 (331)
Q Consensus 34 ~~m~~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~i 113 (331)
+.|...++.-+|++||+||||||++|+...|+. ..+++++.++|+.|++.|||+||||+.||+|.+ |+.+
T Consensus 3 ~~~~~~~~~l~g~~vs~iglG~~~lg~~~~~g~----~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~s------E~~l 72 (290)
T PRK10376 3 TIMSSGTFTLGGRSVNRLGYGAMQLAGPGVFGP----PKDRDAAIAVLREAVALGVNHIDTSDFYGPHVT------NQLI 72 (290)
T ss_pred ccccCCceecCCeeecccceeccccCCCCcCCC----CCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcH------HHHH
Confidence 345444333348999999999999987533432 235688999999999999999999999999877 9999
Q ss_pred HHHHHhccCCCCCCcEEEEecCCCC-------CCCCCHHHHHHHHHHHHHhhCCCcccEEEeccC------CCCChHHHH
Q 020098 114 GRFIKERKQRDPEVEVTVATKFAAL-------PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWA------GIWGNEGFI 180 (331)
Q Consensus 114 G~~l~~~~~~~~R~~~~i~tK~~~~-------~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p------~~~~~~~~~ 180 (331)
|++++.. |+++||+||++.. ....+++.+++++++||++||+||||+|++|++ +..+.+++|
T Consensus 73 g~~l~~~-----R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~ 147 (290)
T PRK10376 73 REALHPY-----PDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPL 147 (290)
T ss_pred HHHHhcC-----CCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHH
Confidence 9999642 7999999998641 235679999999999999999999999998874 223468899
Q ss_pred HHHHHHHHcCceeEEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHHHHHcCCeEEEcccCccccc
Q 020098 181 DGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGAL 260 (331)
Q Consensus 181 ~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~L 260 (331)
++|++|+++||||+||+|||+.++++++.+. .+++++|++||++++..+ +++++|+++||++++|+||+++..
T Consensus 148 ~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~-----~~~~~~q~~~~~~~~~~~--~~~~~~~~~gi~v~a~~pL~g~~~ 220 (290)
T PRK10376 148 TVLAELQRQGLVRHIGLSNVTPTQVAEARKI-----AEIVCVQNHYNLAHRADD--ALIDALARDGIAYVPFFPLGGFTP 220 (290)
T ss_pred HHHHHHHHCCceeEEEecCCCHHHHHHHHhh-----CCeEEEecccCCCcCChH--HHHHHHHHcCCEEEEeecCCCCCh
Confidence 9999999999999999999999999888665 578999999999998644 599999999999999999974310
Q ss_pred cCCCCCCCCCCCCCCCccchhHHhhHHHHHHHHHHHHHhcCCCHHHHHHHhhhh-------cccccchHHHHHhhcc
Q 020098 261 TGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQNSPCMSNS-------LAKQILFQQLEKCLTI 330 (331)
Q Consensus 261 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~qval~~~l~-------~~g~~~~~~l~enl~~ 330 (331)
+. .+.+.++|+++|+|++|+||+|+++ ++|+++++||++|+++
T Consensus 221 -----------------~~----------~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a 270 (290)
T PRK10376 221 -----------------LQ----------SSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAA 270 (290)
T ss_pred -----------------hh----------hHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhh
Confidence 11 1379999999999999999999883 6899999999999976
No 11
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=1.7e-49 Score=367.13 Aligned_cols=254 Identities=33% Similarity=0.522 Sum_probs=209.8
Q ss_pred cceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcE
Q 020098 50 KLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEV 129 (331)
Q Consensus 50 ~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~ 129 (331)
+||||||++++. ..+++++.++|+.|++.|||+||||+.||+|.+ |+.+|++|+..+. +|+++
T Consensus 1 ~l~lG~~~~~~~---------~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~s------E~~lg~~l~~~~~--~r~~~ 63 (283)
T PF00248_consen 1 PLGLGTWRLGGE---------RVSEEEAEAILRRALEAGINFFDTADSYGNGRS------ERILGRALRKSRV--PRDDI 63 (283)
T ss_dssp SBEEECTTBTTT---------TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTH------HHHHHHHHHHTSS--TGGGS
T ss_pred CEEEEccccCCC---------CCCHHHHHHHHHHHHHcCCCeeccccccccccc------ccccccccccccc--ccccc
Confidence 589999998773 477899999999999999999999999999887 9999999999332 38999
Q ss_pred EEEecCC---CCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCC-CC-hHHHHHHHHHHHHcCceeEEEeecCcHHH
Q 020098 130 TVATKFA---ALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WG-NEGFIDGLGDAVEQGLVKAVGVSNYSEKR 204 (331)
Q Consensus 130 ~i~tK~~---~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~-~~-~~~~~~~L~~l~~~G~i~~iGvs~~~~~~ 204 (331)
+|+||+. .....++++.+++++++||++||+||||+|++|+|+. .. .+++|++|++|+++|+|++||||||+++.
T Consensus 64 ~i~tK~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~ 143 (283)
T PF00248_consen 64 FISTKVYGDGKPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQ 143 (283)
T ss_dssp EEEEEEESSSSTGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHH
T ss_pred cccccccccccccccccccccccccccccccccccchhccccccccccccccchhhhhhhhccccccccccccccccccc
Confidence 9999991 1235789999999999999999999999999999997 45 89999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeeeeeecccccccCccccchhHHHHHcCCeEEEcccCccccccCCCCCCCCCCCCCCCccchhHHh
Q 020098 205 LRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLR 284 (331)
Q Consensus 205 l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~ 284 (331)
++++ .....++|+++|++||++++.... +++++|+++||++++|+|+++|+|++++....++........
T Consensus 144 l~~~---~~~~~~~~~~~q~~~n~~~~~~~~-~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~~~~------ 213 (283)
T PF00248_consen 144 LEAA---LKIGSIPPDVVQINYNLLNRREEE-GLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRASLRD------ 213 (283)
T ss_dssp HHHH---HTCTSS-ESEEEEE-BTTBHBGGH-HHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSGSST------
T ss_pred cccc---cccccccccccccccccccccccc-cccccccccccccccccccccCccccccccCCCcccccccch------
Confidence 8888 333447899999999999555444 699999999999999999999999998876554332211100
Q ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHhhh-------hcccccchHHHHHhhccC
Q 020098 285 NLQPLLNRIKELGENYSKTSTQNSPCMSN-------SLAKQILFQQLEKCLTIC 331 (331)
Q Consensus 285 ~~~~~~~~l~~la~~~g~s~~qval~~~l-------~~~g~~~~~~l~enl~~~ 331 (331)
..+..+.+.++++++|+|++|+||+|++ +++|+++++||+||++++
T Consensus 214 -~~~~~~~l~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~ 266 (283)
T PF00248_consen 214 -AQELADALRELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAAL 266 (283)
T ss_dssp -HGGGHHHHHHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGS
T ss_pred -hhhhhhhhhhhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHh
Confidence 3344568999999999999999999988 469999999999999863
No 12
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=3.1e-49 Score=363.01 Aligned_cols=225 Identities=25% Similarity=0.391 Sum_probs=198.2
Q ss_pred cccccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCC
Q 020098 46 LKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDP 125 (331)
Q Consensus 46 ~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~ 125 (331)
.+||.||||||+++. +++.+++++|++.|||+||||+.||+ |+.+|++|+..+. +
T Consensus 1 ~~vs~lglGt~~~~~--------------~~~~~~i~~A~~~Gi~~~DTA~~Yg~---------E~~lG~al~~~~~--~ 55 (267)
T PRK11172 1 MSIPAFGLGTFRLKD--------------QVVIDSVKTALELGYRAIDTAQIYDN---------EAAVGQAIAESGV--P 55 (267)
T ss_pred CCCCCEeeEccccCh--------------HHHHHHHHHHHHcCCCEEEccchhCC---------HHHHHHHHHHcCC--C
Confidence 369999999997643 67899999999999999999999996 9999999986432 3
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCC---CChHHHHHHHHHHHHcCceeEEEeecCcH
Q 020098 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNYSE 202 (331)
Q Consensus 126 R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~---~~~~~~~~~L~~l~~~G~i~~iGvs~~~~ 202 (331)
|+++||+||++. ...+++.+++++++||++||+||||+|++|||++ .+.+++|++|++|+++||||+||||||+.
T Consensus 56 R~~v~i~TK~~~--~~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~ 133 (267)
T PRK11172 56 RDELFITTKIWI--DNLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTI 133 (267)
T ss_pred hhHeEEEEEeCC--CCCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCH
Confidence 899999999864 3578999999999999999999999999999975 35689999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-CeeeeeecccccccCccccchhHHHHHcCCeEEEcccCccccccCCCCCCCCCCCCCCCccchh
Q 020098 203 KRLRNAYEKLKKRGI-PLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAE 281 (331)
Q Consensus 203 ~~l~~~~~~~~~~~~-~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~ 281 (331)
++++++++. .+. +++++|++||++++.. +++++|+++||++++|+||++|.+.. .
T Consensus 134 ~~l~~~~~~---~~~~~~~~~Q~~~~~~~~~~---~ll~~~~~~gi~v~a~spl~~G~~~~-----------------~- 189 (267)
T PRK11172 134 ALMKQAIAA---VGAENIATNQIELSPYLQNR---KVVAFAKEHGIHVTSYMTLAYGKVLK-----------------D- 189 (267)
T ss_pred HHHHHHHHh---cCCCCCeEEeeecCCCCCcH---HHHHHHHHCCCEEEEECCCCCCcccC-----------------C-
Confidence 999998654 233 6899999999999853 59999999999999999999986521 1
Q ss_pred HHhhHHHHHHHHHHHHHhcCCCHHHHHHHhhh-----hcccccchHHHHHhhcc
Q 020098 282 YLRNLQPLLNRIKELGENYSKTSTQNSPCMSN-----SLAKQILFQQLEKCLTI 330 (331)
Q Consensus 282 ~~~~~~~~~~~l~~la~~~g~s~~qval~~~l-----~~~g~~~~~~l~enl~~ 330 (331)
+.+.++|+++|+|++|+||+|++ +++|+++++||++|+++
T Consensus 190 ---------~~l~~~a~~~~~s~aqval~w~l~~~~~~i~g~~~~~~l~~n~~~ 234 (267)
T PRK11172 190 ---------PVIARIAAKHNATPAQVILAWAMQLGYSVIPSSTKRENLASNLLA 234 (267)
T ss_pred ---------HHHHHHHHHhCCCHHHHHHHHHHhCCCEeecCCCCHHHHHHHHhh
Confidence 16899999999999999999987 47899999999999875
No 13
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=1.9e-49 Score=368.46 Aligned_cols=253 Identities=19% Similarity=0.200 Sum_probs=207.5
Q ss_pred CcccccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCC
Q 020098 45 DLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRD 124 (331)
Q Consensus 45 g~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~ 124 (331)
+++||+||||||+||....|....++.++++++.++|++|++.||||||||+.||. ||+.+|++|++..
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~--------SE~~lG~al~~~~--- 70 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGR--------AETVLGQLIPRPV--- 70 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhh--------HHHHHhhhhccCC---
Confidence 67899999999999863111112234578899999999999999999999999975 4999999997521
Q ss_pred CCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCC--CCh-HHHHHHHHHHHHcCceeEEEeecCc
Q 020098 125 PEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGN-EGFIDGLGDAVEQGLVKAVGVSNYS 201 (331)
Q Consensus 125 ~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~--~~~-~~~~~~L~~l~~~G~i~~iGvs~~~ 201 (331)
+++++|+||. ...+++.+++++++||++||+||||+|++|+|+. .+. +++|++|++|+++||||+||+|||+
T Consensus 71 -~~~~~i~tk~----~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~ 145 (292)
T PRK14863 71 -PFRVTLSTVR----ADRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHA 145 (292)
T ss_pred -ceEeeccccc----ccccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccC
Confidence 4679999986 3467899999999999999999999999999976 233 6789999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHHHHHcCCeEEEcccCccccccCCCCCCCCCCCCCCCccchh
Q 020098 202 EKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAE 281 (331)
Q Consensus 202 ~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~ 281 (331)
++++.++.+. .+|+++|++||+++++.+..+++++|+++||++++|+||++|+|++.... .+ .
T Consensus 146 ~~~~~~~~~~-----~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~~--~~-----~----- 208 (292)
T PRK14863 146 SDDPVGVARR-----FKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPDR--VP-----A----- 208 (292)
T ss_pred HHHHHHHHhc-----CCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCccc--Cc-----c-----
Confidence 9888777432 68999999999999976533699999999999999999999999753110 01 0
Q ss_pred HHhhHHHHHHHHHHHHHhcCCCHHHHHHHhhhh-------cccccchHHHHHhhcc
Q 020098 282 YLRNLQPLLNRIKELGENYSKTSTQNSPCMSNS-------LAKQILFQQLEKCLTI 330 (331)
Q Consensus 282 ~~~~~~~~~~~l~~la~~~g~s~~qval~~~l~-------~~g~~~~~~l~enl~~ 330 (331)
........+..+.+++.++++|++|+||+|+++ ++|+++++||++|++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a 264 (292)
T PRK14863 209 QLKGASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAA 264 (292)
T ss_pred chhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHH
Confidence 111223445678888999999999999999884 6799999999999875
No 14
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=6.3e-49 Score=342.55 Aligned_cols=255 Identities=20% Similarity=0.376 Sum_probs=229.7
Q ss_pred ceeeecCCCCcccccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHH
Q 020098 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR 115 (331)
Q Consensus 36 m~~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~ 115 (331)
|++.+|+..|+++|++.+|+|++.+ |+ ++..+...+|+.+++.|||+||-|+.||++++ |+++|+
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d---~~------~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~c------E~~fg~ 65 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND---WN------MSARELLSFIETALELGITTFDHADIYGGYQC------EALFGE 65 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh---cc------CCHHHHHHHHHHHHHcCcccchhhhhcCCccH------HHHHHH
Confidence 7889999889999999999999877 33 34578899999999999999999999999998 999999
Q ss_pred HHHhccCCCCCCcEEEEecCCCC----------CCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCC-CChHHHHHHHH
Q 020098 116 FIKERKQRDPEVEVTVATKFAAL----------PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLG 184 (331)
Q Consensus 116 ~l~~~~~~~~R~~~~i~tK~~~~----------~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~-~~~~~~~~~L~ 184 (331)
+|+..|.- |+++.|.||||.. +++.+.++|..|+|+||++|+|||+|+++||+||+ .+.+|+-+++.
T Consensus 66 aL~l~p~l--RekieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~ 143 (298)
T COG4989 66 ALKLAPGL--REKIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFT 143 (298)
T ss_pred HHhcChhh--hhheEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHH
Confidence 99998865 8999999999962 46789999999999999999999999999999999 77999999999
Q ss_pred HHHHcCceeEEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHHHHHcCCeEEEcccCccccccCCC
Q 020098 185 DAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKY 264 (331)
Q Consensus 185 ~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~L~~~~ 264 (331)
.|+++||||++|||||++.+++.+.+... .+..+||+++++++.....++.+++|+++.|..++||||++|.+
T Consensus 144 ~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~---~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~---- 216 (298)
T COG4989 144 HLHKSGKVRHFGVSNFNPAQFELLQSRLP---FTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGL---- 216 (298)
T ss_pred HHHhcCCeeeeecCCCCHHHHHHHHHhcc---chhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCcc----
Confidence 99999999999999999999999977643 56889999999999998888999999999999999999999954
Q ss_pred CCCCCCCCCCCCccchhHHhhHHHHHHHHHHHHHhcC-CCHHHHHHHhhh-------hcccccchHHHHHhhc
Q 020098 265 TPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYS-KTSTQNSPCMSN-------SLAKQILFQQLEKCLT 329 (331)
Q Consensus 265 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g-~s~~qval~~~l-------~~~g~~~~~~l~enl~ 329 (331)
|.. .++.+++..++..+|+++| .|.++|+++|++ +++|+.++++|++.++
T Consensus 217 -------------F~g--~~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~ 274 (298)
T COG4989 217 -------------FLG--DDKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIK 274 (298)
T ss_pred -------------ccC--CcchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHH
Confidence 332 2445666779999999999 799999999987 6799999999998765
No 15
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=1.5e-47 Score=353.22 Aligned_cols=233 Identities=24% Similarity=0.378 Sum_probs=201.7
Q ss_pred eeecCCCCcccccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHH
Q 020098 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (331)
Q Consensus 38 ~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l 117 (331)
+..|. +|+.||+||||||+++ ++++.++|++|++.|+||||||+.||+ |+.+|++|
T Consensus 6 ~~~l~-~g~~v~~lglG~~~~~--------------~~~~~~~l~~A~~~Gi~~~DTA~~Yg~---------E~~lG~al 61 (275)
T PRK11565 6 VIKLQ-DGNVMPQLGLGVWQAS--------------NEEVITAIHKALEVGYRSIDTAAIYKN---------EEGVGKAL 61 (275)
T ss_pred eEEcC-CCCccCCcceECccCC--------------HHHHHHHHHHHHHhCCCEEEchhhhCC---------HHHHHHHH
Confidence 35574 6999999999999753 378999999999999999999999996 99999999
Q ss_pred HhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCC--ChHHHHHHHHHHHHcCceeEE
Q 020098 118 KERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW--GNEGFIDGLGDAVEQGLVKAV 195 (331)
Q Consensus 118 ~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~--~~~~~~~~L~~l~~~G~i~~i 195 (331)
+..+. +|++++|+||++ ..+++.+++++++||++||+||||+|++|+|+.. ...++|++|++|+++|+|++|
T Consensus 62 ~~~~~--~R~~~~i~tK~~----~~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~i 135 (275)
T PRK11565 62 KEASV--AREELFITTKLW----NDDHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSI 135 (275)
T ss_pred HHcCC--CHHHEEEEEEec----CcchHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEE
Confidence 97542 389999999985 3467899999999999999999999999999762 467999999999999999999
Q ss_pred EeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHHHHHcCCeEEEcccCccccccCCCCCCCCCCCCCC
Q 020098 196 GVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRG 275 (331)
Q Consensus 196 Gvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~ 275 (331)
|+|||++++++++.+ ..++++.++|++||++.+.. +++++|+++||.+++|+|+++|.-
T Consensus 136 GvSn~~~~~l~~~~~---~~~v~~~~~Q~~~~~~~~~~---~~~~~~~~~~i~~~a~spl~~G~~--------------- 194 (275)
T PRK11565 136 GVCNFQIHHLQRLID---ETGVTPVINQIELHPLMQQR---QLHAWNATHKIQTESWSPLAQGGK--------------- 194 (275)
T ss_pred eeccCCHHHHHHHHH---hCCCCceeeeeecCCccchH---HHHHHHHHCCCEEEEEccCCCCCc---------------
Confidence 999999999998853 34467899999999999764 499999999999999999997731
Q ss_pred CccchhHHhhHHHHHHHHHHHHHhcCCCHHHHHHHhhh-----hcccccchHHHHHhhccC
Q 020098 276 RIYTAEYLRNLQPLLNRIKELGENYSKTSTQNSPCMSN-----SLAKQILFQQLEKCLTIC 331 (331)
Q Consensus 276 ~~~~~~~~~~~~~~~~~l~~la~~~g~s~~qval~~~l-----~~~g~~~~~~l~enl~~~ 331 (331)
..+.. +.|.++|++||+|++|+||+|++ ++||+++++|+++|++++
T Consensus 195 ~~~~~----------~~l~~ia~~~g~s~aq~aL~w~l~~~~~~I~g~~~~~~i~~n~~a~ 245 (275)
T PRK11565 195 GVFDQ----------KVIRDLADKYGKTPAQIVIRWHLDSGLVVIPKSVTPSRIAENFDVF 245 (275)
T ss_pred ccccC----------HHHHHHHHHhCCCHHHHHHHHHHcCCCEeeCCCCCHHHHHHHHhcc
Confidence 01111 27999999999999999999987 479999999999999763
No 16
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=3.4e-44 Score=315.07 Aligned_cols=263 Identities=22% Similarity=0.260 Sum_probs=226.6
Q ss_pred cceeeecCCCCcccccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHH
Q 020098 35 AEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLG 114 (331)
Q Consensus 35 ~m~~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG 114 (331)
.|+||.+|.||++||+|+||+..++.. +++.++++....+..|+..|||+|||++.||.+++ |+.+|
T Consensus 21 rmeyR~lg~tgl~VSk~~fGga~L~~~-------fgd~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~s------e~~lg 87 (342)
T KOG1576|consen 21 RMEYRQLGSTGLRVSKLGFGGAALGQL-------FGDEDEEEGILTVIEAFKSGINYIDTSPYYGQSRS------EEGLG 87 (342)
T ss_pred HHHHhhcCCCcceeeeeeecchhhhhh-------cCCcchhhhHHHHHHHHHccccceecCcccCcchh------HHHHH
Confidence 799999999999999999999998887 55677788888888899999999999999999998 99999
Q ss_pred HHHHhccCCCCCCcEEEEecCCCC------CCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCC-----hHHHHHHH
Q 020098 115 RFIKERKQRDPEVEVTVATKFAAL------PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGL 183 (331)
Q Consensus 115 ~~l~~~~~~~~R~~~~i~tK~~~~------~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~-----~~~~~~~L 183 (331)
.++++.| |+.+||+||+|.. .++++++.+++++++||+||++||+|++++|..+..+ ..|++.+|
T Consensus 88 ~al~~vP----R~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~L 163 (342)
T KOG1576|consen 88 LALKDVP----REAYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPAL 163 (342)
T ss_pred HHHhhCC----hhheeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHH
Confidence 9999998 9999999999973 2688999999999999999999999999999988743 56899999
Q ss_pred HHHHHcCceeEEEeecCcHHHHHHHHHHHHhcCCCeeeee--ecccccccCccccchhHHHHHcCCeEEEcccCcccccc
Q 020098 184 GDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQ--VNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALT 261 (331)
Q Consensus 184 ~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q--~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~L~ 261 (331)
+++|++||||+||++.+..+.+.++.+ ......+++- .+|++.+..-. ..+++.+.+|++|+..++++.|+|+
T Consensus 164 e~lk~~Gk~RfiGitgypldvl~~~ae---~~~G~~dvvlsY~ry~l~d~tLl--~~~~~~~sk~vgVi~AsalsmgLLt 238 (342)
T KOG1576|consen 164 EELKQEGKIRFIGITGYPLDVLTECAE---RGKGRLDVVLSYCRYTLNDNTLL--RYLKRLKSKGVGVINASALSMGLLT 238 (342)
T ss_pred HHHHhcCceeEeeecccchHHHHHHHh---cCCCceeeehhhhhhccccHHHH--HHHHHHHhcCceEEehhhHHHHHhh
Confidence 999999999999999999999988853 3333455544 67777666544 4788889999999999999999999
Q ss_pred CCCCCCCCCCCCCCCccchhHHhhHHHHHHHHHHHHHhcCCCHHHHHHHhhhh-------cccccchHHHHHhhcc
Q 020098 262 GKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQNSPCMSNS-------LAKQILFQQLEKCLTI 330 (331)
Q Consensus 262 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~qval~~~l~-------~~g~~~~~~l~enl~~ 330 (331)
.+-.++++|..+. ..+...+-.+.|++.|+.++.+|+.|.++ ++|++++++|+.|++.
T Consensus 239 ~~gp~~wHPaS~E-----------lk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLda 303 (342)
T KOG1576|consen 239 NQGPPPWHPASDE-----------LKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDA 303 (342)
T ss_pred cCCCCCCCCCCHH-----------HHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHh
Confidence 9888877775532 33444467788999999999999999875 4678899999999864
No 17
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=4.5e-42 Score=314.91 Aligned_cols=248 Identities=22% Similarity=0.263 Sum_probs=215.6
Q ss_pred ceeeecCCCCcccccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHH
Q 020098 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR 115 (331)
Q Consensus 36 m~~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~ 115 (331)
|.||++|++|.++|.||||||++... |. +.++.+.+.++|+.|++.|||+||||..|-.|.| |..+|+
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~--~~----~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~s------E~~lgk 68 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLK--EQ----GSIDEENANETIDYAIEHGINYIDTAWPYHGGES------EEFLGK 68 (391)
T ss_pred CchhhcCCCCcccceeccceeecccc--cC----CCccHHHHHHHHHHHHHcCCceEeecccccCCCc------hHHHHH
Confidence 88999999999999999999998775 33 5678899999999999999999999999977766 999999
Q ss_pred HHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCC-----hHHHHHHHHHHHHcC
Q 020098 116 FIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLGDAVEQG 190 (331)
Q Consensus 116 ~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~-----~~~~~~~L~~l~~~G 190 (331)
+|+... |++++|+||+... .-.+++.+++-++++|++||+||+|+|+||..+... ..+.++.+++++++|
T Consensus 69 aL~~~~----Rekv~LaTKlp~~-~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~~~k~~~~g~~df~~kak~eG 143 (391)
T COG1453 69 ALKDGY----REKVKLATKLPSW-PVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTETWEKIERLGVFDFLEKAKAEG 143 (391)
T ss_pred Hhhhcc----cceEEEEeecCCc-cccCHHHHHHHHHHHHHHhCCchhhhhhhccccHHHHHHHHccChHHHHHHHHhcC
Confidence 999987 9999999999642 235789999999999999999999999999977511 234799999999999
Q ss_pred ceeEEEeecC-cHHHHHHHHHHHHhcCCCeeeeeecccccccCccc-cchhHHHHHcCCeEEEcccCccccccCCCCCCC
Q 020098 191 LVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-NGVKAACDELGITLIAYCPIAQGALTGKYTPQN 268 (331)
Q Consensus 191 ~i~~iGvs~~-~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~-~~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~~~ 268 (331)
|||++|+|.| +.+.+.+++.. .+++++|++||.++..... .+.+++|.++|++|+.++|+.+|-|...
T Consensus 144 kIr~~GFSfHgs~e~~~~iv~a-----~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~----- 213 (391)
T COG1453 144 KIRNAGFSFHGSTEVFKEIVDA-----YPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYN----- 213 (391)
T ss_pred cEEEeeecCCCCHHHHHHHHhc-----CCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccC-----
Confidence 9999999999 56888888766 7899999999999986541 2589999999999999999999977531
Q ss_pred CCCCCCCCccchhHHhhHHHHHHHHHHHHHhcC--CCHHHHHHHhhhh-------cccccchHHHHHhhcc
Q 020098 269 PPTGPRGRIYTAEYLRNLQPLLNRIKELGENYS--KTSTQNSPCMSNS-------LAKQILFQQLEKCLTI 330 (331)
Q Consensus 269 ~p~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g--~s~~qval~~~l~-------~~g~~~~~~l~enl~~ 330 (331)
-|. +++++++++. .||+..|+||+++ ++|+++++||+||+++
T Consensus 214 ----------vP~----------~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~ 264 (391)
T COG1453 214 ----------VPE----------KLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKI 264 (391)
T ss_pred ----------CCH----------HHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHH
Confidence 122 8999999995 6899999999885 4788999999999976
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.27 E-value=1.8e-06 Score=76.00 Aligned_cols=74 Identities=23% Similarity=0.307 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHcCceeEEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHHHHHcCCeEEEccc
Q 020098 176 NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (331)
Q Consensus 176 ~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~ 254 (331)
..++|+.||+++.+|+|..||+|.|+..+++++++.++ ++|.++|++..-.+.-+. ++.+||..++|+++.++-
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saq---VvP~snqVnL~~cCvvPp--dLqafa~~hdiQLltHsD 228 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQ---VVPESNQVNLGQCCVVPP--DLQAFADRHDIQLLTHSD 228 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhc---cccccceeeccccccCCH--HHHHHhhhcceeeeecCC
Confidence 35789999999999999999999999999999987765 899999999998888766 599999999999998763
No 19
>PRK08392 hypothetical protein; Provisional
Probab=89.42 E-value=14 Score=32.48 Aligned_cols=187 Identities=16% Similarity=0.207 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 020098 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (331)
Q Consensus 75 ~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~s 154 (331)
....+.++.|.+.|++.|=.+++...... ..=+..+.+ ++...+. .+-++++..-++..+ ... ...++.
T Consensus 14 ~~~~e~v~~A~~~Gl~~i~iTdH~~~~~~---~~~~~y~~~-i~~l~~~-~~i~il~GiE~~~~~--~~~----~~~~~~ 82 (215)
T PRK08392 14 GSVRDNIAEAERKGLRLVGISDHIHYFTP---SKFNAYINE-IRQWGEE-SEIVVLAGIEANITP--NGV----DITDDF 82 (215)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCCccch---hhHHHHHHH-HHHHhhc-cCceEEEeEEeeecC--Ccc----hhHHHH
Confidence 34668899999999999877766432100 000122222 2222211 012333333332211 111 233334
Q ss_pred HHhhCCCcccEEEec-cCCCCChHHHHHHHHHHHHcCceeEEEeec-------C-cHHHHHHHHHHHHhcCCCeeeeeec
Q 020098 155 LFRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVSN-------Y-SEKRLRNAYEKLKKRGIPLASNQVN 225 (331)
Q Consensus 155 L~~Lg~d~iDl~~lh-~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~-------~-~~~~l~~~~~~~~~~~~~~~~~q~~ 225 (331)
++ ..||+ +..+| +++....+...+.+.++.+.+.+.-+|=-. + ..+.++++++.+.+.+..+.+|- .
T Consensus 83 ~~--~~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiNt-~ 158 (215)
T PRK08392 83 AK--KLDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEISS-R 158 (215)
T ss_pred Hh--hCCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEeC-C
Confidence 44 34555 66778 443333457778888888898876565321 1 12567778887887776666653 1
Q ss_pred ccccccCccccchhHHHHHcCCeEEEcccCccccccCCCCCCCCCCCCCCCccchhHHhhHHHHHHHHHHHHHhcCCCHH
Q 020098 226 YSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTST 305 (331)
Q Consensus 226 ~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~ 305 (331)
+. .+.. .+++.|++.|+.++. +.-+.. +..... .+...+++++.|.++.
T Consensus 159 ~~----~p~~-~~l~~~~~~G~~~~i-gSDAH~---------------------~~~vg~----~~~a~~~~~~~g~~~~ 207 (215)
T PRK08392 159 YR----VPDL-EFIRECIKRGIKLTF-ASDAHR---------------------PEDVGN----VSWSLKVFKKAGGKKE 207 (215)
T ss_pred CC----CCCH-HHHHHHHHcCCEEEE-eCCCCC---------------------hHHCCc----HHHHHHHHHHcCCCHH
Confidence 21 1222 489999999987543 333321 000001 1256778888888877
Q ss_pred HH
Q 020098 306 QN 307 (331)
Q Consensus 306 qv 307 (331)
++
T Consensus 208 ~~ 209 (215)
T PRK08392 208 DL 209 (215)
T ss_pred He
Confidence 65
No 20
>PRK13796 GTPase YqeH; Provisional
Probab=89.41 E-value=8 Score=37.18 Aligned_cols=140 Identities=19% Similarity=0.184 Sum_probs=93.2
Q ss_pred ccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCC---CCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCC
Q 020098 49 TKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNG---ITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDP 125 (331)
Q Consensus 49 s~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~G---vn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~ 125 (331)
..+|--|.++-. ++.......++++..+++...-+.- +-.+|..+.-+.- ...+.+.+. +
T Consensus 34 ~~~C~RC~~l~h---y~~~~~~~~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s~--------~~~L~~~~~------~ 96 (365)
T PRK13796 34 EVYCQRCFRLKH---YNEIQDVSLTDDDFLKLLNGIGDSDALVVNVVDIFDFNGSW--------IPGLHRFVG------N 96 (365)
T ss_pred CeEchhhhhhhc---cCcccCCCCCHHHHHHHHHhhcccCcEEEEEEECccCCCch--------hHHHHHHhC------C
Confidence 456777776644 3333334456677777777776555 4567765533321 223333332 1
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecCcHHHH
Q 020098 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (331)
Q Consensus 126 R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l 205 (331)
+.-++|.+|....+.....+.+.+.++...+.+|....|++++........+++++.+.++.+.+.+-.||.+|..-..+
T Consensus 97 kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTL 176 (365)
T PRK13796 97 NPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKYREGRDVYVVGVTNVGKSTL 176 (365)
T ss_pred CCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHH
Confidence 46788999986544344566777777777788887656888887766678899999998888788899999999864443
No 21
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=88.95 E-value=7.1 Score=36.52 Aligned_cols=157 Identities=13% Similarity=0.098 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 020098 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (331)
Q Consensus 73 ~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~ 152 (331)
+.++..+.++.+++.|++.|+.-- |.. . +.+.-.=++++... . ++-|.-+.. ...+.+.. ..+-
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~--g~~-~----~~d~~~v~~lr~~~----g-~~~l~vD~n---~~~~~~~A-~~~~ 197 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL--GGD-L----EDDIERIRAIREAA----P-DARLRVDAN---QGWTPEEA-VELL 197 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe--CCC-h----hhHHHHHHHHHHhC----C-CCeEEEeCC---CCcCHHHH-HHHH
Confidence 346677788888899999998642 211 0 00222223333322 2 455666662 23444332 2333
Q ss_pred HHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCcee-EEEeecCcHHHHHHHHHHHHhcCCCeeeeeeccccccc
Q 020098 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 231 (331)
Q Consensus 153 ~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~-~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~ 231 (331)
+.|+.+++ .++..|-. .+-++.+.+|++...|. ..|=+-++.+.+.++++. ...+++|+....+-.
T Consensus 198 ~~l~~~~l-----~~iEeP~~---~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~-----~~~d~v~~~~~~~GG 264 (316)
T cd03319 198 RELAELGV-----ELIEQPVP---AGDDDGLAYLRDKSPLPIMADESCFSAADAARLAGG-----GAYDGINIKLMKTGG 264 (316)
T ss_pred HHHHhcCC-----CEEECCCC---CCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhc-----CCCCEEEEeccccCC
Confidence 44444444 44444432 22367788888887775 345555688888888654 457777777555322
Q ss_pred CccccchhHHHHHcCCeEEEcccCccc
Q 020098 232 KPEENGVKAACDELGITLIAYCPIAQG 258 (331)
Q Consensus 232 ~~~~~~~l~~~~~~gi~v~a~s~l~~G 258 (331)
-..-..+..+|+++||.++.++-+..+
T Consensus 265 i~~~~~~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 265 LTEALRIADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred HHHHHHHHHHHHHcCCCEEEECchhhH
Confidence 111124899999999999998666554
No 22
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=88.87 E-value=23 Score=34.17 Aligned_cols=167 Identities=16% Similarity=0.206 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 020098 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQ-RDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (331)
Q Consensus 75 ~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~-~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~ 153 (331)
.++.+.+..++++|- .+.|+.+ .|...|-+.+++.+.+... ....+++|+++-+. .++|-
T Consensus 81 ~~a~~Av~~al~Sgk-----~N~Yaps--~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~------------qAIe~ 141 (447)
T KOG0259|consen 81 QEAEQAVVDALRSGK-----GNGYAPS--VGILPARRAVAEYLNRDLPNKLTADDVVLTSGCS------------QAIEL 141 (447)
T ss_pred HHHHHHHHHHHhcCC-----CCCcCCc--cccHHHHHHHHHHhhcCCCCccCcCceEEeccch------------HHHHH
Confidence 677778888888874 3567663 2455788899999765442 23579999999883 12222
Q ss_pred HHHh--------------------------hCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEee-------cC
Q 020098 154 SLFR--------------------------LGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVS-------NY 200 (331)
Q Consensus 154 sL~~--------------------------Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs-------~~ 200 (331)
.+.. |-+.|.|++ |+. +-+-=++.++.|.++..+--+=+- -|
T Consensus 142 ~i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlL----Pe~-~weIDL~~veal~DENT~AivviNP~NPcGnVy 216 (447)
T KOG0259|consen 142 AISSLANPGANILLPRPGFPLYDTRAIYSGLEVRYYDLL----PEK-DWEIDLDGVEALADENTVAIVVINPNNPCGNVY 216 (447)
T ss_pred HHHHhcCCCCceecCCCCCchHHHhhhhcCceeEeeccc----Ccc-cceechHHHHHhhccCeeEEEEeCCCCCCcccc
Confidence 2222 223333331 110 111126778899998877654432 26
Q ss_pred cHHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHHHH-HcCCeEEEcccCccccccCCCCCCC
Q 020098 201 SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACD-ELGITLIAYCPIAQGALTGKYTPQN 268 (331)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~-~~gi~v~a~s~l~~G~L~~~~~~~~ 268 (331)
+-++++++++.+++.++.+..-.+--+...... ..++..+ ..-+.|++-+.+..|++.-.|+-.+
T Consensus 217 s~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~---pfvpmg~fssiVPVitlggisKrW~VPGWRlGW 282 (447)
T KOG0259|consen 217 SEDHLKKIAETAKKLGIMVIADEVYGHTVFGDK---PFVPMGKFSSIVPVITLGGISKRWIVPGWRLGW 282 (447)
T ss_pred cHHHHHHHHHHHHHhCCeEEehhhcceeecCCC---CccchhhccccCceEeecccccccccCCceeee
Confidence 779999999999998887766665555554443 2555555 4467888888888888776665554
No 23
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=85.68 E-value=4.7 Score=39.11 Aligned_cols=80 Identities=13% Similarity=0.059 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 020098 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (331)
Q Consensus 75 ~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~s 154 (331)
.....++++|++.|++++||+..... ...+.+..+ +..+.+..-+|.. +..+.-.....+++-
T Consensus 79 ~~~~~i~ka~i~~gv~yvDts~~~~~---------~~~~~~~a~-------~Agit~v~~~G~d-PGi~nv~a~~a~~~~ 141 (389)
T COG1748 79 FVDLTILKACIKTGVDYVDTSYYEEP---------PWKLDEEAK-------KAGITAVLGCGFD-PGITNVLAAYAAKEL 141 (389)
T ss_pred hhhHHHHHHHHHhCCCEEEcccCCch---------hhhhhHHHH-------HcCeEEEcccCcC-cchHHHHHHHHHHHh
Confidence 45568999999999999999977665 333333332 3567777777642 334444444444444
Q ss_pred HHhhCCCcccEEEeccCCC
Q 020098 155 LFRLGLSSVELYQLHWAGI 173 (331)
Q Consensus 155 L~~Lg~d~iDl~~lh~p~~ 173 (331)
.. .+++||+|..+.|++
T Consensus 142 ~~--~i~si~iy~g~~g~~ 158 (389)
T COG1748 142 FD--EIESIDIYVGGLGEH 158 (389)
T ss_pred hc--cccEEEEEEecCCCC
Confidence 43 688999999998876
No 24
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=84.88 E-value=35 Score=32.07 Aligned_cols=161 Identities=17% Similarity=0.154 Sum_probs=90.7
Q ss_pred chhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 020098 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (331)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~ 149 (331)
...+.++..++++.+.+.|++.|.-.. |-..- . ..-.+++.. +++.. .-.++.|+|-... +.+
T Consensus 47 ~~ls~eei~~~i~~~~~~gi~~I~~tG--GEPll-~-~~l~~li~~-i~~~~---~~~~i~itTNG~l---------l~~ 109 (331)
T PRK00164 47 ELLSLEEIERLVRAFVALGVRKVRLTG--GEPLL-R-KDLEDIIAA-LAALP---GIRDLALTTNGYL---------LAR 109 (331)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEEC--CCCcC-c-cCHHHHHHH-HHhcC---CCceEEEEcCchh---------HHH
Confidence 456779999999999999999877532 21110 0 011222222 33321 0246777776411 112
Q ss_pred HHHHHHHhhCCCcccEEEeccCCC---------CChHHHHHHHHHHHHcCc----eeEEEeecCcHHHHHHHHHHHHhcC
Q 020098 150 ALKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGL----VKAVGVSNYSEKRLRNAYEKLKKRG 216 (331)
Q Consensus 150 ~v~~sL~~Lg~d~iDl~~lh~p~~---------~~~~~~~~~L~~l~~~G~----i~~iGvs~~~~~~l~~~~~~~~~~~ 216 (331)
. -..|...|++.|- +-+|..++ ...+.++++++.+++.|. |..+.+.+.+.+++.++++.+...+
T Consensus 110 ~-~~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~g 187 (331)
T PRK00164 110 R-AAALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRG 187 (331)
T ss_pred H-HHHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCC
Confidence 2 2345555665543 44454433 247889999999999985 3355555667788888888887666
Q ss_pred CCeeeeeecccccccCcc--------ccchhHHHHHcCCeEEE
Q 020098 217 IPLASNQVNYSLIYRKPE--------ENGVKAACDELGITLIA 251 (331)
Q Consensus 217 ~~~~~~q~~~n~~~~~~~--------~~~~l~~~~~~gi~v~a 251 (331)
+. +.-++|.++..... ..++++..+++++.+..
T Consensus 188 v~--v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 228 (331)
T PRK00164 188 IQ--LRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQP 228 (331)
T ss_pred Ce--EEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCcccc
Confidence 43 33344444332210 11467777777654433
No 25
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=83.78 E-value=32 Score=31.14 Aligned_cols=158 Identities=12% Similarity=0.067 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 020098 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (331)
Q Consensus 74 ~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~ 153 (331)
.++..+.++.+++.|++.|-.--.-.. . .+..+=+.+++.. .+++.|..... ...+.+...+-+ +
T Consensus 86 ~~~~~~~~~~~~~~G~~~~KiKvg~~~-~------~d~~~v~~vr~~~----g~~~~l~vDan---~~~~~~~a~~~~-~ 150 (265)
T cd03315 86 PAEVAEEARRALEAGFRTFKLKVGRDP-A------RDVAVVAALREAV----GDDAELRVDAN---RGWTPKQAIRAL-R 150 (265)
T ss_pred HHHHHHHHHHHHHCCCCEEEEecCCCH-H------HHHHHHHHHHHhc----CCCCEEEEeCC---CCcCHHHHHHHH-H
Confidence 356667778888999998875321111 0 1222233444332 23555544432 234444333322 2
Q ss_pred HHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCcee-EEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccC
Q 020098 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (331)
Q Consensus 154 sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~-~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~ 232 (331)
.|+.++ +.+++.|-.. +-++.+.++++.-.+. ..|=+-++.+.+.++++. ...+++|+.....-.-
T Consensus 151 ~l~~~~-----i~~iEeP~~~---~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~-----~~~d~v~~k~~~~GGi 217 (265)
T cd03315 151 ALEDLG-----LDYVEQPLPA---DDLEGRAALARATDTPIMADESAFTPHDAFRELAL-----GAADAVNIKTAKTGGL 217 (265)
T ss_pred HHHhcC-----CCEEECCCCc---ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHh-----CCCCEEEEecccccCH
Confidence 334444 4445555432 2356677777776554 445555678888887654 4577777776554331
Q ss_pred ccccchhHHHHHcCCeEEEcccCcccc
Q 020098 233 PEENGVKAACDELGITLIAYCPIAQGA 259 (331)
Q Consensus 233 ~~~~~~l~~~~~~gi~v~a~s~l~~G~ 259 (331)
.+-..+.+.|+++|+.+...+.+..++
T Consensus 218 ~~~~~~~~~A~~~gi~~~~~~~~~s~i 244 (265)
T cd03315 218 TKAQRVLAVAEALGLPVMVGSMIESGL 244 (265)
T ss_pred HHHHHHHHHHHHcCCcEEecCccchHH
Confidence 121248999999999999987766543
No 26
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=83.60 E-value=27 Score=33.19 Aligned_cols=157 Identities=13% Similarity=0.078 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcCcCCC--CCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 020098 74 MKAAKAAFDTSLDNGITFFDTAEVYGSR--ASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (331)
Q Consensus 74 ~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g--~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v 151 (331)
.++..+.+..+.+.|++.|-.--..+.. .. ..-+..+=+++++.. .+++.|..... ...+.+...
T Consensus 140 ~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~---~~~d~~~v~~ir~~~----g~~~~l~vDaN---~~~~~~~a~--- 206 (357)
T cd03316 140 PEELAEEAKRAVAEGFTAVKLKVGGPDSGGED---LREDLARVRAVREAV----GPDVDLMVDAN---GRWDLAEAI--- 206 (357)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCcchHH---HHHHHHHHHHHHHhh----CCCCEEEEECC---CCCCHHHHH---
Confidence 4666777788889999988753222110 00 000122223333322 24566666552 234544433
Q ss_pred HHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCcee-EEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccc
Q 020098 152 KDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (331)
Q Consensus 152 ~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~-~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~ 230 (331)
+.+++|. ..++.+++.|-.. +-++.+.++++.-.+. ..|=+.++++.+.++++. ...+++|+...-.-
T Consensus 207 -~~~~~l~--~~~i~~iEqP~~~---~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~-----~~~d~v~~k~~~~G 275 (357)
T cd03316 207 -RLARALE--EYDLFWFEEPVPP---DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEA-----GAVDIIQPDVTKVG 275 (357)
T ss_pred -HHHHHhC--ccCCCeEcCCCCc---cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHh-----CCCCEEecCccccC
Confidence 2333332 2355566666432 2466777888776554 444555688888888654 35777777655432
Q ss_pred cCccccchhHHHHHcCCeEEEccc
Q 020098 231 RKPEENGVKAACDELGITLIAYCP 254 (331)
Q Consensus 231 ~~~~~~~~l~~~~~~gi~v~a~s~ 254 (331)
.-..-..+.+.|+++|+.++.++.
T Consensus 276 Gi~~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 276 GITEAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred CHHHHHHHHHHHHHcCCeEeccCC
Confidence 211112589999999999887764
No 27
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=83.36 E-value=9.8 Score=34.29 Aligned_cols=109 Identities=18% Similarity=0.089 Sum_probs=65.0
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCC-ChHHHHHHHHHHHHcC-ceeEEEeecCcHHHHHHHHHHHHhcCCC
Q 020098 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-GNEGFIDGLGDAVEQG-LVKAVGVSNYSEKRLRNAYEKLKKRGIP 218 (331)
Q Consensus 141 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~-~~~~~~~~L~~l~~~G-~i~~iGvs~~~~~~l~~~~~~~~~~~~~ 218 (331)
.++.+...+-++ .|..+|+++|.+-..-.+... ..++.++.++++.+.+ .++...++....+.++.+.+ .+
T Consensus 15 ~~s~e~~~~i~~-~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~----~g-- 87 (265)
T cd03174 15 TFSTEDKLEIAE-ALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALE----AG-- 87 (265)
T ss_pred CCCHHHHHHHHH-HHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHh----CC--
Confidence 355555555444 477889988888766544221 2356788889999988 56666666655455555533 23
Q ss_pred eeeeeecccccc--------cCcc-----ccchhHHHHHcCCeEEEcccCc
Q 020098 219 LASNQVNYSLIY--------RKPE-----ENGVKAACDELGITLIAYCPIA 256 (331)
Q Consensus 219 ~~~~q~~~n~~~--------~~~~-----~~~~l~~~~~~gi~v~a~s~l~ 256 (331)
++.+++.+..-+ +..+ -...++.+++.|+.+...-...
T Consensus 88 ~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~ 138 (265)
T cd03174 88 VDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDA 138 (265)
T ss_pred cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEee
Confidence 444554444331 1110 0147888899999877655333
No 28
>PRK07945 hypothetical protein; Provisional
Probab=82.95 E-value=44 Score=31.75 Aligned_cols=197 Identities=12% Similarity=0.026 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHh---ccCCCCCC-cEEEEecCCCCCCCCCHHHHHHH
Q 020098 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKE---RKQRDPEV-EVTVATKFAALPWRLGRQSVLAA 150 (331)
Q Consensus 75 ~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~---~~~~~~R~-~~~i~tK~~~~~~~~~~~~i~~~ 150 (331)
....+++.+|.+.|+..+=.+++......+ ..-+..-+-..+.. ..+.. ++ +|++..-++..+ +.+.+..
T Consensus 111 ~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~-~~~~~~~l~~y~~~i~~l~~ky-~~I~Il~GiE~d~~~-~g~~~~~--- 184 (335)
T PRK07945 111 SPIEEMARTAAALGHEYCALTDHSPRLTVA-NGLSAERLRKQLDVVAELNEEL-APFRILTGIEVDILD-DGSLDQE--- 184 (335)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCCCccCC-CCCCHHHHHHHHHHHHHHHHhc-CCceEEEEeEecccC-CCCcchh---
Confidence 457789999999999988777664321000 00012222222221 11111 12 233333333222 1222322
Q ss_pred HHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeec------------CcHHHHHHHHHHHHhcCCC
Q 020098 151 LKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN------------YSEKRLRNAYEKLKKRGIP 218 (331)
Q Consensus 151 v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~------------~~~~~l~~~~~~~~~~~~~ 218 (331)
++.|+. .||+ +..+|+....+.++..+.|.++.+.+++..||=-+ .....++++++.+...+..
T Consensus 185 -~~~l~~--~D~v-IgSvH~~~~~~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e~g~~ 260 (335)
T PRK07945 185 -PELLDR--LDVV-VASVHSKLRMDAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACREHGTA 260 (335)
T ss_pred -HHHHHh--CCEE-EEEeecCCCCCHHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHHhCCE
Confidence 233333 5665 67779865555667778888888888877777321 1112245666667766666
Q ss_pred eeeeeecccccccCccccchhHHHHHcCCeEEEcccCccccccCCCCCCCCCCCCCCCccchhHHhhHHHHHHHHHHHHH
Q 020098 219 LASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGE 298 (331)
Q Consensus 219 ~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~la~ 298 (331)
+.+|--... ..+.. .+++.|++.|+.+ +.+.-+.. +..... ...-.++++
T Consensus 261 lEINt~~~r---~~P~~-~il~~a~e~G~~v-tigSDAH~---------------------p~~v~~----~~~~~~~a~ 310 (335)
T PRK07945 261 VEINSRPER---RDPPT-RLLRLALDAGCLF-SIDTDAHA---------------------PGQLDW----LGYGCERAE 310 (335)
T ss_pred EEEeCCCCC---CCChH-HHHHHHHHcCCeE-EecCCCCC---------------------hhhcch----HHHHHHHHH
Confidence 666533222 22222 4899999999875 33333321 110000 113567778
Q ss_pred hcCCCHHHHHHHh
Q 020098 299 NYSKTSTQNSPCM 311 (331)
Q Consensus 299 ~~g~s~~qval~~ 311 (331)
+.|.++..|.-.|
T Consensus 311 ~~g~~~~~i~n~~ 323 (335)
T PRK07945 311 EAGVPADRIVNTW 323 (335)
T ss_pred HcCCCHHHcccCC
Confidence 8888887776544
No 29
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=82.86 E-value=43 Score=31.57 Aligned_cols=131 Identities=15% Similarity=0.169 Sum_probs=79.6
Q ss_pred chhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCC-chHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHH
Q 020098 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAI-NSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL 148 (331)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~-~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~ 148 (331)
...+.++..++++.+.+.|+..|--+ | |+-. .. .-++++. .+++.+. -.++.|+|-... +.
T Consensus 43 ~~ls~eei~~li~~~~~~Gv~~I~~t---G-GEPl-lr~dl~~li~-~i~~~~~---l~~i~itTNG~l---------l~ 104 (329)
T PRK13361 43 QVLSLEELAWLAQAFTELGVRKIRLT---G-GEPL-VRRGCDQLVA-RLGKLPG---LEELSLTTNGSR---------LA 104 (329)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEE---C-cCCC-ccccHHHHHH-HHHhCCC---CceEEEEeChhH---------HH
Confidence 34677899999999999999888653 2 2110 00 0122222 2233220 125666666411 12
Q ss_pred HHHHHHHHhhCCCcccEEEeccCCC---------CChHHHHHHHHHHHHcCc----eeEEEeecCcHHHHHHHHHHHHhc
Q 020098 149 AALKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGL----VKAVGVSNYSEKRLRNAYEKLKKR 215 (331)
Q Consensus 149 ~~v~~sL~~Lg~d~iDl~~lh~p~~---------~~~~~~~~~L~~l~~~G~----i~~iGvs~~~~~~l~~~~~~~~~~ 215 (331)
+ .-+.|+..|+++|. +-|+..++ ...+.+++.++.+++.|. |..+.+.+.+.+++.++++.+...
T Consensus 105 ~-~~~~L~~aGl~~v~-ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~ 182 (329)
T PRK13361 105 R-FAAELADAGLKRLN-ISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRER 182 (329)
T ss_pred H-HHHHHHHcCCCeEE-EEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhc
Confidence 2 34556677877765 45565543 236789999999999985 334555567788899998888877
Q ss_pred CCCee
Q 020098 216 GIPLA 220 (331)
Q Consensus 216 ~~~~~ 220 (331)
++.+.
T Consensus 183 gi~~~ 187 (329)
T PRK13361 183 GLDIA 187 (329)
T ss_pred CCeEE
Confidence 75443
No 30
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=82.73 E-value=20 Score=31.83 Aligned_cols=34 Identities=9% Similarity=0.048 Sum_probs=27.7
Q ss_pred CchhhHHHHHHHHHHHHHCCCCeEECCcCcCCCC
Q 020098 69 WDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRA 102 (331)
Q Consensus 69 ~~~~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~ 102 (331)
++..+.++..++++.|.+.||+-+=..++|-+|+
T Consensus 14 DGp~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~ 47 (254)
T COG4464 14 DGPKSLEESLAMLREAVRQGVTKIVATSHHLHGR 47 (254)
T ss_pred CCCCcHHHHHHHHHHHHHcCceEEeecccccCCc
Confidence 3456679999999999999999887777777653
No 31
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=82.22 E-value=37 Score=30.92 Aligned_cols=144 Identities=16% Similarity=0.118 Sum_probs=79.2
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEE-eccCCC--CChHH----HHHHHHHHHHcCceeEEEeecCcHHHHHHHHHHHHh
Q 020098 142 LGRQSVLAALKDSLFRLGLSSVELYQ-LHWAGI--WGNEG----FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK 214 (331)
Q Consensus 142 ~~~~~i~~~v~~sL~~Lg~d~iDl~~-lh~p~~--~~~~~----~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~ 214 (331)
++.+.+.+..++.+ +-|-|+||+=. --+|.. .+.++ +...++.+++.-.+- |.+-++.++.++++++.
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~--- 95 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEA--- 95 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHh---
Confidence 34555555544443 44889999853 334544 22333 333456666553343 88999999999999765
Q ss_pred cCCCeeeeeecccccccCccccchhHHHHHcCCeEEEcccCccccccCCCCCCCCCCCCCCCccchhHHhhHHHHHHHHH
Q 020098 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIK 294 (331)
Q Consensus 215 ~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~ 294 (331)
....+|-+.. .... . .+++.++++|..++.+.. .|. |.......+.+...+.....++...
T Consensus 96 --G~~iINdisg--~~~~-~--~~~~l~~~~~~~vV~m~~--~g~----------p~~~~~~~~~~~~~~~~~~~~~~~i 156 (257)
T cd00739 96 --GADIINDVSG--GSDD-P--AMLEVAAEYGAPLVLMHM--RGT----------PKTMQENPYYEDVVDEVLSFLEARL 156 (257)
T ss_pred --CCCEEEeCCC--CCCC-h--HHHHHHHHcCCCEEEECC--CCC----------CcccccCCCcccHHHHHHHHHHHHH
Confidence 3333333322 2211 2 489999999999999543 221 1111101111122233334445666
Q ss_pred HHHHhcCCCHHHHHH
Q 020098 295 ELGENYSKTSTQNSP 309 (331)
Q Consensus 295 ~la~~~g~s~~qval 309 (331)
+.|.++|++..++.+
T Consensus 157 ~~~~~~Gi~~~~Ii~ 171 (257)
T cd00739 157 EAAESAGVARNRIIL 171 (257)
T ss_pred HHHHHcCCCHHHEEE
Confidence 778888887655543
No 32
>PRK08609 hypothetical protein; Provisional
Probab=82.06 E-value=37 Score=34.79 Aligned_cols=191 Identities=15% Similarity=0.118 Sum_probs=106.7
Q ss_pred HHHHHHHHHHCCCCeEECCcCcCC-----CCCCCCCchHHHHHHH---HHhccCCCCCCcEEEEecCCCCCCCCCHHHHH
Q 020098 77 AKAAFDTSLDNGITFFDTAEVYGS-----RASFGAINSETLLGRF---IKERKQRDPEVEVTVATKFAALPWRLGRQSVL 148 (331)
Q Consensus 77 ~~~~l~~A~~~Gvn~~Dta~~Yg~-----g~~~~~~~sE~~iG~~---l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~ 148 (331)
..+++..|.+.|+.+|=.++++.. |.+ ...+-.. ++...+..+.=+|++..-+...+ +.. .
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~------~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i~~-~g~----~ 419 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLT------EERLLEQAEEIKALNEKYPEIDILSGIEMDILP-DGS----L 419 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCC------HHHHHHHHHHHHHHHHhcCCCeEEEEEEEeecC-Ccc----h
Confidence 455999999999999988888632 222 3333222 22222111111344444443221 111 2
Q ss_pred HHHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeec------C--cHHHHHHHHHHHHhcCCCee
Q 020098 149 AALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN------Y--SEKRLRNAYEKLKKRGIPLA 220 (331)
Q Consensus 149 ~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~------~--~~~~l~~~~~~~~~~~~~~~ 220 (331)
.-.+..|+. .||+ +.-+|++-..+.+++++.+.++.+.|.+.-||=-. + -...++++++.+...|..+.
T Consensus 420 d~~~~~L~~--~D~v-I~SvH~~~~~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G~~lE 496 (570)
T PRK08609 420 DYDDEVLAE--LDYV-IAAIHSSFSQSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETNTALE 496 (570)
T ss_pred hhcHHHHHh--hCEE-EEEeecCCCCCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhCCEEE
Confidence 222334443 5665 77778764455678889999999998877665332 1 13556777776666665444
Q ss_pred eeeecccccccCccccchhHHHHHcCCeEEEcccCccccccCCCCCCCCCCCCCCCccchhHHhhHHHHHHHHHHHHHhc
Q 020098 221 SNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENY 300 (331)
Q Consensus 221 ~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~la~~~ 300 (331)
+| -+.+..... ..++..|++.|+.+ +.++-+... ..+. -++.-..+|++-
T Consensus 497 IN---a~~~r~~~~-~~~~~~~~e~Gv~i-~igSDAH~~---------------------~~l~----~~~~~v~~ar~~ 546 (570)
T PRK08609 497 LN---ANPNRLDLS-AEHLKKAQEAGVKL-AINTDAHHT---------------------EMLD----DMKYGVATARKG 546 (570)
T ss_pred Ec---CCccccCcc-HHHHHHHHHcCCEE-EEECCCCCh---------------------hhhC----cHHHHHHHHHHc
Confidence 44 433322222 24899999999974 444444321 1011 112566778888
Q ss_pred CCCHHHHHHHh
Q 020098 301 SKTSTQNSPCM 311 (331)
Q Consensus 301 g~s~~qval~~ 311 (331)
+.++.+|.-.|
T Consensus 547 ~~~~~~v~N~~ 557 (570)
T PRK08609 547 WIQKDRVINTW 557 (570)
T ss_pred CCCHHHcccCC
Confidence 88887775444
No 33
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=81.23 E-value=9.1 Score=33.37 Aligned_cols=153 Identities=18% Similarity=0.180 Sum_probs=96.8
Q ss_pred HHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH----
Q 020098 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS---- 154 (331)
Q Consensus 79 ~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~s---- 154 (331)
++|..-++.|-+.+|-....|. +-..|++.. ++.. .| -..+.+.+.+++.+-
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG~------------LL~~L~~~k------~v~g---~G---vEid~~~v~~cv~rGv~Vi 60 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDGE------------LLAYLKDEK------QVDG---YG---VEIDPDNVAACVARGVSVI 60 (193)
T ss_pred HHHHHHcCCCCEEEecCCCchH------------HHHHHHHhc------CCeE---EE---EecCHHHHHHHHHcCCCEE
Confidence 4566677889999997665542 334554421 1110 01 235566666665544
Q ss_pred -------HHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecCcHHHHHHHHHHHHhcCCCeeeeeeccc
Q 020098 155 -------LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (331)
Q Consensus 155 -------L~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n 227 (331)
|....-+..|.+.+...-. ........|+++.+-|+-.-|++.||..+....-+ -..|-.|..-..+|+
T Consensus 61 q~Dld~gL~~f~d~sFD~VIlsqtLQ-~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l---~~~GrmPvt~~lPy~ 136 (193)
T PF07021_consen 61 QGDLDEGLADFPDQSFDYVILSQTLQ-AVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQL---LLRGRMPVTKALPYE 136 (193)
T ss_pred ECCHHHhHhhCCCCCccEEehHhHHH-hHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHH---HhcCCCCCCCCCCCc
Confidence 4444444555555443211 12333455778888898888999999888776553 223446777888888
Q ss_pred ccccCccc----cchhHHHHHcCCeEEEcccCcccc
Q 020098 228 LIYRKPEE----NGVKAACDELGITLIAYCPIAQGA 259 (331)
Q Consensus 228 ~~~~~~~~----~~~l~~~~~~gi~v~a~s~l~~G~ 259 (331)
-++...-. .+..++|++.||.|.-..++..+.
T Consensus 137 WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 137 WYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred ccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 77765422 258899999999999999988865
No 34
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=81.02 E-value=43 Score=30.43 Aligned_cols=145 Identities=12% Similarity=0.053 Sum_probs=82.3
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEE-eccCCCC--C----hHHHHHHHHHHHHcCceeEEEeecCcHHHHHHHHHHHHh
Q 020098 142 LGRQSVLAALKDSLFRLGLSSVELYQ-LHWAGIW--G----NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK 214 (331)
Q Consensus 142 ~~~~~i~~~v~~sL~~Lg~d~iDl~~-lh~p~~~--~----~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~ 214 (331)
.+.+.+.+..++.+ .-|-|.||+=. --+|... + .+.+...++.+++.-++ -|.+.++.++.++.+++.
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~--- 95 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKA--- 95 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHh---
Confidence 45666666655544 55889999853 3445531 1 23355666667665333 389999999999999776
Q ss_pred cCCCeeeeeecccccccCccccchhHHHHHcCCeEEEcccCccccccCCCCCCCCCCCCCCCccchhHHhhHHHHHHHHH
Q 020098 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIK 294 (331)
Q Consensus 215 ~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~ 294 (331)
....+|-+.. .... . ++++.++++|..++....-..|.- ... . ..| +...+.....++...
T Consensus 96 --g~~iINdis~--~~~~-~--~~~~l~~~~~~~vV~m~~~~~~~~----~~~-~------~~~-~~~~~~~~~~~~~~i 156 (258)
T cd00423 96 --GADIINDVSG--GRGD-P--EMAPLAAEYGAPVVLMHMDGTPQT----MQN-N------PYY-ADVVDEVVEFLEERV 156 (258)
T ss_pred --CCCEEEeCCC--CCCC-h--HHHHHHHHcCCCEEEECcCCCCcc----ccc-C------CCc-chHHHHHHHHHHHHH
Confidence 3333333322 2111 2 489999999999998765433210 000 0 001 222233344444555
Q ss_pred HHHHhcCCCHHHHHHH
Q 020098 295 ELGENYSKTSTQNSPC 310 (331)
Q Consensus 295 ~la~~~g~s~~qval~ 310 (331)
+.+.+.|++..++.+-
T Consensus 157 ~~~~~~Gi~~~~IilD 172 (258)
T cd00423 157 EAATEAGIPPEDIILD 172 (258)
T ss_pred HHHHHcCCCHHHEEEe
Confidence 5666778766655443
No 35
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=80.91 E-value=43 Score=30.34 Aligned_cols=106 Identities=9% Similarity=-0.122 Sum_probs=71.1
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCC--CChHHHHHHHHHHHHcCceeEEEeecCcHHHHHHHHHHHHhcCC
Q 020098 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGI 217 (331)
Q Consensus 140 ~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~--~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~ 217 (331)
..++.+.-.+-.+-..+.+++++|-|=.+..+.. .+..+++++.++|.++|.+- +=+|+-++....++.+.
T Consensus 71 G~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~v-lpyc~dd~~~ar~l~~~------ 143 (248)
T cd04728 71 GCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTV-LPYCTDDPVLAKRLEDA------ 143 (248)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc------
Confidence 4678887777788888888999999988888776 56889999999999999874 33566676666666443
Q ss_pred CeeeeeecccccccCc--cccchhHHHHH-cCCeEEEc
Q 020098 218 PLASNQVNYSLIYRKP--EENGVKAACDE-LGITLIAY 252 (331)
Q Consensus 218 ~~~~~q~~~n~~~~~~--~~~~~l~~~~~-~gi~v~a~ 252 (331)
.+++++.--.+.-... ...++++..++ .++.|++-
T Consensus 144 G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~e 181 (248)
T cd04728 144 GCAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIVD 181 (248)
T ss_pred CCCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEe
Confidence 4444433222222111 01135666666 47888774
No 36
>PRK05588 histidinol-phosphatase; Provisional
Probab=80.35 E-value=44 Score=30.11 Aligned_cols=169 Identities=10% Similarity=0.113 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHCCCCeEECCcCcCCCCCCC--C-CchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 020098 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFG--A-INSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (331)
Q Consensus 75 ~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~--~-~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v 151 (331)
....+.+++|.+.|+..+ .+++......+. . ..-+..+ +.++... ..+|++..-++.. ++ ....+
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~-~~i~~~~----~~~I~~GiE~~~~-----~~-~~~~~ 83 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYF-NKYSKYR----NNKLLLGIELGME-----KD-LIEEN 83 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHH-HHHHHHh----cCCcceEEEeccc-----CC-CHHHH
Confidence 456789999999999998 777742110000 0 0012222 2233332 2455555555431 22 34566
Q ss_pred HHHHHhhCCCcccEEEeccCCCC-----------ChHH----HHHHHHHHHH-cCceeEEE---ee----c---------
Q 020098 152 KDSLFRLGLSSVELYQLHWAGIW-----------GNEG----FIDGLGDAVE-QGLVKAVG---VS----N--------- 199 (331)
Q Consensus 152 ~~sL~~Lg~d~iDl~~lh~p~~~-----------~~~~----~~~~L~~l~~-~G~i~~iG---vs----~--------- 199 (331)
++.|++...|++ +..+|+.+.. +.++ .++.+.++.+ .+++.-|| +- .
T Consensus 84 ~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlgH~Dl~~r~~~~~~~~~~~~ 162 (255)
T PRK05588 84 KELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLGHIDYISRYAKYEDKEIYYD 162 (255)
T ss_pred HHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCccCHhHHHHcCccccccccHH
Confidence 778888888877 7888985321 2233 3466777666 46554443 11 0
Q ss_pred CcHHHHHHHHHHHHhcCCCeeeeeecccc-cccCccccchhHHHHHcCCeEEEcccCcc
Q 020098 200 YSEKRLRNAYEKLKKRGIPLASNQVNYSL-IYRKPEENGVKAACDELGITLIAYCPIAQ 257 (331)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~~~~~~q~~~n~-~~~~~~~~~~l~~~~~~gi~v~a~s~l~~ 257 (331)
.-...++++++.+...+..+.+|--.+.. ....+. ..+++.|++.|+.+++.++-+.
T Consensus 163 ~~~~~~~~il~~~~~~g~~lEINt~~l~~~~~~~~~-~~~l~~~~~~g~~~i~lgSDAH 220 (255)
T PRK05588 163 EFKEIIDEILKVLIEKEKVLEINTRRLDDKRSVENL-VKIYKRFYELGGKYITLGSDAH 220 (255)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECcccCCCCCCCCH-HHHHHHHHHcCCcEEEEECCCC
Confidence 01244566666666666655555422111 000011 1367778888877655555443
No 37
>PRK00208 thiG thiazole synthase; Reviewed
Probab=80.14 E-value=46 Score=30.20 Aligned_cols=106 Identities=10% Similarity=-0.117 Sum_probs=71.2
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCC--CChHHHHHHHHHHHHcCceeEEEeecCcHHHHHHHHHHHHhcCC
Q 020098 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGI 217 (331)
Q Consensus 140 ~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~--~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~ 217 (331)
..++.+.-.+-.+-..+.+++++|-|=.+-++.. .+..+++++.++|.++|.+- +=+|+-++....++.+.
T Consensus 71 G~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~v-lpyc~~d~~~ak~l~~~------ 143 (250)
T PRK00208 71 GCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLEEA------ 143 (250)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc------
Confidence 4678888777788888888999999988887775 46889999999999999874 33566676666666443
Q ss_pred CeeeeeecccccccCc--cccchhHHHHH-cCCeEEEc
Q 020098 218 PLASNQVNYSLIYRKP--EENGVKAACDE-LGITLIAY 252 (331)
Q Consensus 218 ~~~~~q~~~n~~~~~~--~~~~~l~~~~~-~gi~v~a~ 252 (331)
.++++..--.+.-... ...++++..++ .++.|++-
T Consensus 144 G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIve 181 (250)
T PRK00208 144 GCAAVMPLGAPIGSGLGLLNPYNLRIIIEQADVPVIVD 181 (250)
T ss_pred CCCEeCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEe
Confidence 4444433112222110 01135666666 47888774
No 38
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=79.91 E-value=12 Score=34.02 Aligned_cols=50 Identities=16% Similarity=0.078 Sum_probs=28.3
Q ss_pred chhHHHHHcCCeEEEcccCccccccCCCCCCCCCCCCCCCccchhHHhhHHHHHHHHHHHHHhcCC
Q 020098 237 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSK 302 (331)
Q Consensus 237 ~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~ 302 (331)
..++.|++.|+.++....... +. .+ ..+..++...+.+..+.++|+++|+
T Consensus 98 ~~i~~a~~lG~~~v~~~~~~~------~~---~~-------~~~~~~~~~~~~l~~l~~~a~~~gv 147 (284)
T PRK13210 98 KAIRLAQDLGIRTIQLAGYDV------YY---EE-------KSEETRQRFIEGLAWAVEQAAAAQV 147 (284)
T ss_pred HHHHHHHHhCCCEEEECCccc------cc---cc-------ccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 477888888888876421100 00 00 1123445556666677777888775
No 39
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=79.72 E-value=11 Score=34.51 Aligned_cols=50 Identities=18% Similarity=0.115 Sum_probs=31.8
Q ss_pred chhHHHHHcCCeEEEcccCccccccCCCCCCCCCCCCCCCccchhHHhhHHHHHHHHHHHHHhcCC
Q 020098 237 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSK 302 (331)
Q Consensus 237 ~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~ 302 (331)
..++.|++.|..++.... +... . .. ...+.+....+.+.++.++|+++|+
T Consensus 98 ~~i~~a~~lG~~~v~~~~--~~~~-----~----~~-----~~~~~~~~~~~~l~~l~~~A~~~Gv 147 (279)
T TIGR00542 98 KAIQLARDLGIRTIQLAG--YDVY-----Y----EE-----HDEETRRRFREGLKEAVELAARAQV 147 (279)
T ss_pred HHHHHHHHhCCCEEEecC--cccc-----c----Cc-----CCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 488889999999886532 1000 0 00 1233456667777888899999986
No 40
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=79.39 E-value=33 Score=31.05 Aligned_cols=50 Identities=16% Similarity=0.077 Sum_probs=31.9
Q ss_pred chhHHHHHcCCeEEEcccCccccccCCCCCCCCCCCCCCCccchhHHhhHHHHHHHHHHHHHhcCC
Q 020098 237 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSK 302 (331)
Q Consensus 237 ~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~ 302 (331)
..+++|+..|...+...|...|.. ....+.++...+.++.+.++|+++|+
T Consensus 94 ~~i~~a~~lGa~~i~~~~~~~~~~----------------~~~~~~~~~~~~~l~~l~~~a~~~gv 143 (275)
T PRK09856 94 LAMDMAKEMNAGYTLISAAHAGYL----------------TPPNVIWGRLAENLSELCEYAENIGM 143 (275)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCC----------------CCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 367888888888877665433310 01234455666677788888888876
No 41
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=79.05 E-value=41 Score=29.81 Aligned_cols=167 Identities=11% Similarity=0.083 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 020098 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (331)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v 151 (331)
.+.++..++++.-.+.||..|+.....-... ..+.+.+..+..+ ...+...+. ...+.++..+
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~------~~~~v~~~~~~~~----~~~~~~~~~-------~~~~~i~~~~ 73 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASED------DFEQVRRLREALP----NARLQALCR-------ANEEDIERAV 73 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHH------HHHHHHHHHHHHH----SSEEEEEEE-------SCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHH------HHHHhhhhhhhhc----ccccceeee-------ehHHHHHHHH
Confidence 5568888888888899999999982222211 1455666555554 223333222 3466666666
Q ss_pred HHHHHhhCCCcccEEEeccCCC------CC----hHHHHHHHHHHHHcCceeEEEeec---CcHHHHHHHHHHHHhcCCC
Q 020098 152 KDSLFRLGLSSVELYQLHWAGI------WG----NEGFIDGLGDAVEQGLVKAVGVSN---YSEKRLRNAYEKLKKRGIP 218 (331)
Q Consensus 152 ~~sL~~Lg~d~iDl~~lh~p~~------~~----~~~~~~~L~~l~~~G~i~~iGvs~---~~~~~l~~~~~~~~~~~~~ 218 (331)
+.. +..|.+.+.++.--++.. .. .+.+.+.++.+++.|.--.+++-. ++++.+.++.+.+...+..
T Consensus 74 ~~~-~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 152 (237)
T PF00682_consen 74 EAA-KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGAD 152 (237)
T ss_dssp HHH-HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-S
T ss_pred Hhh-HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCe
Confidence 544 567888877665433211 11 345666677778888887888744 4567777776666555433
Q ss_pred eeeeeecccccccCccccchhHHHHHc----CCeEEEcccCcc
Q 020098 219 LASNQVNYSLIYRKPEENGVKAACDEL----GITLIAYCPIAQ 257 (331)
Q Consensus 219 ~~~~q~~~n~~~~~~~~~~~l~~~~~~----gi~v~a~s~l~~ 257 (331)
..++-=.+..+.+.... +++...+++ .+++.++.-++-
T Consensus 153 ~i~l~Dt~G~~~P~~v~-~lv~~~~~~~~~~~l~~H~Hnd~Gl 194 (237)
T PF00682_consen 153 IIYLADTVGIMTPEDVA-ELVRALREALPDIPLGFHAHNDLGL 194 (237)
T ss_dssp EEEEEETTS-S-HHHHH-HHHHHHHHHSTTSEEEEEEBBTTS-
T ss_pred EEEeeCccCCcCHHHHH-HHHHHHHHhccCCeEEEEecCCccc
Confidence 22211122222222221 356655553 355666665554
No 42
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=78.44 E-value=50 Score=31.63 Aligned_cols=140 Identities=19% Similarity=0.181 Sum_probs=89.3
Q ss_pred ccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHC---CCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCC
Q 020098 49 TKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDN---GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDP 125 (331)
Q Consensus 49 s~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~---Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~ 125 (331)
..+|--|.++-. ++.......+.++..+++....+. =+-.+|..+..+.- ...+-+.+..
T Consensus 28 ~~~C~RC~~l~h---y~~~~~~~~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~--------~~~l~~~~~~------ 90 (360)
T TIGR03597 28 EVYCQRCFRLKH---YNEIQDVELNDDDFLNLLNSLGDSNALIVYVVDIFDFEGSL--------IPELKRFVGG------ 90 (360)
T ss_pred Ceeecchhhhhc---cCccccCCCCHHHHHHHHhhcccCCcEEEEEEECcCCCCCc--------cHHHHHHhCC------
Confidence 567777777644 333223345667777777666532 23366754433321 1222233321
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecCcHHHH
Q 020098 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (331)
Q Consensus 126 R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l 205 (331)
..-++|.+|+...+.....+.+...+.+.++..|....|++.+..-.....+++++.|.++.+.+.|-.+|.+|..-..+
T Consensus 91 ~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStl 170 (360)
T TIGR03597 91 NPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSL 170 (360)
T ss_pred CCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH
Confidence 45788999997544444566777777777888886545777777666678899999998887777889999999864333
No 43
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=77.05 E-value=31 Score=33.82 Aligned_cols=105 Identities=11% Similarity=0.048 Sum_probs=59.2
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCC-----cccEEEeccCCCCC-----hHHH
Q 020098 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS-----SVELYQLHWAGIWG-----NEGF 179 (331)
Q Consensus 110 E~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d-----~iDl~~lh~p~~~~-----~~~~ 179 (331)
|+-+-++|+...+..+.+-++|.|=+-. +-+-..++...+++..+ -+.++.++.|.... .+.+
T Consensus 66 ~~~L~~~i~~~~~~~~p~~I~v~~tC~~-------~liGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~~~~G~~~a 138 (428)
T cd01965 66 EDNLIEALKNLLSRYKPDVIGVLTTCLT-------ETIGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGSHETGYDNA 138 (428)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcch-------hhcCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCcHHHHHHHH
Confidence 7788888877654333456777777642 22333344444444322 35678888887632 2333
Q ss_pred HHHHHHH-------HHcCceeEEEeecCcHHHHHHHHHHHHhcCCCeee
Q 020098 180 IDGLGDA-------VEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (331)
Q Consensus 180 ~~~L~~l-------~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~ 221 (331)
+++|-+. ++.++|.-||-++.+...+.++.+..+..|+++.+
T Consensus 139 ~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~ 187 (428)
T cd01965 139 VKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPII 187 (428)
T ss_pred HHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEE
Confidence 4343322 23467888887766444455555556777765544
No 44
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.14 E-value=5.6 Score=37.48 Aligned_cols=154 Identities=18% Similarity=0.147 Sum_probs=87.0
Q ss_pred cccccceeeecCCCCcccccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCC--eEECCcCcCCCCCCCCCc
Q 020098 31 TVKTAEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGIT--FFDTAEVYGSRASFGAIN 108 (331)
Q Consensus 31 ~~~~~m~~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gvn--~~Dta~~Yg~g~~~~~~~ 108 (331)
++..+|.+.-++ .|..+-.+|+|+ +|.. .+..|-..|.+ .||+++.--
T Consensus 169 TvYspLk~~g~~-pG~~vgI~GlGG--LGh~------------------aVq~AKAMG~rV~vis~~~~kk--------- 218 (360)
T KOG0023|consen 169 TVYSPLKRSGLG-PGKWVGIVGLGG--LGHM------------------AVQYAKAMGMRVTVISTSSKKK--------- 218 (360)
T ss_pred EEeehhHHcCCC-CCcEEEEecCcc--cchH------------------HHHHHHHhCcEEEEEeCCchhH---------
Confidence 566688888888 588888999888 6665 46666667766 677652211
Q ss_pred hHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHH
Q 020098 109 SETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVE 188 (331)
Q Consensus 109 sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~ 188 (331)
| +++++.+ -+.+++++|- ++.+.. +..++ +.+.+.+--+ ....+-..+.-++.
T Consensus 219 -e----ea~~~LG----Ad~fv~~~~d--------~d~~~~-~~~~~-dg~~~~v~~~--------a~~~~~~~~~~lk~ 271 (360)
T KOG0023|consen 219 -E----EAIKSLG----ADVFVDSTED--------PDIMKA-IMKTT-DGGIDTVSNL--------AEHALEPLLGLLKV 271 (360)
T ss_pred -H----HHHHhcC----cceeEEecCC--------HHHHHH-HHHhh-cCcceeeeec--------cccchHHHHHHhhc
Confidence 3 5677776 2444444443 333322 22222 1222222211 22233456777889
Q ss_pred cCceeEEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHHHHHcCCeE
Q 020098 189 QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITL 249 (331)
Q Consensus 189 ~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v 249 (331)
.|++-.+|+-... ..+.-+ ..-+-...+-.+..-...+.+++++||.+++|..
T Consensus 272 ~Gt~V~vg~p~~~-~~~~~~-------~lil~~~~I~GS~vG~~ket~E~Ldf~a~~~ik~ 324 (360)
T KOG0023|consen 272 NGTLVLVGLPEKP-LKLDTF-------PLILGRKSIKGSIVGSRKETQEALDFVARGLIKS 324 (360)
T ss_pred CCEEEEEeCcCCc-ccccch-------hhhcccEEEEeeccccHHHHHHHHHHHHcCCCcC
Confidence 9999999997652 221111 0122334444554444445457999999987763
No 45
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=75.98 E-value=63 Score=29.45 Aligned_cols=98 Identities=17% Similarity=0.193 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEE-EeccCCC--CChH-H---HHHHHHHHHHc-CceeEEEeecCcHHHHHHHHHHHH
Q 020098 142 LGRQSVLAALKDSLFRLGLSSVELY-QLHWAGI--WGNE-G---FIDGLGDAVEQ-GLVKAVGVSNYSEKRLRNAYEKLK 213 (331)
Q Consensus 142 ~~~~~i~~~v~~sL~~Lg~d~iDl~-~lh~p~~--~~~~-~---~~~~L~~l~~~-G~i~~iGvs~~~~~~l~~~~~~~~ 213 (331)
.+++.+.+..++.+ .-|.++||+= .--+|+. ...+ | +...++.+++. +. -|.+-++.++.++.+++.
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~-- 94 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV--PISVDTYRAEVARAALEA-- 94 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHc--
Confidence 45666665555544 4588999993 2223443 1222 3 55556666665 43 388999999999999765
Q ss_pred hcCCCeeeeeecccccccCccccchhHHHHHcCCeEEEcc
Q 020098 214 KRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYC 253 (331)
Q Consensus 214 ~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s 253 (331)
....++-+..- . .+ ++++.++++|..++.+.
T Consensus 95 ---G~~iINsis~~--~--~~--~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 95 ---GADIINDVSGG--Q--DP--AMLEVAAEYGVPLVLMH 125 (257)
T ss_pred ---CCCEEEECCCC--C--Cc--hhHHHHHHcCCcEEEEe
Confidence 23334444332 1 12 48999999999999954
No 46
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=75.51 E-value=64 Score=29.32 Aligned_cols=108 Identities=12% Similarity=-0.001 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCC-hHHHHHHHHHHHHcCceeEEEeecCcHHHHHHHHHHHHhcCCCee
Q 020098 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (331)
Q Consensus 142 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~-~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~ 220 (331)
.+.+.+.+..++.++ -|.|+||+=. .|...+ .++.-..+..+++.-. .-|.+-+++++.++.+++.+. | ...
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~--G-~~i 95 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYGGLDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQ--G-KCV 95 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCCCCCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCC--C-CcE
Confidence 456777777776665 4999999854 233223 2333333333333212 238888999999999977532 2 333
Q ss_pred eeeecccccccCccccchhHHHHHcCCeEEEcccCccc
Q 020098 221 SNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (331)
Q Consensus 221 ~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G 258 (331)
++-+...-.+.... .+++.++++|..++....-..|
T Consensus 96 INsIs~~~~~e~~~--~~~~~~~~~~~~vV~m~~~~~g 131 (252)
T cd00740 96 VNSINLEDGEERFL--KVARLAKEHGAAVVVLAFDEQG 131 (252)
T ss_pred EEeCCCCCCccccH--HHHHHHHHhCCCEEEeccCCCC
Confidence 33333211111111 4778999999999987654344
No 47
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=75.45 E-value=73 Score=29.98 Aligned_cols=137 Identities=18% Similarity=0.072 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHHHHC-CCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 020098 72 RKMKAAKAAFDTSLDN-GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (331)
Q Consensus 72 ~~~~~~~~~l~~A~~~-Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~ 150 (331)
.+.++..++++..-+. ||+.+--+- |..-. .+...+.+.++........+.+-+.|+.-. ..+..+...
T Consensus 119 l~~~e~~~~i~~i~~~~~I~~VilSG--GDPl~----~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v----~~p~rit~e 188 (321)
T TIGR03822 119 LSPAELDAAFAYIADHPEIWEVILTG--GDPLV----LSPRRLGDIMARLAAIDHVKIVRFHTRVPV----ADPARVTPA 188 (321)
T ss_pred CCHHHHHHHHHHHHhCCCccEEEEeC--CCccc----CCHHHHHHHHHHHHhCCCccEEEEeCCCcc----cChhhcCHH
Confidence 4557777788766644 887553221 11100 012333344433321101244667777621 223344444
Q ss_pred HHHHHHhhCCCcccEEEeccCCC-CChHHHHHHHHHHHHcCceeE----E--EeecCcHHHHHHHHHHHHhcCCCeee
Q 020098 151 LKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKA----V--GVSNYSEKRLRNAYEKLKKRGIPLAS 221 (331)
Q Consensus 151 v~~sL~~Lg~d~iDl~~lh~p~~-~~~~~~~~~L~~l~~~G~i~~----i--Gvs~~~~~~l~~~~~~~~~~~~~~~~ 221 (331)
+-+.|++.|.. ..+.+|.... .-.++++++++.|++.|..-. + |+ |.+.+.+.++.+.+...++.+-.
