Query 020101
Match_columns 331
No_of_seqs 210 out of 1933
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 07:01:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020101.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020101hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00125 Succinyl-CoA ligase [ 100.0 5.4E-70 1.2E-74 515.2 34.0 292 36-329 6-299 (300)
2 PRK05678 succinyl-CoA syntheta 100.0 7.2E-70 1.6E-74 513.5 33.6 288 37-327 3-291 (291)
3 PTZ00187 succinyl-CoA syntheta 100.0 2.3E-69 5E-74 512.6 34.6 299 26-327 16-316 (317)
4 TIGR01019 sucCoAalpha succinyl 100.0 1.5E-68 3.2E-73 503.5 32.5 283 38-323 2-285 (286)
5 TIGR02717 AcCoA-syn-alpha acet 100.0 4.9E-64 1.1E-68 501.3 27.4 272 34-324 1-288 (447)
6 COG0074 SucD Succinyl-CoA synt 100.0 2.4E-54 5.2E-59 397.2 30.9 290 36-327 2-292 (293)
7 PLN02522 ATP citrate (pro-S)-l 100.0 5.1E-53 1.1E-57 429.4 32.5 284 36-328 5-318 (608)
8 KOG1255 Succinyl-CoA synthetas 100.0 2.1E-50 4.5E-55 361.6 27.6 311 16-329 15-328 (329)
9 COG1042 Acyl-CoA synthetase (N 100.0 5.9E-51 1.3E-55 415.5 21.9 273 33-324 3-292 (598)
10 PRK06091 membrane protein FdrA 100.0 3.1E-39 6.7E-44 323.2 24.7 209 85-324 102-316 (555)
11 PF13607 Succ_CoA_lig: Succiny 100.0 9.5E-41 2E-45 283.5 11.1 132 180-322 1-137 (138)
12 PF13380 CoA_binding_2: CoA bi 99.9 2.8E-23 6.1E-28 171.6 9.7 112 44-165 2-116 (116)
13 COG1832 Predicted CoA-binding 99.8 4.1E-20 8.9E-25 154.2 6.7 124 34-166 9-135 (140)
14 KOG1254 ATP-citrate lyase [Ene 99.7 6.7E-17 1.5E-21 157.9 14.0 240 84-327 54-309 (600)
15 PF02629 CoA_binding: CoA bind 99.6 8.4E-15 1.8E-19 116.9 10.7 93 40-133 1-96 (96)
16 PF01113 DapB_N: Dihydrodipico 99.5 7.8E-14 1.7E-18 116.4 9.8 110 43-158 1-123 (124)
17 COG2344 AT-rich DNA-binding pr 99.4 4.6E-13 1E-17 117.6 7.1 105 26-133 65-180 (211)
18 TIGR00036 dapB dihydrodipicoli 99.4 2.9E-12 6.3E-17 120.4 12.6 117 43-163 2-132 (266)
19 COG0289 DapB Dihydrodipicolina 99.3 9.8E-12 2.1E-16 115.1 11.4 116 42-162 2-130 (266)
20 PLN02775 Probable dihydrodipic 99.3 2.2E-11 4.7E-16 114.7 12.0 118 42-164 11-142 (286)
21 PRK00048 dihydrodipicolinate r 99.2 7E-11 1.5E-15 110.4 12.0 112 43-159 2-117 (257)
22 PF01408 GFO_IDH_MocA: Oxidore 99.2 1.3E-10 2.8E-15 95.1 8.7 108 43-153 1-115 (120)
23 TIGR02130 dapB_plant dihydrodi 99.1 2.9E-10 6.3E-15 106.7 11.1 116 43-164 1-131 (275)
24 PF00549 Ligase_CoA: CoA-ligas 98.9 7.6E-09 1.6E-13 89.5 10.6 122 186-322 1-152 (153)
25 PRK11579 putative oxidoreducta 98.9 1.9E-08 4.1E-13 97.6 11.7 116 41-158 3-123 (346)
26 COG0673 MviM Predicted dehydro 98.8 2.4E-08 5.1E-13 95.8 10.2 117 41-158 2-126 (342)
27 PRK13303 L-aspartate dehydroge 98.7 4.7E-08 1E-12 91.9 10.1 116 43-163 2-126 (265)
28 PRK13304 L-aspartate dehydroge 98.7 7.2E-08 1.6E-12 90.6 9.9 108 43-155 2-117 (265)
29 PRK05472 redox-sensing transcr 98.7 5.6E-08 1.2E-12 88.4 7.7 114 18-132 57-179 (213)
30 PRK10206 putative oxidoreducta 98.6 1.4E-07 3E-12 91.8 10.2 111 42-154 1-118 (344)
31 PRK13302 putative L-aspartate 98.6 1.6E-07 3.4E-12 88.6 10.1 113 41-159 5-125 (271)
32 TIGR01761 thiaz-red thiazoliny 98.5 2.8E-07 6E-12 89.7 9.0 108 41-155 2-119 (343)
33 TIGR01921 DAP-DH diaminopimela 98.4 1.5E-06 3.3E-11 83.7 8.8 111 42-156 3-118 (324)
34 TIGR02717 AcCoA-syn-alpha acet 98.3 7.9E-05 1.7E-09 75.2 21.3 255 41-324 149-444 (447)
35 PLN02819 lysine-ketoglutarate 98.2 7.3E-06 1.6E-10 89.6 10.0 119 40-166 567-708 (1042)
36 TIGR03855 NAD_NadX aspartate d 98.1 1E-05 2.3E-10 74.5 7.5 95 66-163 1-102 (229)
37 PF03446 NAD_binding_2: NAD bi 98.0 1.1E-05 2.4E-10 70.1 6.7 109 43-156 2-117 (163)
38 KOG2741 Dimeric dihydrodiol de 98.0 3.2E-05 6.9E-10 74.5 10.3 124 40-166 4-137 (351)
39 PRK06349 homoserine dehydrogen 98.0 2.7E-05 5.9E-10 78.0 9.1 112 41-155 2-127 (426)
40 PRK06270 homoserine dehydrogen 98.0 3E-05 6.4E-10 75.5 8.9 175 42-226 2-223 (341)
41 TIGR00465 ilvC ketol-acid redu 97.9 3.6E-05 7.8E-10 74.2 8.9 114 42-162 3-121 (314)
42 PRK07634 pyrroline-5-carboxyla 97.9 8.2E-05 1.8E-09 68.3 10.8 113 41-159 3-124 (245)
43 TIGR03215 ac_ald_DH_ac acetald 97.9 3.6E-05 7.9E-10 73.1 8.6 88 43-132 2-96 (285)
44 PRK00436 argC N-acetyl-gamma-g 97.9 4.6E-05 1E-09 74.3 9.2 93 42-136 2-104 (343)
45 PRK04207 glyceraldehyde-3-phos 97.9 3.1E-05 6.8E-10 75.4 7.5 86 43-133 2-110 (341)
46 PRK08300 acetaldehyde dehydrog 97.9 5.4E-05 1.2E-09 72.4 8.8 90 41-132 3-102 (302)
47 PF10727 Rossmann-like: Rossma 97.9 3.8E-05 8.3E-10 64.5 6.6 95 40-138 8-110 (127)
48 PRK05479 ketol-acid reductoiso 97.9 6.5E-05 1.4E-09 72.8 9.0 115 42-163 17-136 (330)
49 PRK13301 putative L-aspartate 97.8 0.00019 4.2E-09 67.3 10.4 110 42-155 2-118 (267)
50 COG1712 Predicted dinucleotide 97.7 0.00025 5.5E-09 64.7 10.2 107 44-155 2-116 (255)
51 COG0059 IlvC Ketol-acid reduct 97.7 0.00012 2.5E-09 69.6 8.2 123 32-164 11-138 (338)
52 PRK09599 6-phosphogluconate de 97.7 0.00019 4E-09 68.5 9.8 115 44-162 2-124 (301)
53 PRK12490 6-phosphogluconate de 97.7 0.00016 3.4E-09 69.0 9.1 110 44-156 2-117 (299)
54 TIGR00872 gnd_rel 6-phosphoglu 97.7 0.00029 6.3E-09 67.2 10.4 113 44-160 2-120 (298)
55 PRK11559 garR tartronate semia 97.6 0.00039 8.4E-09 65.9 10.5 109 43-156 3-119 (296)
56 PF01118 Semialdhyde_dh: Semia 97.6 0.00015 3.2E-09 59.9 6.6 88 44-135 1-101 (121)
57 PF07991 IlvN: Acetohydroxy ac 97.6 0.00018 4E-09 62.6 7.0 117 41-164 3-124 (165)
58 PF03807 F420_oxidored: NADP o 97.6 0.0002 4.3E-09 56.2 6.5 73 44-119 1-81 (96)
59 PRK14618 NAD(P)H-dependent gly 97.6 0.00022 4.8E-09 68.7 8.2 111 42-159 4-137 (328)
60 COG1748 LYS9 Saccharopine dehy 97.6 0.00045 9.7E-09 68.3 10.3 108 43-159 2-123 (389)
61 PRK08374 homoserine dehydrogen 97.6 0.00045 9.6E-09 67.2 10.0 121 42-165 2-155 (336)
62 PRK11880 pyrroline-5-carboxyla 97.5 0.00039 8.5E-09 64.8 9.1 94 43-140 3-103 (267)
63 PLN02256 arogenate dehydrogena 97.5 0.00052 1.1E-08 65.9 10.1 103 10-119 7-112 (304)
64 TIGR01505 tartro_sem_red 2-hyd 97.5 0.00056 1.2E-08 64.7 10.1 109 44-157 1-117 (291)
65 PRK07679 pyrroline-5-carboxyla 97.5 0.00082 1.8E-08 63.4 11.1 96 42-141 3-109 (279)
66 PRK06091 membrane protein FdrA 97.5 0.039 8.4E-07 56.8 23.5 250 43-325 194-494 (555)
67 PF03447 NAD_binding_3: Homose 97.5 5.8E-05 1.3E-09 61.8 2.7 104 49-155 1-115 (117)
68 PF01210 NAD_Gly3P_dh_N: NAD-d 97.5 0.00064 1.4E-08 58.7 9.2 110 44-158 1-134 (157)
69 PRK07680 late competence prote 97.5 0.00054 1.2E-08 64.3 9.2 107 44-158 2-118 (273)
70 PRK00094 gpsA NAD(P)H-dependen 97.5 0.00041 8.9E-09 66.2 8.3 92 43-138 2-112 (325)
71 TIGR01016 sucCoAbeta succinyl- 97.4 0.002 4.3E-08 63.7 12.9 122 179-321 255-382 (386)
72 PTZ00431 pyrroline carboxylate 97.4 0.0012 2.6E-08 61.7 10.7 95 42-142 3-101 (260)
73 PRK06928 pyrroline-5-carboxyla 97.4 0.0014 3E-08 61.9 10.7 93 44-141 3-108 (277)
74 TIGR01692 HIBADH 3-hydroxyisob 97.4 0.00094 2E-08 63.2 9.4 105 47-156 1-113 (288)
75 PRK00696 sucC succinyl-CoA syn 97.4 0.0032 6.9E-08 62.3 13.4 122 180-322 256-383 (388)
76 PRK13403 ketol-acid reductoiso 97.4 0.00056 1.2E-08 66.0 7.7 116 42-164 16-135 (335)
77 PLN02688 pyrroline-5-carboxyla 97.4 0.001 2.2E-08 61.9 9.3 93 44-140 2-104 (266)
78 PRK12491 pyrroline-5-carboxyla 97.3 0.0013 2.8E-08 62.1 9.6 110 43-159 3-122 (272)
79 PRK15461 NADH-dependent gamma- 97.3 0.0015 3.2E-08 62.2 9.9 109 44-158 3-121 (296)
80 COG0240 GpsA Glycerol-3-phosph 97.3 0.002 4.3E-08 62.2 10.4 113 43-159 2-137 (329)
81 PLN02712 arogenate dehydrogena 97.3 0.0019 4.1E-08 68.4 11.0 80 39-121 366-447 (667)
82 TIGR01850 argC N-acetyl-gamma- 97.3 0.00092 2E-08 65.3 8.0 90 43-135 1-103 (346)
83 PRK06476 pyrroline-5-carboxyla 97.2 0.0016 3.5E-08 60.6 9.1 109 44-158 2-117 (258)
84 PRK15059 tartronate semialdehy 97.2 0.0015 3.2E-08 62.3 8.9 107 44-156 2-116 (292)
85 COG2084 MmsB 3-hydroxyisobutyr 97.2 0.0036 7.9E-08 59.5 10.9 117 44-165 2-128 (286)
86 PRK08655 prephenate dehydrogen 97.1 0.0037 7.9E-08 63.0 10.9 109 44-157 2-115 (437)
87 PTZ00345 glycerol-3-phosphate 97.1 0.0026 5.7E-08 62.6 9.2 96 39-137 8-135 (365)
88 PRK14619 NAD(P)H-dependent gly 97.1 0.0035 7.5E-08 60.0 9.8 82 43-138 5-89 (308)
89 PLN02712 arogenate dehydrogena 97.1 0.0034 7.4E-08 66.5 10.6 77 41-120 51-129 (667)
90 PRK11199 tyrA bifunctional cho 97.1 0.0053 1.1E-07 60.6 11.3 81 39-133 95-175 (374)
91 PF13460 NAD_binding_10: NADH( 97.1 0.0013 2.8E-08 57.1 6.3 86 45-132 1-98 (183)
92 PLN02350 phosphogluconate dehy 97.0 0.0033 7.1E-08 64.2 9.8 115 43-161 7-135 (493)
93 PRK07502 cyclohexadienyl dehyd 97.0 0.004 8.6E-08 59.5 9.9 111 42-158 6-124 (307)
94 COG1086 Predicted nucleoside-d 97.0 0.029 6.3E-07 57.7 15.7 209 40-271 114-332 (588)
95 PRK14046 malate--CoA ligase su 96.9 0.017 3.7E-07 57.5 13.4 124 179-324 255-382 (392)
96 TIGR00873 gnd 6-phosphoglucona 96.9 0.0054 1.2E-07 62.3 10.0 113 45-161 2-126 (467)
97 PRK05671 aspartate-semialdehyd 96.9 0.0031 6.7E-08 61.4 7.9 92 40-135 2-101 (336)
98 PRK06728 aspartate-semialdehyd 96.9 0.0078 1.7E-07 58.8 10.6 113 40-161 3-134 (347)
99 TIGR03376 glycerol3P_DH glycer 96.9 0.0056 1.2E-07 59.8 9.5 91 44-137 1-122 (342)
100 PRK12439 NAD(P)H-dependent gly 96.9 0.0073 1.6E-07 58.7 10.2 94 41-137 6-117 (341)
101 COG0136 Asd Aspartate-semialde 96.9 0.0086 1.9E-07 58.0 10.3 116 43-161 2-135 (334)
102 PTZ00142 6-phosphogluconate de 96.8 0.0076 1.6E-07 61.3 10.5 114 44-161 3-129 (470)
103 TIGR01546 GAPDH-II_archae glyc 96.8 0.0027 5.8E-08 61.7 6.9 85 45-132 1-108 (333)
104 TIGR03570 NeuD_NnaD sugar O-ac 96.8 0.0076 1.6E-07 52.9 9.2 83 44-127 1-87 (201)
105 PLN02968 Probable N-acetyl-gam 96.8 0.0065 1.4E-07 60.2 9.5 91 40-134 36-137 (381)
106 COG0345 ProC Pyrroline-5-carbo 96.8 0.0073 1.6E-07 56.9 9.2 112 43-163 2-123 (266)
107 TIGR01915 npdG NADPH-dependent 96.8 0.0051 1.1E-07 56.0 7.7 90 44-136 2-106 (219)
108 PRK06598 aspartate-semialdehyd 96.8 0.0072 1.6E-07 59.5 9.2 113 43-161 2-137 (369)
109 PRK11863 N-acetyl-gamma-glutam 96.8 0.0067 1.5E-07 58.5 8.8 82 42-134 2-84 (313)
110 PRK07417 arogenate dehydrogena 96.7 0.0058 1.3E-07 57.6 8.1 91 44-138 2-97 (279)
111 PRK08664 aspartate-semialdehyd 96.7 0.0061 1.3E-07 59.6 8.5 89 42-134 3-110 (349)
112 PRK14620 NAD(P)H-dependent gly 96.7 0.0097 2.1E-07 57.2 9.8 90 44-136 2-111 (326)
113 PRK08818 prephenate dehydrogen 96.7 0.016 3.5E-07 57.2 11.3 70 42-122 4-74 (370)
114 PF05368 NmrA: NmrA-like famil 96.7 0.0036 7.8E-08 56.8 6.3 84 45-132 1-102 (233)
115 PLN02383 aspartate semialdehyd 96.7 0.017 3.8E-07 56.4 11.4 92 40-134 5-103 (344)
116 PRK06444 prephenate dehydrogen 96.7 0.0042 9E-08 56.0 6.3 51 44-120 2-52 (197)
117 PRK06545 prephenate dehydrogen 96.7 0.011 2.5E-07 57.8 9.9 107 44-157 2-118 (359)
118 PF03435 Saccharop_dh: Sacchar 96.7 0.0026 5.7E-08 62.5 5.5 104 45-155 1-119 (386)
119 smart00846 Gp_dh_N Glyceraldeh 96.7 0.0083 1.8E-07 51.7 7.8 86 43-129 1-117 (149)
120 PRK06436 glycerate dehydrogena 96.7 0.018 3.9E-07 55.3 11.0 64 41-111 121-185 (303)
121 PRK08507 prephenate dehydrogen 96.6 0.0094 2E-07 56.0 8.8 89 44-138 2-96 (275)
122 PLN02545 3-hydroxybutyryl-CoA 96.6 0.0041 8.8E-08 59.0 6.3 94 42-140 4-128 (295)
123 PRK06392 homoserine dehydrogen 96.6 0.0097 2.1E-07 57.7 8.8 109 43-155 1-139 (326)
