RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 020099
(331 letters)
>1qdl_A Protein (anthranilate synthase (TRPE-subunit)); tryptophan
biosynthesis, glutamine amidotransferase, allosteric
interaction, lyase; 2.50A {Sulfolobus solfataricus}
SCOP: d.161.1.1
Length = 422
Score = 465 bits (1200), Expect = e-165
Identities = 126/318 (39%), Positives = 171/318 (53%), Gaps = 20/318 (6%)
Query: 6 NLVARVHDIVPPRLRKGSIKLHTRHFGPKLESSSMTSEAYKEAVLQAKEHILAGDIFQIV 65
+ +V+ G + S+ +Y+ V ++ E+I +G IFQ+V
Sbjct: 124 HNEGKVYVNADLSSVGGCGDIGEFK--VSFYDESLNKNSYERIVSESLEYIRSGYIFQVV 181
Query: 66 LSQRFERRTFADPFEIYRALRIVNPSPYMTYLQARGCILVASSPEILTRVKKRKITNRPL 125
LS+ + DP IY LR +NPSPYM YL+ L+ SSPE+L RV+ + P+
Sbjct: 182 LSRFYRYIFSGDPLRIYYNLRRINPSPYMFYLKFDEKYLIGSSPELLFRVQDNIVETYPI 241
Query: 126 AGTVRRGKTPKEDLVFEKELLNDEKQCAEHIMLVDLGRNDVGKVSKSGSVKVEKLMNIEH 185
AGT RG +EDL E EL+N EK AEH+MLVDL RND+GKV G+VKV +LM +E
Sbjct: 242 AGTRPRGADQEEDLKLELELMNSEKDKAEHLMLVDLARNDLGKVCVPGTVKVPELMYVEK 301
Query: 186 YSHVMHISSTVTGELLDHLTSWDALRAALPVGTVSGAPKVKAMELIDELEVTRRGPYSGG 245
YSHV HI S V G L + + L A P GTVSGAPK AM +I+ LE +RGPY+G
Sbjct: 302 YSHVQHIVSKVIGTLKKKYNALNVLSATFPAGTVSGAPKPMAMNIIETLEEYKRGPYAGA 361
Query: 246 FGGISFTGDMDIALALRTIVFPTATRYDTMYSYKDVDKRREWIAHLQAGAGIVADSDPND 305
G IS G+ + A+A+RT + + + AGAGIV DS+P
Sbjct: 362 VGFISADGNAEFAIAIRTAFL------------------NKELLRIHAGAGIVYDSNPES 403
Query: 306 EQKECENKAAGIARAIDL 323
E E E+K + AI +
Sbjct: 404 EYFETEHKLKALKTAIGV 421
>1i1q_A Anthranilate synthase component I; tryptophan biosynthesis, lyase;
HET: TRP; 1.90A {Salmonella typhimurium} SCOP: d.161.1.1
PDB: 1i7q_A 1i7s_A*
Length = 520
Score = 443 bits (1141), Expect = e-155
Identities = 116/330 (35%), Positives = 166/330 (50%), Gaps = 28/330 (8%)
Query: 5 ENLVARVHDIVPPRLRKGSIKLHTRHFGPKLESSSMTSEAYKEAVLQAKEHILAGDIFQI 64
+ L AR+ + +L + + L + + +A+ V Q ++ I AG+IFQ+
Sbjct: 206 QRLNARLAYLSQ-QLTQPAPPLPVTPVPDMRCECNQSDDAFGAVVRQLQKAIRAGEIFQV 264
Query: 65 VLSQRFERRTFADPFEIYRALRIVNPSPYMTYLQARGCILVASSPEILTRVKK--RKITN 122
V S+RF P Y L+ NPSPYM ++Q L +SPE + R+I
Sbjct: 265 VPSRRFSLP-CPSPLAAYYVLKKSNPSPYMFFMQDNDFTLFGASPESSLKYDAASRQIEI 323
Query: 123 RPLAGTVRRGKTP------KEDLVFEKELLNDEKQCAEHIMLVDLGRNDVGKVSKSGSVK 176
P+AGT RG+ D E ++ D K+ +EH+MLVDL RND+ ++ GS
Sbjct: 324 YPIAGTRPRGRRADGTLDRDLDSRIELDMRTDHKELSEHLMLVDLARNDLARICTPGSRY 383
Query: 177 VEKLMNIEHYSHVMHISSTVTGELLDHLTSWDALRAALPVGTVSGAPKVKAMELIDELEV 236
V L ++ YS+VMH+ S V GEL L + A RA + +GT+SGAPKV+AM+LI + E
Sbjct: 384 VADLTKVDRYSYVMHLVSRVVGELRHDLDALHAYRACMNMGTLSGAPKVRAMQLIADAEG 443
Query: 237 TRRGPYSGGFGGISFTGDMDIALALRTIVFPTATRYDTMYSYKDVDKRREWIAHLQAGAG 296
RRG Y G G + GD+D + +R+ + IA +QAGAG
Sbjct: 444 QRRGSYGGAVGYFTAHGDLDTCIVIRSALV------------------ENGIATVQAGAG 485
Query: 297 IVADSDPNDEQKECENKAAGIARAIDLAES 326
IV DS P E E NKA + RAI A
Sbjct: 486 IVLDSVPQSEADETRNKARAVLRAIATAHH 515
>1k0e_A P-aminobenzoate synthase component I; aminodeoxychorismate
synthase, chorismate, glutamine, tryptophan, PABA
synthase, lyase; HET: TRP; 2.00A {Escherichia coli}
SCOP: d.161.1.1 PDB: 1k0g_A*