T Consensus 189 ll~~L~~~g~~--v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv-Nd~~~~l~~l~~~l~~~gv~pyy 263 (321)
T TIGR03822 189 LIAALKTSGKT--VYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV-NDDPETLAALMRAFVECRIKPYY 263 (321)
T ss_pred HHHHHHHcCCc--EEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC-CCCHHHHHHHHHHHHhcCCeeEE
Confidence 55566666732 3577787544 225889999999999996211 1 33 56778888888777767664433
No 48
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=75.42 E-value=59 Score=29.73 Aligned_cols=139 Identities=12% Similarity=-0.013 Sum_probs=80.3
Q ss_pred CHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecCcHHHHHHHHHHHHhcCCCeeee
Q 020098 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (331)
Q Consensus 143 ~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~ 222 (331)
+.+.+.+..++. ..-|-|+||+-.=-.+ ....+.+...++.+++.-.+ -|.+-+++++.++.+++.++ ..+.+|
T Consensus 23 d~~~i~~~A~~~-~~~GAdiIDVg~~~~~-~eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~---G~~iIN 96 (261)
T PRK07535 23 DAAFIQKLALKQ-AEAGADYLDVNAGTAV-EEEPETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAK---GPPLIN 96 (261)
T ss_pred CHHHHHHHHHHH-HHCCCCEEEECCCCCc-hhHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCC---CCCEEE
Confidence 344444444333 2558899998643111 12234455566666554233 38899999999999977633 234443
Q ss_pred eecccccccCccccchhHHHHHcCCeEEEcccCccccccCCCCCCCCCCCCCCCccchhHHhhHHHHHHHHHHHHHhcCC
Q 020098 223 QVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSK 302 (331)
Q Consensus 223 q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~ 302 (331)
-+..- ....+ .+++.+++.|+.++.......|. |. ..+...+.++.+.+.|.++|+
T Consensus 97 sIs~~--~~~~~--~~~~l~~~~g~~vv~m~~~~~g~----------P~----------t~~~~~~~l~~~v~~a~~~GI 152 (261)
T PRK07535 97 SVSAE--GEKLE--VVLPLVKKYNAPVVALTMDDTGI----------PK----------DAEDRLAVAKELVEKADEYGI 152 (261)
T ss_pred eCCCC--CccCH--HHHHHHHHhCCCEEEEecCCCCC----------CC----------CHHHHHHHHHHHHHHHHHcCC
Confidence 33321 11112 48999999999999865433331 10 111223444566777889999
Q ss_pred CHHHHHHHh
Q 020098 303 TSTQNSPCM 311 (331)
Q Consensus 303 s~~qval~~ 311 (331)
++.++.+-=
T Consensus 153 ~~~~IilDP 161 (261)
T PRK07535 153 PPEDIYIDP 161 (261)
T ss_pred CHhHEEEeC
Confidence 887775554
No 49
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=74.26 E-value=35 Score=32.94 Aligned_cols=94 Identities=11% Similarity=0.087 Sum_probs=65.8
Q ss_pred EEeccCCC------------CChHHHHHHHHHHHHcCc----eeEEEee--cCcHHHHHHHHHHHHhcC----CCeeeee
Q 020098 166 YQLHWAGI------------WGNEGFIDGLGDAVEQGL----VKAVGVS--NYSEKRLRNAYEKLKKRG----IPLASNQ 223 (331)
Q Consensus 166 ~~lh~p~~------------~~~~~~~~~L~~l~~~G~----i~~iGvs--~~~~~~l~~~~~~~~~~~----~~~~~~q 223 (331)
+.||.|+. ++.+++++++.+..++.. +.++=+. |.+.++..++.+.++... .+..++-
T Consensus 232 iSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNL 311 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNL 311 (371)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEE
Confidence 78899875 568899999998875433 2233233 667888888877765321 1578899
Q ss_pred ecccccccCccc-------cchhHHHHHcCCeEEEcccCcccc
Q 020098 224 VNYSLIYRKPEE-------NGVKAACDELGITLIAYCPIAQGA 259 (331)
Q Consensus 224 ~~~n~~~~~~~~-------~~~l~~~~~~gi~v~a~s~l~~G~ 259 (331)
++||+.....+. ....+.++++||.+......+.-+
T Consensus 312 Ip~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~DI 354 (371)
T PRK14461 312 IPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGVEI 354 (371)
T ss_pred ecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcCh
Confidence 999997654322 146677889999999988777543
No 50
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=72.95 E-value=1e+02 Score=30.50 Aligned_cols=111 Identities=23% Similarity=0.166 Sum_probs=55.0
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecCcHHHHHHHHHHHHhcCCCe
Q 020098 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPL 219 (331)
Q Consensus 140 ~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~ 219 (331)
...+.+.+++.++..++ ++.++|++|.+.-....+ |.+.+++|++..-.-..-..+....+.+.....|+
T Consensus 225 PgqT~e~~~~~l~~~~~-l~~~~is~y~L~~~pgT~-------l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy-- 294 (449)
T PRK09058 225 PGQTPEIWQQDLAIVRD-LGLDGVDLYALNLLPGTP-------LAKAVEKGKLPPPATPAERADMYAYGVEFLAKAGW-- 294 (449)
T ss_pred CCCCHHHHHHHHHHHHh-cCCCEEEEeccccCCCCH-------HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCC--
Confidence 45778888888777654 889999988875422111 22334445442100000011222333333333332
Q ss_pred eeeeecccccccCccccchhHHHHHcCCeEEEcccCccccccC
Q 020098 220 ASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTG 262 (331)
Q Consensus 220 ~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~L~~ 262 (331)
.|++.+-+.+...+...-...-..+..+++.++-+.|.+.+
T Consensus 295 --~~yeis~far~~~~~~~~n~~~~~~~~~lg~G~gA~s~~~~ 335 (449)
T PRK09058 295 --RQLSNSHWARTTRERNLYNLLIKQGAECLPFGAGAGGSIGG 335 (449)
T ss_pred --eEEeeeeeecCCccccHHHHHHcCCCCEEEEccCcccccCC
Confidence 33344333333211113333344567788888888887754
No 51
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=72.53 E-value=18 Score=32.55 Aligned_cols=120 Identities=10% Similarity=-0.053 Sum_probs=64.6
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCC--CChHHHHHHHHHHHHcCceeEEEeecCcHH
Q 020098 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEK 203 (331)
Q Consensus 126 R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~--~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~ 203 (331)
++++.+.-... ..++.+.-.+-.+-..+.+++++|-|=.+-++.. .++-+++++-+.|+++|-+- +=-++-++-
T Consensus 60 ~~~~~lLPNTa---Gc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~V-lPY~~~D~v 135 (247)
T PF05690_consen 60 RSGYTLLPNTA---GCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPV 135 (247)
T ss_dssp CCTSEEEEE-T---T-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EE-EEEE-S-HH
T ss_pred ccCCEECCcCC---CCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEE-eecCCCCHH
Confidence 46666655543 4688888888888888999999999887777665 45789999999999999652 112233333
Q ss_pred HHHHHHHHHHhcCCCeeeeeecccccccCccc---cchhHHHHHcCCeEEEcccC
Q 020098 204 RLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE---NGVKAACDELGITLIAYCPI 255 (331)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~---~~~l~~~~~~gi~v~a~s~l 255 (331)
...++.+ ....+++.--+++-....- ..+-..+++.+|.|+.-.-+
T Consensus 136 ~akrL~d------~GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvDAGi 184 (247)
T PF05690_consen 136 LAKRLED------AGCAAVMPLGSPIGSGRGIQNPYNLRIIIERADVPVIVDAGI 184 (247)
T ss_dssp HHHHHHH------TT-SEBEEBSSSTTT---SSTHHHHHHHHHHGSSSBEEES--
T ss_pred HHHHHHH------CCCCEEEecccccccCcCCCCHHHHHHHHHhcCCcEEEeCCC
Confidence 3333322 2344444433333221100 01333444557777764433
No 52
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=72.15 E-value=36 Score=30.35 Aligned_cols=102 Identities=21% Similarity=0.242 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHcCceeEEEeec-CcHHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHHHHHcCCeEEEccc
Q 020098 176 NEGFIDGLGDAVEQGLVKAVGVSN-YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (331)
Q Consensus 176 ~~~~~~~L~~l~~~G~i~~iGvs~-~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~ 254 (331)
.+++.++|..++ +..|.... .+..|..++-+.|++.|.+... =++-++++ +++...-+.|..++.-+.
T Consensus 75 ve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~~~~-----PLWg~d~~--ell~e~~~~Gf~~~Iv~V 143 (223)
T COG2102 75 VEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLKVYA-----PLWGRDPE--ELLEEMVEAGFEAIIVAV 143 (223)
T ss_pred HHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCEEee-----cccCCCHH--HHHHHHHHcCCeEEEEEE
Confidence 456666666666 55555544 3567777777778888764322 12233334 588888888888888888
Q ss_pred CccccccCCCCCCCCCCCCCCCccchhHHhhHHHHHHHHHHHHHhcCCCHH
Q 020098 255 IAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTST 305 (331)
Q Consensus 255 l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~ 305 (331)
-+-|+-.. + .++.++ .+.++.+..+.++||++|+
T Consensus 144 sa~gL~~~-~---------lGr~i~-------~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 144 SAEGLDES-W---------LGRRID-------REFLEELKSLNRRYGIHPA 177 (223)
T ss_pred eccCCChH-H---------hCCccC-------HHHHHHHHHHHHhcCCCcc
Confidence 88775210 0 001121 1345589999999998764
No 53
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=71.53 E-value=90 Score=29.29 Aligned_cols=133 Identities=17% Similarity=0.175 Sum_probs=78.2
Q ss_pred chhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 020098 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (331)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~ 149 (331)
...+.++..++++.+.+.|++.|..+ | |+-.--..-.+++.. ++.... -.++.|+|-.. .-.+
T Consensus 41 ~~ls~eei~~~i~~~~~~gv~~V~lt---G-GEPll~~~l~~li~~-i~~~~g---i~~v~itTNG~-----ll~~---- 103 (334)
T TIGR02666 41 ELLTFEEIERLVRAFVGLGVRKVRLT---G-GEPLLRKDLVELVAR-LAALPG---IEDIALTTNGL-----LLAR---- 103 (334)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEE---C-ccccccCCHHHHHHH-HHhcCC---CCeEEEEeCch-----hHHH----
Confidence 34677999999999999999887643 2 211000011233332 333210 13677888541 1111
Q ss_pred HHHHHHHhhCCCcccEEEeccCCC----------CChHHHHHHHHHHHHcCc--e--eEEEeecCcHHHHHHHHHHHHhc
Q 020098 150 ALKDSLFRLGLSSVELYQLHWAGI----------WGNEGFIDGLGDAVEQGL--V--KAVGVSNYSEKRLRNAYEKLKKR 215 (331)
Q Consensus 150 ~v~~sL~~Lg~d~iDl~~lh~p~~----------~~~~~~~~~L~~l~~~G~--i--~~iGvs~~~~~~l~~~~~~~~~~ 215 (331)
.-+.|++.|+++|- +-++..++ ...+.+++.++.+++.|. | ..+-+.+.+.+++.++++.+...
T Consensus 104 -~~~~L~~~gl~~v~-ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~~ 181 (334)
T TIGR02666 104 -HAKDLKEAGLKRVN-VSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAKER 181 (334)
T ss_pred -HHHHHHHcCCCeEE-EecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 23446666766543 33454332 136889999999999985 2 33444567778899998888877
Q ss_pred CCCeee
Q 020098 216 GIPLAS 221 (331)
Q Consensus 216 ~~~~~~ 221 (331)
++.+.+
T Consensus 182 gv~~~~ 187 (334)
T TIGR02666 182 GVTLRF 187 (334)
T ss_pred CCeEEE
Confidence 765433
No 54
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=70.57 E-value=11 Score=32.25 Aligned_cols=85 Identities=16% Similarity=0.104 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcCCCeeeeeecccccccCc-----c---------ccchhHHHHHcCCeEEEcccCccccccCCCCCCCC
Q 020098 204 RLRNAYEKLKKRGIPLASNQVNYSLIYRKP-----E---------ENGVKAACDELGITLIAYCPIAQGALTGKYTPQNP 269 (331)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~-----~---------~~~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~ 269 (331)
.++++.+.++..++.+..+....+...... . -...++.|+..|+..+...+-..+..
T Consensus 28 ~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~--------- 98 (213)
T PF01261_consen 28 EAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYIVVHSGRYPSG--------- 98 (213)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEEEEECTTESSS---------
T ss_pred HHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCceeecCcccccc---------
Confidence 455666666777766555444444333211 0 02588999999999888665421110
Q ss_pred CCCCCCCccchhHHhhHHHHHHHHHHHHHhcCC
Q 020098 270 PTGPRGRIYTAEYLRNLQPLLNRIKELGENYSK 302 (331)
Q Consensus 270 p~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~ 302 (331)
.........+...+.+..+.++|+++|+
T Consensus 99 -----~~~~~~~~~~~~~~~l~~l~~~a~~~gv 126 (213)
T PF01261_consen 99 -----PEDDTEENWERLAENLRELAEIAEEYGV 126 (213)
T ss_dssp -----TTSSHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred -----cCCCHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 0123345677788888899999999986
No 55
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=70.55 E-value=87 Score=28.69 Aligned_cols=161 Identities=17% Similarity=0.152 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHh-ccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 020098 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKE-RKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (331)
Q Consensus 74 ~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~-~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~ 152 (331)
.+...+.++.--+.|+.+|..++.=+.+.. .+=..++..|++ .+. +-=..++. .+.++..+...+.
T Consensus 14 ~~~l~~~~~~l~~~~pd~isvT~~~~~~~~----~~t~~~a~~l~~~~g~---~~i~Hlt~------r~~n~~~l~~~L~ 80 (272)
T TIGR00676 14 EENLWETVDRLSPLDPDFVSVTYGAGGSTR----DRTVRIVRRIKKETGI---PTVPHLTC------IGATREEIREILR 80 (272)
T ss_pred HHHHHHHHHHHhcCCCCEEEeccCCCCCcH----HHHHHHHHHHHHhcCC---CeeEEeee------cCCCHHHHHHHHH
Confidence 356666677766889999998865443211 112233344442 221 11122222 3467888888887
Q ss_pred HHHHhhCCCcccEEEeccCCC--------CChHHHHHHHHHHHHc-CceeEEEeecCcH---------HHHHHHHHHHHh
Q 020098 153 DSLFRLGLSSVELYQLHWAGI--------WGNEGFIDGLGDAVEQ-GLVKAVGVSNYSE---------KRLRNAYEKLKK 214 (331)
Q Consensus 153 ~sL~~Lg~d~iDl~~lh~p~~--------~~~~~~~~~L~~l~~~-G~i~~iGvs~~~~---------~~l~~~~~~~~~ 214 (331)
.. ..+|++ +++.|-...+ .......+-++.+++. +. -.||+..+.- +.+..+.+- ..
T Consensus 81 ~~-~~~Gi~--nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~-f~ig~a~~Peghp~~~~~~~~~~~L~~K-~~ 155 (272)
T TIGR00676 81 EY-RELGIR--HILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGD-FDIGVAAYPEKHPEAPNLEEDIENLKRK-VD 155 (272)
T ss_pred HH-HHCCCC--EEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCC-eeEEEEeCCCCCCCCCCHHHHHHHHHHH-HH
Confidence 55 788865 4554533111 1122345445555554 43 4688887531 234444332 23
Q ss_pred cCCCeeeeeecccccccCccccchhHHHHHcCCeEEEcccCccccc
Q 020098 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGAL 260 (331)
Q Consensus 215 ~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~L 260 (331)
.|..+.+-|.-|++-. .. .+++.|++.||.+ |+--|++
T Consensus 156 aGA~f~iTQ~~fd~~~---~~-~~~~~~~~~gi~~----PIi~Gi~ 193 (272)
T TIGR00676 156 AGADYAITQLFFDNDD---YY-RFVDRCRAAGIDV----PIIPGIM 193 (272)
T ss_pred cCCCeEeeccccCHHH---HH-HHHHHHHHcCCCC----CEecccC
Confidence 4556888888876622 22 3888999998765 5555554
No 56
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=69.48 E-value=34 Score=30.94 Aligned_cols=114 Identities=18% Similarity=0.108 Sum_probs=63.2
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHH-----------------HHhccCCCCCCcEEEEe
Q 020098 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRF-----------------IKERKQRDPEVEVTVAT 133 (331)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~-----------------l~~~~~~~~R~~~~i~t 133 (331)
..+.++..++.+.+-+.|+.||=|...... -+++-+. |+.... ...-++|+|
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stpfd~~s---------~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~--tgkPvIlST 120 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTPFDEES---------VDFLEELGVPAYKIASGDLTNLPLLEYIAK--TGKPVILST 120 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE-SHHH---------HHHHHHHT-SEEEE-GGGTT-HHHHHHHHT--T-S-EEEE-
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECCCCHHH---------HHHHHHcCCCEEEeccccccCHHHHHHHHH--hCCcEEEEC
Confidence 356789999999999999999987644322 2222111 111111 135677777
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCC--hHH-HHHHHHHHHHcCceeEEEeecCcHHHH
Q 020098 134 KFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG--NEG-FIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (331)
Q Consensus 134 K~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~--~~~-~~~~L~~l~~~G~i~~iGvs~~~~~~l 205 (331)
-. -+-+.|+++++...+.-+ -++.++|....+| .++ =+..+..|++.=- -.||.|.|+....
T Consensus 121 G~------stl~EI~~Av~~~~~~~~---~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g~~ 185 (241)
T PF03102_consen 121 GM------STLEEIERAVEVLREAGN---EDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDGIE 185 (241)
T ss_dssp TT--------HHHHHHHHHHHHHHCT-----EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSSSH
T ss_pred CC------CCHHHHHHHHHHHHhcCC---CCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCCcH
Confidence 66 457777777776644433 5899999877644 332 3556666664422 5589999986433
No 57
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=68.26 E-value=55 Score=32.68 Aligned_cols=150 Identities=16% Similarity=0.113 Sum_probs=86.9
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHH----cCceeEEEee--cCcHHHHHHHHHHHHhc
Q 020098 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVE----QGLVKAVGVS--NYSEKRLRNAYEKLKKR 215 (331)
Q Consensus 142 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~----~G~i~~iGvs--~~~~~~l~~~~~~~~~~ 215 (331)
.+.+.|.+.++. +..+|...+-|+.=..|...+.+.+.+.++.+++ .|.++.|+++ ..+.+++.++.+ .
T Consensus 115 Ls~EEI~~ea~~-~~~~G~~~i~LvsGe~p~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~Lke----a 189 (469)
T PRK09613 115 LTQEEIREEVKA-LEDMGHKRLALVAGEDPPNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLKE----A 189 (469)
T ss_pred CCHHHHHHHHHH-HHHCCCCEEEEEeCCCCCCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHHH----c
Confidence 568888888875 5778988877653344444567777777777776 4667766664 346677766643 3
Q ss_pred CC-Ceeeeeecccc-----cccCc------cccchhHHHHHcCCeEEEcccCccccccCCCCCCCCCCCCCCCccchhHH
Q 020098 216 GI-PLASNQVNYSL-----IYRKP------EENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYL 283 (331)
Q Consensus 216 ~~-~~~~~q~~~n~-----~~~~~------~~~~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~ 283 (331)
|+ ...++|-.||. +++.. ++-..++.+++.||.-+..+.+-| | +++.
T Consensus 190 Gv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L~G--L-------------------ge~~ 248 (469)
T PRK09613 190 GIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVLFG--L-------------------YDYK 248 (469)
T ss_pred CCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEEEc--C-------------------CCCH
Confidence 44 35566666542 11110 112578888999987555433332 1 1122
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHhhhhccc
Q 020098 284 RNLQPLLNRIKELGENYSKTSTQNSPCMSNSLAK 317 (331)
Q Consensus 284 ~~~~~~~~~l~~la~~~g~s~~qval~~~l~~~g 317 (331)
......+-.++.+-++||+.|..+.+-.+.+++|
T Consensus 249 ~E~~~l~~hl~~L~~~~gvgp~tIsvprl~P~~G 282 (469)
T PRK09613 249 FEVLGLLMHAEHLEERFGVGPHTISVPRLRPADG 282 (469)
T ss_pred HHHHHHHHHHHHHHHhhCCCCccccccceecCCC
Confidence 2223333456666666666555555555555555
No 58
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=68.22 E-value=54 Score=29.78 Aligned_cols=50 Identities=22% Similarity=0.165 Sum_probs=30.4
Q ss_pred chhHHHHHcCCeEEEcccCccccccCCCCCCCCCCCCCCCccchhHHhhHHHHHHHHHHHHHhcCC
Q 020098 237 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSK 302 (331)
Q Consensus 237 ~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~ 302 (331)
..++.|++.|+.++...+...+ + ..-.+...+...+.+..+.++|+++|+
T Consensus 103 ~~i~~a~~lG~~~i~~~~~~~~-----~-----------~~~~~~~~~~~~~~l~~l~~~A~~~GV 152 (283)
T PRK13209 103 KAIQLAQDLGIRVIQLAGYDVY-----Y-----------EQANNETRRRFIDGLKESVELASRASV 152 (283)
T ss_pred HHHHHHHHcCCCEEEECCcccc-----c-----------cccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4778899999998875321100 0 001133445566667788888888886
No 59
>PRK06740 histidinol-phosphatase; Validated
Probab=67.83 E-value=68 Score=30.40 Aligned_cols=105 Identities=14% Similarity=0.140 Sum_probs=62.5
Q ss_pred HHHHHHHHhhCCCcccEEEeccCCCC-----C-------------hHHHHHHHHHHHHcCceeEEEee------cCc---
Q 020098 149 AALKDSLFRLGLSSVELYQLHWAGIW-----G-------------NEGFIDGLGDAVEQGLVKAVGVS------NYS--- 201 (331)
Q Consensus 149 ~~v~~sL~~Lg~d~iDl~~lh~p~~~-----~-------------~~~~~~~L~~l~~~G~i~~iGvs------~~~--- 201 (331)
..+++.|.....||+ +.-+|+.+.. . .+...+.+.++.+.|.+..||=- ++.
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIgHpDlik~f~~~~~~ 234 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIAHLDNIKVFNYRLDE 234 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCCCCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHhcCCCcch
Confidence 345556666777877 7888875420 0 12356778888899987776622 111
Q ss_pred ---HHHHHHHHHHHHhcCCCeeeeee-ccc--ccccCccccchhHHHHHcCCeEEEcccCc
Q 020098 202 ---EKRLRNAYEKLKKRGIPLASNQV-NYS--LIYRKPEENGVKAACDELGITLIAYCPIA 256 (331)
Q Consensus 202 ---~~~l~~~~~~~~~~~~~~~~~q~-~~n--~~~~~~~~~~~l~~~~~~gi~v~a~s~l~ 256 (331)
.+.++++++.+...+..+.+|-. .+. .-+.-+.. .+++.|++.|+.++. +.-+
T Consensus 235 ~~~~~~~~~I~~a~~~~g~~lEINt~~~~r~~~~e~yP~~-~il~~~~e~Gv~~tl-gSDA 293 (331)
T PRK06740 235 NEQLSYYKEIARALVETNTATEINAGLYYRYPVREMCPSP-LFLQVLAKHEVPITL-SSDA 293 (331)
T ss_pred hhhHHHHHHHHHHHHHcCCEEEEECccccCCCCCCCCcCH-HHHHHHHHCCCeEEE-eeCC
Confidence 24677777777777776766653 121 11111111 488999999998643 4443
No 60
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=67.41 E-value=62 Score=30.96 Aligned_cols=91 Identities=11% Similarity=0.009 Sum_probs=61.2
Q ss_pred EEeccCCC------------CChHHHHHHHHHHHHcC--c--eeEEEee--cCcHHHHHHHHHHHHhcCCCeeeeeeccc
Q 020098 166 YQLHWAGI------------WGNEGFIDGLGDAVEQG--L--VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (331)
Q Consensus 166 ~~lh~p~~------------~~~~~~~~~L~~l~~~G--~--i~~iGvs--~~~~~~l~~~~~~~~~~~~~~~~~q~~~n 227 (331)
+-+|.++. ++.+++++++.+..+.+ + ++++=+. |.+.+.++++.+.+... +..++-++||
T Consensus 211 iSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l--~~~vnlIPyn 288 (349)
T PRK14463 211 VSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDI--PSKVNLIPFN 288 (349)
T ss_pred EeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcc--CceEEEEecC
Confidence 66888765 23577888888777654 2 3344444 55678888888776643 4567779999
Q ss_pred ccccCccc-------cchhHHHHHcCCeEEEcccCccc
Q 020098 228 LIYRKPEE-------NGVKAACDELGITLIAYCPIAQG 258 (331)
Q Consensus 228 ~~~~~~~~-------~~~l~~~~~~gi~v~a~s~l~~G 258 (331)
++...... ..+.+..+++||.+......+.-
T Consensus 289 ~~~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~d 326 (349)
T PRK14463 289 EHEGCDFRSPTQEAIDRFHKYLLDKHVTVITRSSRGSD 326 (349)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcc
Confidence 87643221 13566778899999998877643
No 61
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=67.10 E-value=1.1e+02 Score=28.51 Aligned_cols=186 Identities=12% Similarity=0.108 Sum_probs=91.4
Q ss_pred cceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHH-CCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCc
Q 020098 50 KLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLD-NGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVE 128 (331)
Q Consensus 50 ~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~-~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~ 128 (331)
.|.||+|.-+. +.. ...+.++..+.+...++ .|++.||---.|+.-.. -.+-..+-++|+...... ..
T Consensus 71 iiS~GG~~g~~---~~~---~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d---~~~~~~~~~al~~Lq~~~--p~ 139 (294)
T cd06543 71 IVSFGGASGTP---LAT---SCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTD---TAAIDRRAQALALLQKEY--PD 139 (294)
T ss_pred EEEecCCCCCc---ccc---CcccHHHHHHHHHHHHHHhCCCeEEEeccCCcccc---chhHHHHHHHHHHHHHHC--CC
Confidence 34677775322 111 22344555555555554 49999998666654211 012366777777765432 34
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHHHHHhhC--CCcccEEEeccCCCC---C-hHHHHHHHHHHHHcCceeEEEeecCcH
Q 020098 129 VTVATKFAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGIW---G-NEGFIDGLGDAVEQGLVKAVGVSNYSE 202 (331)
Q Consensus 129 ~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg--~d~iDl~~lh~p~~~---~-~~~~~~~L~~l~~~G~i~~iGvs~~~~ 202 (331)
+.|+--+...+...+.+.+ .+-+..+.-| +|+|.++-+..-... . -+.+..+.+.++.+=+--+=+ ++.
T Consensus 140 l~vs~Tlp~~p~gl~~~g~--~~l~~a~~~Gv~~d~VNiMtmDyg~~~~~~~mg~~a~~aa~~~~~ql~~~~~~---~s~ 214 (294)
T cd06543 140 LKISFTLPVLPTGLTPDGL--NVLEAAAANGVDLDTVNIMTMDYGSSAGSQDMGAAAISAAESLHDQLKDLYPK---LSD 214 (294)
T ss_pred cEEEEecCCCCCCCChhHH--HHHHHHHHcCCCcceeeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHccC---CCH
Confidence 5555555433444544432 2344444555 456666666543221 1 234445544444431111111 222
Q ss_pred HHHHHHHHHHHhcCCCeeeeeeccc--ccccCccccchhHHHHHcCCeEEEcccCccc
Q 020098 203 KRLRNAYEKLKKRGIPLASNQVNYS--LIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (331)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~q~~~n--~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G 258 (331)
.++- ...++.|.+-+.... ++...... .+.++++++||+.+.+-.+.+.
T Consensus 215 ~~~~------~~ig~TpMiG~nD~~~e~ft~~da~-~~~~fA~~~~l~~~s~Ws~~RD 265 (294)
T cd06543 215 AELW------AMIGVTPMIGVNDVGSEVFTLADAQ-TLVDFAKEKGLGRLSMWSLNRD 265 (294)
T ss_pred HHHH------HHccccccccccCCCCceeeHHHHH-HHHHHHHhCCCCeEeeeeccCC
Confidence 2221 112233443332221 22222222 4999999999999999888764
No 62
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=66.76 E-value=87 Score=28.27 Aligned_cols=89 Identities=16% Similarity=0.101 Sum_probs=47.2
Q ss_pred HHHHhhCCCcccEEEeccCCCCC--hHHHHHHHHHHHHcCceeEEEeecC-cHHHHHHHHHHHHhcCCCeeeeeeccccc
Q 020098 153 DSLFRLGLSSVELYQLHWAGIWG--NEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLI 229 (331)
Q Consensus 153 ~sL~~Lg~d~iDl~~lh~p~~~~--~~~~~~~L~~l~~~G~i~~iGvs~~-~~~~l~~~~~~~~~~~~~~~~~q~~~n~~ 229 (331)
+-|+.+| +|.+.+|..+... ..--|+.+.++++.-.+.-|...+. +++.+.++++. . ..+.+.+---+.
T Consensus 162 ~~l~~~G---~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~---g--~~dgv~~g~a~~ 233 (254)
T TIGR00735 162 KEVEKLG---AGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTK---G--KADAALAASVFH 233 (254)
T ss_pred HHHHHcC---CCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHc---C--CcceeeEhHHHh
Confidence 3345556 4666666654411 1222556666666656666666654 67788777553 2 133322211111
Q ss_pred ccCccccchhHHHHHcCCeE
Q 020098 230 YRKPEENGVKAACDELGITL 249 (331)
Q Consensus 230 ~~~~~~~~~l~~~~~~gi~v 249 (331)
+....-.++.+.|+++||.+
T Consensus 234 ~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 234 YREITIGEVKEYLAERGIPV 253 (254)
T ss_pred CCCCCHHHHHHHHHHCCCcc
Confidence 11111125889999999864
No 63
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=66.75 E-value=1e+02 Score=28.05 Aligned_cols=62 Identities=8% Similarity=0.143 Sum_probs=39.7
Q ss_pred chhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCC
Q 020098 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFA 136 (331)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~ 136 (331)
+.++.+...+.++..++.|++-|-..-..|-+.+....+=++++..+.+... +++-|..-++
T Consensus 13 g~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~-----~~~~vi~gv~ 74 (281)
T cd00408 13 GEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVA-----GRVPVIAGVG 74 (281)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhC-----CCCeEEEecC
Confidence 5688899999999999999998876555554433223333555666666543 3444545443
No 64
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=66.66 E-value=34 Score=32.27 Aligned_cols=95 Identities=15% Similarity=0.121 Sum_probs=57.0
Q ss_pred HHHhhCCCcccEEEecc-CCC--CChHHHHHHHHHHHHcCcee-EEEeecC---cHHHHHHHHHHHHhcCCCeeeeeecc
Q 020098 154 SLFRLGLSSVELYQLHW-AGI--WGNEGFIDGLGDAVEQGLVK-AVGVSNY---SEKRLRNAYEKLKKRGIPLASNQVNY 226 (331)
Q Consensus 154 sL~~Lg~d~iDl~~lh~-p~~--~~~~~~~~~L~~l~~~G~i~-~iGvs~~---~~~~l~~~~~~~~~~~~~~~~~q~~~ 226 (331)
.-+.+|.|+||+-+.-. |+. ...++....++...+.=.+- .|..|.. +++.++..++.++.. ++-++-...
T Consensus 84 q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~--~pLInSat~ 161 (319)
T PRK04452 84 CVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGE--RCLLGSAEE 161 (319)
T ss_pred HHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCC--CCEEEECCH
Confidence 34578888888775433 432 23444555555554443333 3666644 688899987765421 344443332
Q ss_pred cccccCccccchhHHHHHcCCeEEEcccCc
Q 020098 227 SLIYRKPEENGVKAACDELGITLIAYCPIA 256 (331)
Q Consensus 227 n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~ 256 (331)
. ..+ .+.+.|+++|..|++.++..
T Consensus 162 e-----n~~-~i~~lA~~y~~~Vva~s~~D 185 (319)
T PRK04452 162 D-----NYK-KIAAAAMAYGHAVIAWSPLD 185 (319)
T ss_pred H-----HHH-HHHHHHHHhCCeEEEEcHHH
Confidence 1 122 49999999999999988554
No 65
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=65.41 E-value=85 Score=29.59 Aligned_cols=89 Identities=19% Similarity=0.173 Sum_probs=63.7
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecCcHHHH
Q 020098 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (331)
Q Consensus 126 R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l 205 (331)
++.+.++.|....++ ...+.+.+++..+++|. ++.+ ..|...+.....+.++.+..+| +..|-++..+.+.+
T Consensus 23 ~~~i~~v~k~~~~pf---~~~~~~Gi~~aa~~~G~---~v~~-~~~~~~d~~~q~~~i~~li~~~-vdgIiv~~~d~~al 94 (336)
T PRK15408 23 AERIAFIPKLVGVGF---FTSGGNGAKEAGKELGV---DVTY-DGPTEPSVSGQVQLINNFVNQG-YNAIIVSAVSPDGL 94 (336)
T ss_pred CcEEEEEECCCCCHH---HHHHHHHHHHHHHHhCC---EEEE-ECCCCCCHHHHHHHHHHHHHcC-CCEEEEecCCHHHH
Confidence 578889999753222 56788889999999983 4543 3344345566678899999876 78888888887777
Q ss_pred HHHHHHHHhcCCCeeee
Q 020098 206 RNAYEKLKKRGIPLASN 222 (331)
Q Consensus 206 ~~~~~~~~~~~~~~~~~ 222 (331)
...++.+...++|+.++
T Consensus 95 ~~~l~~a~~~gIpVV~~ 111 (336)
T PRK15408 95 CPALKRAMQRGVKVLTW 111 (336)
T ss_pred HHHHHHHHHCCCeEEEe
Confidence 77777777777765544
No 66
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=65.35 E-value=27 Score=30.38 Aligned_cols=150 Identities=12% Similarity=-0.004 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 020098 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (331)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v 151 (331)
.+++++.++++.+++.|++..|.- +..+..++...++.-.++++++.-=. ...+.++..+
T Consensus 9 ~d~~~~~~~v~~~l~~g~~~~~i~--------------~~~l~p~m~~iG~~w~~gei~va~~~------~a~~~~~~~l 68 (197)
T TIGR02370 9 GEEDDVVEGAQKALDAGIDPIELI--------------EKGLMAGMGVVGKLFEDGELFLPHVM------MSADAMLAGI 68 (197)
T ss_pred cCHHHHHHHHHHHHHcCCCHHHHH--------------HHHHHHHHHHHHHHHcCCCccHHHHH------HHHHHHHHHH
Confidence 456899999999999999877653 44555555554421113444432111 2344455555
Q ss_pred HHHHHhhCCC----cccEEEecc-CCCCChHHHHHHHHHHHHcCc-eeEEEeecCcHHHHHHHHHHHHhcCCCeeeeeec
Q 020098 152 KDSLFRLGLS----SVELYQLHW-AGIWGNEGFIDGLGDAVEQGL-VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVN 225 (331)
Q Consensus 152 ~~sL~~Lg~d----~iDl~~lh~-p~~~~~~~~~~~L~~l~~~G~-i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~ 225 (331)
+.....+..+ .---+++-. +...-.-+..-.-.-|...|. |.++|. +-+.+.+.+.++. ..|+++.+.
T Consensus 69 ~~l~~~~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~-~vp~e~~v~~~~~-----~~pd~v~lS 142 (197)
T TIGR02370 69 KVLTPEMEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGR-DVPIDTVVEKVKK-----EKPLMLTGS 142 (197)
T ss_pred HHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCC-CCCHHHHHHHHHH-----cCCCEEEEc
Confidence 4444444321 111122222 211112222333334555665 566775 4455666666444 466666666
Q ss_pred ccccccCccccchhHHHHHcCC
Q 020098 226 YSLIYRKPEENGVKAACDELGI 247 (331)
Q Consensus 226 ~n~~~~~~~~~~~l~~~~~~gi 247 (331)
+........-..+++.+++.+.
T Consensus 143 ~~~~~~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 143 ALMTTTMYGQKDINDKLKEEGY 164 (197)
T ss_pred cccccCHHHHHHHHHHHHHcCC
Confidence 5544433222357788888754
No 67
>PRK07328 histidinol-phosphatase; Provisional
Probab=65.26 E-value=1.1e+02 Score=27.84 Aligned_cols=172 Identities=16% Similarity=0.216 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHCCCCeEECCcCcCCC------CCCCCCchHHHHHHHHH---hccCCCCCCcEEEEecCCCCCCCCCHHH
Q 020098 76 AAKAAFDTSLDNGITFFDTAEVYGSR------ASFGAINSETLLGRFIK---ERKQRDPEVEVTVATKFAALPWRLGRQS 146 (331)
Q Consensus 76 ~~~~~l~~A~~~Gvn~~Dta~~Yg~g------~~~~~~~sE~~iG~~l~---~~~~~~~R~~~~i~tK~~~~~~~~~~~~ 146 (331)
...+.+.+|.+.|+..+=.+++.... ....-.-...-+-+.++ ...+..++=+|++..-++..+ .
T Consensus 19 ~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y~~i~Il~GiE~~~~~------~ 92 (269)
T PRK07328 19 TPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARFPDLYVRLGIEADYHP------G 92 (269)
T ss_pred CHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHcCCCeEEEEEEecccC------C
Confidence 46678999999999987666653220 00000000111222222 221111122445555544321 2
Q ss_pred HHHHHHHHHHhhCCCcccEEEeccCCCC--------------ChHHHH----HHHHHHHHcCceeEEEeecC--------
Q 020098 147 VLAALKDSLFRLGLSSVELYQLHWAGIW--------------GNEGFI----DGLGDAVEQGLVKAVGVSNY-------- 200 (331)
Q Consensus 147 i~~~v~~sL~~Lg~d~iDl~~lh~p~~~--------------~~~~~~----~~L~~l~~~G~i~~iGvs~~-------- 200 (331)
....+++.|++...||+ +..+|+.+.. ..++++ +.+.++.+.|.+.-||=-+.
T Consensus 93 ~~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~i~~~~~~~ 171 (269)
T PRK07328 93 TEEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHPDLIKKFGHRP 171 (269)
T ss_pred cHHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHHcCCCC
Confidence 34555666777777777 7888985421 112233 35777788888766663221
Q ss_pred ---cHHHHHHHHHHHHhcCCCeeeeeeccc--ccccCccccchhHHHHHcCCeEEEcccCc
Q 020098 201 ---SEKRLRNAYEKLKKRGIPLASNQVNYS--LIYRKPEENGVKAACDELGITLIAYCPIA 256 (331)
Q Consensus 201 ---~~~~l~~~~~~~~~~~~~~~~~q~~~n--~~~~~~~~~~~l~~~~~~gi~v~a~s~l~ 256 (331)
..+.++++++.+...+..+.+|-..+. .-+.-+.. .+++.|++.|+.+ +.+.-+
T Consensus 172 ~~~~~~~~~~il~~~~~~g~~lEiNt~~~r~~~~~~yp~~-~il~~~~~~g~~i-tigSDA 230 (269)
T PRK07328 172 REDLTELYEEALDVIAAAGLALEVNTAGLRKPVGEIYPSP-ALLRACRERGIPV-VLGSDA 230 (269)
T ss_pred chhHHHHHHHHHHHHHHcCCEEEEEchhhcCCCCCCCCCH-HHHHHHHHcCCCE-EEeCCC
Confidence 124456777777777766666543221 11111111 4899999999884 434433
No 68
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=65.26 E-value=1e+02 Score=29.82 Aligned_cols=100 Identities=16% Similarity=0.063 Sum_probs=68.0
Q ss_pred CCCcccEEEeccCCC------------CChHHHHHHHHHHH-HcCc---eeEEEee--cCcHHHHHHHHHHHHhcC-CCe
Q 020098 159 GLSSVELYQLHWAGI------------WGNEGFIDGLGDAV-EQGL---VKAVGVS--NYSEKRLRNAYEKLKKRG-IPL 219 (331)
Q Consensus 159 g~d~iDl~~lh~p~~------------~~~~~~~~~L~~l~-~~G~---i~~iGvs--~~~~~~l~~~~~~~~~~~-~~~ 219 (331)
+.++-=.+-||.++. ++.+++++++.++. +.|+ |.++=+. |.+.+.++++.+.++... .+.
T Consensus 235 ~l~~~LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~ 314 (373)
T PRK14459 235 GLPVTLAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWV 314 (373)
T ss_pred cCCeEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCe
Confidence 334333477898876 34788999988887 4464 4555555 456777777777665432 256
Q ss_pred eeeeecccccccCcccc-------chhHHHHHcCCeEEEcccCccc
Q 020098 220 ASNQVNYSLIYRKPEEN-------GVKAACDELGITLIAYCPIAQG 258 (331)
Q Consensus 220 ~~~q~~~n~~~~~~~~~-------~~l~~~~~~gi~v~a~s~l~~G 258 (331)
.++-++||++.....+. .+.+..+++||.+......+.-
T Consensus 315 ~VNLIpyNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~d 360 (373)
T PRK14459 315 HVNLIPLNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQE 360 (373)
T ss_pred EEEEEccCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCcC
Confidence 88999999976533221 3677788999999998877754
No 69
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=65.07 E-value=1e+02 Score=27.51 Aligned_cols=131 Identities=11% Similarity=0.080 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 020098 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (331)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v 151 (331)
.+.++..++++...+.||..|+....-.....+--...++.+.+.-+..+ ...+...++.+ . +.+
T Consensus 16 ~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~----~~~~~~l~~~~-------~----~~i 80 (265)
T cd03174 16 FSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVP----NVKLQALVRNR-------E----KGI 80 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccC----CcEEEEEccCc-------h----hhH
Confidence 45689999999999999999997533222000000011344444333221 23343333331 2 222
Q ss_pred HHHHHhhCCCcccEEEeccCC-------C---CChHHHHHHHHHHHHcCceeEEEe---ec--CcHHHHHHHHHHHHhcC
Q 020098 152 KDSLFRLGLSSVELYQLHWAG-------I---WGNEGFIDGLGDAVEQGLVKAVGV---SN--YSEKRLRNAYEKLKKRG 216 (331)
Q Consensus 152 ~~sL~~Lg~d~iDl~~lh~p~-------~---~~~~~~~~~L~~l~~~G~i~~iGv---s~--~~~~~l~~~~~~~~~~~ 216 (331)
+... ..|.+.+-++.--++. . ...+.+.+.++.+++.|.--.+.+ +. ++.+.+.++++.+...+
T Consensus 81 ~~a~-~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g 159 (265)
T cd03174 81 ERAL-EAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAG 159 (265)
T ss_pred HHHH-hCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcC
Confidence 2222 2355554444421110 0 124566777777888887544443 34 56666777666666555
Q ss_pred CC
Q 020098 217 IP 218 (331)
Q Consensus 217 ~~ 218 (331)
..
T Consensus 160 ~~ 161 (265)
T cd03174 160 AD 161 (265)
T ss_pred CC
Confidence 33
No 70
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=65.00 E-value=41 Score=28.18 Aligned_cols=92 Identities=10% Similarity=0.073 Sum_probs=56.9
Q ss_pred EEeccCCCCChHHHHHHHHHHHHcCceeEEEeecCcHHHHHHHHHHHHhcCCCeeeeeeccccccc--CccccchhHHHH
Q 020098 166 YQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYR--KPEENGVKAACD 243 (331)
Q Consensus 166 ~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~--~~~~~~~l~~~~ 243 (331)
+++..|.....+++++..-+=-++.-|++|=|.+-+.+....+++..+.. .+..++-..+..-.. +..+.++-+..+
T Consensus 2 ~yf~~pG~eNT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~-lkvVvVthh~Gf~e~g~~e~~~E~~~~L~ 80 (186)
T COG1751 2 VYFEKPGKENTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGD-LKVVVVTHHAGFEEKGTQEMDEEVRKELK 80 (186)
T ss_pred ccccCCcccchHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccC-ceEEEEEeecccccCCceecCHHHHHHHH
Confidence 45666666667777777666666777888888877777776776654422 334333333322222 111235888899
Q ss_pred HcCCeEEEcccCccc
Q 020098 244 ELGITLIAYCPIAQG 258 (331)
Q Consensus 244 ~~gi~v~a~s~l~~G 258 (331)
++|..|+.-|-..+|
T Consensus 81 erGa~v~~~sHalSg 95 (186)
T COG1751 81 ERGAKVLTQSHALSG 95 (186)
T ss_pred HcCceeeeehhhhhc
Confidence 999999876655444
No 71
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=63.81 E-value=1.1e+02 Score=30.21 Aligned_cols=104 Identities=11% Similarity=0.051 Sum_probs=55.7
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCC-----cccEEEeccCCCCC-----hHHH
Q 020098 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS-----SVELYQLHWAGIWG-----NEGF 179 (331)
Q Consensus 110 E~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d-----~iDl~~lh~p~~~~-----~~~~ 179 (331)
|+-+-++|+...+..+.+-++|.|-+- .+-+-..++...+++.-+ .+.++.++.|.... .+.+
T Consensus 70 ~~~L~~ai~~~~~~~~p~~I~v~ttC~-------~~iiGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~gs~~~G~~~a 142 (435)
T cd01974 70 QNNLIDGLKNAYAVYKPDMIAVSTTCM-------AEVIGDDLNAFIKNAKNKGSIPADFPVPFANTPSFVGSHITGYDNM 142 (435)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCch-------HhhhhccHHHHHHHHHHhccCCCCCeEEEecCCCCccCHHHHHHHH
Confidence 888888888766543356677777763 233333333333333211 37889998887522 2334
Q ss_pred HHHHHH-HH-------HcCceeEEEeecCcHHHHHHHHHHHHhcCCCee
Q 020098 180 IDGLGD-AV-------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (331)
Q Consensus 180 ~~~L~~-l~-------~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~ 220 (331)
+++|-+ +. +.++|.-||-.+...+.+.++.+..+..|+.+.
T Consensus 143 ~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~ 191 (435)
T cd01974 143 VKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYT 191 (435)
T ss_pred HHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEE
Confidence 444432 22 234566665323222235566666777776654
No 72
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=62.75 E-value=26 Score=30.87 Aligned_cols=66 Identities=8% Similarity=0.007 Sum_probs=43.8
Q ss_pred HHHhhCCCcccEEEec-cCCCCChHHHHHHHHHHHHcCceeEEEee-cCcHHHHHHHHHHHHhcCCCeeeeeecc
Q 020098 154 SLFRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (331)
Q Consensus 154 sL~~Lg~d~iDl~~lh-~p~~~~~~~~~~~L~~l~~~G~i~~iGvs-~~~~~~l~~~~~~~~~~~~~~~~~q~~~ 226 (331)
.+..+|.||+=+++.. +|...+.+.+-+....+ .+.++.+||. |-+++.+.++++. ..++++|++-
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~V~~~~a~~i~~~~--~~~~~~VgVf~~~~~~~i~~~~~~-----~~~d~vQLHG 83 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRHQTITQIKKLASAV--PNHIDKVCVVVNPDLTTIEHILSN-----TSINTIQLHG 83 (207)
T ss_pred HHHHcCCCEEEEecCCCCcccCCHHHHHHHHHhC--CCCCCEEEEEeCCCHHHHHHHHHh-----CCCCEEEECC
Confidence 4456999999987543 33334444433333322 2557889996 6688888888665 6789999976
No 73
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=62.66 E-value=1e+02 Score=29.89 Aligned_cols=95 Identities=15% Similarity=0.147 Sum_probs=59.9
Q ss_pred HhhCCCcccEEEeccCCC------CChHHHHHHHHHHHHc-CceeEEEee---cCcHHHHHHHHHHHHhcCCCeeeeeec
Q 020098 156 FRLGLSSVELYQLHWAGI------WGNEGFIDGLGDAVEQ-GLVKAVGVS---NYSEKRLRNAYEKLKKRGIPLASNQVN 225 (331)
Q Consensus 156 ~~Lg~d~iDl~~lh~p~~------~~~~~~~~~L~~l~~~-G~i~~iGvs---~~~~~~l~~~~~~~~~~~~~~~~~q~~ 225 (331)
+.+| +|++.||.... .+.++..+..++..+. +.---|+=| ..+++.++..++.+.. -++-++-..
T Consensus 150 ~~~~---aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~G--~kpLL~SAt 224 (389)
T TIGR00381 150 KEFG---ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAEG--ERCLLASAN 224 (389)
T ss_pred HHhC---CCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhCC--CCcEEEecC
Confidence 4555 67888876432 2345677777776444 333445544 5578999999776542 145444333
Q ss_pred ccccccCccccchhHHHHHcCCeEEEcccCccccc
Q 020098 226 YSLIYRKPEENGVKAACDELGITLIAYCPIAQGAL 260 (331)
Q Consensus 226 ~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~L 260 (331)
... ..+ .+.+.|+++|..|+++++..-|.+
T Consensus 225 ~e~----Ny~-~ia~lAk~yg~~Vvv~s~~Din~a 254 (389)
T TIGR00381 225 LDL----DYE-KIANAAKKYGHVVLSWTIMDINMQ 254 (389)
T ss_pred chh----hHH-HHHHHHHHhCCeEEEEcCCcHHHH
Confidence 321 122 499999999999999998886643
No 74
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=62.60 E-value=59 Score=29.28 Aligned_cols=53 Identities=11% Similarity=-0.001 Sum_probs=44.4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCC--CChHHHHHHHHHHHHcCce
Q 020098 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLV 192 (331)
Q Consensus 140 ~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~--~~~~~~~~~L~~l~~~G~i 192 (331)
..++.+.-.+-.+-+.+.+++++|-+=.|-.++. .+.-+++++-|.|+++|-+
T Consensus 78 Gc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~ 132 (262)
T COG2022 78 GCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFV 132 (262)
T ss_pred ccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCE
Confidence 4677887777778888899999999988877776 4578999999999999965
No 75
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=62.56 E-value=1.8e+02 Score=29.41 Aligned_cols=105 Identities=14% Similarity=0.115 Sum_probs=61.3
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCC-----hHHHHHHHH
Q 020098 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (331)
Q Consensus 110 E~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~-----~~~~~~~L~ 184 (331)
|+-+-++|.....+.+.+-++|.|-+- .+-|-..++...+.++.+ ++++.++.|.... .+.++..|-
T Consensus 70 ~ekL~~aI~~~~~~~~P~~I~V~sTC~-------seiIGdDi~~v~~~~~~~-~~Vi~v~t~gf~~~~~~G~~~al~~lv 141 (519)
T PRK02910 70 AELLKDTLRRADERFQPDLIVVGPSCT-------AELLQEDLGGLAKHAGLP-IPVLPLELNAYRVKENWAADETFYQLV 141 (519)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcH-------HHHhccCHHHHHHHhCCC-CCEEEEecCCcccccchHHHHHHHHHH
Confidence 667777777665433245556666652 455555555555666653 6799999887622 222332222
Q ss_pred -HHH-----------HcCceeEEEeecC---cHHHHHHHHHHHHhcCCCeeee
Q 020098 185 -DAV-----------EQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPLASN 222 (331)
Q Consensus 185 -~l~-----------~~G~i~~iGvs~~---~~~~l~~~~~~~~~~~~~~~~~ 222 (331)
.+. +.++|.-||.++. .+..+.++.+.++..|+.+.++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v 194 (519)
T PRK02910 142 RALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVV 194 (519)
T ss_pred HHHhhhcccccccCCCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEE
Confidence 121 2356888998652 4566777777777777665443
No 76
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=62.10 E-value=39 Score=33.28 Aligned_cols=106 Identities=10% Similarity=-0.021 Sum_probs=71.5
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHH----------HHHHHHHHhhCCCcccEEEeccCCCCChHHH
Q 020098 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL----------AALKDSLFRLGLSSVELYQLHWAGIWGNEGF 179 (331)
Q Consensus 110 E~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~----------~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~ 179 (331)
|.++.-+-+....+- +.+++|++-+|.+.... +-.+. -.-.+.-+||.+.|+|.. ...++|.
T Consensus 151 eT~~~~~r~h~~gdL-~Gk~~lTaGLGGMgGAQ-plA~~ma~~v~i~vevd~srI~~Rl~t~y~d~~------a~~ldeA 222 (561)
T COG2987 151 ETFAEAGRQHFGGDL-KGKWVLTAGLGGMGGAQ-PLAATMAGAVCIAVEVDESRIDKRLRTGYLDEI------AETLDEA 222 (561)
T ss_pred HHHHHHHHHhcCCCc-cceEEEecCCCcccccc-hHHHHhcCceEEEEEeCHHHHHHHHhcchhhhh------cCCHHHH
Confidence 555555555554332 68999999998643221 11111 112334467888999832 1468999
Q ss_pred HHHHHHHHHcCceeEEEeecCcHHHHHHHHHHHHhcCCCeee--eeeccc
Q 020098 180 IDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS--NQVNYS 227 (331)
Q Consensus 180 ~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~--~q~~~n 227 (331)
++..++..++|+-..||+-+.-.+.+.++++. ++.|++ -|+..|
T Consensus 223 l~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r----~~~pD~vtDQTsaH 268 (561)
T COG2987 223 LALAEEATAAGEPISIGLLGNAAEILPELLRR----GIRPDLVTDQTSAH 268 (561)
T ss_pred HHHHHHHHhcCCceEEEEeccHHHHHHHHHHc----CCCCceeccccccc
Confidence 99999999999999999999988888888553 456655 466554
No 77
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=62.00 E-value=79 Score=30.22 Aligned_cols=92 Identities=17% Similarity=0.163 Sum_probs=64.3
Q ss_pred EEEeccCCC------------CChHHHHHHHHHHHHcCceeEEEee-------cCcHHHHHHHHHHHHhcCCCeeeeeec
Q 020098 165 LYQLHWAGI------------WGNEGFIDGLGDAVEQGLVKAVGVS-------NYSEKRLRNAYEKLKKRGIPLASNQVN 225 (331)
Q Consensus 165 l~~lh~p~~------------~~~~~~~~~L~~l~~~G~i~~iGvs-------~~~~~~l~~~~~~~~~~~~~~~~~q~~ 225 (331)
.+.||.|+. ++.++++++.+...+... +.|-+- |.+.++..++++.++ +++..++-++
T Consensus 215 AiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~--~~~~~VNLIP 291 (349)
T COG0820 215 AISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLK--GIPCKVNLIP 291 (349)
T ss_pred EEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhc--CCCceEEEee
Confidence 377899875 457888888888886654 434332 556777777766643 3456899999
Q ss_pred ccccccCcccc-------chhHHHHHcCCeEEEcccCcccc
Q 020098 226 YSLIYRKPEEN-------GVKAACDELGITLIAYCPIAQGA 259 (331)
Q Consensus 226 ~n~~~~~~~~~-------~~l~~~~~~gi~v~a~s~l~~G~ 259 (331)
||+......++ ...+..+++||.+.....-+..+
T Consensus 292 ~Np~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~DI 332 (349)
T COG0820 292 YNPVPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRGDDI 332 (349)
T ss_pred cCCCCCCCccCCcHHHHHHHHHHHHhCCeeEEecccccccc
Confidence 99998766332 35666677889999887776544
No 78
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=61.46 E-value=64 Score=32.39 Aligned_cols=77 Identities=16% Similarity=0.178 Sum_probs=37.4
Q ss_pred ChHHHHHHHHHHHHcCceeEEEeec----CcHHHHHHHHHHHHhcC-CCeee-eeecccccccCccccchhHHHHHcCCe
Q 020098 175 GNEGFIDGLGDAVEQGLVKAVGVSN----YSEKRLRNAYEKLKKRG-IPLAS-NQVNYSLIYRKPEENGVKAACDELGIT 248 (331)
Q Consensus 175 ~~~~~~~~L~~l~~~G~i~~iGvs~----~~~~~l~~~~~~~~~~~-~~~~~-~q~~~n~~~~~~~~~~~l~~~~~~gi~ 248 (331)
+.+.+++.++.++++..++.+-+.+ .+.+.+.++++.....+ .++.. .+...+.+.+.. ++++.+++.|+.
T Consensus 223 s~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~---ell~~l~~aG~~ 299 (497)
T TIGR02026 223 DPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDA---DILHLYRRAGLV 299 (497)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCH---HHHHHHHHhCCc
Confidence 3566777777776654456555542 23344555544433332 22211 233333332222 367777777765
Q ss_pred EEEccc
Q 020098 249 LIAYCP 254 (331)
Q Consensus 249 v~a~s~ 254 (331)
-+..+.
T Consensus 300 ~v~iGi 305 (497)
T TIGR02026 300 HISLGT 305 (497)
T ss_pred EEEEcc
Confidence 554433
No 79
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=61.05 E-value=1.5e+02 Score=27.95 Aligned_cols=129 Identities=11% Similarity=0.070 Sum_probs=70.1
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHH--
Q 020098 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL-- 148 (331)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~-- 148 (331)
..+.++..+.++.+.+.|++.|-.......... .+.+-+.++...+.. -++ ++ +.+++..+.
T Consensus 71 ~ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~------~~~~~~li~~Ik~~~--~~i----~~----~~~s~~ei~~~ 134 (340)
T TIGR03699 71 VLSVEEILQKIEELVAYGGTQILLQGGVNPDLG------LDYYEDLFRAIKARF--PHI----HI----HSFSPVEIVYI 134 (340)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCC------HHHHHHHHHHHHHHC--CCc----CC----CCCCHHHHHHH
Confidence 356788999999999999987765432221111 333444444332100 011 11 113333221
Q ss_pred --------HHHHHHHHhhCCCcccEE--Eecc--------CCCCChHHHHHHHHHHHHcCce-e---EEEeecCcHHHHH
Q 020098 149 --------AALKDSLFRLGLSSVELY--QLHW--------AGIWGNEGFIDGLGDAVEQGLV-K---AVGVSNYSEKRLR 206 (331)
Q Consensus 149 --------~~v~~sL~~Lg~d~iDl~--~lh~--------p~~~~~~~~~~~L~~l~~~G~i-~---~iGvs~~~~~~l~ 206 (331)
+..-+.|++.|+++++.. ...+ |.....++.++.++.+++.|.- . -+|+ +.+.+++.
T Consensus 135 ~~~~g~~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGl-gEt~ed~~ 213 (340)
T TIGR03699 135 AKKEGLSLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGH-VETLEDRI 213 (340)
T ss_pred hccCCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeC-CCCHHHHH
Confidence 344455667788877632 1110 1113567889999999999852 2 3454 56666666
Q ss_pred HHHHHHHhcC
Q 020098 207 NAYEKLKKRG 216 (331)
Q Consensus 207 ~~~~~~~~~~ 216 (331)
+.+..++..+
T Consensus 214 ~~l~~l~~l~ 223 (340)
T TIGR03699 214 EHLERIRELQ 223 (340)
T ss_pred HHHHHHHHhc
Confidence 6666555444
No 80
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=60.72 E-value=66 Score=28.45 Aligned_cols=102 Identities=15% Similarity=0.164 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEEeccCCC-CChHHHHHHHHHHHHcCceeEEEeecCcHHHHHHHHHHHHhcCCCee
Q 020098 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (331)
Q Consensus 142 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~-~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~ 220 (331)
++.+. +..+-+.|.++|+++|++- .|.. ....+.++.+.+.... .+..+++....+.++..++.+...+....
T Consensus 11 ~~~~~-k~~i~~~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~i 84 (237)
T PF00682_consen 11 FSTEE-KLEIAKALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDII 84 (237)
T ss_dssp --HHH-HHHHHHHHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSEE
T ss_pred cCHHH-HHHHHHHHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCEE
Confidence 44444 4455556999999998887 3321 1234445555555555 44456666777788887665566665554
Q ss_pred eeeecccccccCc-----------cccchhHHHHHcCCeE
Q 020098 221 SNQVNYSLIYRKP-----------EENGVKAACDELGITL 249 (331)
Q Consensus 221 ~~q~~~n~~~~~~-----------~~~~~l~~~~~~gi~v 249 (331)
.+-...|...... .-...++++++.|+.+
T Consensus 85 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 85 RIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 4444454421110 0014789999999998
No 81
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=60.72 E-value=1.5e+02 Score=27.80 Aligned_cols=105 Identities=14% Similarity=0.105 Sum_probs=62.6
Q ss_pred CceeEEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccCccc--cchhHHHHHcCCeEEEcccCccccccCCCCCC
Q 020098 190 GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE--NGVKAACDELGITLIAYCPIAQGALTGKYTPQ 267 (331)
Q Consensus 190 G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~--~~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~~ 267 (331)
.++..+-=.+++.+.+.++.+.+........+ ..+|-++..... ..+.+++++.++-++.-+.-.+.
T Consensus 156 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~v--~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~SsN--------- 224 (298)
T PRK01045 156 DKLALVTQTTLSVDDTAEIIAALKERFPEIQG--PPKDDICYATQNRQEAVKELAPQADLVIVVGSKNSSN--------- 224 (298)
T ss_pred CcEEEEEcCCCcHHHHHHHHHHHHHhCcCccc--CCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCCcc---------
Confidence 45555555667778888887776542211111 112222221111 14888888888887774333321
Q ss_pred CCCCCCCCCccchhHHhhHHHHHHHHHHHHHhcCC------CHHHHHHHhhhh------cccccchHHHHHh
Q 020098 268 NPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSK------TSTQNSPCMSNS------LAKQILFQQLEKC 327 (331)
Q Consensus 268 ~~p~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~------s~~qval~~~l~------~~g~~~~~~l~en 327 (331)
- .+|.++|++++. ++.++-..|+.. -.|+|||+-|-+.
T Consensus 225 ------------T----------~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~e 274 (298)
T PRK01045 225 ------------S----------NRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQE 274 (298)
T ss_pred ------------H----------HHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHH
Confidence 1 179999999874 688888888652 3889999766443
No 82
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=60.63 E-value=97 Score=29.66 Aligned_cols=99 Identities=14% Similarity=0.052 Sum_probs=62.0
Q ss_pred CcccE-EEeccCCC------------CChHHHHHHHHHHH-HcCc---eeEEEeec--CcHHHHHHHHHHHHhcCCCeee
Q 020098 161 SSVEL-YQLHWAGI------------WGNEGFIDGLGDAV-EQGL---VKAVGVSN--YSEKRLRNAYEKLKKRGIPLAS 221 (331)
Q Consensus 161 d~iDl-~~lh~p~~------------~~~~~~~~~L~~l~-~~G~---i~~iGvs~--~~~~~l~~~~~~~~~~~~~~~~ 221 (331)
.++|+ +-||.+++ ++.+++.+++.+.. +.|+ |+++=+.+ .+.+.++++.+.+........+
T Consensus 207 ~~v~LalSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~~~~g~~V~ieyvLIpGvNDs~e~a~~La~~l~~l~~~~~V 286 (348)
T PRK14467 207 PEVNLAVSLNASSQKLRERIMPISKTNTLEELMEVLKQYPLPPGRRIMLEYVLIKGVNDSPEDALRLAQLIGKNKKKFKV 286 (348)
T ss_pred cCeeEEEECCCCCHHHHHHhcCCccccCHHHHHHHHHHHHHhcCCeEEEEEEEECCccCCHHHHHHHHHHHhcCCCceEE
Confidence 34565 56688765 23566777776665 3343 45555554 4578888887776533223557
Q ss_pred eeecccccccCccc-------cchhHHHHHcCCeEEEcccCcccc
Q 020098 222 NQVNYSLIYRKPEE-------NGVKAACDELGITLIAYCPIAQGA 259 (331)
Q Consensus 222 ~q~~~n~~~~~~~~-------~~~l~~~~~~gi~v~a~s~l~~G~ 259 (331)
+-++||++...... ..+.+..+++|+.+......+.-+
T Consensus 287 nLIPynp~~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~di 331 (348)
T PRK14467 287 NLIPFNPDPELPYERPELERVYKFQKILWDNGISTFVRWSKGVDI 331 (348)
T ss_pred EEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCcch
Confidence 77899986643221 135566778899999988777644
No 83
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=60.51 E-value=19 Score=33.16 Aligned_cols=94 Identities=20% Similarity=0.247 Sum_probs=64.4
Q ss_pred HHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEee---cCcHHHHHHHHHHHHhcCCCeeeeeecccccc
Q 020098 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVS---NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (331)
Q Consensus 154 sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs---~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~ 230 (331)
++++...+..|++.+..|.-. -..++ ..++...++ |=|+ -+....+.++++.++..++++.++-+.||+.+
T Consensus 155 ~~kk~a~E~~~~~IIDsaaG~-gCpVi---~sl~~aD~a--i~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~g~ 228 (284)
T COG1149 155 ALKKHAKELADLLIIDSAAGT-GCPVI---ASLKGADLA--ILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNLGD 228 (284)
T ss_pred HHHHhhhhhcceeEEecCCCC-CChHH---HhhccCCEE--EEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCCCc
Confidence 444444444788888887531 12222 223344433 3333 24557788888889999999999999997655
Q ss_pred cCccccchhHHHHHcCCeEEEcccCccc
Q 020098 231 RKPEENGVKAACDELGITLIAYCPIAQG 258 (331)
Q Consensus 231 ~~~~~~~~l~~~~~~gi~v~a~s~l~~G 258 (331)
. ++.++|++.|+.+++.-|+..-
T Consensus 229 s-----~ie~~~~e~gi~il~~IPyd~~ 251 (284)
T COG1149 229 S-----EIEEYCEEEGIPILGEIPYDKD 251 (284)
T ss_pred h-----HHHHHHHHcCCCeeEECCcchh
Confidence 4 3899999999999999998864
No 84
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=59.74 E-value=99 Score=29.40 Aligned_cols=152 Identities=13% Similarity=0.014 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 020098 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (331)
Q Consensus 75 ~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~s 154 (331)
++..+.+...++.|++.|=.--...+-. .+.-.=+++++.. -+++.|..-.. ...+.+...+-++ .
T Consensus 143 ~~~~~~a~~~~~~Gf~~~KiKvg~~~~~------~d~~~v~air~~~----g~~~~l~vDaN---~~~~~~~A~~~~~-~ 208 (355)
T cd03321 143 KLATERAVTAAEEGFHAVKTKIGYPTAD------EDLAVVRSIRQAV----GDGVGLMVDYN---QSLTVPEAIERGQ-A 208 (355)
T ss_pred HHHHHHHHHHHHhhhHHHhhhcCCCChH------hHHHHHHHHHHhh----CCCCEEEEeCC---CCcCHHHHHHHHH-H
Confidence 4555566666778887654321111110 1333334444432 23555544331 2345543322222 2
Q ss_pred HHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCce-eEEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccCc
Q 020098 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLV-KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP 233 (331)
Q Consensus 155 L~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i-~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~ 233 (331)
|+.+ ++.++..|-.. +-++.+.+|++.-.| -..|=+.++.+.+.++++. -.++++|+..+-+-.-.
T Consensus 209 l~~~-----~i~~iEeP~~~---~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~-----~~~d~i~~~~~~~GGit 275 (355)
T cd03321 209 LDQE-----GLTWIEEPTLQ---HDYEGHARIASALRTPVQMGENWLGPEEMFKALSA-----GACDLVMPDLMKIGGVT 275 (355)
T ss_pred HHcC-----CCCEEECCCCC---cCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHh-----CCCCeEecCHhhhCCHH
Confidence 3333 55566665432 235677777776544 3456666788888888654 35777777665543211
Q ss_pred cccchhHHHHHcCCeEEEcc
Q 020098 234 EENGVKAACDELGITLIAYC 253 (331)
Q Consensus 234 ~~~~~l~~~~~~gi~v~a~s 253 (331)
+-..+.+.|+.+|+.++.+.
T Consensus 276 ~~~~ia~~A~~~gi~~~~h~ 295 (355)
T cd03321 276 GWLRASALAEQAGIPMSSHL 295 (355)
T ss_pred HHHHHHHHHHHcCCeecccc
Confidence 11248999999999987543
No 85
>PRK05985 cytosine deaminase; Provisional
Probab=59.57 E-value=1.7e+02 Score=28.08 Aligned_cols=170 Identities=14% Similarity=0.047 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHCCCCeE----ECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 020098 75 KAAKAAFDTSLDNGITFF----DTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (331)
Q Consensus 75 ~~~~~~l~~A~~~Gvn~~----Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~ 150 (331)
..+...+..++..|++++ |.-+.++.. +-+.+-++.+.... +-.+-+..-... ...........
T Consensus 98 ~~a~~~~~~~l~~G~t~vr~~~~~~~~~~~~-------~~~~~~~~~~~~~~---~~~~~~v~~~~~--g~~~~~~~~~l 165 (391)
T PRK05985 98 ERALALARAAAAAGTTAMRSHVDVDPDAGLR-------HLEAVLAARETLRG---LIDIQIVAFPQS--GVLSRPGTAEL 165 (391)
T ss_pred HHHHHHHHHHHhcCcceEEeeEccCCCcccc-------hHHHHHHHHHHhhC---cccEEEEeccCc--cccCCcCHHHH
Confidence 457777999999999986 433323221 12333344333321 222223322111 11222122344
Q ss_pred HHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecC---cHHHHHHHHHHHHhcCCC--eeeeeec
Q 020098 151 LKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIP--LASNQVN 225 (331)
Q Consensus 151 v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~---~~~~l~~~~~~~~~~~~~--~~~~q~~ 225 (331)
+++.|+. |.+.+=.+-.|.++....+.+-..++.+.+.|+.-.+=+... ....+.++++.....+.. ..+....
T Consensus 166 l~~~l~~-g~~~~gg~~p~~~~~~~~~~l~~~~~~A~~~g~~i~~Hv~e~~d~~~~~~~~~~e~~~~~g~~~~~~i~H~~ 244 (391)
T PRK05985 166 LDAALRA-GADVVGGLDPAGIDGDPEGQLDIVFGLAERHGVGIDIHLHEPGELGAFQLERIAARTRALGMQGRVAVSHAF 244 (391)
T ss_pred HHHHHHc-CCCEEeCCCCCCcCCCHHHHHHHHHHHHHHhCCCcEEeeCCCCCccHHHHHHHHHHHHHhCCCCCEehhhhh
Confidence 5555554 323111111133332233444455566677776543333332 224555555554444432 2221111
Q ss_pred ccccccCcc-ccchhHHHHHcCCeEEEcccCccc
Q 020098 226 YSLIYRKPE-ENGVKAACDELGITLIAYCPIAQG 258 (331)
Q Consensus 226 ~n~~~~~~~-~~~~l~~~~~~gi~v~a~s~l~~G 258 (331)
. +-....+ ...+++.+++.|+.|..-.+...|
T Consensus 245 ~-l~~~~~~~~~~~i~~lae~g~~v~~~~~~~~~ 277 (391)
T PRK05985 245 C-LGDLPEREVDRLAERLAEAGVAIMTNAPGSVP 277 (391)
T ss_pred h-hhcCCHHHHHHHHHHHHHcCCeEEEeCCCCCC
Confidence 1 1111111 013688889999988765455444
No 86
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=59.57 E-value=1.6e+02 Score=27.79 Aligned_cols=80 Identities=11% Similarity=0.096 Sum_probs=41.8
Q ss_pred CcEEEEecCCCCC---CCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCC-------CChHHHHHHHHHHHHcCceeEEE
Q 020098 127 VEVTVATKFAALP---WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-------WGNEGFIDGLGDAVEQGLVKAVG 196 (331)
Q Consensus 127 ~~~~i~tK~~~~~---~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~-------~~~~~~~~~L~~l~~~G~i~~iG 196 (331)
+++.|..|+.... ...+.+... .+-+.|+..|+|+|+ +|.... ......++.+.++++.=.|--++
T Consensus 220 ~d~~v~vri~~~~~~~~g~~~~e~~-~ia~~Le~~gvd~ie---v~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~ 295 (336)
T cd02932 220 EDKPLFVRISATDWVEGGWDLEDSV-ELAKALKELGVDLID---VSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIA 295 (336)
T ss_pred CCceEEEEEcccccCCCCCCHHHHH-HHHHHHHHcCCCEEE---ECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEE
Confidence 5677888876421 223343332 233445666765554 342110 11122345566666665666677
Q ss_pred eecC-cHHHHHHHHH
Q 020098 197 VSNY-SEKRLRNAYE 210 (331)
Q Consensus 197 vs~~-~~~~l~~~~~ 210 (331)
..+. +++..+++++
T Consensus 296 ~G~i~t~~~a~~~l~ 310 (336)
T cd02932 296 VGLITDPEQAEAILE 310 (336)
T ss_pred eCCCCCHHHHHHHHH
Confidence 7665 6677777754
No 87
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=59.55 E-value=1.3e+02 Score=26.65 Aligned_cols=130 Identities=17% Similarity=0.155 Sum_probs=71.5
Q ss_pred HHHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecC-cHHHHHHHHHHHHhcCCCeeeeeeccc
Q 020098 149 AALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYS 227 (331)
Q Consensus 149 ~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~-~~~~l~~~~~~~~~~~~~~~~~q~~~n 227 (331)
+.++...+.||+.+. .+-+.+......+.+..+|.+++++| +..|-.... +..+-....+.+...++++.. .
T Consensus 46 ~~~~~~A~~lgip~~-~i~~~~~~~~~~~~l~~~l~~~~~~g-~~~vv~G~i~sd~~~~~~e~v~~~~gl~~~~--P--- 118 (218)
T TIGR03679 46 ELTRLQAEALGIPLV-KIETSGEKEKEVEDLKGALKELKREG-VEGIVTGAIASRYQKSRIERICEELGLKVFA--P--- 118 (218)
T ss_pred HHHHHHHHHhCCCEE-EEECCCCChHHHHHHHHHHHHHHHcC-CCEEEECCcccHhHHHHHHHHHHhCCCeEEe--e---
Confidence 445666678887642 33333322233456788888888885 665554433 333334444445554443221 1
Q ss_pred ccccCccccchhHHHHHcCCeEEEcccCccccccCCCCCCCCCCCCCCCccchhHHhhHHHHHHHHHHHHHhcCCCH
Q 020098 228 LIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (331)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~ 304 (331)
++..... ++++.+.+.|+..+.-+.-+.|+ ...|. ++.+. .+.++.|.++.++||++|
T Consensus 119 Lw~~~~~--el~~~~~~~G~~~~i~~v~~~~l-~~~~l---------G~~~~-------~~~~~~l~~l~~~~~~~~ 176 (218)
T TIGR03679 119 LWGRDQE--EYLRELVERGFRFIIVSVSAYGL-DESWL---------GREID-------EKYIEKLKALNKRYGINP 176 (218)
T ss_pred hhcCCHH--HHHHHHHHCCCEEEEEEEecCCC-ChHHC---------CCccC-------HHHHHHHHHHHhhcCccc
Confidence 1222223 59999999999988766666553 11111 01111 234557888888888765
No 88
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=59.23 E-value=1.7e+02 Score=28.96 Aligned_cols=105 Identities=19% Similarity=0.169 Sum_probs=59.4
Q ss_pred HHHHHHHHHhccCCCCC-CcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCC------hHHHHHH
Q 020098 110 ETLLGRFIKERKQRDPE-VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG------NEGFIDG 182 (331)
Q Consensus 110 E~~iG~~l~~~~~~~~R-~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~------~~~~~~~ 182 (331)
|+-+-++|+...+..++ +-++|.|=+.. ..-.+.+..-+++.-++.+ +.++.+|-|.... ...+.++
T Consensus 102 ~~~L~~aI~~~~~~~~p~~~I~V~~tC~~---~liGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~~~~~G~~~a~~a 175 (443)
T TIGR01862 102 EKKLKKLIHEAFTEFPLIKAISVYATCPT---GLIGDDIEAVAKEVSKEIG---KDVVAVNCPGFAGVSQSKGHHIANIA 175 (443)
T ss_pred HHHHHHHHHHHHHhCCccceEEEECCChH---HHhccCHHHHHHHHHHhcC---CCEEEEecCCccCCccchHHHHHHHH
Confidence 78888888876654444 66777777632 1222223333333333333 6899999887632 1222332
Q ss_pred -HHHHH--------HcCceeEEEeecCcHHHHHHHHHHHHhcCCCeee
Q 020098 183 -LGDAV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (331)
Q Consensus 183 -L~~l~--------~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~ 221 (331)
++.+. +.++|.-||-.++ +..++++.+..+..|+++..
T Consensus 176 l~~~l~~~~~~~~~~~~~VNiig~~~~-~~d~~el~~lL~~~Gl~v~~ 222 (443)
T TIGR01862 176 VINDKVGTREKEITTEYDVNIIGEYNI-GGDAWVMRIYLEEMGIQVVA 222 (443)
T ss_pred HHHHHhCCCCcccCCCCeEEEEccCcC-cccHHHHHHHHHHcCCeEEE
Confidence 33443 2467888886555 34455565657777766543
No 89
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=59.16 E-value=1.7e+02 Score=27.98 Aligned_cols=139 Identities=14% Similarity=0.110 Sum_probs=82.7
Q ss_pred HHHHHHHHhccC--CCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhC-CCcccEEEeccCCC------------CC
Q 020098 111 TLLGRFIKERKQ--RDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG-LSSVELYQLHWAGI------------WG 175 (331)
Q Consensus 111 ~~iG~~l~~~~~--~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg-~d~iDl~~lh~p~~------------~~ 175 (331)
+.+-++++.... ......+.|+| +|. ...+++-.+.-+++|| .+....+.||.++. ++
T Consensus 165 ~~v~~~i~~l~~~~~i~~r~itvST-~G~------~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~ 237 (345)
T PRK14457 165 DEVLAAIRCLNQDLGIGQRRITVST-VGV------PKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYP 237 (345)
T ss_pred HHHHHHHHHHhcccCCccCceEEEC-CCc------hhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCC
Confidence 445555655421 11123666766 332 2234333333334442 34457788998876 34
Q ss_pred hHHHHHHHHH-HHHcCc---eeEEEee--cCcHHHHHHHHHHHHhcCCCeeeeeecccccccCccc-------cchhHHH
Q 020098 176 NEGFIDGLGD-AVEQGL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-------NGVKAAC 242 (331)
Q Consensus 176 ~~~~~~~L~~-l~~~G~---i~~iGvs--~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~-------~~~l~~~ 242 (331)
.+++++++.+ +.+.|+ |+++=+. |.+.+.++++.+.++. ++..++-++||++...... ..+.+..
T Consensus 238 l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~La~~l~~--l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L 315 (345)
T PRK14457 238 IENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEELANLLRG--FQSHVNLIPYNPIDEVEFQRPSPKRIQAFQRVL 315 (345)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHHHHHHHhc--CCCeEEEecCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 6788877766 455564 4555554 5577888888777653 3457888999987653321 1356667
Q ss_pred HHcCCeEEEcccCccc
Q 020098 243 DELGITLIAYCPIAQG 258 (331)
Q Consensus 243 ~~~gi~v~a~s~l~~G 258 (331)
+++||.+......+.-
T Consensus 316 ~~~Gi~vtvR~~~G~d 331 (345)
T PRK14457 316 EQRGVAVSVRASRGLD 331 (345)
T ss_pred HHCCCeEEEeCCCCCc
Confidence 7889999987777643
No 90
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=59.03 E-value=94 Score=29.73 Aligned_cols=92 Identities=17% Similarity=0.099 Sum_probs=63.2
Q ss_pred EEEeccCCC------------CChHHHHHHHHHHHHcC--ce--eEEEee--cCcHHHHHHHHHHHHhcCCCeeeeeecc
Q 020098 165 LYQLHWAGI------------WGNEGFIDGLGDAVEQG--LV--KAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (331)
Q Consensus 165 l~~lh~p~~------------~~~~~~~~~L~~l~~~G--~i--~~iGvs--~~~~~~l~~~~~~~~~~~~~~~~~q~~~ 226 (331)
.+.||.|+. ++.+++++++.+..++. +| .++=+. |.+.+++.++.+.++ +.+..++-++|
T Consensus 210 avSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~--~~~~~VNLIp~ 287 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLR--GIDCRVNLIRF 287 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHc--CCCceEEEEec
Confidence 578898775 45788999999876543 32 344443 667888888887765 34677888999
Q ss_pred cccccCccc-------cchhHHHHHcCCeEEEcccCccc
Q 020098 227 SLIYRKPEE-------NGVKAACDELGITLIAYCPIAQG 258 (331)
Q Consensus 227 n~~~~~~~~-------~~~l~~~~~~gi~v~a~s~l~~G 258 (331)
|+....... ..+.+..+++||.+......+.-
T Consensus 288 Np~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~d 326 (345)
T PRK14466 288 HAIPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGED 326 (345)
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCCc
Confidence 975442221 13566678899999998777653
No 91
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=58.90 E-value=77 Score=28.97 Aligned_cols=80 Identities=14% Similarity=0.074 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 020098 76 AAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSL 155 (331)
Q Consensus 76 ~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL 155 (331)
+...+.+.+.++|..|+=|+..|+.+.+ ..+.-+++-+.+++... ..+ +.-|... .=.+.+.....++..-
T Consensus 148 ~i~~a~~~a~~aGADFVKTSTGf~~~gA--t~edv~lm~~~i~~~~~---~~~--vgIKAsG--GIrt~~~A~~~i~ag~ 218 (257)
T PRK05283 148 LIRKASEIAIKAGADFIKTSTGKVPVNA--TLEAARIMLEVIRDMGV---AKT--VGFKPAG--GVRTAEDAAQYLALAD 218 (257)
T ss_pred HHHHHHHHHHHhCCCEEEcCCCCCCCCC--CHHHHHHHHHHHHhccc---CCC--eeEEccC--CCCCHHHHHHHHHHHH
Confidence 5888999999999999999999975322 22334555555543310 122 4445532 3367888999999999
Q ss_pred HhhCCCccc
Q 020098 156 FRLGLSSVE 164 (331)
Q Consensus 156 ~~Lg~d~iD 164 (331)
+.||.+|++
T Consensus 219 ~~lg~~~~~ 227 (257)
T PRK05283 219 EILGADWAD 227 (257)
T ss_pred HHhChhhcC
Confidence 999999987
No 92
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=58.52 E-value=62 Score=29.58 Aligned_cols=107 Identities=17% Similarity=0.162 Sum_probs=57.1
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCC-------CChHHHHHHHHHHHHcCceeEEEeecCc---HHHHHHHH
Q 020098 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-------WGNEGFIDGLGDAVEQGLVKAVGVSNYS---EKRLRNAY 209 (331)
Q Consensus 140 ~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~-------~~~~~~~~~L~~l~~~G~i~~iGvs~~~---~~~l~~~~ 209 (331)
+.++.+.. ..+-+.|.++|+|+|++-+...... ....+.|+.+..+.+ +..+..+++... .+.++.+
T Consensus 15 ~~f~~~~~-~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a- 91 (266)
T cd07944 15 WDFGDEFV-KAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPA- 91 (266)
T ss_pred ccCCHHHH-HHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHH-
Confidence 34666654 4555669999999999877654321 223566666666553 234545555433 2333332
Q ss_pred HHHHhcCCCeeeeeecccccccCccccchhHHHHHcCCeEEEcccC
Q 020098 210 EKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPI 255 (331)
Q Consensus 210 ~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l 255 (331)
...+++..-+....+.++.-. +.+++++++|+.|...-..
T Consensus 92 ---~~~gv~~iri~~~~~~~~~~~---~~i~~ak~~G~~v~~~~~~ 131 (266)
T cd07944 92 ---SGSVVDMIRVAFHKHEFDEAL---PLIKAIKEKGYEVFFNLMA 131 (266)
T ss_pred ---hcCCcCEEEEecccccHHHHH---HHHHHHHHCCCeEEEEEEe
Confidence 233333322333333322222 4788888888876654333
No 93
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=58.41 E-value=1e+02 Score=26.36 Aligned_cols=122 Identities=20% Similarity=0.223 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHCCCCeEECCcCcCCCCC--CCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCC---CCCCCHHHHHH
Q 020098 75 KAAKAAFDTSLDNGITFFDTAEVYGSRAS--FGAINSETLLGRFIKERKQRDPEVEVTVATKFAAL---PWRLGRQSVLA 149 (331)
Q Consensus 75 ~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~--~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~---~~~~~~~~i~~ 149 (331)
+++..+|-.++..|-..+=+ |||.| +.-|-+++++|++.+.++.. --+-|+|-.... ..+++++.+
T Consensus 28 ~~aa~~i~~~l~~G~Kvl~c----GNGgSaadAqHfaael~gRf~~eR~~l---paIaLt~dsS~lTai~NDy~yd~v-- 98 (176)
T COG0279 28 ERAAQLLVQSLLNGNKVLAC----GNGGSAADAQHFAAELTGRFEKERPSL---PAIALSTDSSVLTAIANDYGYDEV-- 98 (176)
T ss_pred HHHHHHHHHHHHcCCEEEEE----CCCcchhhHHHHHHHHhhHHHhcCCCC---CeeEeecccHHHhhhhccccHHHH--
Confidence 56778888999999999875 56554 12335677777777766532 356666554331 246667754
Q ss_pred HHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecCcHHHHHHHH
Q 020098 150 ALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAY 209 (331)
Q Consensus 150 ~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~ 209 (331)
+.+-.+.+|.. =|+++==.+.. ..+.++++++..++.|..- ||+.+-+...+..++
T Consensus 99 -FsRqveA~g~~-GDvLigISTSG-NS~nVl~Ai~~Ak~~gm~v-I~ltG~~GG~~~~~~ 154 (176)
T COG0279 99 -FSRQVEALGQP-GDVLIGISTSG-NSKNVLKAIEAAKEKGMTV-IALTGKDGGKLAGLL 154 (176)
T ss_pred -HHHHHHhcCCC-CCEEEEEeCCC-CCHHHHHHHHHHHHcCCEE-EEEecCCCccccccc
Confidence 34455566644 37766555542 5688999999999999654 899888877776663
No 94
>PLN02428 lipoic acid synthase
Probab=58.30 E-value=1.8e+02 Score=27.94 Aligned_cols=165 Identities=14% Similarity=0.186 Sum_probs=92.1
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECC-c---CcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHH
Q 020098 72 RKMKAAKAAFDTSLDNGITFFDTA-E---VYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSV 147 (331)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gvn~~Dta-~---~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i 147 (331)
.+.++..++...+.+.|++++=.. . .|.++. -..+.+.++...+.. .++.|..=.. ....+
T Consensus 130 ~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~g-------a~~~~elir~Ir~~~--P~i~Ie~L~p--df~~d---- 194 (349)
T PLN02428 130 PDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGG-------SGHFAETVRRLKQLK--PEILVEALVP--DFRGD---- 194 (349)
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCccc-------HHHHHHHHHHHHHhC--CCcEEEEeCc--cccCC----
Confidence 345666777888888999865432 1 233321 345666666654211 1333332110 01112
Q ss_pred HHHHHHHHHhhCCCcccEEEeccCCC------------CChHHHHHHHHHHHHc--Ccee----EEEeecCcHHHHHHHH
Q 020098 148 LAALKDSLFRLGLSSVELYQLHWAGI------------WGNEGFIDGLGDAVEQ--GLVK----AVGVSNYSEKRLRNAY 209 (331)
Q Consensus 148 ~~~v~~sL~~Lg~d~iDl~~lh~p~~------------~~~~~~~~~L~~l~~~--G~i~----~iGvs~~~~~~l~~~~ 209 (331)
++.|+.|.-.-+|. +-|+++. ...++.++.|+.+++. |..- .+|+ +-+.+++.+.+
T Consensus 195 ----~elL~~L~eAG~d~-i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l 268 (349)
T PLN02428 195 ----LGAVETVATSGLDV-FAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTM 268 (349)
T ss_pred ----HHHHHHHHHcCCCE-EccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHH
Confidence 33333332222555 3366654 1247789999999988 7653 4677 56788888888
Q ss_pred HHHHhcCCCeee---------eeecccccccCccccchhHHHHHcCCeEEEcccCcc
Q 020098 210 EKLKKRGIPLAS---------NQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (331)
Q Consensus 210 ~~~~~~~~~~~~---------~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~ 257 (331)
+.+...++.+.. ..++.+-+-...+-..+-+++.+.|...++.+||-.
T Consensus 269 ~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vr 325 (349)
T PLN02428 269 EDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVR 325 (349)
T ss_pred HHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 877776643222 222333333222222477888888999999888885
No 95
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=57.90 E-value=1.5e+02 Score=26.86 Aligned_cols=136 Identities=15% Similarity=0.172 Sum_probs=82.9
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCC---CChHHHHHHHHHH
Q 020098 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDA 186 (331)
Q Consensus 110 E~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~---~~~~~~~~~L~~l 186 (331)
+.++..+++..........+.++..+.. ..+....+...+.+.+++.+++.- -+.+.-.+. ...+.+...++.|
T Consensus 69 ~~v~~~a~~~~~~~~~~~~~~l~iNis~--~~l~~~~~~~~l~~~l~~~~~~~~-~l~lEitE~~~~~~~~~~~~~l~~L 145 (256)
T COG2200 69 RWVLEEACRQLRTWPRAGPLRLAVNLSP--VQLRSPGLVDLLLRLLARLGLPPH-RLVLEITESALIDDLDTALALLRQL 145 (256)
T ss_pred HHHHHHHHHHHHhhhhcCCceEEEEcCH--HHhCCchHHHHHHHHHHHhCCCcc-eEEEEEeCchhhcCHHHHHHHHHHH
Confidence 6667777766542210113777777754 223345566677788888876542 444443333 2344688899999
Q ss_pred HHcCceeEEEeecCcH--HHHHHHHHHHHhcCCCeeeeeecccccccCccc-------cchhHHHHHcCCeEEEcccCc
Q 020098 187 VEQGLVKAVGVSNYSE--KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-------NGVKAACDELGITLIAYCPIA 256 (331)
Q Consensus 187 ~~~G~i~~iGvs~~~~--~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~-------~~~l~~~~~~gi~v~a~s~l~ 256 (331)
++.| -.|.+.+|.. ..+..+.+ .+|+++-+.-+++..-... ..++..|++.|+.|++-+.-.