124 PRK14874 aspartate-semialdehyd 96.6 0.0081 1.8E-07 58.3 8.3 89 43-134 2-97 (334)
125 PRK14806 bifunctional cyclohex 96.6 0.015 3.2E-07 62.2 10.9 110 41-155 2-119 (735)
126 PRK08605 D-lactate dehydrogena 96.6 0.011 2.3E-07 57.5 8.8 105 41-152 145-255 (332)
127 TIGR02853 spore_dpaA dipicolin 96.5 0.0081 1.8E-07 57.2 7.8 116 41-166 150-271 (287)
128 PRK08040 putative semialdehyde 96.5 0.0096 2.1E-07 58.0 8.2 93 40-135 2-101 (336)
129 PLN02858 fructose-bisphosphate 96.5 0.013 2.7E-07 66.9 10.3 114 43-161 325-449 (1378)
130 PRK00257 erythronate-4-phospha 96.5 0.013 2.9E-07 58.0 9.0 63 41-109 115-177 (381)
131 PRK05225 ketol-acid reductoiso 96.5 0.0045 9.7E-08 62.3 5.6 116 41-164 35-160 (487)
132 TIGR03026 NDP-sugDHase nucleot 96.4 0.015 3.3E-07 57.9 9.3 95 44-142 2-130 (411)
133 PRK15469 ghrA bifunctional gly 96.4 0.026 5.7E-07 54.4 10.6 65 41-111 135-202 (312)
134 COG0002 ArgC Acetylglutamate s 96.4 0.015 3.3E-07 56.4 8.8 92 42-135 2-105 (349)
135 TIGR03025 EPS_sugtrans exopoly 96.4 0.014 3.1E-07 58.6 8.7 86 43-129 126-221 (445)
136 TIGR03649 ergot_EASG ergot alk 96.4 0.016 3.5E-07 54.0 8.6 89 44-132 1-105 (285)
137 TIGR00978 asd_EA aspartate-sem 96.4 0.012 2.6E-07 57.3 7.8 89 43-134 1-107 (341)
138 PRK07574 formate dehydrogenase 96.4 0.031 6.6E-07 55.5 10.7 107 41-153 191-304 (385)
139 TIGR01532 E4PD_g-proteo D-eryt 96.3 0.011 2.4E-07 57.3 7.4 86 44-130 1-120 (325)
140 PRK12480 D-lactate dehydrogena 96.3 0.027 5.8E-07 54.7 10.0 66 41-111 145-210 (330)
141 TIGR01745 asd_gamma aspartate- 96.3 0.017 3.7E-07 56.8 8.5 116 44-162 2-137 (366)
142 PLN03139 formate dehydrogenase 96.3 0.035 7.6E-07 55.1 10.7 107 41-153 198-311 (386)
143 PRK15438 erythronate-4-phospha 96.3 0.02 4.3E-07 56.7 9.0 63 41-109 115-177 (378)
144 TIGR03023 WcaJ_sugtrans Undeca 96.2 0.022 4.9E-07 57.3 9.2 85 43-129 129-224 (451)
145 TIGR01851 argC_other N-acetyl- 96.2 0.024 5.2E-07 54.5 8.7 81 43-134 2-83 (310)
146 COG0287 TyrA Prephenate dehydr 96.2 0.042 9E-07 52.2 10.1 84 42-128 3-94 (279)
147 PLN00124 succinyl-CoA ligase [ 96.1 0.083 1.8E-06 53.1 12.5 125 179-325 290-418 (422)
148 PRK06130 3-hydroxybutyryl-CoA 96.1 0.021 4.6E-07 54.4 8.1 93 41-137 3-121 (311)
149 PLN02858 fructose-bisphosphate 96.1 0.031 6.7E-07 63.8 10.4 110 41-155 3-122 (1378)
150 PRK09260 3-hydroxybutyryl-CoA 96.1 0.0086 1.9E-07 56.6 5.2 92 44-139 3-125 (288)
151 PRK06522 2-dehydropantoate 2-r 96.1 0.029 6.3E-07 52.8 8.6 89 44-137 2-106 (304)
152 PRK08410 2-hydroxyacid dehydro 96.0 0.033 7.1E-07 53.6 9.0 105 41-153 144-252 (311)
153 PRK15204 undecaprenyl-phosphat 96.0 0.036 7.7E-07 56.5 9.6 86 43-130 147-241 (476)
154 cd01065 NAD_bind_Shikimate_DH 96.0 0.0079 1.7E-07 51.0 4.1 107 41-156 18-137 (155)
155 PRK13243 glyoxylate reductase; 96.0 0.049 1.1E-06 52.9 9.9 105 41-152 149-259 (333)
156 PF02826 2-Hacid_dh_C: D-isome 95.9 0.0076 1.7E-07 53.1 3.8 64 41-109 35-101 (178)
157 TIGR03022 WbaP_sugtrans Undeca 95.9 0.039 8.5E-07 55.6 9.2 82 43-126 126-218 (456)
158 TIGR01296 asd_B aspartate-semi 95.9 0.018 4E-07 56.1 6.6 85 44-132 1-93 (339)
159 PRK05808 3-hydroxybutyryl-CoA 95.8 0.026 5.6E-07 53.2 7.2 91 43-138 4-125 (282)
160 PRK06932 glycerate dehydrogena 95.8 0.044 9.6E-07 52.8 8.8 62 41-109 146-207 (314)
161 PRK10124 putative UDP-glucose 95.8 0.042 9.2E-07 55.8 9.0 84 43-129 144-236 (463)
162 COG1023 Gnd Predicted 6-phosph 95.8 0.054 1.2E-06 50.3 8.7 119 44-164 2-125 (300)
163 TIGR01327 PGDH D-3-phosphoglyc 95.8 0.037 8.1E-07 57.1 8.6 107 41-153 137-249 (525)
164 CHL00194 ycf39 Ycf39; Provisio 95.8 0.027 5.8E-07 53.7 7.1 87 44-132 2-110 (317)
165 PRK11064 wecC UDP-N-acetyl-D-m 95.8 0.068 1.5E-06 53.5 10.2 100 43-144 4-131 (415)
166 COG0111 SerA Phosphoglycerate 95.7 0.019 4.2E-07 55.6 5.8 70 42-116 142-215 (324)
167 COG4569 MhpF Acetaldehyde dehy 95.7 0.038 8.3E-07 50.0 7.1 91 40-132 2-103 (310)
168 PLN00141 Tic62-NAD(P)-related 95.7 0.096 2.1E-06 48.0 10.1 34 40-73 15-48 (251)
169 COG2910 Putative NADH-flavin r 95.6 0.056 1.2E-06 48.3 7.8 64 43-109 1-72 (211)
170 PRK12921 2-dehydropantoate 2-r 95.6 0.081 1.7E-06 50.0 9.4 89 44-136 2-107 (305)
171 PRK11790 D-3-phosphoglycerate 95.6 0.094 2E-06 52.5 10.3 65 41-110 150-214 (409)
172 PRK07531 bifunctional 3-hydrox 95.5 0.063 1.4E-06 54.9 8.8 110 43-159 5-141 (495)
173 KOG0409 Predicted dehydrogenas 95.4 0.2 4.4E-06 47.9 11.0 185 39-232 32-243 (327)
174 PLN02928 oxidoreductase family 95.3 0.08 1.7E-06 51.8 8.7 64 41-109 158-236 (347)
175 PLN00016 RNA-binding protein; 95.3 0.085 1.8E-06 51.6 8.9 92 41-132 51-165 (378)
176 cd01075 NAD_bind_Leu_Phe_Val_D 95.3 0.07 1.5E-06 48.0 7.6 114 41-165 27-149 (200)
177 PRK06129 3-hydroxyacyl-CoA deh 95.3 0.054 1.2E-06 51.8 7.3 75 43-121 3-106 (308)
178 PLN02657 3,8-divinyl protochlo 95.2 0.091 2E-06 52.0 8.9 93 40-132 58-182 (390)
179 PRK08293 3-hydroxybutyryl-CoA 95.2 0.087 1.9E-06 49.8 8.4 75 43-121 4-108 (287)
180 KOG2380 Prephenate dehydrogena 95.2 0.047 1E-06 53.0 6.4 118 40-159 50-174 (480)
181 COG0045 SucC Succinyl-CoA synt 95.1 0.7 1.5E-05 45.6 14.3 122 180-322 255-382 (387)
182 PRK08306 dipicolinate synthase 95.1 0.068 1.5E-06 51.1 7.2 107 42-158 152-263 (296)
183 PRK06487 glycerate dehydrogena 95.0 0.13 2.8E-06 49.6 8.9 61 41-109 147-207 (317)
184 PF04321 RmlD_sub_bind: RmlD s 95.0 0.036 7.8E-07 52.4 5.0 83 43-132 1-101 (286)
185 PRK07530 3-hydroxybutyryl-CoA 94.9 0.054 1.2E-06 51.2 5.9 91 42-137 4-125 (292)
186 TIGR03013 EpsB_2 sugar transfe 94.9 0.095 2.1E-06 52.8 7.9 85 43-128 125-218 (442)
187 PF13727 CoA_binding_3: CoA-bi 94.8 0.067 1.5E-06 45.6 5.9 85 43-128 78-173 (175)
188 PRK06035 3-hydroxyacyl-CoA deh 94.8 0.097 2.1E-06 49.5 7.4 90 43-139 4-129 (291)
189 COG1052 LdhA Lactate dehydroge 94.8 0.3 6.5E-06 47.4 10.9 107 40-153 144-256 (324)
190 PRK15181 Vi polysaccharide bio 94.7 0.16 3.5E-06 49.0 9.0 36 37-72 10-45 (348)
191 PRK13581 D-3-phosphoglycerate 94.7 0.11 2.4E-06 53.6 8.2 65 41-110 139-205 (526)
192 PRK06719 precorrin-2 dehydroge 94.7 0.062 1.3E-06 46.6 5.3 37 39-77 10-46 (157)
193 PLN02695 GDP-D-mannose-3',5'-e 94.6 0.2 4.4E-06 49.0 9.4 92 38-132 17-137 (370)
194 PRK08955 glyceraldehyde-3-phos 94.6 0.12 2.6E-06 50.4 7.6 88 43-132 3-121 (334)
195 smart00859 Semialdhyde_dh Semi 94.6 0.095 2E-06 42.9 6.0 74 44-118 1-84 (122)
196 cd05211 NAD_bind_Glu_Leu_Phe_V 94.5 0.2 4.3E-06 45.8 8.4 111 40-159 21-150 (217)
197 PRK06813 homoserine dehydrogen 94.4 0.25 5.5E-06 48.3 9.5 109 42-155 2-145 (346)
198 COG4693 PchG Oxidoreductase (N 94.4 0.1 2.2E-06 49.5 6.3 103 44-154 6-119 (361)
199 PRK06249 2-dehydropantoate 2-r 94.4 0.25 5.4E-06 47.3 9.3 93 41-138 4-113 (313)
200 PLN02358 glyceraldehyde-3-phos 94.4 0.12 2.6E-06 50.5 7.0 88 41-129 4-125 (338)
201 PRK08229 2-dehydropantoate 2-r 94.4 0.15 3.3E-06 49.0 7.8 90 43-137 3-113 (341)
202 PRK15057 UDP-glucose 6-dehydro 94.3 0.2 4.4E-06 49.7 8.8 103 44-152 2-136 (388)
203 PRK09287 6-phosphogluconate de 94.3 0.27 5.8E-06 50.0 9.6 105 54-161 1-117 (459)
204 COG0057 GapA Glyceraldehyde-3- 94.3 0.11 2.3E-06 50.3 6.3 90 43-133 2-124 (335)
205 PRK15409 bifunctional glyoxyla 94.2 0.32 7E-06 47.1 9.7 65 41-110 144-211 (323)
206 PRK05447 1-deoxy-D-xylulose 5- 94.2 0.26 5.5E-06 48.9 9.0 110 43-155 2-145 (385)
207 COG4091 Predicted homoserine d 94.2 0.61 1.3E-05 45.7 11.2 124 40-166 15-191 (438)
208 PRK05865 hypothetical protein; 94.2 1 2.2E-05 49.3 14.2 88 44-134 2-105 (854)
209 PRK08223 hypothetical protein; 94.2 0.23 4.9E-06 47.4 8.3 118 41-161 26-154 (287)
210 COG1810 Uncharacterized protei 94.1 1.1 2.5E-05 40.9 12.3 115 43-166 2-121 (224)
211 PF02558 ApbA: Ketopantoate re 94.1 0.12 2.6E-06 43.5 5.8 91 45-138 1-108 (151)
212 PF00044 Gp_dh_N: Glyceraldehy 94.1 0.06 1.3E-06 46.5 3.9 88 43-131 1-120 (151)
213 COG2085 Predicted dinucleotide 94.1 0.34 7.5E-06 44.1 8.9 80 43-126 2-88 (211)
214 PRK13535 erythrose 4-phosphate 94.1 0.16 3.6E-06 49.4 7.3 89 43-134 2-125 (336)
215 PLN02235 ATP citrate (pro-S)-l 94.0 0.43 9.4E-06 47.8 10.3 127 179-322 268-414 (423)
216 PF00899 ThiF: ThiF family; I 94.0 0.12 2.6E-06 43.1 5.6 113 41-158 1-124 (135)
217 TIGR00936 ahcY adenosylhomocys 94.0 0.2 4.4E-06 50.0 7.9 100 41-146 194-297 (406)
218 TIGR01181 dTDP_gluc_dehyt dTDP 93.9 1.3 2.9E-05 41.1 12.9 30 44-74 1-32 (317)
219 COG0565 LasT rRNA methylase [T 93.8 0.55 1.2E-05 43.6 9.9 64 41-107 3-80 (242)
220 PLN03209 translocon at the inn 93.8 0.23 4.9E-06 51.8 8.2 88 42-132 80-208 (576)
221 PRK15182 Vi polysaccharide bio 93.8 0.35 7.5E-06 48.7 9.3 68 38-110 2-87 (425)
222 cd07018 S49_SppA_67K_type Sign 93.8 0.25 5.4E-06 45.1 7.6 87 222-309 33-133 (222)
223 COG0460 ThrA Homoserine dehydr 93.6 0.57 1.2E-05 45.6 10.1 109 41-155 2-136 (333)
224 cd01491 Ube1_repeat1 Ubiquitin 93.6 0.29 6.4E-06 46.7 7.9 115 41-164 18-143 (286)
225 COG0569 TrkA K+ transport syst 93.5 0.23 5.1E-06 45.5 6.9 85 43-130 1-99 (225)
226 cd01492 Aos1_SUMO Ubiquitin ac 93.5 0.47 1E-05 42.6 8.7 117 42-164 21-148 (197)
227 PRK06718 precorrin-2 dehydroge 93.5 0.24 5.3E-06 44.7 6.9 37 39-77 7-43 (202)
228 TIGR00715 precor6x_red precorr 93.5 0.3 6.4E-06 45.9 7.7 84 44-129 2-98 (256)
229 cd05213 NAD_bind_Glutamyl_tRNA 93.4 0.14 3.1E-06 49.2 5.6 79 41-122 177-261 (311)
230 PRK07066 3-hydroxybutyryl-CoA 93.4 0.18 4E-06 48.8 6.4 66 43-112 8-96 (321)
231 PLN02214 cinnamoyl-CoA reducta 93.4 0.53 1.1E-05 45.5 9.6 90 41-132 9-127 (342)
232 COG1171 IlvA Threonine dehydra 93.3 7.2 0.00016 38.3 17.1 210 87-328 60-279 (347)
233 KOG2711 Glycerol-3-phosphate d 93.1 0.15 3.3E-06 49.5 5.1 186 40-229 19-261 (372)
234 TIGR01214 rmlD dTDP-4-dehydror 93.1 0.37 8E-06 44.6 7.7 82 44-132 1-100 (287)
235 PRK12475 thiamine/molybdopteri 93.1 0.51 1.1E-05 46.1 8.9 116 41-161 23-151 (338)
236 PF02593 dTMP_synthase: Thymid 93.0 0.68 1.5E-05 42.4 9.0 109 51-165 5-117 (217)
237 PRK09466 metL bifunctional asp 93.0 0.66 1.4E-05 50.5 10.3 119 39-161 455-604 (810)
238 PRK09414 glutamate dehydrogena 92.9 0.62 1.3E-05 47.2 9.4 112 40-158 230-366 (445)
239 cd00394 Clp_protease_like Case 92.9 0.26 5.5E-06 42.3 5.9 53 223-275 16-69 (161)
240 cd01483 E1_enzyme_family Super 92.9 0.33 7.1E-06 40.8 6.4 114 44-162 1-125 (143)
241 PLN02240 UDP-glucose 4-epimera 92.9 0.68 1.5E-05 44.2 9.4 91 42-132 5-132 (352)
242 cd05313 NAD_bind_2_Glu_DH NAD( 92.8 0.36 7.9E-06 45.3 7.1 112 40-158 36-176 (254)
243 PRK10675 UDP-galactose-4-epime 92.7 0.73 1.6E-05 43.8 9.3 29 44-72 2-30 (338)
244 TIGR03466 HpnA hopanoid-associ 92.7 0.76 1.6E-05 43.1 9.4 86 44-132 2-113 (328)
245 PLN02725 GDP-4-keto-6-deoxyman 92.7 0.51 1.1E-05 44.0 8.1 81 47-132 2-101 (306)
246 cd01485 E1-1_like Ubiquitin ac 92.6 0.7 1.5E-05 41.5 8.5 119 41-164 18-151 (198)
247 TIGR01777 yfcH conserved hypot 92.6 0.49 1.1E-05 43.6 7.8 85 45-132 1-111 (292)
248 TIGR01470 cysG_Nterm siroheme 92.6 0.36 7.7E-06 43.7 6.6 35 41-77 8-42 (205)
249 TIGR02356 adenyl_thiF thiazole 92.6 0.48 1E-05 42.6 7.4 116 41-161 20-146 (202)
250 KOG0069 Glyoxylate/hydroxypyru 92.6 0.93 2E-05 44.2 9.8 105 39-151 159-271 (336)
251 PF01488 Shikimate_DH: Shikima 92.3 0.11 2.3E-06 43.7 2.7 81 40-124 10-99 (135)