Length = 453
Score = 440 bits (1134), Expect = e-154
Identities = 103/286 (36%), Positives = 158/286 (55%), Gaps = 18/286 (6%)
Query: 37 SSSMTSEAYKEAVLQAKEHILAGDIFQIVLSQRFERRTFADPFEIYRALRIVNPSPYMTY 96
S+MT E Y E Q +E++ +GD +Q+ L+QRF D ++ + L N +P+ +
Sbjct: 185 QSNMTREQYGEKFRQVQEYLHSGDCYQVNLAQRFHATYSGDEWQAFLQLNQANRAPFSAF 244
Query: 97 LQARGCILVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHI 156
L+ +++ SPE +I RP+ GT+ R P+ED +L N K AE++
Sbjct: 245 LRLEQGAILSLSPERFILCDNSEIQTRPIKGTLPRLPDPQEDSKQAVKLANSAKDRAENL 304
Query: 157 MLVDLGRNDVGKVSKSGSVKVEKLMNIEHYSHVMHISSTVTGELLDHLTSWDALRAALPV 216
M+VDL RND+G+V+ +GSVKV +L +E + V H+ ST+T +L + L + D LRAA P
Sbjct: 305 MIVDLMRNDIGRVAVAGSVKVPELFVVEPFPAVHHLVSTITAQLPEQLHASDLLRAAFPG 364
Query: 217 GTVSGAPKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTATRYDTMY 276
G+++GAPKV+AME+IDELE RR + G G +SF G+MD ++ +RT+
Sbjct: 365 GSITGAPKVRAMEIIDELEPQRRNAWCGSIGYLSFCGNMDTSITIRTLTA---------- 414
Query: 277 SYKDVDKRREWIAHLQAGAGIVADSDPNDEQKECENKAAGIARAID 322
AG GIVADS E +E +K I + ++
Sbjct: 415 --------INGQIFCSAGGGIVADSQEEAEYQETFDKVNRILKQLE 452
>2fn0_A Salicylate synthetase, IRP9; salicylate synthase, siderophore,
transcription; 1.85A {Yersinia enterocolitica} SCOP:
d.161.1.1 PDB: 2fn1_A*
Length = 437
Score = 431 bits (1110), Expect = e-151
Identities = 89/322 (27%), Positives = 133/322 (41%), Gaps = 30/322 (9%)
Query: 2 NRLENLVARVHDIVPPRLRKGSIKLHTRHFGPKLESSSMTSEAYKEAVLQAKEHILAGDI 61
+ L V + P +++ EAYK+ V +A I G+
Sbjct: 146 DGCRRLCEWVKEASTTTQNA-----------PLAVDTALNGEAYKQQVARAVAEIRRGEY 194
Query: 62 FQIVLSQRFERRTFADPFEIYRALRIVNPSPYMTYLQARGCILVASSPEILTRVKKRKIT 121
++++S+ + D R N + G + SPE++ V K+
Sbjct: 195 VKVIVSRAIPLPSRIDMPATLLYGRQANTPVRSFMFRQEGREALGFSPELVMSVTGNKVV 254
Query: 122 NRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHIMLVDLGRNDVGKVSKSGSVKVEKLM 181
PLAGT R P+ + E ELL+D K+ EHI+ V ++ V GSV VE LM
Sbjct: 255 TEPLAGTRDRMGNPEHNKAKEAELLHDSKEVLEHILSVKEAIAELEAVCLPGSVVVEDLM 314
Query: 182 NIEHYSHVMHISSTVTGELLDHLTSWDALRAALPVGTVSGAPKVKAMELIDELEVTRRGP 241
++ V H+ S V+G+L ++ +WDA P T SG PK A+ I ++E T R
Sbjct: 315 SVRQRGSVQHLGSGVSGQLAENKDAWDAFTVLFPSITASGIPKNAALNAIMQIEKTPREL 374
Query: 242 YSGGFGGISFTGDMDIALALRTIVFPTATRYDTMYSYKDVDKRREWIAHLQAGAGIVADS 301
YSG + D AL LR++ +QAGAGI+A S
Sbjct: 375 YSGAILLLDD-TRFDAALVLRSVFQ------------------DSQRCWIQAGAGIIAQS 415
Query: 302 DPNDEQKECENKAAGIARAIDL 323
P E E K A IA + +
Sbjct: 416 TPERELTETREKLASIAPYLMV 437
>3log_A Isochorismate synthase/isochorismate-pyruvate LYA; salicylate,
anthranilate, isochor synthase, isochorismate lyase, ION
transport; 1.73A {Mycobacterium tuberculosis} PDB:
2i6y_A 2g5f_A
Length = 451
Score = 431 bits (1109), Expect = e-151
Identities = 79/286 (27%), Positives = 118/286 (41%), Gaps = 19/286 (6%)
Query: 37 SSSMTSEAYKEAVLQAKEHILAGDIFQIVLSQRFERRTFADPFEIYRALRIVNPSPYMTY 96
S ++ V A + I AG +++LS+ E D YR R N
Sbjct: 181 DVSDDPSGFRRRVAVAVDEIAAGRYHKVILSRCVEVPFAIDFPLTYRLGRRHNTPVRSFL 240
Query: 97 LQARGCILVASSPEILTRVKK-RKITNRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEH 155