T Consensus 146 ~~~G--~~ialDDFGtG~ssl~~L~~------l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vvaEGVEt 216 (256)
T COG2200 146 RELG--VRIALDDFGTGYSSLSYLKR------LPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVAEGVET 216 (256)
T ss_pred HHCC--CeEEEECCCCCHHHHHHHhh------CCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEEeecCC
Confidence 9999 3366766632 33444422 5777777766665542211 258999999999999955433
No 96
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=57.63 E-value=1.3e+02 Score=28.90 Aligned_cols=90 Identities=13% Similarity=0.065 Sum_probs=61.3
Q ss_pred EeccCCC------------CChHHHHHHHHHHH-HcCc---eeEEEeec--CcHHHHHHHHHHHHhcCCCeeeeeecccc
Q 020098 167 QLHWAGI------------WGNEGFIDGLGDAV-EQGL---VKAVGVSN--YSEKRLRNAYEKLKKRGIPLASNQVNYSL 228 (331)
Q Consensus 167 ~lh~p~~------------~~~~~~~~~L~~l~-~~G~---i~~iGvs~--~~~~~l~~~~~~~~~~~~~~~~~q~~~n~ 228 (331)
-||.++. ++.+++++++.++. +.|+ |+++=+.+ .+.+.++++.+.++. .+..++-++||+
T Consensus 225 SLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~--l~~~VnLIPyn~ 302 (356)
T PRK14462 225 SLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNG--IKAKVNLILFNP 302 (356)
T ss_pred ECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhh--cCcEEEEEeCCC
Confidence 4898876 34578889888665 4454 56666654 467888888777653 356888999998
Q ss_pred cccCcccc-------chhHHHHHcCCeEEEcccCccc
Q 020098 229 IYRKPEEN-------GVKAACDELGITLIAYCPIAQG 258 (331)
Q Consensus 229 ~~~~~~~~-------~~l~~~~~~gi~v~a~s~l~~G 258 (331)
+....... .+.+..+++||.+......+.-
T Consensus 303 ~~~~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~G~d 339 (356)
T PRK14462 303 HEGSKFERPSLEDMIKFQDYLNSKGLLCTIRESKGLD 339 (356)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCCc
Confidence 76432211 2455667889999988777653
No 97
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=57.38 E-value=73 Score=31.20 Aligned_cols=109 Identities=9% Similarity=0.038 Sum_probs=61.6
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhC-CCcccEEEeccCCCCC--hH---HHHHHH
Q 020098 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG-LSSVELYQLHWAGIWG--NE---GFIDGL 183 (331)
Q Consensus 110 E~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg-~d~iDl~~lh~p~~~~--~~---~~~~~L 183 (331)
|+-+-++|+...++.+.+-++|.|-+...-..-+-+ .-+++.-++.- ...+.++.+|.|+... .. .++++|
T Consensus 66 ~~~L~~~i~~~~~~~~p~~I~V~ttc~~eiIGdDi~---~v~~~~~~~~p~~~~~~vi~v~t~gf~g~~~~G~~~a~~al 142 (417)
T cd01966 66 GENLEEALDTLAERAKPKVIGLLSTGLTETRGEDIA---GALKQFRAEHPELADVPVVYVSTPDFEGSLEDGWAAAVEAI 142 (417)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcccccccCHH---HHHHHHHhhccccCCCeEEEecCCCCCCcHHHHHHHHHHHH
Confidence 777777777765433356778888775321122222 22222222210 0136788899988632 22 333333
Q ss_pred HH-H--------HHcCceeEEEeecCcHHHHHHHHHHHHhcCCCeee
Q 020098 184 GD-A--------VEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (331)
Q Consensus 184 ~~-l--------~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~ 221 (331)
-+ + +..++|.-||-++.++..+.++.+..+..|+.+.+
T Consensus 143 ~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v~~ 189 (417)
T cd01966 143 IEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEPII 189 (417)
T ss_pred HHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCceEE
Confidence 21 2 23566888986666677777777778877776543
No 98
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=57.19 E-value=31 Score=34.36 Aligned_cols=106 Identities=10% Similarity=0.010 Sum_probs=72.2
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHH----------HHHHHHHHhhCCCcccEEEeccCCCCChHHH
Q 020098 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL----------AALKDSLFRLGLSSVELYQLHWAGIWGNEGF 179 (331)
Q Consensus 110 E~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~----------~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~ 179 (331)
|.+..-+-+..+.. -+.++||++-+|.+.... |..+. -.-.+.-+|+.+.|+|.+. .++++.
T Consensus 142 eT~~~aark~f~~~-L~G~~~lTaGLGGMgGAQ-PlA~~mag~v~i~vEvd~~ri~kR~~~gyld~~~------~~ldea 213 (545)
T TIGR01228 142 ETFAELARQHFGGS-LKGKWVLTAGLGGMGGAQ-PLAVTMNGGVSIAVEVDESRIDKRLETKYCDEQT------DSLDEA 213 (545)
T ss_pred HHHHHHHHHhcCCC-CceeEEEEeCCCcccccc-HHHHHHcCceEEEEEECHHHHHHHHhcCcceeEc------CCHHHH
Confidence 55555554544432 268999999998643211 22111 1233455788889998542 468999
Q ss_pred HHHHHHHHHcCceeEEEeecCcHHHHHHHHHHHHhcCCCeee--eeeccc
Q 020098 180 IDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS--NQVNYS 227 (331)
Q Consensus 180 ~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~--~q~~~n 227 (331)
++..++.+++|+...||+-+.-.+.+.++++. ++.|++ -|+..|
T Consensus 214 l~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r----~i~pDlvtDQTSaH 259 (545)
T TIGR01228 214 LARAEEAKAEGKPISIGLLGNAAEVLPELLKR----GVVPDVVTDQTSAH 259 (545)
T ss_pred HHHHHHHHHcCCceEEEeeccHHHHHHHHHHc----CCCCCCcCCCCccc
Confidence 99999999999999999999988888888543 455544 576664
No 99
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=57.13 E-value=2.2e+02 Score=28.74 Aligned_cols=104 Identities=10% Similarity=0.101 Sum_probs=55.8
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhC-CCcccEEEeccCCCCC--h---HHHHHHH
Q 020098 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG-LSSVELYQLHWAGIWG--N---EGFIDGL 183 (331)
Q Consensus 110 E~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg-~d~iDl~~lh~p~~~~--~---~~~~~~L 183 (331)
++.+-+.|+...+..+.+-++|.|-|. .+-|-..++...+.++ ..-++++.+|.|.... . +.+++.+
T Consensus 70 ~~kL~~~I~~~~~~~~P~~I~V~tTC~-------~eiIGDDi~~v~~~~~~~~~~pVi~v~t~~f~g~~~~g~~~~l~~l 142 (513)
T CHL00076 70 QEKVVDNITRKDKEERPDLIVLTPTCT-------SSILQEDLQNFVDRASIESDSDVILADVNHYRVNELQAADRTLEQI 142 (513)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCc-------hhhhhcCHHHHHHHhhcccCCCEEEeCCCCCcccHHHHHHHHHHHH
Confidence 666666676554333356667776663 3333333333333332 1236899999997632 1 2222222
Q ss_pred HH-H--------------HHcCceeEEEeecC---cHHHHHHHHHHHHhcCCCee
Q 020098 184 GD-A--------------VEQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPLA 220 (331)
Q Consensus 184 ~~-l--------------~~~G~i~~iGvs~~---~~~~l~~~~~~~~~~~~~~~ 220 (331)
-+ + +..++|.-||.++. ....+.++.+.++..|+.+.
T Consensus 143 v~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn 197 (513)
T CHL00076 143 VRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEIN 197 (513)
T ss_pred HHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEE
Confidence 21 1 12366999997742 34556666666776766554
No 100
>PRK05414 urocanate hydratase; Provisional
Probab=56.97 E-value=33 Score=34.33 Aligned_cols=106 Identities=10% Similarity=-0.010 Sum_probs=71.7
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHH----------HHHHHHHHhhCCCcccEEEeccCCCCChHHH
Q 020098 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL----------AALKDSLFRLGLSSVELYQLHWAGIWGNEGF 179 (331)
Q Consensus 110 E~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~----------~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~ 179 (331)
|.++.-+-+..... -+.++||++-+|.+.... +..+. -.-.+.-+|+.+.|+|.+. .++++.
T Consensus 151 eT~~~a~rk~f~g~-L~G~~~lTaGLGGMgGAQ-PlA~~mag~v~i~vEvd~~ri~kR~~~gyld~~~------~~Ldea 222 (556)
T PRK05414 151 ETFAEAARQHFGGD-LAGRLVLTAGLGGMGGAQ-PLAATMAGAVCLAVEVDESRIDKRLRTGYLDEKA------DDLDEA 222 (556)
T ss_pred HHHHHHHHHhcCCC-CceeEEEEecCCcccccc-HHHHHhcCceEEEEEECHHHHHHHHhCCcceeEc------CCHHHH
Confidence 55554444444322 268999999998643211 21111 1234455788889998542 568999
Q ss_pred HHHHHHHHHcCceeEEEeecCcHHHHHHHHHHHHhcCCCeee--eeeccc
Q 020098 180 IDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS--NQVNYS 227 (331)
Q Consensus 180 ~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~--~q~~~n 227 (331)
++..++.+++|+...||+-+.-.+.++++++. ++.|++ -|+..|
T Consensus 223 l~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~----~i~pDlvtDQTSaH 268 (556)
T PRK05414 223 LALAEEAKAAGEPLSIGLLGNAADVLPELVRR----GIRPDLVTDQTSAH 268 (556)
T ss_pred HHHHHHHHHcCCceEEEEeccHHHHHHHHHHc----CCCCCccCcCcccc
Confidence 99999999999999999999988888888543 455544 576664
No 101
>PRK14017 galactonate dehydratase; Provisional
Probab=56.95 E-value=1.9e+02 Score=27.84 Aligned_cols=84 Identities=15% Similarity=0.109 Sum_probs=55.6
Q ss_pred ccEEEeccCCCCChHHHHHHHHHHHHcCcee-EEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHH
Q 020098 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (331)
Q Consensus 163 iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~-~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~ 241 (331)
+++.++..|-.. +-++.+.+|.+...+. ..|=|.++.+.+..+++. ..++++|+...-+-.-..-..+.+.
T Consensus 203 ~~~~~iEeP~~~---~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~-----~a~d~v~~d~~~~GGit~~~~ia~~ 274 (382)
T PRK14017 203 YRPMFIEEPVLP---ENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEA-----GGVDIIQPDLSHAGGITECRKIAAM 274 (382)
T ss_pred cCCCeEECCCCc---CCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHc-----CCCCeEecCccccCCHHHHHHHHHH
Confidence 455666666431 2257788888877664 566677888888888664 3477777776544221111258999
Q ss_pred HHHcCCeEEEccc
Q 020098 242 CDELGITLIAYCP 254 (331)
Q Consensus 242 ~~~~gi~v~a~s~ 254 (331)
|+++||.+..++.
T Consensus 275 A~~~gi~~~~h~~ 287 (382)
T PRK14017 275 AEAYDVALAPHCP 287 (382)
T ss_pred HHHcCCeEeecCC
Confidence 9999999998764
No 102
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=56.82 E-value=1.1e+02 Score=25.27 Aligned_cols=108 Identities=14% Similarity=0.177 Sum_probs=69.9
Q ss_pred HHHHHHHHHHH-HCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 020098 75 KAAKAAFDTSL-DNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (331)
Q Consensus 75 ~~~~~~l~~A~-~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~ 153 (331)
+.-.+++.+++ +.|+..+.+.-.-.. |+.+-.++..-. +++..+-. .-.....-..+-+
T Consensus 26 d~gakvia~~l~d~GfeVi~~g~~~tp---------~e~v~aA~~~dv------~vIgvSsl-----~g~h~~l~~~lve 85 (143)
T COG2185 26 DRGAKVIARALADAGFEVINLGLFQTP---------EEAVRAAVEEDV------DVIGVSSL-----DGGHLTLVPGLVE 85 (143)
T ss_pred ccchHHHHHHHHhCCceEEecCCcCCH---------HHHHHHHHhcCC------CEEEEEec-----cchHHHHHHHHHH
Confidence 34446788887 779998887665555 999999887643 55544443 2346677888889
Q ss_pred HHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecCcHHHHHHHH
Q 020098 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAY 209 (331)
Q Consensus 154 sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~ 209 (331)
.|+..|.+. ++.+-... .+.++ +++|++.|--+.++-..--.+-+..++
T Consensus 86 ~lre~G~~~--i~v~~GGv-ip~~d----~~~l~~~G~~~if~pgt~~~~~~~~v~ 134 (143)
T COG2185 86 ALREAGVED--ILVVVGGV-IPPGD----YQELKEMGVDRIFGPGTPIEEALSDLL 134 (143)
T ss_pred HHHHhCCcc--eEEeecCc-cCchh----HHHHHHhCcceeeCCCCCHHHHHHHHH
Confidence 999999985 44333322 22222 677888888887877544334444443
No 103
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=56.78 E-value=1.6e+02 Score=26.84 Aligned_cols=34 Identities=9% Similarity=0.197 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCC
Q 020098 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFG 105 (331)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~ 105 (331)
.+.+...+++++..+.|++.++-.=-|.+..+||
T Consensus 21 P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDG 54 (256)
T TIGR00262 21 PTLETSLEIIKTLIEAGADALELGVPFSDPLADG 54 (256)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcC
Confidence 3458888999999999999999888787766654
No 104
>PLN02363 phosphoribosylanthranilate isomerase
Probab=56.75 E-value=40 Score=30.80 Aligned_cols=65 Identities=14% Similarity=-0.002 Sum_probs=41.3
Q ss_pred HhhCCCcccEEEec-cCCCCChHHHHHHHHHHHHcCceeEEEee-cCcHHHHHHHHHHHHhcCCCeeeeeecc
Q 020098 156 FRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (331)
Q Consensus 156 ~~Lg~d~iDl~~lh-~p~~~~~~~~~~~L~~l~~~G~i~~iGvs-~~~~~~l~~~~~~~~~~~~~~~~~q~~~ 226 (331)
.++|.|++=+++.. .|.....+.+-+.... .....++.|||. |-+++.+.++++. ..++++|++-
T Consensus 64 ~~~GaD~iGfIf~~~SpR~Vs~e~a~~I~~~-l~~~~~~~VgVfv~~~~~~I~~~~~~-----~~ld~VQLHG 130 (256)
T PLN02363 64 VEAGADFIGMILWPKSKRSISLSVAKEISQV-AREGGAKPVGVFVDDDANTILRAADS-----SDLELVQLHG 130 (256)
T ss_pred HHcCCCEEEEecCCCCCCcCCHHHHHHHHHh-ccccCccEEEEEeCCCHHHHHHHHHh-----cCCCEEEECC
Confidence 35899999987543 3333344443333333 322236679986 6688888888665 6789999975
No 105
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=56.49 E-value=57 Score=32.04 Aligned_cols=132 Identities=14% Similarity=0.172 Sum_probs=68.3
Q ss_pred chHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHH
Q 020098 108 NSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAV 187 (331)
Q Consensus 108 ~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~ 187 (331)
+|-+.+++.|..-+ ++ ++.|.-+ .-+..-+.+++-..... +++. .++++|.-- .-+.+..+.|+
T Consensus 89 ~aR~~VAklInAd~-----~d-IiFts~A----TEs~Nlvl~~v~~~~~~-~~~k-~iitl~~eH----~~v~~s~~~l~ 152 (428)
T KOG1549|consen 89 AAREQVAKLINADP-----SD-IVFTSGA----TESNNLVLKGVARFFGD-KTKK-HIITLQTEH----PCVLDSCRALQ 152 (428)
T ss_pred HHHHHHHHHhCCCC-----Cc-EEEeCCc----hHHHHHHHHHhhccccc-cccc-eEEEecccC----cchhHHHHHHH
Confidence 34455666665544 44 5555442 34455566666665555 5554 555555422 22455566677
Q ss_pred HcCc-eeEEEeecCcHHHHHHHHHHHHhcC--CCeeeeeecccccccCccccchhHHHHHcCCeEEEcccCccc
Q 020098 188 EQGL-VKAVGVSNYSEKRLRNAYEKLKKRG--IPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (331)
Q Consensus 188 ~~G~-i~~iGvs~~~~~~l~~~~~~~~~~~--~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G 258 (331)
++|. |.++.+.+-....++++.+..+..- +-++.+..+-.++.+ -+ ++...|++.||.+++-.+.+=|
T Consensus 153 ~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~P--v~-EI~~icr~~~v~v~~DaAQavG 223 (428)
T KOG1549|consen 153 EEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQP--VK-EIVKICREEGVQVHVDAAQAVG 223 (428)
T ss_pred hcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCcccccc--HH-HHHHHhCcCCcEEEeehhhhcC
Confidence 7775 4777777554444444444332211 112222222222222 22 4888888888888765554443
No 106
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=56.40 E-value=1.7e+02 Score=27.84 Aligned_cols=125 Identities=15% Similarity=0.121 Sum_probs=73.4
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEECCcCcCCCC------------CCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCC
Q 020098 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRA------------SFGAINSETLLGRFIKERKQRDPEVEVTVATKFAAL 138 (331)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~------------~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~ 138 (331)
.++.+...++.+.|-+.|+-+|=|--.+..-. .++-.+-..+|-. +.+. -+.+.++|-.
T Consensus 86 ~~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~-iA~~-----~kPiIlSTGm--- 156 (347)
T COG2089 86 ETPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKY-IAKK-----GKPIILSTGM--- 156 (347)
T ss_pred cCCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHH-HHhc-----CCCEEEEccc---
Confidence 45567888899999999999997755443200 0000011222222 2222 2577777776
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCC--hHHH-HHHHHHHHHcCceeEEEeecCcHHHHHHHHHH
Q 020098 139 PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG--NEGF-IDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (331)
Q Consensus 139 ~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~--~~~~-~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~ 211 (331)
-+-+.+.++++...++=.- |+.++|....+| .+++ +..|..|.+.= ---||+|.|+...+.-+..+
T Consensus 157 ---a~~~ei~~av~~~r~~g~~---~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l~Av 225 (347)
T COG2089 157 ---ATIEEIEEAVAILRENGNP---DIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPLAAV 225 (347)
T ss_pred ---ccHHHHHHHHHHHHhcCCC---CeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHHHHHH
Confidence 4577788888776655442 999999866543 3332 33444444332 23499999997765555443
No 107
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=56.32 E-value=1.8e+02 Score=27.46 Aligned_cols=83 Identities=14% Similarity=0.156 Sum_probs=55.3
Q ss_pred ccEEEeccCCCCChHHHHHHHHHHHHcCcee-EEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHH
Q 020098 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (331)
Q Consensus 163 iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~-~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~ 241 (331)
.|+.++..|-+ .+-++.+.+|++...|. ..|=+.++...+.++++. ...+++|+...-.-.-.+-..+.+.
T Consensus 197 ~~~~~iEeP~~---~~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~-----~a~d~i~~d~~~~GGit~~~~i~~~ 268 (341)
T cd03327 197 YELRWIEEPLI---PDDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEG-----RAVDILQPDVNWVGGITELKKIAAL 268 (341)
T ss_pred cCCccccCCCC---ccCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHc-----CCCCEEecCccccCCHHHHHHHHHH
Confidence 35556665543 22366777788877665 666677788888888654 3577788776544321222258999
Q ss_pred HHHcCCeEEEcc
Q 020098 242 CDELGITLIAYC 253 (331)
Q Consensus 242 ~~~~gi~v~a~s 253 (331)
|+++|+.+..++
T Consensus 269 A~~~g~~~~~h~ 280 (341)
T cd03327 269 AEAYGVPVVPHA 280 (341)
T ss_pred HHHcCCeecccc
Confidence 999999988764
No 108
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=56.31 E-value=1.6e+02 Score=26.73 Aligned_cols=128 Identities=16% Similarity=0.077 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECCcCcCCC-CC----CCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHH
Q 020098 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSR-AS----FGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQS 146 (331)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g-~~----~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~ 146 (331)
.+.++..++++.-.+.||..++....-+.+ .+ +-....++.+.+..+..+ ..++.+..-. .....+.
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~----~~~~~~~~~~----~~~~~~~ 90 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALK----QAKLGVLLLP----GIGTVDD 90 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhcc----CCEEEEEecC----CccCHHH
Confidence 455888889999899999999987321100 00 000113556655544433 3344332211 1112333
Q ss_pred HHHHHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEee---cCcHHHHHHHHHHHHhcC
Q 020098 147 VLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVS---NYSEKRLRNAYEKLKKRG 216 (331)
Q Consensus 147 i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs---~~~~~~l~~~~~~~~~~~ 216 (331)
++..++ .|+|.+-++.--+ +...+.+.++.+++.|+--.+.++ .++++.+.++.+.+...|
T Consensus 91 ----i~~a~~-~g~~~iri~~~~s----~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G 154 (263)
T cd07943 91 ----LKMAAD-LGVDVVRVATHCT----EADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYG 154 (263)
T ss_pred ----HHHHHH-cCCCEEEEEechh----hHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcC
Confidence 344333 3666655543211 234566677777777765444442 245666666655554444
No 109
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=56.15 E-value=1.1e+02 Score=27.94 Aligned_cols=66 Identities=18% Similarity=0.219 Sum_probs=45.6
Q ss_pred HHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHh
Q 020098 78 KAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFR 157 (331)
Q Consensus 78 ~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~ 157 (331)
.+.++.|++.|=-.|=.+.+||| =++.+.++.... ..+.+..+- .....+.+-+.+..++
T Consensus 110 ~e~l~~a~~~g~gvIl~t~H~Gn---------wE~~~~~l~~~~-----~~~~~i~~~------~~n~~~~~~~~~~R~~ 169 (295)
T PF03279_consen 110 EEHLEAALAEGRGVILLTGHFGN---------WELAGRALARRG-----PPVAVIYRP------QKNPYIDRLLNKLRER 169 (295)
T ss_pred HHHHHHHHhcCCCCEEeCcCcCh---------HHHHHHHHHhhC-----CceEEEecC------CccHhHHHHHHHHHHh
Confidence 46677888888777778889998 778888888765 355555553 2245566666777777
Q ss_pred hCCCcc
Q 020098 158 LGLSSV 163 (331)
Q Consensus 158 Lg~d~i 163 (331)
.|.+.+
T Consensus 170 ~g~~~i 175 (295)
T PF03279_consen 170 FGIELI 175 (295)
T ss_pred cCCeEe
Confidence 775543
No 110
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=55.95 E-value=1.8e+02 Score=27.29 Aligned_cols=154 Identities=12% Similarity=0.035 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 020098 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (331)
Q Consensus 74 ~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~ 153 (331)
.++..+.+....+.|++.|=.-- +. .. +.-.=++++... +.-++.|=.- ...+.+... .
T Consensus 133 ~~~~~~~a~~~~~~Gf~~~KiKv--~~-~~------d~~~v~~vr~~~---~~~~l~vDaN-----~~~~~~~a~-~--- 191 (324)
T TIGR01928 133 DEQMLKQIESLKATGYKRIKLKI--TP-QI------MHQLVKLRRLRF---PQIPLVIDAN-----ESYDLQDFP-R--- 191 (324)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEe--CC-ch------hHHHHHHHHHhC---CCCcEEEECC-----CCCCHHHHH-H---
Confidence 35566777778899999874321 11 11 333334444432 1123333332 224454431 1
Q ss_pred HHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCcee-EEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccC
Q 020098 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (331)
Q Consensus 154 sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~-~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~ 232 (331)
+++|. ..++.++..|-. .+-++.+.+++++-.+. ..|=|.++.+.+..+++. ...+++|+...-+-.-
T Consensus 192 -~~~l~--~~~~~~iEeP~~---~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~-----~~~dvi~~d~~~~GGi 260 (324)
T TIGR01928 192 -LKELD--RYQLLYIEEPFK---IDDLSMLDELAKGTITPICLDESITSLDDARNLIEL-----GNVKVINIKPGRLGGL 260 (324)
T ss_pred -HHHHh--hCCCcEEECCCC---hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHc-----CCCCEEEeCcchhcCH
Confidence 33333 235666666642 33467788888876664 667778888888888654 3577777766543221
Q ss_pred ccccchhHHHHHcCCeEEEcccCcccc
Q 020098 233 PEENGVKAACDELGITLIAYCPIAQGA 259 (331)
Q Consensus 233 ~~~~~~l~~~~~~gi~v~a~s~l~~G~ 259 (331)
.+-..+...|+++||.++..+.+..|+
T Consensus 261 t~~~~~~~~A~~~gi~~~~~~~~es~i 287 (324)
T TIGR01928 261 TEVQKAIETCREHGAKVWIGGMLETGI 287 (324)
T ss_pred HHHHHHHHHHHHcCCeEEEcceEcccH
Confidence 111248999999999999877666654
No 111
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=55.85 E-value=1.5e+02 Score=26.36 Aligned_cols=179 Identities=9% Similarity=0.041 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 020098 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (331)
Q Consensus 75 ~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~s 154 (331)
....+++.+|.+.|+..|=.+++...... ... ....++. =+++...-+. ....+.+.. .
T Consensus 16 ~~~~e~i~~A~~~Gl~~i~itdH~~~~~~-----~~~-~~~~~~~-------i~Il~GiEi~----~~~~~~~~~----~ 74 (237)
T PRK00912 16 DTVLRLISEASHLGYSGIALSNHSDKYPE-----SKP-ELEDLLG-------FEIFRGVEIV----ASNPSKLRG----L 74 (237)
T ss_pred chHHHHHHHHHHCCCCEEEEecCcccccc-----hhH-HHHHhcC-------CcEEeeEEEe----cCCHHHHHH----H
Confidence 57788999999999998877666432100 011 1112211 1222222221 133443333 3
Q ss_pred HHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecC---cHHHHHHHHHHHHhcCCCeeeeeeccccccc
Q 020098 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 231 (331)
Q Consensus 155 L~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~---~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~ 231 (331)
+++. .+.+|++.+| |. .+.+. ..+.+.+.|.-||--.. ....-+.+++.+...+..+.+ +++.+..
T Consensus 75 ~~~~-~~~~d~v~v~-~~---~~~~~---~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~gv~lEI---n~s~~~~ 143 (237)
T PRK00912 75 VGKF-RKKVDVLAVH-GG---DEKVN---RAACENPRVDILSHPYTKRKDSGINHVLAKEAARNNVAIEF---NLRDILK 143 (237)
T ss_pred HHhc-cCcccEEEEe-CC---CHHHH---HHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCCeEEEE---EchHhhh
Confidence 3332 2357888888 22 12222 35788888887776532 111123444445555544443 4443321
Q ss_pred Cc-c--------ccchhHHHHHcCCeEEEcccCccccccCCCCCCCCCCCCCCCccchhHHhhHHHHHHHHHHHHHhcCC
Q 020098 232 KP-E--------ENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSK 302 (331)
Q Consensus 232 ~~-~--------~~~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~ 302 (331)
.. . ...++..|++.|+.++.-|--.. |. .+..+. ....++++.|.
T Consensus 144 ~~~~~r~~~~~~~~~~~~~~~~~g~piiisSdAh~------------~~----~l~~~~----------~~~~l~~~~Gl 197 (237)
T PRK00912 144 SRGGRRARTLSNFRDNLALARKYDFPLVLTSGAMS------------CY----DLRSPR----------EMIALAELFGM 197 (237)
T ss_pred hcccHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCc------------cc----ccCCHH----------HHHHHHHHcCC
Confidence 11 0 01489999999988765322111 00 112222 67788888888
Q ss_pred CHHHHHHHh
Q 020098 303 TSTQNSPCM 311 (331)
Q Consensus 303 s~~qval~~ 311 (331)
+..++--++
T Consensus 198 ~~~~~~~~~ 206 (237)
T PRK00912 198 EEDEALKAL 206 (237)
T ss_pred CHHHHHHHH
Confidence 877765543
No 112
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=55.70 E-value=1.7e+02 Score=26.86 Aligned_cols=109 Identities=13% Similarity=0.058 Sum_probs=54.6
Q ss_pred CchhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHH
Q 020098 69 WDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL 148 (331)
Q Consensus 69 ~~~~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~ 148 (331)
.+.++.+...+.++..++.|++-|=....-|-+.+-...+=.+++-.+++.... |-.+++. ++ ..+.+...
T Consensus 16 dg~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~---~~~vi~g--v~----~~st~~~i 86 (289)
T PF00701_consen 16 DGSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAG---RVPVIAG--VG----ANSTEEAI 86 (289)
T ss_dssp TSSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTT---SSEEEEE--EE----SSSHHHHH
T ss_pred CcCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccC---ceEEEec--Cc----chhHHHHH
Confidence 356888999999999999999976654444332221111223344444444431 3344444 43 23444444
Q ss_pred HHHHHHHHhhCCCcccEEEeccCCC--CChHHHHHHHHHHHHcC
Q 020098 149 AALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQG 190 (331)
Q Consensus 149 ~~v~~sL~~Lg~d~iDl~~lh~p~~--~~~~~~~~~L~~l~~~G 190 (331)
+..+.. +.+|. |.+++..|-. ...+++.+.++++-+..
T Consensus 87 ~~a~~a-~~~Ga---d~v~v~~P~~~~~s~~~l~~y~~~ia~~~ 126 (289)
T PF00701_consen 87 ELARHA-QDAGA---DAVLVIPPYYFKPSQEELIDYFRAIADAT 126 (289)
T ss_dssp HHHHHH-HHTT----SEEEEEESTSSSCCHHHHHHHHHHHHHHS
T ss_pred HHHHHH-hhcCc---eEEEEeccccccchhhHHHHHHHHHHhhc
Confidence 443332 45664 4444443432 23455555555555444
No 113
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=55.62 E-value=1.1e+02 Score=28.59 Aligned_cols=96 Identities=15% Similarity=0.147 Sum_probs=65.6
Q ss_pred HHHHhhCCCcccEEEeccCCC------CChHHHHHHHHHHHHcCce-eEEEeecC---cHHHHHHHHHHHHhcCCCeeee
Q 020098 153 DSLFRLGLSSVELYQLHWAGI------WGNEGFIDGLGDAVEQGLV-KAVGVSNY---SEKRLRNAYEKLKKRGIPLASN 222 (331)
Q Consensus 153 ~sL~~Lg~d~iDl~~lh~p~~------~~~~~~~~~L~~l~~~G~i-~~iGvs~~---~~~~l~~~~~~~~~~~~~~~~~ 222 (331)
...++.| .|++.||-... .+.+|..+.|+++.+.=+| --||=|+. +++.++++.+.++- -+.-.-
T Consensus 158 k~Vk~fg---admvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEG--eRclLa 232 (403)
T COG2069 158 KCVKKFG---ADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEG--ERCLLA 232 (403)
T ss_pred HHHHHhC---CceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcC--ceEEee
Confidence 3445677 57777875332 5678999999999998777 46888876 47788888776542 222222
Q ss_pred eecccccccCccccchhHHHHHcCCeEEEcccCccc
Q 020098 223 QVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (331)
Q Consensus 223 q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G 258 (331)
..+.++ .-+ .+.+++.++|=.|++|+++.-+
T Consensus 233 Sanldl---Dy~--~ia~AA~ky~H~VLswt~~D~N 263 (403)
T COG2069 233 SANLDL---DYE--RIAEAALKYDHVVLSWTQMDVN 263 (403)
T ss_pred cccccc---CHH--HHHHHHHhcCceEEEeeccChH
Confidence 222222 112 4899999999999999998754
No 114
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=54.89 E-value=2e+02 Score=27.88 Aligned_cols=83 Identities=11% Similarity=-0.033 Sum_probs=56.7
Q ss_pred cEEEeccCCCCChHHHHHHHHHHHHcCcee-EEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHHH
Q 020098 164 ELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAAC 242 (331)
Q Consensus 164 Dl~~lh~p~~~~~~~~~~~L~~l~~~G~i~-~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~ 242 (331)
++.++..|-. -++.+.+|++...+. ..|-|.++.+++.++++. ...+++|....-.-.-.+-..+.+.|
T Consensus 239 ~l~~iEeP~~-----d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~-----~avdil~~d~~~~GGit~~~kia~~A 308 (395)
T cd03323 239 VLAYLEDPCG-----GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQL-----NAVDIPLADHHFWGGMRGSVRVAQVC 308 (395)
T ss_pred CCCEEECCCC-----CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHc-----CCCcEEeeccccccCHHHHHHHHHHH
Confidence 6667777653 377888888887664 566666777788777654 35777777765433212222589999
Q ss_pred HHcCCeEEEcccCc
Q 020098 243 DELGITLIAYCPIA 256 (331)
Q Consensus 243 ~~~gi~v~a~s~l~ 256 (331)
+++||.+..++...
T Consensus 309 ~~~gi~~~~h~~~e 322 (395)
T cd03323 309 ETWGLGWGMHSNNH 322 (395)
T ss_pred HHcCCeEEEecCcc
Confidence 99999999887653
No 115
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=54.35 E-value=14 Score=27.29 Aligned_cols=28 Identities=7% Similarity=0.073 Sum_probs=23.9
Q ss_pred HhhHHHHHHHHHHHHHhcCCCHHHHHHH
Q 020098 283 LRNLQPLLNRIKELGENYSKTSTQNSPC 310 (331)
Q Consensus 283 ~~~~~~~~~~l~~la~~~g~s~~qval~ 310 (331)
.++..+.+.+|.++|++.|++..+++.=
T Consensus 47 P~~V~~sl~kL~~La~~N~v~feeLc~Y 74 (82)
T PF11020_consen 47 PEKVMDSLSKLYKLAKENNVSFEELCVY 74 (82)
T ss_pred CHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 3567888899999999999999998753
No 116
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=53.75 E-value=1.6e+02 Score=29.63 Aligned_cols=106 Identities=17% Similarity=0.109 Sum_probs=64.4
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCC--hHHHHHHHHHHH
Q 020098 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG--NEGFIDGLGDAV 187 (331)
Q Consensus 110 E~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~--~~~~~~~L~~l~ 187 (331)
++-+-++|+...++.+.+-++|.+-+ ..+-|-..++...+.++.+.++++.++.|.... ....-.+|+.++
T Consensus 70 ~~~L~~aI~~~~~~~~P~~I~V~sTC-------~selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~~~al~~lv 142 (511)
T TIGR01278 70 QTRLVDTVRRVDDRFKPDLIVVTPSC-------TSSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAADRTLTQLV 142 (511)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCC-------hHHHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHHHHHHHHHH
Confidence 77888888776543334556666655 245555556666666665568899999887622 122222222222
Q ss_pred --------------HcCceeEEEeecC---cHHHHHHHHHHHHhcCCCeeee
Q 020098 188 --------------EQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPLASN 222 (331)
Q Consensus 188 --------------~~G~i~~iGvs~~---~~~~l~~~~~~~~~~~~~~~~~ 222 (331)
+.++|.-||.++. .+..+.++.+.++..|+.+.++
T Consensus 143 ~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v 194 (511)
T TIGR01278 143 RRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVV 194 (511)
T ss_pred HHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 2456889998763 4566677777777777665443
No 117
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=53.74 E-value=1.8e+02 Score=26.71 Aligned_cols=128 Identities=17% Similarity=0.202 Sum_probs=76.0
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 020098 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (331)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~ 150 (331)
..+.++..++++.+.+.|+..|.-+ | |+-.--..-.+++. .+++.+ -.++.|+|..- . + ..
T Consensus 39 ~ls~eei~~~i~~~~~~gi~~I~~t---G-GEPll~~~l~~iv~-~l~~~g----~~~v~i~TNG~-----l----l-~~ 99 (302)
T TIGR02668 39 ELSPEEIERIVRVASEFGVRKVKIT---G-GEPLLRKDLIEIIR-RIKDYG----IKDVSMTTNGI-----L----L-EK 99 (302)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEE---C-cccccccCHHHHHH-HHHhCC----CceEEEEcCch-----H----H-HH
Confidence 4677889999999999999887643 2 21100001122222 233322 13677777541 1 1 22
Q ss_pred HHHHHHhhCCCcccEEEeccCCC---------CChHHHHHHHHHHHHcCc----eeEEEeecCcHHHHHHHHHHHHhcCC
Q 020098 151 LKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGL----VKAVGVSNYSEKRLRNAYEKLKKRGI 217 (331)
Q Consensus 151 v~~sL~~Lg~d~iDl~~lh~p~~---------~~~~~~~~~L~~l~~~G~----i~~iGvs~~~~~~l~~~~~~~~~~~~ 217 (331)
.-..|.+.|+++|- +-++..++ ...+.+++.++.+++.|. |..+.+.+.+.+.+.++++.+...++
T Consensus 100 ~~~~l~~~g~~~v~-iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~~~g~n~~ei~~~~~~~~~~g~ 178 (302)
T TIGR02668 100 LAKKLKEAGLDRVN-VSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMVVLKGINDNEIPDMVEFAAEGGA 178 (302)
T ss_pred HHHHHHHCCCCEEE-EEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCC
Confidence 33446666766554 33455432 236789999999999984 33455555778889999888877665
Q ss_pred C
Q 020098 218 P 218 (331)
Q Consensus 218 ~ 218 (331)
.
T Consensus 179 ~ 179 (302)
T TIGR02668 179 I 179 (302)
T ss_pred E
Confidence 4
No 118
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=53.53 E-value=41 Score=32.18 Aligned_cols=85 Identities=11% Similarity=-0.053 Sum_probs=57.8
Q ss_pred ccEEEeccCCCCChHHHHHHHHHHHHcCcee-EEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHH
Q 020098 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (331)
Q Consensus 163 iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~-~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~ 241 (331)
+++.++..|-+ .+-++.+.+|++...+. ..|=+.++...+..+++. ..++++|+...-+-.-.+-..+.+.
T Consensus 189 ~~l~~iEeP~~---~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~-----~a~di~~~d~~~~GGit~~~~ia~~ 260 (361)
T cd03322 189 YRLFWMEDPTP---AENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQE-----RLIDYIRTTVSHAGGITPARKIADL 260 (361)
T ss_pred cCCCEEECCCC---cccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHh-----CCCCEEecCccccCCHHHHHHHHHH
Confidence 46666666643 22377788888887664 667777888888888664 3577888776543221121258999
Q ss_pred HHHcCCeEEEcccC
Q 020098 242 CDELGITLIAYCPI 255 (331)
Q Consensus 242 ~~~~gi~v~a~s~l 255 (331)
|+++|+.+..++..
T Consensus 261 A~~~gi~~~~h~~~ 274 (361)
T cd03322 261 ASLYGVRTGWHGPT 274 (361)
T ss_pred HHHcCCeeeccCCC
Confidence 99999999876543
No 119
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=53.23 E-value=41 Score=29.62 Aligned_cols=66 Identities=21% Similarity=0.191 Sum_probs=42.1
Q ss_pred HHhhCCCcccEEEec-cCCCCChHHHHHHHHHHHHcCceeEEEee-cCcHHHHHHHHHHHHhcCCCeeeeeeccc
Q 020098 155 LFRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (331)
Q Consensus 155 L~~Lg~d~iDl~~lh-~p~~~~~~~~~~~L~~l~~~G~i~~iGvs-~~~~~~l~~~~~~~~~~~~~~~~~q~~~n 227 (331)
+..+|.|++=+.+.. .|...+.+.+-+....+ .+.+..+||. +-+++.+.++++. ..++++|++-+
T Consensus 19 ~~~~Gad~iGfI~~~~S~R~V~~~~a~~i~~~~--~~~i~~VgVf~~~~~~~i~~~~~~-----~~~d~vQLHg~ 86 (210)
T PRK01222 19 AAELGADAIGFVFYPKSPRYVSPEQAAELAAAL--PPFVKVVGVFVNASDEEIDEIVET-----VPLDLLQLHGD 86 (210)
T ss_pred HHHcCCCEEEEccCCCCCCcCCHHHHHHHHHhC--CCCCCEEEEEeCCCHHHHHHHHHh-----cCCCEEEECCC
Confidence 446899999987433 33333333333333322 3568889987 4578888888665 67899999753
No 120
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=53.21 E-value=1e+02 Score=26.71 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHCCCCeEEC
Q 020098 72 RKMKAAKAAFDTSLDNGITFFDT 94 (331)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gvn~~Dt 94 (331)
.+++.+.+++..+++.|+...|.
T Consensus 8 ~D~~~~~~~v~~~l~~g~~~~~i 30 (201)
T cd02070 8 GDEEETVELVKKALEAGIDPQDI 30 (201)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHH
Confidence 35688999999999999875553
No 121
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=53.10 E-value=51 Score=32.38 Aligned_cols=92 Identities=15% Similarity=0.141 Sum_probs=59.2
Q ss_pred HHhhCCCcccEEEeccCCC--CChHHHHHHHHHHHHcCceeEEEeecCcHHHHHHHHHHHHhc---CCCeeeeeeccccc
Q 020098 155 LFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKR---GIPLASNQVNYSLI 229 (331)
Q Consensus 155 L~~Lg~d~iDl~~lh~p~~--~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~---~~~~~~~q~~~n~~ 229 (331)
++.+|++|. ++..|-. .... +-...+-+.|-+..+|..+.+++++++.++.++.. +-+|-+|-+ .++-
T Consensus 7 ~~~lgiryP---ii~gpMa~Giss~---eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~ 79 (418)
T cd04742 7 KEDYGLRYA---YVAGAMARGIASA---ELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPD 79 (418)
T ss_pred HHHhCCCcc---EECCcccCCCCCH---HHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCC
Confidence 466777764 2233221 1122 33445568899999999999999999999888763 345666543 3332
Q ss_pred ccCccccchhHHHHHcCCeEEEccc
Q 020098 230 YRKPEENGVKAACDELGITLIAYCP 254 (331)
Q Consensus 230 ~~~~~~~~~l~~~~~~gi~v~a~s~ 254 (331)
+...+ ..+++.|.++||.++..+.
T Consensus 80 ~~~~e-~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 80 EPELE-EGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred CchhH-HHHHHHHHHcCCCEEEecc
Confidence 22222 2589999999998876554
No 122
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=53.05 E-value=16 Score=25.59 Aligned_cols=22 Identities=9% Similarity=0.154 Sum_probs=20.0
Q ss_pred HHHHHHHhcCCCHHHHHHHhhh
Q 020098 292 RIKELGENYSKTSTQNSPCMSN 313 (331)
Q Consensus 292 ~l~~la~~~g~s~~qval~~~l 313 (331)
-+.+||+++|+++.++|..|..
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~ 36 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAE 36 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHH
Confidence 4889999999999999999974
No 123
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=52.62 E-value=96 Score=29.45 Aligned_cols=106 Identities=16% Similarity=0.220 Sum_probs=48.8
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcccEEEe--------c-cCCCCChHHHHHHHHHHHHcCceeEEEeecC-cHHHHHHHH
Q 020098 140 WRLGRQSVLAALKDSLFRLGLSSVELYQL--------H-WAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAY 209 (331)
Q Consensus 140 ~~~~~~~i~~~v~~sL~~Lg~d~iDl~~l--------h-~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~-~~~~l~~~~ 209 (331)
+.++.+.+. .+-+.|.+.|+++|.+-.. . .+...+..+.++.+.+..+.-++..+-+.+. +.+.++.+.
T Consensus 19 ~~f~~~~~~-~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~ 97 (333)
T TIGR03217 19 HQFTIEQVR-AIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAY 97 (333)
T ss_pred CcCCHHHHH-HHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHHH
Confidence 345555544 4455588889888888521 1 1211233333333333333222221211111 345554443
Q ss_pred HHHHhcCCCeeeeeecccccccCccccchhHHHHHcCCeEEEcc
Q 020098 210 EKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYC 253 (331)
Q Consensus 210 ~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s 253 (331)
..+ ++++.+..+.-+-... .+.+++++++|..+...-
T Consensus 98 ----~~g--vd~iri~~~~~e~d~~-~~~i~~ak~~G~~v~~~l 134 (333)
T TIGR03217 98 ----DAG--ARTVRVATHCTEADVS-EQHIGMARELGMDTVGFL 134 (333)
T ss_pred ----HCC--CCEEEEEeccchHHHH-HHHHHHHHHcCCeEEEEE
Confidence 233 3333333332221111 148888888888776543
No 124
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=52.52 E-value=2.5e+02 Score=27.91 Aligned_cols=141 Identities=21% Similarity=0.129 Sum_probs=79.7
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEE--------CCcCcCCCCCCCCCchHHHHHHHH--HhccCCCCCCcEEEEecCCCCCC
Q 020098 71 DRKMKAAKAAFDTSLDNGITFFD--------TAEVYGSRASFGAINSETLLGRFI--KERKQRDPEVEVTVATKFAALPW 140 (331)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gvn~~D--------ta~~Yg~g~~~~~~~sE~~iG~~l--~~~~~~~~R~~~~i~tK~~~~~~ 140 (331)
+..-+...++++.|+|+|---+- |+..|.++...-+. +++.+-++ ... +..+.-+|..
T Consensus 178 eaelaaMaallreAlEaGalGmS~~~~~~~~tgd~~p~~~l~~~t--~el~~la~~va~a-----g~~iLqst~d----- 245 (579)
T COG3653 178 EAELAAMAALLREALEAGALGMSMDAAIDKLTGDRYPSRALPFAT--WELRRLAISVARA-----GGRILQSTHD----- 245 (579)
T ss_pred hHHHHHHHHHHHHHHhccccccchhhhcccccccccCCcccCcch--HHHHHHHHHHHHh-----cCceeEeecc-----
Confidence 33445678899999999876555 77778775442222 44444444 444 3555555543
Q ss_pred CCCHHHHHHHHHHHHHhhC-CCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecCcHHHHHHHHHHHHhcCCC-
Q 020098 141 RLGRQSVLAALKDSLFRLG-LSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIP- 218 (331)
Q Consensus 141 ~~~~~~i~~~v~~sL~~Lg-~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~- 218 (331)
.-....+...++++-+.-| ...+-+.+.|..+. | -..+|++.+....++++ +.+|.+
T Consensus 246 ~~egaa~L~~l~~a~ri~~R~~~vr~v~s~~a~a----------------g-~~n~~~a~~~lgl~~ka----q~~G~pV 304 (579)
T COG3653 246 RDEGAAALEALLEASRIGNRRKGVRMVMSHSADA----------------G-SMNWGVAVFGLGLIEKA----QLLGSPV 304 (579)
T ss_pred ccchHHHHHHHHHHHHhcCcccCceEEEeccccc----------------c-ccchhhhhhccchHHHH----HHhCCcc
Confidence 2346667777777777773 44678888887653 1 12345555554444443 333433
Q ss_pred -eeeeeecccccccCccccchhHHHHHcCCe
Q 020098 219 -LASNQVNYSLIYRKPEENGVKAACDELGIT 248 (331)
Q Consensus 219 -~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~ 248 (331)
+++.-...|++.... ++++.++.+.+
T Consensus 305 g~~~~p~~a~~ys~~~----~~p~~~e~g~~ 331 (579)
T COG3653 305 GFDHYPYTAELYSDGI----DLPVFEEFGAG 331 (579)
T ss_pred eeeecccccchhccCC----cchhhhhcccc
Confidence 444444444554443 55666666553
No 125
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=52.45 E-value=2.1e+02 Score=27.11 Aligned_cols=70 Identities=11% Similarity=-0.079 Sum_probs=52.7
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCC--CChHHHHHHHHHHHHcCceeEEEeecCcHHHHHHHHH
Q 020098 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYE 210 (331)
Q Consensus 140 ~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~--~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~ 210 (331)
..++.+.-.+-.+-+.+.+++++|-|=.+-.+.. .+..+++++.++|.++|..-. =+|+-++....++.+
T Consensus 145 g~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~-~yc~~d~~~a~~l~~ 216 (326)
T PRK11840 145 GCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVM-VYCSDDPIAAKRLED 216 (326)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHh
Confidence 4678887777777788888999998877755443 458899999999999998752 456667676666644
No 126
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=52.35 E-value=64 Score=26.56 Aligned_cols=61 Identities=11% Similarity=0.156 Sum_probs=45.1
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhh--CCCcccEEEeccCCC-CChHHHHHHHHHHHHc
Q 020098 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRL--GLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQ 189 (331)
Q Consensus 126 R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~L--g~d~iDl~~lh~p~~-~~~~~~~~~L~~l~~~ 189 (331)
|=.+.|+-|+|. ...+..|++.+.++++.. .....|++++..+.. .+..++.+.|..+.++
T Consensus 47 RlG~sVSKKvg~---AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 47 KVGITVSKKFGK---AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred eEEEEEeccccc---chhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 678899999874 577889999999998876 345689999988765 4455666666555544
No 127
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=52.17 E-value=1.1e+02 Score=26.97 Aligned_cols=77 Identities=16% Similarity=0.260 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 020098 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (331)
Q Consensus 73 ~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~ 152 (331)
++++.....+.+.++|..|+=|+..|+.+.+ ....-+.+.+.++ +. +..|... .-.+.+.....++
T Consensus 130 ~~~ei~~a~~ia~eaGADfvKTsTGf~~~ga--t~~dv~~m~~~v~--------~~--v~IKaaG--Girt~~~a~~~i~ 195 (211)
T TIGR00126 130 TDEEIRKACEICIDAGADFVKTSTGFGAGGA--TVEDVRLMRNTVG--------DT--IGVKASG--GVRTAEDAIAMIE 195 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCC--CHHHHHHHHHHhc--------cC--CeEEEeC--CCCCHHHHHHHHH
Confidence 3467778999999999999999999874322 0011133333332 22 2334322 2247888999999
Q ss_pred HHHHhhCCCcc
Q 020098 153 DSLFRLGLSSV 163 (331)
Q Consensus 153 ~sL~~Lg~d~i 163 (331)
.--.|+|+++.
T Consensus 196 aGa~riGts~~ 206 (211)
T TIGR00126 196 AGASRIGASAG 206 (211)
T ss_pred HhhHHhCcchH
Confidence 99999998753
No 128
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=51.96 E-value=2.2e+02 Score=27.19 Aligned_cols=83 Identities=13% Similarity=0.073 Sum_probs=56.1
Q ss_pred CChHHHHHHHHHHHHc-Cc---eeEEEee--cCcHHHHHHHHHHHHhcCCCeeeeeecccccccCccc-------cchhH
Q 020098 174 WGNEGFIDGLGDAVEQ-GL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-------NGVKA 240 (331)
Q Consensus 174 ~~~~~~~~~L~~l~~~-G~---i~~iGvs--~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~-------~~~l~ 240 (331)
++.+++.+++.++.+. |+ +.++=+. |.+.+.+.++.+.+. +.++.++-++||+....... ..+.+
T Consensus 223 ~~l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~--~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~ 300 (344)
T PRK14464 223 IAPEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLK--GKYAVMNLIPYNSVDGDAYRRPSGERIVAMAR 300 (344)
T ss_pred CCHHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHh--ccccccceecCCccCCCCccCCCHHHHHHHHH
Confidence 5788888888877644 42 1233222 668888888877654 35678888999986653322 13666
Q ss_pred HHHHcCCeEEEcccCccc
Q 020098 241 ACDELGITLIAYCPIAQG 258 (331)
Q Consensus 241 ~~~~~gi~v~a~s~l~~G 258 (331)
..+++||.+......+.-
T Consensus 301 ~L~~~gi~~tiR~~~G~d 318 (344)
T PRK14464 301 YLHRRGVLTKVRNSAGQD 318 (344)
T ss_pred HHHHCCceEEEECCCCCc
Confidence 778899999998887753
No 129
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=51.89 E-value=1e+02 Score=29.63 Aligned_cols=91 Identities=11% Similarity=0.060 Sum_probs=61.8
Q ss_pred EEeccCCC------------CChHHHHHHHHHHHHcC-c---eeEEEe--ecCcHHHHHHHHHHHHhcCCCeeeeeeccc
Q 020098 166 YQLHWAGI------------WGNEGFIDGLGDAVEQG-L---VKAVGV--SNYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (331)
Q Consensus 166 ~~lh~p~~------------~~~~~~~~~L~~l~~~G-~---i~~iGv--s~~~~~~l~~~~~~~~~~~~~~~~~q~~~n 227 (331)
+-||.++. ++.++++++++++.+.+ + |+++=+ -|.+.+.++++.+.++. .+..++-++||
T Consensus 223 iSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~--l~~~VnLIPyn 300 (356)
T PRK14455 223 ISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKG--IKCHVNLIPVN 300 (356)
T ss_pred eccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhc--CCCcEEEEecC
Confidence 66787765 24588999999997753 2 334433 35567888888777653 34667788999
Q ss_pred ccccCccc-------cchhHHHHHcCCeEEEcccCccc
Q 020098 228 LIYRKPEE-------NGVKAACDELGITLIAYCPIAQG 258 (331)
Q Consensus 228 ~~~~~~~~-------~~~l~~~~~~gi~v~a~s~l~~G 258 (331)
++...... ..+.+.++++|+.+......+.-
T Consensus 301 p~~~~ky~~ps~e~l~~f~~~L~~~gi~v~ir~~~g~d 338 (356)
T PRK14455 301 PVPERDYVRTPKEDIFAFEDTLKKNGVNCTIRREHGTD 338 (356)
T ss_pred cCCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCcc
Confidence 87643221 13566688999999988776653
No 130
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=51.80 E-value=90 Score=30.02 Aligned_cols=104 Identities=19% Similarity=0.245 Sum_probs=59.3
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCC-----CChHHHHHHHH
Q 020098 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-----WGNEGFIDGLG 184 (331)
Q Consensus 110 E~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~-----~~~~~~~~~L~ 184 (331)
|+-+-++++...+..+++-++|.|=+-. ..-.+.+..-+++.-++.+. .++.+|-+.. .+.+.++.+|-
T Consensus 59 ~~kL~~~i~~~~~~~~P~~i~v~~sC~~---~iIGdD~~~v~~~~~~~~~~---~vi~v~~~gf~~~~~~G~~~a~~~l~ 132 (398)
T PF00148_consen 59 EEKLREAIKEIAEKYKPKAIFVVTSCVP---EIIGDDIEAVARELQEEYGI---PVIPVHTPGFSGSYSQGYDAALRALA 132 (398)
T ss_dssp HHHHHHHHHHHHHHHSTSEEEEEE-HHH---HHTTTTHHHHHHHHHHHHSS---EEEEEE--TTSSSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCCcEEEEECCCCH---HHhCCCHHHHHHHhhcccCC---cEEEEECCCccCCccchHHHHHHHHH
Confidence 7777777766543322577888877632 11122233333333344443 7888887665 12455566555
Q ss_pred HHH-H------cCceeEEEeecCcHHHHHHHHHHHHhcCCCe
Q 020098 185 DAV-E------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPL 219 (331)
Q Consensus 185 ~l~-~------~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~ 219 (331)
+.. + .+.|.-||.++.....+.++.+..+..|+..
T Consensus 133 ~~~~~~~~~~~~~~VNiiG~~~~~~~d~~el~~lL~~~Gi~v 174 (398)
T PF00148_consen 133 EQLVKPPEEKKPRSVNIIGGSPLGPGDLEELKRLLEELGIEV 174 (398)
T ss_dssp HHHTTGTTTTSSSEEEEEEESTBTHHHHHHHHHHHHHTTEEE
T ss_pred hhcccccccCCCCceEEecCcCCCcccHHHHHHHHHHCCCce
Confidence 444 2 2678899999887667777777777777643
No 131
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=51.36 E-value=72 Score=29.94 Aligned_cols=72 Identities=11% Similarity=0.076 Sum_probs=42.2
Q ss_pred chhHHHHHcCCeEEEcccCcccccc-CCCCCCC-------CCCC--------CCCCccchhHHhhHHHHHHHHHHHHHhc
Q 020098 237 GVKAACDELGITLIAYCPIAQGALT-GKYTPQN-------PPTG--------PRGRIYTAEYLRNLQPLLNRIKELGENY 300 (331)
Q Consensus 237 ~~l~~~~~~gi~v~a~s~l~~G~L~-~~~~~~~-------~p~~--------~~~~~~~~~~~~~~~~~~~~l~~la~~~ 300 (331)
.+++.|+++||.|.||-.++...-. +...... .+.. ....+++|...+-..-.+..+.+++++|
T Consensus 74 ~~I~eaHkrGlevHAW~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Y 153 (311)
T PF02638_consen 74 FMIEEAHKRGLEVHAWFRVGFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNY 153 (311)
T ss_pred HHHHHHHHcCCEEEEEEEeecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcC
Confidence 4899999999999999733221100 0010111 1111 1112455655555666677999999999
Q ss_pred CCCHHHHH
Q 020098 301 SKTSTQNS 308 (331)
Q Consensus 301 g~s~~qva 308 (331)
.++-.++-
T Consensus 154 dvDGIhlD 161 (311)
T PF02638_consen 154 DVDGIHLD 161 (311)
T ss_pred CCCeEEec
Confidence 87766654
No 132
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=51.12 E-value=2.4e+02 Score=27.23 Aligned_cols=104 Identities=22% Similarity=0.209 Sum_probs=58.5
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCC------hHHHHHHH
Q 020098 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG------NEGFIDGL 183 (331)
Q Consensus 110 E~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~------~~~~~~~L 183 (331)
|+-+-++|+......+.+-++|.|=+-. ..-.+.+..-+++.-++.+ +.++.+|-|.... .+.++++|
T Consensus 72 ~~~L~~~i~~~~~~~~P~~i~v~~tC~~---~~iGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~~~~~G~~~a~~al 145 (406)
T cd01967 72 EKKLKKAIKEAYERFPPKAIFVYSTCPT---GLIGDDIEAVAKEASKELG---IPVIPVNCEGFRGVSQSLGHHIANDAI 145 (406)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCCch---hhhccCHHHHHHHHHHhhC---CCEEEEeCCCeeCCcccHHHHHHHHHH
Confidence 7788888877654333566777777642 1112223333333223333 7899999876522 34455554
Q ss_pred HHHH---------HcCceeEEEeecCcHHHHHHHHHHHHhcCCCee
Q 020098 184 GDAV---------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (331)
Q Consensus 184 ~~l~---------~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~ 220 (331)
-+.. +.+.|.-||..++. ..+.++.+..+..|+.+.
T Consensus 146 ~~~l~~~~~~~~~~~~~VNiig~~~~~-~d~~el~~lL~~~Gi~~~ 190 (406)
T cd01967 146 LDHLVGTKEPEEKTPYDVNIIGEYNIG-GDAWVIKPLLEELGIRVN 190 (406)
T ss_pred HHHhcCCCCcCCCCCCeEEEEeccccc-hhHHHHHHHHHHcCCEEE
Confidence 4433 23568889987663 345555555666666543
No 133
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=51.09 E-value=1.7e+02 Score=26.60 Aligned_cols=108 Identities=14% Similarity=0.091 Sum_probs=59.0
Q ss_pred HHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCC-------CCCCHHHHHHHH
Q 020098 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALP-------WRLGRQSVLAAL 151 (331)
Q Consensus 79 ~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~-------~~~~~~~i~~~v 151 (331)
+++++|++.|..+|.--..... ...+.+.++++. -.+++...-+... +..-.+.+.+.+
T Consensus 87 ~v~e~al~~G~~iINdisg~~~---------~~~~~~l~~~~~-----~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~ 152 (257)
T cd00739 87 EVARAALEAGADIINDVSGGSD---------DPAMLEVAAEYG-----APLVLMHMRGTPKTMQENPYYEDVVDEVLSFL 152 (257)
T ss_pred HHHHHHHHhCCCEEEeCCCCCC---------ChHHHHHHHHcC-----CCEEEECCCCCCcccccCCCcccHHHHHHHHH
Confidence 4678888889888874333221 133456666653 4566654433210 011123444445
Q ss_pred HHH---HHhhCCC----cccEEEeccCCC-CChHHHHHHHHHHHHcCceeEEEeecCc
Q 020098 152 KDS---LFRLGLS----SVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKAVGVSNYS 201 (331)
Q Consensus 152 ~~s---L~~Lg~d----~iDl~~lh~p~~-~~~~~~~~~L~~l~~~G~i~~iGvs~~~ 201 (331)
++. +++.|++ ++|-..- .... ...-++++.++.+++.|.=-.+|+||-+
T Consensus 153 ~~~i~~~~~~Gi~~~~Ii~DPg~g-f~ks~~~~~~~l~~i~~l~~~~~pil~G~SrkS 209 (257)
T cd00739 153 EARLEAAESAGVARNRIILDPGIG-FGKTPEHNLELLRRLDELKQLGLPVLVGASRKS 209 (257)
T ss_pred HHHHHHHHHcCCCHHHEEEecCCC-cccCHHHHHHHHHHHHHHHhCCCcEEEEecccH
Confidence 543 4455776 4444221 1110 1245678888888888877789999864
No 134
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=50.74 E-value=1.3e+02 Score=29.54 Aligned_cols=61 Identities=20% Similarity=0.257 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcccEEEec-cCCC-----------CC-hH---HHHHHH-HHHHHcCceeEEEeecCcH
Q 020098 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLH-WAGI-----------WG-NE---GFIDGL-GDAVEQGLVKAVGVSNYSE 202 (331)
Q Consensus 140 ~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh-~p~~-----------~~-~~---~~~~~L-~~l~~~G~i~~iGvs~~~~ 202 (331)
...+.+.+.+.+++.++ |+.|+|.+|.+- -|.. .+ .+ +.++.. +.|.+.|. +++|+|||.-
T Consensus 199 P~QT~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisnfa~ 276 (416)
T COG0635 199 PGQTLESLKEDLEQALE-LGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQYEISNFAK 276 (416)
T ss_pred CCCCHHHHHHHHHHHHh-CCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeechhcC
Confidence 45778888888887764 679999999884 3332 11 12 344444 44556676 8999999964
No 135
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=50.53 E-value=2.3e+02 Score=26.92 Aligned_cols=24 Identities=8% Similarity=0.169 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECC
Q 020098 72 RKMKAAKAAFDTSLDNGITFFDTA 95 (331)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gvn~~Dta 95 (331)
.+.++..++++..-++||..|+.+
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 455888999999999999999985
No 136
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=49.05 E-value=2.8e+02 Score=27.51 Aligned_cols=111 Identities=13% Similarity=0.089 Sum_probs=60.1
Q ss_pred HHHHHHHHHhccCCCC-CCcEEEEecCCCCCCCCCHHHHHHHHHHHHH-hhCCCcccEEEeccCCCCC--hHHHHHHHHH
Q 020098 110 ETLLGRFIKERKQRDP-EVEVTVATKFAALPWRLGRQSVLAALKDSLF-RLGLSSVELYQLHWAGIWG--NEGFIDGLGD 185 (331)
Q Consensus 110 E~~iG~~l~~~~~~~~-R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~-~Lg~d~iDl~~lh~p~~~~--~~~~~~~L~~ 185 (331)
|+-+-++|+...+..+ .+-++|.|-+...-..-+-+.+.+.++.-++ +..--.+.++.+|.|+... ..+...+++.
T Consensus 71 ~~~L~~~I~~~~~~~~~p~~I~V~tTC~~eiIGDDi~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~Gs~~~G~~~a~~a 150 (454)
T cd01973 71 AKRVEEGVLVLARRYPDLRVIPIITTCSTEIIGDDIEGVIRKLNEALKEEFPDREVHLIPVHTPSFKGSMVTGYDEAVRS 150 (454)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEECCchHhhhccCHHHHHHHHHhhhhhccCCCCCeEEEeeCCCcCCCHHHHHHHHHHH
Confidence 7888888887654432 3557788777431122233333333333221 1110137888999888732 2233333333
Q ss_pred HHH--------cCceeEEEeecCcHHHHHHHHHHHHhcCCCeee
Q 020098 186 AVE--------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (331)
Q Consensus 186 l~~--------~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~ 221 (331)
+.+ +++|.-||-.+ ++..++++.+.++..|+.+.+
T Consensus 151 li~~~~~~~~~~~~VNii~~~~-~~~D~~ei~~lL~~~Gl~v~~ 193 (454)
T cd01973 151 VVKTIAKKGAPSGKLNVFTGWV-NPGDVVELKHYLSEMDVEANI 193 (454)
T ss_pred HHHHhcccCCCCCcEEEECCCC-ChHHHHHHHHHHHHcCCCEEE
Confidence 332 46788887443 355667776667777765543
No 137
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=48.95 E-value=4.5e+02 Score=29.83 Aligned_cols=201 Identities=8% Similarity=0.020 Sum_probs=108.6
Q ss_pred hHHHHHHHHHHHHHCC-CCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCC-CCC-cEEEEecCCCC-----------
Q 020098 73 KMKAAKAAFDTSLDNG-ITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRD-PEV-EVTVATKFAAL----------- 138 (331)
Q Consensus 73 ~~~~~~~~l~~A~~~G-vn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~-~R~-~~~i~tK~~~~----------- 138 (331)
++++..+.+...++.| +|++=-+..-++-+ -+.+.++++...-+. +.. ...++|-....
T Consensus 290 tPe~~a~~~~~~~~~G~v~IIGGCCGTtPeH-------I~ala~~l~~~~p~~~~~~~~~~~~S~~~~~~~~~~~~~~~I 362 (1229)
T PRK09490 290 TPEEMAAQIGEFAESGFLNIVGGCCGTTPEH-------IAAIAEAVAGLPPRKLPEIPVACRLSGLEPLNIDDDSLFVNV 362 (1229)
T ss_pred CHHHHHHHHHHHHHcCCCCEEEecCCCCHHH-------HHHHHHHHhcCCCCCCCCcCcceeeecceEEeecCCCccccc
Confidence 4577778899999999 89997666555422 456677776543211 001 11122222110
Q ss_pred --CCCC-CHHHHHH---------HHHHHHH--hhCCCcccEEEeccCCC--CChHHHHHHHHHHHHcC-ce--eEEEeec
Q 020098 139 --PWRL-GRQSVLA---------ALKDSLF--RLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQG-LV--KAVGVSN 199 (331)
Q Consensus 139 --~~~~-~~~~i~~---------~v~~sL~--~Lg~d~iDl~~lh~p~~--~~~~~~~~~L~~l~~~G-~i--~~iGvs~ 199 (331)
..+. ..+.+++ .++...+ +-|-+.||+- ++. .+.++.+..+..+.+.- .+ --|-+-+
T Consensus 363 GER~N~~G~k~~~~~i~~~d~~~al~~A~~qve~GA~iIDVn----~g~~~id~~eem~rvv~~i~~~~~~~~vPlsIDS 438 (1229)
T PRK09490 363 GERTNVTGSAKFARLIKEEDYDEALDVARQQVENGAQIIDIN----MDEGMLDSEAAMVRFLNLIASEPDIARVPIMIDS 438 (1229)
T ss_pred ccccchhccHHHHHHHHcCCHHHHHHHHHHHHHCCCCEEEEC----CCCCCCCHHHHHHHHHHHHHhhhccCCceEEEeC
Confidence 0011 1222222 2222222 3488999995 333 33444454444444321 11 2377888
Q ss_pred CcHHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHHHHHcCCeEEEcccCccccccCCCCCCCCCCCCCCCccc
Q 020098 200 YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYT 279 (331)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~ 279 (331)
+.++.++..++.+. .++.+|-+..--.+..-. .+++.|++.|..|+++.--..|.-
T Consensus 439 ~~~~ViEaaLk~~~---G~~IINSIs~~~~~~~~~--~~~~l~~kyga~vV~m~~de~G~~------------------- 494 (1229)
T PRK09490 439 SKWEVIEAGLKCIQ---GKGIVNSISLKEGEEKFI--EHARLVRRYGAAVVVMAFDEQGQA------------------- 494 (1229)
T ss_pred CcHHHHHHHHhhcC---CCCEEEeCCCCCCCccHH--HHHHHHHHhCCCEEEEecCCCCCC-------------------
Confidence 89999999977633 456665555432221111 489999999999999875544421
Q ss_pred hhHHhhHHHHHHHHHHHHH-hcCCCHHHHHH
Q 020098 280 AEYLRNLQPLLNRIKELGE-NYSKTSTQNSP 309 (331)
Q Consensus 280 ~~~~~~~~~~~~~l~~la~-~~g~s~~qval 309 (331)
.-.++-.+..+++-+.+. ++|+++..+.+
T Consensus 495 -~t~e~r~~ia~r~~~~~~~~~Gi~~~dIi~ 524 (1229)
T PRK09490 495 -DTRERKIEICKRAYDILTEEVGFPPEDIIF 524 (1229)
T ss_pred -CCHHHHHHHHHHHHHHHHHHcCCCHHHEEE
Confidence 112223334445555554 59988776543
No 138
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=48.80 E-value=1.7e+02 Score=27.98 Aligned_cols=134 Identities=19% Similarity=0.123 Sum_probs=78.1
Q ss_pred HHHHHHHHHhccCC----CCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCC------------
Q 020098 110 ETLLGRFIKERKQR----DPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI------------ 173 (331)
Q Consensus 110 E~~iG~~l~~~~~~----~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~------------ 173 (331)
-+.+-++++..... .....+.|+|-. . .+ .++ -|...+...+++ -||.+++
T Consensus 171 ~~~v~~~l~~l~~~~Gl~~~~r~itvsT~G------~-~~----~i~-~L~~~~l~~L~i-SLha~~~e~r~~i~p~~~~ 237 (354)
T PRK14460 171 LDEVMRSLRTLNNEKGLNFSPRRITVSTCG------I-EK----GLR-ELGESGLAFLAV-SLHAPNQELRERIMPKAAR 237 (354)
T ss_pred HHHHHHHHHHHhhhhccCCCCCeEEEECCC------C-hH----HHH-HHHhCCCcEEEE-eCCCCCHHHHHHhcCcccc
Confidence 34455666654311 012357777743 1 22 233 344555544443 5777665
Q ss_pred CChHHHHHHHHHHHHc-Cc---eeEEEee--cCcHHHHHHHHHHHHhcCCCeeeeeecccccccCccc-------cchhH
Q 020098 174 WGNEGFIDGLGDAVEQ-GL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-------NGVKA 240 (331)
Q Consensus 174 ~~~~~~~~~L~~l~~~-G~---i~~iGvs--~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~-------~~~l~ 240 (331)
++.+++++++.+...+ |+ |+++=+. |.+.+.++++.+.+.. .+..++-++||++...... ..+.+
T Consensus 238 ~~l~~ll~al~~~~~~~~~~v~iey~LI~GvNDs~ed~~~l~~~l~~--~~~~VnLIpyn~~~g~~y~~p~~e~v~~f~~ 315 (354)
T PRK14460 238 WPLDDLIAALKSYPLKTRERVTFEYLLLGGVNDSLEHARELVRLLSR--TKCKLNLIVYNPAEGLPYSAPTEERILAFEK 315 (354)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEEEEECCCCCCHHHHHHHHHHHhc--CCCcEEEEcCCCCCCCCCCCCCHHHHHHHHH
Confidence 3467888888876543 22 3333333 5567888888777654 3457788899987543321 13566
Q ss_pred HHHHcCCeEEEcccCccc
Q 020098 241 ACDELGITLIAYCPIAQG 258 (331)
Q Consensus 241 ~~~~~gi~v~a~s~l~~G 258 (331)
..+++|+.+......+.-
T Consensus 316 ~l~~~Gi~vtir~~~G~d 333 (354)
T PRK14460 316 YLWSKGITAIIRKSKGQD 333 (354)
T ss_pred HHHHCCCeEEEeCCCCCc
Confidence 778889999988777653
No 139
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=48.60 E-value=1.6e+02 Score=28.19 Aligned_cols=92 Identities=14% Similarity=0.094 Sum_probs=60.7
Q ss_pred EEEeccCCC------------CChHHHHHHHHHHHH-cCc---eeEEEee--cCcHHHHHHHHHHHHhcCCCeeeeeecc
Q 020098 165 LYQLHWAGI------------WGNEGFIDGLGDAVE-QGL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (331)
Q Consensus 165 l~~lh~p~~------------~~~~~~~~~L~~l~~-~G~---i~~iGvs--~~~~~~l~~~~~~~~~~~~~~~~~q~~~ 226 (331)
.+-||.+++ ++.+++++++.++.+ .|+ |+++=+. |.+.+++.++.+.++. +++.++-++|
T Consensus 218 aiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~--l~~~VnLIPy 295 (355)
T TIGR00048 218 AISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKG--TKCKVNLIPW 295 (355)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhc--CCCceEEEec
Confidence 377898874 236888888887654 443 3455444 4456888888776653 3567778899
Q ss_pred cccccCccc-------cchhHHHHHcCCeEEEcccCccc
Q 020098 227 SLIYRKPEE-------NGVKAACDELGITLIAYCPIAQG 258 (331)
Q Consensus 227 n~~~~~~~~-------~~~l~~~~~~gi~v~a~s~l~~G 258 (331)
|++...... ..+.++.+++|+.+......+.-
T Consensus 296 np~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~d 334 (355)
T TIGR00048 296 NPFPEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGDD 334 (355)
T ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcc
Confidence 987643321 12556677889999998777653
No 140
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=48.57 E-value=91 Score=30.95 Aligned_cols=103 Identities=9% Similarity=0.064 Sum_probs=58.2
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCC-----cccEEEeccCCCCC--h---HHH
Q 020098 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS-----SVELYQLHWAGIWG--N---EGF 179 (331)
Q Consensus 110 E~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d-----~iDl~~lh~p~~~~--~---~~~ 179 (331)
|+-+-++|+...+..+.+-++|.|=+- .+-|-..++...+++..+ -+.++.++.|+... . +.+
T Consensus 77 ~~~L~~aI~~~~~~~~P~~I~V~ttC~-------~eiIGDDi~~v~~~~~~~~p~~~~~pvi~v~tpgF~g~~~~G~~~a 149 (455)
T PRK14476 77 DENVEEAILNICKKAKPKIIGLCTTGL-------TETRGDDVAGALKEIRARHPELADTPIVYVSTPDFKGALEDGWAAA 149 (455)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCcch-------HhhhhccHHHHHHHHHhhccccCCCeEEEecCCCCCCcHHHHHHHH
Confidence 888888887765433346677776652 222222333333333222 36788899888632 2 223
Q ss_pred HHHHHH-HH--------HcCceeEEEeecCcHHHHHHHHHHHHhcCCCe
Q 020098 180 IDGLGD-AV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPL 219 (331)
Q Consensus 180 ~~~L~~-l~--------~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~ 219 (331)
+.+|-+ +. +.++|.-||-+++.+..++++.+..+..|+.+
T Consensus 150 ~~al~~~~~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~~~Gl~v 198 (455)
T PRK14476 150 VEAIVEALVPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIEAFGLEP 198 (455)
T ss_pred HHHHHHHhcccccCCCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCce
Confidence 333322 22 34568888766665556677766677777665
No 141
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=47.83 E-value=2.3e+02 Score=26.15 Aligned_cols=51 Identities=8% Similarity=0.048 Sum_probs=31.9
Q ss_pred chhhHHHHHHHHHHHHHCC-CCeEECCcCcCCCCCCCCCchHHHHHHHHHhc
Q 020098 70 DDRKMKAAKAAFDTSLDNG-ITFFDTAEVYGSRASFGAINSETLLGRFIKER 120 (331)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~G-vn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~ 120 (331)
+.++.+...+.++..++.| ++-|=..-..|-+.+-...+-++++-.+.+..
T Consensus 16 g~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~ 67 (290)
T TIGR00683 16 GTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEA 67 (290)
T ss_pred CCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHh
Confidence 4688899999999999999 88775554444332212223344555555554
No 142
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=47.58 E-value=1.3e+02 Score=27.44 Aligned_cols=53 Identities=9% Similarity=-0.132 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHHHHhh------CCCcccEEEeccCCC--CChHHHHHHHHHHHHcCce
Q 020098 140 WRLGRQSVLAALKDSLFRL------GLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLV 192 (331)
Q Consensus 140 ~~~~~~~i~~~v~~sL~~L------g~d~iDl~~lh~p~~--~~~~~~~~~L~~l~~~G~i 192 (331)
..++.+.-.+-.+-+.+.+ ++++|-|=.+-.+.. .++.|++++-+.|.++|-+
T Consensus 79 Gc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~ 139 (267)
T CHL00162 79 GCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFT 139 (267)
T ss_pred CCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCE
Confidence 4566666555555555555 688888777766665 4578999999999999955
No 143
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=46.89 E-value=79 Score=27.35 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=25.8
Q ss_pred cccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecCcHHH
Q 020098 162 SVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKR 204 (331)
Q Consensus 162 ~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~ 204 (331)
.+|.++||..++ .+..+.+.+......++.||++++....
T Consensus 73 ~~d~Vqlhg~e~---~~~~~~l~~~~~~~~i~~i~~~~~~~~~ 112 (203)
T cd00405 73 GLDVVQLHGDES---PEYCAQLRARLGLPVIKAIRVKDEEDLE 112 (203)
T ss_pred CCCEEEECCCCC---HHHHHHHHhhcCCcEEEEEecCChhhHH
Confidence 378899998752 2334444443345678899999875433
No 144
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=46.80 E-value=2.3e+02 Score=25.91 Aligned_cols=132 Identities=8% Similarity=0.021 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECCcCcC-------CCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCC-CCCCC
Q 020098 72 RKMKAAKAAFDTSLDNGITFFDTAEVYG-------SRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAAL-PWRLG 143 (331)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg-------~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~-~~~~~ 143 (331)
.+.++..++.....+.||..||....-. .+.. -++.+.++.+..+ +.++....+.-.. .+..-
T Consensus 18 ~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~-----~~e~i~~~~~~~~----~~~l~~~~r~~~~~~~~~~ 88 (275)
T cd07937 18 MRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNED-----PWERLRELRKAMP----NTPLQMLLRGQNLVGYRHY 88 (275)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCC-----HHHHHHHHHHhCC----CCceehhcccccccCccCC
Confidence 3457777777788899999999864210 1111 1444544443333 3444444442110 01112
Q ss_pred HHHHHHHHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEe-----ecCcHHHHHHHHHHHHhcC
Q 020098 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGV-----SNYSEKRLRNAYEKLKKRG 216 (331)
Q Consensus 144 ~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGv-----s~~~~~~l~~~~~~~~~~~ 216 (331)
+..+.+..-+.....|++.|.++. |. .+.+.+.+.++..++.|+.-.+.+ +.++++.+.++.+.+...|
T Consensus 89 p~~~~~~di~~~~~~g~~~iri~~---~~-~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~G 162 (275)
T cd07937 89 PDDVVELFVEKAAKNGIDIFRIFD---AL-NDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMG 162 (275)
T ss_pred CcHHHHHHHHHHHHcCCCEEEEee---cC-ChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcC
Confidence 232222222222334555544422 21 135666777777788886433333 3455666666666555544
No 145
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=46.65 E-value=1.3e+02 Score=27.15 Aligned_cols=96 Identities=10% Similarity=0.160 Sum_probs=51.9
Q ss_pred EEeecCcHH--HHHHHHHHHHhcCCCeeeeeeccc---ccccC---ccccchhHHHHHcCCeEEEcccCccccccCCCCC
Q 020098 195 VGVSNYSEK--RLRNAYEKLKKRGIPLASNQVNYS---LIYRK---PEENGVKAACDELGITLIAYCPIAQGALTGKYTP 266 (331)
Q Consensus 195 iGvs~~~~~--~l~~~~~~~~~~~~~~~~~q~~~n---~~~~~---~~~~~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~ 266 (331)
||+|++... .+++.++.+...|+ +.+++..+ .+... .....+.+.++++||.+.++.+...+.-.+ .
T Consensus 3 lg~~t~~~~~~~l~~~l~~~~~~G~--~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~-~-- 77 (275)
T PRK09856 3 TGMFTCGHQRLPIEHAFRDASELGY--DGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNGYPYN-M-- 77 (275)
T ss_pred eeeeehhheeCCHHHHHHHHHHcCC--CEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccCcCcc-c--
Confidence 677766443 36666666666654 33333211 01111 011247888899999999887755432000 0
Q ss_pred CCCCCCCCCCccchhHHhhHHHHHHHHHHHHHhcCCCH
Q 020098 267 QNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (331)
Q Consensus 267 ~~~p~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~ 304 (331)
..-.+...+...+.+....++|++.|...
T Consensus 78 ---------~~~~~~~r~~~~~~~~~~i~~a~~lGa~~ 106 (275)
T PRK09856 78 ---------MLGDEHMRRESLDMIKLAMDMAKEMNAGY 106 (275)
T ss_pred ---------cCCCHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 00112334445566667778888887653
No 146
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=46.49 E-value=2.7e+02 Score=26.57 Aligned_cols=155 Identities=9% Similarity=-0.036 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 020098 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (331)
Q Consensus 73 ~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~ 152 (331)
+.++..+.+..+.+.|++.|=.- .++...- .-....=+++++.. -.++-|..=.. ...+.+...+ +-
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik-~~~~~~~----~~di~~i~~vR~~~----G~~~~l~vDan---~~~~~~~A~~-~~ 209 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLH-PWGPGVV----RRDLKACLAVREAV----GPDMRLMHDGA---HWYSRADALR-LG 209 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCCchhH----HHHHHHHHHHHHHh----CCCCeEEEECC---CCcCHHHHHH-HH
Confidence 44667778888899999988652 1211000 00122223333322 12443333221 2244443221 22
Q ss_pred HHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCcee-EEEeecCc-HHHHHHHHHHHHhcCCCeeeeeecccccc
Q 020098 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYS-EKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (331)
Q Consensus 153 ~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~-~iGvs~~~-~~~l~~~~~~~~~~~~~~~~~q~~~n~~~ 230 (331)
+.|+.+ ++.++..|- +..+ ++.+.+|+++-.|. ..|=+-++ .+.+.++++. -..+++|+..+-.-
T Consensus 210 ~~l~~~-----~l~~iEeP~--~~~d-~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~-----~a~d~v~~d~~~~G 276 (368)
T cd03329 210 RALEEL-----GFFWYEDPL--REAS-ISSYRWLAEKLDIPILGTEHSRGALESRADWVLA-----GATDFLRADVNLVG 276 (368)
T ss_pred HHhhhc-----CCCeEeCCC--Cchh-HHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHh-----CCCCEEecCccccC
Confidence 223333 455555553 2233 47777888876554 23444456 7778887664 35778887766542
Q ss_pred cCccccchhHHHHHcCCeEEEcc
Q 020098 231 RKPEENGVKAACDELGITLIAYC 253 (331)
Q Consensus 231 ~~~~~~~~l~~~~~~gi~v~a~s 253 (331)
.-.+-..+...|+++||.+..++
T Consensus 277 Git~~~~ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 277 GITGAMKTAHLAEAFGLDVELHG 299 (368)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEC
Confidence 21121258999999999998754
No 147
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=46.48 E-value=1.7e+02 Score=24.29 Aligned_cols=156 Identities=13% Similarity=0.070 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcCcC-CCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 020098 74 MKAAKAAFDTSLDNGITFFDTAEVYG-SRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (331)
Q Consensus 74 ~~~~~~~l~~A~~~Gvn~~Dta~~Yg-~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~ 152 (331)
+|...+.++.|++.|.+.|++-=..- +|.-.--|. --.+-++|+.... .-.++|=.|... . .+.+.+.+-
T Consensus 12 pent~~a~~~a~~~g~~~iE~Dv~~tkDg~~vv~Hd-i~tL~e~l~~~~~---~~~i~leiK~~~----~-~~~~~~~l~ 82 (189)
T cd08556 12 PENTLAAFRKALEAGADGVELDVQLTKDGVLVVIHD-IPTLEEVLELVKG---GVGLNIELKEPT----R-YPGLEAKVA 82 (189)
T ss_pred CchHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcC-CCCHHHHHHhccc---CcEEEEEECCCC----C-chhHHHHHH
Confidence 37788899999999999888533322 110000000 1123344444431 124666666521 1 334455555
Q ss_pred HHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccC
Q 020098 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (331)
Q Consensus 153 ~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~ 232 (331)
..+++.+. .+=+++.+.+ .+.+..+.+...+= .+|+...+..........+.. ..+..+.+.+..+.
T Consensus 83 ~~i~~~~~--~~~v~i~s~~----~~~l~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~-- 149 (189)
T cd08556 83 ELLREYGL--EERVVVSSFD----HEALRALKELDPEV---PTGLLVDKPPLDPLLAELARA--LGADAVNPHYKLLT-- 149 (189)
T ss_pred HHHHHcCC--cCCEEEEeCC----HHHHHHHHHhCCCC---cEEEEeecCcccchhhhHHHh--cCCeEEccChhhCC--
Confidence 55666552 2334443332 12333333222111 133332211111110001111 23445555554422
Q ss_pred ccccchhHHHHHcCCeEEEccc
Q 020098 233 PEENGVKAACDELGITLIAYCP 254 (331)
Q Consensus 233 ~~~~~~l~~~~~~gi~v~a~s~ 254 (331)
..+++.|+++|+.+.+|..
T Consensus 150 ---~~~i~~~~~~g~~v~~wtv 168 (189)
T cd08556 150 ---PELVRAAHAAGLKVYVWTV 168 (189)
T ss_pred ---HHHHHHHHHcCCEEEEEcC
Confidence 1489999999999999864
No 148
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=46.45 E-value=1.3e+02 Score=25.41 Aligned_cols=111 Identities=15% Similarity=0.049 Sum_probs=60.7
Q ss_pred HHHHHHHHHcC-ceeEEEeecCcHHHHH---HHHHHHHhc-CCCeeeeeecccccccCc-------cc-----cchhHHH
Q 020098 180 IDGLGDAVEQG-LVKAVGVSNYSEKRLR---NAYEKLKKR-GIPLASNQVNYSLIYRKP-------EE-----NGVKAAC 242 (331)
Q Consensus 180 ~~~L~~l~~~G-~i~~iGvs~~~~~~l~---~~~~~~~~~-~~~~~~~q~~~n~~~~~~-------~~-----~~~l~~~ 242 (331)
...|.+....+ .|...|+++.+..++. ++-+..... .....++++-.|=..... ++ ..+++.+
T Consensus 24 ~~~l~~~~~~~~~v~N~gi~G~ts~~~~~~~~~~~~l~~~~~pdlVii~~G~ND~~~~~~~~~~~~~~~~~nl~~ii~~~ 103 (198)
T cd01821 24 GQALPQYLDTGITVVNHAKGGRSSRSFRDEGRWDAILKLIKPGDYVLIQFGHNDQKPKDPEYTEPYTTYKEYLRRYIAEA 103 (198)
T ss_pred HHHHHHHhCCCCEEEeCCCCCccHHHHHhCCcHHHHHhhCCCCCEEEEECCCCCCCCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 33444443333 5678889888766543 222222221 234555666666444321 00 1588889
Q ss_pred HHcCCeEEEcccCccccccCCCCCCCCCCCCCCCccchhHHhhHHHHHHHHHHHHHhcCCCHHH
Q 020098 243 DELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQ 306 (331)
Q Consensus 243 ~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~q 306 (331)
+++++.++..+|....-+. . . . ...+...+..+.++++|+++|+....