252 TIGR01179 galE UDP-glucose-4-e 92.3 0.83 1.8E-05 42.6 9.1 88 44-132 1-121 (328)
253 PRK08268 3-hydroxy-acyl-CoA de 92.3 0.27 5.8E-06 50.6 6.1 69 41-114 6-101 (507)
254 TIGR02355 moeB molybdopterin s 92.3 0.83 1.8E-05 42.3 8.9 115 41-160 23-148 (240)
255 PF00289 CPSase_L_chain: Carba 92.3 0.32 6.9E-06 39.7 5.4 97 43-158 3-106 (110)
256 PRK08328 hypothetical protein; 92.2 0.74 1.6E-05 42.4 8.3 118 41-163 26-155 (231)
257 PF13241 NAD_binding_7: Putati 92.2 0.14 3.1E-06 40.9 3.2 81 39-126 4-88 (103)
258 cd00401 AdoHcyase S-adenosyl-L 92.2 0.27 5.9E-06 49.2 5.8 78 42-124 202-283 (413)
259 PF03721 UDPG_MGDP_dh_N: UDP-g 92.1 0.51 1.1E-05 42.0 6.9 87 43-135 1-123 (185)
260 PLN03096 glyceraldehyde-3-phos 92.0 0.49 1.1E-05 47.1 7.2 88 43-132 61-183 (395)
261 TIGR02279 PaaC-3OHAcCoADH 3-hy 91.9 0.35 7.5E-06 49.8 6.4 65 43-112 6-97 (503)
262 cd00755 YgdL_like Family of ac 91.9 0.74 1.6E-05 42.5 8.0 155 42-213 11-181 (231)
263 PRK08618 ornithine cyclodeamin 91.9 0.22 4.7E-06 48.1 4.6 88 39-131 124-222 (325)
264 PLN02583 cinnamoyl-CoA reducta 91.9 1.2 2.7E-05 41.9 9.7 32 42-73 6-37 (297)
265 PRK09987 dTDP-4-dehydrorhamnos 91.9 0.54 1.2E-05 44.4 7.2 84 44-132 2-104 (299)
266 PRK12320 hypothetical protein; 91.8 0.72 1.6E-05 49.3 8.8 86 44-133 2-103 (699)
267 cd00757 ThiF_MoeB_HesA_family 91.8 0.91 2E-05 41.5 8.4 114 41-159 20-144 (228)
268 PF02670 DXP_reductoisom: 1-de 91.8 0.41 8.9E-06 40.3 5.6 28 45-72 1-30 (129)
269 cd07022 S49_Sppa_36K_type Sign 91.7 0.44 9.6E-06 43.2 6.2 55 221-275 28-85 (214)
270 PRK12557 H(2)-dependent methyl 91.7 1.1 2.5E-05 43.7 9.4 88 55-145 32-130 (342)
271 PRK15116 sulfur acceptor prote 91.6 1.2 2.6E-05 42.1 9.1 111 41-155 29-150 (268)
272 TIGR02622 CDP_4_6_dhtase CDP-g 91.5 1.3 2.9E-05 42.5 9.7 31 41-71 3-33 (349)
273 PRK06179 short chain dehydroge 91.5 2.5 5.5E-05 38.7 11.1 30 42-71 4-33 (270)
274 cd07023 S49_Sppa_N_C Signal pe 91.4 0.6 1.3E-05 42.0 6.7 54 222-275 21-78 (208)
275 PTZ00117 malate dehydrogenase; 91.4 1.8 4E-05 41.7 10.4 87 41-132 4-122 (319)
276 PRK14851 hypothetical protein; 91.4 0.94 2E-05 48.3 9.0 112 41-155 42-164 (679)
277 KOG1502 Flavonol reductase/cin 91.3 1.1 2.3E-05 43.6 8.6 89 41-132 5-128 (327)
278 PRK07688 thiamine/molybdopteri 91.3 0.83 1.8E-05 44.6 7.9 115 41-160 23-150 (339)
279 PRK00683 murD UDP-N-acetylmura 91.2 0.46 1E-05 47.3 6.3 78 43-126 4-86 (418)
280 cd07014 S49_SppA Signal peptid 91.2 0.65 1.4E-05 40.7 6.5 55 222-276 26-84 (177)
281 cd07019 S49_SppA_1 Signal pept 91.2 0.54 1.2E-05 42.5 6.2 54 222-275 25-82 (211)
282 PTZ00023 glyceraldehyde-3-phos 91.1 0.75 1.6E-05 44.9 7.4 88 43-132 3-122 (337)
283 PLN02306 hydroxypyruvate reduc 90.9 0.45 9.8E-06 47.3 5.8 65 41-109 164-246 (386)
284 PRK07819 3-hydroxybutyryl-CoA 90.9 0.58 1.3E-05 44.4 6.3 67 42-113 5-98 (286)
285 cd01493 APPBP1_RUB Ubiquitin a 90.8 0.81 1.8E-05 46.1 7.6 118 42-164 20-150 (425)
286 COG1091 RfbD dTDP-4-dehydrorha 90.8 0.74 1.6E-05 43.8 6.9 78 44-128 2-97 (281)
287 PRK14030 glutamate dehydrogena 90.8 1.2 2.5E-05 45.2 8.6 112 40-158 226-366 (445)
288 PRK05690 molybdopterin biosynt 90.7 1.2 2.7E-05 41.3 8.3 115 41-160 31-156 (245)
289 PRK09436 thrA bifunctional asp 90.7 1.2 2.6E-05 48.5 9.3 117 34-155 455-604 (819)
290 cd01080 NAD_bind_m-THF_DH_Cycl 90.6 0.52 1.1E-05 41.4 5.3 56 41-111 43-99 (168)
291 PRK05476 S-adenosyl-L-homocyst 90.6 1.1 2.5E-05 45.0 8.4 117 41-166 211-331 (425)
292 PRK14106 murD UDP-N-acetylmura 90.5 0.53 1.2E-05 47.1 6.0 81 41-125 4-94 (450)
293 cd01391 Periplasmic_Binding_Pr 90.3 12 0.00025 32.7 14.8 88 180-275 124-220 (269)
294 PLN02896 cinnamyl-alcohol dehy 90.2 1.6 3.4E-05 42.1 8.8 34 40-73 8-41 (353)
295 COG3804 Uncharacterized conser 90.1 2 4.4E-05 40.9 9.0 108 42-156 2-129 (350)
296 TIGR00706 SppA_dom signal pept 90.1 0.84 1.8E-05 41.1 6.4 86 223-308 18-116 (207)
297 PLN02696 1-deoxy-D-xylulose-5- 90.0 3.6 7.7E-05 41.7 11.3 111 42-155 57-203 (454)
298 PLN02662 cinnamyl-alcohol dehy 90.0 2.2 4.8E-05 40.1 9.5 32 42-73 4-35 (322)
299 PLN02166 dTDP-glucose 4,6-dehy 90.0 1.1 2.4E-05 45.1 7.8 41 34-74 112-152 (436)
300 PRK05597 molybdopterin biosynt 89.9 1.4 3E-05 43.2 8.2 116 41-161 27-153 (355)
301 PRK14852 hypothetical protein; 89.9 1.3 2.9E-05 48.8 8.7 118 41-161 331-459 (989)
302 PF01073 3Beta_HSD: 3-beta hyd 89.7 1.2 2.6E-05 42.1 7.3 24 47-70 2-27 (280)
303 TIGR01724 hmd_rel H2-forming N 89.7 3.8 8.3E-05 39.9 10.7 81 55-138 32-122 (341)
304 cd01076 NAD_bind_1_Glu_DH NAD( 89.7 0.95 2.1E-05 41.6 6.5 34 40-74 29-62 (227)
305 PF10087 DUF2325: Uncharacteri 89.7 5.8 0.00013 31.2 10.2 84 44-138 1-88 (97)
306 KOG4039 Serine/threonine kinas 89.6 2.3 4.9E-05 38.1 8.4 99 33-132 9-131 (238)
307 PRK06046 alanine dehydrogenase 89.6 0.41 8.8E-06 46.3 4.2 86 39-129 126-222 (326)
308 PTZ00082 L-lactate dehydrogena 89.6 2.8 6.1E-05 40.5 10.0 87 41-132 5-128 (321)
309 PRK05708 2-dehydropantoate 2-r 89.5 1.8 4E-05 41.3 8.6 93 42-138 2-111 (305)
310 PRK07403 glyceraldehyde-3-phos 89.5 1.2 2.5E-05 43.6 7.2 86 43-129 2-120 (337)
311 PRK14031 glutamate dehydrogena 89.5 2.5 5.3E-05 42.9 9.7 31 40-71 226-256 (444)
312 PRK14194 bifunctional 5,10-met 89.5 1.2 2.5E-05 42.9 7.1 60 41-114 158-217 (301)
313 COG1893 ApbA Ketopantoate redu 89.5 1.8 3.9E-05 41.6 8.5 93 43-138 1-108 (307)
314 PLN02272 glyceraldehyde-3-phos 89.4 1.1 2.3E-05 45.1 7.0 87 43-130 86-205 (421)
315 PRK00676 hemA glutamyl-tRNA re 89.3 0.59 1.3E-05 45.7 5.0 59 41-106 173-233 (338)
316 PRK08644 thiamine biosynthesis 89.3 1.5 3.3E-05 39.7 7.5 36 41-77 27-62 (212)
317 PLN02700 homoserine dehydrogen 88.9 1.8 3.9E-05 42.9 8.1 28 99-126 109-136 (377)
318 PRK06901 aspartate-semialdehyd 88.8 1.1 2.3E-05 43.5 6.3 88 42-134 3-98 (322)
319 PTZ00079 NADP-specific glutama 88.7 3.6 7.7E-05 41.8 10.2 112 41-158 236-375 (454)
320 PRK11150 rfaD ADP-L-glycero-D- 88.7 1.5 3.3E-05 41.1 7.3 31 45-75 2-32 (308)
321 COG3268 Uncharacterized conser 88.6 2.7 5.9E-05 41.0 8.8 123 40-168 4-141 (382)
322 COG2185 Sbm Methylmalonyl-CoA 88.5 7.2 0.00016 33.4 10.4 102 42-159 12-124 (143)
323 KOG4354 N-acetyl-gamma-glutamy 88.4 5.1 0.00011 37.6 10.1 92 37-128 14-115 (340)
324 PLN02494 adenosylhomocysteinas 88.4 1.4 3.1E-05 44.9 7.2 97 42-145 254-355 (477)
325 PRK03659 glutathione-regulated 88.3 0.98 2.1E-05 47.4 6.2 81 43-125 401-491 (601)
326 PRK08057 cobalt-precorrin-6x r 88.3 2.2 4.7E-05 39.9 7.9 86 43-129 3-98 (248)
327 PF00208 ELFV_dehydrog: Glutam 88.1 0.71 1.5E-05 43.0 4.5 112 40-158 30-169 (244)
328 TIGR00705 SppA_67K signal pept 88.1 1 2.2E-05 47.2 6.2 87 222-309 80-181 (584)
329 PRK07878 molybdopterin biosynt 88.1 1.9 4.1E-05 42.9 7.8 116 41-161 41-167 (392)
330 PRK15425 gapA glyceraldehyde-3 88.1 1.9 4.2E-05 42.0 7.6 89 43-132 3-122 (331)
331 COG0300 DltE Short-chain dehyd 88.1 1.8 4E-05 40.8 7.3 88 41-135 5-95 (265)
332 PF01370 Epimerase: NAD depend 88.1 1.6 3.4E-05 38.8 6.7 31 45-75 1-31 (236)
333 PLN02986 cinnamyl-alcohol dehy 87.9 4.5 9.7E-05 38.2 10.0 32 42-73 5-36 (322)
334 PTZ00434 cytosolic glyceraldeh 87.9 1.8 4E-05 42.5 7.3 86 43-129 4-134 (361)
335 PRK10669 putative cation:proto 87.7 1.3 2.8E-05 46.0 6.6 67 44-113 419-495 (558)
336 TIGR00640 acid_CoA_mut_C methy 87.6 3.2 6.9E-05 34.9 7.8 91 53-159 16-114 (132)
337 PLN02572 UDP-sulfoquinovose sy 87.6 4.2 9.1E-05 40.9 10.1 31 41-71 46-76 (442)
338 PRK10949 protease 4; Provision 87.5 2 4.4E-05 45.3 8.0 87 222-309 99-200 (618)
339 PRK07729 glyceraldehyde-3-phos 87.5 2.2 4.8E-05 41.8 7.7 86 43-129 3-119 (343)
340 cd01487 E1_ThiF_like E1_ThiF_l 87.4 2.6 5.6E-05 37.0 7.5 33 44-77 1-33 (174)
341 PTZ00325 malate dehydrogenase; 87.4 3.9 8.4E-05 39.7 9.3 91 40-133 6-126 (321)
342 cd06379 PBP1_iGluR_NMDA_NR1 N- 87.4 17 0.00038 35.1 14.0 146 106-261 63-234 (377)
343 COG0373 HemA Glutamyl-tRNA red 87.4 0.6 1.3E-05 46.8 3.7 73 34-109 169-248 (414)
344 PLN02206 UDP-glucuronate decar 87.3 1.9 4.2E-05 43.4 7.5 36 38-73 115-150 (442)
345 KOG1203 Predicted dehydrogenas 87.3 1.2 2.5E-05 44.6 5.7 37 40-76 77-113 (411)
346 COG1064 AdhP Zn-dependent alco 87.2 2.5 5.4E-05 41.3 7.8 36 40-77 165-200 (339)
347 PLN02427 UDP-apiose/xylose syn 87.2 2.9 6.3E-05 40.8 8.4 32 41-72 13-45 (386)
348 PRK03562 glutathione-regulated 87.0 1.6 3.4E-05 46.1 6.9 81 42-124 400-490 (621)
349 PRK06223 malate dehydrogenase; 86.9 7.2 0.00016 37.0 10.8 84 43-131 3-118 (307)
350 TIGR02371 ala_DH_arch alanine 86.9 0.89 1.9E-05 44.0 4.6 88 39-130 125-222 (325)
351 PF07755 DUF1611: Protein of u 86.9 3.3 7.2E-05 39.8 8.3 233 73-330 1-288 (301)
352 KOG0023 Alcohol dehydrogenase, 86.8 5.5 0.00012 38.8 9.6 98 41-156 181-279 (360)
353 PRK08762 molybdopterin biosynt 86.7 1.7 3.8E-05 42.8 6.6 36 41-77 134-169 (376)
354 PRK00141 murD UDP-N-acetylmura 86.7 1.1 2.4E-05 45.5 5.4 87 34-126 7-101 (473)
355 PLN02650 dihydroflavonol-4-red 86.7 4.3 9.2E-05 39.0 9.2 32 41-72 4-35 (351)
356 PRK14188 bifunctional 5,10-met 86.6 2 4.4E-05 41.2 6.8 76 41-135 157-232 (296)
357 PRK05562 precorrin-2 dehydroge 86.4 2.1 4.6E-05 39.4 6.5 37 39-77 22-58 (223)
358 TIGR03589 PseB UDP-N-acetylglu 86.4 3.4 7.5E-05 39.5 8.3 89 42-133 4-126 (324)
359 TIGR01501 MthylAspMutase methy 86.3 5.7 0.00012 33.6 8.6 94 54-159 16-119 (134)
360 PRK10538 malonic semialdehyde 86.3 2.3 4.9E-05 38.6 6.8 31 44-75 2-32 (248)
361 PLN02778 3,5-epimerase/4-reduc 86.3 3.4 7.4E-05 39.1 8.2 31 40-70 7-37 (298)
362 PRK05600 thiamine biosynthesis 86.3 2.2 4.9E-05 42.1 7.1 36 41-77 40-75 (370)
363 PF02153 PDH: Prephenate dehyd 86.1 3.7 7.9E-05 38.3 8.2 92 59-156 2-101 (258)
364 PRK12483 threonine dehydratase 86.1 3.9 8.5E-05 42.3 9.0 159 88-268 73-239 (521)
365 PRK04148 hypothetical protein; 86.1 6.2 0.00013 33.4 8.7 84 41-128 16-107 (134)
366 PRK08177 short chain dehydroge 86.1 2.6 5.7E-05 37.6 7.0 78 44-134 3-81 (225)
367 COG0451 WcaG Nucleoside-diphos 86.0 4.1 8.9E-05 37.8 8.5 30 45-75 3-32 (314)
368 PTZ00075 Adenosylhomocysteinas 86.0 1.7 3.7E-05 44.3 6.2 67 41-111 253-321 (476)
369 PRK09496 trkA potassium transp 85.8 2.7 5.9E-05 41.9 7.6 85 44-131 2-99 (453)
370 CHL00200 trpA tryptophan synth 85.7 6.3 0.00014 37.1 9.5 93 58-153 34-146 (263)
371 cd06267 PBP1_LacI_sugar_bindin 85.6 12 0.00026 33.1 11.1 60 181-242 117-184 (264)
372 PLN02591 tryptophan synthase 85.6 21 0.00046 33.3 12.9 95 58-155 21-135 (250)
373 PRK13940 glutamyl-tRNA reducta 85.4 0.79 1.7E-05 46.0 3.5 72 36-110 174-253 (414)
374 cd07020 Clp_protease_NfeD_1 No 85.4 2.9 6.3E-05 37.0 6.8 52 223-275 18-73 (187)
375 PLN02989 cinnamyl-alcohol dehy 85.4 6 0.00013 37.4 9.4 36 40-75 3-39 (325)
376 PLN02653 GDP-mannose 4,6-dehyd 85.3 6.2 0.00013 37.6 9.5 32 41-72 5-36 (340)
377 PRK05993 short chain dehydroge 85.2 3.5 7.6E-05 38.2 7.6 77 43-133 5-85 (277)
378 TIGR02964 xanthine_xdhC xanthi 85.1 8.2 0.00018 35.9 9.9 90 41-132 99-196 (246)
379 PRK14179 bifunctional 5,10-met 85.0 3.3 7.2E-05 39.5 7.3 76 41-135 157-232 (284)
380 cd00650 LDH_MDH_like NAD-depen 85.0 9.1 0.0002 35.6 10.2 32 45-77 1-36 (263)
381 PLN00203 glutamyl-tRNA reducta 85.0 0.69 1.5E-05 47.8 2.9 35 42-77 266-300 (519)
382 PRK05086 malate dehydrogenase; 84.9 5.6 0.00012 38.3 9.0 88 43-133 1-119 (312)