LQ G + SPE++T V+ + PLAGT G+ P D + +L ++ K+ EH
Sbjct: 241 LQLGGIRALGYSPELVTAVRADGVVITEPLAGTRALGRGPAIDRLARDDLESNSKEIVEH 300
Query: 156 IMLVDLGRNDVGKVSKSGSVKVEKLMNIEHYSHVMHISSTVTGELLDHLTSWDALRAALP 215
+ V ++ +++ GS V M + V H+ ST+ L AL A P
Sbjct: 301 AISVRSSLEEITDIAEPGSAAVIDFMTVRERGSVQHLGSTIRARLDPSSDRMAALEALFP 360
Query: 216 VGTVSGAPKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTATRYDTM 275
T SG PK +E I L+ RG YSG +S G +D AL LR
Sbjct: 361 AVTASGIPKAAGVEAIFRLDECPRGLYSGAVVMLSADGGLDAALTLRAAYQ--------- 411
Query: 276 YSYKDVDKRREWIAHLQAGAGIVADSDPNDEQKECENKAAGIARAI 321
L+AGAGI+ +S+P E +E K + + +
Sbjct: 412 ---------VGGRTWLRAGAGIIEESEPEREFEETCEKLSTLTPYL 448
>3h9m_A P-aminobenzoate synthetase, component I; para-aminobenzoate
synthetase, cytophaga hutchinsonii,YP_678417.1,
CHU_1808; HET: PGE; 1.57A {Cytophaga hutchinsonii atcc
33406}
Length = 436
Score = 412 bits (1061), Expect = e-144
Identities = 78/292 (26%), Positives = 143/292 (48%), Gaps = 16/292 (5%)
Query: 37 SSSMTSEAYKEAVLQAKEHILAGDIFQIVLSQRFERRTFADPFEIYRALRIVNPSPYMTY 96
++ E+Y A + ++ I GD ++I F + P Y+ L P P+ Y
Sbjct: 157 KQVVSKESYFNAFDELQQIIAQGDAYEINYCIPFTAKGNISPAATYQRLNKKTPMPFSVY 216
Query: 97 LQARGCILVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHI 156
+ ++++SPE + I ++P+ GT +RGK+ ED + +++L EK+ +E+
Sbjct: 217 YKFNTEYILSASPERFIKKTGDTIISQPIKGTSKRGKSKAEDEMLKQQLGTSEKEQSENT 276
Query: 157 MLVDLGRNDVGKVSKSGSVKVEKLMNIEHYSHVMHISSTVTGELLDHLTSWDALRAALPV 216
M+VDL RND+ + + +GSV V +L + + +V + STV + +S D ++ A P+
Sbjct: 277 MIVDLVRNDLSRTAVAGSVCVPELSGLYTFPNVHQLISTVQSTIDPACSSIDVIQQAFPM 336
Query: 217 GTVSGAPKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTATRYDTMY 276
G+++GAPKV M+ ID +E RGP+SG G + + D + +R+I
Sbjct: 337 GSMTGAPKVNVMKFIDRIESMARGPFSGTVGYMDPHDNFDFNVLIRSIF----------- 385
Query: 277 SYKDVDKRREWIAHLQAGAGIVADSDPNDEQKECENKAAGIARAIDLAESSF 328
Y + ++AG+ I + + E +EC K + ++ E
Sbjct: 386 -YNSATQE----LFMEAGSAITSYAKAETEYEECLLKITPMIHILNNQEGHH 432
>3os6_A Isochorismate synthase DHBC; structural genomics, center for
structural genomics of infec diseases, csgid, isomerase;
HET: MSE 15P; 2.40A {Bacillus anthracis}
Length = 399
Score = 361 bits (929), Expect = e-124
Identities = 83/334 (24%), Positives = 137/334 (41%), Gaps = 29/334 (8%)
Query: 7 LVARVHDIVPPRLRKGSIKLHTRHFGPKLESSSMTSEAYKEAVLQAKEHILAGDIFQIVL 66
+V I + L + E Y + V Q E I GD+ +IVL
Sbjct: 86 IVPEYSRISERLQLDPTNHLEINRNLTFEMTPVPDHEVYMKGVKQGIEKIKDGDLKKIVL 145
Query: 67 SQRFERRTFA--DPFEIYRALRIVNPSPYMTYL------QARGCILVASSPEILTRVKKR 118
S+ + ++ D ++ R L N Y + L+ +SPE+L
Sbjct: 146 SRSLDVKSSGKIDKQKLLRELAEHNKHGYTFAVNLPKDENENSKTLIGASPELLVSRHGM 205
Query: 119 KITNRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHIMLVDLGRNDVGKVSKSGSVKVE 178
++ + PLAG+ R P ED +ELL+ K EH ++V+ + ++ V
Sbjct: 206 QVISNPLAGSRPRSDDPVEDKRRAEELLSSPKDLHEHAVVVEAVAAALRPYCH--TLYVP 263
Query: 179 KLMNIEHYSHVMHISSTVTGELLD-HLTSWDALRAALPVGTVSGAPKVKAMELIDELEVT 237
+ ++ H + H+S+ V GEL + + +S + A P V G P +A E I ++E
Sbjct: 264 EKPSVIHSEAMWHLSTEVKGELKNPNTSSLELAIALHPTPAVCGTPMEEAREAIQKIEPF 323