T Consensus 104 ~~~~~~~il~tp~~~~~~~----~----~----~----~~~~~~~~~~~~~~~~a~~~~~~~vD 151 (198)
T cd01821 104 RAKGATPILVTPVTRRTFD----E----G----G----KVEDTLGDYPAAMRELAAEEGVPLID 151 (198)
T ss_pred HHCCCeEEEECCccccccC----C----C----C----cccccchhHHHHHHHHHHHhCCCEEe
Confidence 9999998888775421110 0 0 0 01122344556899999999986433
No 149
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=46.27 E-value=60 Score=27.61 Aligned_cols=63 Identities=24% Similarity=0.201 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhhCCCc----ccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecCcHHHHHHHHH
Q 020098 147 VLAALKDSLFRLGLSS----VELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYE 210 (331)
Q Consensus 147 i~~~v~~sL~~Lg~d~----iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~ 210 (331)
....++..++.+|.+. ++.+.-.+.......++.+.|+.|++.| ++-.-+||.+.+.+...++
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~ 127 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEAYLRLPPHPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVK 127 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHH
Confidence 4556677777777652 1111111112234567888999999988 4445577777777666644
No 150
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=46.03 E-value=2.7e+02 Score=26.37 Aligned_cols=167 Identities=10% Similarity=-0.010 Sum_probs=84.1
Q ss_pred CCchhhHHHHHHHHHHHHHCCCCeEE-----CCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCC
Q 020098 68 QWDDRKMKAAKAAFDTSLDNGITFFD-----TAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRL 142 (331)
Q Consensus 68 ~~~~~~~~~~~~~l~~A~~~Gvn~~D-----ta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~ 142 (331)
++.+.+.+++...|..+++.+...+- .-+.|... .... .+.+.+.+++.. .--.+-.|++. ...
T Consensus 47 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~vp~~~tv---~~~~-~e~~~~~~~~~~-----G~~~~KvKVg~--~~~ 115 (327)
T PRK02901 47 PFLEYDPAEAAAWLASAIEAAYGGPPPPVRDRVPVNATV---PAVD-AAQVPEVLARFP-----GCRTAKVKVAE--PGQ 115 (327)
T ss_pred CCCCCCHHHHHHHHHHHHHhhhccCCcccCCeEEeeEEe---CCCC-HHHHHHHHHHhC-----CCCEEEEEECC--CCC
Confidence 34556677888999999988664321 11112210 0001 233444444321 11223345543 222
Q ss_pred CHHHHHHHHHHHHHhhCCC-------------------------cccEEEeccCCCCChHHHHHHHHHHHHcCcee-EEE
Q 020098 143 GRQSVLAALKDSLFRLGLS-------------------------SVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVG 196 (331)
Q Consensus 143 ~~~~i~~~v~~sL~~Lg~d-------------------------~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~-~iG 196 (331)
+.+.-.+.++..++.+|-+ ..++.++..|-. .++.+.+++++-.|. ..|
T Consensus 116 ~~~~Di~rv~avRe~lGpd~~LrvDAN~~ws~~~Ai~~~~~L~e~~~l~~iEqP~~-----~~~~la~Lr~~~~vPIA~D 190 (327)
T PRK02901 116 TLADDVARVNAVRDALGPDGRVRVDANGGWSVDEAVAAARALDADGPLEYVEQPCA-----TVEELAELRRRVGVPIAAD 190 (327)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHhhhccCceEEecCCC-----CHHHHHHHHHhCCCCEEeC
Confidence 4444455555666666532 123333333321 145555555543332 334
Q ss_pred eecCcHHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHHHHHcCCeEEEcccCccc
Q 020098 197 VSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (331)
Q Consensus 197 vs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G 258 (331)
=|-++.+.+.++++. ...+++|+....+-.-. ++++.|+++||.++..+.+..+
T Consensus 191 Es~~~~~d~~~l~~~-----~a~dvi~ik~~~~GGit---~~lkiA~~~gi~v~v~s~~es~ 244 (327)
T PRK02901 191 ESIRRAEDPLRVARA-----GAADVAVLKVAPLGGVR---AALDIAEQIGLPVVVSSALDTS 244 (327)
T ss_pred CCCCCHHHHHHHHHc-----CCCCEEEeCcchhCCHH---HHHHHHHHcCCcEEEeCCcccH
Confidence 444555555555432 34566666655433221 4788999999999987766555
No 151
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=46.01 E-value=76 Score=31.86 Aligned_cols=91 Identities=10% Similarity=0.030 Sum_probs=56.2
Q ss_pred CCcEEEEecCCCCCCCCCHHHHH----------HHHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEE
Q 020098 126 EVEVTVATKFAALPWRLGRQSVL----------AALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAV 195 (331)
Q Consensus 126 R~~~~i~tK~~~~~~~~~~~~i~----------~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~i 195 (331)
+.++||++-+|.+.... +.... -.-++.-+|+.+.|+|.+. .++++.++..++.+++|+...|
T Consensus 156 ~Gk~~lTaGLGGMgGAQ-plA~~m~g~v~l~vEvd~~ri~kR~~~g~ld~~~------~~ldea~~~~~ea~~~~~~~SI 228 (546)
T PF01175_consen 156 AGKLFLTAGLGGMGGAQ-PLAATMAGGVGLIVEVDPSRIEKRLEQGYLDEVT------DDLDEALARAKEARAKKEPLSI 228 (546)
T ss_dssp TT-EEEEE--STTCCHH-HHHHHHTT-EEEEEES-HHHHHHHHHTTSSSEEE------SSHHHHHHHHHHHHHTT--EEE
T ss_pred cceEEEEecccccccch-HHHHHhcCceEEEEEECHHHHHHHHhCCCeeEEc------CCHHHHHHHHHHhhccCCeeEE
Confidence 68999999998643211 11111 1234445677788999654 5789999999999999999999
Q ss_pred EeecCcHHHHHHHHHHHHhcCCC--eeeeeeccc
Q 020098 196 GVSNYSEKRLRNAYEKLKKRGIP--LASNQVNYS 227 (331)
Q Consensus 196 Gvs~~~~~~l~~~~~~~~~~~~~--~~~~q~~~n 227 (331)
|+-+.-.+.++++++. ++. +..-|+..|
T Consensus 229 g~~GN~ad~~~~l~~~----~i~pDl~tDQTS~H 258 (546)
T PF01175_consen 229 GLLGNAADLWEELVER----GIIPDLVTDQTSAH 258 (546)
T ss_dssp EEES-HHHHHHHHHHT----T---SEE---SSTT
T ss_pred EEeccHHHHHHHHHHc----CCCCCcccCCCccc
Confidence 9999988888888543 444 444577764
No 152
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=45.99 E-value=66 Score=28.40 Aligned_cols=88 Identities=11% Similarity=0.018 Sum_probs=55.0
Q ss_pred ccEEEeccCCCCChHHHHHHHHHHHHcCcee-EEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHH
Q 020098 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (331)
Q Consensus 163 iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~-~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~ 241 (331)
.++.++..|-+.. -++.+.+|.+...+. ..+=|.++.+.+.++++. ...+++|+..+-+-.-.+-..+.++
T Consensus 120 ~~i~~iEeP~~~~---d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~-----~~~d~~~~k~~~~GGi~~~~~i~~~ 191 (229)
T cd00308 120 YGLAWIEEPCAPD---DLEGYAALRRRTGIPIAADESVTTVDDALEALEL-----GAVDILQIKPTRVGGLTESRRAADL 191 (229)
T ss_pred cCCCeEECCCCcc---CHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHc-----CCCCEEecCccccCCHHHHHHHHHH
Confidence 4666777664322 256677777777665 334445566766666443 3467777766554221111248899
Q ss_pred HHHcCCeEEEcccCccc
Q 020098 242 CDELGITLIAYCPIAQG 258 (331)
Q Consensus 242 ~~~~gi~v~a~s~l~~G 258 (331)
|+++|+.+..++.+..|
T Consensus 192 a~~~gi~~~~~~~~~s~ 208 (229)
T cd00308 192 AEAFGIRVMVHGTLESS 208 (229)
T ss_pred HHHcCCEEeecCCCCCH
Confidence 99999999998876654
No 153
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=45.95 E-value=2.7e+02 Score=26.45 Aligned_cols=83 Identities=10% Similarity=0.023 Sum_probs=38.0
Q ss_pred CcEEEEecCCCCCC---CCCHHHHHHHHHHHHHhhCCCcccE-EEecc-CCC-----CChHHHHHHHHHHHHcCceeEEE
Q 020098 127 VEVTVATKFAALPW---RLGRQSVLAALKDSLFRLGLSSVEL-YQLHW-AGI-----WGNEGFIDGLGDAVEQGLVKAVG 196 (331)
Q Consensus 127 ~~~~i~tK~~~~~~---~~~~~~i~~~v~~sL~~Lg~d~iDl-~~lh~-p~~-----~~~~~~~~~L~~l~~~G~i~~iG 196 (331)
.++.|..|++..+. ..+.+... .+-+.|+.+|+|+|++ ...|. +.. .+.........++++.=.+--++
T Consensus 203 ~d~~v~iRi~~~D~~~~g~~~~e~~-~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~ 281 (353)
T cd02930 203 EDFIIIYRLSMLDLVEGGSTWEEVV-ALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIA 281 (353)
T ss_pred CCceEEEEecccccCCCCCCHHHHH-HHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEE
Confidence 46667777754221 13333332 3334456667776665 11221 111 11111233345555554555455
Q ss_pred eecC-cHHHHHHHHH
Q 020098 197 VSNY-SEKRLRNAYE 210 (331)
Q Consensus 197 vs~~-~~~~l~~~~~ 210 (331)
..++ +++.++++++
T Consensus 282 ~G~i~~~~~a~~~i~ 296 (353)
T cd02930 282 SNRINTPEVAERLLA 296 (353)
T ss_pred cCCCCCHHHHHHHHH
Confidence 5443 5666666644
No 154
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=45.80 E-value=1.9e+02 Score=26.56 Aligned_cols=72 Identities=14% Similarity=0.210 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHcCceeEEEeecC-cH---HHHHHHHHHHHhcCCC-eeeeeecccccccCccccchhHHHHHcCCeEEE
Q 020098 177 EGFIDGLGDAVEQGLVKAVGVSNY-SE---KRLRNAYEKLKKRGIP-LASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (331)
Q Consensus 177 ~~~~~~L~~l~~~G~i~~iGvs~~-~~---~~l~~~~~~~~~~~~~-~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a 251 (331)
+.+++.+++.++++.---|++=.| ++ ..++++++.++..|+. +-+.=+ +.+.. .++.+.|+++||..+-
T Consensus 79 ~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDL---P~ee~---~~~~~~~~~~gi~~I~ 152 (265)
T COG0159 79 EDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDL---PPEES---DELLKAAEKHGIDPIF 152 (265)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCC---ChHHH---HHHHHHHHHcCCcEEE
Confidence 455666666665543323333332 22 3345555555555432 111000 11111 2488888888888775
Q ss_pred ccc
Q 020098 252 YCP 254 (331)
Q Consensus 252 ~s~ 254 (331)
..+
T Consensus 153 lva 155 (265)
T COG0159 153 LVA 155 (265)
T ss_pred EeC
Confidence 443
No 155
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=45.74 E-value=41 Score=32.13 Aligned_cols=75 Identities=13% Similarity=0.026 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCcee-EEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHHHHHcCCeEEEcccCcc
Q 020098 179 FIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (331)
Q Consensus 179 ~~~~L~~l~~~G~i~-~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~ 257 (331)
-++.+.+|.++..|. .+|=+-++.+.+.++++. ..++++|+...-.-.-.+-..+...|+++|+.++..+....
T Consensus 227 ~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~-----~~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~s 301 (365)
T cd03318 227 NLDGLARLRSRNRVPIMADESVSGPADAFELARR-----GAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLES 301 (365)
T ss_pred cHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHh-----CCCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcchh
Confidence 367777777776554 556666677788777654 34666666554432111112488899999999987654444
Q ss_pred c
Q 020098 258 G 258 (331)
Q Consensus 258 G 258 (331)
+
T Consensus 302 ~ 302 (365)
T cd03318 302 S 302 (365)
T ss_pred H
Confidence 4
No 156
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=45.41 E-value=2.4e+02 Score=25.76 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCC
Q 020098 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFG 105 (331)
Q Consensus 73 ~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~ 105 (331)
+.+...++++...+.|++.++-.=-|.+..+||
T Consensus 27 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDG 59 (263)
T CHL00200 27 DIVITKKALKILDKKGADIIELGIPYSDPLADG 59 (263)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCccC
Confidence 458899999999999999999888887776655
No 157
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=45.29 E-value=3e+02 Score=26.83 Aligned_cols=104 Identities=13% Similarity=0.108 Sum_probs=54.5
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhC--CCcccEEEeccCCCCC--hHHHHHHHHH
Q 020098 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGIWG--NEGFIDGLGD 185 (331)
Q Consensus 110 E~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg--~d~iDl~~lh~p~~~~--~~~~~~~L~~ 185 (331)
++-+-++|....++.+.+-++|.|=+- .+-+-..++...+++. . -+.++.+|.|.... ....-.+++.
T Consensus 70 ~~kL~~~I~~~~~~~~p~~I~v~~tC~-------~~iIGdDi~~v~~~~~~~~-~~~vi~v~t~gf~g~~~~g~~~al~~ 141 (430)
T cd01981 70 QEKVVENITRKDKEEKPDLIVLTPTCT-------SSILQEDLQNFVRAAGLSS-KSPVLPLDVNHYRVNELQAADETFEQ 141 (430)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcc-------HHHHhhCHHHHHHHhhhcc-CCCeEEecCCCccchHHHHHHHHHHH
Confidence 445555555443322245666766653 3333333333333332 2 25788889887622 1222222222
Q ss_pred HH-----------------HcCceeEEEeecCc---HHHHHHHHHHHHhcCCCeee
Q 020098 186 AV-----------------EQGLVKAVGVSNYS---EKRLRNAYEKLKKRGIPLAS 221 (331)
Q Consensus 186 l~-----------------~~G~i~~iGvs~~~---~~~l~~~~~~~~~~~~~~~~ 221 (331)
+. ++.+|.-||.++.+ +..+.++.+..+..|+.+.+
T Consensus 142 l~~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v~~ 197 (430)
T cd01981 142 LVRFYAEKARPQGTPREKTEKPSVNLIGPSSLGFHNRHDCRELKRLLHTLGIEVNV 197 (430)
T ss_pred HHHHHhccccccccccccCCCCcEEEEcCCCCCCCCcchHHHHHHHHHHcCCeEEE
Confidence 22 23568889987543 56666666667777766544
No 158
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=45.25 E-value=90 Score=24.97 Aligned_cols=61 Identities=8% Similarity=0.035 Sum_probs=46.3
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCC---cccEEEeccCCC--CChHHHHHHHHHHHHc
Q 020098 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS---SVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (331)
Q Consensus 126 R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d---~iDl~~lh~p~~--~~~~~~~~~L~~l~~~ 189 (331)
|=.+.|+-|+|. ...+..+++.+.++.+.+..+ -.|++++-.+.. .+..++.+.|+.+.+.
T Consensus 49 R~G~~VsKKvG~---AV~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03459 49 RFGLVVSKAVGN---AVIRHRVSRRLRHICADIVDQVPETHHVVIRALPGAATASSAELERDVRAGLGK 114 (122)
T ss_pred EEEEEEeeeccc---hhHHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccccCCHHHHHHHHHHHHHH
Confidence 778999999974 566888999888888887643 369999988765 4566777777776654
No 159
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=45.05 E-value=42 Score=32.14 Aligned_cols=75 Identities=11% Similarity=-0.050 Sum_probs=48.8
Q ss_pred HHHHHHHHHcCcee-EEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHHHHHcCCeEEEcccCccc
Q 020098 180 IDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (331)
Q Consensus 180 ~~~L~~l~~~G~i~-~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G 258 (331)
++.+.+|++...+. ..|=+.++.+.+.++++. ...+++|+...-.-.-.+-..+...|+.+|+.+...+.+.++
T Consensus 227 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~-----~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s~ 301 (368)
T TIGR02534 227 REALARLTRRFNVPIMADESVTGPADALAIAKA-----SAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEGP 301 (368)
T ss_pred HHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHh-----CCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhhH
Confidence 66777777776654 667777788888877654 346777766554321111124888999999999876555444
Q ss_pred c
Q 020098 259 A 259 (331)
Q Consensus 259 ~ 259 (331)
+
T Consensus 302 i 302 (368)
T TIGR02534 302 I 302 (368)
T ss_pred H
Confidence 3
No 160
>PRK09875 putative hydrolase; Provisional
Probab=45.02 E-value=2.6e+02 Score=25.99 Aligned_cols=39 Identities=5% Similarity=0.090 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHCCCC-eEECCcCcCCCCCCCCCchHHHHHHHHHh
Q 020098 74 MKAAKAAFDTSLDNGIT-FFDTAEVYGSRASFGAINSETLLGRFIKE 119 (331)
Q Consensus 74 ~~~~~~~l~~A~~~Gvn-~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~ 119 (331)
.+.+.+-|..+.+.|++ .+|.+ .+|-|+. -+.+.+.-+.
T Consensus 33 ~~~~~~el~~~~~~Gg~tiVd~T-~~g~GRd------~~~l~~is~~ 72 (292)
T PRK09875 33 YAFICQEMNDLMTRGVRNVIEMT-NRYMGRN------AQFMLDVMRE 72 (292)
T ss_pred HHHHHHHHHHHHHhCCCeEEecC-CCccCcC------HHHHHHHHHH
Confidence 46666667777788777 66755 4455665 5555554443
No 161
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=44.99 E-value=1.9e+02 Score=26.41 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=11.8
Q ss_pred HHHHHHhhCCCcccEE
Q 020098 151 LKDSLFRLGLSSVELY 166 (331)
Q Consensus 151 v~~sL~~Lg~d~iDl~ 166 (331)
+-..|.++|+++|++-
T Consensus 26 ia~~L~~~Gv~~iE~G 41 (275)
T cd07937 26 IAEALDEAGFFSLEVW 41 (275)
T ss_pred HHHHHHHcCCCEEEcc
Confidence 4667777887777776
No 162
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=44.91 E-value=3e+02 Score=26.68 Aligned_cols=105 Identities=22% Similarity=0.143 Sum_probs=57.3
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCC-----hHHHHHHHH
Q 020098 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (331)
Q Consensus 110 E~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~-----~~~~~~~L~ 184 (331)
|+-+-++|+...+..+.+-++|.|-+-..--.-+-+.+ +++.-++. .+.++.+|.|.... .+.++++|-
T Consensus 71 ~~~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdDi~~v---~~~~~~~~---~~~vi~v~t~gf~g~~~~G~~~a~~~l~ 144 (410)
T cd01968 71 EKKLYKAILEIIERYHPKAVFVYSTCVVALIGDDIDAV---CKTASEKF---GIPVIPVHSPGFVGNKNLGNKLACEALL 144 (410)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCCchhhhccCHHHH---HHHHHHhh---CCCEEEEECCCcccChhHHHHHHHHHHH
Confidence 88888888776654445677787777431112223333 33222233 35788888877522 233444444
Q ss_pred HHHH---------cCceeEEEeecCcHHHHHHHHHHHHhcCCCeee
Q 020098 185 DAVE---------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (331)
Q Consensus 185 ~l~~---------~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~ 221 (331)
+... .+.|.-||-.++. ..+.++.+..+..|+++.+
T Consensus 145 ~~l~~~~~~~~~~~~~VNiig~~~~~-~d~~el~~lL~~~Gl~v~~ 189 (410)
T cd01968 145 DHVIGTEEPEPLTPYDINLIGEFNVA-GELWGVKPLLEKLGIRVLA 189 (410)
T ss_pred HHhcCCCCcccCCCCcEEEECCCCCc-ccHHHHHHHHHHcCCeEEE
Confidence 3331 4678888854443 3344555556666666543
No 163
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=44.75 E-value=1.3e+02 Score=26.43 Aligned_cols=74 Identities=30% Similarity=0.368 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecCcHHHHHHHHHHHHhcCCCeeee
Q 020098 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (331)
Q Consensus 144 ~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~ 222 (331)
...+.+.+++.++.+|.+ +.++ .+...+.+...+.++.+.++| +..|=++..+...+...++.+...|+|...+
T Consensus 13 ~~~~~~g~~~~a~~~g~~-~~~~---~~~~~d~~~q~~~i~~~i~~~-~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~ 86 (257)
T PF13407_consen 13 WQQVIKGAKAAAKELGYE-VEIV---FDAQNDPEEQIEQIEQAISQG-VDGIIVSPVDPDSLAPFLEKAKAAGIPVVTV 86 (257)
T ss_dssp HHHHHHHHHHHHHHHTCE-EEEE---EESTTTHHHHHHHHHHHHHTT-ESEEEEESSSTTTTHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHHcCCE-EEEe---CCCCCCHHHHHHHHHHHHHhc-CCEEEecCCCHHHHHHHHHHHhhcCceEEEE
Confidence 556888999999999964 3333 333345688889999999888 8888888777666666666667777765553
No 164
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=44.69 E-value=73 Score=28.79 Aligned_cols=78 Identities=21% Similarity=0.319 Sum_probs=49.7
Q ss_pred CCCcccccceecccc---cCCCCCCCCCCCchhhHHHHHHHHHHH----HHCCCCeEECCcC---cCCCCCCCCCchHHH
Q 020098 43 GSDLKVTKLGVGAWS---WGDTSYWNNFQWDDRKMKAAKAAFDTS----LDNGITFFDTAEV---YGSRASFGAINSETL 112 (331)
Q Consensus 43 ~tg~~vs~lglG~~~---~g~~~~~~~~~~~~~~~~~~~~~l~~A----~~~Gvn~~Dta~~---Yg~g~~~~~~~sE~~ 112 (331)
.+|+.+|.+||.+-+ ||.. .+..++++.+++..| .+.|||.|-.|.. |... + ++.
T Consensus 65 etgv~ipSmClSaHRRfPfGS~--------D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~-d------~eT 129 (287)
T COG3623 65 ETGVRIPSMCLSAHRRFPFGSK--------DEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEA-D------EET 129 (287)
T ss_pred HhCCCccchhhhhhccCCCCCC--------CHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccC-C------HHH
Confidence 479999999998754 3332 344556666665555 5889999998753 4443 2 666
Q ss_pred HHHHHHhccC---CCCCCcEEEEecC
Q 020098 113 LGRFIKERKQ---RDPEVEVTVATKF 135 (331)
Q Consensus 113 iG~~l~~~~~---~~~R~~~~i~tK~ 135 (331)
..+++..... ...+..|.++.-+
T Consensus 130 ~~rFi~g~~~a~~lA~~aqV~lAvEi 155 (287)
T COG3623 130 RQRFIEGLKWAVELAARAQVMLAVEI 155 (287)
T ss_pred HHHHHHHHHHHHHHHHhhccEEEeee
Confidence 6666654321 1135677777666
No 165
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=44.69 E-value=91 Score=28.90 Aligned_cols=105 Identities=10% Similarity=0.035 Sum_probs=63.9
Q ss_pred CceeEEEeecCcHHHHHHHHHHHHhcCCCeeee-eecccccccCccccchhHHHHHcCCeEEEcccCccccccCCCCCCC
Q 020098 190 GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN-QVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQN 268 (331)
Q Consensus 190 G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~-q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~~~ 268 (331)
.++..+-=.+.+.+.+.++++.+......+.+. .+.+--.+|+. .+.+++++-++-++.-+.-.++
T Consensus 157 ~kv~~vsQTT~~~~~~~~iv~~l~~~~~~~~v~~TIC~aT~~RQ~---a~~~La~~vD~miVVGg~~SsN---------- 223 (281)
T PRK12360 157 DKACVVAQTTIIPELWEDILNVIKLKSKELVFFNTICSATKKRQE---SAKELSKEVDVMIVIGGKHSSN---------- 223 (281)
T ss_pred cCEEEEECCCCcHHHHHHHHHHHHHhCcccccCCCcchhhhhHHH---HHHHHHHhCCEEEEecCCCCcc----------
Confidence 445455555677888888877765432222221 22222222222 4888888888888773333321
Q ss_pred CCCCCCCCccchhHHhhHHHHHHHHHHHHHhcCC------CHHHHHHHhhhh------cccccchHHHHHhh
Q 020098 269 PPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSK------TSTQNSPCMSNS------LAKQILFQQLEKCL 328 (331)
Q Consensus 269 ~p~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~------s~~qval~~~l~------~~g~~~~~~l~enl 328 (331)
- .+|.++|++++. ++.++-..|+.. -.|+|+|+.+-+.+
T Consensus 224 -----------T----------~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~~VGitaGASTP~~li~eV 274 (281)
T PRK12360 224 -----------T----------QKLVKICEKNCPNTFHIETADELDLEMLKDYKIIGITAGASTPDWIIEEV 274 (281)
T ss_pred -----------H----------HHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEccCCCCHHHHHHH
Confidence 1 179999999874 678888888652 38999998665543
No 166
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=44.51 E-value=2.7e+02 Score=25.95 Aligned_cols=173 Identities=14% Similarity=0.061 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcCcCCCCCC---CC--CchHHHHHHHHHhccC---CCCCCcEEEEecCCCCC------
Q 020098 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASF---GA--INSETLLGRFIKERKQ---RDPEVEVTVATKFAALP------ 139 (331)
Q Consensus 74 ~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~---~~--~~sE~~iG~~l~~~~~---~~~R~~~~i~tK~~~~~------ 139 (331)
++..+++-+..+++|-+.|.|.....+.... |. ...+++...+++-..+ ...+.+++|+.=+|+..
T Consensus 45 Pe~V~~vH~~yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~VaGsiGP~g~~l~~~ 124 (304)
T PRK09485 45 PELIYQVHLDYFRAGADCAITASYQATFQGFAARGLSEAEAEELIRRSVELAKEARDEFWAEKPLVAGSVGPYGAYLADG 124 (304)
T ss_pred hHHHHHHHHHHHHhCCCEEEeeccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEecCCcccccCCC
Confidence 4666788888899999999986654431100 00 0123444444431110 00122578888887631
Q ss_pred ------CCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHc--CceeEEEeecC------cHHHH
Q 020098 140 ------WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNY------SEKRL 205 (331)
Q Consensus 140 ------~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~--G~i~~iGvs~~------~~~~l 205 (331)
+..+.+.+........+.|--..+|++++.-.. ...|+..+++.+++. ++--.+.++-. +...+
T Consensus 125 ~~y~g~~~~~~~~~~~~~~~q~~~l~~~gvD~i~~ET~~--~~~E~~~~~~~~~~~~~~~pv~is~~~~~~g~l~~G~~~ 202 (304)
T PRK09485 125 SEYRGDYGLSEEELQDFHRPRIEALAEAGADLLACETIP--NLDEAEALVELLKEEFPGVPAWLSFTLRDGTHISDGTPL 202 (304)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEeccC--CHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcCCCCCCH
Confidence 124678888888888888855569999998642 456666666666655 55445555432 12335
Q ss_pred HHHHHHHHhcCCCeeeeeecccccccCccccchhHHHHHc-CCeEEEc
Q 020098 206 RNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDEL-GITLIAY 252 (331)
Q Consensus 206 ~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~-gi~v~a~ 252 (331)
+++++.+... ..++.+-+++. .+..-. .+++...+. +..+.+|
T Consensus 203 ~~~~~~l~~~-~~~~~iGiNC~--~p~~~~-~~l~~~~~~~~~pl~~~ 246 (304)
T PRK09485 203 AEAAALLAAS-PQVVAVGVNCT--APELVT-AAIAALRAVTDKPLVVY 246 (304)
T ss_pred HHHHHHHhcC-CCceEEEecCC--CHHHHH-HHHHHHHhccCCcEEEE
Confidence 5555554321 24677777775 222111 244444432 4555554
No 167
>PRK07329 hypothetical protein; Provisional
Probab=44.38 E-value=2.4e+02 Score=25.30 Aligned_cols=107 Identities=13% Similarity=0.139 Sum_probs=60.2
Q ss_pred HHHHHHHHhhCCCcccEEEeccCCC----------CChHHHH----HHHHHHHHcC-ceeEEEeec----------Cc--
Q 020098 149 AALKDSLFRLGLSSVELYQLHWAGI----------WGNEGFI----DGLGDAVEQG-LVKAVGVSN----------YS-- 201 (331)
Q Consensus 149 ~~v~~sL~~Lg~d~iDl~~lh~p~~----------~~~~~~~----~~L~~l~~~G-~i~~iGvs~----------~~-- 201 (331)
..++..|.+...||+ +.-+|+.+. ...++++ +.+.++.+.+ .+..||=-. .+
T Consensus 83 ~~~~~~l~~~~~Dyv-IgSvH~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~fdvlgHpDl~~r~~~~~~~~~~ 161 (246)
T PRK07329 83 DDILDFLANKDFDLK-LLSVHHNGVYDYLDDEVADMDKKELLQEYFEKMEEAIGRVHDADVLAHFDYGLRLFDLTVEELK 161 (246)
T ss_pred HHHHHHhccCCCCeE-EEEEEEcCCCCCccHHHhcCCHHHHHHHHHHHHHHHHHccCCCCEeeeccHHHHhCCCCCcChH
Confidence 455666766778887 888898532 1223344 7788888776 654444111 11
Q ss_pred --HHHHHHHHHHHHhcCCCeeeeeeccc-ccccCccccchhHHHHHcCCeEEEcccCcc
Q 020098 202 --EKRLRNAYEKLKKRGIPLASNQVNYS-LIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (331)
Q Consensus 202 --~~~l~~~~~~~~~~~~~~~~~q~~~n-~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~ 257 (331)
.+.++++++.+...+..+.+|-..+. -...... ..+++.|++.|+..++.+.=+.
T Consensus 162 ~~~~~~~~i~~~~~~~~~~lEiNt~~~~~~~~~~~~-~~~l~~~~~~g~~~i~~gSDAH 219 (246)
T PRK07329 162 AFEPQLTRIFAKMIDNDLAFELNTKSMYLYGNEGLY-RYAIELYKQLGGKLFSIGSDAH 219 (246)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEECcccccCCCCcch-HHHHHHHHHcCCeEEEecCCCC
Confidence 24455666666766666666543321 0111111 1378888898886555555554
No 168
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=44.22 E-value=67 Score=29.79 Aligned_cols=108 Identities=17% Similarity=0.091 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCC-hHHHHHHHHHHHHcCceeEEEeecCcHHHHHHHHHHHHhcCCCee
Q 020098 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (331)
Q Consensus 142 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~-~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~ 220 (331)
++.+. +..+-+.|.++|+++|.+-.+.+|...+ ..+.++.+..+.+...++...+. -....++.+++. +.+..
T Consensus 23 ~s~e~-k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~----g~~~v 96 (287)
T PRK05692 23 IPTAD-KIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAA----GADEV 96 (287)
T ss_pred cCHHH-HHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHc----CCCEE
Confidence 44443 4456667999999999998666665322 23346666666554445555554 356667666442 33322
Q ss_pred eeeecccccc------cCcc-----ccchhHHHHHcCCeEEEcccC
Q 020098 221 SNQVNYSLIY------RKPE-----ENGVKAACDELGITLIAYCPI 255 (331)
Q Consensus 221 ~~q~~~n~~~------~~~~-----~~~~l~~~~~~gi~v~a~s~l 255 (331)
.+-+..|..+ ...+ -...+++++++|+.+.++-..
T Consensus 97 ~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~ 142 (287)
T PRK05692 97 AVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSC 142 (287)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEE
Confidence 2222222111 1100 114899999999988754333
No 169
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=44.06 E-value=2.4e+02 Score=25.44 Aligned_cols=37 Identities=8% Similarity=0.036 Sum_probs=19.1
Q ss_pred HHHHhhCCCcccEEEeccCCC---CChHHHHHHHHHHHHc
Q 020098 153 DSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQ 189 (331)
Q Consensus 153 ~sL~~Lg~d~iDl~~lh~p~~---~~~~~~~~~L~~l~~~ 189 (331)
+.++.+|.|++.+.+=+.... ....+..+.+.++.++
T Consensus 17 ~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~ 56 (279)
T cd00019 17 KRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEE 56 (279)
T ss_pred HHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHH
Confidence 345678888887764332211 1123445555555444
No 170
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=43.32 E-value=1.1e+02 Score=24.24 Aligned_cols=62 Identities=11% Similarity=0.077 Sum_probs=43.3
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhC--CCcccEEEeccCCC--CChHHHHHHHHHHHHc
Q 020098 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (331)
Q Consensus 126 R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg--~d~iDl~~lh~p~~--~~~~~~~~~L~~l~~~ 189 (331)
|=.+.|+-|++. ....+..+++.+.++++... +.-.|++++..+.. .+..++.+.|..|.+.
T Consensus 45 R~G~~VsKK~~~--~AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~k 110 (120)
T PRK04390 45 RLGLVVGKKTAK--RAVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMAK 110 (120)
T ss_pred eEEEEEecccCc--chhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 667888888643 35678889998888887653 23469999998865 4556666666666543
No 171
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=43.12 E-value=1e+02 Score=29.40 Aligned_cols=37 Identities=19% Similarity=0.422 Sum_probs=23.8
Q ss_pred eeeeecccccccCccc---cchhHHHHHcCCeEEEcccCc
Q 020098 220 ASNQVNYSLIYRKPEE---NGVKAACDELGITLIAYCPIA 256 (331)
Q Consensus 220 ~~~q~~~n~~~~~~~~---~~~l~~~~~~gi~v~a~s~l~ 256 (331)
++....||+.+....+ .++.+.|+++||.+-.|-...
T Consensus 122 ~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~ 161 (346)
T PF01120_consen 122 PSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPW 161 (346)
T ss_dssp --TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESS
T ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecch
Confidence 4445567776644332 269999999999999877766
No 172
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=43.05 E-value=1.2e+02 Score=26.69 Aligned_cols=23 Identities=0% Similarity=-0.106 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHCCCCeEEC
Q 020098 72 RKMKAAKAAFDTSLDNGITFFDT 94 (331)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gvn~~Dt 94 (331)
.+++.+.++++.+++.|+...|+
T Consensus 12 ~D~~~~~~~l~~al~~~~~~~~i 34 (213)
T cd02069 12 GIRDGIEEDTEEARQQYARPLEI 34 (213)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHH
Confidence 45689999999999999775554
No 173
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=42.72 E-value=1.9e+02 Score=23.65 Aligned_cols=112 Identities=13% Similarity=0.186 Sum_probs=64.4
Q ss_pred HHHHHHHHHHH-HCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 020098 75 KAAKAAFDTSL-DNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (331)
Q Consensus 75 ~~~~~~l~~A~-~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~ 153 (331)
+-...++..++ ++|+..+|+...-.. |+++..+.+..+ +=+-+++-.+ .+.. ..+.+.+
T Consensus 15 diGk~iv~~~l~~~GfeVi~LG~~v~~---------e~~v~aa~~~~a-----diVglS~l~~-----~~~~-~~~~~~~ 74 (134)
T TIGR01501 15 AVGNKILDHAFTNAGFNVVNLGVLSPQ---------EEFIKAAIETKA-----DAILVSSLYG-----HGEI-DCKGLRQ 74 (134)
T ss_pred hHhHHHHHHHHHHCCCEEEECCCCCCH---------HHHHHHHHHcCC-----CEEEEecccc-----cCHH-HHHHHHH
Confidence 44556777777 669999998776665 999988887754 4555666553 2233 3444666
Q ss_pred HHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecCcHHHHHHH
Q 020098 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNA 208 (331)
Q Consensus 154 sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~ 208 (331)
.|++-|.+.+ .+++=.....+.++.-+.-++|++.|--+-+|-.. +++.+...
T Consensus 75 ~l~~~gl~~~-~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt-~~~~iv~~ 127 (134)
T TIGR01501 75 KCDEAGLEGI-LLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGT-PPEVVIAD 127 (134)
T ss_pred HHHHCCCCCC-EEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCC-CHHHHHHH
Confidence 6777777543 24444422233344333445677788333333332 44444443
No 174
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=42.72 E-value=89 Score=30.40 Aligned_cols=85 Identities=9% Similarity=-0.093 Sum_probs=56.5
Q ss_pred ccEEEeccCCCCChHHHHHHHHHHHHcCcee-EEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHH
Q 020098 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (331)
Q Consensus 163 iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~-~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~ 241 (331)
.++.++..|-+. +-++.+.+|++.-.|. ..|=|-++.+.+.++++. ..++++|+...-.-.-.+-..+.+.
T Consensus 232 ~~l~~iEeP~~~---~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~-----~a~dii~~d~~~~GGit~~~kia~l 303 (404)
T PRK15072 232 YRLFWLEDPTPA---ENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEE-----QLIDYIRTTVTHAGGITHLRRIADF 303 (404)
T ss_pred cCCcEEECCCCc---cCHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHc-----CCCCEEecCccccCcHHHHHHHHHH
Confidence 466777766432 2267788888876664 667777888888888654 3477777765543211111248889
Q ss_pred HHHcCCeEEEcccC
Q 020098 242 CDELGITLIAYCPI 255 (331)
Q Consensus 242 ~~~~gi~v~a~s~l 255 (331)
|+.+|+.+..++..
T Consensus 304 A~~~gi~~~~h~~~ 317 (404)
T PRK15072 304 AALYQVRTGSHGPT 317 (404)
T ss_pred HHHcCCceeeccCc
Confidence 99999999987553
No 175
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=42.52 E-value=2.8e+02 Score=25.68 Aligned_cols=99 Identities=16% Similarity=0.160 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHHhhCCCcccEEEe-ccCCCC--C-hHH---HHHHHHHHHHcCceeEEEeecCcHHHHHHHHHHHHhc
Q 020098 143 GRQSVLAALKDSLFRLGLSSVELYQL-HWAGIW--G-NEG---FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKR 215 (331)
Q Consensus 143 ~~~~i~~~v~~sL~~Lg~d~iDl~~l-h~p~~~--~-~~~---~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~ 215 (331)
+.+.+.+..++.+ .-|-|.||+=-- -+|... + .+| +...++.+++.-.+ -|.|-++.++.++++++.
T Consensus 36 ~~~~a~~~a~~~~-~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~-~ISIDT~~~~va~~AL~~---- 109 (282)
T PRK11613 36 SLIDAVKHANLMI-NAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEV-WISVDTSKPEVIRESAKA---- 109 (282)
T ss_pred CHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEECCCHHHHHHHHHc----
Confidence 4454444444433 337788887432 335442 2 233 55566777754233 389999999999999764
Q ss_pred CCCeeeeeecccccccCccccchhHHHHHcCCeEEEccc
Q 020098 216 GIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (331)
Q Consensus 216 ~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~ 254 (331)
|.. .+|-+ ..+ . .. +.++.+++.|..++.+..
T Consensus 110 Gad-iINDI-~g~-~-d~---~~~~~~a~~~~~vVlmh~ 141 (282)
T PRK11613 110 GAH-IINDI-RSL-S-EP---GALEAAAETGLPVCLMHM 141 (282)
T ss_pred CCC-EEEEC-CCC-C-CH---HHHHHHHHcCCCEEEEcC
Confidence 222 22222 122 1 22 378889999999988743
No 176
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=42.37 E-value=2.1e+02 Score=27.23 Aligned_cols=113 Identities=16% Similarity=0.150 Sum_probs=62.0
Q ss_pred HHHHHHHHHCCCCeEECCcC---------cCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHH
Q 020098 78 KAAFDTSLDNGITFFDTAEV---------YGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL 148 (331)
Q Consensus 78 ~~~l~~A~~~Gvn~~Dta~~---------Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~ 148 (331)
.+.++...++|+|.+-..-. .|.+++ -+.+-++++...... =+.+-+-.=+|. ...+.+.++
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~~~------~~~~~~ai~~lr~~g-~~~v~iDli~Gl--Pgqt~~~~~ 168 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRIHS------QKQIIKAIENAKKAG-FENISIDLIYDT--PLDNKKLLK 168 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCC------HHHHHHHHHHHHHcC-CCEEEEEeecCC--CCCCHHHHH
Confidence 35566666779998743222 233333 344444554443110 012222232332 457788888
Q ss_pred HHHHHHHHhhCCCcccEEEecc-CCC---------CChHHH-HHHHHHHHHcCceeEEEeecCc
Q 020098 149 AALKDSLFRLGLSSVELYQLHW-AGI---------WGNEGF-IDGLGDAVEQGLVKAVGVSNYS 201 (331)
Q Consensus 149 ~~v~~sL~~Lg~d~iDl~~lh~-p~~---------~~~~~~-~~~L~~l~~~G~i~~iGvs~~~ 201 (331)
+.++..+ +++.++|.++.+.- |.. .+.++. ..+.+.|.+.|. ..+++|||.
T Consensus 169 ~~l~~~~-~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~yeis~fa 230 (350)
T PRK08446 169 EELKLAK-ELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGF-KQYEISNFG 230 (350)
T ss_pred HHHHHHH-hcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCC-cEEEeehhh
Confidence 8887654 58999999988753 322 112233 333555666675 468888875
No 177
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=42.08 E-value=1.4e+02 Score=26.52 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHCCCCeEECCcCcCC
Q 020098 73 KMKAAKAAFDTSLDNGITFFDTAEVYGS 100 (331)
Q Consensus 73 ~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~ 100 (331)
++++..++.+.+.+.|..|+=|+..|+.
T Consensus 134 ~~e~i~~a~~~~~~agadfIKTsTG~~~ 161 (221)
T PRK00507 134 TDEEKVKACEIAKEAGADFVKTSTGFST 161 (221)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCC
Confidence 3466677777777778887777777753
No 178
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=41.88 E-value=3e+02 Score=25.80 Aligned_cols=128 Identities=11% Similarity=0.097 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHCCCCeEEC---Cc-----CcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHH
Q 020098 74 MKAAKAAFDTSLDNGITFFDT---AE-----VYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQ 145 (331)
Q Consensus 74 ~~~~~~~l~~A~~~Gvn~~Dt---a~-----~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~ 145 (331)
.++..+....+.+.|+..||- ++ .||.|.+ .-+--+.+.+.++...... ..++-|+.|+... ++ +.+
T Consensus 74 p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~--Ll~~~~~~~eiv~avr~~~-~~~~pVsvKiR~g-~~-~~~ 148 (312)
T PRK10550 74 PQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGAT--LLKDPELIYQGAKAMREAV-PAHLPVTVKVRLG-WD-SGE 148 (312)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchH--hhcCHHHHHHHHHHHHHhc-CCCcceEEEEECC-CC-Cch
Confidence 356666667778889999993 22 2554311 0011455566555543211 1257788886431 22 122
Q ss_pred HHHHHHHHHHHhhCCCcccEEEeccCCC---CChHH-HHHHHHHHHHcCceeEEEeecC-cHHHHHHHHH
Q 020098 146 SVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEG-FIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYE 210 (331)
Q Consensus 146 ~i~~~v~~sL~~Lg~d~iDl~~lh~p~~---~~~~~-~~~~L~~l~~~G~i~~iGvs~~-~~~~l~~~~~ 210 (331)
.. ..+-+.|+..| +|.+.+|.-.. +.... =|+...++++.-.|.-||..+. +++..+++++
T Consensus 149 ~~-~~~a~~l~~~G---vd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~ 214 (312)
T PRK10550 149 RK-FEIADAVQQAG---ATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMA 214 (312)
T ss_pred HH-HHHHHHHHhcC---CCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHh
Confidence 22 34555566667 57777886432 11111 2778888888777887887775 7777777754
No 179
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=41.77 E-value=1.5e+02 Score=32.43 Aligned_cols=105 Identities=12% Similarity=0.088 Sum_probs=63.5
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCC-----CcccEEEeccCCCCC--hHHHHHH
Q 020098 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL-----SSVELYQLHWAGIWG--NEGFIDG 182 (331)
Q Consensus 110 E~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~-----d~iDl~~lh~p~~~~--~~~~~~~ 182 (331)
|+-+-++|+...+..+.+-++|.|-+- .+-+-..++...+++.- .-+.++.++.|+... ..+...+
T Consensus 556 ~~~L~~~I~~~~~~~~p~~I~V~tTc~-------~eiIGDDi~~vi~~~~~~~~~~~~~pvi~v~tpgF~Gs~~~G~~~a 628 (917)
T PRK14477 556 WENLKQGILRVIEKFKPKVIGVMTTGL-------TETMGDDVRSAIVQFREEHPELDDVPVVWASTPDYCGSLQEGYAAA 628 (917)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCch-------HhhhhcCHHHHHHHHHhhccccCCCeEEEeeCCCCccCHHHHHHHH
Confidence 777778877754433356778887764 23333333333333332 236899999998732 2333333
Q ss_pred HHHHH---------HcCceeEEEeecCcHHHHHHHHHHHHhcCCCeee
Q 020098 183 LGDAV---------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (331)
Q Consensus 183 L~~l~---------~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~ 221 (331)
++.+. ..++|.-||-++.++..++++.+.++..|+.+.+
T Consensus 629 ~~aiv~~~~~~~~~~~~~VNli~~~~~~~gD~~eik~lL~~~Gl~v~~ 676 (917)
T PRK14477 629 VEAIVATLPEPGERIPGQVNILPGAHLTPADVEEIKEIVEAFGLDPVV 676 (917)
T ss_pred HHHHHHHhccccCCCCCcEEEeCCCCCChhhHHHHHHHHHHcCCceEE
Confidence 32222 3467888887776677778887778888876644
No 180
>PRK12928 lipoyl synthase; Provisional
Probab=41.71 E-value=2.9e+02 Score=25.60 Aligned_cols=81 Identities=20% Similarity=0.261 Sum_probs=52.1
Q ss_pred CChHHHHHHHHHHHHcC---cee---EEEeecCcHHHHHHHHHHHHhcCCCeeeeee-cccc-------cccC---cccc
Q 020098 174 WGNEGFIDGLGDAVEQG---LVK---AVGVSNYSEKRLRNAYEKLKKRGIPLASNQV-NYSL-------IYRK---PEEN 236 (331)
Q Consensus 174 ~~~~~~~~~L~~l~~~G---~i~---~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~-~~n~-------~~~~---~~~~ 236 (331)
...++.++.++.+++.| .++ -+|+ +-+.+++.+.+..++..+. +.+.+ +|.. +.+. .+..
T Consensus 185 ~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lrel~~--d~v~i~~Yl~p~~~~~~v~~~~~~~~f~ 261 (290)
T PRK12928 185 ADYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRAVGC--DRLTIGQYLRPSLAHLPVQRYWTPEEFE 261 (290)
T ss_pred CCHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHhcCC--CEEEEEcCCCCCccCCceeeccCHHHHH
Confidence 35688899999999998 333 4677 6677888888777766553 33322 2221 1111 1112
Q ss_pred chhHHHHHcCCeEEEcccCcc
Q 020098 237 GVKAACDELGITLIAYCPIAQ 257 (331)
Q Consensus 237 ~~l~~~~~~gi~v~a~s~l~~ 257 (331)
.+-+.+.+.|...++.+||-.
T Consensus 262 ~~~~~~~~~g~~~~~~~p~~r 282 (290)
T PRK12928 262 ALGQIARELGFSHVRSGPLVR 282 (290)
T ss_pred HHHHHHHHcCCceeEecCccc
Confidence 477778888988888888864
No 181
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=41.61 E-value=1.2e+02 Score=30.23 Aligned_cols=12 Identities=33% Similarity=0.432 Sum_probs=6.3
Q ss_pred HHHhhCCCcccE
Q 020098 154 SLFRLGLSSVEL 165 (331)
Q Consensus 154 sL~~Lg~d~iDl 165 (331)
.|.++|++.|.+
T Consensus 34 ~Ld~~Gv~~IE~ 45 (448)
T PRK12331 34 KLDNAGYHSLEM 45 (448)
T ss_pred HHHHcCCCEEEe
Confidence 345555555555
No 182
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=41.55 E-value=3.1e+02 Score=25.95 Aligned_cols=24 Identities=8% Similarity=0.152 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECC
Q 020098 72 RKMKAAKAAFDTSLDNGITFFDTA 95 (331)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gvn~~Dta 95 (331)
.+.++..+++...-++||..|+.+
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg 44 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVT 44 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe
Confidence 455888889998889999999985
No 183
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=41.51 E-value=3.5e+02 Score=26.49 Aligned_cols=146 Identities=11% Similarity=0.122 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHh-ccCCC---CCCcEEEEecCCCCCCCCCHHHHHH
Q 020098 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKE-RKQRD---PEVEVTVATKFAALPWRLGRQSVLA 149 (331)
Q Consensus 74 ~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~-~~~~~---~R~~~~i~tK~~~~~~~~~~~~i~~ 149 (331)
.+.=.+-++.|++.|-..+-==+..|+ -..+-+.+-. .+..+ |=-+.+. +......+.+.+.+.+
T Consensus 76 ~~~E~~K~~~A~~~GADtiMDLStGgd---------l~~iR~~il~~s~vpvGTVPiYqa~~--~~~~~~~~mt~d~~~~ 144 (423)
T TIGR00190 76 IEEEVEKALIAIKYGADTVMDLSTGGD---------LDEIRKAILDAVPVPVGTVPIYQAAE--KVHGAVEDMDEDDMFR 144 (423)
T ss_pred HHHHHHHHHHHHHcCCCeEeeccCCCC---------HHHHHHHHHHcCCCCccCccHHHHHH--HhcCChhhCCHHHHHH
Confidence 344445689999999874442233455 4444444433 22111 0000000 0000113567777777
Q ss_pred HHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecCcHHHHHHHHHHHHhcCCCeeeeeeccccc
Q 020098 150 ALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLI 229 (331)
Q Consensus 150 ~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~ 229 (331)
.+++-.+ |-+|.+-||.-- ..+.++.++++|++ .|+-+-....+..++..- -.=||+
T Consensus 145 ~ie~qa~----dGVDfmTiH~Gi------~~~~~~~~~~~~R~--~giVSRGGs~~~~WM~~~-----------~~ENPl 201 (423)
T TIGR00190 145 AIEKQAK----DGVDFMTIHAGV------LLEYVERLKRSGRI--TGIVSRGGAILAAWMLHH-----------HKENPL 201 (423)
T ss_pred HHHHHHH----hCCCEEEEccch------hHHHHHHHHhCCCc--cCeecCcHHHHHHHHHHc-----------CCcCch
Confidence 7776664 568889999742 36788899999954 677666555444443221 122333
Q ss_pred ccCccccchhHHHHHcCCeEEEcccCcccc
Q 020098 230 YRKPEENGVKAACDELGITLIAYCPIAQGA 259 (331)
Q Consensus 230 ~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~ 259 (331)
...-. .+++.|++++|.+ +|+.|+
T Consensus 202 ye~fD--~lLeI~~~yDVtl----SLGDgl 225 (423)
T TIGR00190 202 YKNFD--YILEIAKEYDVTL----SLGDGL 225 (423)
T ss_pred HHHHH--HHHHHHHHhCeee----eccCCc
Confidence 33322 4888888888876 345554
No 184
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=41.41 E-value=4e+02 Score=27.73 Aligned_cols=103 Identities=9% Similarity=0.100 Sum_probs=61.4
Q ss_pred CceeEEEeecCcHHHHHHHHHHHHhcCCCeee-eeecccccccCccccchhHHHHHcCCeEEEcccCccccccCCCCCCC
Q 020098 190 GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS-NQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQN 268 (331)
Q Consensus 190 G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~-~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~~~ 268 (331)
.++..+-=.+.+.+.+.++++.+......+.+ +.+.+--.+|+. .+.+++++.++-++.-+.-...
T Consensus 154 ~~~~~~~QTT~~~~~~~~~~~~l~~~~~~~~~~~tiC~at~~Rq~---a~~~la~~~d~~~vvGg~~SsN---------- 220 (647)
T PRK00087 154 KKICVVSQTTEKQENFEKVLKELKKKGKEVKVFNTICNATEVRQE---AAEKLAKKVDVMIVVGGKNSSN---------- 220 (647)
T ss_pred CCEEEEEcCCCcHHHHHHHHHHHHHhCCCcccCCCcchhhhhHHH---HHHHHHhhCCEEEEECCCCCcc----------
Confidence 45555555567777777777766542222222 222222222332 4888888888887774333321
Q ss_pred CCCCCCCCccchhHHhhHHHHHHHHHHHHHhcCC------CHHHHHHHhhh------hcccccchHHHHH
Q 020098 269 PPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSK------TSTQNSPCMSN------SLAKQILFQQLEK 326 (331)
Q Consensus 269 ~p~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~------s~~qval~~~l------~~~g~~~~~~l~e 326 (331)
- .+|.++|+++|. ++.++.-.|.- --.|+|||+.|-+
T Consensus 221 -----------t----------~~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~~vgitagaStP~~~i~ 269 (647)
T PRK00087 221 -----------T----------TKLYEICKSNCTNTIHIENAGELPEEWFKGVKIIGVTAGASTPDWIIE 269 (647)
T ss_pred -----------H----------HHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEeccCCCHHHHH
Confidence 1 178899998874 57888888854 2378999965544
No 185
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=41.26 E-value=2.1e+02 Score=25.50 Aligned_cols=50 Identities=12% Similarity=0.014 Sum_probs=30.7
Q ss_pred chhHHHHHcCCeEEEcccCccccccCCCCCCCCCCCCCCCccchhHHhhHHHHHHHHHHHHHhcCC
Q 020098 237 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSK 302 (331)
Q Consensus 237 ~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~ 302 (331)
..+++|++.|...+... . |.... .....+.++...+.+..+.+.|+++|+
T Consensus 89 ~~i~~a~~lga~~i~~~--~-g~~~~-------------~~~~~~~~~~~~~~l~~l~~~a~~~Gv 138 (258)
T PRK09997 89 AAIRYARALGNKKINCL--V-GKTPA-------------GFSSEQIHATLVENLRYAANMLMKEDI 138 (258)
T ss_pred HHHHHHHHhCCCEEEEC--C-CCCCC-------------CCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 48899999999977531 1 11100 011233455666677788888888886
No 186
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=41.23 E-value=2.8e+02 Score=25.25 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=23.9
Q ss_pred chhhHHHHHHHHHHHHHCCCCeEECCcCcC
Q 020098 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYG 99 (331)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg 99 (331)
+.++.+...+.++..++.|++-+-..-..|
T Consensus 16 g~iD~~~~~~~i~~l~~~Gv~gl~v~GstG 45 (284)
T cd00950 16 GSVDFDALERLIEFQIENGTDGLVVCGTTG 45 (284)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCc
Confidence 568889999999999999999776544443
No 187
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=41.03 E-value=3.4e+02 Score=26.18 Aligned_cols=92 Identities=15% Similarity=0.097 Sum_probs=62.2
Q ss_pred EEEeccCCC-------------CChHHHHHHHHH-HHHcCc---eeEEEee--cCcHHHHHHHHHHHHhcCCCeeeeeec
Q 020098 165 LYQLHWAGI-------------WGNEGFIDGLGD-AVEQGL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVN 225 (331)
Q Consensus 165 l~~lh~p~~-------------~~~~~~~~~L~~-l~~~G~---i~~iGvs--~~~~~~l~~~~~~~~~~~~~~~~~q~~ 225 (331)
.+.||.++. ++.+++++++.+ +.+.|+ |+++=+. |.+.+.+.++.+.+.. .+..++-++
T Consensus 237 aiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~--~~~~VnlIp 314 (368)
T PRK14456 237 AVSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASR--FFCKINLID 314 (368)
T ss_pred EEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhc--CCCeeEEee
Confidence 367787654 245788888875 445552 4444444 4566778888777653 346778889
Q ss_pred ccccccCcccc-------chhHHHHHcCCeEEEcccCccc
Q 020098 226 YSLIYRKPEEN-------GVKAACDELGITLIAYCPIAQG 258 (331)
Q Consensus 226 ~n~~~~~~~~~-------~~l~~~~~~gi~v~a~s~l~~G 258 (331)
||++....... .+.+..+++|+.+......+.-
T Consensus 315 yn~~~~~~~~~ps~e~i~~F~~~L~~~Gi~vtvR~~~G~d 354 (368)
T PRK14456 315 YNSIVNIKFEPVCSSTRERFRDRLLDAGLQVTVRKSYGTT 354 (368)
T ss_pred eccCCCCCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCcc
Confidence 99887654331 4677788899999998877653
No 188
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=41.02 E-value=1e+02 Score=29.33 Aligned_cols=83 Identities=14% Similarity=0.155 Sum_probs=54.2
Q ss_pred ccEEEeccCCCCChHHHHHHHHHHHHcCcee-EEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHH
Q 020098 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (331)
Q Consensus 163 iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~-~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~ 241 (331)
.++.++..|-. .+-++.+.+|+++.-+. ..|=|.++.+.+..+++. -.++++|+...-+-.-..-..+.+.
T Consensus 202 ~~i~~iEeP~~---~~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~-----~~~d~v~~d~~~~GGit~~~~~~~l 273 (352)
T cd03325 202 YRLLFIEEPVL---PENVEALAEIAARTTIPIATGERLFSRWDFKELLED-----GAVDIIQPDISHAGGITELKKIAAM 273 (352)
T ss_pred cCCcEEECCCC---ccCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHh-----CCCCEEecCccccCCHHHHHHHHHH
Confidence 35555665543 22377888888876654 556667788888888653 3477777775443211111258999
Q ss_pred HHHcCCeEEEcc
Q 020098 242 CDELGITLIAYC 253 (331)
Q Consensus 242 ~~~~gi~v~a~s 253 (331)
|+++||.+..++
T Consensus 274 A~~~gi~~~~h~ 285 (352)
T cd03325 274 AEAYDVALAPHC 285 (352)
T ss_pred HHHcCCcEeccC
Confidence 999999998765
No 189
>PRK01060 endonuclease IV; Provisional
Probab=40.92 E-value=1.7e+02 Score=26.38 Aligned_cols=92 Identities=20% Similarity=0.226 Sum_probs=48.1
Q ss_pred EEEeecCcHHHHHHHHHHHHhcCCCeeeeeeccc-cc--ccCc----cccchhHHHHHcCCe---EEEcccCccccccCC
Q 020098 194 AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYS-LI--YRKP----EENGVKAACDELGIT---LIAYCPIAQGALTGK 263 (331)
Q Consensus 194 ~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n-~~--~~~~----~~~~~l~~~~~~gi~---v~a~s~l~~G~L~~~ 263 (331)
.+|+-+.....++++++.+...| ++.+|+... +. .... +...+.+.++++|+. +..+.|+-..+ +.
T Consensus 3 ~~g~~~~~~~~~~~~l~~~~~~G--~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl-~~- 78 (281)
T PRK01060 3 LIGAHVSAAGGLEGAVAEAAEIG--ANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISPEDILVHAPYLINL-GN- 78 (281)
T ss_pred eEEEeeecCCCHHHHHHHHHHcC--CCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCCCceEEecceEecC-CC-
Confidence 46766554444777766666554 555655432 11 1101 011377788899998 55555543211 10
Q ss_pred CCCCCCCCCCCCCccchhHHhhHHHHHHHHHHHHHhcCCC
Q 020098 264 YTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKT 303 (331)
Q Consensus 264 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s 303 (331)
..++..++..+.+....++|+++|++
T Consensus 79 --------------~d~~~r~~s~~~~~~~i~~A~~lga~ 104 (281)
T PRK01060 79 --------------PNKEILEKSRDFLIQEIERCAALGAK 104 (281)
T ss_pred --------------CCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 12233444455555666667777654
No 190
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=40.92 E-value=3.9e+02 Score=30.15 Aligned_cols=171 Identities=9% Similarity=0.044 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHHHHC-CCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCC-C-CCcEEEEecCCCC-----------
Q 020098 73 KMKAAKAAFDTSLDN-GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRD-P-EVEVTVATKFAAL----------- 138 (331)
Q Consensus 73 ~~~~~~~~l~~A~~~-Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~-~-R~~~~i~tK~~~~----------- 138 (331)
+++...+.+...++. |+|+|=-+..-++.+ -+.|.+.++...-+. + .....++|-....
T Consensus 274 ~p~~~a~~~~~~~~~ggv~IIGGCCGTtPeH-------I~ala~~l~~~~p~~~~~~~~~~~~s~~~~~~~~~~~~~~~I 346 (1178)
T TIGR02082 274 TPDELAKALADFAAEGGLNIVGGCCGTTPDH-------IRAIAEAVKNIKPRQRPVLYEPSRLSGLEAITIAQDSNFVNI 346 (1178)
T ss_pred CHHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHHHHHHhhcCCCCCCCCcccceeecCceEEeecCCCceEEE
Confidence 346677777788876 699997555444422 456677776543211 0 1111122222110
Q ss_pred --CCC-------------CCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHH-cCce--eEEEeecC
Q 020098 139 --PWR-------------LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVE-QGLV--KAVGVSNY 200 (331)
Q Consensus 139 --~~~-------------~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~-~G~i--~~iGvs~~ 200 (331)
..+ .+.+.+.+..++. ..-|-+.||+-.= .+ ..+.++.+..+..+.+ .-.+ --|-+-++
T Consensus 347 GEr~N~~G~k~~~~~i~~~d~~~a~~~A~~q-ve~GA~iIDVn~~-~~-~vd~~eem~rvv~~i~~~~~~~~vPlsIDS~ 423 (1178)
T TIGR02082 347 GERTNVAGSKKFRRLIIAEDYDEALDIAKQQ-VENGAQILDINVD-YG-MLDGVAAMKRFLNLLASEPDISTVPLMLDSS 423 (1178)
T ss_pred eeccchhhhHHHHHHHHcCCHHHHHHHHHHH-HHCCCCEEEECCC-CC-CCCHHHHHHHHHHHHHhccCCCCCeEEEeCC
Confidence 001 1222222222222 2458899998752 11 1234444444444444 3212 34778889
Q ss_pred cHHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHHHHHcCCeEEEcccCccc
Q 020098 201 SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (331)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G 258 (331)
.++.++..++.+. .+..+|-+..--.+...+ .+++.|++.|..++.+.--..|
T Consensus 424 ~~~v~eaaLk~~~---G~~IINsIs~~~g~~~~~--~~~~l~~~yga~vV~m~~de~G 476 (1178)
T TIGR02082 424 EWAVLEAGLKCIQ---GKCIVNSISLKDGEERFI--ETAKLIKEYGAAVVVMAFDEEG 476 (1178)
T ss_pred cHHHHHHHHHhcC---CCCEEEeCCCCCCCccHH--HHHHHHHHhCCCEEEEecCCCC
Confidence 9999999977632 355555554432222212 4899999999999998754444
No 191
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=40.79 E-value=1.1e+02 Score=24.26 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=46.4
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCC---CcccEEEeccCCC--CChHHHHHHHHHHHHc
Q 020098 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL---SSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (331)
Q Consensus 126 R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~---d~iDl~~lh~p~~--~~~~~~~~~L~~l~~~ 189 (331)
|=.+.|+-|++. ....+..+++.+.+.++.+.. ...|++++-.+.. .+..++.+.|..|.+.
T Consensus 48 R~G~~VsKK~~~--~AV~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 48 RFGISISQKVSK--KAVVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAECNYEQFLQELEQLLIQ 114 (122)
T ss_pred EEEEEEeccccc--chhhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 667778888653 356788899999998887632 3579999998875 4577888888777765
No 192
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=40.56 E-value=2.5e+02 Score=26.35 Aligned_cols=91 Identities=20% Similarity=0.156 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 020098 76 AAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSL 155 (331)
Q Consensus 76 ~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL 155 (331)
+-.+.+..+++.|-.+|=++.|+|+ -++.+.++.++. ..+...-| ......+...+.+..
T Consensus 110 ~g~e~l~e~l~~~~gvIl~~~H~gn---------~E~~~~~l~~~~-----~~~~~~yr------p~~np~ld~~i~~~R 169 (308)
T COG1560 110 EGLEHLEEALANGRGVILVTPHFGN---------WELGGRALAQQG-----PKVTAMYR------PPKNPLLDWLITRGR 169 (308)
T ss_pred cCHHHHHHHHHcCCCEEEEecCcch---------HHHHHHHHHHhC-----CCeeEEec------CCCCHHHHHHHHHHH
Confidence 4456788888998888888899998 889999998765 23322222 355677888899999
Q ss_pred HhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEee
Q 020098 156 FRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVS 198 (331)
Q Consensus 156 ~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs 198 (331)
++.|...++ ...+-+..|-+..++|.+ +|+-
T Consensus 170 ~r~~~~~~~----------~~~~~ir~li~~Lk~G~~--v~~l 200 (308)
T COG1560 170 ERFGGRLLP----------RKGEGIRQLIKALKQGEA--VGYL 200 (308)
T ss_pred HhcCCcccC----------CCchhHHHHHHHHhcCCe--EEEe
Confidence 999988765 222445555555556644 4554
No 193
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=40.25 E-value=1.5e+02 Score=26.76 Aligned_cols=99 Identities=11% Similarity=0.187 Sum_probs=50.5
Q ss_pred HHHHHHHHhhCCCcccEEEeccCCC-CChHHHHHHHHH-HHHcCceeEEEeecC-----cHHHHHHHHHHHHhcCCCeee
Q 020098 149 AALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGD-AVEQGLVKAVGVSNY-----SEKRLRNAYEKLKKRGIPLAS 221 (331)
Q Consensus 149 ~~v~~sL~~Lg~d~iDl~~lh~p~~-~~~~~~~~~L~~-l~~~G~i~~iGvs~~-----~~~~l~~~~~~~~~~~~~~~~ 221 (331)
+.++..|+-+| +|||++=+-|=.. ...+++++..-+ +++-|.--+.| ..+ ....++++++.|+..| |++
T Consensus 12 ~~~~d~Le~~g-~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~~~Yl~~~k~lG--f~~ 87 (237)
T TIGR03849 12 KFVEDYLKVCG-DYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKFDEYLNECDELG--FEA 87 (237)
T ss_pred HHHHHHHHHhh-hheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhHHHHHHHHHHcC--CCE
Confidence 45667777777 7888888877444 223334444333 34444444444 111 1134455555555433 455
Q ss_pred eeecccccccCccc-cchhHHHHHcCCeEEE
Q 020098 222 NQVNYSLIYRKPEE-NGVKAACDELGITLIA 251 (331)
Q Consensus 222 ~q~~~n~~~~~~~~-~~~l~~~~~~gi~v~a 251 (331)
+.+.-..++-..+. ..+++.++++|..+..
T Consensus 88 IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~ 118 (237)
T TIGR03849 88 VEISDGSMEISLEERCNLIERAKDNGFMVLS 118 (237)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHhCCCeEec
Confidence 54444444433322 1366666666666653
No 194
>PRK09061 D-glutamate deacylase; Validated
Probab=40.17 E-value=4e+02 Score=26.78 Aligned_cols=115 Identities=13% Similarity=0.103 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 020098 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (331)
Q Consensus 75 ~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~s 154 (331)
++..++++.|++.|+..|=+...|-.+.+ ...+-+.++... +.+..|.+.+..... .+......++++.
T Consensus 169 ~~m~~ll~~al~~Ga~gis~~~~y~p~~~------~~eL~~l~~~A~----~~g~~v~~H~e~~~~-~~~~~e~~av~~~ 237 (509)
T PRK09061 169 AEILELLEQGLDEGALGIGIGAGYAPGTG------HKEYLELARLAA----RAGVPTYTHVRYLSN-VDPRSSVDAYQEL 237 (509)
T ss_pred HHHHHHHHHHHHCCCCEEecCCccCCCCC------HHHHHHHHHHHH----HcCCEEEEEecCccc-CCchhHHHHHHHH
Confidence 45788899999999999987666654444 666666666554 456777777743110 1223333445555
Q ss_pred HHhhCCCcccEEEeccCC--CCChHHHHHHHHHHHHcCceeEEEeecC
Q 020098 155 LFRLGLSSVELYQLHWAG--IWGNEGFIDGLGDAVEQGLVKAVGVSNY 200 (331)
Q Consensus 155 L~~Lg~d~iDl~~lh~p~--~~~~~~~~~~L~~l~~~G~i~~iGvs~~ 200 (331)
++.....-.-+.+.|-.. .....+.++.+++++++|.--..-++-|
T Consensus 238 i~lA~~~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~P~ 285 (509)
T PRK09061 238 IAAAAETGAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAYPY 285 (509)
T ss_pred HHHHHHhCCCEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEecCc
Confidence 443321112355556433 2346788899999999985333344433
No 195
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=40.10 E-value=1.4e+02 Score=29.98 Aligned_cols=124 Identities=14% Similarity=0.213 Sum_probs=64.5
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCC--CChHHHHHHHHHHH
Q 020098 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAV 187 (331)
Q Consensus 110 E~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~--~~~~~~~~~L~~l~ 187 (331)
-+-+|.+|+.. .+++|+-.+.. .++....+..-+.+.+++-++.- -=+-+.--+. .+.......+.+++
T Consensus 341 ~~dlG~~L~~~------~~l~VsINl~a--~Dl~s~rli~~~~~~l~~~~v~p-qQI~lElTER~f~D~~~~~~iI~r~R 411 (524)
T COG4943 341 FRDLGDLLRQH------RDLHVSINLSA--SDLASPRLIDRLNRKLAQYQVRP-QQIALELTERTFADPKKMTPIILRLR 411 (524)
T ss_pred HHHhHHHHHhC------cceEEEEeeee--hhhcCchHHHHHHHHHHhcCcCh-HHheeehhhhhhcCchhhhHHHHHHH
Confidence 44567777765 47777777754 34555556666666666655431 1111221121 34556677788888
Q ss_pred HcCc---eeEEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccCcc-------ccchhHHHHHcCCeEEE
Q 020098 188 EQGL---VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPE-------ENGVKAACDELGITLIA 251 (331)
Q Consensus 188 ~~G~---i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~-------~~~~l~~~~~~gi~v~a 251 (331)
+.|. |.-+|..--+...+.+ .+.|++-+.-+..+.-.. -..+++.+|++|+.+++
T Consensus 412 eaG~~IyIDDFGTGYSnL~YLq~---------L~VDaLKIDKsFvdtlg~~~a~~~I~~hII~MAk~L~L~iVa 476 (524)
T COG4943 412 EAGHEIYIDDFGTGYSNLHYLQS---------LPVDALKIDKSFVDTLGTDSASHLIAPHIIEMAKSLGLKIVA 476 (524)
T ss_pred hcCCeEEEccCcCcchhHHHHhh---------CCccceeccHHHHHhhccCcccchhHHHHHHHHHHcCCcEEe
Confidence 8885 3333332212222221 233333333332222110 01478888888888887
No 196
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=40.09 E-value=1.2e+02 Score=24.67 Aligned_cols=60 Identities=15% Similarity=0.113 Sum_probs=45.3
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCC----CcccEEEeccCCC--CChHHHHHHHHHHHH
Q 020098 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL----SSVELYQLHWAGI--WGNEGFIDGLGDAVE 188 (331)
Q Consensus 126 R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~----d~iDl~~lh~p~~--~~~~~~~~~L~~l~~ 188 (331)
|=.+.|+-|+|. ...+..+++.+.++++.+.. .-.|++++-.+.. .+..++-+.|+.+.+
T Consensus 48 RvG~~VSKKvG~---AV~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 48 RVGFTVTKKNGN---AVERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred EEEEEEecccCc---chHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 678888889873 57788999999999887643 4579999998875 445666666666554
No 197
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=39.81 E-value=3.5e+02 Score=26.01 Aligned_cols=135 Identities=14% Similarity=0.152 Sum_probs=76.3
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHH----HHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHH
Q 020098 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETL----LGRFIKERKQRDPEVEVTVATKFAALPWRLGRQS 146 (331)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~----iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~ 146 (331)
..+.++..++++.+.+.|++.|-.+ | | |-. +-+.++.......-..+.|+|-.- .. .
T Consensus 89 ~ls~eei~~~i~~~~~~Gv~~I~~t---G-G--------EPllr~dl~eli~~l~~~~gi~~i~itTNG~----lL-~-- 149 (373)
T PLN02951 89 LLSQDEIVRLAGLFVAAGVDKIRLT---G-G--------EPTLRKDIEDICLQLSSLKGLKTLAMTTNGI----TL-S-- 149 (373)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEE---C-C--------CCcchhhHHHHHHHHHhcCCCceEEEeeCcc----hH-H--
Confidence 3667899999999999999877643 3 2 222 223333221100012466666441 11 1
Q ss_pred HHHHHHHHHHhhCCCcccEEEeccCCC---------CChHHHHHHHHHHHHcCc--e--eEEEeecCcHHHHHHHHHHHH
Q 020098 147 VLAALKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGL--V--KAVGVSNYSEKRLRNAYEKLK 213 (331)
Q Consensus 147 i~~~v~~sL~~Lg~d~iDl~~lh~p~~---------~~~~~~~~~L~~l~~~G~--i--~~iGvs~~~~~~l~~~~~~~~ 213 (331)
+.+ ..|+..|++.|- +-|+..++ ...+.+++.++.+++.|. | ..+-+-+++.+++.++++.+.
T Consensus 150 --~~~-~~L~~aGld~Vn-ISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv~~g~N~~Ei~~li~~a~ 225 (373)
T PLN02951 150 --RKL-PRLKEAGLTSLN-ISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVVMRGFNDDEICDFVELTR 225 (373)
T ss_pred --HHH-HHHHhCCCCeEE-EeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEecCCCCHHHHHHHHHHHH
Confidence 222 234555655443 23344332 235789999999999985 2 234445677788999988887
Q ss_pred hcCCCeeeeeecccccc
Q 020098 214 KRGIPLASNQVNYSLIY 230 (331)
Q Consensus 214 ~~~~~~~~~q~~~n~~~ 230 (331)
..++ .+.-++|.++.
T Consensus 226 ~~gi--~vr~ie~mP~~ 240 (373)
T PLN02951 226 DKPI--NVRFIEFMPFD 240 (373)
T ss_pred hCCC--eEEEEEcccCC
Confidence 6553 34444444444
No 198
>PLN02540 methylenetetrahydrofolate reductase
Probab=39.71 E-value=4.4e+02 Score=27.09 Aligned_cols=153 Identities=19% Similarity=0.183 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHH--HHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 020098 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRF--IKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (331)
Q Consensus 74 ~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~--l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v 151 (331)
.+...+.+++-.+.|-.|+|.+..-|...+ +.-+.-+ +++.. .+-..-.+.. .+.++..+...+
T Consensus 14 ~~nL~~~~~rl~~~~P~FisVT~gAgGst~------~~Tl~la~~lq~~~------Gie~i~HLTC--rd~n~~~L~~~L 79 (565)
T PLN02540 14 VDNLFERMDRMVAHGPLFCDITWGAGGSTA------DLTLDIANRMQNMI------CVETMMHLTC--TNMPVEKIDHAL 79 (565)
T ss_pred HHHHHHHHHHHhccCCCEEEeCCCCCCCcH------HHHHHHHHHHHHhc------CCCeeEEeee--cCCCHHHHHHHH
Confidence 455666677777889999998754443222 4443333 22221 1222222211 456777787777
Q ss_pred HHHHHhhCCCcccEEEeccCCCC----------ChHHHHHHHHHHHHc-CceeEEEeecCcH------------------
Q 020098 152 KDSLFRLGLSSVELYQLHWAGIW----------GNEGFIDGLGDAVEQ-GLVKAVGVSNYSE------------------ 202 (331)
Q Consensus 152 ~~sL~~Lg~d~iDl~~lh~p~~~----------~~~~~~~~L~~l~~~-G~i~~iGvs~~~~------------------ 202 (331)
++. +.+|+. .+|.|-...+. ......+-++.+++. |..-.|||.++..
T Consensus 80 ~~a-~~~GIr--NILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~~~~ 156 (565)
T PLN02540 80 ETI-KSNGIQ--NILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPEAYQ 156 (565)
T ss_pred HHH-HHCCCC--EEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCcccccccccCCCChH
Confidence 776 888876 46666542210 112344555555554 4456789987632
Q ss_pred HHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHHHHHcCCe
Q 020098 203 KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGIT 248 (331)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~ 248 (331)
..+..+.+-. ..|..|.+-|.-|..-. .. ..++.|++.||.
T Consensus 157 ~dl~~Lk~Kv-dAGAdFiITQlfFD~d~---f~-~f~~~~r~~Gi~ 197 (565)
T PLN02540 157 KDLAYLKEKV-DAGADLIITQLFYDTDI---FL-KFVNDCRQIGIT 197 (565)
T ss_pred HHHHHHHHHH-HcCCCEEeeccccCHHH---HH-HHHHHHHhcCCC
Confidence 2344444332 24567888888876522 22 378899999854
No 199
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=39.66 E-value=2.5e+02 Score=24.21 Aligned_cols=102 Identities=14% Similarity=0.226 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhhCCCcccEEEeccCCC---CChHHHHHHHHHHHHcCceeEEEeecCcH--HHHHHHHHHHHhcCCCe
Q 020098 145 QSVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNYSE--KRLRNAYEKLKKRGIPL 219 (331)
Q Consensus 145 ~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~---~~~~~~~~~L~~l~~~G~i~~iGvs~~~~--~~l~~~~~~~~~~~~~~ 219 (331)
......+.+.++..+..- +-+.+.-++. .........+..|++.|- .+.+.+|.. ..+..+. . .+|
T Consensus 99 ~~~~~~l~~~l~~~~~~~-~~lvlei~e~~~~~~~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~l~-~-----l~~ 169 (241)
T smart00052 99 PDLVPRVLELLEETGLPP-QRLELEITESVLLDDDESAVATLQRLRELGV--RIALDDFGTGYSSLSYLK-R-----LPV 169 (241)
T ss_pred chHHHHHHHHHHHcCCCH-HHEEEEEeChhhhcChHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHHHH-h-----CCC
Confidence 445566777777766552 3333333332 234455689999999993 366777643 3333332 2 467
Q ss_pred eeeeecccccccCcc-------ccchhHHHHHcCCeEEEcccC
Q 020098 220 ASNQVNYSLIYRKPE-------ENGVKAACDELGITLIAYCPI 255 (331)
Q Consensus 220 ~~~q~~~n~~~~~~~-------~~~~l~~~~~~gi~v~a~s~l 255 (331)
+++-+..+++..-.. -..++..|+..|+.+++-+.-
T Consensus 170 d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gVe 212 (241)
T smart00052 170 DLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEGVE 212 (241)
T ss_pred CeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence 777666655533211 124788999999999985443
No 200
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=39.64 E-value=2.8e+02 Score=24.86 Aligned_cols=167 Identities=16% Similarity=0.177 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHCCCCeEECCcCcCCCCCC-CCC----chHHHHHHHHHhcc---CCCCCCc--EEEEecCCCCCCCCCH
Q 020098 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASF-GAI----NSETLLGRFIKERK---QRDPEVE--VTVATKFAALPWRLGR 144 (331)
Q Consensus 75 ~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~-~~~----~sE~~iG~~l~~~~---~~~~R~~--~~i~tK~~~~~~~~~~ 144 (331)
+...+.+++|.+.|+..+=-+++......+ ... -+..-+-+.++... +.. +++ |.+.--++. -+
T Consensus 15 ~~~ee~v~~A~~~Gl~~i~~TdH~p~~~~~~~~~~~~~~~~~~~~~Y~~~i~~l~~~y-~~~i~I~~GiE~~~-----~~ 88 (253)
T TIGR01856 15 DTLEEVVQEAIQLGFEEICFTEHAPLPFEYPEETALDKMAFSSLPEYFKEINRLKKEY-ADKLKILIGLEVDY-----IP 88 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCCCcccCCCccccccchhHHHHHHHHHHHHHHHHHh-hCCCeEEEEEEecc-----cc
Confidence 456789999999999987666553210000 000 00122323222221 100 223 333333332 12
Q ss_pred HHHHHHHHHHHHhhCCCcccEEEeccCCC----C--------------ChHH----HHHHHHHHHHcC----ceeEEEee
Q 020098 145 QSVLAALKDSLFRLGLSSVELYQLHWAGI----W--------------GNEG----FIDGLGDAVEQG----LVKAVGVS 198 (331)
Q Consensus 145 ~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~----~--------------~~~~----~~~~L~~l~~~G----~i~~iGvs 198 (331)
.....++..|++.+.||+ +..+|+... . +.++ .++.+.++.+.. .+.|+.+-
T Consensus 89 -~~~~~~~~~l~~~~~D~v-igSvH~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~i~~~~~~dvlgH~Dli 166 (253)
T TIGR01856 89 -GFEDFTKDFLDEYGLDFV-IGSVHFLGGIPIDFDAEEFNEGLVSFYGNLEQAQRDYFESVYDSIQALFKPLVIGHIDLV 166 (253)
T ss_pred -chHHHHHHHHHHCCCCeE-EEEEEeecCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCcccHhHH
Confidence 233556777888888887 888897641 1 1122 222444555542 12333221
Q ss_pred ----c--------Cc--HHHHHHHHHHHHhcCCCeeeeeeccc--ccccCccccchhHHHHHcCCeEE
Q 020098 199 ----N--------YS--EKRLRNAYEKLKKRGIPLASNQVNYS--LIYRKPEENGVKAACDELGITLI 250 (331)
Q Consensus 199 ----~--------~~--~~~l~~~~~~~~~~~~~~~~~q~~~n--~~~~~~~~~~~l~~~~~~gi~v~ 250 (331)
. +. .+.++++++.+...+..+.+|-..+. .-+.-+.. .+++.|++.|+.++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~g~~lEiNt~g~r~~~~~~yP~~-~il~~~~~~g~~it 233 (253)
T TIGR01856 167 QKFGPLFTDVSSFSDEVYELLQRILKLVASQGKALEFNTSGLRKPLEEAYPSK-ELLNLAKELGIPLV 233 (253)
T ss_pred HHhCccccccccccHHHHHHHHHHHHHHHHcCCEEEEEcHhhcCCCCCCCCCH-HHHHHHHHcCCCEE
Confidence 0 00 13467777777777766665543221 11111111 48899999998744
No 201
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=39.27 E-value=3.4e+02 Score=25.71 Aligned_cols=124 Identities=21% Similarity=0.236 Sum_probs=79.0
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCC---CCCcEEEEecCCCCCCCCCHHHH
Q 020098 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRD---PEVEVTVATKFAALPWRLGRQSV 147 (331)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~---~R~~~~i~tK~~~~~~~~~~~~i 147 (331)
-.+.++...+++.|.+.|++=|=-+ |. |-.+-+-|....+.. .-.++-++|-. ..
T Consensus 42 ~Ls~eei~~~~~~~~~~Gv~kvRlT---GG---------EPllR~dl~eIi~~l~~~~~~~islTTNG----------~~ 99 (322)
T COG2896 42 LLSLEEIRRLVRAFAELGVEKVRLT---GG---------EPLLRKDLDEIIARLARLGIRDLSLTTNG----------VL 99 (322)
T ss_pred cCCHHHHHHHHHHHHHcCcceEEEe---CC---------CchhhcCHHHHHHHHhhcccceEEEecch----------hh
Confidence 3467999999999999999966532 32 333333332221110 02567777765 23
Q ss_pred HHHHHHHHHhhCCCcccEEEeccCCC---------CChHHHHHHHHHHHHcCc----eeEEEeecCcHHHHHHHHHHHHh
Q 020098 148 LAALKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGL----VKAVGVSNYSEKRLRNAYEKLKK 214 (331)
Q Consensus 148 ~~~v~~sL~~Lg~d~iDl~~lh~p~~---------~~~~~~~~~L~~l~~~G~----i~~iGvs~~~~~~l~~~~~~~~~ 214 (331)
..-...-|+.-|++.|. +.+|..++ ...+.+++.+++.++.|. |..+=+.+.+-+++..+++++..
T Consensus 100 L~~~a~~Lk~AGl~rVN-VSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~~~~ 178 (322)
T COG2896 100 LARRAADLKEAGLDRVN-VSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEFAKE 178 (322)
T ss_pred HHHHHHHHHHcCCcEEE-eecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHHHhh
Confidence 45556667777777665 34455443 125788888888888876 45666777777888888888776
Q ss_pred cCC
Q 020098 215 RGI 217 (331)
Q Consensus 215 ~~~ 217 (331)
.+.
T Consensus 179 ~~~ 181 (322)
T COG2896 179 RGA 181 (322)
T ss_pred cCC
Confidence 554
No 202
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=39.26 E-value=82 Score=29.19 Aligned_cols=105 Identities=17% Similarity=0.173 Sum_probs=61.1
Q ss_pred CceeEEEeecCcHHHHHHHHHHHHhcCCCee--e-eeecccccccCccccchhHHHHHcCCeEEEcccCccccccCCCCC
Q 020098 190 GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA--S-NQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTP 266 (331)
Q Consensus 190 G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~--~-~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~ 266 (331)
+++..+-=.+++.+.+.++.+.++....... + +.+-+--..|+. .+.+++++-++-++.-+.-..
T Consensus 155 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~---a~~~La~~vD~miVIGg~~Ss--------- 222 (281)
T PF02401_consen 155 KKVAVVSQTTQSVEKFEEIVEALKKRFPELEGPVFNTICYATQNRQE---AARELAKEVDAMIVIGGKNSS--------- 222 (281)
T ss_dssp TCEEEEE-TTS-HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHH---HHHHHHCCSSEEEEES-TT-H---------
T ss_pred CeEEEEEeecccHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHH---HHHHHHhhCCEEEEecCCCCc---------
Confidence 4777777778888888888887765432222 2 222222222222 488888888877776333222
Q ss_pred CCCCCCCCCCccchhHHhhHHHHHHHHHHHHHhcCC------CHHHHHHHhhhh------cccccchHHHHHhh
Q 020098 267 QNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSK------TSTQNSPCMSNS------LAKQILFQQLEKCL 328 (331)
Q Consensus 267 ~~~p~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~------s~~qval~~~l~------~~g~~~~~~l~enl 328 (331)
+- .+|.++|++++. ++.++-..|+.. -.|+|||+.+-+.+
T Consensus 223 ------------NT----------~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eV 274 (281)
T PF02401_consen 223 ------------NT----------RKLAEIAKEHGKPTYHIETADELDPEWLKGVKKVGITAGASTPDWIIEEV 274 (281)
T ss_dssp ------------HH----------HHHHHHHHHCTTCEEEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHH
T ss_pred ------------cH----------HHHHHHHHHhCCCEEEeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHH
Confidence 11 279999999985 688999888653 38899997766544
No 203
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=39.08 E-value=3.2e+02 Score=25.37 Aligned_cols=113 Identities=18% Similarity=0.131 Sum_probs=69.3
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEEeccCCC----CChHHHHHHHHHHHHc--Cce-eEEEeecCcHHHHHHHHHHHHh
Q 020098 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGI----WGNEGFIDGLGDAVEQ--GLV-KAVGVSNYSEKRLRNAYEKLKK 214 (331)
Q Consensus 142 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~----~~~~~~~~~L~~l~~~--G~i-~~iGvs~~~~~~l~~~~~~~~~ 214 (331)
.+.+.+++.++..++ -| +|-+++-.-.- ...+|-.+.++..++. |+| --.|++..+.+...++.+.++.