383 cd01338 MDH_choloroplast_like 84.9 5.8 0.00013 38.4 9.1 26 41-66 1-26 (322)
384 PRK09291 short chain dehydroge 84.6 6.8 0.00015 35.3 9.1 29 44-72 4-32 (257)
385 TIGR01763 MalateDH_bact malate 84.6 5.3 0.00012 38.3 8.7 84 43-131 2-117 (305)
386 PRK11908 NAD-dependent epimera 84.4 4 8.6E-05 39.2 7.8 31 43-74 2-33 (347)
387 PRK09496 trkA potassium transp 84.4 6.1 0.00013 39.3 9.4 86 42-129 231-328 (453)
388 PRK07411 hypothetical protein; 84.3 4.5 9.8E-05 40.2 8.2 37 41-78 37-73 (390)
389 PRK12825 fabG 3-ketoacyl-(acyl 84.1 4.6 9.9E-05 35.9 7.6 34 42-75 6-39 (249)
390 PLN02550 threonine dehydratase 84.1 5.9 0.00013 41.7 9.2 209 88-329 145-362 (591)
391 PRK00045 hemA glutamyl-tRNA re 84.1 1.1 2.4E-05 44.9 3.9 37 40-77 180-216 (423)
392 TIGR00705 SppA_67K signal pept 83.9 2.2 4.7E-05 44.8 6.1 82 179-276 306-391 (584)
393 PRK12828 short chain dehydroge 83.9 6.4 0.00014 34.8 8.5 82 42-133 7-91 (239)
394 PRK10217 dTDP-glucose 4,6-dehy 83.9 6.5 0.00014 37.6 9.0 32 43-74 2-33 (355)
395 PRK06395 phosphoribosylamine-- 83.7 4.7 0.0001 40.6 8.2 82 42-126 2-92 (435)
396 PRK07340 ornithine cyclodeamin 83.7 0.62 1.3E-05 44.7 1.8 86 39-129 122-216 (304)
397 PF13478 XdhC_C: XdhC Rossmann 83.6 4.1 9E-05 34.4 6.6 82 45-131 1-88 (136)
398 PRK06182 short chain dehydroge 83.5 6.9 0.00015 35.9 8.7 79 42-134 3-84 (273)
399 KOG2018 Predicted dinucleotide 83.4 4.2 9.1E-05 39.4 7.2 90 41-134 73-199 (430)
400 PRK10433 putative RNA methyltr 83.4 19 0.00042 33.2 11.5 64 42-108 2-79 (228)
401 PRK09186 flagellin modificatio 83.4 3.7 7.9E-05 37.1 6.7 85 42-131 4-91 (256)
402 COG1087 GalE UDP-glucose 4-epi 83.4 4.2 9.1E-05 39.2 7.2 87 44-132 2-117 (329)
403 COG1042 Acyl-CoA synthetase (N 83.4 1.6 3.4E-05 45.9 4.7 177 82-288 307-492 (598)
404 PTZ00353 glycosomal glyceralde 83.3 3.4 7.4E-05 40.4 6.8 32 43-75 3-35 (342)
405 PF02571 CbiJ: Precorrin-6x re 83.2 3.2 6.9E-05 38.8 6.3 194 43-270 1-226 (249)
406 cd07013 S14_ClpP Caseinolytic 83.2 2.9 6.4E-05 36.2 5.7 53 223-275 17-70 (162)
407 TIGR01759 MalateDH-SF1 malate 83.2 8.6 0.00019 37.3 9.5 26 41-66 2-27 (323)
408 cd01078 NAD_bind_H4MPT_DH NADP 83.1 2.9 6.4E-05 36.8 5.8 36 41-77 27-62 (194)
409 PRK08264 short chain dehydroge 83.1 7.1 0.00015 34.8 8.4 34 41-75 5-39 (238)
410 PRK01710 murD UDP-N-acetylmura 83.1 3.4 7.3E-05 41.7 6.9 78 43-126 15-104 (458)
411 TIGR01124 ilvA_2Cterm threonin 82.8 11 0.00023 38.9 10.5 159 88-268 53-219 (499)
412 cd07021 Clp_protease_NfeD_like 82.8 4.3 9.3E-05 35.9 6.7 51 224-275 19-70 (178)
413 PRK10949 protease 4; Provision 82.6 2.8 6.1E-05 44.3 6.3 112 179-308 324-451 (618)
414 PRK09224 threonine dehydratase 82.6 9.2 0.0002 39.4 9.9 159 88-268 56-222 (504)
415 PRK06141 ornithine cyclodeamin 82.6 2 4.4E-05 41.3 4.9 81 39-124 122-213 (314)
416 PRK09288 purT phosphoribosylgl 82.5 4.5 9.8E-05 39.6 7.4 88 34-125 4-100 (395)
417 PRK12827 short chain dehydroge 82.4 3.9 8.5E-05 36.5 6.5 32 42-74 6-37 (249)
418 KOG2733 Uncharacterized membra 82.4 2.6 5.6E-05 41.5 5.4 110 42-156 5-142 (423)
419 TIGR00507 aroE shikimate 5-deh 82.4 2.8 6E-05 39.2 5.6 107 41-155 116-234 (270)
420 TIGR01746 Thioester-redct thio 82.3 4.4 9.5E-05 38.3 7.1 31 44-74 1-33 (367)
421 PRK12549 shikimate 5-dehydroge 82.2 1.5 3.3E-05 41.6 3.8 67 41-110 126-203 (284)
422 PRK12829 short chain dehydroge 82.2 7 0.00015 35.3 8.2 33 41-74 10-42 (264)
423 PLN00106 malate dehydrogenase 82.2 11 0.00024 36.6 9.8 33 42-75 18-52 (323)
424 COG0616 SppA Periplasmic serin 82.0 3 6.6E-05 40.3 5.9 109 182-308 60-183 (317)
425 PLN02477 glutamate dehydrogena 82.0 6.9 0.00015 39.3 8.5 35 40-75 204-238 (410)
426 PRK03369 murD UDP-N-acetylmura 81.8 3.3 7.2E-05 42.2 6.4 87 34-126 6-97 (488)
427 cd05291 HicDH_like L-2-hydroxy 81.7 6.1 0.00013 37.7 7.8 32 44-77 2-35 (306)
428 PRK00421 murC UDP-N-acetylmura 81.7 4 8.7E-05 41.1 6.9 81 41-126 6-93 (461)
429 PRK08125 bifunctional UDP-gluc 81.7 6 0.00013 41.9 8.5 89 41-132 314-432 (660)
430 TIGR02992 ectoine_eutC ectoine 81.6 2.5 5.3E-05 40.9 5.1 82 40-126 127-220 (326)
431 PRK00066 ldh L-lactate dehydro 81.5 8.5 0.00019 37.1 8.8 87 40-131 4-121 (315)
432 cd05293 LDH_1 A subgroup of L- 81.5 14 0.0003 35.6 10.2 35 41-77 2-38 (312)
433 PRK02472 murD UDP-N-acetylmura 81.5 3.6 7.9E-05 41.0 6.4 82 42-126 5-95 (447)
434 cd01339 LDH-like_MDH L-lactate 81.5 8 0.00017 36.7 8.5 83 45-132 1-115 (300)
435 PLN02260 probable rhamnose bio 81.5 6.1 0.00013 41.7 8.4 32 41-72 5-38 (668)
436 TIGR02197 heptose_epim ADP-L-g 81.5 9.5 0.00021 35.5 9.0 29 45-74 1-30 (314)
437 TIGR01472 gmd GDP-mannose 4,6- 81.4 11 0.00023 36.1 9.4 29 44-72 2-30 (343)
438 PRK01438 murD UDP-N-acetylmura 81.2 3.2 7E-05 42.0 6.0 80 41-125 15-104 (480)
439 PLN02260 probable rhamnose bio 81.1 5.3 0.00012 42.2 7.8 82 41-132 379-481 (668)
440 PRK08291 ectoine utilization p 81.1 3 6.4E-05 40.4 5.5 82 40-126 130-223 (330)
441 TIGR00514 accC acetyl-CoA carb 81.0 6.8 0.00015 39.4 8.2 31 43-75 3-33 (449)
442 PF03720 UDPG_MGDP_dh_C: UDP-g 80.8 2.3 5.1E-05 34.0 3.9 66 46-114 1-81 (106)
443 PF02844 GARS_N: Phosphoribosy 80.6 1.7 3.7E-05 35.0 3.0 22 43-65 1-22 (100)
444 PRK12815 carB carbamoyl phosph 80.6 5.1 0.00011 45.1 7.7 75 41-116 6-99 (1068)
445 cd01336 MDH_cytoplasmic_cytoso 80.5 4.1 8.8E-05 39.5 6.2 24 42-65 2-25 (325)
446 PRK06841 short chain dehydroge 80.4 7 0.00015 35.2 7.5 83 41-134 14-99 (255)
447 PRK05653 fabG 3-ketoacyl-(acyl 80.4 9.5 0.00021 33.8 8.2 33 43-76 6-38 (246)
448 cd02071 MM_CoA_mut_B12_BD meth 80.2 12 0.00026 30.6 8.1 92 54-160 14-112 (122)
449 cd05292 LDH_2 A subgroup of L- 80.2 6.6 0.00014 37.6 7.5 84 44-132 2-116 (308)
450 cd01489 Uba2_SUMO Ubiquitin ac 80.0 7.7 0.00017 37.5 7.8 114 44-162 1-126 (312)
451 PRK07454 short chain dehydroge 80.0 3.9 8.4E-05 36.7 5.6 86 41-134 5-93 (241)
452 TIGR01035 hemA glutamyl-tRNA r 79.9 2.7 6E-05 42.1 4.9 35 41-77 179-214 (417)
453 COG3640 CooC CO dehydrogenase 79.8 28 0.0006 32.6 10.9 116 28-156 79-215 (255)
454 PRK10084 dTDP-glucose 4,6 dehy 79.7 8.9 0.00019 36.6 8.3 31 44-74 2-32 (352)
455 PRK12815 carB carbamoyl phosph 79.7 15 0.00033 41.3 11.1 85 41-126 554-657 (1068)
456 COG1648 CysG Siroheme synthase 79.5 6.1 0.00013 36.0 6.6 36 40-77 10-45 (210)
457 KOG2250 Glutamate/leucine/phen 79.5 15 0.00031 37.6 9.7 101 41-143 250-378 (514)
458 PRK08462 biotin carboxylase; V 79.5 6.7 0.00015 39.3 7.6 30 42-72 4-33 (445)
459 PRK05693 short chain dehydroge 79.4 9.3 0.0002 35.1 8.0 77 44-134 3-82 (274)
460 cd05294 LDH-like_MDH_nadp A la 79.4 19 0.00041 34.5 10.3 32 43-75 1-34 (309)
461 PRK08628 short chain dehydroge 79.3 6.4 0.00014 35.6 6.8 82 42-133 7-92 (258)
462 PRK08591 acetyl-CoA carboxylas 79.3 9.3 0.0002 38.3 8.6 30 43-74 3-32 (451)
463 PRK07877 hypothetical protein; 79.1 6.1 0.00013 42.5 7.4 108 41-155 106-225 (722)
464 COG2099 CobK Precorrin-6x redu 79.0 22 0.00048 33.4 10.2 108 42-151 2-128 (257)
465 PRK04308 murD UDP-N-acetylmura 78.9 4.2 9.1E-05 40.7 5.9 81 42-126 5-94 (445)
466 COG0362 Gnd 6-phosphogluconate 78.8 16 0.00035 36.6 9.6 108 44-158 5-127 (473)
467 cd06361 PBP1_GPC6A_like Ligand 78.8 8.7 0.00019 38.1 8.1 92 43-135 173-270 (403)
468 PRK08267 short chain dehydroge 78.6 6.6 0.00014 35.7 6.7 78 44-134 3-87 (260)
469 TIGR00243 Dxr 1-deoxy-D-xylulo 78.4 7.9 0.00017 38.5 7.4 82 43-126 2-120 (389)
470 PRK06057 short chain dehydroge 78.3 9.8 0.00021 34.5 7.8 80 42-134 7-89 (255)
471 PLN02237 glyceraldehyde-3-phos 78.3 8.9 0.00019 38.8 7.9 85 43-129 76-195 (442)
472 PF02254 TrkA_N: TrkA-N domain 78.3 2.9 6.3E-05 33.3 3.8 76 45-123 1-87 (116)
473 TIGR03026 NDP-sugDHase nucleot 78.2 5.9 0.00013 39.4 6.7 71 41-114 312-391 (411)
474 PF02737 3HCDH_N: 3-hydroxyacy 78.2 1.9 4.2E-05 38.0 2.9 73 44-121 1-102 (180)
475 PRK11858 aksA trans-homoaconit 78.2 57 0.0012 32.3 13.5 222 90-325 80-353 (378)
476 TIGR01369 CPSaseII_lrg carbamo 78.1 11 0.00023 42.4 9.3 86 40-126 552-656 (1050)
477 cd01484 E1-2_like Ubiquitin ac 78.1 8.9 0.00019 35.5 7.3 34 44-78 1-34 (234)
478 PLN02735 carbamoyl-phosphate s 77.7 6.5 0.00014 44.4 7.4 36 41-77 22-67 (1102)
479 PRK05557 fabG 3-ketoacyl-(acyl 77.7 15 0.00033 32.5 8.7 29 42-70 5-33 (248)
480 COG0702 Predicted nucleoside-d 77.5 19 0.0004 32.6 9.4 63 44-108 2-72 (275)
481 KOG0068 D-3-phosphoglycerate d 77.5 6.9 0.00015 38.3 6.5 100 28-133 130-238 (406)
482 PLN02686 cinnamoyl-CoA reducta 77.2 11 0.00024 36.7 8.2 34 41-74 52-85 (367)
483 cd00762 NAD_bind_malic_enz NAD 77.2 4.4 9.5E-05 38.0 5.1 90 41-132 24-140 (254)
484 COG1086 Predicted nucleoside-d 77.2 8.6 0.00019 40.1 7.5 97 34-133 244-377 (588)
485 PRK07985 oxidoreductase; Provi 77.0 7.2 0.00016 36.6 6.6 84 43-134 50-138 (294)
486 PRK06463 fabG 3-ketoacyl-(acyl 76.9 15 0.00032 33.3 8.5 80 42-134 7-89 (255)
487 PRK06172 short chain dehydroge 76.9 6 0.00013 35.7 5.9 85 42-134 7-94 (253)
488 cd06362 PBP1_mGluR Ligand bind 76.8 77 0.0017 31.4 14.3 78 178-261 170-251 (452)
489 cd02072 Glm_B12_BD B12 binding 76.7 20 0.00043 30.1 8.4 95 53-159 13-117 (128)
490 PRK05650 short chain dehydroge 76.6 14 0.00031 33.7 8.4 31 44-75 2-32 (270)
491 PRK10637 cysG siroheme synthas 76.5 4.8 0.0001 40.8 5.6 79 39-124 9-98 (457)
492 PRK08213 gluconate 5-dehydroge 76.4 5.6 0.00012 36.1 5.6 89 37-133 7-98 (259)
493 TIGR01202 bchC 2-desacetyl-2-h 76.4 8 0.00017 36.5 6.8 35 42-77 145-179 (308)
494 cd06338 PBP1_ABC_ligand_bindin 76.3 69 0.0015 30.1 14.6 84 180-272 141-231 (345)
495 PLN00198 anthocyanidin reducta 76.2 15 0.00033 34.9 8.8 30 42-71 9-38 (338)
496 TIGR01127 ilvA_1Cterm threonin 76.0 41 0.0009 33.0 11.9 157 87-267 35-200 (380)
497 TIGR03325 BphB_TodD cis-2,3-di 76.0 9.3 0.0002 34.8 6.9 79 42-133 5-88 (262)
498 TIGR01408 Ube1 ubiquitin-activ 76.0 9.3 0.0002 42.8 7.9 115 41-164 23-150 (1008)
499 PRK05867 short chain dehydroge 76.0 5.7 0.00012 36.0 5.5 86 41-134 8-96 (253)
500 PRK07814 short chain dehydroge 76.0 6.3 0.00014 36.0 5.8 82 42-131 10-95 (263)
No 1
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=100.00 E-value=5.4e-70 Score=515.21 Aligned_cols=292 Identities=93% Similarity=1.362 Sum_probs=266.8
Q ss_pred cccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHH
Q 020101 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA 115 (331)
Q Consensus 36 ~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~ 115 (331)
.+|.+++.+|+|.|.+|+.|..+.+.+.+||.+++++|||++.++++.|+|||++++|+|+.+++|++++++|++.++++
T Consensus 6 ~~~~~~~~~v~~~gi~~~~~~~~~~~~~~ygt~~~~gV~p~~~~~~i~G~~~y~sv~dlp~~~~~DlAvI~vPa~~v~~a 85 (300)
T PLN00125 6 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPFAAAA 85 (300)
T ss_pred eEEecCCCeEEEecCCCHHHHHHHHHHHHhCCcEEEEECCCCCCceEcCeeccCCHHHHhhccCCCEEEEecCHHHHHHH
Confidence 67888999999999999999999999999999999999999766899999999999999984348999999999999999
Q ss_pred HHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCC-CcccccCCCCCCCCCCEEEEecChHHHH
Q 020101 116 ILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG-ECKIGIMPGYIHKPGRIGIVSRSGTLTY 194 (331)
Q Consensus 116 v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~-~~~~~~~~~~~~~~G~valisQSG~~~~ 194 (331)
+++|.++|+|.++|+|+||+|.+.+++...+++++|+|++||||+|++||. +++..+.+ ..+++|+||+|||||+++.