Query: 238 RRGPYSGGFGGISFTGDMDIALALRTIVFPTATRYDTMYSYKDVDKRREWIAHLQAGAGI 297
R ++G G GD + + +R V + L AGAG+
Sbjct: 324 DREFFTGMLGWSDLNGDGEWIVTIRCAE---------------VQENT---LRLYAGAGV 365
Query: 298 VADSDPNDEQKECENKAAGIARAIDLAESSFVDK 331
VA+S P DE E K + +A+ L +SS +K
Sbjct: 366 VAESKPEDELAETSAKFQTMLKALGLNDSSLNEK 399
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel,
chorismate, type 1 glutamine amidotransfera phenazine
biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP}
PDB: 3r74_A* 3r76_A*
Length = 645
Score = 363 bits (934), Expect = e-122
Identities = 69/335 (20%), Positives = 118/335 (35%), Gaps = 36/335 (10%)
Query: 3 RLENLVARVHDIVPPRLRKGSIKLHTRHFGPKLESSSMTSEAYKEAVLQA-KEHILAGDI 61
L + H+ V +L +I G + EAY E V + + I G
Sbjct: 92 PLVAITCDEHETVSAQLALAAIPDADTALGE--RHFDIDDEAYAEIVERVITDEIGTGAG 149
Query: 62 FQIVLSQRFERR----TFADPFEIY-RALRIVNPSPYMTYLQARGCILVASSPEILTRVK 116
V+ + E + A ++ R +R + ++ + V ++PE +
Sbjct: 150 SNFVIKRTLEGDLDDYSPAKALAVFKRLMRREVGAYWIFVIHTGERTFVGATPERHLTLH 209
Query: 117 KRKITNRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHIMLVDLGRNDVGKVSKSG-SV 175
+ T P++GT R ++ L D K+ E M++D + ++ +G V
Sbjct: 210 EGCATMNPISGTYRYPQSGPTIDGIN-AFLGDRKESDELYMVLDEELKMMARICPAGGQV 268
Query: 176 KVEKLMNIEHYSHVMHISSTVTGELLDHLTSWDALRAALPVGTVSGAPKVKAMELIDELE 235
L + +H + + G D LR + TV+G+P A +I E
Sbjct: 269 TGPHLREMARLAHTEYF---IVGHT--EADVRDLLRETMFAPTVTGSPIESATRVIARHE 323
Query: 236 VTRRGPYSGGFGGISFTG----DMDIALALRTIVFPTATRYDTMYSYKDVDKRREWIAHL 291
RG YSG I +D A+ +RT R +
Sbjct: 324 RAGRGYYSGIAALIGRDARGGRTLDSAILIRTAEI-----------------DRAGHVRI 366
Query: 292 QAGAGIVADSDPNDEQKECENKAAGIARAIDLAES 326
G+ +V SD E E K A ++ A D E+
Sbjct: 367 GVGSTLVRHSDAVSEVMETHAKVAALSNAFDPPEA 401
>3hwo_A Isochorismate synthase ENTC; chorismate-utilizing enzymes,
siderophore, enterobactin, enterobactin biosynthesis,
ION T iron, iron transport; HET: ISC; 2.30A {Escherichia
coli}
Length = 394
Score = 331 bits (851), Expect = e-112
Identities = 64/291 (21%), Positives = 112/291 (38%), Gaps = 23/291 (7%)
Query: 36 ESSSMTSEAYKEAVLQAKEHILAGDIFQIVLSQRFERRTFA--DPFEIYRALRIVNPSPY 93
+ +++ V +A + ++VLS+ + T A D + L NP Y
Sbjct: 123 RQAIPEQTTFEQMVARAAALTATPQVDKVVLSRLIDITTDAAIDSGVLLERLIAQNPVSY 182
Query: 94 MTYLQ-ARGCILVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDLVFEKELLNDEKQC 152
++ A G +L+ +SPE+L R + ++ PLAG+ RR D LL EK
Sbjct: 183 NFHVPLADGGVLLGASPELLLRKDGERFSSIPLAGSARRQPDEVLDREAGNRLLASEKDR 242
Query: 153 AEHIMLVDLGRNDVGKVSKSGSVKVEKLMNIEHYSHVMHISSTVTGELLDHLTSWDALRA 212
EH ++ + + + S + V + + H+++ G+ +
Sbjct: 243 HEHELVTQAMKEVLRERS--SELHVPSSPQLITTPTLWHLATPFEGKANSQENALTLACL 300
Query: 213 ALPVGTVSGAPKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTATRY 272
P +SG P A ++I ELE R + G G G+ + + +R
Sbjct: 301 LHPTPALSGFPHQAATQVIAELEPFDRELFGGIVGWCDSEGNGEWVVTIRCAK------- 353
Query: 273 DTMYSYKDVDKRREWIAHLQAGAGIVADSDPNDEQKECENKAAGIARAIDL 323
+ + + L AGAGIV S P E +E K + + L
Sbjct: 354 --------LRENQ---VRLFAGAGIVPASSPLGEWRETGVKLSTMLNVFGL 393