T Consensus 22 vD~~a~~~lv~~li~-~G---v~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~ 97 (299)
T COG0329 22 VDEEALRRLVEFLIA-AG---VDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEK 97 (299)
T ss_pred cCHHHHHHHHHHHHH-cC---CCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHh
Confidence 455555554444333 23 56555544322 4467777777777754 565 5689999988888888888888
Q ss_pred cCCC-eeeeeecccccccCccccchhHHHHHcCCeEEEcc-cCccc
Q 020098 215 RGIP-LASNQVNYSLIYRKPEENGVKAACDELGITLIAYC-PIAQG 258 (331)
Q Consensus 215 ~~~~-~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s-~l~~G 258 (331)
.|.. +.++-..|+-..+..-..-+...|..-++.++.|. |..-|
T Consensus 98 ~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg 143 (299)
T COG0329 98 LGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTG 143 (299)
T ss_pred cCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 8865 55555556555533221124445556699999988 44444
No 204
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=38.97 E-value=3.5e+02 Score=25.80 Aligned_cols=98 Identities=15% Similarity=0.189 Sum_probs=64.1
Q ss_pred CcccEE-EeccCCC------------CChHHHHHHHHHHHH-cCc---eeEEEee--cCcHHHHHHHHHHHHhc---CCC
Q 020098 161 SSVELY-QLHWAGI------------WGNEGFIDGLGDAVE-QGL---VKAVGVS--NYSEKRLRNAYEKLKKR---GIP 218 (331)
Q Consensus 161 d~iDl~-~lh~p~~------------~~~~~~~~~L~~l~~-~G~---i~~iGvs--~~~~~~l~~~~~~~~~~---~~~ 218 (331)
.++|+. .+|.++. ++.+++++++.+..+ .|. |+++=+. |.+.+.++++.+.++.. +..
T Consensus 203 ~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~iry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~ 282 (347)
T PRK14453 203 PQVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSWEHL 282 (347)
T ss_pred cCcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEEeECCCCCCHHHHHHHHHHHhhccccCCc
Confidence 357874 5787754 346677777666665 343 3444443 55778888888887654 224
Q ss_pred eeeeeecccccccCc--cc-------cchhHHHHHcCCeEEEcccCccc
Q 020098 219 LASNQVNYSLIYRKP--EE-------NGVKAACDELGITLIAYCPIAQG 258 (331)
Q Consensus 219 ~~~~q~~~n~~~~~~--~~-------~~~l~~~~~~gi~v~a~s~l~~G 258 (331)
..++-++||++.... .. ..+.+..+++|+.+......+.-
T Consensus 283 ~~VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~d 331 (347)
T PRK14453 283 YHVNLIPYNSTDKTPFKFQSSSAGQIKQFCSTLKSAGISVTVRTQFGSD 331 (347)
T ss_pred ceEEEecCCCCCCCCccCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCCc
Confidence 678889999875432 11 14677788889999988777653
No 205
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=38.77 E-value=3.4e+02 Score=25.49 Aligned_cols=96 Identities=14% Similarity=0.035 Sum_probs=50.9
Q ss_pred ccEEEeccCCC--CChHHHHHHHHHHHHcCceeEEEeecC----cHH-HHHHHHHHHHhcCCCeeeeeeccc-ccccCcc
Q 020098 163 VELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNY----SEK-RLRNAYEKLKKRGIPLASNQVNYS-LIYRKPE 234 (331)
Q Consensus 163 iDl~~lh~p~~--~~~~~~~~~L~~l~~~G~i~~iGvs~~----~~~-~l~~~~~~~~~~~~~~~~~q~~~n-~~~~~~~ 234 (331)
|.-+.+-.=|+ .+...+.+.++.+++.+-|..|.+.+- .+. ...++++.+...+.. ..+.+..| +-....+
T Consensus 137 I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~-v~i~l~~~h~~el~~~ 215 (321)
T TIGR03822 137 IWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKT-VYVALHANHARELTAE 215 (321)
T ss_pred ccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCc-EEEEecCCChhhcCHH
Confidence 33345554444 235678888888888887765555431 111 122333333333422 22333332 1110111
Q ss_pred ccchhHHHHHcCCeEEEcccCcccc
Q 020098 235 ENGVKAACDELGITLIAYCPIAQGA 259 (331)
Q Consensus 235 ~~~~l~~~~~~gi~v~a~s~l~~G~ 259 (331)
-...++.+++.||.+...+++..|.
T Consensus 216 ~~~ai~~L~~~Gi~v~~q~vLl~gv 240 (321)
T TIGR03822 216 ARAACARLIDAGIPMVSQSVLLRGV 240 (321)
T ss_pred HHHHHHHHHHcCCEEEEEeeEeCCC
Confidence 1146777888999999988888874
No 206
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=38.63 E-value=2.4e+02 Score=26.10 Aligned_cols=100 Identities=14% Similarity=0.164 Sum_probs=59.3
Q ss_pred HHhhCCCcccEEEecc-CCCCChHHH-----HHHHHHHHHcCceeEEEeecCcHHH----HHHHHHHHHhcCCCeeeeee
Q 020098 155 LFRLGLSSVELYQLHW-AGIWGNEGF-----IDGLGDAVEQGLVKAVGVSNYSEKR----LRNAYEKLKKRGIPLASNQV 224 (331)
Q Consensus 155 L~~Lg~d~iDl~~lh~-p~~~~~~~~-----~~~L~~l~~~G~i~~iGvs~~~~~~----l~~~~~~~~~~~~~~~~~q~ 224 (331)
++-++-.++|++.+.. .......+. -+.+-+...+--=|++|+.+..+.. .+++.+.... .-++++
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~----~gf~g~ 130 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVRE----LGFVGV 130 (293)
T ss_pred HhhhcccccceEEeeccccccchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHh----cCceEE
Confidence 7778888999999884 221112222 2467777777667889998886542 3333333332 223333
Q ss_pred cccccccCc----cc-cchhHHHHHcCCeEEEcccCccc
Q 020098 225 NYSLIYRKP----EE-NGVKAACDELGITLIAYCPIAQG 258 (331)
Q Consensus 225 ~~n~~~~~~----~~-~~~l~~~~~~gi~v~a~s~l~~G 258 (331)
..++..+.. .. ..+.++|+++|+.|+.+.....+
T Consensus 131 ~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~ 169 (293)
T COG2159 131 KLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPG 169 (293)
T ss_pred EecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 333333221 11 25999999999999986555443
No 207
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=38.52 E-value=2e+02 Score=27.33 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=7.2
Q ss_pred HHHhhCCCcccEE
Q 020098 154 SLFRLGLSSVELY 166 (331)
Q Consensus 154 sL~~Lg~d~iDl~ 166 (331)
.|.+.|+++|.+-
T Consensus 33 ~L~~aGv~~IEvg 45 (337)
T PRK08195 33 ALDAAGVPVIEVT 45 (337)
T ss_pred HHHHcCCCEEEee
Confidence 3555565555553
No 208
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=38.50 E-value=1.2e+02 Score=28.22 Aligned_cols=111 Identities=16% Similarity=0.138 Sum_probs=66.5
Q ss_pred HHHHHHcCceeEEEeecCcHHHHHHHHHHHHhcC--CC-eeeeeecccccccCccccchhHHHHHcCCeEEEcccCcccc
Q 020098 183 LGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRG--IP-LASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGA 259 (331)
Q Consensus 183 L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~--~~-~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~ 259 (331)
++.|....++..+-=.+.+.+.+.++.+.+.... .. ...+.+-+--.+|+. .+.+++++-++-++.-+.-.+
T Consensus 147 ~~~l~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~---a~~~la~~vD~miVVGg~nSs-- 221 (280)
T TIGR00216 147 LENFKVEDLLGVVSQTTLSQEDTKEIVAELKARVPQKEVPVFNTICYATQNRQD---AVKELAPEVDLMIVIGGKNSS-- 221 (280)
T ss_pred HHhCCCCCcEEEEEcCCCcHHHHHHHHHHHHHhCCCcCCCCCCCcccccHHHHH---HHHHHHhhCCEEEEECCCCCc--
Confidence 3333334555555556677888888877765422 11 112222222223332 488888888887776333222
Q ss_pred ccCCCCCCCCCCCCCCCccchhHHhhHHHHHHHHHHHHHhcCC------CHHHHHHHhhhh------cccccchHHHHHh
Q 020098 260 LTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSK------TSTQNSPCMSNS------LAKQILFQQLEKC 327 (331)
Q Consensus 260 L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~------s~~qval~~~l~------~~g~~~~~~l~en 327 (331)
+- .+|.++|+++|. ++.++-..|.-. -.|+|+|+.|-+.
T Consensus 222 -------------------NT----------~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~VGiTAGASTP~~li~e 272 (280)
T TIGR00216 222 -------------------NT----------TRLYEIAEEHGPPSYLIETAEELPEEWLKGVKVVGITAGASTPDWIIEE 272 (280)
T ss_pred -------------------hH----------HHHHHHHHHhCCCEEEECChHHCCHHHhCCCCEEEEEecCCCCHHHHHH
Confidence 11 279999999974 678888888652 3889999866544
No 209
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=38.43 E-value=51 Score=32.18 Aligned_cols=64 Identities=13% Similarity=0.108 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHcCceeEEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHHHHH--cCCeEEE
Q 020098 176 NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDE--LGITLIA 251 (331)
Q Consensus 176 ~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~--~gi~v~a 251 (331)
.-.+.+++.+..++++ ++.+.+.+.+.+.++.-.+.|+.|..+..-.|. +.++.+++ +=++++.
T Consensus 120 TVPiYqa~~~~~~k~~----~~~~mt~d~~~~~ie~qa~~GVDfmTiHcGi~~--------~~~~~~~~~~R~~giVS 185 (431)
T PRK13352 120 TVPIYQAAVEAARKYG----SVVDMTEDDLFDVIEKQAKDGVDFMTIHCGVTR--------ETLERLKKSGRIMGIVS 185 (431)
T ss_pred ChhHHHHHHHHHhcCC----ChhhCCHHHHHHHHHHHHHhCCCEEEEccchhH--------HHHHHHHhcCCccCeec
Confidence 4456777777766554 677888888888877766777778776655543 46777764 3344444
No 210
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=38.42 E-value=73 Score=28.90 Aligned_cols=100 Identities=17% Similarity=0.258 Sum_probs=49.8
Q ss_pred HHHHHHHHhhCCCcccEEEeccCCC--CChHHHHHHHHHHHHcCceeEEEeecCc----HHHHHHHHHHHHhcCCCeeee
Q 020098 149 AALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYS----EKRLRNAYEKLKKRGIPLASN 222 (331)
Q Consensus 149 ~~v~~sL~~Lg~d~iDl~~lh~p~~--~~~~~~~~~L~~l~~~G~i~~iGvs~~~----~~~l~~~~~~~~~~~~~~~~~ 222 (331)
..++..|+-.| +|||++=+-|=.. ++.+-+-+.++-+++-|.--+.|=.-|. ...++++++.|+..| |+++
T Consensus 25 ~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lG--f~~I 101 (244)
T PF02679_consen 25 RYLEDLLESAG-DYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELG--FDAI 101 (244)
T ss_dssp HHHHHHHHHHG-GG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT---SEE
T ss_pred HHHHHHHHHhh-hhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcC--CCEE
Confidence 56777788888 8999999988554 3333333334444444443344422111 234555666666544 5555
Q ss_pred eecccccccCccc-cchhHHHHHcCCeEEE
Q 020098 223 QVNYSLIYRKPEE-NGVKAACDELGITLIA 251 (331)
Q Consensus 223 q~~~n~~~~~~~~-~~~l~~~~~~gi~v~a 251 (331)
.+.-..++...++ ..+++.++++|..|++
T Consensus 102 EiSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 102 EISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp EE--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred EecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 5544444433322 2477777777777665
No 211
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=38.24 E-value=3.2e+02 Score=25.06 Aligned_cols=51 Identities=8% Similarity=0.075 Sum_probs=31.5
Q ss_pred chhhHHHHHHHHHHHHHC-CCCeEECCcCcCCCCCCCCCchHHHHHHHHHhc
Q 020098 70 DDRKMKAAKAAFDTSLDN-GITFFDTAEVYGSRASFGAINSETLLGRFIKER 120 (331)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~-Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~ 120 (331)
+.+|.+...++++..++. |++-|=..-.-|-+.+....+=++++-.+.+..
T Consensus 16 g~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~ 67 (288)
T cd00954 16 GEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAA 67 (288)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHh
Confidence 567889999999999999 999775544444332222223344454555544
No 212
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=38.21 E-value=4.1e+02 Score=26.36 Aligned_cols=108 Identities=8% Similarity=0.054 Sum_probs=58.2
Q ss_pred HHHHHHHHHhccCCCC-CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCC----cccEEEeccCCCCC-----hHHH
Q 020098 110 ETLLGRFIKERKQRDP-EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS----SVELYQLHWAGIWG-----NEGF 179 (331)
Q Consensus 110 E~~iG~~l~~~~~~~~-R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d----~iDl~~lh~p~~~~-----~~~~ 179 (331)
|+-+-++|+...+..+ .+-++|.|-+-. ..-.+.|..-+++.-+++.-+ .+.++.++.|+... .+.+
T Consensus 74 ~~kL~~aI~~~~~~~~~p~~I~V~ttC~~---eiIGDDi~~v~~~~~~~~~~e~~~~~~~vv~v~tpgF~gs~~~G~~~a 150 (457)
T TIGR02932 74 AKRIEEGVLTLARRYPNLRVIPIITTCST---ETIGDDIEGSIRKVNRALKKEFPDRKIKLVPVHTPSFKGSQVTGYAEC 150 (457)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCchH---HhhcCCHHHHHHHHHhhhhhhcCCCCCeEEEeeCCCCcCcHHHHHHHH
Confidence 8888888887654331 355777777632 111222222222222222111 36889999988732 3344
Q ss_pred HHHHHHHH-H-----cCceeEEEeecCcHHHHHHHHHHHHhcCCCeee
Q 020098 180 IDGLGDAV-E-----QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (331)
Q Consensus 180 ~~~L~~l~-~-----~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~ 221 (331)
+++|-+.. + +++|.-||-.+ ++..++++.+..+..|+.+.+
T Consensus 151 ~~ali~~~~~~~~~~~~~VNii~~~~-~~gD~~eik~lL~~~Gl~vn~ 197 (457)
T TIGR02932 151 VKSVIKTIAAKKGEPSGKLNVFPGWV-NPGDVVLLKHYFSEMGVDANI 197 (457)
T ss_pred HHHHHHHHhhccCCCCCcEEEECCCC-ChHHHHHHHHHHHHcCCCEEE
Confidence 44433222 2 36688886443 345566666667777766554
No 213
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=38.15 E-value=1e+02 Score=27.21 Aligned_cols=81 Identities=17% Similarity=0.078 Sum_probs=50.9
Q ss_pred HHhhCCCcccEEEec-cCCCCChHHHHHHHHHHHHcCc-eeEEEeec-CcHHHHHHHHHHHHhcCCCeeeeeeccccccc
Q 020098 155 LFRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGL-VKAVGVSN-YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 231 (331)
Q Consensus 155 L~~Lg~d~iDl~~lh-~p~~~~~~~~~~~L~~l~~~G~-i~~iGvs~-~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~ 231 (331)
...+|.||+-+++.- +|.....+.+- ++.+.-. +..+||.. .+.+.+.++++. ..++++|+.-.
T Consensus 18 a~~~gad~iG~If~~~SpR~Vs~~~a~----~i~~~v~~~~~VgVf~n~~~~~i~~i~~~-----~~ld~VQlHG~---- 84 (208)
T COG0135 18 AAKAGADYIGFIFVPKSPRYVSPEQAR----EIASAVPKVKVVGVFVNESIEEILEIAEE-----LGLDAVQLHGD---- 84 (208)
T ss_pred HHHcCCCEEEEEEcCCCCCcCCHHHHH----HHHHhCCCCCEEEEECCCCHHHHHHHHHh-----cCCCEEEECCC----
Confidence 346789998877765 55544444333 3333332 77999885 477888888766 68999998765
Q ss_pred CccccchhHHHHHcC-CeEE
Q 020098 232 KPEENGVKAACDELG-ITLI 250 (331)
Q Consensus 232 ~~~~~~~l~~~~~~g-i~v~ 250 (331)
+..+.++..++.. +.++
T Consensus 85 --e~~~~~~~l~~~~~~~v~ 102 (208)
T COG0135 85 --EDPEYIDQLKEELGVPVI 102 (208)
T ss_pred --CCHHHHHHHHhhcCCceE
Confidence 1113566666553 4444
No 214
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=37.61 E-value=3e+02 Score=24.59 Aligned_cols=156 Identities=18% Similarity=0.215 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHCCCCeEECCcCcCC---CCCCCCCchHHHHHHHHH---hccCCCCCC-cEEEEecCCCCCCCCCHHHHH
Q 020098 76 AAKAAFDTSLDNGITFFDTAEVYGS---RASFGAINSETLLGRFIK---ERKQRDPEV-EVTVATKFAALPWRLGRQSVL 148 (331)
Q Consensus 76 ~~~~~l~~A~~~Gvn~~Dta~~Yg~---g~~~~~~~sE~~iG~~l~---~~~~~~~R~-~~~i~tK~~~~~~~~~~~~i~ 148 (331)
...+.+.+|.+.|+..|=++++... +.. ++.+-...+ ...+. .+ ++++..-+...+.. ..
T Consensus 17 ~~~e~~~~A~~~g~~~~~iTdH~~~~~~~~~------~~~~~~~~~~~~~~~~~--~~i~i~~G~E~~~~~~~-----~~ 83 (237)
T COG1387 17 TPEEMVEAAIELGLEYIAITDHAPFLRVGLD------AELLKYFIEEIRELKKE--YDIKILIGIEVDILPDG-----SL 83 (237)
T ss_pred CHHHHHHHHHHcCCeEEEEeccccccccCCC------HHHHHHHHHHHHHHHHh--cCceEEEeEEEEecCCC-----Cc
Confidence 3455689999999999988887655 333 444444433 22211 22 22222222211111 11
Q ss_pred HHHHHHHHhhCCCcccEEEeccC--CCCChHHHHHHHHHHHHcCceeEEEeecC----------cHHHHHHHHHHHHhcC
Q 020098 149 AALKDSLFRLGLSSVELYQLHWA--GIWGNEGFIDGLGDAVEQGLVKAVGVSNY----------SEKRLRNAYEKLKKRG 216 (331)
Q Consensus 149 ~~v~~sL~~Lg~d~iDl~~lh~p--~~~~~~~~~~~L~~l~~~G~i~~iGvs~~----------~~~~l~~~~~~~~~~~ 216 (331)
.-.+..+.. .|+ =+..+|.+ .........+.+..+...+.|.-||=-+. ....+++.++.+...+
T Consensus 84 d~~~~~~~~--lD~-vi~svH~~~~~~~~~~~~~~~~~~a~~~~~v~il~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 160 (237)
T COG1387 84 DFLDEILKE--LDY-VIASVHELNFEDQDEEDYTERLIAAMSNGAVDILAHPGGRLLGRIDRGAYKEDIEELIELAEKNG 160 (237)
T ss_pred ccchhhHhh--cCE-EEEEeccCCccccCHHHHHHHHHHHHcCCCccEEecCCccccccccccccHHHHHHHHHHHHHhC
Confidence 122222333 332 35667886 33557778889999999999887774443 2345677777777777
Q ss_pred CCeeeeeecccccccCccccchhHHHHHcCCeEEE
Q 020098 217 IPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (331)
Q Consensus 217 ~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a 251 (331)
..+.++-- ..-.+... .++..|++.|+.+.-
T Consensus 161 ~aleins~-~~~~~~~~---~~~~~~~e~G~~~~i 191 (237)
T COG1387 161 KALEINSR-PGRLDPNS---EILRLARELGVKLAI 191 (237)
T ss_pred cEEeecCC-cCccCchH---HHHHHHHHhCCeEEe
Confidence 55544332 22222222 499999999887664
No 215
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=37.52 E-value=2.8e+02 Score=24.48 Aligned_cols=126 Identities=12% Similarity=0.099 Sum_probs=61.8
Q ss_pred hhhHHHHHHHHHHHHHC-----CCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHH
Q 020098 71 DRKMKAAKAAFDTSLDN-----GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQ 145 (331)
Q Consensus 71 ~~~~~~~~~~l~~A~~~-----Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~ 145 (331)
..++++..+.++.+++. |+|---.+....+ +..+...++...+ |.-+||=++... .+
T Consensus 70 ~~~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T~~---------~~~m~~vl~~l~~---~gl~FvDS~T~~----~s-- 131 (213)
T PF04748_consen 70 GMSEEEIRKRLEAALARVPGAVGVNNHMGSRFTSD---------REAMRWVLEVLKE---RGLFFVDSRTTP----RS-- 131 (213)
T ss_dssp TS-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHHC----------HHHHHHHHHHHHH---TT-EEEE-S--T----T---
T ss_pred CCCHHHHHHHHHHHHHHCCCcEEEecCCCccccCC---------HHHHHHHHHHHHH---cCCEEEeCCCCc----cc--
Confidence 45679999999999976 5553333333344 8888888877653 677888677632 11
Q ss_pred HHHHHHHHHHHhhCCCc--ccEEEeccCCCCChHH-HHHHHHHHHHcCceeEEEeec-CcHHHHHHHHHHHHhcCCC
Q 020098 146 SVLAALKDSLFRLGLSS--VELYQLHWAGIWGNEG-FIDGLGDAVEQGLVKAVGVSN-YSEKRLRNAYEKLKKRGIP 218 (331)
Q Consensus 146 ~i~~~v~~sL~~Lg~d~--iDl~~lh~p~~~~~~~-~~~~L~~l~~~G~i~~iGvs~-~~~~~l~~~~~~~~~~~~~ 218 (331)
...+.-+++|+.+ .|+|+=|..+....+. +-++....+++|..-.||=.. .+.+.+.++....+..|+.
T Consensus 132 ----~a~~~A~~~gvp~~~rdvfLD~~~~~~~I~~ql~~~~~~A~~~G~aI~Igh~~p~Tl~~L~~~~~~l~~~gi~ 204 (213)
T PF04748_consen 132 ----VAPQVAKELGVPAARRDVFLDNDQDEAAIRRQLDQAARIARKQGSAIAIGHPRPETLEALEEWLPELEAQGIE 204 (213)
T ss_dssp ----SHHHHHHHCT--EEE-SEETTST-SHHHHHHHHHHHHHHHHCCSEEEEEEE-SCCHHHHHHHHHHHHHHCTEE
T ss_pred ----HHHHHHHHcCCCEEeeceecCCCCCHHHHHHHHHHHHHhhhhcCcEEEEEcCCHHHHHHHHHHHhHHhhCCEE
Confidence 1234445555542 3443323322222222 233344445567665555332 2445555555554555543
No 216
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=37.35 E-value=1.7e+02 Score=28.67 Aligned_cols=86 Identities=8% Similarity=-0.041 Sum_probs=57.2
Q ss_pred cEEEeccCCCCC-hHHHHHHHHHHHHc------CceeEEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccCcccc
Q 020098 164 ELYQLHWAGIWG-NEGFIDGLGDAVEQ------GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEEN 236 (331)
Q Consensus 164 Dl~~lh~p~~~~-~~~~~~~L~~l~~~------G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~ 236 (331)
++ +|..|-+.. .++-++.+.+|++. ..--..+=+.++.+.+.++++. --.+++|+..+-+-.-.+-.
T Consensus 265 ~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~-----~a~d~v~iK~~k~GGIt~a~ 338 (408)
T TIGR01502 265 HL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDA-----KAGHMVQIKTPDVGGVNNIA 338 (408)
T ss_pred Ce-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHh-----CCCCEEEeCccccCCHHHHH
Confidence 44 777776422 23557777777765 3334566677788888888654 45777777776543322222
Q ss_pred chhHHHHHcCCeEEEcccC
Q 020098 237 GVKAACDELGITLIAYCPI 255 (331)
Q Consensus 237 ~~l~~~~~~gi~v~a~s~l 255 (331)
.+.++|+++||.+...+..
T Consensus 339 kia~lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 339 RAIMYCKANGMGAYVGGTC 357 (408)
T ss_pred HHHHHHHHcCCEEEEeCCC
Confidence 5899999999999997665
No 217
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=37.29 E-value=3.6e+02 Score=25.70 Aligned_cols=92 Identities=9% Similarity=0.094 Sum_probs=61.1
Q ss_pred EEEeccCCC------------CChHHHHHHHHHHHHc-Cc---eeEEEee--cCcHHHHHHHHHHHHhcCCCeeeeeecc
Q 020098 165 LYQLHWAGI------------WGNEGFIDGLGDAVEQ-GL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (331)
Q Consensus 165 l~~lh~p~~------------~~~~~~~~~L~~l~~~-G~---i~~iGvs--~~~~~~l~~~~~~~~~~~~~~~~~q~~~ 226 (331)
.+.||.|+. ++.+++++++.++.++ |+ ++++=+. |.+.+.++++.+.++.. +..++-++|
T Consensus 215 aiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l--~~kVnLIPy 292 (342)
T PRK14465 215 AISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSL--DCKINVIPL 292 (342)
T ss_pred EEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhC--CCcEEEEcc
Confidence 377898775 3468999999988754 32 2344443 45778888888877654 356777888
Q ss_pred cccccC---ccc---cchhHHHHHcCCeEEEcccCccc
Q 020098 227 SLIYRK---PEE---NGVKAACDELGITLIAYCPIAQG 258 (331)
Q Consensus 227 n~~~~~---~~~---~~~l~~~~~~gi~v~a~s~l~~G 258 (331)
|+-... +.. ....+..+++||.+......+.-
T Consensus 293 N~~~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~d 330 (342)
T PRK14465 293 NTEFFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGKD 330 (342)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcC
Confidence 874211 111 13666678889999998877753
No 218
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=37.11 E-value=3.5e+02 Score=25.20 Aligned_cols=52 Identities=10% Similarity=0.179 Sum_probs=34.2
Q ss_pred chhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhcc
Q 020098 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERK 121 (331)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~ 121 (331)
+.++.+...++++..++.|++-|=..-..|-+.+-...+=++++-.+.+...
T Consensus 24 g~iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~ 75 (309)
T cd00952 24 DTVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVA 75 (309)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhC
Confidence 4688899999999999999997655444444322222233556666666553
No 219
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=37.11 E-value=1.6e+02 Score=29.03 Aligned_cols=109 Identities=8% Similarity=0.020 Sum_probs=61.8
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCC-----hHHHHHHHH
Q 020098 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (331)
Q Consensus 110 E~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~-----~~~~~~~L~ 184 (331)
|+-+-++|+...+..+.+=++|.|=+-..--.-+-+.+-+.++.-... ..-+.++.++-|+... .+.++++|-
T Consensus 76 ~~~L~~~I~~~~~~~~P~~I~V~ttC~~eiIGDDi~~v~~~~~~e~p~--~~~~pvi~v~tpgf~g~~~~G~~~a~~al~ 153 (432)
T TIGR01285 76 DEHIEEAIDTLCQRNKPKAIGLLSTGLTETRGEDIARVVRQFREKHPQ--HKGTAVVTVNTPDFKGSLEDGYAAAVESII 153 (432)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcccccccCHHHHHHHHHhhccc--ccCCeEEEecCCCcCCchHHHHHHHHHHHH
Confidence 778888887765443356778877774311223334343333322111 1136788888887632 233444432
Q ss_pred -HHHH--------cCceeEEEeecCcHHHHHHHHHHHHhcCCCee
Q 020098 185 -DAVE--------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (331)
Q Consensus 185 -~l~~--------~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~ 220 (331)
.+.. .++|.-||-++..+..+.++.+..+..|+.+.
T Consensus 154 ~~~~~~~~~~~~~~~~VNiig~~~~~~~d~~elk~lL~~~Gl~~~ 198 (432)
T TIGR01285 154 EAWVPPAPARAQRNRRVNLLVGSLLTPGDIEELRRMVEAFGLKPI 198 (432)
T ss_pred HHHcccccccCCCCCeEEEEcCCCCCccCHHHHHHHHHHcCCceE
Confidence 2221 45688888777766666777776777777653
No 220
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=37.02 E-value=1.9e+02 Score=23.94 Aligned_cols=55 Identities=7% Similarity=0.117 Sum_probs=33.8
Q ss_pred chhHHHHHcCCeEEEcccCccccccCCCCCCCCCCCCCCCccchhHHhhHHHHHHHHHHHHHhcCCCHHH
Q 020098 237 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQ 306 (331)
Q Consensus 237 ~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~q 306 (331)
.+++..+..+..++..++.-... . ..+.....+...+..+.++++|+++++....
T Consensus 96 ~~i~~i~~~~~~vil~~~~~~~~----~-----------~~~~~~~~~~~~~~n~~l~~~a~~~~v~~vd 150 (185)
T cd01832 96 EAVRRLRAAGARVVVFTIPDPAV----L-----------EPFRRRVRARLAAYNAVIRAVAARYGAVHVD 150 (185)
T ss_pred HHHHHHHhCCCEEEEecCCCccc----c-----------chhHHHHHHHHHHHHHHHHHHHHHcCCEEEe
Confidence 47778887788888776654300 0 1122223344566667899999999875443
No 221
>PRK11059 regulatory protein CsrD; Provisional
Probab=36.84 E-value=2.2e+02 Score=29.40 Aligned_cols=106 Identities=13% Similarity=0.044 Sum_probs=67.4
Q ss_pred CCHHHHHHHHHHHHHhh-CCCcccEEEeccCCC---CChHHHHHHHHHHHHcCceeEEEeecCc--HHHHHHHHHHHHhc
Q 020098 142 LGRQSVLAALKDSLFRL-GLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNYS--EKRLRNAYEKLKKR 215 (331)
Q Consensus 142 ~~~~~i~~~v~~sL~~L-g~d~iDl~~lh~p~~---~~~~~~~~~L~~l~~~G~i~~iGvs~~~--~~~l~~~~~~~~~~ 215 (331)
.....+...+...|... +.. .+-+.+.-++. ...+.+...++.|++.|- .|++.+|. ...+..+. .
T Consensus 495 l~~~~f~~~l~~~l~~~~~~~-~~~l~~Ei~E~~~~~~~~~~~~~l~~L~~~G~--~iaiddfG~g~~s~~~L~-~---- 566 (640)
T PRK11059 495 LLSRAFQRWLRDTLLQCPRSQ-RKRLIFELAEADVCQHISRLRPVLRMLRGLGC--RLAVDQAGLTVVSTSYIK-E---- 566 (640)
T ss_pred hCChhHHHHHHHHHHhcCCCC-cceEEEEEechhhhcCHHHHHHHHHHHHHCCC--EEEEECCCCCcccHHHHH-h----
Confidence 33445667777777776 543 46667666664 356788999999999995 35665553 12232221 1
Q ss_pred CCCeeeeeecccccccC---ccc----cchhHHHHHcCCeEEEcccCc
Q 020098 216 GIPLASNQVNYSLIYRK---PEE----NGVKAACDELGITLIAYCPIA 256 (331)
Q Consensus 216 ~~~~~~~q~~~n~~~~~---~~~----~~~l~~~~~~gi~v~a~s~l~ 256 (331)
.+++++-+.-+++..- .+. ..++..|+..|+.|+|-+.-.
T Consensus 567 -l~~d~iKid~s~v~~i~~~~~~~~~v~sli~~a~~~~i~viAegVEt 613 (640)
T PRK11059 567 -LNVELIKLHPSLVRNIHKRTENQLFVRSLVGACAGTETQVFATGVES 613 (640)
T ss_pred -CCCCEEEECHHHHhhhhcCchhHHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 4788777766654331 111 258999999999999955433
No 222
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=36.60 E-value=4.3e+02 Score=26.08 Aligned_cols=105 Identities=22% Similarity=0.180 Sum_probs=56.1
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCC-----hHHHHHHHH
Q 020098 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (331)
Q Consensus 110 E~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~-----~~~~~~~L~ 184 (331)
|+-+-++|....++.+.+-++|.|=+-. ..-.+.+..-+++.-++.+ +.++.++.|.... .+.++++|-
T Consensus 106 ~~kL~~~I~e~~~~~~P~~I~V~ttC~~---~lIGdDi~~v~~e~~~~~~---~~vi~v~t~gf~g~~~~G~~~a~~al~ 179 (456)
T TIGR01283 106 EKKLFHAIREIVERYHPPAVFVYSTCVP---GLIGDDLEAVCKAAAEKTG---IPVIPVDSEGFYGSKNLGNKLACDALL 179 (456)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCChH---HHhcCCHHHHHHHHHHHhC---CCEEEEECCCCccchhHHHHHHHHHHH
Confidence 8888888877665444677788877732 1112222222222222333 5788888877522 233444444
Q ss_pred HHHH-------------cCceeEEEeecCcHHHHHHHHHHHHhcCCCeee
Q 020098 185 DAVE-------------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (331)
Q Consensus 185 ~l~~-------------~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~ 221 (331)
+... .+.|.-||-.+.. ..+.++.+.++..|+.+.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~-~d~~el~~lL~~~Gl~v~~ 228 (456)
T TIGR01283 180 KHVIGTREPEPIPVGTTVHDINLIGEFNVA-GEFWHVKPLLEKLGIRVLA 228 (456)
T ss_pred HHHhccCCcccccccCCCCcEEEEcCCCCc-ccHHHHHHHHHHcCCeEEE
Confidence 3321 3578888865532 2333444445666665543
No 223
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=36.59 E-value=3.4e+02 Score=24.88 Aligned_cols=109 Identities=13% Similarity=0.034 Sum_probs=65.8
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCC----CChHHHHHHHHHHHH--cCce-eEEEeecCcHHHHHHHHHHH
Q 020098 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI----WGNEGFIDGLGDAVE--QGLV-KAVGVSNYSEKRLRNAYEKL 212 (331)
Q Consensus 140 ~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~----~~~~~~~~~L~~l~~--~G~i-~~iGvs~~~~~~l~~~~~~~ 212 (331)
...+.+.+++.++..++.+|+ |-+++-...- ...+|-.+.++..++ .|++ -.+|++..+.+...++.+.+
T Consensus 16 g~iD~~~~~~~i~~l~~~~Gv---~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a 92 (288)
T cd00954 16 GEINEDVLRAIVDYLIEKQGV---DGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHA 92 (288)
T ss_pred CCCCHHHHHHHHHHHHhcCCC---CEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHH
Confidence 356778888888888876675 4455543221 345555555554444 3554 46789888877777777778
Q ss_pred HhcCCCeeeeeecccccccCccccchhHH----HHHc-CCeEEEccc
Q 020098 213 KKRGIPLASNQVNYSLIYRKPEENGVKAA----CDEL-GITLIAYCP 254 (331)
Q Consensus 213 ~~~~~~~~~~q~~~n~~~~~~~~~~~l~~----~~~~-gi~v~a~s~ 254 (331)
+..|..-.++..+|..- ...+ +++++ |+.- ++.++.|..
T Consensus 93 ~~~Gad~v~~~~P~y~~-~~~~--~i~~~~~~v~~a~~~lpi~iYn~ 136 (288)
T cd00954 93 EELGYDAISAITPFYYK-FSFE--EIKDYYREIIAAAASLPMIIYHI 136 (288)
T ss_pred HHcCCCEEEEeCCCCCC-CCHH--HHHHHHHHHHHhcCCCCEEEEeC
Confidence 88887655554554322 1112 35544 4555 788888854
No 224
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=36.51 E-value=3.6e+02 Score=25.74 Aligned_cols=137 Identities=18% Similarity=0.177 Sum_probs=82.0
Q ss_pred chhhHHHHHHHHHHHHHCC-CCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHH
Q 020098 70 DDRKMKAAKAAFDTSLDNG-ITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL 148 (331)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~G-vn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~ 148 (331)
...+.++..+.=+.|-+.| .+|...+..+++++. -..+-+.++..... -.+-+.--+| ..+.+..
T Consensus 82 ~l~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~------~~~i~~~v~~Vk~~---~~le~c~slG----~l~~eq~- 147 (335)
T COG0502 82 KLMEVEEILEAAKKAKAAGATRFCMGAAGRGPGRD------MEEVVEAIKAVKEE---LGLEVCASLG----MLTEEQA- 147 (335)
T ss_pred hcCCHHHHHHHHHHHHHcCCceEEEEEeccCCCcc------HHHHHHHHHHHHHh---cCcHHhhccC----CCCHHHH-
Confidence 3455677777777788999 889999888875444 56666666655311 1232333332 2444433
Q ss_pred HHHHHHHHhhCCCcccEEEeccCCC-----------CChHHHHHHHHHHHHcCce----eEEEeecCcHHHHHHHHHHHH
Q 020098 149 AALKDSLFRLGLSSVELYQLHWAGI-----------WGNEGFIDGLGDAVEQGLV----KAVGVSNYSEKRLRNAYEKLK 213 (331)
Q Consensus 149 ~~v~~sL~~Lg~d~iDl~~lh~p~~-----------~~~~~~~~~L~~l~~~G~i----~~iGvs~~~~~~l~~~~~~~~ 213 (331)
+-|+.-|+|+. -|+-+. ...++-++.++.+++.|.= .-+|+..-..+.++.+...++
T Consensus 148 ----~~L~~aGvd~y----nhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~ 219 (335)
T COG0502 148 ----EKLADAGVDRY----NHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELAN 219 (335)
T ss_pred ----HHHHHcChhhe----ecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHh
Confidence 34666777763 354332 2368889999999999862 235665555666777766544
Q ss_pred hcCCCeeeeeecccccccC
Q 020098 214 KRGIPLASNQVNYSLIYRK 232 (331)
Q Consensus 214 ~~~~~~~~~q~~~n~~~~~ 232 (331)
... .-.+++|.+.+.
T Consensus 220 ---l~~-pdsVPIn~l~P~ 234 (335)
T COG0502 220 ---LPT-PDSVPINFLNPI 234 (335)
T ss_pred ---CCC-CCeeeeeeecCC
Confidence 221 334555555543
No 225
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=36.51 E-value=2.3e+02 Score=27.51 Aligned_cols=80 Identities=14% Similarity=0.199 Sum_probs=40.1
Q ss_pred eeeeecccccccCccc---cchhHHHHHcCCeEEEcccCccccccCCCCCCCCCCCCCCCccchhHHhhHHHHHHHHHHH
Q 020098 220 ASNQVNYSLIYRKPEE---NGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKEL 296 (331)
Q Consensus 220 ~~~q~~~n~~~~~~~~---~~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~l 296 (331)
++-...||+.+....+ .++.++|+++||.+-.|-.. .......|....++.... .-.+.+.+-.......+++|
T Consensus 112 ~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~-~DW~~p~y~~~~~~~~~~--~~~~~~~~y~~~~~~Ql~EL 188 (384)
T smart00812 112 DSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL-FDWFNPLYAGPTSSDEDP--DNWPRFQEFVDDWLPQLREL 188 (384)
T ss_pred CCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH-HHhCCCcccccccccccc--ccchhHHHHHHHHHHHHHHH
Confidence 3334466666654322 25899999999999886543 111111121100011000 00112222232235689999
Q ss_pred HHhcCC
Q 020098 297 GENYSK 302 (331)
Q Consensus 297 a~~~g~ 302 (331)
..+||-
T Consensus 189 it~Ygp 194 (384)
T smart00812 189 VTRYKP 194 (384)
T ss_pred HhcCCC
Confidence 999974
No 226
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=36.45 E-value=1.5e+02 Score=23.97 Aligned_cols=61 Identities=11% Similarity=0.217 Sum_probs=42.3
Q ss_pred CCcEEEEec-CCCCCCCCCHHHHHHHHHHHHHhhC--CCcccEEEeccCCC--CChHHHHHHHHHHHHc
Q 020098 126 EVEVTVATK-FAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (331)
Q Consensus 126 R~~~~i~tK-~~~~~~~~~~~~i~~~v~~sL~~Lg--~d~iDl~~lh~p~~--~~~~~~~~~L~~l~~~ 189 (331)
|=.+.|+-| ++ ....+..+++.+.++.+... ..-.|++++..+.. .+..++.+.|..|.+.
T Consensus 47 RiG~~VsKK~~g---~AV~RNRiKR~lRE~fR~~~~~l~g~DiVviaR~~~~~~~~~~l~~~l~~ll~k 112 (130)
T PRK00396 47 RLGLVIGKKSVK---LAVDRNRLKRLIRESFRLNQHSLAGWDIVVVARKGLGELENPELHQQFGKLWKR 112 (130)
T ss_pred cEEEEEecccCc---cHhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 566777777 54 35678888888888887653 34579999988765 4556666666665543
No 227
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=36.38 E-value=2.3e+02 Score=22.88 Aligned_cols=107 Identities=14% Similarity=0.109 Sum_probs=64.3
Q ss_pred HHHHHHHHHHH-HCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 020098 75 KAAKAAFDTSL-DNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (331)
Q Consensus 75 ~~~~~~l~~A~-~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~ 153 (331)
+...+++..++ +.|+..+|+.-.-.. |+++-.+.+... +=+.|++-. -+.....+.+-+
T Consensus 16 d~g~~iv~~~l~~~GfeVi~lg~~~s~---------e~~v~aa~e~~a-----dii~iSsl~------~~~~~~~~~~~~ 75 (132)
T TIGR00640 16 DRGAKVIATAYADLGFDVDVGPLFQTP---------EEIARQAVEADV-----HVVGVSSLA------GGHLTLVPALRK 75 (132)
T ss_pred HHHHHHHHHHHHhCCcEEEECCCCCCH---------HHHHHHHHHcCC-----CEEEEcCch------hhhHHHHHHHHH
Confidence 55667788877 569999998655444 877777776643 334444443 223333455555
Q ss_pred HHHhhCCCcccE-EEeccCCCCChHHHHHHHHHHHHcCceeEEEeecCcHHHHHHHH
Q 020098 154 SLFRLGLSSVEL-YQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAY 209 (331)
Q Consensus 154 sL~~Lg~d~iDl-~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~ 209 (331)
.|+..|.+ |+ +++-.-- +.+ ..++|++.|.-+.|+..+.-.+.+..+.
T Consensus 76 ~L~~~g~~--~i~vivGG~~--~~~----~~~~l~~~Gvd~~~~~gt~~~~i~~~l~ 124 (132)
T TIGR00640 76 ELDKLGRP--DILVVVGGVI--PPQ----DFDELKEMGVAEIFGPGTPIPESAIFLL 124 (132)
T ss_pred HHHhcCCC--CCEEEEeCCC--ChH----hHHHHHHCCCCEEECCCCCHHHHHHHHH
Confidence 67776764 44 4444211 111 2456899999999998875444444443
No 228
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=36.07 E-value=3.8e+02 Score=25.30 Aligned_cols=130 Identities=17% Similarity=0.088 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHH-CCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 020098 74 MKAAKAAFDTSLD-NGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (331)
Q Consensus 74 ~~~~~~~l~~A~~-~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~ 152 (331)
.++..++++..-+ .|++-+--+. |.... .....+.+.++...+...-..+-+.|+.- ..-+..+...+-
T Consensus 144 ~~~~~~~i~~i~~~~~i~eV~lsG--GDPLl----~~d~~L~~ll~~L~~i~~~~~IRi~tr~~----~~~P~rit~el~ 213 (331)
T TIGR00238 144 KKKWQKALDYIAEHPEIIEILISG--GDPLM----AKDHELEWLLKRLEEIPHLVRLRIGTRLP----VVIPQRITDELC 213 (331)
T ss_pred HHHHHHHHHHHHhCCCcCEEEEEC--Ccccc----CCHHHHHHHHHHHHhcCCccEEEeecCCC----ccCchhcCHHHH
Confidence 4666777776654 3777554332 22110 11333444444332110124566777762 122444555555
Q ss_pred HHHHhhCCCcccEEEeccCC-CCChHHHHHHHHHHHHcCceeEEEee-------cCcHHHHHHHHHHHHhcCC
Q 020098 153 DSLFRLGLSSVELYQLHWAG-IWGNEGFIDGLGDAVEQGLVKAVGVS-------NYSEKRLRNAYEKLKKRGI 217 (331)
Q Consensus 153 ~sL~~Lg~d~iDl~~lh~p~-~~~~~~~~~~L~~l~~~G~i~~iGvs-------~~~~~~l~~~~~~~~~~~~ 217 (331)
+.|++.|...+. ..|.-. ..-.+++.++++.|++.|.. +++- |.+.+.+.++.+.+...|+
T Consensus 214 ~~L~~~~~~~~~--vsh~nh~~Ei~~~~~~ai~~L~~aGi~--v~~qtvLl~gvnD~~~~l~~L~~~l~~~gV 282 (331)
T TIGR00238 214 ELLASFELQLML--VTHINHCNEITEEFAEAMKKLRTVNVT--LLNQSVLLRGVNDRAQILAKLSIALFKVGI 282 (331)
T ss_pred HHHHhcCCcEEE--EccCCChHhCCHHHHHHHHHHHHcCCE--EEeecceECCcCCCHHHHHHHHHHHhhcCe
Confidence 667766654332 223321 12357788888888888853 2221 2345555555554444443
No 229
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=35.94 E-value=3.9e+02 Score=25.36 Aligned_cols=152 Identities=13% Similarity=0.036 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 020098 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (331)
Q Consensus 74 ~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~ 153 (331)
.++..+-...+++.|++.|=.-- |... +.+.-.=+++++.- -+++-|..=.. ..++.+...+ +-+
T Consensus 139 ~e~~~~~a~~~~~~Gf~~~Kikv--g~~~-----~~d~~~v~~vRe~~----G~~~~l~vDaN---~~~~~~~A~~-~~~ 203 (352)
T cd03328 139 DDRLREQLSGWVAQGIPRVKMKI--GRDP-----RRDPDRVAAARRAI----GPDAELFVDAN---GAYSRKQALA-LAR 203 (352)
T ss_pred HHHHHHHHHHHHHCCCCEEEeec--CCCH-----HHHHHHHHHHHHHc----CCCCeEEEECC---CCCCHHHHHH-HHH
Confidence 45555666777789999765321 2110 00222233344332 12333332221 2244443222 222
Q ss_pred HHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHc--Cce-eEEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccc
Q 020098 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLV-KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (331)
Q Consensus 154 sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~--G~i-~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~ 230 (331)
.|+. +++.++..|-+ .+-++.+.+|+++ -.| -..|=+.++.+.+.++++. -..+++|+...-.-
T Consensus 204 ~l~~-----~~~~~~EeP~~---~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~-----~a~div~~d~~~~G 270 (352)
T cd03328 204 AFAD-----EGVTWFEEPVS---SDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEA-----HAVDVLQADVTRCG 270 (352)
T ss_pred HHHH-----hCcchhhCCCC---hhhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHc-----CCCCEEecCccccC
Confidence 3333 35555555532 2336777888877 333 3567777888888888664 35788887776432
Q ss_pred cCccccchhHHHHHcCCeEEEcc
Q 020098 231 RKPEENGVKAACDELGITLIAYC 253 (331)
Q Consensus 231 ~~~~~~~~l~~~~~~gi~v~a~s 253 (331)
.-.+-..+.+.|+.+|+.+..++
T Consensus 271 Git~~~~ia~~A~a~gi~~~~h~ 293 (352)
T cd03328 271 GVTGFLQAAALAAAHHVDLSAHC 293 (352)
T ss_pred CHHHHHHHHHHHHHcCCeeccCc
Confidence 21122258999999999999874
No 230
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=35.34 E-value=1.5e+02 Score=24.63 Aligned_cols=59 Identities=19% Similarity=0.257 Sum_probs=40.0
Q ss_pred eeEEEeecCc--HHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHHHHHcCCeEEEcccCccccc
Q 020098 192 VKAVGVSNYS--EKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGAL 260 (331)
Q Consensus 192 i~~iGvs~~~--~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~L 260 (331)
+..+|+.+|+ ...+.++++- ..|.++ |..+.+.++ +.+..+.++++.++..|.+.++.+
T Consensus 17 vak~GlDgHd~gakvia~~l~d-----~GfeVi---~~g~~~tp~--e~v~aA~~~dv~vIgvSsl~g~h~ 77 (143)
T COG2185 17 VAKLGLDGHDRGAKVIARALAD-----AGFEVI---NLGLFQTPE--EAVRAAVEEDVDVIGVSSLDGGHL 77 (143)
T ss_pred EeccCccccccchHHHHHHHHh-----CCceEE---ecCCcCCHH--HHHHHHHhcCCCEEEEEeccchHH
Confidence 4567888875 4556666433 345553 333444455 589999999999999999998754
No 231
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=35.23 E-value=3.9e+02 Score=25.14 Aligned_cols=96 Identities=14% Similarity=0.040 Sum_probs=53.3
Q ss_pred ccEEEeccCCCCC--hHHHHHHHHHHHHcCceeEEEeec----CcHHHH-HHHHHHHHhcCCCeeeeeeccc-ccccCcc
Q 020098 163 VELYQLHWAGIWG--NEGFIDGLGDAVEQGLVKAVGVSN----YSEKRL-RNAYEKLKKRGIPLASNQVNYS-LIYRKPE 234 (331)
Q Consensus 163 iDl~~lh~p~~~~--~~~~~~~L~~l~~~G~i~~iGvs~----~~~~~l-~~~~~~~~~~~~~~~~~q~~~n-~~~~~~~ 234 (331)
+.-+.+-.=|+.. ...+.+.++.+..-..++.+|+.+ ..+..+ +++++..+..+.. .++++.+| +-+-..+
T Consensus 143 i~~VvltGGEPL~~~d~~L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~-~~~~~h~dh~~Ei~d~ 221 (321)
T TIGR03821 143 INEVILSGGDPLMAKDHRLDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQ-TVLVVHINHANEIDAE 221 (321)
T ss_pred CCEEEEeCcccccCCchHHHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcCCc-EEEEeeCCChHhCcHH
Confidence 3345555444422 233667777777777777777764 333333 3444444443322 22233443 2121122
Q ss_pred ccchhHHHHHcCCeEEEcccCcccc
Q 020098 235 ENGVKAACDELGITLIAYCPIAQGA 259 (331)
Q Consensus 235 ~~~~l~~~~~~gi~v~a~s~l~~G~ 259 (331)
..+.++.+++.||.+...+++..|+
T Consensus 222 ~~~ai~~L~~~Gi~v~~qtvllkgi 246 (321)
T TIGR03821 222 VADALAKLRNAGITLLNQSVLLRGV 246 (321)
T ss_pred HHHHHHHHHHcCCEEEecceeeCCC
Confidence 2257888899999999999998874
No 232
>PRK01732 rnpA ribonuclease P; Reviewed
Probab=34.91 E-value=1.8e+02 Score=22.96 Aligned_cols=61 Identities=16% Similarity=0.204 Sum_probs=42.8
Q ss_pred CCcEEEEec-CCCCCCCCCHHHHHHHHHHHHHhhC--CCcccEEEeccCCC--CChHHHHHHHHHHHHc
Q 020098 126 EVEVTVATK-FAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (331)
Q Consensus 126 R~~~~i~tK-~~~~~~~~~~~~i~~~v~~sL~~Lg--~d~iDl~~lh~p~~--~~~~~~~~~L~~l~~~ 189 (331)
|-.+.|+-| ++ ....+..+++.+.++.+.+. ....|++++-.+.. .+..++.+.|..+.+.
T Consensus 46 R~G~~VsKK~~g---~AV~RNriKR~lRe~~R~~~~~l~~~diVviar~~~~~~~~~~l~~~l~~ll~k 111 (114)
T PRK01732 46 RLGLTVAKKNVK---RAHERNRIKRLTRESFRLHQHELPAMDFVVIAKKGVADLDNRELFELLEKLWRR 111 (114)
T ss_pred EEEEEEEcccCc---chhHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 566777777 54 24667888888888887653 23569999987765 4567787777777653
No 233
>PRK08419 lipid A biosynthesis lauroyl acyltransferase; Reviewed
Probab=34.90 E-value=3.6e+02 Score=24.72 Aligned_cols=64 Identities=13% Similarity=0.149 Sum_probs=41.8
Q ss_pred HHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhh
Q 020098 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRL 158 (331)
Q Consensus 79 ~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~L 158 (331)
+.+..|++.|--.|=.+.|+|| =+.++.++.... ..+.+..|- .....+.+-+.+...+.
T Consensus 103 e~l~~a~~~g~gvI~~t~H~Gn---------wE~~~~~l~~~~-----~~~~~v~~~------~~n~~~~~~~~~~R~~~ 162 (298)
T PRK08419 103 ENLLDALKKKRPIIVTTAHYGY---------WELFSLALAAYY-----GAVSIVGRL------LKSAPINEMISKRREQF 162 (298)
T ss_pred HHHHHHHHcCCCEEEEeeCccH---------HHHHHHHHHhcC-----CCeEEEEeC------CCChHHHHHHHHHHHHc
Confidence 4577777777777777788887 777777776543 256655553 22355666666777777
Q ss_pred CCCc
Q 020098 159 GLSS 162 (331)
Q Consensus 159 g~d~ 162 (331)
|...
T Consensus 163 g~~~ 166 (298)
T PRK08419 163 GIEL 166 (298)
T ss_pred CCee
Confidence 7653
No 234
>PLN02417 dihydrodipicolinate synthase
Probab=34.50 E-value=3.6e+02 Score=24.63 Aligned_cols=108 Identities=13% Similarity=0.136 Sum_probs=64.7
Q ss_pred chhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 020098 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (331)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~ 149 (331)
+.+|.+...+.++..++.|++-|=..-..|-+.+-...+=++++-.+.+... +++-|..-++ ..+.+...+
T Consensus 17 g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~-----~~~pvi~gv~----~~~t~~~i~ 87 (280)
T PLN02417 17 GRFDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFG-----GKIKVIGNTG----SNSTREAIH 87 (280)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhC-----CCCcEEEECC----CccHHHHHH
Confidence 5688899999999999999997755444444322122223444444455432 4444554443 233443333
Q ss_pred HHHHHHHhhCCCcccEEEeccCCC--CChHHHHHHHHHHHHcC
Q 020098 150 ALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQG 190 (331)
Q Consensus 150 ~v~~sL~~Lg~d~iDl~~lh~p~~--~~~~~~~~~L~~l~~~G 190 (331)
..+.. +++| +|.+++.-|.. ...+++.+.++++.+..
T Consensus 88 ~a~~a-~~~G---adav~~~~P~y~~~~~~~i~~~f~~va~~~ 126 (280)
T PLN02417 88 ATEQG-FAVG---MHAALHINPYYGKTSQEGLIKHFETVLDMG 126 (280)
T ss_pred HHHHH-HHcC---CCEEEEcCCccCCCCHHHHHHHHHHHHhhC
Confidence 33333 5677 46677777655 34678888888887765
No 235
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=34.44 E-value=3.6e+02 Score=24.61 Aligned_cols=206 Identities=11% Similarity=0.116 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHCCCCeEE----CCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHH
Q 020098 70 DDRKMKAAKAAFDTSLDNGITFFD----TAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQ 145 (331)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gvn~~D----ta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~ 145 (331)
+..+.+...++++...+.|+++++ .++-+.+| ..+--...+... ...+.+
T Consensus 19 G~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADG--------pvIq~A~~rAL~------------------~G~~~~ 72 (259)
T PF00290_consen 19 GYPDLETTLEILKALEEAGADIIEIGIPFSDPVADG--------PVIQKASQRALK------------------NGFTLE 72 (259)
T ss_dssp TSSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSS--------HHHHHHHHHHHH------------------TT--HH
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCC--------HHHHHHHHHHHH------------------CCCCHH
Q ss_pred HHHHHHHHHH-HhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecCcHHHHHHHHHHHHhcCCCeeeeee
Q 020098 146 SVLAALKDSL-FRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQV 224 (331)
Q Consensus 146 ~i~~~v~~sL-~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~ 224 (331)
.+.+.+++.. +... +.++++-+.+..-..++=+.++++++.| |.-+=+-+...++-+++.+.++..|+.+...-.
T Consensus 73 ~~~~~~~~ir~~~~~---~pivlm~Y~N~i~~~G~e~F~~~~~~aG-vdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~ 148 (259)
T PF00290_consen 73 KIFELVKEIRKKEPD---IPIVLMTYYNPIFQYGIERFFKEAKEAG-VDGLIIPDLPPEESEELREAAKKHGLDLIPLVA 148 (259)
T ss_dssp HHHHHHHHHHHHCTS---SEEEEEE-HHHHHHH-HHHHHHHHHHHT-EEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEE
T ss_pred HHHHHHHHHhccCCC---CCEEEEeeccHHhccchHHHHHHHHHcC-CCEEEEcCCChHHHHHHHHHHHHcCCeEEEEEC
Q ss_pred cccccccCccccchhHHHHHcCCeEEEcccCccccccCCCCCCCCCCCCCCCccchhHHhhHHHHHHHHHHHHHhc----
Q 020098 225 NYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENY---- 300 (331)
Q Consensus 225 ~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~la~~~---- 300 (331)
+-+.-+|-.. +.+.+... |-++++....| ..........+.++.+++..+..
T Consensus 149 p~t~~~Ri~~---i~~~a~gF-iY~vs~~GvTG--------------------~~~~~~~~l~~~i~~ik~~~~~Pv~vG 204 (259)
T PF00290_consen 149 PTTPEERIKK---IAKQASGF-IYLVSRMGVTG--------------------SRTELPDELKEFIKRIKKHTDLPVAVG 204 (259)
T ss_dssp TTS-HHHHHH---HHHH-SSE-EEEESSSSSSS--------------------TTSSCHHHHHHHHHHHHHTTSS-EEEE
T ss_pred CCCCHHHHHH---HHHhCCcE-EEeeccCCCCC--------------------CcccchHHHHHHHHHHHhhcCcceEEe
Q ss_pred -CCCHHHHHHHhhh----hcccccchHHHHHhhc
Q 020098 301 -SKTSTQNSPCMSN----SLAKQILFQQLEKCLT 329 (331)
Q Consensus 301 -g~s~~qval~~~l----~~~g~~~~~~l~enl~ 329 (331)
|++-.+-+-.... .++|+.-+++++++.+
T Consensus 205 FGI~~~e~~~~~~~~aDGvIVGSa~v~~i~~~~~ 238 (259)
T PF00290_consen 205 FGISTPEQAKKLAAGADGVIVGSAFVKIIEENGD 238 (259)
T ss_dssp SSS-SHHHHHHHHTTSSEEEESHHHHHHHHHTCC
T ss_pred cCCCCHHHHHHHHccCCEEEECHHHHHHHHHccc
No 236
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=34.35 E-value=1.7e+02 Score=22.93 Aligned_cols=61 Identities=11% Similarity=0.140 Sum_probs=45.3
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCC---CcccEEEeccCCC--CChHHHHHHHHHHHHc
Q 020098 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL---SSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (331)
Q Consensus 126 R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~---d~iDl~~lh~p~~--~~~~~~~~~L~~l~~~ 189 (331)
|=.+.|+-|+|. ...+..+++.+.+.++.... ...|++++-.+.. .+..++-+.|..|.+.
T Consensus 39 R~GisVsKKvgk---AV~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~~~~~~l~~~l~~ll~k 104 (114)
T PRK00499 39 RVGISVSKKVGN---AVVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAELDYKEIKKSLIHVLKL 104 (114)
T ss_pred EEEEEEecccCc---hhhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 678888888864 56788899988888887632 3569999988765 4566777777776654
No 237
>PLN02591 tryptophan synthase
Probab=34.28 E-value=3.6e+02 Score=24.48 Aligned_cols=34 Identities=12% Similarity=0.132 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCC
Q 020098 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFG 105 (331)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~ 105 (331)
.+.+...++++...+.|++.++-.=-|.+..+||
T Consensus 13 P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDG 46 (250)
T PLN02591 13 PDLDTTAEALRLLDACGADVIELGVPYSDPLADG 46 (250)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccC
Confidence 4568889999999999999999887777766654
No 238
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=34.26 E-value=2.9e+02 Score=23.58 Aligned_cols=99 Identities=8% Similarity=-0.120 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeE-EEeecCcHHHHHHHHHHHHhcCCCee
Q 020098 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKA-VGVSNYSEKRLRNAYEKLKKRGIPLA 220 (331)
Q Consensus 142 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~-iGvs~~~~~~l~~~~~~~~~~~~~~~ 220 (331)
.++..+.+.++. +.+.|.|+|.+-....+........++.++++++...+.- +.+-......+.+. +.. ...+
T Consensus 8 ~~~~~~~~~~~~-~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~---~~~--~gad 81 (210)
T TIGR01163 8 ADFARLGEEVKA-VEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIED---FAE--AGAD 81 (210)
T ss_pred CCHHHHHHHHHH-HHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHH---HHH--cCCC
Confidence 344455555443 4466777777754443332122234555555655432221 55555554433222 222 3455
Q ss_pred eeeecccccccCccccchhHHHHHcCCeE
Q 020098 221 SNQVNYSLIYRKPEENGVKAACDELGITL 249 (331)
Q Consensus 221 ~~q~~~n~~~~~~~~~~~l~~~~~~gi~v 249 (331)
.+|++...-+.. ...++.+++.|+.+
T Consensus 82 gv~vh~~~~~~~---~~~~~~~~~~g~~~ 107 (210)
T TIGR01163 82 IITVHPEASEHI---HRLLQLIKDLGAKA 107 (210)
T ss_pred EEEEccCCchhH---HHHHHHHHHcCCcE
Confidence 555544322111 13566777776654
No 239
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=34.22 E-value=2e+02 Score=26.03 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=15.0
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEEe
Q 020098 142 LGRQSVLAALKDSLFRLGLSSVELYQL 168 (331)
Q Consensus 142 ~~~~~i~~~v~~sL~~Lg~d~iDl~~l 168 (331)
++.+... .+-+.|.++|+++|.+-+.
T Consensus 19 ~~~~~k~-~i~~~L~~~Gv~~iEvg~~ 44 (263)
T cd07943 19 FTLEQVR-AIARALDAAGVPLIEVGHG 44 (263)
T ss_pred cCHHHHH-HHHHHHHHcCCCEEEeecC
Confidence 4444433 3444477777777777644
No 240
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=34.22 E-value=4.2e+02 Score=25.27 Aligned_cols=29 Identities=24% Similarity=0.236 Sum_probs=17.0
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcccEEEec
Q 020098 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLH 169 (331)
Q Consensus 140 ~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh 169 (331)
...+.+.+++.++..+ +++.+++.++.+.
T Consensus 170 Pgqt~~~~~~tl~~~~-~l~~~~i~~y~l~ 198 (375)
T PRK05628 170 PGESDDDWRASLDAAL-EAGVDHVSAYALI 198 (375)
T ss_pred CCCCHHHHHHHHHHHH-hcCCCEEEeeeee
Confidence 3456666666665443 4666777666554
No 241
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=34.17 E-value=22 Score=34.14 Aligned_cols=55 Identities=16% Similarity=0.217 Sum_probs=34.2
Q ss_pred cCceeEEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHHHHHcCCe
Q 020098 189 QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGIT 248 (331)
Q Consensus 189 ~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~ 248 (331)
-|+||++||--++.++++++.+.-+ .-+..+.+..++...... .+++.+++.||.
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~----e~dly~~Q~~ifLDP~DP-~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTEN----EKDLYERQLDVFLDPHDP-AVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCcc----HHHHHHHHHhhhcCCCCH-HHHHHHHHcCCc
Confidence 3999999999999999998855421 123333333333222211 477777777775
No 242
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=34.13 E-value=3.6e+02 Score=24.46 Aligned_cols=108 Identities=18% Similarity=0.149 Sum_probs=58.1
Q ss_pred HHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCC-------CCCCHHHHHHHH
Q 020098 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALP-------WRLGRQSVLAAL 151 (331)
Q Consensus 79 ~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~-------~~~~~~~i~~~v 151 (331)
+.+++|++.|...|.-...... ++.+ +.++++. -.+++...-+... +....+.+.+.+
T Consensus 86 ~vi~~al~~G~~iINsis~~~~---------~~~~-~l~~~~~-----~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~ 150 (257)
T TIGR01496 86 EVARAALEAGADIINDVSGGQD---------PAML-EVAAEYG-----VPLVLMHMRGTPRTMQENPHYEDVVEEVLRFL 150 (257)
T ss_pred HHHHHHHHcCCCEEEECCCCCC---------chhH-HHHHHcC-----CcEEEEeCCCCCcccccCCCcccHHHHHHHHH
Confidence 4577788888888875433222 3333 3355543 3566654433210 111133344444
Q ss_pred HHH---HHhhCCCcccEEEeccCCC----CChHHHHHHHHHHHHcCceeEEEeecCc
Q 020098 152 KDS---LFRLGLSSVELYQLHWAGI----WGNEGFIDGLGDAVEQGLVKAVGVSNYS 201 (331)
Q Consensus 152 ~~s---L~~Lg~d~iDl~~lh~p~~----~~~~~~~~~L~~l~~~G~i~~iGvs~~~ 201 (331)
++. +.+.|++.-|+++=-.... ...-++++.++++++.|.=-.+|+||-+
T Consensus 151 ~~~i~~~~~~Gi~~~~iilDPg~gf~ks~~~~~~~l~~i~~l~~~~~p~l~G~SrkS 207 (257)
T TIGR01496 151 EARAEELVAAGVAAERIILDPGIGFGKTPEHNLELLKHLEEFVALGYPLLVGASRKS 207 (257)
T ss_pred HHHHHHHHHcCCCHHHEEEECCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecccH
Confidence 444 4556887555544221111 1234677888888887866789999865
No 243
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=33.96 E-value=4.7e+02 Score=25.74 Aligned_cols=147 Identities=12% Similarity=0.147 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHH-hccCCC---CCCcEEEE--ecCCCCCCCCCHHHH
Q 020098 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIK-ERKQRD---PEVEVTVA--TKFAALPWRLGRQSV 147 (331)
Q Consensus 74 ~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~-~~~~~~---~R~~~~i~--tK~~~~~~~~~~~~i 147 (331)
.+.=.+-++.|++.|-..+-==+..|+ -..+-+.+- ..+..+ |=-+.+.- .|-+ ...+.+.+.+
T Consensus 76 ~~~E~~K~~~A~~~GADtiMDLStggd---------l~~iR~~il~~s~vpvGTVPiYqa~~~~~~k~~-~~~~mt~d~~ 145 (431)
T PRK13352 76 IEEELEKAKVAVKYGADTIMDLSTGGD---------LDEIRRAIIEASPVPVGTVPIYQAAVEAARKYG-SVVDMTEDDL 145 (431)
T ss_pred HHHHHHHHHHHHHcCCCeEeeccCCCC---------HHHHHHHHHHcCCCCCcChhHHHHHHHHHhcCC-ChhhCCHHHH
Confidence 344445689999999874432233444 444444443 222110 00000000 0001 1135677777
Q ss_pred HHHHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecCcHHHHHHHHHHHHhcCCCeeeeeeccc
Q 020098 148 LAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (331)
Q Consensus 148 ~~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n 227 (331)
.+.+++-.+ |=+|.+-||--- ..+.++.++++|++ .|+-+-....+..++.. .-.=|
T Consensus 146 ~~~ie~qa~----~GVDfmTiHcGi------~~~~~~~~~~~~R~--~giVSRGGs~~~~WM~~-----------n~~EN 202 (431)
T PRK13352 146 FDVIEKQAK----DGVDFMTIHCGV------TRETLERLKKSGRI--MGIVSRGGSFLAAWMLH-----------NNKEN 202 (431)
T ss_pred HHHHHHHHH----hCCCEEEEccch------hHHHHHHHHhcCCc--cCeecCCHHHHHHHHHH-----------cCCcC
Confidence 777776664 568889999742 36778889999854 67776655554444322 11223
Q ss_pred ccccCccccchhHHHHHcCCeEEEcccCcccc
Q 020098 228 LIYRKPEENGVKAACDELGITLIAYCPIAQGA 259 (331)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~ 259 (331)
|+...-. .+++.|++++|.+ +|+.|+
T Consensus 203 Plye~fD--~lLeI~~~yDVtl----SLGDgl 228 (431)
T PRK13352 203 PLYEHFD--YLLEILKEYDVTL----SLGDGL 228 (431)
T ss_pred chHHHHH--HHHHHHHHhCeee----eccCCc
Confidence 4443322 4899999999887 455554
No 244
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=33.94 E-value=4.8e+02 Score=25.82 Aligned_cols=111 Identities=11% Similarity=0.009 Sum_probs=66.5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcccEEEeccCCC-C-ChHHHHHHHHHHHHcCceeEEEeecCc---HHHHHHHHHHHHhc
Q 020098 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-W-GNEGFIDGLGDAVEQGLVKAVGVSNYS---EKRLRNAYEKLKKR 215 (331)
Q Consensus 141 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~-~-~~~~~~~~L~~l~~~G~i~~iGvs~~~---~~~l~~~~~~~~~~ 215 (331)
..+++.+.+.+++....++ .++.+-|-.|.. . ..+.+++.|..++++..=..+.+++.. ++.++++.+.
T Consensus 59 ~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~---- 132 (442)
T TIGR01290 59 LLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDL---- 132 (442)
T ss_pred cCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHC----
Confidence 3678888888888776652 356677777554 2 235688888888887211246666654 5666666432
Q ss_pred CCCeeeeeecccccccCccc--------------------------cchhHHHHHcCCeEEEcccCcccc
Q 020098 216 GIPLASNQVNYSLIYRKPEE--------------------------NGVKAACDELGITLIAYCPIAQGA 259 (331)
Q Consensus 216 ~~~~~~~q~~~n~~~~~~~~--------------------------~~~l~~~~~~gi~v~a~s~l~~G~ 259 (331)
..+.+.+.++-++..... .+-++.+.+.|+.+....++-.|+
T Consensus 133 --gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlIpGi 200 (442)
T TIGR01290 133 --GVGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLIPGI 200 (442)
T ss_pred --CCCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEeeCCc
Confidence 244455555544321110 012455778888888888877663
No 245
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=33.94 E-value=1.8e+02 Score=29.50 Aligned_cols=94 Identities=14% Similarity=0.119 Sum_probs=55.5
Q ss_pred eEECCcCcCCCCCCC-CCchH-----HHHHHHHHhccCCCCCCcEEEEecCCCC---------CCCCCH----HHHHHHH
Q 020098 91 FFDTAEVYGSRASFG-AINSE-----TLLGRFIKERKQRDPEVEVTVATKFAAL---------PWRLGR----QSVLAAL 151 (331)
Q Consensus 91 ~~Dta~~Yg~g~~~~-~~~sE-----~~iG~~l~~~~~~~~R~~~~i~tK~~~~---------~~~~~~----~~i~~~v 151 (331)
+|+|+.-|-||.- | .|... .++.|+++..+ .+++..+-.... ..+.++ +...+.+
T Consensus 6 ~i~~~~py~ng~~-HiGH~~~~~~~~D~~~R~~r~~G-----~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~ 79 (556)
T PRK12268 6 LITSAWPYANGPL-HLGHLAGSGLPADVFARYQRLKG-----NEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEH 79 (556)
T ss_pred EEecCCCCCCCCc-cccccccchhHHHHHHHHHHhcC-----CceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6788888876542 2 12233 35555555543 456655544220 012222 4456778
Q ss_pred HHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCce
Q 020098 152 KDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLV 192 (331)
Q Consensus 152 ~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i 192 (331)
.+.+++||++ .|.+.- -.++.-.+.+.+.+++|+++|.|
T Consensus 80 ~~~~~~l~i~-~d~~~~-t~~~~~~~~~~~~~~~L~~~G~~ 118 (556)
T PRK12268 80 KEDFKKLGIS-YDLFTR-TTSPNHHEVVQEFFLKLYENGYI 118 (556)
T ss_pred HHHHHHcCCc-CCCCcC-CCCHHHHHHHHHHHHHHHHCCCe
Confidence 8999999997 474321 11112257788999999999997
No 246
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=33.66 E-value=3.7e+02 Score=24.50 Aligned_cols=108 Identities=16% Similarity=0.074 Sum_probs=63.0
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCC----CChHHHHHHHHHHHH--cCce-eEEEeecCcHHHHHHHHHHH
Q 020098 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI----WGNEGFIDGLGDAVE--QGLV-KAVGVSNYSEKRLRNAYEKL 212 (331)
Q Consensus 140 ~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~----~~~~~~~~~L~~l~~--~G~i-~~iGvs~~~~~~l~~~~~~~ 212 (331)
...+.+.+++.++..++. | +|-+++-...- ...+|-.+.++..++ .|++ -.+|++..+.++..++.+.+
T Consensus 17 g~id~~~~~~~i~~l~~~-G---v~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a 92 (289)
T PF00701_consen 17 GSIDEDALKRLIDFLIEA-G---VDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHA 92 (289)
T ss_dssp SSB-HHHHHHHHHHHHHT-T---SSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHHHc-C---CCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHH
Confidence 345666677766666643 4 66666654322 334554444444443 3554 67899998888888888888
Q ss_pred HhcCCCeeeeeecccccccCccccchhHH----HHHcCCeEEEccc
Q 020098 213 KKRGIPLASNQVNYSLIYRKPEENGVKAA----CDELGITLIAYCP 254 (331)
Q Consensus 213 ~~~~~~~~~~q~~~n~~~~~~~~~~~l~~----~~~~gi~v~a~s~ 254 (331)
+..|..-.++..+|.... ..+ +++++ |..-++.++.|.-
T Consensus 93 ~~~Gad~v~v~~P~~~~~-s~~--~l~~y~~~ia~~~~~pi~iYn~ 135 (289)
T PF00701_consen 93 QDAGADAVLVIPPYYFKP-SQE--ELIDYFRAIADATDLPIIIYNN 135 (289)
T ss_dssp HHTT-SEEEEEESTSSSC-CHH--HHHHHHHHHHHHSSSEEEEEEB
T ss_pred hhcCceEEEEeccccccc-hhh--HHHHHHHHHHhhcCCCEEEEEC
Confidence 888876555555544321 111 34444 4455888888764
No 247
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=33.62 E-value=4.2e+02 Score=25.60 Aligned_cols=90 Identities=19% Similarity=0.205 Sum_probs=57.9
Q ss_pred EeccCCC------------CChHHHHHHHHHHHHcC-------ceeEEEeec--CcHHHHHHHHHHHHhcCCCeeeeeec
Q 020098 167 QLHWAGI------------WGNEGFIDGLGDAVEQG-------LVKAVGVSN--YSEKRLRNAYEKLKKRGIPLASNQVN 225 (331)
Q Consensus 167 ~lh~p~~------------~~~~~~~~~L~~l~~~G-------~i~~iGvs~--~~~~~l~~~~~~~~~~~~~~~~~q~~ 225 (331)
.+|.+++ ++.+++++++.+..++- .|+++=+.+ .+.+.++++.+.+.. .+..++-++
T Consensus 221 SLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~~~~~rrI~irypLIpGvNDs~e~a~~La~ll~~--l~~~VnLIP 298 (372)
T PRK11194 221 SLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHVNDGTEHAHQLAELLKD--TPCKINLIP 298 (372)
T ss_pred eccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhcccCCCeEEEEEEeECCCCCCHHHHHHHHHHHhc--CCceEEEec
Confidence 4898775 23466776666655432 246665654 477888888777654 346888999
Q ss_pred ccccccCccc-------cchhHHHHHcCCeEEEcccCccc
Q 020098 226 YSLIYRKPEE-------NGVKAACDELGITLIAYCPIAQG 258 (331)
Q Consensus 226 ~n~~~~~~~~-------~~~l~~~~~~gi~v~a~s~l~~G 258 (331)
||++...... ..+.+..+++|+.+......+..
T Consensus 299 YN~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~d 338 (372)
T PRK11194 299 WNPFPGAPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDD 338 (372)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEecCCCCc
Confidence 9987643211 13566677889999886655543
No 248
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=33.40 E-value=2e+02 Score=29.72 Aligned_cols=67 Identities=18% Similarity=0.090 Sum_probs=43.5
Q ss_pred HhhCCCcccEEEec-cCCCCChHHHHHHHHHHHHcCceeEEEee-cCcHHHHHHHHHHHHhcCCCeeeeeeccc
Q 020098 156 FRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (331)
Q Consensus 156 ~~Lg~d~iDl~~lh-~p~~~~~~~~~~~L~~l~~~G~i~~iGvs-~~~~~~l~~~~~~~~~~~~~~~~~q~~~n 227 (331)
..+|.|++=+++.. +|...+.+.+...+.+......+..|||- |-+++.+.++.+. ..++++|+.-+
T Consensus 20 ~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~-----~~ld~vQLHG~ 88 (610)
T PRK13803 20 VDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKK-----NGIDFVQLHGA 88 (610)
T ss_pred HHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHh-----cCCCEEEECCC
Confidence 55899999987654 34434455513333333322347789986 6688888888665 67899999864
No 249
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=33.30 E-value=4.3e+02 Score=25.11 Aligned_cols=168 Identities=13% Similarity=0.119 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHCCCCeEECC--cC--c---CCCCCCCCCchHHHHHHH---HHhccCCCCCCcEEEEecCCC-CCCCCC
Q 020098 75 KAAKAAFDTSLDNGITFFDTA--EV--Y---GSRASFGAINSETLLGRF---IKERKQRDPEVEVTVATKFAA-LPWRLG 143 (331)
Q Consensus 75 ~~~~~~l~~A~~~Gvn~~Dta--~~--Y---g~g~~~~~~~sE~~iG~~---l~~~~~~~~R~~~~i~tK~~~-~~~~~~ 143 (331)
.-+.+++..+.+.||.+++.- +. | +.|.+ .++++--. ++...... ++ .|..++=. .....+
T Consensus 70 ~~~~~~~~d~~~dgV~Y~Eir~~P~~~~~~~~~g~~-----~~~v~~av~~~~~~~~~~~-~~--~i~v~lI~~~~R~~~ 141 (345)
T cd01321 70 DYYRRLLEELYEDNVQYVELRSSFSPLYDLDGREYD-----YEETVQLLEEVVEKFKKTH-PD--FIGLKIIYATLRNFN 141 (345)
T ss_pred HHHHHHHHHHHHcCCEEEEEeecchHHHHccCCCCC-----HHHHHHHHHHHHHHHHHhC-CC--CceEEEEEEecCCCC
Confidence 456777888889999998853 31 2 23333 33343333 34433211 11 23333210 113456
Q ss_pred HHHHHHHHHHHHHhhC--CCcccEEEeccCCC--CChHHHHHHHHHHHHcC--c--eeEEEeecC----cHHHHHHHHHH
Q 020098 144 RQSVLAALKDSLFRLG--LSSVELYQLHWAGI--WGNEGFIDGLGDAVEQG--L--VKAVGVSNY----SEKRLRNAYEK 211 (331)
Q Consensus 144 ~~~i~~~v~~sL~~Lg--~d~iDl~~lh~p~~--~~~~~~~~~L~~l~~~G--~--i~~iGvs~~----~~~~l~~~~~~ 211 (331)
.+...+.++...+--. .++|=-+=|..++. .+....+..++.+++.| . +-|.|=++. .++.+.+++.
T Consensus 142 ~e~~~e~~~~a~~~~~~~~~~VvGidL~G~E~~~~~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~~~~~~~~v~~al~- 220 (345)
T cd01321 142 DSEIKESMEQCLNLKKKFPDFIAGFDLVGQEDAGRPLLDFLPQLLWFPKQCAEIPFFFHAGETNGDGTETDENLVDALL- 220 (345)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEecCCCccCCCCHHHHHHHHHHHHHhCCCCceEeecCCCcCCCCCChhHHHHHHH-
Confidence 6777777776665321 11221122233331 35677888888888887 2 356664432 2345555542
Q ss_pred HHhcCCCeeeeeecccccccCccccchhHHHHHcCCeEEEcccCccccccC
Q 020098 212 LKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTG 262 (331)
Q Consensus 212 ~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~L~~ 262 (331)
. .+.=+.--+++.. . ..+++.+++++|.+.. .|.. +++++
T Consensus 221 l-----g~~RIGHG~~~~~-d---p~ll~~l~~~~I~lEv-CPtS-N~~~~ 260 (345)
T cd01321 221 L-----NTKRIGHGFALPK-H---PLLMDLVKKKNIAIEV-CPIS-NQVLG 260 (345)
T ss_pred h-----CCCcCccccccCc-C---HHHHHHHHHcCCeEEE-Ccch-hhhhc
Confidence 1 1111112222221 1 1499999999999887 3433 34443
No 250
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=33.28 E-value=1.2e+02 Score=28.32 Aligned_cols=87 Identities=11% Similarity=0.028 Sum_probs=51.5
Q ss_pred ccEEEeccCCCCChHHHHHHHHHHHHcCce-eEEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHH
Q 020098 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLV-KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (331)
Q Consensus 163 iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i-~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~ 241 (331)
.++.+|..|-+ .. +.+..+.++-.+ -..|=|-++.+.+.++++. ...+++|+...-.-.-.+-..+.+.
T Consensus 183 ~~i~~iEqP~~--~~---~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~-----~~~d~i~ik~~~~GGi~~~~~i~~~ 252 (307)
T TIGR01927 183 GRIAFLEEPLP--DA---DEMSAFSEATGTAIALDESLWELPQLADEYGP-----GWRGALVIKPAIIGSPAKLRDLAQK 252 (307)
T ss_pred CCceEEeCCCC--CH---HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhc-----CCCceEEECchhcCCHHHHHHHHHH
Confidence 45666666542 11 556666655433 3555556677777776543 2355666555433211111258999
Q ss_pred HHHcCCeEEEcccCcccc
Q 020098 242 CDELGITLIAYCPIAQGA 259 (331)
Q Consensus 242 ~~~~gi~v~a~s~l~~G~ 259 (331)
|+.+||.++..+.+..|+
T Consensus 253 a~~~gi~~~~~~~~es~i 270 (307)
T TIGR01927 253 AHRLGLQAVFSSVFESSI 270 (307)
T ss_pred HHHcCCCEEEECccchHH
Confidence 999999999987777664
No 251
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=33.23 E-value=4.7e+02 Score=25.57 Aligned_cols=152 Identities=11% Similarity=0.032 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 020098 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (331)
Q Consensus 74 ~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~ 153 (331)
.++..+.....++.|++.|=.--..... .+...=+++++.- -+++.|..=.. ..++.+...+
T Consensus 197 ~~~~~~~a~~~~~~Gf~~~KiKvg~~~~-------~d~~~v~avRe~v----G~~~~L~vDaN---~~w~~~~A~~---- 258 (415)
T cd03324 197 DEKLRRLCKEALAQGFTHFKLKVGADLE-------DDIRRCRLAREVI----GPDNKLMIDAN---QRWDVPEAIE---- 258 (415)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCHH-------HHHHHHHHHHHhc----CCCCeEEEECC---CCCCHHHHHH----
Confidence 4556666777778899976542111110 0112223343322 13333333221 2344544332
Q ss_pred HHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcC---ce-eEEEeecCcHHHHHHHHHHHHhcCCCeeeeeeccccc
Q 020098 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG---LV-KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLI 229 (331)
Q Consensus 154 sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G---~i-~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~ 229 (331)
.+++|. -.++.++..|-.. +-++.+.+|++.. .| -..|=+.++.+.+.++++. ...+++|+...-.
T Consensus 259 ~~~~L~--~~~l~~iEEP~~~---~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~-----~a~dil~~d~~~~ 328 (415)
T cd03324 259 WVKQLA--EFKPWWIEEPTSP---DDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQA-----GAIDVVQIDSCRL 328 (415)
T ss_pred HHHHhh--ccCCCEEECCCCC---CcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHc-----CCCCEEEeCcccc
Confidence 223332 2355666666432 2355666666653 23 3455566788888888654 3577888776543
Q ss_pred ccCccccchhHHHHHcCCeEEEcc
Q 020098 230 YRKPEENGVKAACDELGITLIAYC 253 (331)
Q Consensus 230 ~~~~~~~~~l~~~~~~gi~v~a~s 253 (331)
-.-.+-..+.+.|+.+|+.+..++
T Consensus 329 GGit~~~kia~lA~a~gi~~~pH~ 352 (415)
T cd03324 329 GGVNENLAVLLMAAKFGVPVCPHA 352 (415)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEcC
Confidence 321122258899999999998874
No 252
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=33.17 E-value=2e+02 Score=23.86 Aligned_cols=62 Identities=15% Similarity=0.242 Sum_probs=44.6
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhh--CCCcccEEEeccCCC--CChHHHHHHHHHHHHc
Q 020098 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRL--GLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (331)
Q Consensus 126 R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~L--g~d~iDl~~lh~p~~--~~~~~~~~~L~~l~~~ 189 (331)
|=.+.|+-|++. ....+..+++.+.++++.+ .+.-.|++++-.+.. .+..++.+.|..|.+.
T Consensus 49 RlG~sVSKKvg~--~AV~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~~~~~~~l~~~l~~LL~k 114 (145)
T PRK04820 49 RLGLAVSRKVDT--RAVGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAAKASNPQLRDAFLRLLRR 114 (145)
T ss_pred EEEEEEeccccC--cchhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 677888888753 3567888888888888765 233449888887764 4567777777777765
No 253
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=33.02 E-value=3.2e+02 Score=23.48 Aligned_cols=118 Identities=15% Similarity=0.194 Sum_probs=70.8
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCC---CChHHHHHHHHHHHHcCceeEEEeecCc--
Q 020098 127 VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNYS-- 201 (331)
Q Consensus 127 ~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~---~~~~~~~~~L~~l~~~G~i~~iGvs~~~-- 201 (331)
....+.-.+.. .....+.....+...++..+..- +-+.+--++. .....+.+.+..+++.|- .+++.+|.