T Consensus 86 l~e~~~~Gvk~~vIisaGf~e~g~~~~~~~~ar~~girviGPNc~Gii~~~~~~~~~~~~-~~~~~G~ValiSQSG~l~~ 164 (300)
T PLN00125 86 ILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPG-YIHKPGRIGIVSRSGTLTY 164 (300)
T ss_pred HHHHHHcCCCEEEEECCCCCcccHHHHHHHHHhhcCCEEECCCCceeecccccceeecCC-CCCCCCcEEEEeCCccHHH
Confidence 999999999999999999999875554444338999999999999999998 55555433 3467999999999999999
Q ss_pred HHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhCCCCCEEEEEeCCC
Q 020101 195 EAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLT 274 (331)
Q Consensus 195 ~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r~~KPVvv~k~Grs 274 (331)
++++|+.++|+|||++||+||+.+.|+++.|+|+||.+||+|++|++|+|++|+.++++++|+++++++||||+||+|||
T Consensus 165 ~l~~~~~~~giG~S~~VS~Gn~~~adv~~~d~L~yl~~Dp~T~~I~ly~E~~G~~~~d~~~f~~aa~~~KPVV~lk~Grs 244 (300)
T PLN00125 165 EAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFVKDPQTEGIILIGEIGGTAEEDAAAFIKESGTEKPVVAFIAGLT 244 (300)
T ss_pred HHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhhCCCCcEEEEEeccCCchHHHHHHHHHHhcCCCCEEEEEecCC
Confidence 99999999999999999999994449999999999999999999999999988888999999999988999999999999
Q ss_pred C-CCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHHHhcCC
Q 020101 275 A-PPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGL 329 (331)
Q Consensus 275 ~-~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~~~~a~~~~~~~ 329 (331)
+ . |+++||||+++++++|++++++++|||+|+++++|++||+++++.+||.+||
T Consensus 245 ~~~-g~~~sHTGala~~~~G~~~~~~a~~rq~Gvi~v~~~~el~~~~~~~~~~~~~ 299 (300)
T PLN00125 245 APP-GRRMGHAGAIVSGGKGTAQDKIKALREAGVTVVESPAKIGVAMLEVFKERGL 299 (300)
T ss_pred CCC-CCCccchhhhhcCCCCCHHHHHHHHHHCCCeEeCCHHHHHHHHHHHHHhccC
Confidence 7 5 8889999999755568999999999999999999999999999999998886
No 2
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=100.00 E-value=7.2e-70 Score=513.49 Aligned_cols=288 Identities=66% Similarity=1.073 Sum_probs=260.7
Q ss_pred ccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHH
Q 020101 37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI 116 (331)
Q Consensus 37 ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v 116 (331)
+|.+++.||+|.|.+++.|+.++++|.++||+.++||||+..++++.|+|||++++|+|+.++||++++++|++.+++++
T Consensus 3 ~~~~~~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~~v~G~~~y~sv~dlp~~~~~DlAvi~vp~~~v~~~l 82 (291)
T PRK05678 3 ILINKDTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAVEATGANASVIYVPPPFAADAI 82 (291)
T ss_pred eEecCCCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCCeEeCeeccCCHHHHhhccCCCEEEEEcCHHHHHHHH
Confidence 56688899999999999999999999999998778999992128999999999999999821299999999999999999
Q ss_pred HHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCC-CcccccCCCCCCCCCCEEEEecChHHHHH
Q 020101 117 LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG-ECKIGIMPGYIHKPGRIGIVSRSGTLTYE 195 (331)
Q Consensus 117 ~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~-~~~~~~~~~~~~~~G~valisQSG~~~~~ 195 (331)
++|.++|+|.++|+|+||++++.++|.+.+ +++|+|++||||+|++||. +++..| +...+++|+||+|||||+++.+
T Consensus 83 ~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a-~~~girvlGPNc~Gi~~~~~~~~~~~-~~~~~~~G~valiSQSGal~~~ 160 (291)
T PRK05678 83 LEAIDAGIDLIVCITEGIPVLDMLEVKAYL-ERKKTRLIGPNCPGIITPGECKIGIM-PGHIHKKGRVGVVSRSGTLTYE 160 (291)
T ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHHHHH-HHcCCEEECCCCCcccccccceeeec-CCCCCCCCCEEEEeccHHHHHH
Confidence 999999999999999999987777888888 8999999999999999998 544444 3334679999999999999999
Q ss_pred HHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhCCCCCEEEEEeCCCC
Q 020101 196 AVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275 (331)
Q Consensus 196 ~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r~~KPVvv~k~Grs~ 275 (331)
+++|+.++|+|||++||+||+++.|+++.|+|+||.+||+|++|++|+|+++++.+++++|+++. ++||||+||+||++
T Consensus 161 ~~~~~~~~giG~s~~Vs~Gn~~~~dv~~~D~l~~l~~Dp~T~~I~lylE~~~~~~~~a~~~~~~~-~~KPVV~lk~Grs~ 239 (291)
T PRK05678 161 AVAQLTDLGFGQSTCVGIGGDPINGTNFIDVLEAFEEDPETEAIVMIGEIGGSAEEEAAEYIKAN-VTKPVVGYIAGVTA 239 (291)
T ss_pred HHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEecCCcHHHHHHHHHHHc-CCCCEEEEEecCCC
Confidence 99999999999999999999974579999999999999999999999999888777888888765 58999999999999
Q ss_pred CCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHHHhc
Q 020101 276 PPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQR 327 (331)
Q Consensus 276 ~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~~~~a~~~~~ 327 (331)
+.|+++|||||+++.++|++++++++|||+|+++++|++||+++++++|+.|
T Consensus 240 ~~g~~~sHTGala~~~~g~~~~~~a~~~q~Gvi~v~~~~el~~~~~~~~~~~ 291 (291)
T PRK05678 240 PPGKRMGHAGAIISGGKGTAEEKKEALEAAGVKVARTPSEIGELLKEVLKGL 291 (291)
T ss_pred CCCCcccchhhhccCCCCCHHHHHHHHHHCCCeECCCHHHHHHHHHHHHccC
Confidence 3387899999998677799999999999999999999999999999999865
No 3
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=100.00 E-value=2.3e-69 Score=512.62 Aligned_cols=299 Identities=77% Similarity=1.224 Sum_probs=278.8
Q ss_pred CCCCCCCCcccccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceec--CcccccCHHHhhhcCCCCEE
Q 020101 26 SFTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHL--GLPVFNTVAEAKAETKANAS 103 (331)
Q Consensus 26 ~~~~~~~~l~~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~--G~p~y~sl~dl~~~~~iDla 103 (331)
-|++| +..+|.+++.+|+|.|.+|+.|+.+.+.+++||.++|++|||++.|+++. |+|||++++|+++++++|++
T Consensus 16 ~~~~~---~~~i~~~~~t~v~vqGitg~~g~~h~~~~~~ygt~iv~GV~Pgkgg~~v~~~Gvpvy~sv~ea~~~~~~D~a 92 (317)
T PTZ00187 16 RSSTS---APRVWVNKNTKVICQGITGKQGTFHTEQAIEYGTKMVGGVNPKKAGTTHLKHGLPVFATVKEAKKATGADAS 92 (317)
T ss_pred HHhcc---CccEEEcCCCeEEEecCCChHHHHHHHHHHHhCCcEEEEECCCCCCceEecCCccccCCHHHHhcccCCCEE
Confidence 36677 88999999999999999999999999999999999999999999888999 99999999999986669999
Q ss_pred EEecChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCCCcccccCCCCCCCCCCE
Q 020101 104 AIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRI 183 (331)
Q Consensus 104 ii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~~~~~~~~~~~~~~~G~v 183 (331)
++++|+..++++++||+++|++.++++|+||++.+..++++++++++|++++||||+|+++|..+..++.|...+++|+|
T Consensus 93 vI~VPa~~v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~~~~~~~~g~rliGPNc~Gii~p~~~~~gi~p~~~~~~G~V 172 (317)
T PTZ00187 93 VIYVPPPHAASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHALLSQNKTRLIGPNCPGIIKPGECKIGIMPGHIHKKGKI 172 (317)
T ss_pred EEecCHHHHHHHHHHHHHcCCCEEEEECCCCchhhHHHHHHHHhhcCCCEEECCCCceEEcchhhccccCCcCCCCCCCE
Confidence 99999999999999999999999999999999998888777664578999999999999999854566677666789999
Q ss_pred EEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhCCC
Q 020101 184 GIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTE 263 (331)
Q Consensus 184 alisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r~~ 263 (331)
|+|||||+++.++++++.++|+|||++||+||+.+.|+++.|+|+||.+||+|++|+||+|++|+.++++++|+++.+++
T Consensus 173 giVSqSGtl~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~T~~Ivl~~E~gG~~e~~aa~fi~~~~~~ 252 (317)
T PTZ00187 173 GIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLKLFLNDPETEGIILIGEIGGTAEEEAAEWIKNNPIK 252 (317)
T ss_pred EEEeCCHHHHHHHHHHHHHcCCCEEEEEEeCCCCCCCCCHHHHHHHHhhCCCccEEEEEEecCCchhHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999987899999999999999999999999999999999999999986689
Q ss_pred CCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHHHhc
Q 020101 264 KPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQR 327 (331)
Q Consensus 264 KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~~~~a~~~~~ 327 (331)
||||+||+|||++.|+++|||||+++...|+++.++++|+|+|+++++|++||.++++.+++.+
T Consensus 253 KPVVa~~aGrsap~G~r~gHaGAi~~~~~G~~~~k~aal~qaGv~v~~~~~el~~~~~~~~~~~ 316 (317)
T PTZ00187 253 KPVVSFIAGITAPPGRRMGHAGAIISGGKGTAPGKIEALEAAGVRVVKSPAQLGKTMLEVMKKK 316 (317)
T ss_pred CcEEEEEecCCCCCCCcccchhhhhccCCCCHHHHHHHHHHCCCeEeCCHHHHHHHHHHHHHhc
Confidence 9999999999984488899999999777899999999999999999999999999999988765
No 4
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=100.00 E-value=1.5e-68 Score=503.47 Aligned_cols=283 Identities=64% Similarity=1.064 Sum_probs=258.0
Q ss_pred cCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHH
Q 020101 38 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAIL 117 (331)
Q Consensus 38 l~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~ 117 (331)
|.+++.+|+|.|.+|+.|+.+.+++..+|++++++|||+..++++.|+|||+|++|+|+..+||++++++|++.++++++
T Consensus 2 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~~~~~~v~G~~~y~sv~dlp~~~~~Dlavi~vpa~~v~~~l~ 81 (286)
T TIGR01019 2 LLDKDTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFDSVKEAVEETGANASVIFVPAPFAADAIF 81 (286)
T ss_pred eecCCCcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCCCCcceecCeeccCCHHHHhhccCCCEEEEecCHHHHHHHHH
Confidence 44778899999999999999999999999999999999944489999999999999998323899999999999999999
Q ss_pred HHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCC-CcccccCCCCCCCCCCEEEEecChHHHHHH
Q 020101 118 EAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG-ECKIGIMPGYIHKPGRIGIVSRSGTLTYEA 196 (331)
Q Consensus 118 ~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~-~~~~~~~~~~~~~~G~valisQSG~~~~~~ 196 (331)
+|.++|+|.++++|+||+|.++++|.+.+ +++|+|++||||+|++||. +++.+|.+ ..+++|+||+|||||+++.++
T Consensus 82 e~~~~Gvk~avIis~Gf~e~~~~~l~~~a-~~~girilGPNc~Giin~~~~~~~~~~~-~~~~~G~ValiSQSG~l~~~~ 159 (286)
T TIGR01019 82 EAIDAGIELIVCITEGIPVHDMLKVKRYM-EESGTRLIGPNCPGIITPGECKIGIMPG-HIHKPGNVGIVSRSGTLTYEA 159 (286)
T ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHHHH-HHcCCEEECCCCceEEcccccceeeccc-cCCCCCcEEEEeccHHHHHHH
Confidence 99999999999999999998778898888 8999999999999999998 66666644 346799999999999999999
Q ss_pred HHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhCCCCCEEEEEeCCCCC
Q 020101 197 VFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAP 276 (331)
Q Consensus 197 ~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r~~KPVvv~k~Grs~~ 276 (331)
++|+.++|+|||++||+||+++.|+++.|+|+||.+||+|++|++|+|++|++++++++|++++ ++||||++|+||+++
T Consensus 160 ~~~a~~~giG~S~~Vs~Gn~a~~dv~~~D~l~~l~~Dp~T~~I~lylE~~~~~~~~~~~~~~~~-~~KPVV~lk~Grs~~ 238 (286)
T TIGR01019 160 VHQLTKAGFGQSTCVGIGGDPVNGTSFIDVLEAFEKDPETEAIVMIGEIGGSAEEEAADFIKQN-MSKPVVGFIAGATAP 238 (286)
T ss_pred HHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEecCCchHHHHHHHHHhc-CCCCEEEEEecCCCC
Confidence 9999999999999999999975579999999999999999999999999888888888888774 689999999999983
Q ss_pred CCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHH
Q 020101 277 PGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEV 323 (331)
Q Consensus 277 ~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~~~~a~ 323 (331)
.|+++|||||+++.+.|++++++++|||+|+++++|++||+|+++.+
T Consensus 239 ~g~~~sHTGala~~~~g~~~~~~aa~rqaGvi~v~~~~el~d~l~~~ 285 (286)
T TIGR01019 239 PGKRMGHAGAIISGGKGTAESKIEALEAAGVTVVKSPSDIGELLAEI 285 (286)
T ss_pred ccccccchhhhhcCCCCCHHHHHHHHHHCCCeEeCCHHHHHHHHHHh