>3bzm_A Menaquinone-specific isochorismate synthase; isomerase, menaquinone
biosynthesis; HET: CIT; 1.95A {Escherichia coli} SCOP:
d.161.1.1 PDB: 2eua_A* 3bzn_A
Length = 431
Score = 331 bits (852), Expect = e-112
Identities = 67/301 (22%), Positives = 119/301 (39%), Gaps = 26/301 (8%)
Query: 26 LHTRHFGPKLESSSMTSEAYKEAVLQAKEHILAGDIFQIVLSQRFERRTFA--DPFEIYR 83
L H E + + + A + I G++ ++VL++ + + + +
Sbjct: 153 LPGLHLTTTREQHWPDKTGWTQLIELATKTIAEGELDKVVLARATDLHFASPVNAAAMMA 212
Query: 84 ALRIVNPSPYMTYLQARG-CILVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDLVFE 142
A R +N + Y Y+ G + SSPE L R + + + LAGTV K+
Sbjct: 213 ASRRLNLNCYHFYMAFDGENAFLGSSPERLWRRRDKALRTEALAGTVANNPDDKQAQQLG 272
Query: 143 KELLNDEKQCAEHIMLVDLGRNDVGKVSKSGSVKVEKLMNIEHYSHVMHISSTVTGELLD 202
+ L+ D+K E++++V+ + +++ V + V H+ + L
Sbjct: 273 EWLMADDKNQRENMLVVEDICQRLQADTQTLDVLP---PQVLRLRKVQHLRRCIWTSLNK 329
Query: 203 HLTSWDALRAALPVGTVSGAPKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALR 262
L P V+G P+ A + I E R Y+G G +S + ++LR
Sbjct: 330 A-DDVICLHQLQPTAAVAGLPRDLARQFIARHEPFTREWYAGSAGYLSL-QQSEFCVSLR 387
Query: 263 TIVFPTATRYDTMYSYKDVDKRREWIAHLQAGAGIVADSDPNDEQKECENKAAGIARAID 322
+ + L AGAGIV SDP E +E +NKAAG+ +
Sbjct: 388 SAK---------------ISGNV---VRLYAGAGIVRGSDPEQEWQEIDNKAAGLRTLLQ 429
Query: 323 L 323
+
Sbjct: 430 M 430
>3gse_A Menaquinone-specific isochorismate synthase; MENF,yersinia P CO92,
YPO2528, csgid, isomerase, structural genomics; 2.28A
{Yersinia pestis}
Length = 458
Score = 315 bits (810), Expect = e-105
Identities = 74/325 (22%), Positives = 128/325 (39%), Gaps = 32/325 (9%)
Query: 4 LENLVARVHDIVPPRLRKGSIKLHTRHFGPKLESSSMTSEAYKEAVLQAKEHILAGDIFQ 63
+ + ++ R L + + S + ++ + QA I + +
Sbjct: 158 ALQAITFIDQLMAAR------ALPVLNARIQHSSHTPGYPQWRNLIQQALNDIEQQKLDK 211
Query: 64 IVLSQRFERRTFA--DPFEIYRALRIVNPSPYMTYLQ-ARGCILVASSPEILTRVKKRKI 120
+VL++ A R VN Y L+ + SSPE L ++ +
Sbjct: 212 VVLARTTTLTLNKPLSCAAFMAASRQVNHRCYHFMLRFDDRQAFLGSSPERLYLRQQLHL 271
Query: 121 TNRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHIMLVDLGRNDVGKVSKSGSVKVEKL 180
LAGTV + + V L++DEK E++++VD + + V
Sbjct: 272 ETEALAGTVSNLDSDPQAAVLADWLMHDEKNQRENLLVVDDICQRLQGGVTAVDVMP--- 328
Query: 181 MNIEHYSHVMHISSTVTGELLDHLTSWDALRAALPVGTVSGAPKVKAMELIDELEVTRRG 240
I V H+ + +L + D L+ P V+G P+ A + I + E+ RG
Sbjct: 329 PEIIRLRKVQHLRRRICAQLSRA-SDTDCLQRLQPTAAVAGLPREAARQFIAKHELFSRG 387
Query: 241 PYSGGFGGISFTGDMDIALALRTIVFPTATRYDTMYSYKDVDKRREWIAHLQAGAGIVAD 300
Y+G G +S + ++ALR+ VD ++ HL AGAGIVA
Sbjct: 388 WYAGSAGYLSL-KRTEFSVALRSAR---------------VDGQQ---IHLYAGAGIVAG 428
Query: 301 SDPNDEQKECENKAAGIARAIDLAE 325
SD E +E +NK+AG+ ++
Sbjct: 429 SDAEQEWQEIDNKSAGLQSLLEHEA 453
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.6 bits (136), Expect = 5e-09
Identities = 62/344 (18%), Positives = 108/344 (31%), Gaps = 123/344 (35%)
Query: 8 VARVHDIVPPRLR---KGSIKLHTRHFGP----KLESSSMTSEAYKEAVLQAKEHILAGD 60
A++ P LR KG+ T H + + + E++ +V +A +L
Sbjct: 252 TAKLLGFTPGELRSYLKGA----TGHSQGLVTAVAIAETDSWESFFVSVRKAIT-VL--- 303
Query: 61 IFQIVL-SQRFERRTFADPFEIYRALRIVN--PSPYMTYLQARGCILVASSPEILTRVKK 117