T Consensus 82 ~~~~l~ini~~--~~l~~~~~~~~~~~~l~~~~~~~-~~l~iei~e~~~~~~~~~~~~~~~~l~~~G~--~l~ld~~g~~ 156 (240)
T cd01948 82 PDLRLSVNLSA--RQLRDPDFLDRLLELLAETGLPP-RRLVLEITESALIDDLEEALATLRRLRALGV--RIALDDFGTG 156 (240)
T ss_pred CCeEEEEECCH--HHhCCcHHHHHHHHHHHHcCCCH-HHEEEEEecchhhCCHHHHHHHHHHHHHCCC--eEEEeCCCCc
Confidence 34445555432 22334445677888888888764 2333332222 345568899999999994 47777764
Q ss_pred HHHHHHHHHHHHhcCCCeeeeeecccccccCcc-------ccchhHHHHHcCCeEEEcccC
Q 020098 202 EKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPE-------ENGVKAACDELGITLIAYCPI 255 (331)
Q Consensus 202 ~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~-------~~~~l~~~~~~gi~v~a~s~l 255 (331)
...++.+.. ++|+++-+..+.+..-.. -..++..|+..|+.+++-..-
T Consensus 157 ~~~~~~l~~------~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gVe 211 (240)
T cd01948 157 YSSLSYLKR------LPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEGVE 211 (240)
T ss_pred HhhHHHHHh------CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEecC
Confidence 233334322 467777777665544221 125889999999999985443
No 254
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=32.99 E-value=1.2e+02 Score=23.71 Aligned_cols=72 Identities=24% Similarity=0.140 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCC-CC--------------
Q 020098 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFA-AL-------------- 138 (331)
Q Consensus 74 ~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~-~~-------------- 138 (331)
+.-....---+++.|.-|+-|-..|--|. |.++---|-..+ ++++|.+|+. ..
T Consensus 19 ~a~LYsaYMpfl~nGglFVpTnk~y~iG~-------evfl~l~lld~p-----ekl~vagkVaWitP~gt~sr~~GiGv~ 86 (117)
T COG3215 19 MALLYSAYMPFLENGGLFVPTNKVYSIGE-------EVFLLLELLDFP-----EKLPVAGKVAWITPVGTQSRPAGIGVQ 86 (117)
T ss_pred HHHHHHHHhHHHhcCcEEcccCCccccch-------hhhhhhhhcCch-----hhccccceEEEEccCCCCCCCCceeee
Confidence 34455555666799999999999997764 777766666664 7888888873 21
Q ss_pred -CCCCCHHHHHHHHHHHHHh
Q 020098 139 -PWRLGRQSVLAALKDSLFR 157 (331)
Q Consensus 139 -~~~~~~~~i~~~v~~sL~~ 157 (331)
..+..-..+++++|..|-.
T Consensus 87 f~d~e~g~~vr~~IE~~Lg~ 106 (117)
T COG3215 87 FTDGENGLKVRNQIETLLGG 106 (117)
T ss_pred ccCCCchhhHHHHHHHHHHh
Confidence 1122344688888887754
No 255
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=32.97 E-value=2.4e+02 Score=29.49 Aligned_cols=98 Identities=14% Similarity=-0.003 Sum_probs=54.8
Q ss_pred eEECCcCcCCCCCCC-CCchHHHHHHHHHhccCCCCCCcEEEEecCCCC---------CCCCC----HHHHHHHHHHHHH
Q 020098 91 FFDTAEVYGSRASFG-AINSETLLGRFIKERKQRDPEVEVTVATKFAAL---------PWRLG----RQSVLAALKDSLF 156 (331)
Q Consensus 91 ~~Dta~~Yg~g~~~~-~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~---------~~~~~----~~~i~~~v~~sL~ 156 (331)
+|.|+..|.||.- | .|....++++.+.+.-... -.+++..+-.... ..+.+ .+...+.+.+.++
T Consensus 5 ~itt~~py~ng~~-HiGH~~~~l~aDv~aR~~r~~-G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~ 82 (673)
T PRK00133 5 LVTCALPYANGPI-HLGHLVEYIQADIWVRYQRMR-GHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFA 82 (673)
T ss_pred EEeCCCCCCCCcc-cccchHHHHHHHHHHHHHHhc-CCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 6788888888643 2 2223344444444332110 1455555543210 01122 3456677889999
Q ss_pred hhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCce
Q 020098 157 RLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLV 192 (331)
Q Consensus 157 ~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i 192 (331)
+||+++ |.+.-. .++.-.+.+.+.+.+|.++|.|
T Consensus 83 ~l~i~~-d~f~rt-t~~~h~~~v~~~~~~L~~~G~i 116 (673)
T PRK00133 83 GFGISF-DNYGST-HSEENRELAQEIYLKLKENGYI 116 (673)
T ss_pred HhCCCC-CCCccC-CcHHHHHHHHHHHHHHHHCCCE
Confidence 999984 742211 1112357789999999999987
No 256
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=32.90 E-value=1.7e+02 Score=30.21 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=7.3
Q ss_pred HHcCCeEEEcccCccc
Q 020098 243 DELGITLIAYCPIAQG 258 (331)
Q Consensus 243 ~~~gi~v~a~s~l~~G 258 (331)
.+.|+..+...=..|.
T Consensus 164 ~~~Gad~I~i~Dt~G~ 179 (592)
T PRK09282 164 EEMGCDSICIKDMAGL 179 (592)
T ss_pred HHcCCCEEEECCcCCC
Confidence 3445555554444443
No 257
>PLN02389 biotin synthase
Probab=32.89 E-value=4.6e+02 Score=25.34 Aligned_cols=128 Identities=14% Similarity=0.141 Sum_probs=69.6
Q ss_pred CchhhHHHHHHHHHHHHHCCCCeEECCcC-cCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHH
Q 020098 69 WDDRKMKAAKAAFDTSLDNGITFFDTAEV-YGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSV 147 (331)
Q Consensus 69 ~~~~~~~~~~~~l~~A~~~Gvn~~Dta~~-Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i 147 (331)
+...+.++..+.++.+.+.|++.|--... .+.+. ....-+.+-+.++... ...+.|....|. .+.+.+
T Consensus 113 ~~~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~---e~~~~e~i~eiir~ik----~~~l~i~~s~G~----l~~E~l 181 (379)
T PLN02389 113 QKLMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVG---RKTNFNQILEYVKEIR----GMGMEVCCTLGM----LEKEQA 181 (379)
T ss_pred cccCCHHHHHHHHHHHHHcCCCEEEEEecccCCCC---ChhHHHHHHHHHHHHh----cCCcEEEECCCC----CCHHHH
Confidence 34567899999999999999998743211 11110 0001345556666553 123445544432 333333
Q ss_pred HHHHHHHHHhhCCCcccEEEecc-CCC-------CChHHHHHHHHHHHHcCcee----EEEeecCcHHHHHHHHHHHHh
Q 020098 148 LAALKDSLFRLGLSSVELYQLHW-AGI-------WGNEGFIDGLGDAVEQGLVK----AVGVSNYSEKRLRNAYEKLKK 214 (331)
Q Consensus 148 ~~~v~~sL~~Lg~d~iDl~~lh~-p~~-------~~~~~~~~~L~~l~~~G~i~----~iGvs~~~~~~l~~~~~~~~~ 214 (331)
+-|+.-|+|++.+- +.. ++. ...++.++.++.+++.|.=- -+|+ +.+.+...+.+..++.
T Consensus 182 -----~~LkeAGld~~~~~-LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGl-gEt~edrv~~l~~Lr~ 253 (379)
T PLN02389 182 -----AQLKEAGLTAYNHN-LDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGL-GEAEEDRVGLLHTLAT 253 (379)
T ss_pred -----HHHHHcCCCEEEee-ecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECC-CCCHHHHHHHHHHHHh
Confidence 33555577765442 221 101 24678899999999998521 2455 4455555555444444
No 258
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=32.78 E-value=4.2e+02 Score=24.77 Aligned_cols=174 Identities=13% Similarity=0.073 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccC-------CCCCCcEEEEecCCCC--------
Q 020098 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQ-------RDPEVEVTVATKFAAL-------- 138 (331)
Q Consensus 74 ~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~-------~~~R~~~~i~tK~~~~-------- 138 (331)
++..+++-..++++|-+.++|...=-....+..--+++-+.+.++...+ ..-.+...|.--+|+.
T Consensus 42 peiv~~vh~df~~aGa~ii~T~TYqa~~~~~~e~~~~~~~~~l~~~sv~la~~ard~~g~~~~~iagsiGP~ga~~a~Ey 121 (300)
T COG2040 42 PEIVRNVHADFLRAGADIITTATYQATPEGFAERVSEDEAKQLIRRSVELARAARDAYGEENQNIAGSLGPYGAALADEY 121 (300)
T ss_pred HHHHHHHHHHHHHhcCcEEeehhhhcCHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccccccceeccchhhhcChhh
Confidence 5778888888999999999986432111110000012222222211100 0013344455555541
Q ss_pred --CCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCC-CChHHHHHHHHHHHHcCceeEEEeecCc------HHHHHHHH
Q 020098 139 --PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKAVGVSNYS------EKRLRNAY 209 (331)
Q Consensus 139 --~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~-~~~~~~~~~L~~l~~~G~i~~iGvs~~~------~~~l~~~~ 209 (331)
.+..+.+.+.+-.+.-++.|.-.-+|++.+..-.. ...+.+++.+++. +|=-+|+++-.+ ...+.++.
T Consensus 122 ~g~Y~~~~d~~~~fh~~rie~l~~ag~Dlla~ETip~i~Ea~Aiv~l~~~~---s~p~wISfT~~d~~~lr~Gt~l~eaa 198 (300)
T COG2040 122 RGDYGASQDALYKFHRPRIEALNEAGADLLACETLPNITEAEAIVQLVQEF---SKPAWISFTLNDDTRLRDGTPLSEAA 198 (300)
T ss_pred cCccCccHHHHHHHHHHHHHHHHhCCCcEEeecccCChHHHHHHHHHHHHh---CCceEEEEEeCCCCccCCCccHHHHH
Confidence 23456676666677777777766799999876433 3345556666666 888899998662 24566666
Q ss_pred HHHHhcCCCeeeeeecccccccCccccchhHHH--HHcCCeEEEccc
Q 020098 210 EKLKKRGIPLASNQVNYSLIYRKPEENGVKAAC--DELGITLIAYCP 254 (331)
Q Consensus 210 ~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~--~~~gi~v~a~s~ 254 (331)
.+++.. -.+..+-+++--.+.-. .+++.. +..++.+++|.-
T Consensus 199 ~~~~~~-~~iaa~gvNC~~p~~~~---a~i~~l~~~~~~~piivYPN 241 (300)
T COG2040 199 AILAGL-PNIAALGVNCCHPDHIP---AAIEELSKLLTGKPIIVYPN 241 (300)
T ss_pred HHHhcC-cchhheeeccCChhhhH---HHHHHHHhcCCCCceEEcCC
Confidence 655432 13444555554444433 377777 455888999876
No 259
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=32.52 E-value=4.5e+02 Score=25.06 Aligned_cols=61 Identities=15% Similarity=0.103 Sum_probs=36.8
Q ss_pred HHHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHH---H--H---HcCceeEEEeec-CcHHHHHHHHH
Q 020098 149 AALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGD---A--V---EQGLVKAVGVSN-YSEKRLRNAYE 210 (331)
Q Consensus 149 ~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~---l--~---~~G~i~~iGvs~-~~~~~l~~~~~ 210 (331)
..+|+.|.- |+..-++..+..+...+...++-.+-. + . ..|++-+|-.-+ |+++++.++.+
T Consensus 110 ~~LD~lL~G-G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~ 179 (342)
T PLN03186 110 RELDKILEG-GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAE 179 (342)
T ss_pred HHHHHhhcC-CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHH
Confidence 345555532 677788999988665443333322211 1 1 235888888876 68888888743
No 260
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=32.42 E-value=3.1e+02 Score=24.30 Aligned_cols=109 Identities=21% Similarity=0.251 Sum_probs=57.5
Q ss_pred HHHHHHHHcCceeEEEeec---CcHH--HHHHHHHHHHhcCCCeeeeeeccc-ccccCccc--------cchhHHHHHcC
Q 020098 181 DGLGDAVEQGLVKAVGVSN---YSEK--RLRNAYEKLKKRGIPLASNQVNYS-LIYRKPEE--------NGVKAACDELG 246 (331)
Q Consensus 181 ~~L~~l~~~G~i~~iGvs~---~~~~--~l~~~~~~~~~~~~~~~~~q~~~n-~~~~~~~~--------~~~l~~~~~~g 246 (331)
+.++..++.| ...|.+.. +... .+.++.+.++..+..+...+...+ +++..... ...++.|++.|
T Consensus 19 ~~l~~~~~~G-~~gvEi~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg 97 (274)
T COG1082 19 EILRKAAELG-FDGVELSPGDLFPADYKELAELKELLADYGLEITSLAPFSNNLLSPDEEEREEALEELKRAIELAKELG 97 (274)
T ss_pred HHHHHHHHhC-CCeEecCCcccCCchhhhHHHHHHHHHHcCcEEEeecccCCCcCCCchhhHHHHHHHHHHHHHHHHHcC
Confidence 3445555556 55555553 1111 255555556666666666555555 34433210 12788899999
Q ss_pred CeEEEcccCccccccCCCCCCCCCCCCCCCccchhHHhhHHHHHHHHHHHHHhcCCC
Q 020098 247 ITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKT 303 (331)
Q Consensus 247 i~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s 303 (331)
+.++...+-....- .... . .....+...+.+..+.++|+++++.
T Consensus 98 ~~~vv~~~g~~~~~---~~~~-~---------~~~~~~~~~~~l~~l~~~a~~~~i~ 141 (274)
T COG1082 98 AKVVVVHPGLGAGA---DDPD-S---------PEEARERWAEALEELAEIAEELGIG 141 (274)
T ss_pred CCeEEeecccCCcC---CCCC-C---------CcccHHHHHHHHHHHHHHHHHhCCc
Confidence 88776544332210 0000 0 0111244566677888888888653
No 261
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=32.01 E-value=5.1e+02 Score=25.59 Aligned_cols=157 Identities=15% Similarity=0.110 Sum_probs=81.7
Q ss_pred hhHHHHHHHHHHHHHC-CCCeEECCcCcCCCCCCCCCchHHHHHHHHH-hccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 020098 72 RKMKAAKAAFDTSLDN-GITFFDTAEVYGSRASFGAINSETLLGRFIK-ERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (331)
Q Consensus 72 ~~~~~~~~~l~~A~~~-Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~-~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~ 149 (331)
.+.+...+.+...++. +-.. +-.|+.... -..=-+.+.+.+. .+......++|+|++-. ..
T Consensus 104 fp~~~~~~~~~~~~~~~~~~~---~~~y~~~~G--~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~------------q~ 166 (459)
T COG1167 104 FPLEALRRALARVLRNYGASL---ALQYGPTAG--LPELREAIAAYLLARRGISCEPEQIVITSGA------------QQ 166 (459)
T ss_pred CCHHHHHHHHHHHHhhcchhh---hhcCCCCCC--cHHHHHHHHHHHHHhcCCccCcCeEEEeCCH------------HH
Confidence 4456777777776643 3331 122333111 0000234555555 44443335677777654 13
Q ss_pred HHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeec----CcHHHHHHHHHHHHhcCCCeeee---
Q 020098 150 ALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN----YSEKRLRNAYEKLKKRGIPLASN--- 222 (331)
Q Consensus 150 ~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~----~~~~~l~~~~~~~~~~~~~~~~~--- 222 (331)
+++-.++-| ++-=|.+.+.+|.+ ..++.-+...| ++.++|.. .+++.+++.++ ...+++.++
T Consensus 167 al~l~~~~l-~~pGd~v~vE~PtY------~~~~~~~~~~g-~~~~~vp~d~~G~~~e~le~~~~---~~~~k~~y~~P~ 235 (459)
T COG1167 167 ALDLLLRLL-LDPGDTVLVEDPTY------PGALQALEALG-ARVIPVPVDEDGIDPEALEEALA---QWKPKAVYVTPT 235 (459)
T ss_pred HHHHHHHHh-CCCCCEEEEcCCCc------HHHHHHHHHcC-CcEEecCCCCCCCCHHHHHHHHh---hcCCcEEEECCC
Confidence 444333333 33448889988876 23333344444 45677653 45677777643 333444443
Q ss_pred -eecccccccCccccchhHHHHHcCCeEEEcccCc
Q 020098 223 -QVNYSLIYRKPEENGVKAACDELGITLIAYCPIA 256 (331)
Q Consensus 223 -q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~ 256 (331)
|++.........+..++++|+++|+-+|=--+++
T Consensus 236 ~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~ 270 (459)
T COG1167 236 FQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYG 270 (459)
T ss_pred CCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcch
Confidence 3333333322233369999999999999644443
No 262
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=31.98 E-value=33 Score=26.47 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=30.2
Q ss_pred cCcHHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHHHHHcCCeEEEcccCccc
Q 020098 199 NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (331)
Q Consensus 199 ~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G 258 (331)
.++.+.+.++++. -..+++|+...-.-.-.+-..+.+.|+++|+.+..++. ..+
T Consensus 4 ~~~~~~~~~li~~-----~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~ 57 (111)
T PF13378_consen 4 LFSLHDFRRLIEA-----GAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESG 57 (111)
T ss_dssp SSSHHHHHHHHHT-----TSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSH
T ss_pred CCCHHHHHHHHHc-----CCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCc
Confidence 4556666666543 34566666544331111112478888888888888776 443
No 263
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=31.90 E-value=2.2e+02 Score=21.34 Aligned_cols=65 Identities=11% Similarity=-0.029 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhhCCCcccEEEeccCCC-------CChHHHHHHHHHHHHcCceeEEEeecCcHHHHHHHH
Q 020098 145 QSVLAALKDSLFRLGLSSVELYQLHWAGI-------WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAY 209 (331)
Q Consensus 145 ~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~-------~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~ 209 (331)
..-.+++++.++.+|.+..++|+.-.+-+ .+.+.+....-.+...|-++.-=+--++.+++.+++
T Consensus 19 ~~R~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~~G~v~~et~~a~~~~e~~~~~ 90 (91)
T PF08734_consen 19 PDRAEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRSSGNVRTETLRAFPWDEFDEIV 90 (91)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHcCCceEEEEEecCCHHHHHHHh
Confidence 33456788889999999999888866533 234556777888888999887666677878777663
No 264
>TIGR00188 rnpA ribonuclease P protein component, eubacterial. The yeast mitochondrial RNase P protein component gene RPM2 has no obvious sequence similarity to rnpA, but resembles eukaryotic nuclear RNase P instead.
Probab=31.89 E-value=2e+02 Score=22.10 Aligned_cols=59 Identities=15% Similarity=0.245 Sum_probs=42.6
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhC--CCcccEEEeccCCC--CChHHHHHHHHHHH
Q 020098 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGI--WGNEGFIDGLGDAV 187 (331)
Q Consensus 126 R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg--~d~iDl~~lh~p~~--~~~~~~~~~L~~l~ 187 (331)
|=.+.|+-|+|. ...+..+++.+.++++... ....|++++-.+.. .+..++.+.|+.|.
T Consensus 42 RlGi~vsKK~g~---AV~RNriKR~lRe~~R~~~~~l~~~d~v~i~r~~~~~~~~~~l~~~l~~l~ 104 (105)
T TIGR00188 42 RVGLSVSKKVKN---AVERNRIKRLIREVFRERQELLKALDVVVIVRKGFSELTYEAFLKLLLQLF 104 (105)
T ss_pred EEEEEEecccCc---hhHHHHHHHHHHHHHHHhhcccCCccEEEEECCCcCcCCHHHHHHHHHHHh
Confidence 667888888763 5678888888888887652 23589999988765 45677777777653
No 265
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=31.56 E-value=2.3e+02 Score=25.40 Aligned_cols=84 Identities=18% Similarity=0.343 Sum_probs=52.5
Q ss_pred cHHHHHHHHHHHHhcCCCeeeee--ecccccccCc--cccchhHHHHHcCCeEEEcccCccccccCCCCCCCCCCCCCCC
Q 020098 201 SEKRLRNAYEKLKKRGIPLASNQ--VNYSLIYRKP--EENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGR 276 (331)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~q--~~~n~~~~~~--~~~~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~ 276 (331)
.+.++..+ +++.|+.+..+. .+||.++... +.+++.++++.-|-.-+...|+..|--.+ .
T Consensus 50 p~a~vka~---Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~~-------------~ 113 (272)
T COG4130 50 PAAEVKAL---AEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWPG-------------T 113 (272)
T ss_pred CHHHHHHH---HHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCCC-------------c
Confidence 34555555 666776655443 2444444322 22369999999999999999998763111 1
Q ss_pred ccchhHHhhHHHHHHHHHHHHHhcCCC
Q 020098 277 IYTAEYLRNLQPLLNRIKELGENYSKT 303 (331)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~la~~~g~s 303 (331)
.- ..+.....+.+|+.+-++||++
T Consensus 114 ~v---r~~~lv~AlkaLkpil~~~gi~ 137 (272)
T COG4130 114 AV---RREDLVEALKALKPILDEYGIT 137 (272)
T ss_pred cc---chHHHHHHHHHhhHHHHHhCcc
Confidence 11 1234556677899999999875
No 266
>PRK15108 biotin synthase; Provisional
Probab=31.52 E-value=2.9e+02 Score=26.23 Aligned_cols=113 Identities=13% Similarity=0.068 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEEec--cCCCCChHHHHHHHHHHHHcCceeEEEeec--CcHHHHHHHHHH-HHhcC
Q 020098 142 LGRQSVLAALKDSLFRLGLSSVELYQLH--WAGIWGNEGFIDGLGDAVEQGLVKAVGVSN--YSEKRLRNAYEK-LKKRG 216 (331)
Q Consensus 142 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lh--~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~--~~~~~l~~~~~~-~~~~~ 216 (331)
.+++.|.+.++. ...+|.+.+-+ ... .|.....+.+.+.++.+++.|.. +.+|+ .+.+.+.++.+. ++..+
T Consensus 76 ls~eEI~~~a~~-~~~~G~~~i~i-~~~g~~p~~~~~e~i~~~i~~ik~~~i~--v~~s~G~ls~e~l~~LkeAGld~~n 151 (345)
T PRK15108 76 MEVEQVLESARK-AKAAGSTRFCM-GAAWKNPHERDMPYLEQMVQGVKAMGLE--TCMTLGTLSESQAQRLANAGLDYYN 151 (345)
T ss_pred CCHHHHHHHHHH-HHHcCCCEEEE-EecCCCCCcchHHHHHHHHHHHHhCCCE--EEEeCCcCCHHHHHHHHHcCCCEEe
Confidence 467777776654 45678888733 333 33223456677777777776642 33444 456666666433 11111
Q ss_pred CCeeeeeeccccccc-Cc--cccchhHHHHHcCCeEEEcccCccc
Q 020098 217 IPLASNQVNYSLIYR-KP--EENGVKAACDELGITLIAYCPIAQG 258 (331)
Q Consensus 217 ~~~~~~q~~~n~~~~-~~--~~~~~l~~~~~~gi~v~a~s~l~~G 258 (331)
+.++...-.|.-+.. .. +.-+.++.+++.|+.+-+...++-|
T Consensus 152 ~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~Glg 196 (345)
T PRK15108 152 HNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLG 196 (345)
T ss_pred eccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCC
Confidence 111111111111111 11 1114777778888876655555544
No 267
>PRK10060 RNase II stability modulator; Provisional
Probab=31.44 E-value=5.2e+02 Score=26.85 Aligned_cols=116 Identities=17% Similarity=0.234 Sum_probs=74.0
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCC---CChHHHHHHHHHHHHcCceeEEEeecCc--H
Q 020098 128 EVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNYS--E 202 (331)
Q Consensus 128 ~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~---~~~~~~~~~L~~l~~~G~i~~iGvs~~~--~ 202 (331)
.+.|+..+.. ..+....+...+.+.|++.+.. ...+.+.-.+. ...+.+.+.+..|++.|- .|.+.+|. .
T Consensus 492 ~~~i~vNls~--~~l~~~~~~~~l~~~l~~~~~~-~~~l~lEitE~~~~~~~~~~~~~l~~L~~~G~--~ialDdfGtg~ 566 (663)
T PRK10060 492 NLRVAVNVSA--RQLADQTIFTALKQALQELNFE-YCPIDVELTESCLIENEELALSVIQQFSQLGA--QVHLDDFGTGY 566 (663)
T ss_pred CeEEEEEcCH--HHhCCCcHHHHHHHHHHHHCcC-cceEEEEECCchhhcCHHHHHHHHHHHHHCCC--EEEEECCCCch
Confidence 4555555543 2233445777888888888865 35555555443 356778899999999994 47777774 3
Q ss_pred HHHHHHHHHHHhcCCCeeeeeecccccccCcc---c----cchhHHHHHcCCeEEEccc
Q 020098 203 KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPE---E----NGVKAACDELGITLIAYCP 254 (331)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~---~----~~~l~~~~~~gi~v~a~s~ 254 (331)
..+..+.+ .+++.+-+.-+++..-.. . ..++..|+..|+.|+|-+.
T Consensus 567 ssl~~L~~------l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viAeGV 619 (663)
T PRK10060 567 SSLSQLAR------FPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGV 619 (663)
T ss_pred hhHHHHHh------CCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEEecC
Confidence 34444422 477777776655443111 1 2489999999999998544
No 268
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.22 E-value=4.2e+02 Score=25.16 Aligned_cols=91 Identities=18% Similarity=0.175 Sum_probs=58.8
Q ss_pred EEeccCCC------------CChHHHHHHHHHHHHcCc---eeEEEee--cCcHHHHHHHHHHHHhcCCCeeeeeecccc
Q 020098 166 YQLHWAGI------------WGNEGFIDGLGDAVEQGL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYSL 228 (331)
Q Consensus 166 ~~lh~p~~------------~~~~~~~~~L~~l~~~G~---i~~iGvs--~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~ 228 (331)
+.||.++. .+.+++++++.++.+.|+ ++++=+. |.+.+.++++.+.+. +.+..++-++||+
T Consensus 208 iSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~rri~ieyvLI~GvNDseeda~~La~llk--~l~~~vnlI~~N~ 285 (336)
T PRK14470 208 ISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALRGRVTLEYVMISGVNVGEEDAAALGRLLA--GIPVRLNPIAVND 285 (336)
T ss_pred EecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhCCCeEEEEEEEecccCCHHHHHHHHHHHh--cCCCeEEEeccCC
Confidence 66788665 246789999999887754 2333333 456788888877654 3456788889998
Q ss_pred cccC----ccc--cchhHHH--HHcCCeEEEcccCccc
Q 020098 229 IYRK----PEE--NGVKAAC--DELGITLIAYCPIAQG 258 (331)
Q Consensus 229 ~~~~----~~~--~~~l~~~--~~~gi~v~a~s~l~~G 258 (331)
.... .++ ..+.+.. +++||.+......+.-
T Consensus 286 ~~~~~~~p~~~~i~~f~~~l~~~~~g~~~~~R~~~G~d 323 (336)
T PRK14470 286 ATGRYRPPDEDEWNAFRDALARELPGTPVVRRYSGGQD 323 (336)
T ss_pred CCCCccCCCHHHHHHHHHHHHHccCCeEEEEECCCCCC
Confidence 5541 111 1244555 3668988887776653
No 269
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.16 E-value=4.7e+02 Score=24.88 Aligned_cols=91 Identities=13% Similarity=0.042 Sum_probs=59.3
Q ss_pred EEEeccCCC------------CChHHHHHHHHH-HHHcCc---eeEEEeec--CcHHHHHHHHHHHHhcCCCeeeeeecc
Q 020098 165 LYQLHWAGI------------WGNEGFIDGLGD-AVEQGL---VKAVGVSN--YSEKRLRNAYEKLKKRGIPLASNQVNY 226 (331)
Q Consensus 165 l~~lh~p~~------------~~~~~~~~~L~~-l~~~G~---i~~iGvs~--~~~~~l~~~~~~~~~~~~~~~~~q~~~ 226 (331)
++-||.++. ++.+++.+++.+ +.+.|+ |+++=+.+ .+.+.++++.+.++. ....++-++|
T Consensus 211 aisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~~~~~rv~iey~LI~gvNDs~eda~~La~llk~--l~~~VnLiPy 288 (342)
T PRK14454 211 AISLHAPNDELRKKMMPIANKYSIEELIEACKYYINKTNRRITFEYALVKGVNDSKEDAKELGKLLKG--MLCHVNLIPV 288 (342)
T ss_pred EEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHhCCEEEEEEEeECCCCCCHHHHHHHHHHHhc--CCceEEEEec
Confidence 577898876 234567766665 334454 45555554 467888888777653 3456777999
Q ss_pred cccccCccc-------cchhHHHHHcCCeEEEcccCcc
Q 020098 227 SLIYRKPEE-------NGVKAACDELGITLIAYCPIAQ 257 (331)
Q Consensus 227 n~~~~~~~~-------~~~l~~~~~~gi~v~a~s~l~~ 257 (331)
|++...... ..+.+..+++|+.+......+.
T Consensus 289 n~~~~~~~~~ps~e~l~~f~~~l~~~gi~v~iR~~~G~ 326 (342)
T PRK14454 289 NEVKENGFKKSSKEKIKKFKNILKKNGIETTIRREMGS 326 (342)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 987654321 1356667788999998776654
No 270
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=31.09 E-value=3.6e+02 Score=23.52 Aligned_cols=87 Identities=10% Similarity=0.172 Sum_probs=54.8
Q ss_pred hhCCCcccEEEec-cCCC--CCh----HHHHHHHHHHHH--cCceeEEEeecCcHHHHHHHHHHHHhcCCCeeeeeeccc
Q 020098 157 RLGLSSVELYQLH-WAGI--WGN----EGFIDGLGDAVE--QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (331)
Q Consensus 157 ~Lg~d~iDl~~lh-~p~~--~~~----~~~~~~L~~l~~--~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n 227 (331)
.-|.++||+=--- +|.. .+. +.+...++.+++ .+. -|.+-++.++.++.+++. +.++..+...+.
T Consensus 30 ~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~----g~~~ind~~~~~ 103 (210)
T PF00809_consen 30 EAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKA----GADIINDISGFE 103 (210)
T ss_dssp HTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHH----TSSEEEETTTTS
T ss_pred HhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHc----CcceEEeccccc
Confidence 3489999985433 3433 122 334555666664 343 388889999999999764 445443333332
Q ss_pred ccccCccccchhHHHHHcCCeEEEcccC
Q 020098 228 LIYRKPEENGVKAACDELGITLIAYCPI 255 (331)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~gi~v~a~s~l 255 (331)
. .+ ++++.+++++..++++..-
T Consensus 104 ~----~~--~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 104 D----DP--EMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp S----ST--THHHHHHHHTSEEEEESES
T ss_pred c----cc--hhhhhhhcCCCEEEEEecc
Confidence 2 12 5999999999999997766
No 271
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=30.67 E-value=1.5e+02 Score=29.41 Aligned_cols=65 Identities=17% Similarity=0.095 Sum_probs=42.4
Q ss_pred HHhhCCCcccEEEe-ccCCCCChHHHHHHHHHHHHcCceeEEEee-cCcHHHHHHHHHHHHhcCCCeeeeeecccc
Q 020098 155 LFRLGLSSVELYQL-HWAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNYSL 228 (331)
Q Consensus 155 L~~Lg~d~iDl~~l-h~p~~~~~~~~~~~L~~l~~~G~i~~iGvs-~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~ 228 (331)
...+|.|++-+++. .+|...+.+.+-+....+. ++.+||- |-+++.+.++++. ..++++|++-+.
T Consensus 273 a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~----v~~VgVfv~~~~~~i~~i~~~-----~~lD~vQLHG~e 339 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAP----LRYVGVFRNADIEDIVDIAKQ-----LSLAAVQLHGDE 339 (454)
T ss_pred HHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCC----CCEEEEEeCCCHHHHHHHHHH-----cCCCEEEeCCCC
Confidence 45578898888643 3444444444333333332 8889987 6678888887665 678999998743
No 272
>PRK05660 HemN family oxidoreductase; Provisional
Probab=30.63 E-value=2.5e+02 Score=27.03 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcccEEEec-cCCC--------CC-hHHHHHH----HHHHHHcCceeEEEeecCcH
Q 020098 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLH-WAGI--------WG-NEGFIDG----LGDAVEQGLVKAVGVSNYSE 202 (331)
Q Consensus 140 ~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh-~p~~--------~~-~~~~~~~----L~~l~~~G~i~~iGvs~~~~ 202 (331)
...+.+.+.+.++..++ ++.++|.++.+- .|.. .+ .++.|+. .+.|.+.|. ..+++|||.-
T Consensus 169 pgqt~~~~~~~l~~~~~-l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yei~~fa~ 243 (378)
T PRK05660 169 PDQSLEEALDDLRQAIA-LNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGY-QQYETSAYAK 243 (378)
T ss_pred CCCCHHHHHHHHHHHHh-cCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCC-cEeecccccC
Confidence 45788888888887665 899999998774 2321 11 2333332 345666676 4578888853
No 273
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=30.60 E-value=4.8e+02 Score=24.82 Aligned_cols=129 Identities=9% Similarity=0.022 Sum_probs=74.2
Q ss_pred chhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 020098 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (331)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~ 149 (331)
..++.++..++++.+.+.|+..|..+ | |+-+ .+ .. +-+.++..... .-.+.|+|-. ...+.+.+
T Consensus 44 ~~~~~e~~~~ii~~~~~~g~~~v~~~---G-GEPl-l~--~~-~~~il~~~~~~--g~~~~i~TNG----~ll~~~~~-- 107 (378)
T PRK05301 44 AELSTEEWIRVLREARALGALQLHFS---G-GEPL-LR--KD-LEELVAHAREL--GLYTNLITSG----VGLTEARL-- 107 (378)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEE---C-CccC-Cc--hh-HHHHHHHHHHc--CCcEEEECCC----ccCCHHHH--
Confidence 35677899999999999999888743 2 2110 00 11 11223322210 1245566654 23444433
Q ss_pred HHHHHHHhhCCCcccEEEeccCCC---------C-ChHHHHHHHHHHHHcCce--eEEEeecCcHHHHHHHHHHHHhcCC
Q 020098 150 ALKDSLFRLGLSSVELYQLHWAGI---------W-GNEGFIDGLGDAVEQGLV--KAVGVSNYSEKRLRNAYEKLKKRGI 217 (331)
Q Consensus 150 ~v~~sL~~Lg~d~iDl~~lh~p~~---------~-~~~~~~~~L~~l~~~G~i--~~iGvs~~~~~~l~~~~~~~~~~~~ 217 (331)
+.|...|+++|- +-|+..+. . ..+.++++++.|++.|.- -.+.++..+.+++.++++.+...|+
T Consensus 108 ---~~L~~~g~~~v~-iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~vv~~~N~~~i~~~~~~~~~lgv 183 (378)
T PRK05301 108 ---AALKDAGLDHIQ-LSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNAVIHRHNIDQIPRIIELAVELGA 183 (378)
T ss_pred ---HHHHHcCCCEEE-EEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEEEeecCCHHHHHHHHHHHHHcCC
Confidence 235556655432 23444322 1 257788999999998841 1233556778899999888888776
Q ss_pred C
Q 020098 218 P 218 (331)
Q Consensus 218 ~ 218 (331)
.
T Consensus 184 ~ 184 (378)
T PRK05301 184 D 184 (378)
T ss_pred C
Confidence 5
No 274
>PLN02681 proline dehydrogenase
Probab=30.59 E-value=5.5e+02 Score=25.54 Aligned_cols=171 Identities=13% Similarity=0.095 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHCCCC-eEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 020098 75 KAAKAAFDTSLDNGIT-FFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (331)
Q Consensus 75 ~~~~~~l~~A~~~Gvn-~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~ 153 (331)
+...+++++|.+.|++ +||-=+.|-...- ..+.-+..+.+.....+.-|+++-..- -..+.+.+...++.
T Consensus 220 ~rl~~i~~~A~~~gv~l~IDAE~s~~q~ai------d~l~~~l~~~yN~~~~~~~V~~T~QaY---Lk~t~~~l~~~l~~ 290 (455)
T PLN02681 220 ERLQKLCERAAQLGVPLLIDAEYTSLQPAI------DYITYDLAREFNKGKDRPIVYGTYQAY---LKDARERLRLDLER 290 (455)
T ss_pred HHHHHHHHHHHHCCCEEEEeCCcccchhHH------HHHHHHHHHHhccccCCCcEEEEEeCc---cccCHHHHHHHHHH
Confidence 3567788999999999 6786554433211 333444444443110024466666552 23457777777776
Q ss_pred HHHh---hCC-----CcccE-----EEeccCCC-CC-h----HHHHHHHHHHHH---cCceeEEEeecCcHHHHHHHHHH
Q 020098 154 SLFR---LGL-----SSVEL-----YQLHWAGI-WG-N----EGFIDGLGDAVE---QGLVKAVGVSNYSEKRLRNAYEK 211 (331)
Q Consensus 154 sL~~---Lg~-----d~iDl-----~~lh~p~~-~~-~----~~~~~~L~~l~~---~G~i~~iGvs~~~~~~l~~~~~~ 211 (331)
+.+. +|+ -|+|- -...||++ .+ . .-.-..++.+.+ .+.+ ++.+.+|+.+.+..+.+.
T Consensus 291 a~~~g~~~gvKLVRGAY~e~E~~~a~~~g~~~pi~~~k~~Td~~Y~~~~~~lL~~~~~~~~-~~~vATHN~~Si~~a~~~ 369 (455)
T PLN02681 291 SEREGVPLGAKLVRGAYLSLERRLAASLGVPSPVHDTIQDTHACYNRCAEFLLEKASNGDG-EVMLATHNVESGELAAAK 369 (455)
T ss_pred HHhcCCCcceEEEecCCcchhhhhHHhcCCCCCCcCCHHHHHHHHHHHHHHHhhhhccCCe-eeEEecCCHHHHHHHHHH
Confidence 6543 222 23332 11223333 11 1 222333444444 3444 788999999999999888
Q ss_pred HHhcCCCeeeeeecccccccCccccchhHHHHHcCCeEEEcccCcc
Q 020098 212 LKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (331)
Q Consensus 212 ~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~ 257 (331)
....++++.-.+++|-.+..=.+ .+.....+.|-.|.-|.|++.
T Consensus 370 ~~~~gi~~~~~~veF~qL~GM~d--~ls~~L~~~G~~V~kYvPyG~ 413 (455)
T PLN02681 370 MNELGLHKGDPRVQFAQLLGMSD--NLSFGLGNAGFRVSKYLPYGP 413 (455)
T ss_pred HHHcCCCCCCCCEEEeccCCCCH--HHHHHHHhcCCCEEEEeeccC
Confidence 77777654433334443333222 356666777988999999885
No 275
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=30.57 E-value=1.3e+02 Score=29.05 Aligned_cols=72 Identities=14% Similarity=0.189 Sum_probs=43.3
Q ss_pred hHHHHHHHHHhccCCCCCCcEEEEecCCC--------CCCCCCHH----HHHHHHHHHHHhhCCCcccEEEeccCCC--C
Q 020098 109 SETLLGRFIKERKQRDPEVEVTVATKFAA--------LPWRLGRQ----SVLAALKDSLFRLGLSSVELYQLHWAGI--W 174 (331)
Q Consensus 109 sE~~iG~~l~~~~~~~~R~~~~i~tK~~~--------~~~~~~~~----~i~~~v~~sL~~Lg~d~iDl~~lh~p~~--~ 174 (331)
.+..+++.+++.. ..=+||-||+.. .+..++.+ .|++.+.+.|++-|+....+|++.+.+. +
T Consensus 129 ndv~La~~i~~~g----K~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~y 204 (376)
T PF05049_consen 129 NDVQLAKEIQRMG----KKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKY 204 (376)
T ss_dssp HHHHHHHHHHHTT-----EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTST
T ss_pred hhHHHHHHHHHcC----CcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccC
Confidence 4888999999886 467889999853 23345544 4666677888888999999999987665 4
Q ss_pred ChHHHHHHHH
Q 020098 175 GNEGFIDGLG 184 (331)
Q Consensus 175 ~~~~~~~~L~ 184 (331)
+...+.++|+
T Consensus 205 DFp~L~~tL~ 214 (376)
T PF05049_consen 205 DFPKLEETLE 214 (376)
T ss_dssp THHHHHHHHH
T ss_pred ChHHHHHHHH
Confidence 5444444433
No 276
>TIGR00035 asp_race aspartate racemase.
Probab=30.54 E-value=2.1e+02 Score=25.21 Aligned_cols=62 Identities=6% Similarity=-0.084 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHhhCCCcccEEEeccCCCC-------------ChHHHHHHHHHHHHcCceeEEEeecCcHHHH
Q 020098 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-------------GNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (331)
Q Consensus 143 ~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~-------------~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l 205 (331)
+.+.+++=++..-.+.+-+|++++.+++|+.. ....+.+.++.|.+.| +.+|-+++++...+
T Consensus 15 t~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~~ 89 (229)
T TIGR00035 15 TAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHKF 89 (229)
T ss_pred HHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHHH
Confidence 45556666666667788899999999998641 1234566677776655 79999999987664
No 277
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=30.39 E-value=3.3e+02 Score=25.42 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=16.6
Q ss_pred HHHHHHHHcCc-e-eEEEeecCcHHHH
Q 020098 181 DGLGDAVEQGL-V-KAVGVSNYSEKRL 205 (331)
Q Consensus 181 ~~L~~l~~~G~-i-~~iGvs~~~~~~l 205 (331)
+.|+.|++.|. + -.||+=+++.+.+
T Consensus 118 e~L~~l~~aG~~~~v~iG~ES~~d~~L 144 (313)
T TIGR01210 118 EKLEELRKIGVNVEVAVGLETANDRIR 144 (313)
T ss_pred HHHHHHHHcCCCEEEEEecCcCCHHHH
Confidence 45566777786 3 5788877766555
No 278
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=30.36 E-value=76 Score=19.30 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHH
Q 020098 289 LLNRIKELGENYSKTSTQNSPC 310 (331)
Q Consensus 289 ~~~~l~~la~~~g~s~~qval~ 310 (331)
..+.|.++|++.|+|.+++.-.
T Consensus 10 ~~~~l~~~a~~~g~s~s~~ir~ 31 (39)
T PF01402_consen 10 LYERLDELAKELGRSRSELIRE 31 (39)
T ss_dssp HHHHHHHHHHHHTSSHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHH
Confidence 4568999999999998887543
No 279
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=30.34 E-value=4.2e+02 Score=24.10 Aligned_cols=109 Identities=18% Similarity=0.190 Sum_probs=54.0
Q ss_pred HHHHHHHHC--CCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH---
Q 020098 79 AAFDTSLDN--GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD--- 153 (331)
Q Consensus 79 ~~l~~A~~~--Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~--- 153 (331)
+++++|++. |...|.....-. .+. + .+...++++. -.+++..--.. ....+.+...+.+++
T Consensus 80 ~v~eaaL~~~~G~~iINsIs~~~-~~~------~-~~~~l~~~~g-----~~vv~m~~~~~-g~P~t~~~~~~~l~~~v~ 145 (261)
T PRK07535 80 AAIEAGLKVAKGPPLINSVSAEG-EKL------E-VVLPLVKKYN-----APVVALTMDDT-GIPKDAEDRLAVAKELVE 145 (261)
T ss_pred HHHHHHHHhCCCCCEEEeCCCCC-ccC------H-HHHHHHHHhC-----CCEEEEecCCC-CCCCCHHHHHHHHHHHHH
Confidence 356667776 777766443221 111 3 3345566653 35555442100 011233322333333
Q ss_pred HHHhhCCC----cccEEEecc-CCCCChHHHHHHHHHHHHc--CceeEEEeecCc
Q 020098 154 SLFRLGLS----SVELYQLHW-AGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNYS 201 (331)
Q Consensus 154 sL~~Lg~d----~iDl~~lh~-p~~~~~~~~~~~L~~l~~~--G~i~~iGvs~~~ 201 (331)
.+...|++ ++|-.+.-. .+.....++++.++.+++. |.=-.+|+||-+
T Consensus 146 ~a~~~GI~~~~IilDPgi~~~~~~~~~~~~~l~~i~~l~~~~pg~p~l~G~Sn~S 200 (261)
T PRK07535 146 KADEYGIPPEDIYIDPLVLPLSAAQDAGPEVLETIRRIKELYPKVHTTCGLSNIS 200 (261)
T ss_pred HHHHcCCCHhHEEEeCCCCcccCChHHHHHHHHHHHHHHHhCCCCCEEEEeCCCc
Confidence 33456775 333332211 1111245678888888887 777788999865
No 280
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=30.17 E-value=1.8e+02 Score=24.87 Aligned_cols=85 Identities=26% Similarity=0.316 Sum_probs=54.8
Q ss_pred HHHhhCCCc----ccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecCcHHHHHHHHHHHHhcCCCeeeeeeccccc
Q 020098 154 SLFRLGLSS----VELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLI 229 (331)
Q Consensus 154 sL~~Lg~d~----iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~ 229 (331)
.|++.|+.- +|==++-|.++...+++.+.+++++++|. +-+=+||.+...+..+.+ ..+++|. .---
T Consensus 22 ~L~~~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi-~v~vvSNn~e~RV~~~~~---~l~v~fi--~~A~--- 92 (175)
T COG2179 22 ILKAHGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEAGI-KVVVVSNNKESRVARAAE---KLGVPFI--YRAK--- 92 (175)
T ss_pred HHHHcCCcEEEEeccCceecccCCCCCHHHHHHHHHHHhcCC-EEEEEeCCCHHHHHhhhh---hcCCcee--eccc---
Confidence 456666432 45566677776778999999999999995 446689999888888844 3333332 2222
Q ss_pred ccCccccchhHHHHHcCCeE
Q 020098 230 YRKPEENGVKAACDELGITL 249 (331)
Q Consensus 230 ~~~~~~~~~l~~~~~~gi~v 249 (331)
.+....+-.++++.++..
T Consensus 93 --KP~~~~fr~Al~~m~l~~ 110 (175)
T COG2179 93 --KPFGRAFRRALKEMNLPP 110 (175)
T ss_pred --CccHHHHHHHHHHcCCCh
Confidence 222235777777776653
No 281
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=30.03 E-value=4.5e+02 Score=24.27 Aligned_cols=143 Identities=17% Similarity=0.163 Sum_probs=81.9
Q ss_pred HHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH-HHH
Q 020098 78 KAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD-SLF 156 (331)
Q Consensus 78 ~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~-sL~ 156 (331)
.++-....+.|+|..|........ .+.+|...-+.......+.+.++..++. .-+
T Consensus 15 A~Vt~~La~~g~NI~d~sq~~~~~------------------------~~~F~mr~~v~~~~~~~~~~~l~~~l~~~~~~ 70 (280)
T TIGR00655 15 AAISTFIAKHGANIISNDQHTDPE------------------------TGRFFMRVEFQLEGFRLEESSLLAAFKSALAE 70 (280)
T ss_pred HHHHHHHHHCCCCEEeeeEEEcCC------------------------CCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 334445569999999976654321 1344443333221123568888888888 888
Q ss_pred hhCCCcccEEEeccCCCC--------ChHHHHHHHHHHHHcCce--eEEE-eecCcHHHHHHHHHHHHhcCCCeeeeeec
Q 020098 157 RLGLSSVELYQLHWAGIW--------GNEGFIDGLGDAVEQGLV--KAVG-VSNYSEKRLRNAYEKLKKRGIPLASNQVN 225 (331)
Q Consensus 157 ~Lg~d~iDl~~lh~p~~~--------~~~~~~~~L~~l~~~G~i--~~iG-vs~~~~~~l~~~~~~~~~~~~~~~~~q~~ 225 (331)
.+|++ +.+|+.+.. ....-+++|.+..+.|.+ .-.. +||+. .+..+ +++.++|+......
T Consensus 71 ~~~l~----i~l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~visn~~--~~~~~---A~~~gIp~~~~~~~ 141 (280)
T TIGR00655 71 KFEMT----WELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVISNHE--DLRSL---VERFGIPFHYIPAT 141 (280)
T ss_pred HhCCE----EEEecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEEcCh--hHHHH---HHHhCCCEEEcCCC
Confidence 88865 466665431 234456777777777763 3233 46663 22222 56667766544332
Q ss_pred ccccccCccccchhHHHHHcCCeEEEcccC
Q 020098 226 YSLIYRKPEENGVKAACDELGITLIAYCPI 255 (331)
Q Consensus 226 ~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l 255 (331)
. .++...+..+++..++.++-++.-..+
T Consensus 142 ~--~~~~~~e~~~~~~l~~~~~Dlivlagy 169 (280)
T TIGR00655 142 K--DNRVEHEKRQLELLKQYQVDLVVLAKY 169 (280)
T ss_pred C--cchhhhHHHHHHHHHHhCCCEEEEeCc
Confidence 2 233333335888899988777664433
No 282
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=29.94 E-value=63 Score=25.38 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHCCCCeEECCcCcCC
Q 020098 73 KMKAAKAAFDTSLDNGITFFDTAEVYGS 100 (331)
Q Consensus 73 ~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~ 100 (331)
+.+.+.+....+++.|++.||.+..|..
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R~ 102 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFRL 102 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHhC
Confidence 3477888899999999999999998854
No 283
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=29.91 E-value=4.3e+02 Score=24.04 Aligned_cols=33 Identities=6% Similarity=0.215 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCC
Q 020098 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFG 105 (331)
Q Consensus 73 ~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~ 105 (331)
+.+...+++....+.|+++++-.=-|.+..+||
T Consensus 24 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDG 56 (258)
T PRK13111 24 DLETSLEIIKALVEAGADIIELGIPFSDPVADG 56 (258)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCcccC
Confidence 458899999999999999999888887766655
No 284
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=29.90 E-value=2e+02 Score=21.87 Aligned_cols=57 Identities=18% Similarity=0.101 Sum_probs=31.5
Q ss_pred HHhhCCCcccEEEeccCCCCChHHHHHHHHHHH---HcCceeEEEeecCcHHHHHHHHHH
Q 020098 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAV---EQGLVKAVGVSNYSEKRLRNAYEK 211 (331)
Q Consensus 155 L~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~---~~G~i~~iGvs~~~~~~l~~~~~~ 211 (331)
|..|.-.++=|++........-...+..|.++. ++..+..|||+..+.+.+.++.+.
T Consensus 20 l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~ 79 (124)
T PF00578_consen 20 LSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEE 79 (124)
T ss_dssp GGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHH
T ss_pred HHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhh
Confidence 445533343333333322222233444444444 345689999999998877777543
No 285
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=29.83 E-value=4.6e+02 Score=26.16 Aligned_cols=104 Identities=18% Similarity=0.132 Sum_probs=55.3
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCC-----hHHHHHHHH
Q 020098 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (331)
Q Consensus 110 E~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~-----~~~~~~~L~ 184 (331)
|+-+-++|....+..+.+-++|.|=+-..--.-+-+.+.+.++ ++++ +.++.++-+.... ...++++|-
T Consensus 104 ~~kL~~~I~ei~~~~~P~~I~V~tTC~~~lIGdDi~~v~~~~~---~~~~---~pvi~v~t~Gf~g~~~~G~~~a~~al~ 177 (475)
T PRK14478 104 EKKLFKAIDEIIEKYAPPAVFVYQTCVVALIGDDIDAVCKRAA---EKFG---IPVIPVNSPGFVGNKNLGNKLAGEALL 177 (475)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCChHHHhccCHHHHHHHHH---HhhC---CCEEEEECCCcccchhhhHHHHHHHHH
Confidence 8888888877654433566777777632111122333333322 3333 6788888776522 233344433
Q ss_pred H-HH--------HcCceeEEEeecCcHHHHHHHHHHHHhcCCCee
Q 020098 185 D-AV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (331)
Q Consensus 185 ~-l~--------~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~ 220 (331)
+ +. ..+.|.-||-.++.. .+.++.+.++..|+.+.
T Consensus 178 ~~l~~~~~~~~~~~~~VNiiG~~~~~g-d~~elk~lL~~~Gl~v~ 221 (475)
T PRK14478 178 DHVIGTVEPEDTTPYDINILGEYNLAG-ELWQVKPLLDRLGIRVV 221 (475)
T ss_pred HHHhccCCccCCCCCeEEEEeCCCCCC-CHHHHHHHHHHcCCeEE
Confidence 2 33 235688899666542 33444444566666544
No 286
>PRK10551 phage resistance protein; Provisional
Probab=29.70 E-value=2.6e+02 Score=28.16 Aligned_cols=117 Identities=14% Similarity=0.093 Sum_probs=69.2
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCC--CChHHHHHHHHHHHHcCceeEEEeecCcH--H
Q 020098 128 EVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSE--K 203 (331)
Q Consensus 128 ~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~--~~~~~~~~~L~~l~~~G~i~~iGvs~~~~--~ 203 (331)
+..|+-.+.. .....+.+...+.+.++.++.+.. -+.+.-.+. ....+..+.++.|++.|- .|.+.+|.. .
T Consensus 349 ~~~lsINis~--~~l~~~~f~~~l~~~l~~~~~~~~-~LvlEItE~~~~~~~~~~~~l~~Lr~~G~--~ialDDFGtg~s 423 (518)
T PRK10551 349 GAKLGINISP--AHLHSDSFKADVQRLLASLPADHF-QIVLEITERDMVQEEEATKLFAWLHSQGI--EIAIDDFGTGHS 423 (518)
T ss_pred CcEEEEEeCH--HHHCCchHHHHHHHHHHhCCCCcc-eEEEEEechHhcCCHHHHHHHHHHHHCCC--EEEEECCCCCch
Confidence 4555555533 233445567778888888887643 333333332 233556788999999994 366666632 2
Q ss_pred HHHHHHHHHHhcCCCeeeeeecccccccCccc-------cchhHHHHHcCCeEEEcccC
Q 020098 204 RLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-------NGVKAACDELGITLIAYCPI 255 (331)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~-------~~~l~~~~~~gi~v~a~s~l 255 (331)
.+..+.+ .+++.+-+.-+....-... ..+++.|++.|+.+++-+.-
T Consensus 424 sl~~L~~------l~vD~lKID~~fv~~i~~~~~~~~il~~ii~la~~lgi~vVAEGVE 476 (518)
T PRK10551 424 ALIYLER------FTLDYLKIDRGFIQAIGTETVTSPVLDAVLTLAKRLNMLTVAEGVE 476 (518)
T ss_pred hHHHHHh------CCCCEEEECHHHHhhhccChHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 2333321 4677766665544432111 14899999999999985443
No 287
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=29.60 E-value=2.4e+02 Score=22.33 Aligned_cols=60 Identities=8% Similarity=0.072 Sum_probs=44.0
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCC------cccEEEeccCCC--CChHHHHHHHHHHH
Q 020098 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS------SVELYQLHWAGI--WGNEGFIDGLGDAV 187 (331)
Q Consensus 126 R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d------~iDl~~lh~p~~--~~~~~~~~~L~~l~ 187 (331)
|=.+.|+-|++. ....+..+++.+.++++....+ -.|++++-.+.. .+..++-+.|+.|.
T Consensus 47 RlG~sVSKKv~~--kAV~RNRiKR~lRE~fR~~~~~~~l~~~g~DiVviaR~~~~~~~~~~l~~~l~~l~ 114 (118)
T PRK01492 47 FLGIKVSRKLNK--KAVVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGFEEINFSHLNYELSKII 114 (118)
T ss_pred eEEEEEecccCC--chhhHHHHHHHHHHHHHHhCcccccCCCCceEEEEECCCcccCCHHHHHHHHHHHH
Confidence 668899999653 3567899999999999887542 479999988765 44566666666553
No 288
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=29.38 E-value=5e+02 Score=25.15 Aligned_cols=73 Identities=12% Similarity=0.099 Sum_probs=37.1
Q ss_pred HHHHHHcCceeEEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHHHHHcCCeEEEcccCcccc
Q 020098 183 LGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGA 259 (331)
Q Consensus 183 L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~ 259 (331)
++.+.+.+.++.+-+...+.+.+++.++ .+.+..++..+-|+.-......++.++|+++|+.++.-.+++.+.
T Consensus 116 ~~~~~~~~g~~v~~v~~~d~~~l~~~i~----~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~ 188 (405)
T PRK08776 116 FNALAKKGHFALITADLTDPRSLADALA----QSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPA 188 (405)
T ss_pred HHHHHHhcCcEEEEECCCCHHHHHHhcC----cCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcccc
Confidence 3333333334444444344555544421 123444555555554443333357777777787777766665443
No 289
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.27 E-value=1.8e+02 Score=30.59 Aligned_cols=72 Identities=10% Similarity=0.129 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHc--CceeEEEeecCcHHHHHHHHHHHHh
Q 020098 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNYSEKRLRNAYEKLKK 214 (331)
Q Consensus 142 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~--G~i~~iGvs~~~~~~l~~~~~~~~~ 214 (331)
.+.+.+++-++.....-.....-+++|+..+.. ....+++|.+..++ +.+.+|.+++.....+..+.+.|..
T Consensus 104 ~gVDdIReLie~~~~~P~~gr~KViIIDEah~L-s~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~ 177 (700)
T PRK12323 104 RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML-TNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQ 177 (700)
T ss_pred CCHHHHHHHHHHHHhchhcCCceEEEEEChHhc-CHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHh
Confidence 445666666655544333345678999888753 44567777777777 8899999999876666666666543
No 290
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=29.16 E-value=57 Score=33.70 Aligned_cols=39 Identities=15% Similarity=0.196 Sum_probs=34.5
Q ss_pred HHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCcee
Q 020098 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK 193 (331)
Q Consensus 153 ~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~ 193 (331)
-.|+.||++ |++-+++.|+.+.+.+..+|+.|+..|-+.
T Consensus 413 L~Lkalgi~--d~l~F~f~d~P~~~~l~~AL~~L~~lgald 451 (674)
T KOG0922|consen 413 LQLKALGIN--DPLRFPFIDPPPPEALEEALEELYSLGALD 451 (674)
T ss_pred HHHHhcCCC--CcccCCCCCCCChHHHHHHHHHHHhcCccc
Confidence 348889998 999999999988999999999999988765
No 291
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=29.16 E-value=4.3e+02 Score=23.86 Aligned_cols=26 Identities=4% Similarity=-0.083 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECCcC
Q 020098 72 RKMKAAKAAFDTSLDNGITFFDTAEV 97 (331)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gvn~~Dta~~ 97 (331)
.+.++..++++.-.+.||..|+....
T Consensus 17 ~~~~~k~~i~~~L~~~Gv~~iEvg~~ 42 (268)
T cd07940 17 LTPEEKLEIARQLDELGVDVIEAGFP 42 (268)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 45688888999999999999998643
No 292
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=29.13 E-value=2e+02 Score=25.47 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=25.9
Q ss_pred ChHHHHHHHHHHHHcCceeEEEeecCcHHHHHHHHHHHH
Q 020098 175 GNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLK 213 (331)
Q Consensus 175 ~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~ 213 (331)
...++.+.|+.|+++|.--.| +||.+.+.+..+++...
T Consensus 100 ~~pg~~e~L~~L~~~g~~l~I-vT~~~~~~~~~~l~~~g 137 (253)
T TIGR01422 100 PIPGVIEVIAYLRARGIKIGS-TTGYTREMMDVVAPEAA 137 (253)
T ss_pred cCCCHHHHHHHHHHCCCeEEE-ECCCcHHHHHHHHHHHH
Confidence 456778888999999854444 66767677777655443
No 293
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=28.72 E-value=4e+02 Score=23.28 Aligned_cols=121 Identities=10% Similarity=0.028 Sum_probs=60.9
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 020098 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (331)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~ 150 (331)
..++++-.+++..+++.|+.++|.--... ++.+...+.... .+.+++++-... ....+.+.+...
T Consensus 71 ~~~~~~~~~ll~~~~~~~~d~iDiE~~~~----------~~~~~~~~~~~~---~~~~iI~S~H~f--~~tp~~~~l~~~ 135 (224)
T PF01487_consen 71 QGSEEEYLELLERAIRLGPDYIDIELDLF----------PDDLKSRLAARK---GGTKIILSYHDF--EKTPSWEELIEL 135 (224)
T ss_dssp SS-HHHHHHHHHHHHHHTSSEEEEEGGCC----------HHHHHHHHHHHH---TTSEEEEEEEES--S---THHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEcccc----------hhHHHHHHHHhh---CCCeEEEEeccC--CCCCCHHHHHHH
Confidence 35668899999999999999999754422 222222222222 146777776632 123344445554
Q ss_pred HHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecCcHHHHHHH
Q 020098 151 LKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNA 208 (331)
Q Consensus 151 v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~ 208 (331)
+++.. .+|.|.+=+.....-. .+...+++.+.++++.-.+..|+++.=..-.+.++
T Consensus 136 ~~~~~-~~gadivKia~~~~~~-~D~~~l~~~~~~~~~~~~~p~i~~~MG~~G~~SRi 191 (224)
T PF01487_consen 136 LEEMQ-ELGADIVKIAVMANSP-EDVLRLLRFTKEFREEPDIPVIAISMGELGRISRI 191 (224)
T ss_dssp HHHHH-HTT-SEEEEEEE-SSH-HHHHHHHHHHHHHHHHTSSEEEEEEETGGGHHHHH
T ss_pred HHHHH-hcCCCeEEEEeccCCH-HHHHHHHHHHHHHhhccCCcEEEEEcCCCchhHHH
Confidence 44443 6666554444433211 23444555666666543344444444333334344
No 294
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=28.61 E-value=2.4e+02 Score=30.68 Aligned_cols=69 Identities=14% Similarity=0.129 Sum_probs=53.8
Q ss_pred CCCCHHHHHHHHHHHHHhhC--------------------------CCcccEEEeccCCC-C---ChHHHHHHHHHHHHc
Q 020098 140 WRLGRQSVLAALKDSLFRLG--------------------------LSSVELYQLHWAGI-W---GNEGFIDGLGDAVEQ 189 (331)
Q Consensus 140 ~~~~~~~i~~~v~~sL~~Lg--------------------------~d~iDl~~lh~p~~-~---~~~~~~~~L~~l~~~ 189 (331)
.+..+..+.+.++..|+.++ +....++++..|.. . .-..+|+.+.++++.
T Consensus 668 rG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~ 747 (885)
T KOG0059|consen 668 RGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKN 747 (885)
T ss_pred cCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 34566778888888888776 34567888888765 2 246899999999999
Q ss_pred CceeEEEeecCcHHHHHHHHH
Q 020098 190 GLVKAVGVSNYSEKRLRNAYE 210 (331)
Q Consensus 190 G~i~~iGvs~~~~~~l~~~~~ 210 (331)
|+ +|=+.+|+-++.+.+..
T Consensus 748 g~--aiiLTSHsMeE~EaLCt 766 (885)
T KOG0059|consen 748 GK--AIILTSHSMEEAEALCT 766 (885)
T ss_pred CC--EEEEEcCCHHHHHHHhh
Confidence 98 78899999888888843
No 295
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=28.55 E-value=4.6e+02 Score=23.96 Aligned_cols=31 Identities=16% Similarity=0.093 Sum_probs=23.5
Q ss_pred CchhhHHHHHHHHHHHHHCCCCeEECCcCcC
Q 020098 69 WDDRKMKAAKAAFDTSLDNGITFFDTAEVYG 99 (331)
Q Consensus 69 ~~~~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg 99 (331)
.+.++.+...+.++..++.|++-+=..-..|
T Consensus 16 dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~G 46 (292)
T PRK03170 16 DGSVDFAALRKLVDYLIANGTDGLVVVGTTG 46 (292)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECCcCC
Confidence 3568889999999999999999665433333
No 296
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=28.50 E-value=1e+02 Score=30.01 Aligned_cols=68 Identities=12% Similarity=-0.000 Sum_probs=45.9
Q ss_pred HHHHHHHHHcCc--e-eEEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHHHHHcCCeEEEc
Q 020098 180 IDGLGDAVEQGL--V-KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (331)
Q Consensus 180 ~~~L~~l~~~G~--i-~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~ 252 (331)
++.+.+|++.-. | -..|-+.++.+.+.++++. -..+++|+...-.-.-.+-..+.+.|+.+|+.+..+
T Consensus 248 ~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~-----~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 248 YWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEM-----GCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred HHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHc-----CCCCEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 667777777644 2 2236777788888888664 457888877665432222225889999999998775
No 297
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=28.48 E-value=2.4e+02 Score=26.57 Aligned_cols=90 Identities=20% Similarity=0.185 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHhhCCCcccEEEecc--CCCCChHHHHHHHHHHHHcCceeEEEee--cCcHHHHHHHHHHHHhcCCCe
Q 020098 144 RQSVLAALKDSLFRLGLSSVELYQLHW--AGIWGNEGFIDGLGDAVEQGLVKAVGVS--NYSEKRLRNAYEKLKKRGIPL 219 (331)
Q Consensus 144 ~~~i~~~v~~sL~~Lg~d~iDl~~lh~--p~~~~~~~~~~~L~~l~~~G~i~~iGvs--~~~~~~l~~~~~~~~~~~~~~ 219 (331)
.+.+++..+..-++||...+.+.+-.. +..+-...+-+.|++|.++| ++.|=|. +|..+.++-+ ...
T Consensus 206 ~~~~~~t~~~i~~~l~~~~~~~~fQS~~g~~~WL~P~~~~~l~~l~~~G-~~~V~v~p~gFv~D~lETl--------~ei 276 (316)
T PF00762_consen 206 PAQCEETARLIAERLGLPEWRLAFQSRFGPGEWLGPSTEDVLEELAKEG-VKRVVVVPPGFVSDCLETL--------YEI 276 (316)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEEEES-SSSS-BSSSBHHHHHHHHHHCT--SEEEEEETT-SSSSHHHH--------CCC
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCccccHHHHHHHHHhcC-CCeEEEECCccccccHhHH--------HHH
Confidence 566788888888889887655544432 22344556788899999999 4444443 3334444444 222
Q ss_pred eeeeecccccccCccccchhHHHHHcCCeEEEcccCcc
Q 020098 220 ASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (331)
Q Consensus 220 ~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~ 257 (331)
++ +.-+.++++|+.-+.+-|--+
T Consensus 277 di---------------e~re~~~~~G~~~~~~ip~lN 299 (316)
T PF00762_consen 277 DI---------------EYRELAEEAGGEEFVRIPCLN 299 (316)
T ss_dssp CC---------------HHHHHHHHHTCCEEEE---ST
T ss_pred HH---------------HHHHHHHHcCCceEEEeCCCC
Confidence 21 478889999997777666654
No 298
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=28.38 E-value=3.2e+02 Score=22.16 Aligned_cols=99 Identities=10% Similarity=0.060 Sum_probs=54.5
Q ss_pred ceeEEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccCc--cc-----cchhHHHHH--cCCeEEEcccCcccccc
Q 020098 191 LVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP--EE-----NGVKAACDE--LGITLIAYCPIAQGALT 261 (331)
Q Consensus 191 ~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~--~~-----~~~l~~~~~--~gi~v~a~s~l~~G~L~ 261 (331)
.+...|+++.+...+.+-++..........++++-.|=..... +. ..+++.+++ .++.|+..++.-.+-
T Consensus 23 ~v~n~g~~G~~~~~~~~~l~~~~~~~pd~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~~~vi~~~~~p~~~-- 100 (169)
T cd01828 23 KVANRGISGDTTRGLLARLDEDVALQPKAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKHFPNIKIVVQSILPVGE-- 100 (169)
T ss_pred ceEecCcccccHHHHHHHHHHHhccCCCEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEecCCcCc--
Confidence 3677888887766554433322122234555666666543321 10 147888888 788887766554320
Q ss_pred CCCCCCCCCCCCCCCccchhHHhhHHHHHHHHHHHHHhcCCCHHHH
Q 020098 262 GKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQN 307 (331)
Q Consensus 262 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~qv 307 (331)
..........+..+.++++|+++++....+
T Consensus 101 ----------------~~~~~~~~~~~~n~~l~~~a~~~~~~~id~ 130 (169)
T cd01828 101 ----------------LKSIPNEQIEELNRQLAQLAQQEGVTFLDL 130 (169)
T ss_pred ----------------cCcCCHHHHHHHHHHHHHHHHHCCCEEEec
Confidence 001112334555567889999988754433
No 299
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=28.19 E-value=4.6e+02 Score=23.81 Aligned_cols=107 Identities=14% Similarity=0.096 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcccEEEeccCC-C---CChHHHHHHHHHHHHc--C-ceeEEEeecCcHHHHHHHHHHHH
Q 020098 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAG-I---WGNEGFIDGLGDAVEQ--G-LVKAVGVSNYSEKRLRNAYEKLK 213 (331)
Q Consensus 141 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~-~---~~~~~~~~~L~~l~~~--G-~i~~iGvs~~~~~~l~~~~~~~~ 213 (331)
..+.+.+++.++..++ .| +|-+++-... . ...+|-.+.++...+. | ..-.+|++..+.+...++.+.+.
T Consensus 17 ~iD~~~~~~~i~~l~~-~G---v~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~ 92 (284)
T cd00950 17 SVDFDALERLIEFQIE-NG---TDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAE 92 (284)
T ss_pred CcCHHHHHHHHHHHHH-cC---CCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHH
Confidence 4567777777776554 44 5555554322 2 3445544444444433 3 33568888888877777777778
Q ss_pred hcCCCeeeeeecccccccCccccchhHHH----HHcCCeEEEccc
Q 020098 214 KRGIPLASNQVNYSLIYRKPEENGVKAAC----DELGITLIAYCP 254 (331)
Q Consensus 214 ~~~~~~~~~q~~~n~~~~~~~~~~~l~~~----~~~gi~v~a~s~ 254 (331)
..|..-.++..++.... ..+ +++++. ...++.++.|..
T Consensus 93 ~~G~d~v~~~~P~~~~~-~~~--~l~~~~~~ia~~~~~pi~lYn~ 134 (284)
T cd00950 93 KAGADAALVVTPYYNKP-SQE--GLYAHFKAIAEATDLPVILYNV 134 (284)
T ss_pred HcCCCEEEEcccccCCC-CHH--HHHHHHHHHHhcCCCCEEEEEC
Confidence 87776555555543211 111 355544 345788887754
No 300
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=28.10 E-value=5.4e+02 Score=24.60 Aligned_cols=25 Identities=4% Similarity=-0.005 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECCc
Q 020098 72 RKMKAAKAAFDTSLDNGITFFDTAE 96 (331)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gvn~~Dta~ 96 (331)
.+.++..++++.--+.||..|+...
T Consensus 19 ~s~~~k~~ia~~L~~~Gv~~IEvG~ 43 (363)
T TIGR02090 19 LTVEQKVEIARKLDELGVDVIEAGF 43 (363)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 4457888888888899999999753
No 301
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=28.04 E-value=3.6e+02 Score=26.62 Aligned_cols=28 Identities=11% Similarity=0.146 Sum_probs=18.4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcccEEEe
Q 020098 140 WRLGRQSVLAALKDSLFRLGLSSVELYQL 168 (331)
Q Consensus 140 ~~~~~~~i~~~v~~sL~~Lg~d~iDl~~l 168 (331)
...+.+.+.+.++..++ ++.++|.++.+
T Consensus 213 Pgqt~e~~~~tl~~~~~-l~~~~is~y~L 240 (455)
T TIGR00538 213 PKQTKESFAKTLEKVAE-LNPDRLAVFNY 240 (455)
T ss_pred CCCCHHHHHHHHHHHHh-cCCCEEEEecC
Confidence 34667777777765544 77777777765
No 302
>PRK00077 eno enolase; Provisional
Probab=27.95 E-value=2.8e+02 Score=27.20 Aligned_cols=96 Identities=17% Similarity=0.085 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcC--ceeEEEeec--CcHHHHHHHHHHHHhcCCC
Q 020098 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG--LVKAVGVSN--YSEKRLRNAYEKLKKRGIP 218 (331)
Q Consensus 143 ~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G--~i~~iGvs~--~~~~~l~~~~~~~~~~~~~ 218 (331)
+++.....+.+.++. .++++|..|-+... |+.+.+|.++- +|.-+|=-. .+++.+.++++. -.
T Consensus 262 s~~e~~~~~~~l~e~-----y~i~~iEdPl~~~D---~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~-----~a 328 (425)
T PRK00077 262 TSEEMIDYLAELVDK-----YPIVSIEDGLDEND---WEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEK-----GA 328 (425)
T ss_pred CHHHHHHHHHHHHhh-----CCcEEEEcCCCCcc---HHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHh-----CC
Confidence 444444444444443 46778887754322 55666666553 455444332 357888888654 34
Q ss_pred eeeeeecccccccCccccchhHHHHHcCCeEEE
Q 020098 219 LASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (331)
Q Consensus 219 ~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a 251 (331)
.+++|+..+-.-.-.+-..+...|+.+|+.++.
T Consensus 329 ~d~v~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 329 ANSILIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred CCEEEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 677777766543322222588999999998665
No 303
>TIGR03586 PseI pseudaminic acid synthase.
Probab=27.93 E-value=5.3e+02 Score=24.45 Aligned_cols=116 Identities=16% Similarity=0.153 Sum_probs=66.3
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHH-----------------HHHhccCCCCCCcEEEEec
Q 020098 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR-----------------FIKERKQRDPEVEVTVATK 134 (331)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~-----------------~l~~~~~~~~R~~~~i~tK 134 (331)
.+.+...++.+.+-+.|+.|+=|.-.-.. -+++-+ .|+.... ...-|+|+|-
T Consensus 74 l~~e~~~~L~~~~~~~Gi~~~stpfd~~s---------vd~l~~~~v~~~KI~S~~~~n~~LL~~va~--~gkPvilstG 142 (327)
T TIGR03586 74 TPWEWHKELFERAKELGLTIFSSPFDETA---------VDFLESLDVPAYKIASFEITDLPLIRYVAK--TGKPIIMSTG 142 (327)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEccCCHHH---------HHHHHHcCCCEEEECCccccCHHHHHHHHh--cCCcEEEECC
Confidence 45677788889999999999876533221 111111 1111111 1244555444
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCC--hH-HHHHHHHHHHHcCceeEEEeecCcHHHHHHH
Q 020098 135 FAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG--NE-GFIDGLGDAVEQGLVKAVGVSNYSEKRLRNA 208 (331)
Q Consensus 135 ~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~--~~-~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~ 208 (331)
. -+.+.++.+++...+. |. -|+.++|....++ .+ -=+.++..|++.=. .-||+|+|+.....-+
T Consensus 143 ~------~t~~Ei~~Av~~i~~~-g~--~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~-~pVG~SDHt~G~~~~~ 209 (327)
T TIGR03586 143 I------ATLEEIQEAVEACREA-GC--KDLVLLKCTSSYPAPLEDANLRTIPDLAERFN-VPVGLSDHTLGILAPV 209 (327)
T ss_pred C------CCHHHHHHHHHHHHHC-CC--CcEEEEecCCCCCCCcccCCHHHHHHHHHHhC-CCEEeeCCCCchHHHH
Confidence 3 4688888888877543 42 3799999765533 11 12455555555433 4699999976543333
No 304
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=27.91 E-value=5.1e+02 Score=24.28 Aligned_cols=29 Identities=14% Similarity=0.039 Sum_probs=22.9
Q ss_pred CCCchhhHHHHHHHHHHHHHC-----CCCeEECC
Q 020098 67 FQWDDRKMKAAKAAFDTSLDN-----GITFFDTA 95 (331)
Q Consensus 67 ~~~~~~~~~~~~~~l~~A~~~-----Gvn~~Dta 95 (331)
+|.+.+++.-+..+|+.|.+. |-..++.+
T Consensus 36 NP~gSvKDR~A~~mI~~Ae~~G~l~pG~tIVE~T 69 (300)
T COG0031 36 NPGGSVKDRIALYMIEDAEKRGLLKPGGTIVEAT 69 (300)
T ss_pred CCCCchhHHHHHHHHHHHHHcCCCCCCCEEEEcC
Confidence 345678889999999999877 56688854
No 305
>PLN00191 enolase
Probab=27.76 E-value=2.6e+02 Score=27.90 Aligned_cols=82 Identities=11% Similarity=-0.026 Sum_probs=54.1
Q ss_pred ccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEee--cCcHHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhH
Q 020098 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKA 240 (331)
Q Consensus 163 iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs--~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~ 240 (331)
.++.+|..|-.. +-|+.+.+|.++.+|.-+|=- ..+++.+.++++. ...+++++..|-.-.-.+-.++.+
T Consensus 311 y~I~~IEDPl~~---~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~-----~aad~i~iKl~qiGGITea~~~a~ 382 (457)
T PLN00191 311 YPIVSIEDPFDQ---DDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQE-----KACNALLLKVNQIGTVTESIEAVK 382 (457)
T ss_pred CCcEEEECCCCc---ccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHh-----CCCCEEEecccccCCHHHHHHHHH
Confidence 467788887542 336777777778878766622 2457888888654 346666666664333222235889
Q ss_pred HHHHcCCeEEEc
Q 020098 241 ACDELGITLIAY 252 (331)
Q Consensus 241 ~~~~~gi~v~a~ 252 (331)
.|+++|+.++..
T Consensus 383 lA~~~G~~~~is 394 (457)
T PLN00191 383 MSKAAGWGVMTS 394 (457)
T ss_pred HHHHCCCEEEeC
Confidence 999999999763
No 306
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=27.67 E-value=4.8e+02 Score=23.86 Aligned_cols=25 Identities=8% Similarity=0.077 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECCc
Q 020098 72 RKMKAAKAAFDTSLDNGITFFDTAE 96 (331)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gvn~~Dta~ 96 (331)
.+.++-.++++.-.+.||+.|+...
T Consensus 17 ~s~e~K~~i~~~L~~~Gv~~IEvGs 41 (274)
T cd07938 17 IPTEDKIELIDALSAAGLRRIEVTS 41 (274)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 4557888888888899999999873
No 307
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=27.66 E-value=2.4e+02 Score=24.71 Aligned_cols=49 Identities=18% Similarity=0.192 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecC
Q 020098 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY 200 (331)
Q Consensus 142 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~ 200 (331)
.+++.+.+.+ +.. .+|++|||.... .+.++.|.+...-..++.+.+.+.
T Consensus 64 ~~~~~i~~~~----~~~---~~d~vQLHg~e~---~~~~~~l~~~~~~~iik~i~v~~~ 112 (210)
T PRK01222 64 ASDEEIDEIV----ETV---PLDLLQLHGDET---PEFCRQLKRRYGLPVIKALRVRSA 112 (210)
T ss_pred CCHHHHHHHH----Hhc---CCCEEEECCCCC---HHHHHHHHhhcCCcEEEEEecCCH
Confidence 4455554443 334 478999999653 333444443332456788888653
No 308
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=27.64 E-value=3.6e+02 Score=25.48 Aligned_cols=30 Identities=27% Similarity=0.289 Sum_probs=19.9
Q ss_pred eccCCCCChHHHHHHHHHHHHcCceeEEEee
Q 020098 168 LHWAGIWGNEGFIDGLGDAVEQGLVKAVGVS 198 (331)
Q Consensus 168 lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs 198 (331)
+|--...+.++-+..|+.+++.| +|++|+.
T Consensus 99 l~~ega~~~~~dl~~L~~~~~~G-vR~lglt 128 (313)
T COG2355 99 LHMEGAEPLGDDLDKLELFHALG-VRSLGLT 128 (313)
T ss_pred EeccCcccccccHHHHHHHHHhC-ceEEEee
Confidence 33333345666677788888888 7888775
No 309
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=27.64 E-value=3.2e+02 Score=26.15 Aligned_cols=113 Identities=12% Similarity=0.151 Sum_probs=62.2
Q ss_pred HHHHHHHHHCCCCeEECCcCc---------CCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHH
Q 020098 78 KAAFDTSLDNGITFFDTAEVY---------GSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL 148 (331)
Q Consensus 78 ~~~l~~A~~~Gvn~~Dta~~Y---------g~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~ 148 (331)
.+.++...+.|+|.+-.+-.- +.+++ .+-+-++++...... =+.+-+--=.|. ...+.+.++
T Consensus 103 ~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~------~~~~~~ai~~~~~~g-~~~v~~Dli~Gl--Pgqt~~~~~ 173 (370)
T PRK06294 103 ESYIRALALTGINRISIGVQTFDDPLLKLLGRTHS------SSKAIDAVQECSEHG-FSNLSIDLIYGL--PTQSLSDFI 173 (370)
T ss_pred HHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCC------HHHHHHHHHHHHHcC-CCeEEEEeecCC--CCCCHHHHH
Confidence 455777778899988765443 33332 222334443332110 012222222222 457888888
Q ss_pred HHHHHHHHhhCCCcccEEEecc-CCC------------CChHH-----HHHHHHHHHHcCceeEEEeecCc
Q 020098 149 AALKDSLFRLGLSSVELYQLHW-AGI------------WGNEG-----FIDGLGDAVEQGLVKAVGVSNYS 201 (331)
Q Consensus 149 ~~v~~sL~~Lg~d~iDl~~lh~-p~~------------~~~~~-----~~~~L~~l~~~G~i~~iGvs~~~ 201 (331)
+.++..++ |+.++|.+|.+.- |.. .+.++ ...+.+.|.+.|. .++++|||.
T Consensus 174 ~~l~~~~~-l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeis~fa 242 (370)
T PRK06294 174 VDLHQAIT-LPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGF-TRYELASYA 242 (370)
T ss_pred HHHHHHHc-cCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCC-Ceeeeeeee
Confidence 88888764 8999999988853 321 11111 1223455666776 447788875
No 310
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=27.59 E-value=5.7e+02 Score=24.69 Aligned_cols=105 Identities=15% Similarity=0.096 Sum_probs=66.2
Q ss_pred hHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEe-ccCCC-CChHHHHHHHHHH
Q 020098 109 SETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQL-HWAGI-WGNEGFIDGLGDA 186 (331)
Q Consensus 109 sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~l-h~p~~-~~~~~~~~~L~~l 186 (331)
|...+..-+++.....+=+-+-|-||+ .-.-|..|.. ..++.|+-.+.-+++. |...+ .-..++-++++.|
T Consensus 173 s~~~L~~ll~~L~~IpHv~iiRi~TR~----pvv~P~RIt~---~L~~~l~~~~~~v~~~tH~NHp~Eit~e~~~A~~~L 245 (369)
T COG1509 173 SDKKLEWLLKRLRAIPHVKIIRIGTRL----PVVLPQRITD---ELCEILGKSRKPVWLVTHFNHPNEITPEAREACAKL 245 (369)
T ss_pred CHHHHHHHHHHHhcCCceeEEEeeccc----ceechhhccH---HHHHHHhccCceEEEEcccCChhhcCHHHHHHHHHH
Confidence 466666666655432122566688888 3455666664 4445555445556555 65433 3467899999999
Q ss_pred HHcCce------eEEEeecCcHHHHHHHHHHHHhcCCCeee
Q 020098 187 VEQGLV------KAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (331)
Q Consensus 187 ~~~G~i------~~iGvs~~~~~~l~~~~~~~~~~~~~~~~ 221 (331)
++.|.. ..=|| |.+++.+.++.+.....++.|-.
T Consensus 246 ~~aGv~l~NQsVLLrGV-ND~~evl~~L~~~L~~~gV~PYY 285 (369)
T COG1509 246 RDAGVPLLNQSVLLRGV-NDDPEVLKELSRALFDAGVKPYY 285 (369)
T ss_pred HHcCceeecchheeccc-CCCHHHHHHHHHHHHHcCCcceE
Confidence 999974 33455 56678888887777777765544
No 311
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=27.58 E-value=5.2e+02 Score=24.26 Aligned_cols=131 Identities=16% Similarity=0.095 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHH-CCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 020098 74 MKAAKAAFDTSLD-NGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (331)
Q Consensus 74 ~~~~~~~l~~A~~-~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~ 152 (331)
.++..++++..-+ .|++.+--+- |..-. ..+..+-+.+........=+.+-|.||. ....+..+...+-
T Consensus 127 ~~~~~~~i~~i~~~~~i~~VvltG--GEPL~----~~d~~L~~ll~~l~~i~~~~~iri~tr~----~~~~p~rit~el~ 196 (321)
T TIGR03821 127 KAQWKEALEYIAQHPEINEVILSG--GDPLM----AKDHRLDWLLNLLEQIPHLKRLRIHTRL----PVVIPDRITSGLC 196 (321)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeC--ccccc----CCchHHHHHHHHHHhCCCCcEEEEecCc----ceeeHHHhhHHHH
Confidence 3555665655443 3777655332 22110 1133344444332211011456677776 2344556666666
Q ss_pred HHHHhhCCCcccEEEeccCCC-CChHHHHHHHHHHHHcCceeEEEee-------cCcHHHHHHHHHHHHhcCCC
Q 020098 153 DSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKAVGVS-------NYSEKRLRNAYEKLKKRGIP 218 (331)
Q Consensus 153 ~sL~~Lg~d~iDl~~lh~p~~-~~~~~~~~~L~~l~~~G~i~~iGvs-------~~~~~~l~~~~~~~~~~~~~ 218 (331)
+.|+..|.+.+ +.+|-..+ .-.+++.++++.|++.|.. +++. |.+.+.+.++.+.+...|+.
T Consensus 197 ~~L~~~~~~~~--~~~h~dh~~Ei~d~~~~ai~~L~~~Gi~--v~~qtvllkgiNDn~~~l~~L~~~l~~~gv~ 266 (321)
T TIGR03821 197 DLLANSRLQTV--LVVHINHANEIDAEVADALAKLRNAGIT--LLNQSVLLRGVNDNADTLAALSERLFDAGVL 266 (321)
T ss_pred HHHHhcCCcEE--EEeeCCChHhCcHHHHHHHHHHHHcCCE--EEecceeeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 66766664433 23454222 2346688888888888853 2211 23566677776665555543
No 312
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=27.58 E-value=4.8e+02 Score=23.82 Aligned_cols=51 Identities=10% Similarity=0.147 Sum_probs=30.1
Q ss_pred chhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhc
Q 020098 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKER 120 (331)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~ 120 (331)
++++.+...+.++..++.|++-+=+.-..|-+.+-...+=++++-.+.+..
T Consensus 14 g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~ 64 (285)
T TIGR00674 14 GSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLV 64 (285)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHh
Confidence 568889999999999999999654433333322211222244444455443
No 313
>PRK13753 dihydropteroate synthase; Provisional
Probab=27.57 E-value=5e+02 Score=24.05 Aligned_cols=101 Identities=16% Similarity=0.199 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEE-eccCCC--CCh-HH---HHHHHHHHHHcCceeEEEeecCcHHHHHHHHHHHHh
Q 020098 142 LGRQSVLAALKDSLFRLGLSSVELYQ-LHWAGI--WGN-EG---FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK 214 (331)
Q Consensus 142 ~~~~~i~~~v~~sL~~Lg~d~iDl~~-lh~p~~--~~~-~~---~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~ 214 (331)
.+.+...+..++.+ .-|.|.||+=- -.+|.. .+. +| +...++.+++.+. .|.|-++.++.++.+++.