Confidence 27779999999866668999999999999999999999999999864
No 5
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=100.00 E-value=4.9e-64 Score=501.28 Aligned_cols=272 Identities=26% Similarity=0.361 Sum_probs=247.2
Q ss_pred cccccCCCCeEEEEEcCCC---CCCcHHHHHHHHcCCe-EEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecCh
Q 020101 34 APAVFVDKNTRVICQGITG---KNGTFHTEQAIEYGTK-MVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP 109 (331)
Q Consensus 34 l~~ll~~k~~~VaIvGasg---k~G~~~~~~l~~~g~~-iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~ 109 (331)
|+.||.|++ |+|||+|. ++|+.++++++++||+ -+++|||++ +++.|+|||++++|+|+ .+|++++++|+
T Consensus 1 l~~l~~p~s--iavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~--~~i~G~~~~~sl~~lp~--~~Dlavi~vp~ 74 (447)
T TIGR02717 1 LEHLFNPKS--VAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKA--GEILGVKAYPSVLEIPD--PVDLAVIVVPA 74 (447)
T ss_pred CccccCCCE--EEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCC--CccCCccccCCHHHCCC--CCCEEEEecCH
Confidence 467898887 56699995 4577888999999984 445999998 79999999999999998 79999999999
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCChhH------HHHHHHHHhccCCcEEEccCCCCcccCC-CcccccCCCCCCCCCC
Q 020101 110 PFAAAAILEAMEAELDLVVCITEGIPQHD------MVRVKAALNNQSKTRLVGPNCPGVIKPG-ECKIGIMPGYIHKPGR 182 (331)
Q Consensus 110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~------~~~l~~~a~~~~gi~viGPnc~Gi~~p~-~~~~~~~~~~~~~~G~ 182 (331)
+.+++++++|.++|++.+|++++||+|.+ .+++.+++ +++|++++||||+|++||. +++.+|.+. .+++|+
T Consensus 75 ~~~~~~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a-~~~girvlGPnc~G~~~~~~~l~~~~~~~-~~~~G~ 152 (447)
T TIGR02717 75 KYVPQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIA-RKYGMRLLGPNCLGIINTHIKLNATFAPT-MPKKGG 152 (447)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHH-HHcCCEEEecCeeeEecCCCCeeeecCCC-CCCCCC
Confidence 99999999999999999999999998743 35777777 8999999999999999998 777777554 367999
Q ss_pred EEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC-
Q 020101 183 IGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG- 261 (331)
Q Consensus 183 valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r- 261 (331)
||+|||||+++.++++|+.++|+|||++||+||++ |+++.|+|+||.+||+|++|++|+|+ ++|+++|++++|
T Consensus 153 valvsqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~--d~~~~d~l~~l~~D~~t~~I~ly~E~----~~~~~~f~~aa~~ 226 (447)
T TIGR02717 153 IAFISQSGALLTALLDWAEKNGVGFSYFVSLGNKA--DIDESDLLEYLADDPDTKVILLYLEG----IKDGRKFLKTARE 226 (447)
T ss_pred EEEEechHHHHHHHHHHHHhcCCCcceEEECCchh--hCCHHHHHHHHhhCCCCCEEEEEecC----CCCHHHHHHHHHH
Confidence 99999999999999999999999999999999998 99999999999999999999999998 568999999886
Q ss_pred --CCCCEEEEEeCCCCCCCCC--CCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHH
Q 020101 262 --TEKPIVAFIAGLTAPPGRR--MGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVF 324 (331)
Q Consensus 262 --~~KPVvv~k~Grs~~~g~~--~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~~~~a~~ 324 (331)
++||||+||+||++. |++ .||||+++ |++++|+++|||+|+++++|++||+++++.+-
T Consensus 227 a~~~KPVv~~k~Grs~~-g~~aa~sHtgala----g~~~~~~a~~~~~Gv~~~~~~~el~~~~~~l~ 288 (447)
T TIGR02717 227 ISKKKPIVVLKSGTSEA-GAKAASSHTGALA----GSDEAYDAAFKQAGVIRADSIEELFDLARLLS 288 (447)
T ss_pred HcCCCCEEEEecCCChh-hhhhhhhcccccc----ChHHHHHHHHHHCCeEEeCCHHHHHHHHHHHh
Confidence 689999999999998 765 79999999 89999999999999999999999999999643
No 6
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=2.4e-54 Score=397.22 Aligned_cols=290 Identities=67% Similarity=1.076 Sum_probs=278.1
Q ss_pred cccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHH
Q 020101 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA 115 (331)
Q Consensus 36 ~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~ 115 (331)
.+|.+|+.+|+|.|.+|++|+.+.+.++++|+++|++|+|...|.++.|+|+|.+++|..++++.|+.++|+|+..+.+.
T Consensus 2 ~il~~k~tkvivqGitg~~gtfh~~~~l~yGt~~V~GvtPgkgG~~~~g~PVf~tV~EA~~~~~a~~svI~Vp~~~aada 81 (293)
T COG0074 2 SILLNKDTKVIVQGITGKQGTFHTEQMLAYGTKIVGGVTPGKGGQTILGLPVFNTVEEAVKETGANASVIFVPPPFAADA 81 (293)
T ss_pred ceeecCCCeEEEeccccccchHHHHHHHHhCCceeecccCCCCceEEcCccHHHHHHHHHHhhCCCEEEEecCcHHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCCCcccccCCCCCCCCCCEEEEecChHHHHH
Q 020101 116 ILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYE 195 (331)
Q Consensus 116 v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~~~~~~~~~~~~~~~G~valisQSG~~~~~ 195 (331)
+.|++++|++.++++|+|++..|+.++.+++ ++.|++++||||.|++.|..+.+++.|.+.+++|+|++||.||++..+
T Consensus 82 i~EAida~i~liv~ITEgIP~~D~~~~~~~a-~~~g~~iiGPncpGiI~Pg~~kiGimp~~i~~~G~IGiVSrSGTLTyE 160 (293)
T COG0074 82 ILEAIDAGIKLVVIITEGIPVLDMLELKRYA-REKGTRLIGPNCPGIITPGECKIGIMPGNIYKPGNIGIVSRSGTLTYE 160 (293)
T ss_pred HHHHHhCCCcEEEEEeCCCCHHHHHHHHHHH-HhcCCEEECCCCCccCcCCcceeeechhhhccCCceEEEecCcchHHH
Confidence 9999999999999999999999999999998 889999999999999999988899999998999999999999999999
Q ss_pred HHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC-CCCCEEEEEeCCC
Q 020101 196 AVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG-TEKPIVAFIAGLT 274 (331)
Q Consensus 196 ~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r-~~KPVvv~k~Grs 274 (331)
+.+...+.|+|.|+.|++|++.+++++|.|+|+.|++||+|++|+|..|.+|+.+..+++|+++ . .+||||+|-+|++
T Consensus 161 ~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~fe~Dp~T~~ivmiGEiGG~aEe~AA~~i~~-~~~~KPVVa~iaG~t 239 (293)
T COG0074 161 AVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPETEAIVMIGEIGGPAEEEAAEYIKA-NATRKPVVAYIAGRT 239 (293)
T ss_pred HHHHHHhcCCceEEEEEeCCCCcCCccHHHHHHHHhcCccccEEEEEecCCCcHHHHHHHHHHH-hccCCCEEEEEeccC
Confidence 9999999999999999999999999999999999999999999999999999999999999998 5 4599999999999
Q ss_pred CCCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHHHhc
Q 020101 275 APPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQR 327 (331)
Q Consensus 275 ~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~~~~a~~~~~ 327 (331)
++.|++++|+||+.+...|+++.+.++|+.+|+.+++++.++.+.++.+++.+
T Consensus 240 ap~gkrmGhaGaiv~~~~gta~~Ki~al~~aGv~v~etp~~l~~~l~~vl~~~ 292 (293)
T COG0074 240 APEGKRMGHAGAIVSGGKGTAESKIAALEAAGVKVAETPAELGELLLEVLKGR 292 (293)
T ss_pred CCccchhhhhhhhhcCCCccHHHHHHHHHHcCCeecCCHHHHHHHHHHHhhcc
Confidence 98888999999999888899999999999999999999999999999888765
No 7
>PLN02522 ATP citrate (pro-S)-lyase
Probab=100.00 E-value=5.1e-53 Score=429.36 Aligned_cols=284 Identities=28% Similarity=0.448 Sum_probs=239.6
Q ss_pred cccCCCCeEEEEEcCCCCCCcHHHHHHHHcCC-------eEEEEeCCCCC-------CceecCcccccCHHHhhhcC-CC
Q 020101 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGT-------KMVGGVTPKKG-------GTEHLGLPVFNTVAEAKAET-KA 100 (331)
Q Consensus 36 ~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~-------~iv~~VnP~~~-------g~~i~G~p~y~sl~dl~~~~-~i 100 (331)
.+|.+ .++.++.|- ....++.|++++| .+.+.|+|..+ |+++.|+|+|++++|..+++ ++
T Consensus 5 ~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iPVf~tv~eA~~~~~~~ 79 (608)
T PLN02522 5 QLFSR-TTQALFYNY----KQLPVQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEEIAIPVHGSIEAACKAHPTA 79 (608)
T ss_pred eeecC-CceeEEEcC----cHHHHHhhhccceeccCCCCeeEEEEcCCCCcceeEecCCEeeCccccchHHHHHHhCCCC
Confidence 45644 455567774 5667778887764 25566899652 34577999999999998775 79
Q ss_pred CEEEEecChhhHHHHH-HHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCCCcccccCC-----
Q 020101 101 NASAIYVPPPFAAAAI-LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMP----- 174 (331)
Q Consensus 101 Dlaii~vp~~~~~~~v-~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~~~~~~~~~----- 174 (331)
|+.++|+|+..+.+.+ ++|.++|++.++|+|+||+|.+++++.+.+ +++|++++||||+|+++|..++++..+
T Consensus 80 ~~~vifvp~~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~A-r~~g~rlIGPNc~Gii~p~~~kig~~~~~~~~ 158 (608)
T PLN02522 80 DVFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYA-RANNKVVIGPATVGGIQAGAFKIGDTAGTLDN 158 (608)
T ss_pred cEEEEeCChHHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHH-HHcCCEEECCCCCeeEccCccccccccccccc
Confidence 9999999998877655 555567999999999999999999999998 899999999999999999854454433
Q ss_pred ---CCCCCCCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHH
Q 020101 175 ---GYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEE 251 (331)
Q Consensus 175 ---~~~~~~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~ 251 (331)
...+++|+||+|||||+++.++++++.++|+|||++||+||+.++|+++.|+|+||.+||+|++|++|+|.. .+
T Consensus 159 ~~~~~~~~pG~VgiVSqSGtL~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~Tk~IvlygEiG---g~ 235 (608)
T PLN02522 159 IIQCKLYRPGSVGFVSKSGGMSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGELG---GR 235 (608)
T ss_pred ccCcCCCCCCcEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEecC---ch
Confidence 133579999999999999999999999999999999999999977899999999999999999999999943 46
Q ss_pred HHHHHHHHhC---CCCCEEEEEeCCCCC---CCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHHH
Q 020101 252 DAAALIKESG---TEKPIVAFIAGLTAP---PGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK 325 (331)
Q Consensus 252 ~~~~f~~a~r---~~KPVvv~k~Grs~~---~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~~~~a~~~ 325 (331)
++++|+++++ ++||||+||+||+++ .++++|||||+++++++++++++++|||+|+++++|++||.++++.+|+
T Consensus 236 ~e~~f~ea~~~a~~~KPVVa~kaGrsa~~~~~~aa~gHtGAiag~~~~ta~~k~aAlr~aGv~vv~s~~El~~~~~~~~~ 315 (608)
T PLN02522 236 DEYSLVEALKQGKVSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAGAIVPTSFEALEAAIKETFE 315 (608)
T ss_pred hHHHHHHHHHHhcCCCCEEEEeccCCCccCccccccccccccccCCCccHHHHHHHHHHCCCeEeCCHHHHHHHHHHHHH
Confidence 7788887765 789999999999994 2456999999997666677999999999999999999999999999998
Q ss_pred hcC
Q 020101 326 QRG 328 (331)
Q Consensus 326 ~~~ 328 (331)
+|-
T Consensus 316 ~~~ 318 (608)
T PLN02522 316 KLV 318 (608)
T ss_pred HHH
Confidence 763
No 8
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=2.1e-50 Score=361.57 Aligned_cols=311 Identities=73% Similarity=1.174 Sum_probs=289.0
Q ss_pred ccccccCCCCCCCCCCCCcccccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhh
Q 020101 16 SSEICCGQSRSFTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95 (331)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~l~~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~ 95 (331)
+.-+|--.+..|+.| +..++.+|..+|++.|.+||.|.++.+..++||.++|++|||+..|.+.+|.|+|.|++|..
T Consensus 15 ~~~~~~~~~s~y~~T---~~nl~ink~TkVi~QGfTGKqgTFHs~q~~eYgTk~VgG~~pkK~Gt~HLG~PVF~sV~eA~ 91 (329)
T KOG1255|consen 15 SLGILRVFKSLYNKT---ISNLKINKDTKVICQGFTGKQGTFHSQQALEYGTKVVGGVNPKKGGTTHLGLPVFNSVAEAK 91 (329)
T ss_pred Ccchhhhhcchhhhh---hhceeecCCceEEEecccCCccceeHHHHHHhCCceeeccCCCcCcccccCchhhhhHHHHH
Confidence 444444446678888 67789999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCCCcccccCCC
Q 020101 96 AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPG 175 (331)
Q Consensus 96 ~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~~~~~~~~~~ 175 (331)
++..+|.-+|++||..+...++|++++-|+.++++|+|+++.|+.++......+..-|++||||.||++|.++.++.+|.