F I + T P + +L PSP M L + ++ V K
Sbjct: 304 -FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP-M--LSISNL----TQEQVQDYVNK 355
Query: 118 --------RKI----TNRP----LAG----------TVRRGKTP-----------KEDLV 140
+++ N ++G T+R+ K P + L
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK 415
Query: 141 FEKE-----------LLNDEKQCAEHIMLVDLGRNDVGKVSKSGSVKVEKLMNIEHY--- 186
F LL A ++ DL +N+V S + + I Y
Sbjct: 416 FSNRFLPVASPFHSHLLVP----ASDLINKDLVKNNV-------SFNAKDI-QIPVYDTF 463
Query: 187 --SHVMHISSTVTGELLDHLTS----WDALRAALPVGTVSGAPKVKAMELIDELEVTRRG 240
S + +S +++ ++D + W+ + KA ++D G
Sbjct: 464 DGSDLRVLSGSISERIVDCIIRLPVKWET------------TTQFKATHILD------FG 505
Query: 241 PYSGGFGGISFTGDMDIALA----LRTIVFPT-ATRYDTMYSYK 279
P GG S G + +R IV T D Y +K
Sbjct: 506 P-----GGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFK 544
Score = 38.1 bits (88), Expect = 0.004
Identities = 50/304 (16%), Positives = 81/304 (26%), Gaps = 96/304 (31%)
Query: 41 TSEAYKEAVLQAKEHI---LAGDIFQIVLSQRFERRTFADPFEIYRALRIVNPSPYMTYL 97
TS+A ++ +A H I IV++ F + RI M +
Sbjct: 1638 TSKAAQDVWNRADNHFKDTYGFSILDIVINN---PVNLTIHFGGEKGKRIRENYSAMIF- 1693
Query: 98 QARGCILVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDLVFE--KELLNDEK--QCA 153
+ K+ + + T F K LL+ + Q A
Sbjct: 1694 ---------------ETIVDGKLKTEKIFKEINEHST---SYTFRSEKGLLSATQFTQPA 1735
Query: 154 EHIMLVDLGRNDVGKVSKSGSVKVEKLM----NIEHYSHVM-HISSTVTGELLDHLTSWD 208
+ L+ + + I + H S GE
Sbjct: 1736 --LTLM--------------EKAAFEDLKSKGLIPADATFAGH-S---LGEY-------- 1767
Query: 209 ALRAALPVGTVSGAPKVKAMELIDELEVTR-RGPYSGGFGGISFTGDMDIALALRTIVFP 267
AAL S A M + +EV RG G + +
Sbjct: 1768 ---AAL----ASLA---DVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMI------- 1810
Query: 268 TATRYDTMYSYKDVDKRREWIAHLQAGAG----IVADSDPNDEQKECENK---AAGIARA 320
A + + + + + + G IV N EN+ AAG RA
Sbjct: 1811 -AINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY---N-----VENQQYVAAGDLRA 1861
Query: 321 IDLA 324
+D
Sbjct: 1862 LDTV 1865
Score = 35.0 bits (80), Expect = 0.038
Identities = 60/431 (13%), Positives = 124/431 (28%), Gaps = 172/431 (39%)
Query: 16 PPRL----RKGSIKLHTRHFG---------PKLESSSMTSEAYKEAVLQAKEHILAGDIF 62
L +G+ +L FG +L T +++ + +
Sbjct: 142 NSALFRAVGEGNAQLVAI-FGGQGNTDDYFEELRDLYQTYHVLVGDLIKF-----SAETL 195
Query: 63 QIVLSQRFE-RRTFADPFEIYRALRIVNPSPYMTYLQARGCILVASSPEI-LTRVKKRKI 120
++ + + F I L + +P YL + I + S P I + ++ +
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS---IPI-SCPLIGVIQLAHYVV 251
Query: 121 TNRPLAGTVRRGKTPKEDLVFEKELLNDEKQ----CAEHIMLVDLGRNDVGKVSKSGSVK 176
T + L G TP E L + ++ ++ ++++ S +
Sbjct: 252 TAKLL------GFTPGE--------LRSYLKGATGHSQGLVTAVA-------IAETDSWE 290
Query: 177 -----VEKLMNI---------EHYSH------VMHISST-----------VTGELLDHLT 205
V K + + E Y + ++ S ++ + +
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ 350
Query: 206 SW-DALRAALPVGT--------------VSGAP-----------KVKAMELIDELEV--T 237
+ + + LP G VSG P K KA +D+ + +
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS 410
Query: 238 RRGP-YSGGFGGIS--F------------TGDM---DIALA---LRTIVFPTATRYDTMY 276