T Consensus 22 ~~~d~a~~~a~~m~-~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~--~ISIDT~~~~va~~al~a--- 95 (279)
T PRK13753 22 LDPAGAVTAAIEML-RVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMH--RVSIDSFQPETQRYALKR--- 95 (279)
T ss_pred CCHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCC--cEEEECCCHHHHHHHHHc---
Confidence 34555555555543 44788888744 344654 222 22 3467777777653 489999999999988654
Q ss_pred cCCCeeeeeecccccccCccccchhHHHHHcCCeEEEcccCc
Q 020098 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIA 256 (331)
Q Consensus 215 ~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~ 256 (331)
|..+ +|-+ +-+. .+ .+.+.+.+.++.++.+...+
T Consensus 96 -Gadi-INDV--sg~~-d~---~~~~vva~~~~~vVlmH~~~ 129 (279)
T PRK13753 96 -GVGY-LNDI--QGFP-DP---ALYPDIAEADCRLVVMHSAQ 129 (279)
T ss_pred -CCCE-EEeC--CCCC-ch---HHHHHHHHcCCCEEEEecCC
Confidence 2222 1222 1121 21 48888999999998877654
No 314
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=27.09 E-value=3.9e+02 Score=24.04 Aligned_cols=86 Identities=20% Similarity=0.217 Sum_probs=44.3
Q ss_pred cHHHHHHHHHHHHhc-CCCeeeeee-cccccccCcccc--------chhHHHHHcCCeEEEcccCccccccCCCCCCCCC
Q 020098 201 SEKRLRNAYEKLKKR-GIPLASNQV-NYSLIYRKPEEN--------GVKAACDELGITLIAYCPIAQGALTGKYTPQNPP 270 (331)
Q Consensus 201 ~~~~l~~~~~~~~~~-~~~~~~~q~-~~n~~~~~~~~~--------~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p 270 (331)
+.+.+.++.+.++.. +..+.+... .+|+.+...+.+ ..+++|++.|+..+...+-...
T Consensus 43 ~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~------------ 110 (279)
T cd00019 43 KKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIERLKDEIERCEELGIRLLVFHPGSYL------------ 110 (279)
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCC------------
Confidence 346666666666665 344443322 134444333222 3566777777776654221110
Q ss_pred CCCCCCccchhHHhhHHHHHHHHHHHHHhcCCC
Q 020098 271 TGPRGRIYTAEYLRNLQPLLNRIKELGENYSKT 303 (331)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s 303 (331)
.......+....+.+.++.++|+++|+.
T Consensus 111 -----~~~~~~~~~~~~~~l~~l~~~a~~~gi~ 138 (279)
T cd00019 111 -----GQSKEEGLKRVIEALNELIDKAETKGVV 138 (279)
T ss_pred -----CCCHHHHHHHHHHHHHHHHHhccCCCCE
Confidence 1123344555666666666667777764
No 315
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=27.04 E-value=4.2e+02 Score=25.93 Aligned_cols=106 Identities=24% Similarity=0.189 Sum_probs=57.6
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCC-----hHHHHHHHH
Q 020098 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (331)
Q Consensus 110 E~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~-----~~~~~~~L~ 184 (331)
|+-+-++|+...+..+.+-++|.|=+-. ..-.+.+..-+++. ++.+ ++++.++.|.... .+.++++|-
T Consensus 71 ~~kL~~~I~~~~~~~~p~~I~V~ttC~~---~~IGdDi~~v~~~~-~~~~---~~vi~v~t~gf~g~~~~G~~~a~~al~ 143 (427)
T cd01971 71 EDRLRELIKSTLSIIDADLFVVLTGCIA---EIIGDDVGAVVSEF-QEGG---APIVYLETGGFKGNNYAGHEIVLKAII 143 (427)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCcH---HHhhcCHHHHHHHh-hhcC---CCEEEEECCCcCcccccHHHHHHHHHH
Confidence 7778888777554333567777777632 11122233333333 3333 6889999887622 233344433
Q ss_pred H-HH------HcCceeEEEeecC-c---HHHHHHHHHHHHhcCCCeeee
Q 020098 185 D-AV------EQGLVKAVGVSNY-S---EKRLRNAYEKLKKRGIPLASN 222 (331)
Q Consensus 185 ~-l~------~~G~i~~iGvs~~-~---~~~l~~~~~~~~~~~~~~~~~ 222 (331)
+ +. +.+.|.-||..+. + ...++++.+.++..|+.+.++
T Consensus 144 ~~~~~~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~ 192 (427)
T cd01971 144 DQYVGQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNIL 192 (427)
T ss_pred HHhccCCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEE
Confidence 2 22 2346888986431 2 234555555577777666544
No 316
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=27.04 E-value=3.3e+02 Score=25.39 Aligned_cols=105 Identities=11% Similarity=0.013 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcccEEEeccCC-C---CChHHHHHHHHHHHH--cCce-eEEEeecCcHHHHHHHHHHHH
Q 020098 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAG-I---WGNEGFIDGLGDAVE--QGLV-KAVGVSNYSEKRLRNAYEKLK 213 (331)
Q Consensus 141 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~-~---~~~~~~~~~L~~l~~--~G~i-~~iGvs~~~~~~l~~~~~~~~ 213 (331)
..+.+.+++.++..+. -| +|-+++-.-. . ...+|-.+.++..++ .|++ -.+|++..+.++..++.+.++
T Consensus 25 ~iD~~~l~~lv~~li~-~G---v~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~ 100 (309)
T cd00952 25 TVDLDETARLVERLIA-AG---VDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALL 100 (309)
T ss_pred CcCHHHHHHHHHHHHH-cC---CCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHH
Confidence 3556666666655554 33 4555554322 1 233443333333322 3443 467888777777777777777
Q ss_pred hcCCCeeeeeec-ccccccCccccchhHH----HHHc-CCeEEEcc
Q 020098 214 KRGIPLASNQVN-YSLIYRKPEENGVKAA----CDEL-GITLIAYC 253 (331)
Q Consensus 214 ~~~~~~~~~q~~-~n~~~~~~~~~~~l~~----~~~~-gi~v~a~s 253 (331)
..|..-.++..+ |..... + +++++ |... ++.++.|.
T Consensus 101 ~~Gad~vlv~~P~y~~~~~--~--~l~~yf~~va~a~~~lPv~iYn 142 (309)
T cd00952 101 DLGADGTMLGRPMWLPLDV--D--TAVQFYRDVAEAVPEMAIAIYA 142 (309)
T ss_pred HhCCCEEEECCCcCCCCCH--H--HHHHHHHHHHHhCCCCcEEEEc
Confidence 777654444334 333322 1 34443 3445 57888774
No 317
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=27.00 E-value=2.6e+02 Score=27.32 Aligned_cols=46 Identities=11% Similarity=0.112 Sum_probs=27.5
Q ss_pred CCeeeeeecccccccCccccchhHHHHHcCCeEEEcccCccccccC
Q 020098 217 IPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTG 262 (331)
Q Consensus 217 ~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~L~~ 262 (331)
.+..++..+-||+..-..-..+.+.|+++|+.++.-..++.+.+..
T Consensus 150 tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~~q~ 195 (396)
T COG0626 150 TKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVLQR 195 (396)
T ss_pred ceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccccccC
Confidence 4556666666666554443346666666666666666666655543
No 318
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=26.92 E-value=2.4e+02 Score=28.24 Aligned_cols=102 Identities=13% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCcccE---------EEeccCCCCChHHHHHHHHHHHHc-CceeE---------EEeecCcHHHHHHH
Q 020098 148 LAALKDSLFRLGLSSVEL---------YQLHWAGIWGNEGFIDGLGDAVEQ-GLVKA---------VGVSNYSEKRLRNA 208 (331)
Q Consensus 148 ~~~v~~sL~~Lg~d~iDl---------~~lh~p~~~~~~~~~~~L~~l~~~-G~i~~---------iGvs~~~~~~l~~~ 208 (331)
+..+-+.|.++|++.|.+ +.+..+++ |+.|+.+++. ..++. +|..++.-+.++.+
T Consensus 27 kl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p------~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~f 100 (467)
T PRK14041 27 MLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENP------WERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELF 100 (467)
T ss_pred HHHHHHHHHHcCCCEEEecCCccchhhhcccCCCH------HHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHH
Q ss_pred HHHHHhcCCCeeeeeecccccccCccccchhHHHHHcCCeEEEcccCccc
Q 020098 209 YEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (331)
Q Consensus 209 ~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G 258 (331)
++.+...|+...-+-...|-+..-.. .+++++++|..+.+.-....+
T Consensus 101 v~~A~~~Gvd~irif~~lnd~~n~~~---~i~~ak~~G~~v~~~i~~t~~ 147 (467)
T PRK14041 101 VKKVAEYGLDIIRIFDALNDIRNLEK---SIEVAKKHGAHVQGAISYTVS 147 (467)
T ss_pred HHHHHHCCcCEEEEEEeCCHHHHHHH---HHHHHHHCCCEEEEEEEeccC
No 319
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=26.90 E-value=6.3e+02 Score=25.01 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=56.3
Q ss_pred HHHHHHHHHhccCCCC-CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCc--ccEEEeccCCCCC---hHHH---H
Q 020098 110 ETLLGRFIKERKQRDP-EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSS--VELYQLHWAGIWG---NEGF---I 180 (331)
Q Consensus 110 E~~iG~~l~~~~~~~~-R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d~--iDl~~lh~p~~~~---~~~~---~ 180 (331)
|+-+-++|+...+..| .+-++|.|=+-. +-|-..++...+++..++ +.++.+|.|.... ..+. .
T Consensus 109 e~kL~~aI~e~~~~~p~p~~I~V~stC~~-------~lIGDDi~~v~~e~~~~~~~~pvv~v~t~gf~g~s~~~G~~~a~ 181 (457)
T TIGR01284 109 EKKLKRCILEAFREFPEIKRMYTYATCTT-------ALIGDDIDAIAREVMEEIPDVDVFAINAPGFAGPSQSKGHHVAN 181 (457)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCChH-------HhhccCHHHHHHHHHHhcCCCeEEEeeCCCcCCcccchHHHHHH
Confidence 8888888877654332 244777777632 222233333333333222 6799999888632 2222 2
Q ss_pred HH-HHHHH--------HcCceeEEEeecCcHHHHHHHHHHHHhcCCCee
Q 020098 181 DG-LGDAV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (331)
Q Consensus 181 ~~-L~~l~--------~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~ 220 (331)
++ ++.++ ..++|.-||-.++ ...+.++.+..+..|+.+.
T Consensus 182 ~al~~~l~~~~~~~~~~~~~VNiiG~~~~-~gd~~el~~lL~~~Gl~v~ 229 (457)
T TIGR01284 182 ITWINDKVGTAEPEITTEYDVNLIGEYNI-QGDLWVLKKYFERMGIQVL 229 (457)
T ss_pred HHHHHHHhCccCcccCCCCeEEEEccCCc-hhhHHHHHHHHHHcCCeEE
Confidence 22 23333 2367888885554 3445666666777776554
No 320
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=26.76 E-value=3.8e+02 Score=24.89 Aligned_cols=68 Identities=18% Similarity=0.262 Sum_probs=47.1
Q ss_pred CChHHHHHHHHHHHHcCceeEEEeecC-cHHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHHHHHcCCeEE
Q 020098 174 WGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLI 250 (331)
Q Consensus 174 ~~~~~~~~~L~~l~~~G~i~~iGvs~~-~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~ 250 (331)
...+|+++.+ .+++.||-+|=.-.| +.+.+..+++.+.+.+++.-+ ++++.... ..++.|.+.+|...
T Consensus 133 p~IKE~vR~~--I~~A~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYi------LLD~~~~~-~Fl~Mc~~~~v~~~ 201 (284)
T PF07894_consen 133 PHIKEVVRRM--IQQAQKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYI------LLDEQNLP-HFLEMCEKLGVNLQ 201 (284)
T ss_pred CCHHHHHHHH--HHHhcceeEEEeeccccHHHHHHHHHHHHhcCCcEEE------EechhcCh-HHHHHHHHCCCChh
Confidence 3456666654 457788988888888 588899999987666665444 45554433 38889988877643
No 321
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=26.72 E-value=2.3e+02 Score=30.38 Aligned_cols=69 Identities=12% Similarity=0.132 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHc--CceeEEEeecCcHHHHHHHHHH
Q 020098 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNYSEKRLRNAYEK 211 (331)
Q Consensus 142 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~--G~i~~iGvs~~~~~~l~~~~~~ 211 (331)
.+.+.+++-++...........-+|+|+..+.. ..+.+++|.+..++ ..+++|-++|.....+..+.+.
T Consensus 99 rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~L-T~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSR 169 (830)
T PRK07003 99 RGVDEMAALLERAVYAPVDARFKVYMIDEVHML-TNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 (830)
T ss_pred ccHHHHHHHHHHHHhccccCCceEEEEeChhhC-CHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhh
Confidence 445666666655443332234578888887754 34567777777776 5799999999865544444433
No 322
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=26.51 E-value=3.8e+02 Score=23.70 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=27.4
Q ss_pred CCeeeeeecccccccCccccchhHHHHHcCCeEEEc
Q 020098 217 IPLASNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (331)
Q Consensus 217 ~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~ 252 (331)
..+.++=-+||++|....- ++.+..++.|+.|+..
T Consensus 184 ~~Ivl~GrpY~~~D~~in~-~I~~~l~~~G~~vit~ 218 (221)
T PF09989_consen 184 PAIVLLGRPYNIYDPFINM-GIPDKLRSLGVPVITE 218 (221)
T ss_pred ceEEEEcCCCcCCCcccCC-chHHHHHHCCCeeeCc
Confidence 3566666788998886554 5999999999999864
No 323
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=26.37 E-value=5.6e+02 Score=24.25 Aligned_cols=47 Identities=15% Similarity=0.196 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcC
Q 020098 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG 190 (331)
Q Consensus 142 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G 190 (331)
.+.+.|.+.+++. ...|..++.+..-+.|+ .+.+.+.+.++.+++..
T Consensus 79 l~~eeI~~~a~~~-~~~G~~~v~l~~G~~p~-~~~~~~~e~i~~Ik~~~ 125 (351)
T TIGR03700 79 MSLEEIVARVKEA-YAPGATEVHIVGGLHPN-LPFEWYLDMIRTLKEAY 125 (351)
T ss_pred CCHHHHHHHHHHH-HHCCCcEEEEecCCCCC-CCHHHHHHHHHHHHHHC
Confidence 5778888877754 56899999888766675 46777888888888875
No 324
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=26.34 E-value=5.5e+02 Score=24.14 Aligned_cols=152 Identities=14% Similarity=0.073 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 020098 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (331)
Q Consensus 75 ~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~s 154 (331)
++..+.+..+.+.|++.|=.-- +.... .+.+ +++++.. +.-++.|=.- ...+.+... .
T Consensus 139 ~~~~~~~~~~~~~Gf~~~KiKv--~~~~d------~~~l-~~vr~~~---g~~~l~lDaN-----~~~~~~~a~-----~ 196 (354)
T cd03317 139 EQLLKQIERYLEEGYKRIKLKI--KPGWD------VEPL-KAVRERF---PDIPLMADAN-----SAYTLADIP-----L 196 (354)
T ss_pred HHHHHHHHHHHHcCCcEEEEec--ChHHH------HHHH-HHHHHHC---CCCeEEEECC-----CCCCHHHHH-----H
Confidence 5566777888899999774311 22111 3333 3343332 1112332222 224444431 2
Q ss_pred HHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCce-eEEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccCc
Q 020098 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLV-KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP 233 (331)
Q Consensus 155 L~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i-~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~ 233 (331)
+++|. ..++.++..|-. .+-++.+.+++++-.+ -..|=|.++.+.+..+++. ...+++|+...-+-.-.
T Consensus 197 ~~~l~--~~~i~~iEeP~~---~~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~-----~~~d~~~ik~~~~GGit 266 (354)
T cd03317 197 LKRLD--EYGLLMIEQPLA---ADDLIDHAELQKLLKTPICLDESIQSAEDARKAIEL-----GACKIINIKPGRVGGLT 266 (354)
T ss_pred HHHhh--cCCccEEECCCC---hhHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHc-----CCCCEEEecccccCCHH
Confidence 34442 246667776643 2236667777766443 3567777888888888654 34677777665432211
Q ss_pred cccchhHHHHHcCCeEEEcccCccc
Q 020098 234 EENGVKAACDELGITLIAYCPIAQG 258 (331)
Q Consensus 234 ~~~~~l~~~~~~gi~v~a~s~l~~G 258 (331)
+-..+...|+.+||.++..+....|
T Consensus 267 ~~~~i~~~A~~~gi~~~~g~~~es~ 291 (354)
T cd03317 267 EALKIHDLCQEHGIPVWCGGMLESG 291 (354)
T ss_pred HHHHHHHHHHHcCCcEEecCcccch
Confidence 1124889999999999876554443
No 325
>KOG1350 consensus F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=26.27 E-value=3.9e+02 Score=25.49 Aligned_cols=135 Identities=16% Similarity=0.108 Sum_probs=80.4
Q ss_pred HHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCC-CCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCcc
Q 020098 85 LDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRD-PEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSV 163 (331)
Q Consensus 85 ~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~-~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d~i 163 (331)
+-.|-..+||..--.-.-. -+.+|+.+.-.++.+ .|.. |-||....-+...++.++.++++..-.-|+..+
T Consensus 111 LvRG~~VlDtG~Pi~ipVG------~~tLGRI~NViGePiDerGp--i~s~~~~~IHaeaP~f~e~s~~~eIl~TGIKVv 182 (521)
T KOG1350|consen 111 LVRGQKVLDTGYPISIPVG------PETLGRIMNVIGEPIDERGP--IKSKKYSPIHAEAPEFVEMSVEQEILVTGIKVV 182 (521)
T ss_pred hhcCcccccCCCceeeecC------HHHHhhHHHhcCCcccccCC--cccccccccccCChhHhhhcccHHHHhhcceee
Confidence 4567777887654322222 667888887766533 1222 344443322455688899999999999999999
Q ss_pred cEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecCcH-HHHHHHH-HHHHhcCCCeeeeeecccccccCccccchhHH
Q 020098 164 ELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSE-KRLRNAY-EKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (331)
Q Consensus 164 Dl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~~~-~~l~~~~-~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~ 241 (331)
|++-- ..+-|||..+|=.+..- -.+.+++ ++++.+|. +++ --.+-+|..+.+++...
T Consensus 183 DLLAP-----------------YakGGKIGLFGGAGVGKTVlImELINNiAKaHGG-ySV---F~GvGERTREGNDLY~E 241 (521)
T KOG1350|consen 183 DLLAP-----------------YAKGGKIGLFGGAGVGKTVLIMELINNIAKAHGG-YSV---FAGVGERTREGNDLYHE 241 (521)
T ss_pred eeecc-----------------cccCCeeeeeccCCccceeeHHHHHHHHHHhcCC-eEE---eeccccccccccHHHHH
Confidence 98642 24668888887766532 2234443 34444442 222 12234454454567777
Q ss_pred HHHcCCe
Q 020098 242 CDELGIT 248 (331)
Q Consensus 242 ~~~~gi~ 248 (331)
..+.|+-
T Consensus 242 M~E~gVI 248 (521)
T KOG1350|consen 242 MIESGVI 248 (521)
T ss_pred HHhcCee
Confidence 7777654
No 326
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=26.15 E-value=2.9e+02 Score=23.87 Aligned_cols=78 Identities=19% Similarity=0.185 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 020098 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (331)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~ 149 (331)
+..++++.....+.|.++|..|+=|+..|..+.+ -.--.+.+++.. + .-+-.|... .-.+.+...+
T Consensus 126 ~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~~~a------t~~~v~~~~~~~----~--~~v~ik~aG--Gikt~~~~l~ 191 (203)
T cd00959 126 GLLTDEEIIKACEIAIEAGADFIKTSTGFGPGGA------TVEDVKLMKEAV----G--GRVGVKAAG--GIRTLEDALA 191 (203)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCC------CHHHHHHHHHHh----C--CCceEEEeC--CCCCHHHHHH
Q ss_pred HHHHHHHhhCCC
Q 020098 150 ALKDSLFRLGLS 161 (331)
Q Consensus 150 ~v~~sL~~Lg~d 161 (331)
.++.-..|+|+.
T Consensus 192 ~~~~g~~riG~s 203 (203)
T cd00959 192 MIEAGATRIGTS 203 (203)
T ss_pred HHHhChhhccCC
No 327
>PLN02775 Probable dihydrodipicolinate reductase
Probab=26.11 E-value=3.8e+02 Score=24.94 Aligned_cols=56 Identities=14% Similarity=0.105 Sum_probs=41.0
Q ss_pred HHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecCcHHHHHHHH
Q 020098 151 LKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAY 209 (331)
Q Consensus 151 v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~ 209 (331)
+++.|..+.-+|.|+++|..- .++-+.+.++.+.+.|+--=||.++|+.+++.++.
T Consensus 68 l~~~l~~~~~~~~~~VvIDFT---~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~ 123 (286)
T PLN02775 68 REAVLSSVKAEYPNLIVVDYT---LPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDV 123 (286)
T ss_pred HHHHHHHhhccCCCEEEEECC---ChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHH
Confidence 445554444457898888764 44677788888888898888999999888777663
No 328
>PRK10200 putative racemase; Provisional
Probab=25.99 E-value=2.8e+02 Score=24.68 Aligned_cols=65 Identities=11% Similarity=0.024 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHhhCCCcccEEEeccCCCC-------------ChHHHHHHHHHHHHcCceeEEEeecCcHHHHHHH
Q 020098 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-------------GNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNA 208 (331)
Q Consensus 143 ~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~-------------~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~ 208 (331)
+-+.+++=++..-.+.+-+|+|.+.+|+++.. +...+.+.++.|.+.| +++|-+.+.++....+.
T Consensus 15 T~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g-~~~iviaCNTah~~~~~ 92 (230)
T PRK10200 15 TIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAG-AEGIVLCTNTMHKVADA 92 (230)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCEEEECCchHHHHHHH
Confidence 45556666666667788899999999987641 2345677788887777 78999999887665433
No 329
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=25.97 E-value=2.5e+02 Score=25.26 Aligned_cols=38 Identities=8% Similarity=0.148 Sum_probs=24.0
Q ss_pred ChHHHHHHHHHHHHcCceeEEEeecCcHHHHHHHHHHHH
Q 020098 175 GNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLK 213 (331)
Q Consensus 175 ~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~ 213 (331)
...++.+.|+.|+++|..-.| +||.....+...++...
T Consensus 102 ~~pg~~elL~~L~~~g~~l~I-~T~~~~~~~~~~l~~~~ 139 (267)
T PRK13478 102 PIPGVLEVIAALRARGIKIGS-TTGYTREMMDVVVPLAA 139 (267)
T ss_pred CCCCHHHHHHHHHHCCCEEEE-EcCCcHHHHHHHHHHHh
Confidence 345677788889999854333 55556666666655433
No 330
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=25.93 E-value=2.6e+02 Score=28.82 Aligned_cols=102 Identities=13% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCcccEE---EeccCCCCChHHHHHHHHHHHHcCc----------eeEEEeecCcHHHHHHHHHHHHh
Q 020098 148 LAALKDSLFRLGLSSVELY---QLHWAGIWGNEGFIDGLGDAVEQGL----------VKAVGVSNYSEKRLRNAYEKLKK 214 (331)
Q Consensus 148 ~~~v~~sL~~Lg~d~iDl~---~lh~p~~~~~~~~~~~L~~l~~~G~----------i~~iGvs~~~~~~l~~~~~~~~~ 214 (331)
+..+-+.|.+.|.++|++. -++..-++-.++-|+.|+.+++... ...+|..++.-+.+++.++.+..
T Consensus 23 kl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~~a~~ 102 (582)
T TIGR01108 23 MLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFVKKAVE 102 (582)
T ss_pred HHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHHHHHHH
Q ss_pred cCCCeeeeeecccccccCccccchhHHHHHcCCeEEEc
Q 020098 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (331)
Q Consensus 215 ~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~ 252 (331)
.|+...-+-...|-...-.. .+++++++|..+.+.
T Consensus 103 ~Gvd~irif~~lnd~~n~~~---~i~~ak~~G~~v~~~ 137 (582)
T TIGR01108 103 NGMDVFRIFDALNDPRNLQA---AIQAAKKHGAHAQGT 137 (582)
T ss_pred CCCCEEEEEEecCcHHHHHH---HHHHHHHcCCEEEEE
No 331
>PRK13561 putative diguanylate cyclase; Provisional
Probab=25.89 E-value=1.7e+02 Score=30.10 Aligned_cols=74 Identities=15% Similarity=0.262 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHcCceeEEEeecCcH--HHHHHHHHHHHhcCCCeeeeeecccccccCccc----cchhHHHHHcCCeE
Q 020098 176 NEGFIDGLGDAVEQGLVKAVGVSNYSE--KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE----NGVKAACDELGITL 249 (331)
Q Consensus 176 ~~~~~~~L~~l~~~G~i~~iGvs~~~~--~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~----~~~l~~~~~~gi~v 249 (331)
.+.+...+++|++.|- .|++.+|.. ..+..+.+. ...+++.+-+.-++...-... +.++..|+..|+.|
T Consensus 533 ~~~~~~~~~~l~~~G~--~i~lddfG~g~ssl~~L~~l---~~l~~d~lKiD~s~i~~i~~~~~~v~~i~~~a~~l~i~v 607 (651)
T PRK13561 533 PHAAVAILRPLRNAGV--RVALDDFGMGYAGLRQLQHM---KSLPIDVLKIDKMFVDGLPEDDSMVAAIIMLAQSLNLQV 607 (651)
T ss_pred HHHHHHHHHHHHHCCC--EEEEECCCCCcccHHHHhhc---CCCCCcEEEECHHHHhcCCCCHHHHHHHHHHHHHCCCcE
Confidence 3567777888888883 466666632 222222110 114566666554443332111 24788899999998
Q ss_pred EEccc
Q 020098 250 IAYCP 254 (331)
Q Consensus 250 ~a~s~ 254 (331)
+|-+.
T Consensus 608 iAegV 612 (651)
T PRK13561 608 IAEGV 612 (651)
T ss_pred EEecC
Confidence 88443
No 332
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=25.82 E-value=2.5e+02 Score=27.93 Aligned_cols=71 Identities=13% Similarity=0.114 Sum_probs=48.0
Q ss_pred HHHHHHHcCceeEEEeecCcHHHHHHHHHHHHhc-CC-C-eeeeeecccccccCccccchhHHHHHcCCeEEEccc
Q 020098 182 GLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKR-GI-P-LASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (331)
Q Consensus 182 ~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~-~~-~-~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~ 254 (331)
-...+-+.|-+..+|..+.+++++++.++.++.. .- + |-+|-+ .++-+...+ ..+++.|.+++|.++..+.
T Consensus 35 LVaAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~-~~~~~~~~e-~~~v~l~l~~~V~~veasa 108 (444)
T TIGR02814 35 LVIAMGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLI-HSPSDPALE-WGLVDLLLRHGVRIVEASA 108 (444)
T ss_pred HHHHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEec-ccCCCcccH-HHHHHHHHHcCCCEEEecc
Confidence 3445568899999999999999999998887652 22 3 554432 222222212 2588999999999886654
No 333
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=25.78 E-value=5.2e+02 Score=23.62 Aligned_cols=83 Identities=11% Similarity=0.156 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHCCCCeEEC---CcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 020098 74 MKAAKAAFDTSLDNGITFFDT---AEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (331)
Q Consensus 74 ~~~~~~~l~~A~~~Gvn~~Dt---a~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~ 150 (331)
.++..+..+.+.+.|+..||. ++.+..+ ......+.+.+-+.++.... .-++-|..|+.. +. +.+ ..
T Consensus 101 ~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~-g~~~~~~~~~~~eiv~~vr~---~~~~Pv~vKl~~---~~--~~~-~~ 170 (296)
T cd04740 101 VEEFVEVAEKLADAGADAIELNISCPNVKGG-GMAFGTDPEAVAEIVKAVKK---ATDVPVIVKLTP---NV--TDI-VE 170 (296)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCCC-cccccCCHHHHHHHHHHHHh---ccCCCEEEEeCC---Cc--hhH-HH
Confidence 467777888888889999985 2222110 00011236777777776642 126778899853 11 122 23
Q ss_pred HHHHHHhhCCCcccEE
Q 020098 151 LKDSLFRLGLSSVELY 166 (331)
Q Consensus 151 v~~sL~~Lg~d~iDl~ 166 (331)
+-+.+...|.|.|++.
T Consensus 171 ~a~~~~~~G~d~i~~~ 186 (296)
T cd04740 171 IARAAEEAGADGLTLI 186 (296)
T ss_pred HHHHHHHcCCCEEEEE
Confidence 3345677887776653
No 334
>PLN02610 probable methionyl-tRNA synthetase
Probab=25.68 E-value=2.8e+02 Score=29.80 Aligned_cols=95 Identities=9% Similarity=-0.015 Sum_probs=53.6
Q ss_pred eEECCcCcCCCCCCCCC-ch-----HHHHHHHHHhccCCCCCCcEEEEecCCCC---------CCCCCH----HHHHHHH
Q 020098 91 FFDTAEVYGSRASFGAI-NS-----ETLLGRFIKERKQRDPEVEVTVATKFAAL---------PWRLGR----QSVLAAL 151 (331)
Q Consensus 91 ~~Dta~~Yg~g~~~~~~-~s-----E~~iG~~l~~~~~~~~R~~~~i~tK~~~~---------~~~~~~----~~i~~~v 151 (331)
+|-|+..|-||.- |.+ .. -.++.|+.+..+ .+++..|-.-.. ....++ +.+.+.+
T Consensus 20 ~ITt~~pY~Ng~~-HlGH~~~~~l~aDv~aRy~r~~G-----~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~ 93 (801)
T PLN02610 20 LITSALPYVNNVP-HLGNIIGCVLSADVFARYCRLRG-----YNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIH 93 (801)
T ss_pred EEeCCCCCCCCCc-ccchhhhhHHHHHHHHHHHHhCC-----CceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6667777777642 322 22 234455555444 455555544210 012233 3345678
Q ss_pred HHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCcee
Q 020098 152 KDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK 193 (331)
Q Consensus 152 ~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~ 193 (331)
++.+++||+++ |.|.-. .++.-.+-+.+.+.+|+++|.|-
T Consensus 94 ~~~~~~l~i~~-D~f~rT-~~~~h~~~vq~~f~~L~~~G~Iy 133 (801)
T PLN02610 94 KEVYDWFDISF-DKFGRT-STPQQTEICQAIFKKLMENNWLS 133 (801)
T ss_pred HHHHHHcCCcc-ccCccC-CCHHHHHHHHHHHHHHHHCCCEE
Confidence 88999999885 743221 11123567888899999999973
No 335
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=25.65 E-value=3.5e+02 Score=26.25 Aligned_cols=113 Identities=12% Similarity=0.046 Sum_probs=63.4
Q ss_pred HHHHHHHHHCCCCeEECCcCc---------CCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHH
Q 020098 78 KAAFDTSLDNGITFFDTAEVY---------GSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL 148 (331)
Q Consensus 78 ~~~l~~A~~~Gvn~~Dta~~Y---------g~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~ 148 (331)
.+.++...+.|+|.+-..-.- +.+++ .+-+-++++...... =+.+-+--=.|. ...+.+.++
T Consensus 115 ~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~------~~~~~~ai~~l~~~G-~~~v~~dlI~Gl--Pgqt~e~~~ 185 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHR------VKDIFAAVDLIHQAG-IENFSLDLISGL--PHQTLEDWQ 185 (400)
T ss_pred HHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCC------HHHHHHHHHHHHHcC-CCeEEEEeecCC--CCCCHHHHH
Confidence 355666678899988765543 33333 333334444332110 011222222232 457888888
Q ss_pred HHHHHHHHhhCCCcccEEEecc-CCC------------CC-hHH---H-HHHHHHHHHcCceeEEEeecCc
Q 020098 149 AALKDSLFRLGLSSVELYQLHW-AGI------------WG-NEG---F-IDGLGDAVEQGLVKAVGVSNYS 201 (331)
Q Consensus 149 ~~v~~sL~~Lg~d~iDl~~lh~-p~~------------~~-~~~---~-~~~L~~l~~~G~i~~iGvs~~~ 201 (331)
+.++..+ .|+.++|.++.+.- |.. .+ .++ . -.+.+.|.+.|.. ++++|||.
T Consensus 186 ~tl~~~~-~l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yeisnfa 254 (400)
T PRK07379 186 ASLEAAI-ALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYE-HYEISNYA 254 (400)
T ss_pred HHHHHHH-cCCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc-eeeeeheE
Confidence 8887766 48899999987753 221 11 112 2 2345667777865 58888885
No 336
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=25.46 E-value=3.6e+02 Score=27.09 Aligned_cols=48 Identities=15% Similarity=0.058 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCcee
Q 020098 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK 193 (331)
Q Consensus 144 ~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~ 193 (331)
.+...+.+++.+++||++ +|.+. ...+..-.+.+.+.+++|+++|.|-
T Consensus 67 ~~~~~~~~~~~l~~LgI~-~D~~~-~t~~~~~~~~v~~~~~~L~~kG~iY 114 (530)
T TIGR00398 67 VDKYHEEFKDDWKWLNIS-FDRFI-RTTDEEHKEIVQKIFQKLKENGYIY 114 (530)
T ss_pred HHHHHHHHHHHHHHhCCC-CCCCc-cCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 345667888999999997 57532 1111122456788999999999983
No 337
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=25.29 E-value=3.2e+02 Score=28.24 Aligned_cols=101 Identities=13% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCcccEE---EeccCCCCChHHHHHHHHHHHHcCc-eeE---------EEeecCcHHHHHHHHHHHHh
Q 020098 148 LAALKDSLFRLGLSSVELY---QLHWAGIWGNEGFIDGLGDAVEQGL-VKA---------VGVSNYSEKRLRNAYEKLKK 214 (331)
Q Consensus 148 ~~~v~~sL~~Lg~d~iDl~---~lh~p~~~~~~~~~~~L~~l~~~G~-i~~---------iGvs~~~~~~l~~~~~~~~~ 214 (331)
...+-..|.++|.+.|+++ .++.--++..++-|+.|+.+++... ++. +|.+++.-+.++..++.+..
T Consensus 29 ~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~a~~ 108 (593)
T PRK14040 29 MLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVERAVK 108 (593)
T ss_pred HHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHHHHHh
Q ss_pred cCCCeeeeeecccccccCccccchhHHHHHcCCeEEE
Q 020098 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (331)
Q Consensus 215 ~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a 251 (331)
.|+...-+-..+|-+..-.. .+++++++|..+.+
T Consensus 109 ~Gid~~rifd~lnd~~~~~~---ai~~ak~~G~~~~~ 142 (593)
T PRK14040 109 NGMDVFRVFDAMNDPRNLET---ALKAVRKVGAHAQG 142 (593)
T ss_pred cCCCEEEEeeeCCcHHHHHH---HHHHHHHcCCeEEE
No 338
>PRK06553 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=25.29 E-value=5.5e+02 Score=23.75 Aligned_cols=64 Identities=14% Similarity=0.003 Sum_probs=42.2
Q ss_pred HHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHh
Q 020098 78 KAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFR 157 (331)
Q Consensus 78 ~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~ 157 (331)
.+.++.|++.|=..|=.+.|||| =+++|.++.... ..+.+..|- .....+.+-+.+..++
T Consensus 122 ~e~l~~a~a~gkgvIllt~H~Gn---------WE~~~~~l~~~~-----~~~~~vyr~------~~n~~~d~~i~~~R~~ 181 (308)
T PRK06553 122 IEIFERLRDDGKPALIFTAHLGN---------WELLAIAAAAFG-----LDVTVLFRP------PNNPYAARKVLEARRT 181 (308)
T ss_pred HHHHHHHHhcCCCEEEEeeCchH---------HHHHHHHHHHcC-----CceEEEEec------CCChHHHHHHHHHHHH
Confidence 35678888888888888889998 777888776553 355555443 2344455566666666
Q ss_pred hCCC
Q 020098 158 LGLS 161 (331)
Q Consensus 158 Lg~d 161 (331)
.|..
T Consensus 182 ~g~~ 185 (308)
T PRK06553 182 TMGG 185 (308)
T ss_pred cCCC
Confidence 6644
No 339
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=25.27 E-value=1.5e+02 Score=28.95 Aligned_cols=61 Identities=7% Similarity=0.095 Sum_probs=44.1
Q ss_pred cHHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHHHHHcCCeEEEcccCccccccC
Q 020098 201 SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTG 262 (331)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~L~~ 262 (331)
+...++.+.+..+. +.+..++..+-||+..-..-..+.+.|+++|+.|+.-..++++.+..
T Consensus 148 d~~~~~~~~~~i~~-~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~~~ 208 (409)
T KOG0053|consen 148 DVDDLKKILKAIKE-NTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYNQD 208 (409)
T ss_pred chhhHHHHHHhhcc-CceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcccccC
Confidence 33445555444333 35677888899988876665569999999999999999999885543
No 340
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=25.01 E-value=5.6e+02 Score=23.73 Aligned_cols=111 Identities=13% Similarity=0.042 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHhh---CCCcccEEEeccCCC---CChHHHHH----HHHHHHHcCceeE---EEeecC-cHHHHHH
Q 020098 142 LGRQSVLAALKDSLFRL---GLSSVELYQLHWAGI---WGNEGFID----GLGDAVEQGLVKA---VGVSNY-SEKRLRN 207 (331)
Q Consensus 142 ~~~~~i~~~v~~sL~~L---g~d~iDl~~lh~p~~---~~~~~~~~----~L~~l~~~G~i~~---iGvs~~-~~~~l~~ 207 (331)
.+++.+.......+..+ |+.|+|+.+-..... .+.+++++ ++.+.+++-.|+. +++..+ +++.+++
T Consensus 65 ~t~e~l~~~~~~~~~e~~~~Gv~y~E~r~~p~~~~~~g~~~~~~~~~~~~~i~~a~~~~gi~~~li~~~~r~~~~~~~~~ 144 (324)
T TIGR01430 65 RTEDDFKRLAYEYVEKAAKDGVVYAEVFFDPQLHTNRGISPDTVVEAVLDGLDEAERDFGIKSRLILCGMRHKQPEAAEE 144 (324)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEEeCccccccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCHHHHHH
Q ss_pred HHHHHHhcCCC-eeeeeecccccccCccc-cchhHHHHHcCCeEEEc
Q 020098 208 AYEKLKKRGIP-LASNQVNYSLIYRKPEE-NGVKAACDELGITLIAY 252 (331)
Q Consensus 208 ~~~~~~~~~~~-~~~~q~~~n~~~~~~~~-~~~l~~~~~~gi~v~a~ 252 (331)
.++.+...+.. +..+-+..+......+. ..+++.|+++|+.+..+
T Consensus 145 ~~~~~~~~~~~~vvg~~l~~~e~~~~~~~~~~~~~~A~~~g~~i~~H 191 (324)
T TIGR01430 145 TLELAKPYKEQTIVGFGLAGDERGGPPPDFVRAFAIARELGLHLTVH 191 (324)
T ss_pred HHHHHHhhccCcEEEecCCCCCCCCCHHHHHHHHHHHHHCCCCeEEe
No 341
>PRK00588 rnpA ribonuclease P; Reviewed
Probab=24.94 E-value=2.7e+02 Score=22.03 Aligned_cols=62 Identities=13% Similarity=0.101 Sum_probs=42.8
Q ss_pred CCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCC---CcccEEEeccCCC--CChHHHHHHHHHHHHc
Q 020098 125 PEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL---SSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (331)
Q Consensus 125 ~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~---d~iDl~~lh~p~~--~~~~~~~~~L~~l~~~ 189 (331)
+|=.+.|+-|+|. ...+..+++.+.++.+.+.- ...|++++..+.. .+..++-+.|+.+.+.
T Consensus 43 ~R~G~~VsKKvG~---AV~RNRiKR~lRE~~R~~~~~l~~~~~vVviaR~~~~~~~~~~l~~~l~~ll~~ 109 (118)
T PRK00588 43 PRVGLIIAKSVGS---AVERHRVARRLRHVARPILKELHPSDRVVIRALPSSRHVSSARLEQQLRCGLRR 109 (118)
T ss_pred CEEEEEEeeecCc---hhHHHHHHHHHHHHHHHhhhccCCCCEEEEecCcccccCCHHHHHHHHHHHHHH
Confidence 3778999999874 56788888888888877642 2346666677654 4566666666666544
No 342
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=24.78 E-value=5.6e+02 Score=23.70 Aligned_cols=108 Identities=15% Similarity=0.042 Sum_probs=55.8
Q ss_pred HHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCC---CCCC----HHHHHHHH
Q 020098 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALP---WRLG----RQSVLAAL 151 (331)
Q Consensus 79 ~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~---~~~~----~~~i~~~v 151 (331)
+++++|++.|..+|.--....+ +..+ +.++.+. -.++|.-..|... .... -+.+.+.+
T Consensus 101 ~va~~AL~~GadiINDI~g~~d---------~~~~-~~~a~~~-----~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l 165 (282)
T PRK11613 101 EVIRESAKAGAHIINDIRSLSE---------PGAL-EAAAETG-----LPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYF 165 (282)
T ss_pred HHHHHHHHcCCCEEEECCCCCC---------HHHH-HHHHHcC-----CCEEEEcCCCCCCccccCCCcccHHHHHHHHH
Confidence 4678888889998842222112 3322 4455543 4566654433210 0111 22232333
Q ss_pred HHH---HHhhCCCcccEEEeccCCC----CChHHHHHHHHHHHHcCceeEEEeecCc
Q 020098 152 KDS---LFRLGLSSVELYQLHWAGI----WGNEGFIDGLGDAVEQGLVKAVGVSNYS 201 (331)
Q Consensus 152 ~~s---L~~Lg~d~iDl~~lh~p~~----~~~~~~~~~L~~l~~~G~i~~iGvs~~~ 201 (331)
++. +...|++.=++++=-.... ...-++++.|+++++-|.--.+|+|+=+
T Consensus 166 ~~~i~~a~~~GI~~~~IilDPGiGF~k~~~~n~~ll~~l~~l~~lg~Pilvg~SRKs 222 (282)
T PRK11613 166 IEQIARCEAAGIAKEKLLLDPGFGFGKNLSHNYQLLARLAEFHHFNLPLLVGMSRKS 222 (282)
T ss_pred HHHHHHHHHcCCChhhEEEeCCCCcCCCHHHHHHHHHHHHHHHhCCCCEEEEecccH
Confidence 333 4455776333332111111 1256788889999988988889999743
No 343
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=24.62 E-value=3.4e+02 Score=24.78 Aligned_cols=47 Identities=15% Similarity=0.022 Sum_probs=34.8
Q ss_pred CCcccEEEeccCCC----CChHHHHHHHHHHHHcCceeEEEeecCcHHHHHHH
Q 020098 160 LSSVELYQLHWAGI----WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNA 208 (331)
Q Consensus 160 ~d~iDl~~lh~p~~----~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~ 208 (331)
....|+++|.-|-. ....++++-|.+|+++|+. |=+.+|+...+.+.
T Consensus 155 ~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~t--Il~vtHDL~~v~~~ 205 (254)
T COG1121 155 AQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKT--VLMVTHDLGLVMAY 205 (254)
T ss_pred ccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCE--EEEEeCCcHHhHhh
Confidence 45678999988765 2356889999999999864 66777876665554
No 344
>PF13289 SIR2_2: SIR2-like domain
Probab=24.59 E-value=2.4e+02 Score=22.17 Aligned_cols=69 Identities=14% Similarity=0.110 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHcCceeEEEeecCcHHHHHHHHHHHHhcCCC--eeeeeecccccccCccccchhHHHHHcCCeEE
Q 020098 176 NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIP--LASNQVNYSLIYRKPEENGVKAACDELGITLI 250 (331)
Q Consensus 176 ~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~--~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~ 250 (331)
...++..|..+.....+-.||.|-.+. .+..+++.+...... ....-+..+ . .......+.++.||.+|
T Consensus 73 ~~~~~~~l~~~l~~~~~lfiGys~~D~-~i~~~l~~~~~~~~~~~~~~~~v~~~----~-~~~~~~~~~~~~~i~~I 143 (143)
T PF13289_consen 73 NPWFPNFLRSLLRSKTLLFIGYSFNDP-DIRQLLRSALENSGKSRPRHYIVIPD----P-DDENEREFLEKYGIEVI 143 (143)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCCCH-HHHHHHHHHHHhccCCCccEEEEEcC----C-chHHHHHHHHHcCCEEC
Confidence 356778888888889999999996554 555555444332211 111111111 1 11136788888898774
No 345
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=24.58 E-value=3.3e+02 Score=24.44 Aligned_cols=78 Identities=12% Similarity=0.231 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHcCc-eeEEEeecC------cHHHHHHHHHHHHhcCCCeeeeeeccccccc---Cc-cccchhHHHHHc
Q 020098 177 EGFIDGLGDAVEQGL-VKAVGVSNY------SEKRLRNAYEKLKKRGIPLASNQVNYSLIYR---KP-EENGVKAACDEL 245 (331)
Q Consensus 177 ~~~~~~L~~l~~~G~-i~~iGvs~~------~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~---~~-~~~~~l~~~~~~ 245 (331)
....+.+++|++.|. |..||+-.| ++..+...++.....|.++.+-.+.+..... +. .-..+++.|.++
T Consensus 136 ~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~l~~~~~~g~pi~iTE~dv~~~~~~~~qA~~~~~~l~~~~~~ 215 (254)
T smart00633 136 QAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAALDRFASLGLEIQITELDISGYPNPQAQAADYEEVFKACLAH 215 (254)
T ss_pred HHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEeecCCCCcHHHHHHHHHHHHHHHHcC
Confidence 466888899999988 899998654 4567777777666666666555444443211 00 012588888887
Q ss_pred C--CeEEEccc
Q 020098 246 G--ITLIAYCP 254 (331)
Q Consensus 246 g--i~v~a~s~ 254 (331)
. .+|+-|+-
T Consensus 216 p~v~gi~~Wg~ 226 (254)
T smart00633 216 PAVTGVTVWGV 226 (254)
T ss_pred CCeeEEEEeCC
Confidence 4 56666643
No 346
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=24.19 E-value=3.6e+02 Score=24.15 Aligned_cols=67 Identities=18% Similarity=0.114 Sum_probs=46.0
Q ss_pred CCCCHHHHHHHHHHHHHhhCC--------------------------CcccEEEeccCCC----CChHHHHHHHHHHHHc
Q 020098 140 WRLGRQSVLAALKDSLFRLGL--------------------------SSVELYQLHWAGI----WGNEGFIDGLGDAVEQ 189 (331)
Q Consensus 140 ~~~~~~~i~~~v~~sL~~Lg~--------------------------d~iDl~~lh~p~~----~~~~~~~~~L~~l~~~ 189 (331)
++.++..+++.+++.-++|+. ...+++.+.-|.. .....+.+.+.+++.+
T Consensus 103 ~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~e 182 (245)
T COG4555 103 NGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNE 182 (245)
T ss_pred hhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcC
Confidence 346677778888888777763 2234444444433 1246788899999999
Q ss_pred CceeEEEeecCcHHHHHHH
Q 020098 190 GLVKAVGVSNYSEKRLRNA 208 (331)
Q Consensus 190 G~i~~iGvs~~~~~~l~~~ 208 (331)
|++ |=+|+|..+.++.+
T Consensus 183 gr~--viFSSH~m~Eveal 199 (245)
T COG4555 183 GRA--VIFSSHIMQEVEAL 199 (245)
T ss_pred CcE--EEEecccHHHHHHh
Confidence 955 77899987777777
No 347
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=24.12 E-value=5.8e+02 Score=23.60 Aligned_cols=124 Identities=16% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCcccEEEeccCCC----CChHHHHHHHHHHHH--cCceeEE-EeecCcHHHHHHHHHHHHhcCCC-e
Q 020098 148 LAALKDSLFRLGLSSVELYQLHWAGI----WGNEGFIDGLGDAVE--QGLVKAV-GVSNYSEKRLRNAYEKLKKRGIP-L 219 (331)
Q Consensus 148 ~~~v~~sL~~Lg~d~iDl~~lh~p~~----~~~~~~~~~L~~l~~--~G~i~~i-Gvs~~~~~~l~~~~~~~~~~~~~-~ 219 (331)
.+.+++..+.|--.-+|-+++-.-.- ...+|-.+.++..++ .|++.-| |++. +.....++.+.++..|.. .
T Consensus 27 ~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav 105 (303)
T PRK03620 27 EAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAAERAGADGI 105 (303)
T ss_pred HHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHHHHhCCCEE
Q ss_pred eeeeecccccccCccccchhHHHHHcCCeEEEcccCccccccCCCCCCCCCCCCCCCccchhHHhhHHHHHHHHHHHHHh
Q 020098 220 ASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGEN 299 (331)
Q Consensus 220 ~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~la~~ 299 (331)
.+....|.......-..-..+.|...++.++.|. ..| ..++++ .+.+++++
T Consensus 106 ~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn--~~g-----------------~~l~~~----------~l~~L~~~ 156 (303)
T PRK03620 106 LLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYN--RDN-----------------AVLTAD----------TLARLAER 156 (303)
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEc--CCC-----------------CCCCHH----------HHHHHHhh
Q ss_pred cC
Q 020098 300 YS 301 (331)
Q Consensus 300 ~g 301 (331)
+.
T Consensus 157 ~p 158 (303)
T PRK03620 157 CP 158 (303)
T ss_pred CC
No 348
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=24.08 E-value=2.2e+02 Score=27.84 Aligned_cols=168 Identities=14% Similarity=0.093 Sum_probs=86.6
Q ss_pred HCCCCeEECCcCcC---CCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCc
Q 020098 86 DNGITFFDTAEVYG---SRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSS 162 (331)
Q Consensus 86 ~~Gvn~~Dta~~Yg---~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d~ 162 (331)
+.|-+|+|....|+ -|++ ...+-++|+... ++++.++... ..+...+-.+...+..+ .
T Consensus 39 ~~G~~YlDf~~Giav~~lGH~------hP~iv~al~~Q~-----~kl~h~sn~~------~~~~~~~la~~L~~~s~--~ 99 (404)
T COG4992 39 QQGREYLDFAAGIAVNNLGHC------HPALVEALKEQA-----EKLWHVSNLF------YNEPQAELAEKLVELSP--F 99 (404)
T ss_pred CCCCEeeeeccceeeeccCCC------CHHHHHHHHHHH-----HHhhhccccc------CChHHHHHHHHHHhhCc--c
Confidence 45788999887775 3555 777888888753 6777776662 12222222333333334 3
Q ss_pred ccEEEeccCCCCChHHHHHHHHHHHH-cCceeEEEeec-CcHHHHHHHH-----HHHHhcC-CCeeeeeecccccccCcc
Q 020098 163 VELYQLHWAGIWGNEGFIDGLGDAVE-QGLVKAVGVSN-YSEKRLRNAY-----EKLKKRG-IPLASNQVNYSLIYRKPE 234 (331)
Q Consensus 163 iDl~~lh~p~~~~~~~~~~~L~~l~~-~G~i~~iGvs~-~~~~~l~~~~-----~~~~~~~-~~~~~~q~~~n~~~~~~~ 234 (331)
.|-+++-+.....++..++.-...-. .+|-+-|.+.| |....+-.+- ++-+... ..+.+.+++||-.+
T Consensus 100 ~d~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfnDi~---- 175 (404)
T COG4992 100 ADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFNDIE---- 175 (404)
T ss_pred ccEEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCCCHH----
Confidence 77788777654445555554444443 33444455443 2111110000 0001111 24567777777543
Q ss_pred ccchhHHHHHcCCeEEEcccCcc--ccccCCCCCCCCCCCCCCCccchhHHhhHHHHHHHHHHHHHhcCC
Q 020098 235 ENGVKAACDELGITLIAYCPIAQ--GALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSK 302 (331)
Q Consensus 235 ~~~~l~~~~~~gi~v~a~s~l~~--G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~ 302 (331)
-++.+-..++.-+...|.-+ |+. .+ -...+..++++|++||+
T Consensus 176 ---al~~ai~~~taAvivEPIQGEgGV~------------------~~-----~~~fl~~lr~lCd~~g~ 219 (404)
T COG4992 176 ---ALEAAIDEDTAAVIVEPIQGEGGVI------------------PA-----PPEFLKALRELCDEHGA 219 (404)
T ss_pred ---HHHHHhccCeEEEEEecccCCCCCC------------------CC-----CHHHHHHHHHHHHHhCe
Confidence 23333333666666666654 221 00 12344578999999874
No 349
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=24.07 E-value=4.4e+02 Score=25.46 Aligned_cols=29 Identities=28% Similarity=0.285 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcccEEEec
Q 020098 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLH 169 (331)
Q Consensus 140 ~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh 169 (331)
...+.+.+++.++..++ |+.++|.+|.+.
T Consensus 172 Pgqt~e~~~~~l~~~~~-l~p~his~y~L~ 200 (390)
T PRK06582 172 SGQTLKDWQEELKQAMQ-LATSHISLYQLT 200 (390)
T ss_pred CCCCHHHHHHHHHHHHh-cCCCEEEEecCE
Confidence 45677788888888775 788888888775
No 350
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=24.02 E-value=5.6e+02 Score=23.46 Aligned_cols=32 Identities=9% Similarity=0.070 Sum_probs=24.3
Q ss_pred CchhhHHHHHHHHHHHHH-CCCCeEECCcCcCC
Q 020098 69 WDDRKMKAAKAAFDTSLD-NGITFFDTAEVYGS 100 (331)
Q Consensus 69 ~~~~~~~~~~~~l~~A~~-~Gvn~~Dta~~Yg~ 100 (331)
.+.++.+...++++..++ .|++-|=..-..|-
T Consensus 18 dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE 50 (293)
T PRK04147 18 DGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGE 50 (293)
T ss_pred CCCcCHHHHHHHHHHHHhcCCCCEEEECCCccc
Confidence 356888999999999999 99996655444443
No 351
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=24.00 E-value=5.7e+02 Score=24.99 Aligned_cols=89 Identities=15% Similarity=0.131 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 020098 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (331)
Q Consensus 73 ~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~ 152 (331)
+.++..+.++.+-+.|+..+...=.||- ...+.+.+.+.++
T Consensus 175 ~~~~~~~ai~~l~~~g~~~i~~dlI~Gl---------------------------------------P~qt~e~~~~~l~ 215 (430)
T PRK08208 175 KRADVHQALEWIRAAGFPILNIDLIYGI---------------------------------------PGQTHASWMESLD 215 (430)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeecCC---------------------------------------CCCCHHHHHHHHH
Q ss_pred HHHHhhCCCcccEEEeccCCCCC-----------hHHHHHHHHHHHHcCceeEEEeecCc
Q 020098 153 DSLFRLGLSSVELYQLHWAGIWG-----------NEGFIDGLGDAVEQGLVKAVGVSNYS 201 (331)
Q Consensus 153 ~sL~~Lg~d~iDl~~lh~p~~~~-----------~~~~~~~L~~l~~~G~i~~iGvs~~~ 201 (331)
..+ +|+.++|.++.+.-....+ ..+.++...+.-.+.--..+++++|.
T Consensus 216 ~~~-~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy~~yei~~fa 274 (430)
T PRK08208 216 QAL-VYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGYTQTSMRMFR 274 (430)
T ss_pred HHH-hCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCCeEEeeccee
No 352
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=23.73 E-value=2.3e+02 Score=23.34 Aligned_cols=103 Identities=18% Similarity=0.143 Sum_probs=54.6
Q ss_pred eeEEEeecCcHHHHH-HHHHHHHhcCCCeeeeeecccccccC------cc-----ccchhHHH--HHcCCeEEEcccCcc
Q 020098 192 VKAVGVSNYSEKRLR-NAYEKLKKRGIPLASNQVNYSLIYRK------PE-----ENGVKAAC--DELGITLIAYCPIAQ 257 (331)
Q Consensus 192 i~~iGvs~~~~~~l~-~~~~~~~~~~~~~~~~q~~~n~~~~~------~~-----~~~~l~~~--~~~gi~v~a~s~l~~ 257 (331)
|...|+++.+...+. .+............++++-.|-+... .+ -..+++.+ +..+..|+..+|+..
T Consensus 36 v~n~g~~G~t~~~~~~~~~~~~~~~~~d~v~l~~G~ND~~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~ii~~~p~~~ 115 (191)
T cd01834 36 FRNLGWSGDTVSDLAARRDRDVLPAKPDVVSIMFGINDSFRGFDDPVGLEKFKTNLRRLIDRLKNKESAPRIVLVSPIAY 115 (191)
T ss_pred EEEcccCccchhhhhhhhhcccccCCCCEEEEEeecchHhhcccccccHHHHHHHHHHHHHHHHcccCCCcEEEECCccc
Confidence 456788887666554 22221112223345555555544432 10 02477878 456888888777653
Q ss_pred ccccCCCCCCCCCCCCCCCccchhHHhhHHHHHHHHHHHHHhcCCCHHH
Q 020098 258 GALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQ 306 (331)
Q Consensus 258 G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~q 306 (331)
.... .+ ...............+.++++|+++++....
T Consensus 116 ~~~~-------~~-----~~~~~~~~~~~~~~n~~l~~~a~~~~~~~iD 152 (191)
T cd01834 116 EANE-------DP-----LPDGAEYNANLAAYADAVRELAAENGVAFVD 152 (191)
T ss_pred CCCC-------CC-----CCChHHHHHHHHHHHHHHHHHHHHcCCeEEe
Confidence 2110 00 0012333445566667899999999875443
No 353
>PRK15108 biotin synthase; Provisional
Probab=23.67 E-value=6.4e+02 Score=23.93 Aligned_cols=126 Identities=13% Similarity=0.114 Sum_probs=67.4
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 020098 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (331)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v 151 (331)
.+.++..+....+.+.|++-|-......+... ..-+.+-+.++...+ ..+.++.-.| ..+.+.++
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~----~~~e~i~~~i~~ik~----~~i~v~~s~G----~ls~e~l~--- 140 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHE----RDMPYLEQMVQGVKA----MGLETCMTLG----TLSESQAQ--- 140 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCc----chHHHHHHHHHHHHh----CCCEEEEeCC----cCCHHHHH---
Confidence 67799999999999999998843222111100 013566666665531 1233332233 24433332
Q ss_pred HHHHHhhCCCcccEEEeccCCC-------CChHHHHHHHHHHHHcCcee----EEEeecCcHHHHHHHHHHHHhc
Q 020098 152 KDSLFRLGLSSVELYQLHWAGI-------WGNEGFIDGLGDAVEQGLVK----AVGVSNYSEKRLRNAYEKLKKR 215 (331)
Q Consensus 152 ~~sL~~Lg~d~iDl~~lh~p~~-------~~~~~~~~~L~~l~~~G~i~----~iGvs~~~~~~l~~~~~~~~~~ 215 (331)
-|+..|+|++.+-+=-.|.. ...++.++.++.+++.|.-- -+|+ +.+.++..+.+..+...
T Consensus 141 --~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~Gl-gEt~ed~v~~~~~l~~l 212 (345)
T PRK15108 141 --RLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGL-GETVKDRAGLLLQLANL 212 (345)
T ss_pred --HHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeC-CCCHHHHHHHHHHHHhc
Confidence 35666777654322111111 24678999999999999632 3444 33444444444334433
No 354
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=23.55 E-value=1.5e+02 Score=26.74 Aligned_cols=87 Identities=9% Similarity=-0.052 Sum_probs=49.5
Q ss_pred ccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHHH
Q 020098 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAAC 242 (331)
Q Consensus 163 iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~ 242 (331)
.++.++..|-+ .+-++.+.++. .+.--..|=|-++.+.+.++++. ...+++|+...-.-.-.+-..+.+.|
T Consensus 153 ~~i~~iEqP~~---~~d~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~-----~~~d~v~~k~~~~GGit~~~~i~~~a 223 (263)
T cd03320 153 GRIEYIEQPLP---PDDLAELRRLA-AGVPIALDESLRRLDDPLALAAA-----GALGALVLKPALLGGPRALLELAEEA 223 (263)
T ss_pred cCCceEECCCC---hHHHHHHHHhh-cCCCeeeCCccccccCHHHHHhc-----CCCCEEEECchhcCCHHHHHHHHHHH
Confidence 35555555543 22355555555 33333555555666666666543 34666666655332111112488999
Q ss_pred HHcCCeEEEcccCccc
Q 020098 243 DELGITLIAYCPIAQG 258 (331)
Q Consensus 243 ~~~gi~v~a~s~l~~G 258 (331)
+.+|+.+...+-+..+
T Consensus 224 ~~~gi~~~~~~~~es~ 239 (263)
T cd03320 224 RARGIPAVVSSALESS 239 (263)
T ss_pred HHcCCCEEEEcchhhH
Confidence 9999999887655544
No 355
>cd08620 PI-PLCXDc_like_1 Catalytic domain of uncharacterized hypothetical proteins similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins. This subfamily corresponds to the catalytic domain present in a group of uncharacterized hypothetical proteins found in bacteria and fungi, which are similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins (PI-PLCXD). The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, eukaryotic PI-PLCXDs contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidyl
Probab=23.47 E-value=2.4e+02 Score=26.15 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=13.3
Q ss_pred HHHHHHCCCCeEECCcCc
Q 020098 81 FDTSLDNGITFFDTAEVY 98 (331)
Q Consensus 81 l~~A~~~Gvn~~Dta~~Y 98 (331)
+..=++.|||+||-=..|
T Consensus 36 i~~QL~~GiRyfDlRv~~ 53 (281)
T cd08620 36 VSTQLALGARYFDFRPGY 53 (281)
T ss_pred HHHHHhcCcEEEEEEeee
Confidence 556679999999974433
No 356
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=23.46 E-value=2.8e+02 Score=27.89 Aligned_cols=25 Identities=12% Similarity=0.230 Sum_probs=16.9
Q ss_pred HHHHHHHHhhCCCcccEEEeccCCC
Q 020098 149 AALKDSLFRLGLSSVELYQLHWAGI 173 (331)
Q Consensus 149 ~~v~~sL~~Lg~d~iDl~~lh~p~~ 173 (331)
+.|.+.|+.|-...+.++--|-.|.
T Consensus 198 ~~IkrtLeaMa~nKLNVlHWHivDs 222 (542)
T KOG2499|consen 198 KVIKRTLEAMAANKLNVLHWHIVDS 222 (542)
T ss_pred HHHHHHHHHHHhhhhceeEEEeecC
Confidence 4566667777777777776666665
No 357
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=23.46 E-value=3.2e+02 Score=22.65 Aligned_cols=32 Identities=22% Similarity=0.154 Sum_probs=26.4
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCC
Q 020098 127 VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL 160 (331)
Q Consensus 127 ~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~ 160 (331)
.++++..|-+. ...+...+++++...|++++.
T Consensus 86 ~DiVviar~~~--~~~~~~~l~~~l~~LL~k~~~ 117 (145)
T PRK04820 86 GDYVVVARSAA--AKASNPQLRDAFLRLLRRAGA 117 (145)
T ss_pred CCEEEEEeCCc--ccCCHHHHHHHHHHHHHHhCc
Confidence 47788888765 567899999999999999875
No 358
>PTZ00081 enolase; Provisional
Probab=23.43 E-value=4.4e+02 Score=26.13 Aligned_cols=98 Identities=12% Similarity=0.057 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcC--ceeEEEee--cCcHHHHHHHHHHHHhcCC
Q 020098 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG--LVKAVGVS--NYSEKRLRNAYEKLKKRGI 217 (331)
Q Consensus 142 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G--~i~~iGvs--~~~~~~l~~~~~~~~~~~~ 217 (331)
.+.+.+.+-+.+.++.+ ++++|..|-.... |+.+.+|.++= +|.-+|=- ..+++.+.++++. -
T Consensus 281 ~s~~eli~~~~~~l~~y-----~I~~IEDPl~~~D---~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~-----~ 347 (439)
T PTZ00081 281 LTGEELVELYLDLVKKY-----PIVSIEDPFDQDD---WEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEK-----K 347 (439)
T ss_pred cCHHHHHHHHHHHHhcC-----CcEEEEcCCCccc---HHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHh-----C
Confidence 45555555555555544 4677777754333 55555555543 55545532 3457888888664 3
Q ss_pred CeeeeeecccccccCccccchhHHHHHcCCeEEEc
Q 020098 218 PLASNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (331)
Q Consensus 218 ~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~ 252 (331)
..+++|+..|-.-.-.+-.++...|+++|+.++..
T Consensus 348 aad~i~iKvnqiGGITe~l~~a~lA~~~Gi~~iis 382 (439)
T PTZ00081 348 ACNALLLKVNQIGTVTEAIEAAKLAQKNGWGVMVS 382 (439)
T ss_pred CCCEEEeccccccCHHHHHHHHHHHHHcCCcEEEe
Confidence 46777777764432222225889999999998873
No 359
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=23.41 E-value=3.4e+02 Score=24.28 Aligned_cols=76 Identities=18% Similarity=0.193 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHc-CceeEEEeecC-----cHHHHHHHHHHHHhcCCCeeeeeecccccccCcc-----ccchhHHHHH
Q 020098 176 NEGFIDGLGDAVEQ-GLVKAVGVSNY-----SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPE-----ENGVKAACDE 244 (331)
Q Consensus 176 ~~~~~~~L~~l~~~-G~i~~iGvs~~-----~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~-----~~~~l~~~~~ 244 (331)
++.+.++++.+++. |++-.+|+.+. ..+++..+++.+...|++.+++..-.-=-+..+. -..+.+.|++
T Consensus 13 n~~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~~yl~~l~~~l~~ 92 (223)
T PF06415_consen 13 NPVLLEAIEHAKKNGGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDGRDTPPKSALKYLEELEEKLAE 92 (223)
T ss_dssp SHHHHHHHHHHCCTT--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCcchHHHHHHHHHHHHHh
Confidence 45666777777755 55677887753 2578888888888887765544332211111111 1247788888
Q ss_pred cCCeEEE
Q 020098 245 LGITLIA 251 (331)
Q Consensus 245 ~gi~v~a 251 (331)
.|++-+|
T Consensus 93 ~~~g~IA 99 (223)
T PF06415_consen 93 IGIGRIA 99 (223)
T ss_dssp HTCTEEE
T ss_pred hCCceEE
Confidence 8887665
No 360
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=23.34 E-value=5.9e+02 Score=23.44 Aligned_cols=105 Identities=12% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCcccEEEeccCCC----CChHHHHHHHHHHHH--cCceeEE-EeecCcHHHHHHHHHHHHhcCCCee
Q 020098 148 LAALKDSLFRLGLSSVELYQLHWAGI----WGNEGFIDGLGDAVE--QGLVKAV-GVSNYSEKRLRNAYEKLKKRGIPLA 220 (331)
Q Consensus 148 ~~~v~~sL~~Lg~d~iDl~~lh~p~~----~~~~~~~~~L~~l~~--~G~i~~i-Gvs~~~~~~l~~~~~~~~~~~~~~~ 220 (331)
.+.+++-++.+--.-+|-+++-.-.- ...+|-.+.++..++ .|++.-| |++..+.+...++.+.++..|..-.
T Consensus 20 ~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v 99 (294)
T TIGR02313 20 EEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAA 99 (294)
T ss_pred HHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEE
Q ss_pred eeeec-ccccccCccccchhHHHHHc-CCeEEEc
Q 020098 221 SNQVN-YSLIYRKPEENGVKAACDEL-GITLIAY 252 (331)
Q Consensus 221 ~~q~~-~n~~~~~~~~~~~l~~~~~~-gi~v~a~ 252 (331)
++..+ |....+..-..-....|..- ++.++.|
T Consensus 100 ~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iY 133 (294)
T TIGR02313 100 MVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIY 133 (294)
T ss_pred EEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEE
No 361
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=23.34 E-value=2.6e+02 Score=24.57 Aligned_cols=88 Identities=18% Similarity=0.228 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecC-cHHHHHHHHHHHHhcCCCeee
Q 020098 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLAS 221 (331)
Q Consensus 143 ~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~-~~~~l~~~~~~~~~~~~~~~~ 221 (331)
+.+... .+-+.|-+-|++.+-+ -+ ...+..+.+++++++..=-.||..+. +.++++.+++. |-.|.+
T Consensus 18 ~~e~a~-~~~~al~~~Gi~~iEi---t~----~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~a----GA~Fiv 85 (204)
T TIGR01182 18 DVDDAL-PLAKALIEGGLRVLEV---TL----RTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDA----GAQFIV 85 (204)
T ss_pred CHHHHH-HHHHHHHHcCCCEEEE---eC----CCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHc----CCCEEE
Confidence 344443 3444566667654443 22 22445666666766533245888876 78888888654 334542
Q ss_pred eeecccccccCccccchhHHHHHcCCeEEE
Q 020098 222 NQVNYSLIYRKPEENGVKAACDELGITLIA 251 (331)
Q Consensus 222 ~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a 251 (331)
++.. . .+++++|+++||.++.
T Consensus 86 -----sP~~---~-~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 86 -----SPGL---T-PELAKHAQDHGIPIIP 106 (204)
T ss_pred -----CCCC---C-HHHHHHHHHcCCcEEC
Confidence 2211 1 1599999999998876
No 362
>PRK00038 rnpA ribonuclease P; Reviewed
Probab=23.23 E-value=3.9e+02 Score=21.36 Aligned_cols=62 Identities=10% Similarity=0.153 Sum_probs=40.7
Q ss_pred CCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCC--CcccEEEeccCCC--CChHHH----HHHHHHHHH
Q 020098 125 PEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL--SSVELYQLHWAGI--WGNEGF----IDGLGDAVE 188 (331)
Q Consensus 125 ~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~--d~iDl~~lh~p~~--~~~~~~----~~~L~~l~~ 188 (331)
+|=.+.|+-|++. ....+..|++.+.++.+.... ...|++++-.+.. .+..++ .+.|++|.+
T Consensus 50 ~RlGi~VsKKv~g--~AV~RNRiKR~lRE~~R~~~~~l~~~D~VviaR~~~~~~~~~~l~~~~~~~~~~l~~ 119 (123)
T PRK00038 50 ARLGLVIAKRFAA--RAVTRNTLKRVIREAFRARRLALPAQDYVVRLHSKLTPASLTALKRSARAEVDAHFT 119 (123)
T ss_pred ceEEEEEecccCC--CchhHHHHHHHHHHHHHHhhccCCCCCEEEEECCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 4788999999632 356788888888888877532 2359988876554 334444 555665543
No 363
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=23.06 E-value=4e+02 Score=26.00 Aligned_cols=121 Identities=14% Similarity=0.199 Sum_probs=67.6
Q ss_pred HHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 020098 77 AKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLF 156 (331)
Q Consensus 77 ~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~ 156 (331)
..+-=-+|+|-|+--+-|| .| ...+--++-..... -|.++-++++ +..+. ..+..+|+
T Consensus 66 vlE~RiAaLEGG~aa~a~a----SG--------~AA~~~ai~~la~a--GD~iVss~~L----YGGT~----~lf~~tl~ 123 (426)
T COG2873 66 VLEERIAALEGGVAALAVA----SG--------QAAITYAILNLAGA--GDNIVSSSKL----YGGTY----NLFSHTLK 123 (426)
T ss_pred HHHHHHHHhhcchhhhhhc----cc--------hHHHHHHHHHhccC--CCeeEeeccc----cCchH----HHHHHHHH
Confidence 3344457889999888776 33 22333444443322 2788888888 44433 56778899
Q ss_pred hhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecCcHHHHHHHHHHHHhcCCCeeeeeec
Q 020098 157 RLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVN 225 (331)
Q Consensus 157 ~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~ 225 (331)
++|++ .-++...+ .+++-+++++=-+.=.+..||=-....-.++.+.+++.+++++..+-.+-
T Consensus 124 ~~Gi~---v~fvd~~d---~~~~~~aI~~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~ 186 (426)
T COG2873 124 RLGIE---VRFVDPDD---PENFEAAIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTF 186 (426)
T ss_pred hcCcE---EEEeCCCC---HHHHHHHhCcccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCC
Confidence 99954 33333322 23332222222222223344433445566777878788888887764433
No 364
>PRK07094 biotin synthase; Provisional
Probab=23.01 E-value=6.1e+02 Score=23.46 Aligned_cols=127 Identities=17% Similarity=0.106 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 020098 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (331)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v 151 (331)
.+.++..+.++.+.+.|++.|-.......-.. .+.+-+.++.... +.++.+..-.+ ..+.+.+
T Consensus 70 ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~~------~~~l~~l~~~i~~---~~~l~i~~~~g----~~~~e~l---- 132 (323)
T PRK07094 70 LSPEEILECAKKAYELGYRTIVLQSGEDPYYT------DEKIADIIKEIKK---ELDVAITLSLG----ERSYEEY---- 132 (323)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCC------HHHHHHHHHHHHc---cCCceEEEecC----CCCHHHH----
Confidence 36788888899999999997753211100001 3445555555431 12343332222 2333322
Q ss_pred HHHHHhhCCCcccEEEeccCC---------CCChHHHHHHHHHHHHcCce----eEEEeecCcHHHHHHHHHHHHhcCC
Q 020098 152 KDSLFRLGLSSVELYQLHWAG---------IWGNEGFIDGLGDAVEQGLV----KAVGVSNYSEKRLRNAYEKLKKRGI 217 (331)
Q Consensus 152 ~~sL~~Lg~d~iDl~~lh~p~---------~~~~~~~~~~L~~l~~~G~i----~~iGvs~~~~~~l~~~~~~~~~~~~ 217 (331)
+.|++.|.+.+.+ -+...+ ....++.+++++.+++.|.- --+|+.+.+.+.+.+.++.+...+.
T Consensus 133 -~~Lk~aG~~~v~~-glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~~ 209 (323)
T PRK07094 133 -KAWKEAGADRYLL-RHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKELDL 209 (323)
T ss_pred -HHHHHcCCCEEEe-ccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHHHHhCCC
Confidence 3456667665442 111111 13467888999999999862 2356666777888887777665543
No 365
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=22.96 E-value=1.1e+02 Score=31.26 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=27.8
Q ss_pred cchhHHhhHHHHHHHHHHHHHhcCCCHHHHHH
Q 020098 278 YTAEYLRNLQPLLNRIKELGENYSKTSTQNSP 309 (331)
Q Consensus 278 ~~~~~~~~~~~~~~~l~~la~~~g~s~~qval 309 (331)
+.|..++....++..++.+++|||.++..+.-
T Consensus 294 ~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~ 325 (557)
T COG0497 294 FDPNRLEEVEERLFALKSLARKYGVTIEDLLE 325 (557)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 56777888999999999999999999988753
No 366
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.84 E-value=2.4e+02 Score=24.76 Aligned_cols=88 Identities=16% Similarity=0.230 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecC-cHHHHHHHHHHHHhcCCCeee
Q 020098 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLAS 221 (331)
Q Consensus 143 ~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~-~~~~l~~~~~~~~~~~~~~~~ 221 (331)
+.+...+- -+.|.+-|+..+-+ -+ ...+..+.+++++++..=-.||..+. +.++++++++. |-.|.+
T Consensus 14 ~~~~a~~i-a~al~~gGi~~iEi---t~----~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~a----GA~Fiv 81 (201)
T PRK06015 14 DVEHAVPL-ARALAAGGLPAIEI---TL----RTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKA----GSRFIV 81 (201)
T ss_pred CHHHHHHH-HHHHHHCCCCEEEE---eC----CCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHc----CCCEEE
Confidence 44444433 34455556554443 22 22345566666665533245888876 77888887654 334443
Q ss_pred eeecccccccCccccchhHHHHHcCCeEEE
Q 020098 222 NQVNYSLIYRKPEENGVKAACDELGITLIA 251 (331)
Q Consensus 222 ~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a 251 (331)
++ ... .+++++|+++||.++.
T Consensus 82 -----SP---~~~-~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 82 -----SP---GTT-QELLAAANDSDVPLLP 102 (201)
T ss_pred -----CC---CCC-HHHHHHHHHcCCCEeC
Confidence 12 111 2599999999998875
No 367
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=22.82 E-value=5.2e+02 Score=24.91 Aligned_cols=86 Identities=10% Similarity=-0.001 Sum_probs=56.1
Q ss_pred EEEeccCCCCCh-HHHHHHHHHHHHc------CceeEEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccCccccc
Q 020098 165 LYQLHWAGIWGN-EGFIDGLGDAVEQ------GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENG 237 (331)
Q Consensus 165 l~~lh~p~~~~~-~~~~~~L~~l~~~------G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ 237 (331)
++++..|-+... ++-++.+.+|.+. +.--..|-+.++.+.+.++++. -..+++|+..+-.-.-.+-..
T Consensus 229 ~~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~-----~a~div~~kl~k~GGIt~a~k 303 (369)
T cd03314 229 PLRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADA-----GAAHMVQIKTPDLGGIDNTID 303 (369)
T ss_pred cEEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHh-----CCCCEEEecchhcCCHHHHHH
Confidence 456777653211 2446777777766 3334566677788888888654 457778877765432222225
Q ss_pred hhHHHHHcCCeEEEcccC
Q 020098 238 VKAACDELGITLIAYCPI 255 (331)
Q Consensus 238 ~l~~~~~~gi~v~a~s~l 255 (331)
+.++|+.+||.++..+..
T Consensus 304 ia~lA~a~Gi~~~~h~~~ 321 (369)
T cd03314 304 AVLYCKEHGVGAYLGGSC 321 (369)
T ss_pred HHHHHHHcCCcEEEeCCC
Confidence 899999999999987543
No 368
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=22.76 E-value=6e+02 Score=23.32 Aligned_cols=69 Identities=10% Similarity=0.124 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHHh---hCCCcccEEEeccCC--CCChHHHHHHHHHHHHcCceeEEEeecC----cHHHHHHHHHHHH
Q 020098 143 GRQSVLAALKDSLFR---LGLSSVELYQLHWAG--IWGNEGFIDGLGDAVEQGLVKAVGVSNY----SEKRLRNAYEKLK 213 (331)
Q Consensus 143 ~~~~i~~~v~~sL~~---Lg~d~iDl~~lh~p~--~~~~~~~~~~L~~l~~~G~i~~iGvs~~----~~~~l~~~~~~~~ 213 (331)
+++.+.+.+.+..+. .|. ++.+...++.. ..+.+.+.+..+.+.+.| +..|.++.. +|+++.++++...
T Consensus 109 t~~e~l~~~~~~i~~a~~~G~-~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G-~~~i~l~DT~G~~~P~~v~~l~~~l~ 186 (280)
T cd07945 109 TPEEHFADIREVIEYAIKNGI-EVNIYLEDWSNGMRDSPDYVFQLVDFLSDLP-IKRIMLPDTLGILSPFETYTYISDMV 186 (280)
T ss_pred CHHHHHHHHHHHHHHHHhCCC-EEEEEEEeCCCCCcCCHHHHHHHHHHHHHcC-CCEEEecCCCCCCCHHHHHHHHHHHH
Confidence 444444444444432 343 35555555322 234566666677777766 556766653 4666666665543
No 369
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=22.72 E-value=6.4e+02 Score=23.66 Aligned_cols=128 Identities=13% Similarity=0.092 Sum_probs=72.7
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 020098 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (331)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~ 150 (331)
.++.++..++++.+.+.|+..|.-+ | |+-+ .+ .. +-+.++..... .-.+.|+|-. ...+.+.+
T Consensus 36 ~l~~e~~~~ii~~~~~~g~~~v~~~---G-GEPl-l~--~~-~~~ii~~~~~~--g~~~~l~TNG----~ll~~e~~--- 98 (358)
T TIGR02109 36 ELTTEEWTDVLTQAAELGVLQLHFS---G-GEPL-AR--PD-LVELVAHARRL--GLYTNLITSG----VGLTEARL--- 98 (358)
T ss_pred CCCHHHHHHHHHHHHhcCCcEEEEe---C-cccc-cc--cc-HHHHHHHHHHc--CCeEEEEeCC----ccCCHHHH---
Confidence 4667889999999999998877642 2 3111 01 11 22333332211 1245666664 23444433
Q ss_pred HHHHHHhhCCCcccEEEeccCCC---------C-ChHHHHHHHHHHHHcCce--eEEEeecCcHHHHHHHHHHHHhcCCC
Q 020098 151 LKDSLFRLGLSSVELYQLHWAGI---------W-GNEGFIDGLGDAVEQGLV--KAVGVSNYSEKRLRNAYEKLKKRGIP 218 (331)
Q Consensus 151 v~~sL~~Lg~d~iDl~~lh~p~~---------~-~~~~~~~~L~~l~~~G~i--~~iGvs~~~~~~l~~~~~~~~~~~~~ 218 (331)
+.|...|++.|. +-|+.+++ . ..+.+++.++.+++.|.- -.+-++..+.+++.++++.+...+..
T Consensus 99 --~~L~~~g~~~v~-iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~vv~~~N~~~l~~~~~~~~~lg~~ 175 (358)
T TIGR02109 99 --DALADAGLDHVQ-LSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNFVIHRHNIDQIPEIIELAIELGAD 175 (358)
T ss_pred --HHHHhCCCCEEE-EeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHHHHHcCCC
Confidence 234455655443 33444432 1 145678888889888842 12345667788898888888877754
No 370
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=22.70 E-value=5.3e+02 Score=22.71 Aligned_cols=117 Identities=11% Similarity=0.001 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCC--------CCC--cEEEEecCCCCCCCCCH
Q 020098 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRD--------PEV--EVTVATKFAALPWRLGR 144 (331)
Q Consensus 75 ~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~--------~R~--~~~i~tK~~~~~~~~~~ 144 (331)
+++.+++ +.|+..+..+...-.. -..+.++.+..+.+. .|. +..|.++.|......+.
T Consensus 84 ~d~~~~l----~~G~~~v~ig~~~~~~--------p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~ 151 (243)
T cd04731 84 EDARRLL----RAGADKVSINSAAVEN--------PELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDA 151 (243)
T ss_pred HHHHHHH----HcCCceEEECchhhhC--------hHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCH
Confidence 4444444 4688877765543221 455666666553110 011 14455555432112222
Q ss_pred HHHHHHHHHHHHhhCCCcccEEEeccCCCC--ChHHHHHHHHHHHHcCceeEEEeecC-cHHHHHHHHH
Q 020098 145 QSVLAALKDSLFRLGLSSVELYQLHWAGIW--GNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYE 210 (331)
Q Consensus 145 ~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~--~~~~~~~~L~~l~~~G~i~~iGvs~~-~~~~l~~~~~ 210 (331)
. .+-+.+..+|. |.+.+|..+.. ...--|+.+.++++.-.+.-|...+. +++.+.++++
T Consensus 152 ~----~~~~~l~~~G~---d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~ 213 (243)
T cd04731 152 V----EWAKEVEELGA---GEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFE 213 (243)
T ss_pred H----HHHHHHHHCCC---CEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHH
Confidence 2 22233445564 55666654431 11113555666666555666666554 5677777754
No 371
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=22.68 E-value=70 Score=22.33 Aligned_cols=17 Identities=12% Similarity=0.354 Sum_probs=15.5
Q ss_pred HHHHHHHhcCCCHHHHH
Q 020098 292 RIKELGENYSKTSTQNS 308 (331)
Q Consensus 292 ~l~~la~~~g~s~~qva 308 (331)
.+.+||+++|++..+|-
T Consensus 24 ~lkdIA~~Lgvs~~tIr 40 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTIR 40 (60)
T ss_pred cHHHHHHHHCCCHHHHH
Confidence 69999999999999885
No 372
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=22.59 E-value=6.1e+02 Score=23.32 Aligned_cols=204 Identities=12% Similarity=0.148 Sum_probs=113.0
Q ss_pred hHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 020098 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (331)
Q Consensus 73 ~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~ 152 (331)
+.+...++++...+.|...|+-.=-|.+.-+||+- =+..-=++|+ ...+.+.+.+.++
T Consensus 29 ~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~-Iq~A~~rAL~---------------------~g~t~~~~lel~~ 86 (265)
T COG0159 29 DLETSLEIIKTLVEAGADILELGVPFSDPVADGPT-IQAAHLRALA---------------------AGVTLEDTLELVE 86 (265)
T ss_pred CHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHH-HHHHHHHHHH---------------------CCCCHHHHHHHHH
Confidence 45899999999999999999988778776554322 0111112222 2466777777777
Q ss_pred HHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccC
Q 020098 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (331)
Q Consensus 153 ~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~ 232 (331)
+..+. +.+ +-+.++-.-++.-..++-+.++++++.|- .-+=+-...+++-+++...+++.++.+..+=.+-+.
T Consensus 87 ~~r~~-~~~-~Pivlm~Y~Npi~~~Gie~F~~~~~~~Gv-dGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~---- 159 (265)
T COG0159 87 EIRAK-GVK-VPIVLMTYYNPIFNYGIEKFLRRAKEAGV-DGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTP---- 159 (265)
T ss_pred HHHhc-CCC-CCEEEEEeccHHHHhhHHHHHHHHHHcCC-CEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCC----
Confidence 66543 222 23444433333223344445667777763 334466788888888888888888776653222221
Q ss_pred ccccchhHHHHHcCCeE---EEcccCccccccCCCCCCCCCCCCCCCccchhHHhhHHHHHHHHHHHHHhc-----CC-C
Q 020098 233 PEENGVKAACDELGITL---IAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENY-----SK-T 303 (331)
Q Consensus 233 ~~~~~~l~~~~~~gi~v---~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~la~~~-----g~-s 303 (331)
. +.++...++.=++ +++.+..|= +.. .. ....+.+++++++++.. |+ +
T Consensus 160 --~-~rl~~i~~~a~GFiY~vs~~GvTG~---------------~~~-~~----~~~~~~v~~vr~~~~~Pv~vGFGIs~ 216 (265)
T COG0159 160 --D-ERLKKIAEAASGFIYYVSRMGVTGA---------------RNP-VS----ADVKELVKRVRKYTDVPVLVGFGISS 216 (265)
T ss_pred --H-HHHHHHHHhCCCcEEEEecccccCC---------------Ccc-cc----hhHHHHHHHHHHhcCCCeEEecCcCC
Confidence 1 2455555554333 333232221 100 01 11445556777766443 44 4
Q ss_pred HHHHHHHhhh---hcccccchHHHHHhh
Q 020098 304 STQNSPCMSN---SLAKQILFQQLEKCL 328 (331)
Q Consensus 304 ~~qval~~~l---~~~g~~~~~~l~enl 328 (331)
+.|++--... .++|+.-++.++++.
T Consensus 217 ~e~~~~v~~~ADGVIVGSAiV~~i~~~~ 244 (265)
T COG0159 217 PEQAAQVAEAADGVIVGSAIVKIIEEGL 244 (265)
T ss_pred HHHHHHHHHhCCeEEEcHHHHHHHHhcc
Confidence 5555333222 467777777777763
No 373
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=22.46 E-value=7.3e+02 Score=24.20 Aligned_cols=136 Identities=13% Similarity=0.141 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHCCCC-eEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEe--------cCCCCCCCCCH
Q 020098 74 MKAAKAAFDTSLDNGIT-FFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVAT--------KFAALPWRLGR 144 (331)
Q Consensus 74 ~~~~~~~l~~A~~~Gvn-~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~t--------K~~~~~~~~~~ 144 (331)
-++-.+-+..|.+.|-. ..|.+ ..|+ -..+-+++-+.. .+=|.| |+....-+.+.