T Consensus 92 ~~t~a~AsvIyVPpp~Aa~aI~eaieaEipLiVcITEGIPQhDMvrvk~~L~~Q~KtRLvGPNCPGII~p~qckIGImPg 171 (329)
T KOG1255|consen 92 KETGADASVIYVPPPFAAAAIEEAIEAEIPLIVCITEGIPQHDMVRVKHALNSQSKTRLVGPNCPGIINPGQCKIGIMPG 171 (329)
T ss_pred HhhCCCceEEEeCChhHHHHHHHHHhccCCEEEEecCCCchhhHHHHHHHHhhcccceecCCCCCCccCccceeeccccc
Confidence 98899999999999999999999999999999999999999999988876656777899999999999999999999999
Q ss_pred CCCCCCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHH
Q 020101 176 YIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAA 255 (331)
Q Consensus 176 ~~~~~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~ 255 (331)
...++|.|++||.||.+..+......+-|+|-|.+|.+|++.+++.+|-|.|+.|.+||+|+.|+|..|.+|+.+.++.+
T Consensus 172 ~Ihk~G~IGIVSRSGTLTYEaVhQTT~vglGQslcvGiGGDpFnGT~FID~L~vFl~D~~t~GIiliGEIGG~AEe~AA~ 251 (329)
T KOG1255|consen 172 HIHKRGKIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTNFIDCLEVFLEDPETEGIILIGEIGGSAEEEAAE 251 (329)
T ss_pred ccccCCeeEEEecCCceeehhhhhhccccccceeEEeecCCCCCCccHHHHHHHHhcCcccceEEEEeccCChhhHHHHH
Confidence 98999999999999999999988888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhC---CCCCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHHHhcCC
Q 020101 256 LIKESG---TEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGL 329 (331)
Q Consensus 256 f~~a~r---~~KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~~~~a~~~~~~~ 329 (331)
|+++.. ..||||-+.+|.+.+.|+|.+|+|++.++++|++..+.++|+.+||++++++..|-.++...|..+.|
T Consensus 252 flk~~nSg~~~kPVvsFIAG~tAppGrRMGHaGAIisGgkg~A~dKi~aL~~agV~vt~sPa~lG~~~~~~~~~~kl 328 (329)
T KOG1255|consen 252 FLKEYNSGSTAKPVVSFIAGVTAPPGRRMGHAGAIISGGKGTAKDKIAALRDAGVVVTESPAKLGSAMLEEFLKLKL 328 (329)
T ss_pred HHHHhccCCCCCceeEEeecccCCCcccccccceeeeCCCccHHHHHHHHHhcCeEEEcCHHHHHHHHHHHHHhccC
Confidence 999853 78999999999999889999999999999999999999999999999999999998888766665544
No 9
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=100.00 E-value=5.9e-51 Score=415.52 Aligned_cols=273 Identities=25% Similarity=0.364 Sum_probs=247.2
Q ss_pred CcccccCCCCeEEEEEcCCCCC---CcHHHHHHHHcCCe-EEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecC
Q 020101 33 PAPAVFVDKNTRVICQGITGKN---GTFHTEQAIEYGTK-MVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVP 108 (331)
Q Consensus 33 ~l~~ll~~k~~~VaIvGasgk~---G~~~~~~l~~~g~~-iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp 108 (331)
+|+.+|.|++++ |||||+++ |+.+.++|+++| + -++||||++ +++.|++||+++.++|. .+|+++++||
T Consensus 3 ~l~~~~~p~sva--vigas~~~~~vg~~i~~nL~~~g-~g~i~PVnp~~--~~v~G~~ay~s~~~lp~--~~dlav~~v~ 75 (598)
T COG1042 3 DLERLFAPKSIA--VIGASERPGKLGYEILRNLLEYG-QGKIYPVNPKY--DEVLGVKAYTSVADLPD--APDLAVIVVP 75 (598)
T ss_pred chhhhhCCceEE--EeeccCCcchhHHHHHHHHHhcC-CCceEecCccc--cccccccccchHhhCCC--CCCeeEEEec
Confidence 488999999864 59999765 566778898887 3 344999999 79999999999999998 8999999999
Q ss_pred hhhHHHHHHHHHHcCCcEEEEecCCCChhH------HHHHHHHHhccCCcEEEccCCCCcccCC-CcccccCCCCCCC-C
Q 020101 109 PPFAAAAILEAMEAELDLVVCITEGIPQHD------MVRVKAALNNQSKTRLVGPNCPGVIKPG-ECKIGIMPGYIHK-P 180 (331)
Q Consensus 109 ~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~------~~~l~~~a~~~~gi~viGPnc~Gi~~p~-~~~~~~~~~~~~~-~ 180 (331)
+..+++++++|.++|++.+|+++.||.|.. ..++.+.| ++++++++||||+|++++. ++|..|.|..... +
T Consensus 76 ~~~~~~i~~~~~~kGv~~~i~is~gf~e~~~~~~~~e~~~~~~a-~~~~~rligPn~~G~~~~~~glna~f~p~~~~~~~ 154 (598)
T COG1042 76 AKVVPEIVHELGEKGVKGAIVISAGFREAGEEGMELEKELVEAA-RKYGMRIIGPNCLGLINPIIGLNATFDPVFGLGRG 154 (598)
T ss_pred hhhhHHHHHHhhccCCceEEEechhhhHHhhhHhHHHHHHHHHH-HhcCceEeccccccccccccccccccCcccccccC
Confidence 999999999999999999999999998743 23455555 8999999999999999998 8899998875332 8
Q ss_pred CCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHh
Q 020101 181 GRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKES 260 (331)
Q Consensus 181 G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~ 260 (331)
|+++++||||+++..+++|+.+.++|+|+++|.||++ |+++.|+++||.+|+.|++|.||+|+ .+++++|++++
T Consensus 155 g~~afvsqsgav~~~il~~~~~~~~g~s~~vs~gn~a--d~~~~d~~~~~~~D~~tk~i~Ly~E~----~~~~r~fl~~a 228 (598)
T COG1042 155 GGGAFVSQSGAVSFAILDWANEDGMGFSIKVSLGNAA--DRDESDLLEYLADDPRTKAIGLYIEG----VKDGRKFLNAA 228 (598)
T ss_pred CCeEEEEechHHHHhccchhhhcCCceeEEEeecchh--hcCchHhHHHHhhCccceEEEEEecc----chhHHHHHHHH
Confidence 9999999999999999999999999999999999998 99999999999999999999999998 56999999998
Q ss_pred C---CCCCEEEEEeCCCCCCCCC--CCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHH
Q 020101 261 G---TEKPIVAFIAGLTAPPGRR--MGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVF 324 (331)
Q Consensus 261 r---~~KPVvv~k~Grs~~~g~~--~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~~~~a~~ 324 (331)
| ++||+|++|+||+.. +++ .||||+++ |++.+|+++|+|+|++++++++||++.++++.
T Consensus 229 ~~~~~~kpii~lk~gr~~~-~akAa~shTgsla----g~~~~y~Aa~~~agvir~~~~~elf~~~k~l~ 292 (598)
T COG1042 229 RAAERKKPIIALKAGRSEA-GAKAAASHTGSLA----GSDEAYDAAFKQAGVIRVESIEELFDAAKALS 292 (598)
T ss_pred HHHhcCCCEEEEeccCCHH-HHHHHhccccccc----ccchhhHHHHHhhCceeccChHHHHHHHHHhc
Confidence 7 889999999999999 665 69999999 89999999999999999999999999999854
No 10
>PRK06091 membrane protein FdrA; Validated
Probab=100.00 E-value=3.1e-39 Score=323.25 Aligned_cols=209 Identities=22% Similarity=0.312 Sum_probs=176.8
Q ss_pred cccccCHHHhhhc-CCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcc
Q 020101 85 LPVFNTVAEAKAE-TKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVI 163 (331)
Q Consensus 85 ~p~y~sl~dl~~~-~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~ 163 (331)
.|.|+++.++.++ +++|++++++|++.+++.+++|+++| +.+++||+||+.+.+++|.++| +++|++++|||| |+.
T Consensus 102 ~~~~~t~~~a~~~lpe~DLAvIsVPa~~v~~al~ea~~~G-~~viI~S~gfg~~~E~~L~e~A-r~~GlrvmGPNC-G~~ 178 (555)
T PRK06091 102 LTQVRRWDSACQKLPDANLALISVAGEYAAELAEQALDRN-LNVMMFSDNVTLEDEIRLKTRA-REKGLLVMGPDC-GTA 178 (555)
T ss_pred CcccccHHHHHhcCCCCCEEEEecCHHHHHHHHHHHHHcC-CeEEEEcCCCCHHHHHHHHHHH-HHcCCEEECCCC-hhh
Confidence 4455555444332 24699999999999999999999999 5578899999988888999998 899999999999 766
Q ss_pred cCCCcccccCCCCCCCCCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCC----CCCCHHHHHHHhhcCCCccEE
Q 020101 164 KPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPF----NGTNFVDCVTKFIADPQTEGI 239 (331)
Q Consensus 164 ~p~~~~~~~~~~~~~~~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~----~~v~~~d~l~~l~~Dp~T~~I 239 (331)
+..+++++|.+. +++|+||+|||||+++.++++|+.++|+|||++||+||+.. .|+++.|+|+||.+||+|++|
T Consensus 179 ~i~gl~lsF~~~--~~~G~IgiVSQSGtl~~~v~~~a~~~GiG~S~~Vs~Gn~Dls~~~ggi~~~D~L~~L~~DP~TkvI 256 (555)
T PRK06091 179 MIAGTPLAFANV--MPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSAEVGGISALTALEMLSADEKSEVI 256 (555)
T ss_pred hhcCCcccccCC--CCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEEEECCCCccccccCCCCHHHHHHHHhhCCCCcEE
Confidence 655777777543 46999999999999999999999999999999999999931 388999999999999999999
Q ss_pred EEEEccCCCcHHHHHHHHHHhC-CCCCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHH
Q 020101 240 ILIGEIGGTAEEDAAALIKESG-TEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGA 318 (331)
Q Consensus 240 ~ly~E~~g~~~~~~~~f~~a~r-~~KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~ 318 (331)
++|+|.....++ ++|++++| .+||||++|+||++. |. +|+|+++++|++|+.+
T Consensus 257 vly~kppaE~v~--~~fl~aar~~~KPVVvlk~Grs~~----------------g~--------~q~GVi~a~tleEl~~ 310 (555)
T PRK06091 257 AFVSKPPAEAVR--LKIINAMKATGKPVVALFLGYTPA----------------VA--------RDENVWFASTLDEAAR 310 (555)
T ss_pred EEEEecCchHHH--HHHHHHHhhCCCCEEEEEecCCch----------------hh--------hcCCeEEeCCHHHHHH
Confidence 999933211144 49999987 899999999999887 22 9999999999999999
Q ss_pred HHHHHH
Q 020101 319 AMLEVF 324 (331)
Q Consensus 319 ~~~a~~ 324 (331)
.+.++.
T Consensus 311 ~A~~la 316 (555)
T PRK06091 311 LACLLS 316 (555)
T ss_pred HHHHHh
Confidence 998754
No 11
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=100.00 E-value=9.5e-41 Score=283.55 Aligned_cols=132 Identities=29% Similarity=0.439 Sum_probs=95.6
Q ss_pred CCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHH
Q 020101 180 PGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKE 259 (331)
Q Consensus 180 ~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a 259 (331)
||+||+|||||+++.++++++.++|+|||++||+||++ |+++.|+|+||.+||+|++|++|+|+ ++|+++|+++
T Consensus 1 ~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~--dv~~~d~l~~~~~D~~t~~I~ly~E~----~~d~~~f~~~ 74 (138)
T PF13607_consen 1 PGGVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEA--DVDFADLLEYLAEDPDTRVIVLYLEG----IGDGRRFLEA 74 (138)
T ss_dssp E-SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-S--SS-HHHHHHHHCT-SS--EEEEEES------S-HHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccc--cCCHHHHHHHHhcCCCCCEEEEEccC----CCCHHHHHHH
Confidence 69999999999999999999999999999999999998 99999999999999999999999999 5688999998
Q ss_pred hC---CCCCEEEEEeCCCCCCCCC--CCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHH
Q 020101 260 SG---TEKPIVAFIAGLTAPPGRR--MGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLE 322 (331)
Q Consensus 260 ~r---~~KPVvv~k~Grs~~~g~~--~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~~~~a 322 (331)
+| +.||||+||+||++. |++ .||||+++ |++.+|+++|||+|+++++|++||++++++
T Consensus 75 ~~~a~~~KPVv~lk~Grt~~-g~~aa~sHTgsla----g~~~~~~a~~~~aGv~~v~~~~el~~~~~~ 137 (138)
T PF13607_consen 75 ARRAARRKPVVVLKAGRTEA-GARAAASHTGSLA----GDDAVYDAALRQAGVVRVDDLDELLDAAKA 137 (138)
T ss_dssp HHHHCCCS-EEEEE--------------------------HHHHHHHHHHCTEEEESSHHHHHHHHCC
T ss_pred HHHHhcCCCEEEEeCCCchh-hhhhhhccCCccc----CcHHHHHHHHHHcCceEECCHHHHHHHHHh
Confidence 76 569999999999999 666 79999999 899999999999999999999999999874
No 12
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=99.89 E-value=2.8e-23 Score=171.61 Aligned_cols=112 Identities=24% Similarity=0.386 Sum_probs=85.6
Q ss_pred EEEEEcCCCC---CCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHHH
Q 020101 44 RVICQGITGK---NGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAM 120 (331)
Q Consensus 44 ~VaIvGasgk---~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~ 120 (331)
+|+|||+|.+ +|+.+++++++.|++++ +|||+. ++++|.++|++++|+|+ ++|++++++|++.+.+++++|.
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~G~~v~-~Vnp~~--~~i~G~~~y~sl~e~p~--~iDlavv~~~~~~~~~~v~~~~ 76 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAAGYEVY-PVNPKG--GEILGIKCYPSLAEIPE--PIDLAVVCVPPDKVPEIVDEAA 76 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHTT-EEE-EESTTC--SEETTEE-BSSGGGCSS--T-SEEEE-S-HHHHHHHHHHHH
T ss_pred EEEEEcccCCCCChHHHHHHHHHhCCCEEE-EECCCc--eEECcEEeeccccCCCC--CCCEEEEEcCHHHHHHHHHHHH
Confidence 5788999965 45667788888999987 999999 89999999999999766 8999999999999999999999
Q ss_pred HcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccC
Q 020101 121 EAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKP 165 (331)
Q Consensus 121 ~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p 165 (331)
++|++.+|+ .+| +..+++.+++ +++|++++||||+|+++|
T Consensus 77 ~~g~~~v~~-~~g---~~~~~~~~~a-~~~gi~vigp~C~gv~~~ 116 (116)
T PF13380_consen 77 ALGVKAVWL-QPG---AESEELIEAA-REAGIRVIGPNCLGVVNP 116 (116)
T ss_dssp HHT-SEEEE--TT---S--HHHHHHH-HHTT-EEEESS-HHHHHT
T ss_pred HcCCCEEEE-Ecc---hHHHHHHHHH-HHcCCEEEeCCcceEEcC
Confidence 999999885 555 3334555666 789999999999999875
No 13
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=99.81 E-value=4.1e-20 Score=154.16 Aligned_cols=124 Identities=18% Similarity=0.267 Sum_probs=106.9
Q ss_pred cccccCCCCeEEEEEcCCCCC---CcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChh
Q 020101 34 APAVFVDKNTRVICQGITGKN---GTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPP 110 (331)
Q Consensus 34 l~~ll~~k~~~VaIvGasgk~---G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~ 110 (331)
|..+| .+..+|+|||+|.++ ++.+++.|++.||+++ ||||+..|++++|.++|+||+|+|+ ++|++.+|.+++
T Consensus 9 i~~iL-~~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~Vi-PVNP~~~~~eiLG~k~y~sL~dIpe--~IDiVdvFR~~e 84 (140)
T COG1832 9 IAEIL-KSAKTIAVVGASDKPDRPSYRVAKYLQQKGYRVI-PVNPKLAGEEILGEKVYPSLADIPE--PIDIVDVFRRSE 84 (140)
T ss_pred HHHHH-HhCceEEEEecCCCCCccHHHHHHHHHHCCCEEE-eeCcccchHHhcCchhhhcHHhCCC--CCcEEEEecChh
Confidence 77777 446778899999865 5667889999999999 9999887789999999999999997 899999999999
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCC
Q 020101 111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG 166 (331)
Q Consensus 111 ~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~ 166 (331)
.++++++++++.|++.+| ++.|...++..+ .+ +++|+.++...|+.+-.+.