R +S F ++ F D+ +++ ++ V+ T D +
Sbjct: 411 ERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD-LR 469
Query: 277 SYKD------VD----KRREW-------------------------IAHLQAGAG---IV 298
VD +W + G G IV
Sbjct: 470 VLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIV 529
Query: 299 A---DSDPNDE 306
A D +P+D+
Sbjct: 530 AGTLDINPDDD 540
Score = 29.6 bits (66), Expect = 1.9
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 11/51 (21%)
Query: 85 LRIVNP-SPYMTY-----LQARGCILVASSPEILTRVKKRKITNRPLAGTV 129
+ IVN Y L+A + + +L +K +KI L ++
Sbjct: 1841 VEIVNYNVENQQYVAAGDLRA-----LDTVTNVLNFIKLQKIDIIELQKSL 1886
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 4e-06
Identities = 52/343 (15%), Positives = 97/343 (28%), Gaps = 114/343 (33%)
Query: 1 MNRL-----ENLVARVHDIVPPRLRKGSIKLHTRHFGPKLESSSMTSEAYKEAVLQAKEH 55
+ +L N +R +LR SI+ R + S+ Y+ +L
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL--------LKSKPYENCLL----- 248
Query: 56 ILAGDIFQIVLSQRFERRTFADPFEIYRALRIVNPSPYMTYLQARGC-ILVASSPEILTR 114
+L ++ + + F + C IL+ + + +T
Sbjct: 249 VLL-NV---------QNAKAWNAFNL-------------------SCKILLTTRFKQVTD 279
Query: 115 VKKRKITNRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHIMLVDLGRNDVGKVSKSGS 174
T TP E LL K
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVK----SLL-----------------------LKYLD 312
Query: 175 VKVEKLMNIEHYSHVMHISSTVTGELL-DHLTSWDALRAALPVGTVSGAPKVKAMEL-ID 232
+ + L ++ +S + E + D L +WD + V+ +E ++
Sbjct: 313 CRPQDLPREVLTTNPRRLS--IIAESIRDGLATWDNWK------HVNCDKLTTIIESSLN 364
Query: 233 ELEVTRRGP--YSGGFGGIS-FTGDMDIALALRTIVFPTATRYDTM--------YS--YK 279
LE P Y F +S F I L ++++ + D M YS K
Sbjct: 365 VLE-----PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 280 DVDKRREWIAHLQAGAGIVADSDPNDEQKECENKAAGIARAID 322
+ I + + + + EN+ A +D
Sbjct: 420 QPKESTISIPSIYL-----------ELKVKLENEYALHRSIVD 451
Score = 29.1 bits (64), Expect = 2.6
Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 12/69 (17%)
Query: 24 IKLHTRHFGPKLESSSMTSEAYKEAVLQAKEHILAG---DIFQIVLSQRFERRTFADPFE 80
+K + + A + + + +E+++ D+ +I L E
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE--------A 578
Query: 81 IYR-ALRIV 88
I+ A + V
Sbjct: 579 IFEEAHKQV 587
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A
{Campylobacter jejuni} SCOP: c.37.1.2
Length = 175
Score = 30.2 bits (69), Expect = 0.56
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 10/55 (18%)
Query: 87 IVNPSPYMTYLQARGCI--LVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDL 139
VN ++ L+ G L A + R+ K +I+ RPL + + L
Sbjct: 84 FVN----VSNLEKAGFCIYLKADFEYLKKRLDKDEISKRPLF----YDEIKAKKL 130
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 29.0 bits (64), Expect = 2.7
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 203 HLTSWDALRAALPVGTVSG 221
H T D L A P+ T+ G
Sbjct: 612 HTTGMDVLWAGTPMVTMPG 630
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A
{Coxiella burnetii}
Length = 185
Score = 27.5 bits (62), Expect = 4.4
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 96 YLQARGCI--LVASSPEILTRVKKRKITNRPL 125