T Consensus 77 i~~EveK~~~A~~~GADtvMDLS-tGgd---------l~eiR~~ii~~s------~vPvGTVPIYqA~~~~~~~~~~~t~ 140 (432)
T COG0422 77 IDEEVEKAVWAIKWGADTVMDLS-TGGD---------LHEIREWIIRNS------PVPVGTVPIYQALEEVNGKVEDLTE 140 (432)
T ss_pred HHHHHHHHHHHHHhCcceeEecc-cCCC---------HHHHHHHHHhcC------CCCcCCchHHHHHHHHhcchhhCCH
Confidence 45555667889999966 55554 3355 556666654331 111111 00000134566
Q ss_pred HHHHHHHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecCcHHHHHHHHHHHHhcCCCeeeeee
Q 020098 145 QSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQV 224 (331)
Q Consensus 145 ~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~ 224 (331)
+.+.+.++.-.+ +-+|.+.||-- -.++.++.+++.|++ .|+.+-....+...+-. ..
T Consensus 141 d~~~~~v~~qa~----~GVdfmTIHaG------V~~~~~~~~~~~~R~--~giVSRGGsi~a~Wml~-----------~~ 197 (432)
T COG0422 141 DDFFDTVEKQAE----QGVDFMTIHAG------VLLEYVPRTKRSGRV--TGIVSRGGSIMAAWMLH-----------NH 197 (432)
T ss_pred HHHHHHHHHHHH----hCCcEEEeehh------hhHHHHHHHHhcCce--eeeeccchHHHHHHHHH-----------cC
Confidence 666666665554 45788888863 247788999999966 77776655444333211 11
Q ss_pred cccccccCccccchhHHHHHcCCeEE
Q 020098 225 NYSLIYRKPEENGVKAACDELGITLI 250 (331)
Q Consensus 225 ~~n~~~~~~~~~~~l~~~~~~gi~v~ 250 (331)
.=|++...-+ ++++.|++++|.+-
T Consensus 198 ~ENply~~fd--~lleI~k~yDvtlS 221 (432)
T COG0422 198 KENPLYEHFD--ELLEIFKEYDVTLS 221 (432)
T ss_pred CcCchhhhHH--HHHHHHHHhCeeee
Confidence 2233333322 48888888888764
No 374
>PLN02224 methionine-tRNA ligase
Probab=22.44 E-value=5.1e+02 Score=26.89 Aligned_cols=104 Identities=8% Similarity=-0.064 Sum_probs=57.8
Q ss_pred HCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCC---------CCCCHH----HHHHHHH
Q 020098 86 DNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALP---------WRLGRQ----SVLAALK 152 (331)
Q Consensus 86 ~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~---------~~~~~~----~i~~~v~ 152 (331)
+.+.-+|.|+..|-||.--=.|....++++.+.+...-. =.+++..+-..... ...++. .+...+.
T Consensus 67 ~~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~-G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~ 145 (616)
T PLN02224 67 EADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLL-GKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYR 145 (616)
T ss_pred CCCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhc-CCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 344458999999998753112233445555554432110 14566665553210 012222 2335667
Q ss_pred HHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCce
Q 020098 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLV 192 (331)
Q Consensus 153 ~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i 192 (331)
..+++||+++ |.+.- -.++.-.+.+.+.+.+|.++|.|
T Consensus 146 ~~~~~l~I~~-D~f~r-Tt~~~h~~~vq~~f~~L~~~G~I 183 (616)
T PLN02224 146 TLWKDLDIAY-DKFIR-TTDPKHEAIVKEFYARVFANGDI 183 (616)
T ss_pred HHHHHcCCCC-CcCee-CCCHHHHHHHHHHHHHHHHCCCE
Confidence 8889999865 64321 11112246688889999999998
No 375
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=22.36 E-value=5.6e+02 Score=22.81 Aligned_cols=126 Identities=19% Similarity=0.200 Sum_probs=65.3
Q ss_pred HHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecC-cHHHHHHHHHHHHhcCCCeeeeeecccc
Q 020098 150 ALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSL 228 (331)
Q Consensus 150 ~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~-~~~~l~~~~~~~~~~~~~~~~~q~~~n~ 228 (331)
-++..-+.||+..+ .+-.+. ..++-.+.|.++.++=.|..|-+... +..+-.+.-+.|...|+.+.. =+
T Consensus 49 ~~~~qA~algipl~---~~~~~~--~~e~~~e~l~~~l~~~gv~~vv~GdI~s~~qr~~~e~v~~~lgl~~~~-----PL 118 (223)
T TIGR00290 49 LTDLQAESIGIPLI---KLYTEG--TEEDEVEELKGILHTLDVEAVVFGAIYSEYQKTRIERVCRELGLKSFA-----PL 118 (223)
T ss_pred HHHHHHHHcCCCeE---EeecCC--CccHHHHHHHHHHHHcCCCEEEECCcccHHHHHHHHHHHHhcCCEEec-----cc
Confidence 34444566776532 221211 22334444444333323665555443 445555555567766643222 12
Q ss_pred cccCccccchhHHHHHcCCeEEEcccCccccccCCCCCCCCCCCCCCCccchhHHhhHHHHHHHHHHHHHhcCCCH
Q 020098 229 IYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (331)
Q Consensus 229 ~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~ 304 (331)
+.++.+ ++++.+-+.|+..+.-+.-+.|+ ...+. ++.+.. +.++.|.++.++||++|
T Consensus 119 W~~~~~--~ll~e~i~~G~~aiIv~v~a~gL-~~~~L---------Gr~i~~-------e~i~~L~~~~~~~gvd~ 175 (223)
T TIGR00290 119 WHRDPE--KLMEEFVEEKFEARIIAVAAEGL-DESWL---------GRRIDR-------KMIDELKKLNEKYGIHP 175 (223)
T ss_pred cCCCHH--HHHHHHHHcCCeEEEEEEecCCC-ChHHc---------CCcccH-------HHHHHHHHHHhccCCCc
Confidence 222223 58888889999988877777663 11111 111221 34557778888888765
No 376
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.35 E-value=6.8e+02 Score=23.78 Aligned_cols=93 Identities=8% Similarity=0.017 Sum_probs=61.1
Q ss_pred EEEeccCCC------------CChHHHHHHHHHHHHcCc----eeEEEee--cCcHHHHHHHHHHHHhcCCCeeeeeecc
Q 020098 165 LYQLHWAGI------------WGNEGFIDGLGDAVEQGL----VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (331)
Q Consensus 165 l~~lh~p~~------------~~~~~~~~~L~~l~~~G~----i~~iGvs--~~~~~~l~~~~~~~~~~~~~~~~~q~~~ 226 (331)
.+.||.++. ++.+++++++.++.++.. |+++=+. |.+.+++.++.+.++. ....++-++|
T Consensus 206 aiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~~~~~~~~~~V~ieyvLI~GvNDs~e~~~~L~~ll~~--~~~~VnLIPy 283 (343)
T PRK14468 206 ALSLHAPDEETRQRIIPTAHRYSIAEIMAAVRHYQAVTGRRVTLEYTMLKGVNDHLWQAELLADLLRG--LVSHVNLIPF 283 (343)
T ss_pred EEEcCCCCHHHHHHhccccccCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCcCCHHHHHHHHHHHhc--CCcEEEEEcC
Confidence 567787765 245788999987776643 3555555 4567778888777654 3466777899
Q ss_pred cccccCccc----c---chhHHHHHcCCeEEEcccCcccc
Q 020098 227 SLIYRKPEE----N---GVKAACDELGITLIAYCPIAQGA 259 (331)
Q Consensus 227 n~~~~~~~~----~---~~l~~~~~~gi~v~a~s~l~~G~ 259 (331)
|+....... . .+.+..+++|+.+......+.-+
T Consensus 284 np~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtiR~~~g~di 323 (343)
T PRK14468 284 NPWEGSPFQSSPRAQILAFADVLERRGVPVSVRWSRGRDV 323 (343)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcch
Confidence 986542211 1 24456677899999987776543
No 377
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=22.30 E-value=5.3e+02 Score=22.51 Aligned_cols=74 Identities=24% Similarity=0.239 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhh---CCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecCcHHHHHHHHHHHHhcCCCee
Q 020098 144 RQSVLAALKDSLFRL---GLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (331)
Q Consensus 144 ~~~i~~~v~~sL~~L---g~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~ 220 (331)
...+.+.+++.++++ |. .+++++.... .+.+...+.++.+..+ ++..|=+...+...+...++.+...++|+.
T Consensus 14 ~~~~~~~i~~~~~~~~~~g~-~~~l~i~~~~--~~~~~~~~~~~~~~~~-~vdgiIi~~~~~~~~~~~l~~~~~~~iPvv 89 (272)
T cd06300 14 RAQMLDEFKAQAKELKKAGL-ISEFIVTSAD--GDVAQQIADIRNLIAQ-GVDAIIINPASPTALNPVIEEACEAGIPVV 89 (272)
T ss_pred HHHHHHHHHHHHHhhhccCC-eeEEEEecCC--CCHHHHHHHHHHHHHc-CCCEEEEeCCChhhhHHHHHHHHHCCCeEE
Confidence 455667777777777 52 1455554333 2344556666666666 454444444433333333333444445544
Q ss_pred e
Q 020098 221 S 221 (331)
Q Consensus 221 ~ 221 (331)
+
T Consensus 90 ~ 90 (272)
T cd06300 90 S 90 (272)
T ss_pred E
Confidence 3
No 378
>PRK09776 putative diguanylate cyclase; Provisional
Probab=22.26 E-value=2.3e+02 Score=31.07 Aligned_cols=115 Identities=15% Similarity=0.085 Sum_probs=68.3
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCC---CChHHHHHHHHHHHHcCceeEEEeecCcH--H
Q 020098 129 VTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNYSE--K 203 (331)
Q Consensus 129 ~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~---~~~~~~~~~L~~l~~~G~i~~iGvs~~~~--~ 203 (331)
+.++-.+.. .......+...+.+.|++.+.. .+-+.+.-.+. ...+.+.+.++.|++.|- .|.+.+|.. .
T Consensus 926 ~~~~iNis~--~~l~~~~~~~~~~~~l~~~~~~-~~~l~~Ei~e~~~~~~~~~~~~~~~~l~~~G~--~~~lddfg~g~~ 1000 (1092)
T PRK09776 926 LSIALPLSV--AGLSSPTLLPFLLEQLENSPLP-PRLLHLEITETALLNHAESASRLVQKLRLAGC--RVVLSDFGRGLS 1000 (1092)
T ss_pred cEEEEEcCH--HHhCCchHHHHHHHHHHhcCCC-HHHeEEEEecHHhhcCHHHHHHHHHHHHHCCc--EEEEcCCCCCch
Confidence 334444432 2344455666777778777754 34455544443 456778899999999993 456666532 2
Q ss_pred HHHHHHHHHHhcCCCeeeeeecccccccCc---c----ccchhHHHHHcCCeEEEccc
Q 020098 204 RLRNAYEKLKKRGIPLASNQVNYSLIYRKP---E----ENGVKAACDELGITLIAYCP 254 (331)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~---~----~~~~l~~~~~~gi~v~a~s~ 254 (331)
.+..+.+ .+++++-+.-+++..-. . -..++..|++.|+.+++=+.
T Consensus 1001 ~~~~l~~------~~~d~iKid~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iaegV 1052 (1092)
T PRK09776 1001 SFNYLKA------FMADYLKLDGELVANLHGNLMDEMLISIIQGHAQRLGMKTIAGPV 1052 (1092)
T ss_pred HHHHHHh------CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHcCCcEEeccc
Confidence 3333322 46776666655544311 1 12488899999999998543
No 379
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=22.20 E-value=5e+02 Score=26.28 Aligned_cols=108 Identities=11% Similarity=0.047 Sum_probs=58.9
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCC-CcccEEEeccCCCCC-----hHHHHHHH
Q 020098 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL-SSVELYQLHWAGIWG-----NEGFIDGL 183 (331)
Q Consensus 110 E~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~-d~iDl~~lh~p~~~~-----~~~~~~~L 183 (331)
++-+-++|+......+.+=++|.|=+-. ..-.+.+..-+++.-+.... +-+++..+|-|.... .+.+++++
T Consensus 127 ~~~L~e~I~~~~~~y~P~~I~V~tTC~~---evIGDDi~a~i~~~~~~~~~p~~~pVi~v~TpgF~Gs~~~Gyd~a~~ai 203 (515)
T TIGR01286 127 LKNMVDGLQNCYALYKPKMIAVSTTCMA---EVIGDDLNAFIGNAKKEGFIPDDFPVPFAHTPSFVGSHITGYDNMFKGI 203 (515)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcHH---HHhhccHHHHHHHHHHhcCCCCCCceEEeeCCCCcccHHHHHHHHHHHH
Confidence 7778888877654434567778877632 11122233333333333322 236899999998733 22333333
Q ss_pred H-HHH----------HcCceeEEE-eecCcHHHHHHHHHHHHhcCCCeee
Q 020098 184 G-DAV----------EQGLVKAVG-VSNYSEKRLRNAYEKLKKRGIPLAS 221 (331)
Q Consensus 184 ~-~l~----------~~G~i~~iG-vs~~~~~~l~~~~~~~~~~~~~~~~ 221 (331)
- .+. ..++|.-|| ...+ +..++++.+.++..|+++.+
T Consensus 204 l~~l~~~~~~~~~~~~~~~VNii~g~~~~-~gd~~eikrlL~~~Gi~~~~ 252 (515)
T TIGR01286 204 LEYFTKGSMDDKVVGSNGKINIIPGFETY-IGNFREIKRILSLMGVGYTL 252 (515)
T ss_pred HHHHhhcccccccCCCCCeEEEECCCCCC-chhHHHHHHHHHHcCCCeEE
Confidence 2 222 136688775 3333 55666666667777766554
No 380
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=22.08 E-value=2.6e+02 Score=20.47 Aligned_cols=54 Identities=11% Similarity=0.056 Sum_probs=32.1
Q ss_pred HHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcC-ceeEEEeecC-cHHHHHHHH
Q 020098 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG-LVKAVGVSNY-SEKRLRNAY 209 (331)
Q Consensus 154 sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G-~i~~iGvs~~-~~~~l~~~~ 209 (331)
.+..+.....|++++....+ .....+.++.+++.+ .++-|-+++. +.....++.
T Consensus 35 ~~~~~~~~~~d~iiid~~~~--~~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~ 90 (112)
T PF00072_consen 35 ALELLKKHPPDLIIIDLELP--DGDGLELLEQIRQINPSIPIIVVTDEDDSDEVQEAL 90 (112)
T ss_dssp HHHHHHHSTESEEEEESSSS--SSBHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHH
T ss_pred HHHHhcccCceEEEEEeeec--cccccccccccccccccccEEEecCCCCHHHHHHHH
Confidence 33444444599999986433 134445555556555 6777888866 445555554
No 381
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=22.01 E-value=5.2e+02 Score=22.27 Aligned_cols=100 Identities=21% Similarity=0.151 Sum_probs=58.4
Q ss_pred HHHHHHHHhhCCCcccEEEeccCCC--CChHHHHHHHHHHHHcCceeEEEee-cCcHHHHHHHHHHHHhcCCCeeeeeec
Q 020098 149 AALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVN 225 (331)
Q Consensus 149 ~~v~~sL~~Lg~d~iDl~~lh~p~~--~~~~~~~~~L~~l~~~G~i~~iGvs-~~~~~~l~~~~~~~~~~~~~~~~~q~~ 225 (331)
+.++...+.||+.+ +.+.-+.. .-.+++.+.|.+++++| +..|-.. +++-.+-.+.-+.|.+.|+.+..
T Consensus 48 e~~~~~A~~lgipl---~~i~~~~~~e~~~~~l~~~l~~~~~~g-~~~vv~G~i~sd~~~~~~e~~~~~~gl~~~~---- 119 (194)
T cd01994 48 ELLELQAEAMGIPL---IRIEISGEEEDEVEDLKELLRKLKEEG-VDAVVFGAILSEYQRTRVERVCERLGLEPLA---- 119 (194)
T ss_pred HHHHHHHHHcCCcE---EEEeCCCCchHHHHHHHHHHHHHHHcC-CCEEEECccccHHHHHHHHHHHHHcCCEEEe----
Confidence 44556667788664 33332221 22466777888888774 5544333 33555556666667776643222
Q ss_pred ccccccCccccchhHHHHHcCCeEEEcccCcccc
Q 020098 226 YSLIYRKPEENGVKAACDELGITLIAYCPIAQGA 259 (331)
Q Consensus 226 ~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G~ 259 (331)
=++.++.+ ++++.+-+.|+..+.-+.-+.|+
T Consensus 120 -PLW~~~~~--~ll~e~~~~g~~~~iv~v~~~~L 150 (194)
T cd01994 120 -PLWGRDQE--ELLREMIEAGFKAIIIKVAAEGL 150 (194)
T ss_pred -cccCCCHH--HHHHHHHHcCCeEEEEEeccCCC
Confidence 12233333 58888999999977766666653
No 382
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=21.95 E-value=5.6e+02 Score=22.68 Aligned_cols=95 Identities=16% Similarity=0.164 Sum_probs=64.1
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCC--------------
Q 020098 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-------------- 175 (331)
Q Consensus 110 E~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~-------------- 175 (331)
+..+.+.|+..+ .++++|-... ++.+.+.-.....+....++.+. -++.+.||....
T Consensus 5 ~~~~~~~l~~~~----~~~vlvfVHG----yn~~f~~a~~r~aql~~~~~~~~-~~i~FsWPS~g~~~~Y~~d~~~a~~s 75 (233)
T PF05990_consen 5 QAQLNQRLAKSP----DKEVLVFVHG----YNNSFEDALRRAAQLAHDLGFPG-VVILFSWPSDGSLLGYFYDRESARFS 75 (233)
T ss_pred HHHHHHHHhhCC----CCeEEEEEeC----CCCCHHHHHHHHHHHHHHhCCCc-eEEEEEcCCCCChhhhhhhhhhHHHH
Confidence 666777777665 6899999998 66778877777888888888665 788889997611
Q ss_pred hHHHHHHHHHHHHcCceeEEEeecCc--HHHHHHHHHHHH
Q 020098 176 NEGFIDGLGDAVEQGLVKAVGVSNYS--EKRLRNAYEKLK 213 (331)
Q Consensus 176 ~~~~~~~L~~l~~~G~i~~iGvs~~~--~~~l~~~~~~~~ 213 (331)
-..+-+.|+.|.+....+.|=+-.|| ...+.++++...
T Consensus 76 ~~~l~~~L~~L~~~~~~~~I~ilaHSMG~rv~~~aL~~l~ 115 (233)
T PF05990_consen 76 GPALARFLRDLARAPGIKRIHILAHSMGNRVLLEALRQLA 115 (233)
T ss_pred HHHHHHHHHHHHhccCCceEEEEEeCchHHHHHHHHHHHH
Confidence 12345567777777444555555553 355555555443
No 383
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=21.85 E-value=3.7e+02 Score=23.13 Aligned_cols=77 Identities=10% Similarity=0.064 Sum_probs=0.0
Q ss_pred CCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCc--ccEEEeccCCCCC-
Q 020098 99 GSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSS--VELYQLHWAGIWG- 175 (331)
Q Consensus 99 g~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d~--iDl~~lh~p~~~~- 175 (331)
|+++- |..+++.|++.+ .++++.-=. .+.+++.+++.+...++.+.-.+ .-++++-......
T Consensus 43 G~~~l------e~~~a~~ia~~~-----a~~~~ld~~----~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~ 107 (178)
T PF14606_consen 43 GNGKL------EPEVADLIAEID-----ADLIVLDCG----PNMSPEEFRERLDGFVKTIREAHPDTPILLVSPIPYPAG 107 (178)
T ss_dssp CCCS--------HHHHHHHHHS-------SEEEEEES----HHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE----TTT
T ss_pred Ccccc------CHHHHHHHhcCC-----CCEEEEEee----cCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCCcccc
Q ss_pred -------------hHHHHHHHHHHHHcC
Q 020098 176 -------------NEGFIDGLGDAVEQG 190 (331)
Q Consensus 176 -------------~~~~~~~L~~l~~~G 190 (331)
.+.+-+++++|+++|
T Consensus 108 ~~~~~~~~~~~~~~~~~r~~v~~l~~~g 135 (178)
T PF14606_consen 108 YFDNSRGETVEEFREALREAVEQLRKEG 135 (178)
T ss_dssp TS--TTS--HHHHHHHHHHHHHHHHHTT
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHcC
No 384
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=21.81 E-value=1.3e+02 Score=30.70 Aligned_cols=55 Identities=24% Similarity=0.403 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHHHHHcCCeEEEcccCccc
Q 020098 203 KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (331)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G 258 (331)
..+++.++.++..++++.+.-+.|.. +.+.+-..+.++|+++|+.++....++.|
T Consensus 359 ~NL~RHIenvr~FGvPvVVAINKFd~-DTe~Ei~~I~~~c~e~Gv~va~~~~~~~G 413 (557)
T PRK13505 359 ANLERHIENIRKFGVPVVVAINKFVT-DTDAEIAALKELCEELGVEVALSEVWAKG 413 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCC-CCHHHHHHHHHHHHHcCCCEEEecccccC
Confidence 55777777788888776665444433 43333335889999999999865555554
No 385
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=21.79 E-value=5.5e+02 Score=25.20 Aligned_cols=81 Identities=15% Similarity=0.069 Sum_probs=49.2
Q ss_pred ccEEEeccCCCCChHHHHHHHHHHHHcC--ceeEEEeecC--cHHHHHHHHHHHHhcCCCeeeeeecccccccCccccch
Q 020098 163 VELYQLHWAGIWGNEGFIDGLGDAVEQG--LVKAVGVSNY--SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGV 238 (331)
Q Consensus 163 iDl~~lh~p~~~~~~~~~~~L~~l~~~G--~i~~iGvs~~--~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~ 238 (331)
.++.+|..|-+... |+.+.+|.+.- .|.-+|=-.+ +++.+.++++. -..+++|+..|-.-.-.+-.++
T Consensus 278 ~~i~~iEdPl~~~D---~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~-----~a~d~v~ik~~~iGGItea~~i 349 (425)
T TIGR01060 278 YPIVSIEDGLSEED---WEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEM-----GVANSILIKPNQIGTLTETLDA 349 (425)
T ss_pred CCcEEEEcCCCccc---HHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHh-----CCCCEEEecccccCCHHHHHHH
Confidence 46778887754323 55666666553 5544443322 47888888654 3466777766644322222258
Q ss_pred hHHHHHcCCeEEE
Q 020098 239 KAACDELGITLIA 251 (331)
Q Consensus 239 l~~~~~~gi~v~a 251 (331)
.+.|+++|+.++.
T Consensus 350 a~lA~~~Gi~~vv 362 (425)
T TIGR01060 350 VELAKKAGYTAVI 362 (425)
T ss_pred HHHHHHcCCcEEE
Confidence 8999999998554
No 386
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=21.78 E-value=6.5e+02 Score=23.33 Aligned_cols=143 Identities=12% Similarity=0.114 Sum_probs=83.0
Q ss_pred HHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCC-CCCCCHHHHHHHHHHHHH
Q 020098 78 KAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAAL-PWRLGRQSVLAALKDSLF 156 (331)
Q Consensus 78 ~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~-~~~~~~~~i~~~v~~sL~ 156 (331)
.++-....+.|+|..|.... .+- . .+.+|....+-.. +...+.+.++..++..-+
T Consensus 24 A~Vs~~Lae~g~NI~disq~-~d~------------------~-----~~~ffm~i~~~~~~~~~~~~~~l~~~l~~l~~ 79 (289)
T PRK13010 24 AAVSGFLAEKGCYIVELTQF-DDD------------------E-----SGRFFMRVSFHAQSAEAASVDTFRQEFQPVAE 79 (289)
T ss_pred HHHHHHHHHCCCCEEecccc-ccc------------------c-----cCcEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 34445556999999997654 210 0 3566655443211 234678899999999999
Q ss_pred hhCCCcccEEEeccCCC--------CChHHHHHHHHHHHHcCce--eEEE-eecCcHHHHHHHHHHHHhcCCCeeeeeec
Q 020098 157 RLGLSSVELYQLHWAGI--------WGNEGFIDGLGDAVEQGLV--KAVG-VSNYSEKRLRNAYEKLKKRGIPLASNQVN 225 (331)
Q Consensus 157 ~Lg~d~iDl~~lh~p~~--------~~~~~~~~~L~~l~~~G~i--~~iG-vs~~~~~~l~~~~~~~~~~~~~~~~~q~~ 225 (331)
+||++ +.++..+. .....-+++|-+..++|.+ .-.+ +||.. +- . +.++..|+|+.++.
T Consensus 80 ~l~l~----~~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~visn~~-~~-~---~~A~~~gIp~~~~~-- 148 (289)
T PRK13010 80 KFDMQ----WAIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIISNHP-DL-Q---PLAVQHDIPFHHLP-- 148 (289)
T ss_pred HhCCe----EEEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEEECCh-hH-H---HHHHHcCCCEEEeC--
Confidence 99976 34444322 1223346777777777763 4344 45553 22 2 34666677665433
Q ss_pred ccccccCccccchhHHHHHcCCeEEEcccC
Q 020098 226 YSLIYRKPEENGVKAACDELGITLIAYCPI 255 (331)
Q Consensus 226 ~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l 255 (331)
.+..++...+..+++..++.++-++.-..+
T Consensus 149 ~~~~~~~~~~~~~~~~l~~~~~Dlivlagy 178 (289)
T PRK13010 149 VTPDTKAQQEAQILDLIETSGAELVVLARY 178 (289)
T ss_pred CCcccccchHHHHHHHHHHhCCCEEEEehh
Confidence 233333332334788999988777664433
No 387
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=21.74 E-value=3.7e+02 Score=25.93 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=27.0
Q ss_pred chhHHHHHcCCeEEEcccCccccccCCCCCCCCCCCCCCCccchhHHhhHHHHHHHHHHHHHhcCCC
Q 020098 237 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKT 303 (331)
Q Consensus 237 ~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s 303 (331)
.+++.|+++||.|+.-+ +| .+|. ...+.++++|++.|.+
T Consensus 62 ~~L~~~~~~gIkvI~Na---Gg-------------------~np~------~~a~~v~eia~e~Gl~ 100 (362)
T PF07287_consen 62 PLLPAAAEKGIKVITNA---GG-------------------LNPA------GCADIVREIARELGLS 100 (362)
T ss_pred HHHHHHHhCCCCEEEeC---CC-------------------CCHH------HHHHHHHHHHHhcCCC
Confidence 48889999999988863 22 1222 1445788888888876
No 388
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=21.69 E-value=8.1e+02 Score=24.45 Aligned_cols=68 Identities=10% Similarity=0.121 Sum_probs=45.7
Q ss_pred ChHHHHHHHHHHHHcCcee----EEEeecCcHHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHHHHHcCC
Q 020098 175 GNEGFIDGLGDAVEQGLVK----AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGI 247 (331)
Q Consensus 175 ~~~~~~~~L~~l~~~G~i~----~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi 247 (331)
..++..++++.+++.|..- -+|+-+.+.+.+++.++.+...+ ++ ++.++.+.+.+.. ++.+.+++.+.
T Consensus 321 t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~--~~--~~~~~~~tP~PGT-~l~~~~~~~~~ 392 (497)
T TIGR02026 321 TTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWD--PD--QANWLMYTPWPFT-SLFGELSDRVE 392 (497)
T ss_pred CHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcC--CC--ceEEEEecCCCCc-HHHHHHHhhcc
Confidence 4678889999999999632 36677778888888877766543 33 3334555555443 47777777653
No 389
>PRK07534 methionine synthase I; Validated
Probab=21.69 E-value=6.9e+02 Score=23.65 Aligned_cols=176 Identities=14% Similarity=0.019 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcCcCCCCCC---C-CCchHHHHHHHHH---hccCCCCCCcEEEEecCCCCC------C
Q 020098 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASF---G-AINSETLLGRFIK---ERKQRDPEVEVTVATKFAALP------W 140 (331)
Q Consensus 74 ~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~---~-~~~sE~~iG~~l~---~~~~~~~R~~~~i~tK~~~~~------~ 140 (331)
++..+++=...+++|-+.|-|.....+.... + ....+++.-.+++ +..... ..+++|+.=+|+.. .
T Consensus 44 Pe~V~~vH~~Yl~AGAdiI~TnTy~as~~~l~~~~~~~~~~~l~~~av~lAr~a~~~~-~~~~~VaGsIGP~g~~l~~~~ 122 (336)
T PRK07534 44 PDNITALHQGFVDAGSDIILTNSFGGTAARLKLHDAQDRVHELNRAAAEIAREVADKA-GRKVIVAGSVGPTGEIMEPMG 122 (336)
T ss_pred HHHHHHHHHHHHHhcCCEEEecCcccCHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhc-CCccEEEEecCCCccccCCCC
Confidence 4777778888889999999875543331000 0 0012233333332 111000 23678888887632 1
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecCc------HHHHHHHHHHHHh
Q 020098 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYS------EKRLRNAYEKLKK 214 (331)
Q Consensus 141 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~~------~~~l~~~~~~~~~ 214 (331)
..+.+.+......-++.|--.-+|++++.-. ....|+..+++.+++.++--.+.++-.. ...++++++.++.
T Consensus 123 ~~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~--p~l~E~~a~~~~~~~~~~Pv~vSft~~~~g~l~~G~~~~~~~~~~~~ 200 (336)
T PRK07534 123 ALTHALAVEAFHEQAEGLKAGGADVLWVETI--SAPEEIRAAAEAAKLAGMPWCGTMSFDTAGRTMMGLTPADLADLVEK 200 (336)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEEecc--CCHHHHHHHHHHHHHcCCeEEEEEEECCCCeeCCCCcHHHHHHHHHh
Confidence 2456777777777777774455999999864 2466777777777777776566665321 2345555555544
Q ss_pred cCCCeeeeeecccc-cccCccccchhHHHHHc-CCeEEEccc
Q 020098 215 RGIPLASNQVNYSL-IYRKPEENGVKAACDEL-GITLIAYCP 254 (331)
Q Consensus 215 ~~~~~~~~q~~~n~-~~~~~~~~~~l~~~~~~-gi~v~a~s~ 254 (331)
.+..++++-+++.. .+.-.. .++...... ++.+++|.-
T Consensus 201 ~~~~~~avGvNC~~gp~~~~~--~l~~~~~~~~~~pl~vyPN 240 (336)
T PRK07534 201 LGEPPLAFGANCGVGASDLLR--TVLGFTAQGPERPIIAKGN 240 (336)
T ss_pred cCCCceEEEecCCCCHHHHHH--HHHHHHHhcCCCeEEEEcC
Confidence 33456777777764 221101 234444333 466666543
No 390
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=21.67 E-value=2.5e+02 Score=24.53 Aligned_cols=60 Identities=15% Similarity=0.128 Sum_probs=35.6
Q ss_pred HHHHHHHHHHcCceeEEEeecC-cHHHHHHHHHHHHhcCCCeeeeeecccccccCccccchhHHHHHcCCeEEE
Q 020098 179 FIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (331)
Q Consensus 179 ~~~~L~~l~~~G~i~~iGvs~~-~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a 251 (331)
..+.++.++++-.=-.||..+. +.++++.+++. |-.|.+ .+. ...+++++|+++||.++.
T Consensus 46 a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~a----GA~Fiv--------SP~-~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 46 ALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAA----GAQFIV--------SPG-FDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp HHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHH----T-SEEE--------ESS---HHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHc----CCCEEE--------CCC-CCHHHHHHHHHcCCcccC
Confidence 3444444443311144888876 78888888665 334543 111 112599999999999886
No 391
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=21.64 E-value=6.6e+02 Score=23.35 Aligned_cols=140 Identities=13% Similarity=0.143 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHCCCCeEEC--Cc-------CcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCH
Q 020098 74 MKAAKAAFDTSLDNGITFFDT--AE-------VYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGR 144 (331)
Q Consensus 74 ~~~~~~~l~~A~~~Gvn~~Dt--a~-------~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~ 144 (331)
.++..+....+.+.|+..||. +. .|+.. . ..+--+.+.+.++...+ +-++-|+.|+... +..+.
T Consensus 74 ~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs-~--l~~~~~~~~ei~~~vr~---~~~~pv~vKir~g-~~~~~ 146 (319)
T TIGR00737 74 PDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGS-A--LLRDPDLIGKIVKAVVD---AVDIPVTVKIRIG-WDDAH 146 (319)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccc-h--HhCCHHHHHHHHHHHHh---hcCCCEEEEEEcc-cCCCc
Confidence 467777777888899999985 11 12110 0 00114666666666532 1235677786320 11111
Q ss_pred HHHHHHHHHHHHhhCCCcccEEEeccCCC---CChHHHHHHHHHHHHcCceeEEEeecC-cHHHHHHHHHHHHhcCCCee
Q 020098 145 QSVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLA 220 (331)
Q Consensus 145 ~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~---~~~~~~~~~L~~l~~~G~i~~iGvs~~-~~~~l~~~~~~~~~~~~~~~ 220 (331)
..+ ..+-+.|+..|. |.+.+|.... +...-.|+.+.++++.=.|.-|+..+. +++.+.++++. ...+
T Consensus 147 ~~~-~~~a~~l~~~G~---d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~-----~gad 217 (319)
T TIGR00737 147 INA-VEAARIAEDAGA---QAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLET-----TGCD 217 (319)
T ss_pred chH-HHHHHHHHHhCC---CEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHh-----hCCC
Confidence 111 234445666775 5556675322 222335788888888766777777775 67777777643 2455
Q ss_pred eeeeccccc
Q 020098 221 SNQVNYSLI 229 (331)
Q Consensus 221 ~~q~~~n~~ 229 (331)
.+++---++
T Consensus 218 ~VmigR~~l 226 (319)
T TIGR00737 218 GVMIGRGAL 226 (319)
T ss_pred EEEEChhhh
Confidence 555544433
No 392
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=21.60 E-value=7.6e+02 Score=24.10 Aligned_cols=102 Identities=14% Similarity=0.113 Sum_probs=57.8
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCC----CcccEEEeccCCCCC-----hHHHH
Q 020098 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL----SSVELYQLHWAGIWG-----NEGFI 180 (331)
Q Consensus 110 E~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~----d~iDl~~lh~p~~~~-----~~~~~ 180 (331)
|+-+-++|+...+..+.+-++|.|-+- .+-+-..++...+++.- ..+.++.++-|.... .+.++
T Consensus 69 ~~kL~~aI~~~~~~~~P~~I~V~ttc~-------~~iiGdDi~~v~~~~~~~~~~~~~~vi~v~t~gF~g~~~~G~~~a~ 141 (429)
T cd03466 69 EKNLKKGLKNVIEQYNPEVIGIATTCL-------SETIGEDVPRIIREFREEVDDSEPKIIPASTPGYGGTHVEGYDTAV 141 (429)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCch-------HHHhhcCHHHHHHHHhhcccCCCCcEEEEECCCCcccHHHHHHHHH
Confidence 888888887765443345566766653 33333334444444432 236788888887622 22233
Q ss_pred HHHHH-HH----HcCceeEEEeecCcHHHHHHHHHHHHhcCCCe
Q 020098 181 DGLGD-AV----EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPL 219 (331)
Q Consensus 181 ~~L~~-l~----~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~ 219 (331)
++|-+ +. +.++|.-||-.+ ++..++++.+..+..|+.+
T Consensus 142 ~al~~~~~~~~~~~~~VNlig~~~-~~~D~~ei~~lL~~~Gl~~ 184 (429)
T cd03466 142 RSIVKNIAVDPDKIEKINVIAGMM-SPADIREIKEILREFGIEY 184 (429)
T ss_pred HHHHHHhccCCCCCCcEEEECCCC-ChhHHHHHHHHHHHcCCCe
Confidence 33322 22 246688887543 3556677777777777665
No 393
>PRK05660 HemN family oxidoreductase; Provisional
Probab=21.48 E-value=7.2e+02 Score=23.78 Aligned_cols=42 Identities=14% Similarity=0.056 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHHHHcCc--e---eEEEeecCcHHHHHHHHHHHHhcC
Q 020098 175 GNEGFIDGLGDAVEQGL--V---KAVGVSNYSEKRLRNAYEKLKKRG 216 (331)
Q Consensus 175 ~~~~~~~~L~~l~~~G~--i---~~iGvs~~~~~~l~~~~~~~~~~~ 216 (331)
..++++++++.+++.|- | -.+|+.+.+.+.+.+.++.+...+
T Consensus 141 ~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt~~~~~~~l~~~~~l~ 187 (378)
T PRK05660 141 GPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQSLEEALDDLRQAIALN 187 (378)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhcC
Confidence 45677777777777774 2 235666666666666666555444
No 394
>PRK09061 D-glutamate deacylase; Validated
Probab=21.46 E-value=7.4e+02 Score=24.88 Aligned_cols=18 Identities=17% Similarity=0.326 Sum_probs=8.4
Q ss_pred ChHHHHHHHHHHHHcCce
Q 020098 175 GNEGFIDGLGDAVEQGLV 192 (331)
Q Consensus 175 ~~~~~~~~L~~l~~~G~i 192 (331)
+.+++...++.+++.|.+
T Consensus 197 ~~~eL~~l~~~A~~~g~~ 214 (509)
T PRK09061 197 GHKEYLELARLAARAGVP 214 (509)
T ss_pred CHHHHHHHHHHHHHcCCE
Confidence 344444445555544443
No 395
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=21.42 E-value=7e+02 Score=23.58 Aligned_cols=24 Identities=4% Similarity=0.037 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHH-------HHHHCCCCeEEC
Q 020098 71 DRKMKAAKAAFD-------TSLDNGITFFDT 94 (331)
Q Consensus 71 ~~~~~~~~~~l~-------~A~~~Gvn~~Dt 94 (331)
+++.++..++++ .|.++|+..+|-
T Consensus 130 ~mt~~eI~~ii~~f~~AA~ra~~aGfDgVei 160 (343)
T cd04734 130 AMEEEDIEEIIAAFADAARRCQAGGLDGVEL 160 (343)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 455566555554 456789999885
No 396
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=21.37 E-value=4.5e+02 Score=21.30 Aligned_cols=111 Identities=14% Similarity=0.205 Sum_probs=58.2
Q ss_pred HHHHHHHHHH-HCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 020098 76 AAKAAFDTSL-DNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (331)
Q Consensus 76 ~~~~~l~~A~-~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~s 154 (331)
-...++...+ +.|+..+|....-.. |+++..+.+..+ +=+.|++-.+ .....+ +.+-+.
T Consensus 18 lG~~iv~~~lr~~G~eVi~LG~~vp~---------e~i~~~a~~~~~-----d~V~lS~~~~-----~~~~~~-~~~~~~ 77 (137)
T PRK02261 18 VGNKILDRALTEAGFEVINLGVMTSQ---------EEFIDAAIETDA-----DAILVSSLYG-----HGEIDC-RGLREK 77 (137)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCCH---------HHHHHHHHHcCC-----CEEEEcCccc-----cCHHHH-HHHHHH
Confidence 3444555555 669999997655554 777777666554 4555555542 233333 444466
Q ss_pred HHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecCcHHHHHHH
Q 020098 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNA 208 (331)
Q Consensus 155 L~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~ 208 (331)
|++.+...+-+ ++=.....+....-+..++|++.| +..+=-.+-+.+++...
T Consensus 78 L~~~~~~~~~i-~vGG~~~~~~~~~~~~~~~l~~~G-~~~vf~~~~~~~~i~~~ 129 (137)
T PRK02261 78 CIEAGLGDILL-YVGGNLVVGKHDFEEVEKKFKEMG-FDRVFPPGTDPEEAIDD 129 (137)
T ss_pred HHhcCCCCCeE-EEECCCCCCccChHHHHHHHHHcC-CCEEECcCCCHHHHHHH
Confidence 66666655533 333322122222333456778888 43332223344444443
No 397
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.32 E-value=6.2e+02 Score=22.97 Aligned_cols=65 Identities=12% Similarity=0.169 Sum_probs=36.9
Q ss_pred HHHHHHHHhhCCCcccEEEeccCCCC-ChH---HHHH--------HHHHHHHcC-ceeEEEeecCcHHHHHHHHHHHH
Q 020098 149 AALKDSLFRLGLSSVELYQLHWAGIW-GNE---GFID--------GLGDAVEQG-LVKAVGVSNYSEKRLRNAYEKLK 213 (331)
Q Consensus 149 ~~v~~sL~~Lg~d~iDl~~lh~p~~~-~~~---~~~~--------~L~~l~~~G-~i~~iGvs~~~~~~l~~~~~~~~ 213 (331)
..+-..+.++|++++-+|.+-.-+.. +.+ .+++ .+..+.+.| +|+.||=-+.=++.+.+.++.++
T Consensus 48 ~~i~~~c~~lgI~~lTvYaFS~eN~~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~iri~viGd~~~Lp~~l~~~i~~~e 125 (249)
T PRK14834 48 RRVVRAAGELGIGYLTLFAFSSENWSRPASEVSDLFGLLRLFIRRDLAELHRNGVRVRVIGERAGLEADICALLNEAE 125 (249)
T ss_pred HHHHHHHHHcCCCEEEEEEEeccccCCCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEcChhhCCHHHHHHHHHHH
Confidence 34445566889999999888644331 211 1222 233455566 68899966554555555444333
No 398
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=21.29 E-value=96 Score=30.39 Aligned_cols=52 Identities=17% Similarity=0.313 Sum_probs=29.2
Q ss_pred CCCcccccceecccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCC--eEECCc
Q 020098 43 GSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGIT--FFDTAE 96 (331)
Q Consensus 43 ~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gvn--~~Dta~ 96 (331)
+-|....+|.||.=.+|.. .|...+- +.--+.+.+++.+.+++|++ |+||+=
T Consensus 77 ~~g~~~~~iiLGGDHLGP~-~w~~lpa-eeAM~~A~~li~ayv~AGF~KIHLD~Sm 130 (424)
T PF08013_consen 77 EVGFPRDRIILGGDHLGPN-PWQHLPA-EEAMAKAKELIRAYVEAGFTKIHLDCSM 130 (424)
T ss_dssp HCT--GGGEEEEEEEESSC-CCTTSBH-HHHHHHHHHHHHHHHCTT--EEEE---C
T ss_pred HcCCchhhEEecCCCCCcc-cccCCCH-HHHHHHHHHHHHHHHHcCCceEeecCCC
Confidence 3466777888888776653 3433211 11234678899999999999 889864
No 399
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=21.12 E-value=6.6e+02 Score=23.16 Aligned_cols=111 Identities=12% Similarity=0.046 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHhh---CCCcccEEEeccCCC---CChHHHHHHHHHHHH--------cCceeEEEeecCcHHHHHH
Q 020098 142 LGRQSVLAALKDSLFRL---GLSSVELYQLHWAGI---WGNEGFIDGLGDAVE--------QGLVKAVGVSNYSEKRLRN 207 (331)
Q Consensus 142 ~~~~~i~~~v~~sL~~L---g~d~iDl~~lh~p~~---~~~~~~~~~L~~l~~--------~G~i~~iGvs~~~~~~l~~ 207 (331)
.+++.++......++.+ |+.|+|+.+-..... ...++.++++.+..+ ..++-..+..+.+.+.+++
T Consensus 66 ~~~ed~~~~~~~~~~e~~~~Gvt~~E~~~~p~~~~~~~~~~~~~~~~~~~ai~~~~~~~gi~~~l~~~~~~~~~~~~~~~ 145 (325)
T cd01320 66 QTEEDFERLAYEYLEDAAADGVVYAEIRFSPQLHTRRGLSFDEVVEAVLRGLDEAEAEFGIKARLILCGLRHLSPESAQE 145 (325)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEEeCchhhccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEecCCCCHHHHHH
Q ss_pred HHHHHHhcCCC-eeeeeecccccccCccc-cchhHHHHHcCCeEEEc
Q 020098 208 AYEKLKKRGIP-LASNQVNYSLIYRKPEE-NGVKAACDELGITLIAY 252 (331)
Q Consensus 208 ~~~~~~~~~~~-~~~~q~~~n~~~~~~~~-~~~l~~~~~~gi~v~a~ 252 (331)
.++.+...... ..-+-+..+......+. ..+++.|+++|+.+..+
T Consensus 146 ~~~~~~~~~~~~vvg~~l~~~~~~~~~~~~~~~~~~A~~~g~~v~~H 192 (325)
T cd01320 146 TLELALKYRDKGVVGFDLAGDEVGFPPEKFVRAFQRAREAGLRLTAH 192 (325)
T ss_pred HHHHHHhccCCCEEEeecCCCCCCCCHHHHHHHHHHHHHCCCceEEe
No 400
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=21.10 E-value=8e+02 Score=24.16 Aligned_cols=24 Identities=4% Similarity=-0.022 Sum_probs=17.9
Q ss_pred CchhhHHHHHHHHHHHHHCCCCeE
Q 020098 69 WDDRKMKAAKAAFDTSLDNGITFF 92 (331)
Q Consensus 69 ~~~~~~~~~~~~l~~A~~~Gvn~~ 92 (331)
+...+.++..+-++...+.|++.|
T Consensus 175 ~rsr~~e~Vv~Ei~~l~~~G~~ei 198 (445)
T PRK14340 175 ERSHPFASVLDEVRALAEAGYREI 198 (445)
T ss_pred CcCCCHHHHHHHHHHHHHCCCeEE
Confidence 344566777777888889998866
No 401
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=21.03 E-value=1.9e+02 Score=26.57 Aligned_cols=59 Identities=17% Similarity=0.179 Sum_probs=35.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecCcH
Q 020098 138 LPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSE 202 (331)
Q Consensus 138 ~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~~~ 202 (331)
+++..+.+.+.+.-++.|-..+ |..=+.=+.-.| |..+....|++|++.| +-||.||..
T Consensus 59 lpygnaN~iv~em~~eiLp~v~-~tPViaGv~atD--P~~~~~~fl~~lk~~G---f~GV~NfPT 117 (268)
T PF09370_consen 59 LPYGNANEIVMEMAREILPVVK-DTPVIAGVCATD--PFRDMDRFLDELKELG---FSGVQNFPT 117 (268)
T ss_dssp BTEEEHHHHHHHHHHHHGGG-S-SS-EEEEE-TT---TT--HHHHHHHHHHHT----SEEEE-S-
T ss_pred hcccCHhHHHHHHHHhhhhhcc-CCCEEEEecCcC--CCCcHHHHHHHHHHhC---CceEEECCc
Confidence 3566667777777788888877 334444455544 4567778888999886 678999963
No 402
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=21.03 E-value=63 Score=26.26 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=18.5
Q ss_pred chhHHHHHcCCeEEEcccCc
Q 020098 237 GVKAACDELGITLIAYCPIA 256 (331)
Q Consensus 237 ~~l~~~~~~gi~v~a~s~l~ 256 (331)
++++.|+++||.|++|-.+.
T Consensus 48 e~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 48 EQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHCCCEEEEEEeee
Confidence 59999999999999998877
No 403
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=20.97 E-value=5.9e+02 Score=22.58 Aligned_cols=139 Identities=13% Similarity=0.012 Sum_probs=77.6
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecCcHHHHH
Q 020098 127 VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLR 206 (331)
Q Consensus 127 ~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~ 206 (331)
++++.+-|+-. ....+.+..++.+++.-+..|.+ -+.|-.+++....+.+... +...|.|-+-+...-.
T Consensus 28 ~~~~~~~~~~~-~~~~~~~~~~~d~~~l~~~yg~~---gv~i~~~np~~l~~~V~k~-------~~~vv~V~GGd~~vNR 96 (216)
T PRK03892 28 DEVVFTKKLVL-EDSPDFGSLKEELKELKKEYGKV---AILLVTPKPSLIREVKQRF-------LNYLIYVQGGDLRVNR 96 (216)
T ss_pred hheEEEEEEec-cCCCChhhhHHHHHHHHHhcCcc---eEEEecCCHHHHHHHHHhc-------cceEEEEECCcHHHHH
Confidence 68888888732 22345667788888888888865 6666665542233333222 4566777666544444
Q ss_pred HHHHHHHhcCCCeeeeeeccc-ccccCccccchhHHHHHcCCeEE-EcccCccccccCCCCCCCCCCCCCCCccchhHHh
Q 020098 207 NAYEKLKKRGIPLASNQVNYS-LIYRKPEENGVKAACDELGITLI-AYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLR 284 (331)
Q Consensus 207 ~~~~~~~~~~~~~~~~q~~~n-~~~~~~~~~~~l~~~~~~gi~v~-a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~ 284 (331)
.+++ . ..+++-.++- --+. ....-+...+.++||++- ..+|+-.. .+....
T Consensus 97 ~AvE---~---~VDVL~~P~~~Rkd~-g~dHVLAKlAa~n~VAIe~~L~plL~~--------------------~G~~Ra 149 (216)
T PRK03892 97 YAIE---R---GVDAIISPWVGRKDP-GIDHVLARMAAKRGVAIGFSLSPLLRA--------------------NPYERA 149 (216)
T ss_pred HHHh---c---ccceeecccccCcCC-CccHHHHHHHHHcCeEEEEecHHHHhh--------------------CchhHH
Confidence 4432 1 3454433321 1111 111137788889999974 45555431 112223
Q ss_pred hHHHHHHHHHHHHHhcCCC
Q 020098 285 NLQPLLNRIKELGENYSKT 303 (331)
Q Consensus 285 ~~~~~~~~l~~la~~~g~s 303 (331)
+....+..+..+++||+.+
T Consensus 150 r~L~~~r~~l~L~rKYd~P 168 (216)
T PRK03892 150 NILRFMMKAWQLVNKYKVP 168 (216)
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 4555556778888888754
No 404
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=20.85 E-value=8.1e+02 Score=24.08 Aligned_cols=144 Identities=14% Similarity=0.145 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHCCCCe-EECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEe--------cCCCCCCCCCH
Q 020098 74 MKAAKAAFDTSLDNGITF-FDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVAT--------KFAALPWRLGR 144 (331)
Q Consensus 74 ~~~~~~~l~~A~~~Gvn~-~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~t--------K~~~~~~~~~~ 144 (331)
.+.=.+-+..|.+.|-.. .|.+ .-|+ -..+-+++-+. ..+-|.| +......+.+.
T Consensus 75 ~~~E~~K~~~A~~~GADtvMDLS-tggd---------l~~iR~~il~~------~~vpvGTVPiYqa~~~~~~~~~~~t~ 138 (420)
T PF01964_consen 75 IEEELEKLKIAEKAGADTVMDLS-TGGD---------LDEIRRAILEN------SPVPVGTVPIYQAAIRKGGSIVDMTE 138 (420)
T ss_dssp HHHHHHHHHHHHHTT-SEEEE----STT---------HHHHHHHHHHT-------SS-EEE-HHHHHHHHTTT-GGG--H
T ss_pred HHHHHHHHHHHHHhCCCEEEEcC-CCCC---------HHHHHHHHHHh------CCCccccchHHHHHHHhCCChhhCCH
Confidence 345556688999999884 4543 2334 44555555432 2333333 11111245678
Q ss_pred HHHHHHHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecCcHHHHHHHHHHHHhcCCCeeeeee
Q 020098 145 QSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQV 224 (331)
Q Consensus 145 ~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~ 224 (331)
+.+.+.+++-.+ +=+|.+-+|.--. .+.++.+++++++ .|+-+-....+..++..-.
T Consensus 139 d~~~~~ie~qa~----~GVDfmtiH~git------~~~~~~~~~~~R~--~giVSRGGs~l~~WM~~n~----------- 195 (420)
T PF01964_consen 139 DDFFDVIEKQAK----DGVDFMTIHCGIT------RETLERLKKSGRI--MGIVSRGGSILAAWMLHNG----------- 195 (420)
T ss_dssp HHHHHHHHHHHH----HT--EEEE-TT--------GGGGGGGT--TSS--S----HHHHHHHHHHHHHT-----------
T ss_pred HHHHHHHHHHHH----cCCCEEEEccchh------HHHHHHHhhhccc--cCccccchHHHHHHHHhcC-----------
Confidence 888877777665 3478899997432 4556778888865 5655554444433322211
Q ss_pred cccccccCccccchhHHHHHcCCeEEEcccCccc
Q 020098 225 NYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (331)
Q Consensus 225 ~~n~~~~~~~~~~~l~~~~~~gi~v~a~s~l~~G 258 (331)
.=||+...-. .+++.|++++|.+----.|-.|
T Consensus 196 ~ENPly~~fD--~lLeI~k~yDVtLSLGDglRPG 227 (420)
T PF01964_consen 196 KENPLYEHFD--RLLEIAKEYDVTLSLGDGLRPG 227 (420)
T ss_dssp S--HHHHTHH--HHHHHHTTTT-EEEE--TT--S
T ss_pred CcCcHHHhHH--HHHHHHHHhCeeEecccccCCC
Confidence 1233333322 4888888888887543333333
No 405
>PRK09989 hypothetical protein; Provisional
Probab=20.85 E-value=6e+02 Score=22.55 Aligned_cols=52 Identities=12% Similarity=-0.029 Sum_probs=29.8
Q ss_pred chhHHHHHcCCeEEEcccCccccccCCCCCCCCCCCCCCCccchhHHhhHHHHHHHHHHHHHhcCCCH
Q 020098 237 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (331)
Q Consensus 237 ~~l~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~ 304 (331)
..++.|++.|...+... .|.+.. + .......+...+.+.++.++|+++|+..
T Consensus 89 ~~i~~A~~lg~~~v~v~---~g~~~~---------~----~~~~~~~~~~~~~l~~l~~~a~~~gv~l 140 (258)
T PRK09989 89 LALEYALALNCEQVHVM---AGVVPA---------G----EDAERYRAVFIDNLRYAADRFAPHGKRI 140 (258)
T ss_pred HHHHHHHHhCcCEEEEC---ccCCCC---------C----CCHHHHHHHHHHHHHHHHHHHHhcCCEE
Confidence 47888899999866321 121110 0 0112334455566677888888888653
No 406
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=20.82 E-value=9.4e+02 Score=24.85 Aligned_cols=96 Identities=10% Similarity=0.089 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcCcCCCCCC---C-CCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCC-----CCCH
Q 020098 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASF---G-AINSETLLGRFIKERKQRDPEVEVTVATKFAALPW-----RLGR 144 (331)
Q Consensus 74 ~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~---~-~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~-----~~~~ 144 (331)
++..+++=+..+++|-+.+.|...+.+.... | ....+++...+++-..+-.. .+++|+.=+|+... ..+.
T Consensus 42 Pe~i~~vH~~yl~AGAdvi~TnTy~as~~~l~~~g~~~~~~~l~~~av~lAr~a~~-~~~~VagsiGP~g~~~~~~~~~~ 120 (612)
T PRK08645 42 PELILRIHREYIEAGADVIQTNTFGANRIKLKRYGLEDKVKEINRAAVRLAREAAG-DDVYVAGTIGPIGGRGPLGDISL 120 (612)
T ss_pred HHHHHHHHHHHHHhCCCEEecCcccccHHHHHhcCchHHHHHHHHHHHHHHHHHhc-CCCeEEEeCCCCCCCCCCCCCCH
Confidence 4778888888889999999987665542111 0 11245555555542221111 34777777875321 2467
Q ss_pred HHHHHHHHHHHHhhCCCcccEEEecc
Q 020098 145 QSVLAALKDSLFRLGLSSVELYQLHW 170 (331)
Q Consensus 145 ~~i~~~v~~sL~~Lg~d~iDl~~lh~ 170 (331)
+.+......-.+.|.-.-+|++++.-
T Consensus 121 ~~~~~~~~~~~~~l~~~gvD~l~~ET 146 (612)
T PRK08645 121 EEIRREFREQIDALLEEGVDGLLLET 146 (612)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEc
Confidence 88888888778877545688888874
No 407
>PRK15063 isocitrate lyase; Provisional
Probab=20.76 E-value=5.2e+02 Score=25.55 Aligned_cols=143 Identities=13% Similarity=0.036 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHCCCC---eEECCcC-cCCCCCCC--CCchHHHHHHHHHhccCC-CCCCcEEEEecCCCCC--------
Q 020098 75 KAAKAAFDTSLDNGIT---FFDTAEV-YGSRASFG--AINSETLLGRFIKERKQR-DPEVEVTVATKFAALP-------- 139 (331)
Q Consensus 75 ~~~~~~l~~A~~~Gvn---~~Dta~~-Yg~g~~~~--~~~sE~~iG~~l~~~~~~-~~R~~~~i~tK~~~~~-------- 139 (331)
....++++..+++|+- +=|-... =-.|+..| ...-|+.+.+.-..+... ....+++|..+.....
T Consensus 161 ~nv~~~vk~~ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~AAr~A~d~~g~~~vIiARTDA~aa~li~s~~ 240 (428)
T PRK15063 161 LNAFELMKAMIEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVAARLAADVMGVPTLVIARTDAEAADLLTSDV 240 (428)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccccccccccc
Confidence 4588889999988775 4454210 00111111 123455555543322110 0013577777764310
Q ss_pred ---------CCCC-------HHHHHHHHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHH--cCceeEEEeec--
Q 020098 140 ---------WRLG-------RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVE--QGLVKAVGVSN-- 199 (331)
Q Consensus 140 ---------~~~~-------~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~--~G~i~~iGvs~-- 199 (331)
...+ ...+..+|++.+.-.. +.|+++++... .+.+++-+..+.+.. =+++...|.|.
T Consensus 241 d~rD~~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa~--GAD~iw~Et~~-~d~ee~~~fa~~v~~~~P~~~layn~sPsf 317 (428)
T PRK15063 241 DERDRPFITGERTAEGFYRVKAGIEQAIARGLAYAP--YADLIWCETST-PDLEEARRFAEAIHAKFPGKLLAYNCSPSF 317 (428)
T ss_pred cccccccccCCCccccccccccCHHHHHHHHHHHhc--CCCEEEeCCCC-CCHHHHHHHHHhhcccCccceeecCCCCCc
Confidence 0001 1236677777774433 89999998522 123333222223222 24444445431
Q ss_pred -----CcHHHHHHHHHHHHhcCCCee
Q 020098 200 -----YSEKRLRNAYEKLKKRGIPLA 220 (331)
Q Consensus 200 -----~~~~~l~~~~~~~~~~~~~~~ 220 (331)
++.+++..+.+-+...|+++.
T Consensus 318 nW~~~~~~~~~~~f~~eL~~~Gy~~~ 343 (428)
T PRK15063 318 NWKKNLDDATIAKFQRELGAMGYKFQ 343 (428)
T ss_pred ccccccCHHHHHHHHHHHHHcCceEE
Confidence 234555555554555554443
No 408
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.61 E-value=5.8e+02 Score=22.32 Aligned_cols=75 Identities=15% Similarity=0.115 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhhCCCc--ccEEEeccCCCCChHHHHHHHHHHHHcCceeEEEeecCcHHHHHHHHHHHHhcCCCeee
Q 020098 144 RQSVLAALKDSLFRLGLSS--VELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (331)
Q Consensus 144 ~~~i~~~v~~sL~~Lg~d~--iDl~~lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~ 221 (331)
...+.+.+++.++++|..+ +++++.... .+.+...+.++.+...+ +..|=+...+...+...++.+...++|+..
T Consensus 14 ~~~~~~gi~~~a~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~l~~~~-vDgiii~~~~~~~~~~~i~~~~~~gIpvV~ 90 (274)
T cd06311 14 TAGIVWHAQAAAKKLEAAYPDVEFILVTAS--NDTEQQNAQQDLLINRK-IDALVILPFESAPLTQPVAKAKKAGIFVVV 90 (274)
T ss_pred HHHHHHHHHHHHHHhhhhCCCeEEEEEcCC--CCHHHHHHHHHHHHHcC-CCEEEEeCCCchhhHHHHHHHHHCCCeEEE
Confidence 5567788888888887544 354443322 23344445555565544 555556555444444444444555565443
No 409
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=20.60 E-value=5.2e+02 Score=23.03 Aligned_cols=71 Identities=24% Similarity=0.382 Sum_probs=42.0
Q ss_pred HHHHHHHHHcCceeEEEee----------cCcHHHHHHHHHHHHhcCCCeeeeeecc--cccccCcccc--------chh
Q 020098 180 IDGLGDAVEQGLVKAVGVS----------NYSEKRLRNAYEKLKKRGIPLASNQVNY--SLIYRKPEEN--------GVK 239 (331)
Q Consensus 180 ~~~L~~l~~~G~i~~iGvs----------~~~~~~l~~~~~~~~~~~~~~~~~q~~~--n~~~~~~~~~--------~~l 239 (331)
-+.++++.+.|- +.+++- .++.+.++++.+.++..++++.+ ..+| |+.+...+.+ ..+
T Consensus 13 ~~~~~~~~~~G~-~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~ls~-h~p~~~nl~s~d~~~r~~~~~~l~~~i 90 (273)
T smart00518 13 YKAFIEAVDIGA-RSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDVSV-HAPYLINLASPDKEKVEKSIERLIDEI 90 (273)
T ss_pred hHHHHHHHHcCC-CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEE-ECCceecCCCCCHHHHHHHHHHHHHHH
Confidence 356666666653 334333 13445677777777777776544 2333 6666554211 377
Q ss_pred HHHHHcCCeEEEc
Q 020098 240 AACDELGITLIAY 252 (331)
Q Consensus 240 ~~~~~~gi~v~a~ 252 (331)
++|++.|...+..
T Consensus 91 ~~A~~lGa~~vv~ 103 (273)
T smart00518 91 KRCEELGIKALVF 103 (273)
T ss_pred HHHHHcCCCEEEE
Confidence 8888889887774
No 410
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=20.59 E-value=7.5e+02 Score=23.63 Aligned_cols=26 Identities=4% Similarity=0.135 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECCcC
Q 020098 72 RKMKAAKAAFDTSLDNGITFFDTAEV 97 (331)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gvn~~Dta~~ 97 (331)
.+.++-.++++.-.+.||+.|+....
T Consensus 65 ~s~e~Ki~ia~~L~~~GV~~IEvGs~ 90 (347)
T PLN02746 65 VPTSVKVELIQRLVSSGLPVVEATSF 90 (347)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 45678888899988999999998743
No 411
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=20.50 E-value=4.4e+02 Score=23.87 Aligned_cols=103 Identities=15% Similarity=0.080 Sum_probs=57.3
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHHc
Q 020098 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ 189 (331)
Q Consensus 110 E~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~~ 189 (331)
-.-+++.|++... ++++|.+=- ++.+...+.++++|++-|.+.. .+. +.......+++.+..+.++..
T Consensus 7 ~~~l~~~l~~~~~----~~~lvv~d~------~t~~~~g~~v~~~l~~~g~~v~-~~~-~~~~~~~~~~~~~~~~~~~~~ 74 (250)
T PF13685_consen 7 LDKLPEILSELGL----KKVLVVTDE------NTYKAAGEKVEESLKSAGIEVA-VIE-EFVGDADEDEVEKLVEALRPK 74 (250)
T ss_dssp GGGHHHHHGGGT-----SEEEEEEET------THHHHHHHHHHHHHHTTT-EEE-EEE--EE---BHHHHHHHHTTS--T
T ss_pred HHHHHHHHHhcCC----CcEEEEEcC------CHHHHHHHHHHHHHHHcCCeEE-EEe-cCCCCCCHHHHHHHHHHhccc
Confidence 4457888887742 466666543 5688899999999999987644 221 111112344444555555444
Q ss_pred CceeEEEeecCcHHHHHHHHHHHHhcCCCeeeeeecc
Q 020098 190 GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (331)
Q Consensus 190 G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~~~~q~~~ 226 (331)
+-=--|||.+-+.-.+.++... +.+.++.++-+--
T Consensus 75 ~~d~ii~vGgG~i~D~~K~~A~--~~~~p~isVPTa~ 109 (250)
T PF13685_consen 75 DADLIIGVGGGTIIDIAKYAAF--ELGIPFISVPTAA 109 (250)
T ss_dssp T--EEEEEESHHHHHHHHHHHH--HHT--EEEEES--
T ss_pred CCCEEEEeCCcHHHHHHHHHHH--hcCCCEEEecccc
Confidence 4335588888877777777643 4456666554433
No 412
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=20.49 E-value=8.7e+02 Score=24.32 Aligned_cols=156 Identities=11% Similarity=0.049 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 020098 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (331)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v 151 (331)
.+++-....++.|.+.|+..|=..+.-.+-+ +.+..+. +.+..+.. -.+.|+-.. ...++.+++.+.+
T Consensus 102 ypddvv~~fv~~a~~~Gidi~Rifd~lnd~~-----n~~~ai~-~ak~~G~~---~~~~i~yt~---sp~~t~~y~~~~a 169 (468)
T PRK12581 102 YADDIVDKFISLSAQNGIDVFRIFDALNDPR-----NIQQALR-AVKKTGKE---AQLCIAYTT---SPVHTLNYYLSLV 169 (468)
T ss_pred CcchHHHHHHHHHHHCCCCEEEEcccCCCHH-----HHHHHHH-HHHHcCCE---EEEEEEEEe---CCcCcHHHHHHHH
Confidence 4457777789999999999776666555411 1233332 33443311 112222222 2345677777777
Q ss_pred HHHHHhhCCCcccEEEeccCCC-CChHHHHHHHHHHHHcCceeEEEeecCcHHHHH--HHHHHHHhcCCCeeeeeecccc
Q 020098 152 KDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLR--NAYEKLKKRGIPLASNQVNYSL 228 (331)
Q Consensus 152 ~~sL~~Lg~d~iDl~~lh~p~~-~~~~~~~~~L~~l~~~G~i~~iGvs~~~~~~l~--~~~~~~~~~~~~~~~~q~~~n~ 228 (331)
++. ..+|. |.+.|-+.-- ..+.++-+.+..+++...+ .||+-.|+...+. ..+..++ . ..+.+....+.
T Consensus 170 ~~l-~~~Ga---d~I~IkDtaG~l~P~~v~~Lv~alk~~~~~-pi~~H~Hnt~GlA~An~laAie-A--Gad~vD~ai~g 241 (468)
T PRK12581 170 KEL-VEMGA---DSICIKDMAGILTPKAAKELVSGIKAMTNL-PLIVHTHATSGISQMTYLAAVE-A--GADRIDTALSP 241 (468)
T ss_pred HHH-HHcCC---CEEEECCCCCCcCHHHHHHHHHHHHhccCC-eEEEEeCCCCccHHHHHHHHHH-c--CCCEEEeeccc
Confidence 664 56785 4555544332 4466666666677665443 4888887543222 2222222 2 34455555555
Q ss_pred cccCccc---cchhHHHHHcCC
Q 020098 229 IYRKPEE---NGVKAACDELGI 247 (331)
Q Consensus 229 ~~~~~~~---~~~l~~~~~~gi 247 (331)
+-..... +.++.+++..|+
T Consensus 242 ~g~gagN~~tE~lv~~L~~~g~ 263 (468)
T PRK12581 242 FSEGTSQPATESMYLALKEAGY 263 (468)
T ss_pred cCCCcCChhHHHHHHHHHhcCC
Confidence 5543221 135666665544
No 413
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=20.42 E-value=1.9e+02 Score=22.63 Aligned_cols=42 Identities=10% Similarity=0.060 Sum_probs=22.4
Q ss_pred HHHHHHHHhhCCCcccEEEeccCCCC--ChHHHHHHHHHHHHcC
Q 020098 149 AALKDSLFRLGLSSVELYQLHWAGIW--GNEGFIDGLGDAVEQG 190 (331)
Q Consensus 149 ~~v~~sL~~Lg~d~iDl~~lh~p~~~--~~~~~~~~L~~l~~~G 190 (331)
..+.+.|+.+....+|.+++...+.. ...+....++.|...|
T Consensus 52 ~~~~~ll~~~~~~~~d~ivv~~~~Rl~R~~~~~~~~~~~l~~~g 95 (137)
T cd00338 52 PGLQRLLADVKAGKIDVVLVEKLDRLSRNLVDLLELLELLEAHG 95 (137)
T ss_pred HHHHHHHHHHHcCCCCEEEEEecchhhCCHHHHHHHHHHHHHCC
Confidence 34444444444455666666666652 2345555555555544
No 414
>PRK08508 biotin synthase; Provisional
Probab=20.41 E-value=6.2e+02 Score=23.07 Aligned_cols=116 Identities=10% Similarity=0.002 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEEecc-CCCCChHHHHHHHHHHHHcC-ceeEEEeecC-cHHHHHHHHHH-HHhcCC
Q 020098 142 LGRQSVLAALKDSLFRLGLSSVELYQLHW-AGIWGNEGFIDGLGDAVEQG-LVKAVGVSNY-SEKRLRNAYEK-LKKRGI 217 (331)
Q Consensus 142 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~-p~~~~~~~~~~~L~~l~~~G-~i~~iGvs~~-~~~~l~~~~~~-~~~~~~ 217 (331)
.+++.|.+.+++..+. |...+-++.--. ++....+-+.+.++.+++++ .+.-....+. +.+.+.++.+. ++..++
T Consensus 40 ~s~eeI~~~a~~a~~~-g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~ 118 (279)
T PRK08508 40 KDIEQIVQEAKMAKAN-GALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNH 118 (279)
T ss_pred CCHHHHHHHHHHHHHC-CCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEcc
Q ss_pred CeeeeeecccccccCccccc---hhHHHHHcCCeEEEcccCccc
Q 020098 218 PLASNQVNYSLIYRKPEENG---VKAACDELGITLIAYCPIAQG 258 (331)
Q Consensus 218 ~~~~~q~~~n~~~~~~~~~~---~l~~~~~~gi~v~a~s~l~~G 258 (331)
...+..-.|.-......-.+ .++.+++.|+.+.+...++-|
T Consensus 119 ~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlG 162 (279)
T PRK08508 119 NLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLG 162 (279)
T ss_pred cccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEecC
No 415
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=20.41 E-value=5.2e+02 Score=24.56 Aligned_cols=89 Identities=9% Similarity=0.074 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 020098 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (331)
Q Consensus 73 ~~~~~~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~ 152 (331)
+.+++.+.++.+.+.|+..+-..-.||- ...+.+.+.+.++
T Consensus 133 ~~~~~~~ai~~l~~~g~~~v~~dli~Gl---------------------------------------Pgqt~e~~~~~l~ 173 (374)
T PRK05799 133 TFEEFLENYKLARKLGFNNINVDLMFGL---------------------------------------PNQTLEDWKETLE 173 (374)
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEeecCC---------------------------------------CCCCHHHHHHHHH
Q ss_pred HHHHhhCCCcccEEE-----------------eccCCCCChHHHHHHHHHHHHcCceeEEEeecCc
Q 020098 153 DSLFRLGLSSVELYQ-----------------LHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYS 201 (331)
Q Consensus 153 ~sL~~Lg~d~iDl~~-----------------lh~p~~~~~~~~~~~L~~l~~~G~i~~iGvs~~~ 201 (331)
...+ ++.++|.++. +..|+.....+.+....+.-.+.=-.++++|||.
T Consensus 174 ~~~~-l~~~~is~y~l~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~ye~~~fa 238 (374)
T PRK05799 174 KVVE-LNPEHISCYSLIIEEGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLKEKGYHQYEISNFA 238 (374)
T ss_pred HHHh-cCCCEEEEeccEecCCCHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCcEEeeeeeE
No 416
>cd08557 PI-PLCc_bacteria_like Catalytic domain of bacterial phosphatidylinositol-specific phospholipase C and similar proteins. This subfamily corresponds to the catalytic domain present in bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and their sequence homologs found in eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Its catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. Eukaryotic homologs in this family are named as phosphatidylinositol-specific phospholipase C X
Probab=20.34 E-value=2.2e+02 Score=25.43 Aligned_cols=19 Identities=26% Similarity=0.634 Sum_probs=14.9
Q ss_pred HHHHHHHCCCCeEECCcCc
Q 020098 80 AFDTSLDNGITFFDTAEVY 98 (331)
Q Consensus 80 ~l~~A~~~Gvn~~Dta~~Y 98 (331)
-|...++.|||+||-=-.+
T Consensus 42 ~i~~QL~~GiR~~dlr~~~ 60 (271)
T cd08557 42 SITDQLDAGVRYLDLRVAY 60 (271)
T ss_pred CHHHHHhcCceEEEEEeee
Confidence 4778889999999965444
No 417
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=20.32 E-value=6.7e+02 Score=22.92 Aligned_cols=81 Identities=12% Similarity=0.112 Sum_probs=53.9
Q ss_pred HHHHHHCCCCeEECC-cCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCC--CCCCCH---HHHHHHHHHH
Q 020098 81 FDTSLDNGITFFDTA-EVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAAL--PWRLGR---QSVLAALKDS 154 (331)
Q Consensus 81 l~~A~~~Gvn~~Dta-~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~--~~~~~~---~~i~~~v~~s 154 (331)
....+...+|.++.= ..|... +++.+-+|.+..+ +++..+.|+... ++.... ..+.+.+.+-
T Consensus 29 ~L~~y~~~f~~VEiN~TFYa~p-------~~~t~~~W~~~~p-----~~FrFsvK~~~~iTH~~~l~~~~~~~~~~~~~~ 96 (263)
T COG1801 29 FLAYYASHFNTVEINSTFYAPP-------SPETVLRWAEETP-----DDFRFSVKAPRAITHQRRLKECDFELWEFFLEP 96 (263)
T ss_pred HHHHHhccCCEEEECCcccCCC-------CHHHHHHHHHhCC-----CCeEEEEEecccccchhhhccchHHHHHHHHHH
Confidence 344556778877743 344432 3899999999775 899999999542 222222 3444555555
Q ss_pred HHhhCCCcccEEEeccCCCC
Q 020098 155 LFRLGLSSVELYQLHWAGIW 174 (331)
Q Consensus 155 L~~Lg~d~iDl~~lh~p~~~ 174 (331)
++.|| +++..+++.-|...
T Consensus 97 ~~~L~-~klg~il~Q~Ppsf 115 (263)
T COG1801 97 LAPLG-ERLGPILFQLPPSF 115 (263)
T ss_pred HHhhh-cccceEEEecCCcc
Confidence 66777 58999999998763
No 418
>PRK09389 (R)-citramalate synthase; Provisional
Probab=20.30 E-value=8.8e+02 Score=24.31 Aligned_cols=25 Identities=4% Similarity=-0.007 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECCc
Q 020098 72 RKMKAAKAAFDTSLDNGITFFDTAE 96 (331)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gvn~~Dta~ 96 (331)
.+.++-.++.+.-.+.||..|+...
T Consensus 21 ~s~e~K~~ia~~L~~~Gv~~IE~G~ 45 (488)
T PRK09389 21 LTPEEKLEIARKLDELGVDVIEAGS 45 (488)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 4557888888888899999999864
No 419
>PRK08905 lipid A biosynthesis lauroyl acyltransferase; Validated
Probab=20.27 E-value=5.9e+02 Score=23.27 Aligned_cols=63 Identities=13% Similarity=0.153 Sum_probs=38.1
Q ss_pred HHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHh
Q 020098 78 KAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFR 157 (331)
Q Consensus 78 ~~~l~~A~~~Gvn~~Dta~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~ 157 (331)
.+.++.+++.|=..|=.+.|||| =++.|.++... ..+.+..|- .....+.+-+++..++
T Consensus 90 ~e~l~~a~~~gkgvIllt~H~Gn---------wE~~~~~~~~~------~~~~~v~r~------~~n~~~~~~~~~~R~~ 148 (289)
T PRK08905 90 WEHVEAALAEGRGILFLTPHLGC---------FEVTARYIAQR------FPLTAMFRP------PRKAALRPLMEAGRAR 148 (289)
T ss_pred HHHHHHHHhcCCCEEEEecccch---------HHHHHHHHHhc------CCceEEEEC------CCCHHHHHHHHHHhcc
Confidence 35567777777777777788887 67777777643 244444443 2334455555555555
Q ss_pred hCCC
Q 020098 158 LGLS 161 (331)
Q Consensus 158 Lg~d 161 (331)
.|..
T Consensus 149 ~g~~ 152 (289)
T PRK08905 149 GNMR 152 (289)
T ss_pred cCCc
Confidence 5544
No 420
>PRK14865 rnpA ribonuclease P; Provisional
Probab=20.26 E-value=4.3e+02 Score=20.68 Aligned_cols=60 Identities=13% Similarity=0.130 Sum_probs=40.3
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhh--CCCcccEEEeccCCC--CChHHHHHHHHHHHH
Q 020098 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRL--GLSSVELYQLHWAGI--WGNEGFIDGLGDAVE 188 (331)
Q Consensus 126 R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~L--g~d~iDl~~lh~p~~--~~~~~~~~~L~~l~~ 188 (331)
|=.+.|+=|+|. ...+..+++.+.++.+.. .....|++++-.+.. .+..++-+.|..+.+
T Consensus 46 RvG~sVsKKvg~---AV~RNRiKR~lRE~~R~~~~~l~~~divii~r~~~~~~~~~~l~~~l~~ll~ 109 (116)
T PRK14865 46 KIGITVSRKVGN---AVVRNRIKRLVREFYRLNKSLFIVADYNIIAKKGAEQLDFQQISRELANALE 109 (116)
T ss_pred EEEEEEecccCc---chhHHHHHHHHHHHHHHhhccCCCCCEEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 667888888763 567888888888888753 223569988877654 345555555555543
No 421
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=20.25 E-value=6.6e+02 Score=22.85 Aligned_cols=107 Identities=13% Similarity=0.075 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcccEEEeccC-CC---CChHHHHHHHHHHHHc--Cce-eEEEeecCcHHHHHHHHHHHH
Q 020098 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWA-GI---WGNEGFIDGLGDAVEQ--GLV-KAVGVSNYSEKRLRNAYEKLK 213 (331)
Q Consensus 141 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p-~~---~~~~~~~~~L~~l~~~--G~i-~~iGvs~~~~~~l~~~~~~~~ 213 (331)
..+.+.+++.++..++ -| +|-+++-.. .. ...+|-.+.++..++. |++ -.+|++..+.+...++.+.++
T Consensus 15 ~iD~~~~~~~i~~l~~-~G---v~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~ 90 (285)
T TIGR00674 15 SVDFAALEKLIDFQIE-NG---TDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAE 90 (285)
T ss_pred CcCHHHHHHHHHHHHH-cC---CCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHH
Confidence 4566666666665554 34 455554322 11 3445545555544443 443 457777777777767767677
Q ss_pred hcCCCeeeeeecccccccCccccchhHH----HHHcCCeEEEccc
Q 020098 214 KRGIPLASNQVNYSLIYRKPEENGVKAA----CDELGITLIAYCP 254 (331)
Q Consensus 214 ~~~~~~~~~q~~~n~~~~~~~~~~~l~~----~~~~gi~v~a~s~ 254 (331)
..|..-.++..++..-- ..+ +++++ |..-++.++.|..
T Consensus 91 ~~Gad~v~v~pP~y~~~-~~~--~i~~~~~~i~~~~~~pi~lYn~ 132 (285)
T TIGR00674 91 DVGADGFLVVTPYYNKP-TQE--GLYQHFKAIAEEVDLPIILYNV 132 (285)
T ss_pred HcCCCEEEEcCCcCCCC-CHH--HHHHHHHHHHhcCCCCEEEEEC
Confidence 77766555555543321 111 24443 3344677776643
No 422
>PRK10508 hypothetical protein; Provisional
Probab=20.10 E-value=1.5e+02 Score=28.07 Aligned_cols=43 Identities=9% Similarity=0.108 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEEeccCCCCChHHHHHHHHHHHH
Q 020098 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVE 188 (331)
Q Consensus 142 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lh~p~~~~~~~~~~~L~~l~~ 188 (331)
.+++.|.+.+++..+++|+|.+ +++.+. .+.++.++.++-|.+
T Consensus 286 Gtpe~V~~kl~~l~~~~g~del-~~~~~~---~~~e~~~~S~~lla~ 328 (333)
T PRK10508 286 GDKAKVRHGLQSILRETQADEI-MVNGQI---FDHQARLHSFELAMD 328 (333)
T ss_pred eCHHHHHHHHHHHHHHHCcCEE-EEECCC---CCHHHHHHHHHHHHH
Confidence 5789999999999999998877 233332 455666666665554
No 423
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=20.08 E-value=8e+02 Score=23.71 Aligned_cols=24 Identities=13% Similarity=0.030 Sum_probs=17.4
Q ss_pred CchhhHHHHHHHHHHHHHCCCCeE
Q 020098 69 WDDRKMKAAKAAFDTSLDNGITFF 92 (331)
Q Consensus 69 ~~~~~~~~~~~~l~~A~~~Gvn~~ 92 (331)
+...+.++..+-++...+.|++.|
T Consensus 164 ~r~r~~e~I~~Ei~~l~~~g~~ei 187 (414)
T TIGR01579 164 SRSVPMEAILKQVKILVAKGYKEI 187 (414)
T ss_pred CccCCHHHHHHHHHHHHHCCCceE
Confidence 444566777777888888888755
No 424
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=20.06 E-value=8.2e+02 Score=23.86 Aligned_cols=101 Identities=16% Similarity=0.141 Sum_probs=57.2
Q ss_pred HHHHHHHHHhccCCC-CCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCC--cccEEEeccCCCCC-----hHHHHH
Q 020098 110 ETLLGRFIKERKQRD-PEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS--SVELYQLHWAGIWG-----NEGFID 181 (331)
Q Consensus 110 E~~iG~~l~~~~~~~-~R~~~~i~tK~~~~~~~~~~~~i~~~v~~sL~~Lg~d--~iDl~~lh~p~~~~-----~~~~~~ 181 (331)
|+-+-+++...-.+. +.+=++|.|=+- .+-|-..++...+++..+ -++++.+|-|.... .+.+++
T Consensus 81 ~~~L~~ai~ei~~~~~~P~~I~V~tTC~-------~e~IGDDi~~v~~e~~~~~~~~pvv~v~t~Gf~g~~~~G~~~~~~ 153 (427)
T PRK02842 81 NEELDRVVEELIKRRPNISVLFLVGSCP-------SEVIKLDLEGLAERLSTEFAGVPVLNYSGSGLETTFTQGEDAVLA 153 (427)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEECCCh-------HHhhcCCHHHHHHHhhcccCCCeEEEeeCCCccccHHHHHHHHHH
Confidence 888888887732222 245677777663 444444555555555433 36788888887632 233333
Q ss_pred HHHHHH-----HcCceeEEEeecCcHHHHHHHHHHHHhcCCCe
Q 020098 182 GLGDAV-----EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPL 219 (331)
Q Consensus 182 ~L~~l~-----~~G~i~~iGvs~~~~~~l~~~~~~~~~~~~~~ 219 (331)
+|-+.. ..+.|.-+|..+ .....++.+.++..|+.+
T Consensus 154 alv~~~~~~~~~~~~VniiG~~~--~~d~~el~~lL~~~Gi~v 194 (427)
T PRK02842 154 ALVPFCPEAPADHPSLVLVGSLA--DVVEDQLTLEFKKLGIGV 194 (427)
T ss_pred HHhhhcccccCCCCcEEEEEeCC--cchHHHHHHHHHHcCCee
Confidence 333322 246688888754 333455555567777655
No 425
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=20.04 E-value=7.2e+02 Score=23.19 Aligned_cols=167 Identities=14% Similarity=0.136 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHHHHCCCCeEECC----cCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHH
Q 020098 73 KMKAAKAAFDTSLDNGITFFDTA----EVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL 148 (331)
Q Consensus 73 ~~~~~~~~l~~A~~~Gvn~~Dta----~~Yg~g~~~~~~~sE~~iG~~l~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~ 148 (331)
+.++..+.++++.+.|++.+=.. +.|.++. ...+.+.++...... .++.|-.=.. +...+.+.
T Consensus 92 ~~eei~~~a~~~~~~GlkevvLTsv~~ddl~d~g-------~~~l~~li~~I~~~~--p~i~Ievl~~--d~~g~~e~-- 158 (302)
T TIGR00510 92 DPEEPAKLAETIKDMGLKYVVITSVDRDDLEDGG-------ASHLAECIEAIREKL--PNIKIETLVP--DFRGNIAA-- 158 (302)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeecCCCccccc-------HHHHHHHHHHHHhcC--CCCEEEEeCC--cccCCHHH--
Confidence 45778899999999999966432 2343321 345777777664211 1222222110 01112222
Q ss_pred HHHHHHHHhhCCCcccE-------EEeccCCCCChHHHHHHHHHHHHc--Cc-e---eEEEeecCcHHHHHHHHHHHHhc
Q 020098 149 AALKDSLFRLGLSSVEL-------YQLHWAGIWGNEGFIDGLGDAVEQ--GL-V---KAVGVSNYSEKRLRNAYEKLKKR 215 (331)
Q Consensus 149 ~~v~~sL~~Lg~d~iDl-------~~lh~p~~~~~~~~~~~L~~l~~~--G~-i---~~iGvs~~~~~~l~~~~~~~~~~ 215 (331)
++. +..-|.|.+-. ++=+--.....+..++.++.+++. |. + --+|+ +-+.+++.+.+..++..
T Consensus 159 --l~~-l~~aG~dv~~hnlEt~~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi~~~TgiIVGl-GETeee~~etl~~Lrel 234 (302)
T TIGR00510 159 --LDI-LLDAPPDVYNHNLETVERLTPFVRPGATYRWSLKLLERAKEYLPNLPTKSGIMVGL-GETNEEIKQTLKDLRDH 234 (302)
T ss_pred --HHH-HHHcCchhhcccccchHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeecceEEEEC-CCCHHHHHHHHHHHHhc
Confidence 211 12223222111 110000114567888999999987 32 2 25788 77888888888887776
Q ss_pred CCCe-eeee---e-ccc-cccc----CccccchhHHHHHcCCeEEEcccCcc
Q 020098 216 GIPL-ASNQ---V-NYS-LIYR----KPEENGVKAACDELGITLIAYCPIAQ 257 (331)
Q Consensus 216 ~~~~-~~~q---~-~~n-~~~~----~~~~~~~l~~~~~~gi~v~a~s~l~~ 257 (331)
+... .+.| . .-+ ++.+ +.++ .+-+.+.+.|...++.+||-.
T Consensus 235 g~d~v~igqYl~p~~~~~~v~~~~~p~~f~-~~~~~a~~~gf~~v~~~p~vr 285 (302)
T TIGR00510 235 GVTMVTLGQYLRPSRRHLPVKRYVSPEEFD-YYRSVALEMGFLHAACGPFVR 285 (302)
T ss_pred CCCEEEeecccCCCCCCCccccCCCHHHHH-HHHHHHHHcCChheEecccch
Confidence 6432 2222 2 111 1111 1111 356667778888888888875
Done!