+ G + L AS L R+ ++ RPL
Sbjct: 94 QISETGVVIYLTASIDTQLKRIGQKGEMRRPL 125
>2y8c_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; malaria; HET:
DUQ; 2.10A {Plasmodium falciparum} PDB: 1vyq_A*
Length = 173
Score = 27.1 bits (60), Expect = 6.0
Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 2/19 (10%)
Query: 229 ELIDELEVTRRGPYSGGFG 247
EL++EL+ T RG GGFG
Sbjct: 150 ELVEELDETSRG--EGGFG 166
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A
{Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A
3n2e_A*
Length = 168
Score = 26.7 bits (60), Expect = 6.9
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 14/67 (20%)
Query: 104 LVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDLVFEKELLNDEK----QCAEHIMLV 159
L ++ R+ +++ RPL KEL + + A I+
Sbjct: 103 LKMDFETLIKRLNQKEREKRPLL-------NNLTQA---KELFEKRQALYEKNASFIIDA 152
Query: 160 DLGRNDV 166
G N+
Sbjct: 153 RGGLNNS 159
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 7.0
Identities = 5/18 (27%), Positives = 9/18 (50%), Gaps = 8/18 (44%)
Query: 21 KGSIKLHTRHFGPKLESS 38
K ++K KL++S
Sbjct: 19 KQALK--------KLQAS 28
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat
ATP binding, chloroplast, transferase; 2.35A
{Arabidopsis thaliana}
Length = 250
Score = 27.0 bits (60), Expect = 8.2
Identities = 8/45 (17%), Positives = 13/45 (28%)
Query: 104 LVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDLVFEKELLND 148
L + R+ +RPL G T L + +
Sbjct: 148 LDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDA 192
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA
replication, DNA-BI DNA-directed DNA polymerase,
exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A
{Saccharomyces cerevisiae}
Length = 919
Score = 27.6 bits (61), Expect = 8.4
Identities = 7/47 (14%), Positives = 14/47 (29%)
Query: 129 VRRGKTPKEDLVFEKELLNDEKQCAEHIMLVDLGRNDVGKVSKSGSV 175
+ + L+ K L + H +L + + G G
Sbjct: 811 ILHNRVDISKLIISKTLAPNYTNPQPHAVLAERMKRREGVGPNVGDR 857
>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 181
Score = 26.8 bits (59), Expect = 8.7
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 5/28 (17%)
Query: 241 PYSGGFGGISFTGDMDIALALRTIVFPT 268
P + +GG S T D R + +P+
Sbjct: 5 PATNAYGGGSTT-DNPN----RFMYYPS 27
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces
lactis}
Length = 1236
Score = 27.3 bits (61), Expect = 8.7
Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Query: 241 PYSGGFGGISFTGDMDIAL 259
YS G I+FTGD + +
Sbjct: 730 VYS--LGAINFTGDEPVII 746
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.384
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,288,990
Number of extensions: 334203
Number of successful extensions: 869
Number of sequences better than 10.0: 1
Number of HSP's gapped: 828
Number of HSP's successfully gapped: 33
Length of query: 331
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 237
Effective length of database: 4,077,219
Effective search space: 966300903
Effective search space used: 966300903
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.7 bits)