T Consensus 85 ~~~~i~~eal~~~~kv~W-~QlGi~n~ea~~---~~-~~aG~~vV~nrCi~~E~~~ 135 (140)
T COG1832 85 AAPEVAREALEKGAKVVW-LQLGIRNEEAAE---KA-RDAGLDVVMDRCIMIEHPR 135 (140)
T ss_pred hhHHHHHHHHhhCCCeEE-EecCcCCHHHHH---HH-HHhCcHHHHHhhHHHHHhh
Confidence 999999999999999977 899987666443 33 6788899999999876543
No 14
>KOG1254 consensus ATP-citrate lyase [Energy production and conversion]
Probab=99.72 E-value=6.7e-17 Score=157.94 Aligned_cols=240 Identities=30% Similarity=0.472 Sum_probs=196.6
Q ss_pred CcccccCHHHhhhc-CCCCEEEEecChhhHHHHHHHHHHcC-CcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCC
Q 020101 84 GLPVFNTVAEAKAE-TKANASAIYVPPPFAAAAILEAMEAE-LDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG 161 (331)
Q Consensus 84 G~p~y~sl~dl~~~-~~iDlaii~vp~~~~~~~v~~~~~~G-i~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~G 161 (331)
=+|+|+++++...+ +..|+.+-+.....+.+--.++.+.+ ++.+-++.+|.+|.+..++...+ +..+..++||-+.|
T Consensus 54 ~IPv~~t~~~a~~~hp~~dv~~~faS~rsv~k~~m~~~k~~ki~lvAiiAegvpe~~~~kl~~~a-~~k~~~iiGPaTvg 132 (600)
T KOG1254|consen 54 LIPVEKTMENALVEHPEADVEPWFASTRSVAKPDMLALKRGKIGLVAIIAEGVPEADTRKLRAGA-EVKGVGIIGPATVG 132 (600)
T ss_pred EeechhhHHHHHhcCcccceeechhhhhhhhcchHHHhhcCcceEEEEEecCCcHHHHHHHHhcc-ccccceEEeeeeec
Confidence 36889876655443 45788888888888888888888877 88888899999999888777665 77888999999999
Q ss_pred cccCCCcccc--------cCCCCCCCCCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcC
Q 020101 162 VIKPGECKIG--------IMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIAD 233 (331)
Q Consensus 162 i~~p~~~~~~--------~~~~~~~~~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~D 233 (331)
.+-|.-+.+| .......|+|.+++||.||++..++-+.-.+.=.|....+.+|++.+++.++.|.+..+.+|
T Consensus 133 gVePg~fkignt~g~~dnil~~klyR~Gsv~~vS~sGGmsnE~nn~isrtt~g~~egiaiggd~~pgSTl~dhi~r~q~~ 212 (600)
T KOG1254|consen 133 GVEPGVFKIGNTGGMMDNILNSKLYRPGSVIYVSRSGGMSNELNNIISRTTDGPYEGIAIGGDRYPGSTLIDHIPREQHD 212 (600)
T ss_pred cccCCccccCCCCcchhhhhhhcccCCccEEEEecCCCcchhhhhhhhheeccceeeeeccCCCccCchHhhhhhhhhcc
Confidence 9998722221 11223489999999999999999998777777788999999999999999999999999999
Q ss_pred CCccEEEEEEccCCCcHHHHHHHHHHh---CCCCCEEEEEeCCCCCC---CCCCCCCcccccCCCCCHHHHHHHHHHcCC
Q 020101 234 PQTEGIILIGEIGGTAEEDAAALIKES---GTEKPIVAFIAGLTAPP---GRRMGHAGAIVSGGKGTAQDKIKTLREAGV 307 (331)
Q Consensus 234 p~T~~I~ly~E~~g~~~~~~~~f~~a~---r~~KPVvv~k~Grs~~~---g~~~sHtga~a~~~~g~~~~~~a~~~~aGv 307 (331)
|.++.|++..|..|+.+. .|+++. +-+||+|++..|.+... ..++.|.|+-+........+.+++++.+|+
T Consensus 213 ~~vk~Iv~Lgevgg~~ey---~~~e~~k~g~~tkPlVaw~~gtcA~~F~~evqfghagtaa~~~~eka~akn~al~~ag~ 289 (600)
T KOG1254|consen 213 PLVKFIVVLGEVGGDEEY---TFLEANKEGKITKPLVAWCIGTCADMFPLEVQFGHAGTAAFKNGEKAAAKNQALRDAGA 289 (600)
T ss_pred ChhheEEeehhhccccee---ehhhhhhcCCccCCEEEEecCccccccchhhhccccchhhhcchhhhhhcchhhhhccc
Confidence 999999999998876544 466655 48999999999997651 556899999885444556678999999999
Q ss_pred eEeCCHhHHHHHHHHHHHhc
Q 020101 308 TVVESPAKIGAAMLEVFKQR 327 (331)
Q Consensus 308 ~~v~~~~el~~~~~a~~~~~ 327 (331)
.+.+++++|....+..|+.+
T Consensus 290 ~vpesf~~l~~~i~~~~e~l 309 (600)
T KOG1254|consen 290 TVPESFDALGADIQETYEFL 309 (600)
T ss_pred cCccchhhhhhhhccchhcc
Confidence 99999999999998888754
No 15
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=99.60 E-value=8.4e-15 Score=116.86 Aligned_cols=93 Identities=30% Similarity=0.327 Sum_probs=78.7
Q ss_pred CCCeEEEEEcCCCCCCcHHHHH-HHHcCCe--EEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHH
Q 020101 40 DKNTRVICQGITGKNGTFHTEQ-AIEYGTK--MVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI 116 (331)
Q Consensus 40 ~k~~~VaIvGasgk~G~~~~~~-l~~~g~~--iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v 116 (331)
+|..+|+|+|+ |+.|+.++.. +...||+ .+..+||+..|+++.|+|+|.+++++.+..++|++++++|++.+++++
T Consensus 1 nk~~~v~ivGa-g~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP~~~a~~~~ 79 (96)
T PF02629_consen 1 NKKTNVIIVGA-GNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVPAEAAQEVA 79 (96)
T ss_dssp CTTEEEEEETT-TSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES-HHHHHHHH
T ss_pred CCCCeEEEECC-CCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcCHHHHHHHH
Confidence 46789999999 8899877643 4445765 444699998889999999999999999865699999999999999999
Q ss_pred HHHHHcCCcEEEEecCC
Q 020101 117 LEAMEAELDLVVCITEG 133 (331)
Q Consensus 117 ~~~~~~Gi~~ivi~t~G 133 (331)
+++++.|||.+|+||+|
T Consensus 80 ~~~~~~gIk~i~nft~~ 96 (96)
T PF02629_consen 80 DELVEAGIKGIVNFTPG 96 (96)
T ss_dssp HHHHHTT-SEEEEESSS
T ss_pred HHHHHcCCCEEEEeCCC
Confidence 99999999999999986
No 16
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=99.51 E-value=7.8e-14 Score=116.43 Aligned_cols=110 Identities=25% Similarity=0.371 Sum_probs=88.0
Q ss_pred eEEEEEcCCCCCCcHHHHHHHH-cCCeEEEEeCCCC---CCce--------ecCcccccCHHHhhhcCCCCEEEEecChh
Q 020101 43 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKK---GGTE--------HLGLPVFNTVAEAKAETKANASAIYVPPP 110 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~-~g~~iv~~VnP~~---~g~~--------i~G~p~y~sl~dl~~~~~iDlaii~vp~~ 110 (331)
+||+|+|++||||+.+.+.+.+ .++++++.++++. .|+. ..|++++.+++++.+ .+|++|+|+.|+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~--~~DVvIDfT~p~ 78 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLE--EADVVIDFTNPD 78 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTT--H-SEEEEES-HH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcc--cCCEEEEcCChH
Confidence 5899999999999999999988 5899998888775 2332 358899999999998 599999999999
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcE-EEccC
Q 020101 111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPN 158 (331)
Q Consensus 111 ~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~-viGPn 158 (331)
.+.+.++.|+++|++. |+.|+|+++++..+|.+++ ++ +. ++.||
T Consensus 79 ~~~~~~~~~~~~g~~~-ViGTTG~~~~~~~~l~~~a-~~--~~vl~a~N 123 (124)
T PF01113_consen 79 AVYDNLEYALKHGVPL-VIGTTGFSDEQIDELEELA-KK--IPVLIAPN 123 (124)
T ss_dssp HHHHHHHHHHHHT-EE-EEE-SSSHHHHHHHHHHHT-TT--SEEEE-SS
T ss_pred HhHHHHHHHHhCCCCE-EEECCCCCHHHHHHHHHHh-cc--CCEEEeCC
Confidence 9999999999999997 6699999999988888876 44 44 66777
No 17
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=99.40 E-value=4.6e-13 Score=117.56 Aligned_cols=105 Identities=23% Similarity=0.319 Sum_probs=90.0
Q ss_pred CCCCCCCCccccc-----CCCCeEEEEEcCCCCCCcHHHH--HHHHcCCeEEEE--eCCCCCCceecCccccc--CHHHh
Q 020101 26 SFTTAPPPAPAVF-----VDKNTRVICQGITGKNGTFHTE--QAIEYGTKMVGG--VTPKKGGTEHLGLPVFN--TVAEA 94 (331)
Q Consensus 26 ~~~~~~~~l~~ll-----~~k~~~VaIvGasgk~G~~~~~--~l~~~g~~iv~~--VnP~~~g~~i~G~p~y~--sl~dl 94 (331)
+|+..+ |...| .++.++|+|||+ |++|++++. +..++++++++. +||+..|.++.++|+|. +++..
T Consensus 65 GYnV~~--L~~ff~~~Lg~~~~tnviiVG~-GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~ 141 (211)
T COG2344 65 GYNVKY--LRDFFDDLLGQDKTTNVIIVGV-GNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKF 141 (211)
T ss_pred CccHHH--HHHHHHHHhCCCcceeEEEEcc-ChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHH
Confidence 556655 55544 678999999999 999999875 466789998876 78888899999999997 57777
Q ss_pred hhcCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCC
Q 020101 95 KAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEG 133 (331)
Q Consensus 95 ~~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G 133 (331)
.++.++|++|+++|.+.++++++.++++|||+||+||+.
T Consensus 142 v~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVkGIlNFtPv 180 (211)
T COG2344 142 VKKNDVEIAILTVPAEHAQEVADRLVKAGVKGILNFTPV 180 (211)
T ss_pred HHhcCccEEEEEccHHHHHHHHHHHHHcCCceEEeccce
Confidence 777789999999999999999999999999999999985
No 18
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=99.40 E-value=2.9e-12 Score=120.36 Aligned_cols=117 Identities=21% Similarity=0.321 Sum_probs=95.2
Q ss_pred eEEEEEcCCCCCCcHHHHHHHH-cCCeEEEEeC-CCC--CCce---e-----cCcccccCHHHhhhcCCCCEEEEecChh
Q 020101 43 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVT-PKK--GGTE---H-----LGLPVFNTVAEAKAETKANASAIYVPPP 110 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~-~g~~iv~~Vn-P~~--~g~~---i-----~G~p~y~sl~dl~~~~~iDlaii~vp~~ 110 (331)
++|+|+|++|+||+.+++.+.+ .++++++.++ +.. .++. . .|+++|.+++++.. .+|++|+|+||+
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~--~~DvVIdfT~p~ 79 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVET--DPDVLIDFTTPE 79 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcC--CCCEEEECCChH
Confidence 6899999889999999999887 4899998888 322 1111 1 46889999999832 699999999999
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcE-EEccCC-CCcc
Q 020101 111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPNC-PGVI 163 (331)
Q Consensus 111 ~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~-viGPnc-~Gi~ 163 (331)
.+.+.++.|+++|++. ++.|+|+++++.++|.++| +++|+. +++||. +|+.
T Consensus 80 ~~~~~~~~al~~g~~v-Vigttg~~~e~~~~l~~aA-~~~g~~v~~a~NfSlGv~ 132 (266)
T TIGR00036 80 GVLNHLKFALEHGVRL-VVGTTGFSEEDKQELADLA-EKAGIAAVIAPNFSIGVN 132 (266)
T ss_pred HHHHHHHHHHHCCCCE-EEECCCCCHHHHHHHHHHH-hcCCccEEEECcccHHHH
Confidence 9999999999999987 5688999999999999887 777776 667885 4443
No 19
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=99.33 E-value=9.8e-12 Score=115.06 Aligned_cols=116 Identities=22% Similarity=0.324 Sum_probs=94.4
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCC-----------CceecCcccccCHHHhhhcCCCCEEEEecCh
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKG-----------GTEHLGLPVFNTVAEAKAETKANASAIYVPP 109 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~-----------g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~ 109 (331)
.+||+|+||+||||+.+.+.+.+. ++++++.++.... |....|+|+.+++..... ++|++|+||.|
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~--~~DV~IDFT~P 79 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKA--DADVLIDFTTP 79 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhccc--CCCEEEECCCc
Confidence 578999999999999999998875 6899988775542 113568899998666555 89999999999
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCC-CCc
Q 020101 110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNC-PGV 162 (331)
Q Consensus 110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc-~Gi 162 (331)
+.+.+.++.|.++|++. |+.|+||++++.++|.+++ ++.+ -++.||. +|+
T Consensus 80 ~~~~~~l~~~~~~~~~l-VIGTTGf~~e~~~~l~~~a-~~v~-vv~a~NfSiGv 130 (266)
T COG0289 80 EATLENLEFALEHGKPL-VIGTTGFTEEQLEKLREAA-EKVP-VVIAPNFSLGV 130 (266)
T ss_pred hhhHHHHHHHHHcCCCe-EEECCCCCHHHHHHHHHHH-hhCC-EEEeccchHHH
Confidence 99999999999999887 6699999999999998887 5532 3667774 443
No 20
>PLN02775 Probable dihydrodipicolinate reductase
Probab=99.30 E-value=2.2e-11 Score=114.74 Aligned_cols=118 Identities=17% Similarity=0.190 Sum_probs=96.0
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceec------Ccccc--cCHHHhhhcC---CCC-EEEEecCh
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHL------GLPVF--NTVAEAKAET---KAN-ASAIYVPP 109 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~------G~p~y--~sl~dl~~~~---~iD-laii~vp~ 109 (331)
.++|+|.|++||||+.+.+.+.+.++++++.++++..|+... ++++| .+++++..+. .+| ++|+|+.|
T Consensus 11 ~i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~~~~~VvIDFT~P 90 (286)
T PLN02775 11 AIPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKAEYPNLIVVDYTLP 90 (286)
T ss_pred CCeEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhhccCCCEEEEECCCh
Confidence 478999999999999999988888999998899887654322 68899 8899988543 689 89999999
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcE-EEccCC-CCccc
Q 020101 110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPNC-PGVIK 164 (331)
Q Consensus 110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~-viGPnc-~Gi~~ 164 (331)
+.+.+.++.|+++|++. |+.|+|+++++..++ + ++.++. ++.||. +|+..
T Consensus 91 ~a~~~~~~~~~~~g~~~-VvGTTG~~~e~l~~~---~-~~~~i~vv~apNfSiGv~l 142 (286)
T PLN02775 91 DAVNDNAELYCKNGLPF-VMGTTGGDRDRLLKD---V-EESGVYAVIAPQMGKQVVA 142 (286)
T ss_pred HHHHHHHHHHHHCCCCE-EEECCCCCHHHHHHH---H-hcCCccEEEECcccHHHHH
Confidence 99999999999999997 669999998865544 3 344554 778886 45443
No 21
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=99.24 E-value=7e-11 Score=110.44 Aligned_cols=112 Identities=19% Similarity=0.251 Sum_probs=91.0
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCc---eecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHH
Q 020101 43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE 118 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~ 118 (331)
++|+|+|++|+||+.+++.+.+. ++++++.+++..... ...|++.|.+++++.+ ++|++++|+||+.+.++++.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~--~~DvVid~t~p~~~~~~~~~ 79 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLA--DADVLIDFTTPEATLENLEF 79 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhcc--CCCEEEECCCHHHHHHHHHH
Confidence 68999999999999999988874 789998887664211 2346778999999886 79999999999999999999
Q ss_pred HHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCC
Q 020101 119 AMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNC 159 (331)
Q Consensus 119 ~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc 159 (331)
|+++|++.+ +.|+|+++++.++|.+.+ ++.+ .++.||+
T Consensus 80 al~~G~~vv-igttG~s~~~~~~l~~aa-~~~~-v~~s~n~ 117 (257)
T PRK00048 80 ALEHGKPLV-IGTTGFTEEQLAELEEAA-KKIP-VVIAPNF 117 (257)
T ss_pred HHHcCCCEE-EECCCCCHHHHHHHHHHh-cCCC-EEEECcc
Confidence 999999985 579999999988888844 4444 3555664
No 22
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=99.16 E-value=1.3e-10 Score=95.06 Aligned_cols=108 Identities=21% Similarity=0.302 Sum_probs=88.0
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHc--CCeEEEEeCCCCCCc----eecCcccccCHHHhhhcCCCCEEEEecChhhHHHHH
Q 020101 43 TRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGGT----EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI 116 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~--g~~iv~~VnP~~~g~----~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v 116 (331)
++|+|||+ |++|+.+.+.+.+. ++++++.+||..... +..|+++|++++++.+++++|++++++|+..+.+.+
T Consensus 1 i~v~iiG~-G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~ 79 (120)
T PF01408_consen 1 IRVGIIGA-GSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIA 79 (120)
T ss_dssp EEEEEEST-SHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHH
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHH
Confidence 57899999 99999998887765 678998899875211 247999999999999877899999999999999999
Q ss_pred HHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcE
Q 020101 117 LEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR 153 (331)
Q Consensus 117 ~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~ 153 (331)
++|+++|++. ++=-| ..+.++.++|.+.+ +++|..
T Consensus 80 ~~~l~~g~~v-~~EKP~~~~~~~~~~l~~~a-~~~~~~ 115 (120)
T PF01408_consen 80 KKALEAGKHV-LVEKPLALTLEEAEELVEAA-KEKGVK 115 (120)
T ss_dssp HHHHHTTSEE-EEESSSSSSHHHHHHHHHHH-HHHTSC
T ss_pred HHHHHcCCEE-EEEcCCcCCHHHHHHHHHHH-HHhCCE
Confidence 9999999965 44333 45678888998888 666654
No 23
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=99.14 E-value=2.9e-10 Score=106.67 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=93.9
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCCeEEEE-eCCCCCCce---ec--Cccc------ccCHHHhhhcCCCC-EEEEecCh
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGG-VTPKKGGTE---HL--GLPV------FNTVAEAKAETKAN-ASAIYVPP 109 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~-VnP~~~g~~---i~--G~p~------y~sl~dl~~~~~iD-laii~vp~ 109 (331)
++|+|.||+||||+.+.+.+.+.++++++. ++++..++. +. ++|+ +.+++++.+. .+| ++|+||.|
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~-~~d~VvIDFT~P 79 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADAAGLEIVPTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFAK-YPELICIDYTHP 79 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhcCCCEEEeeEccccccccchhhhcccceeeeccccccccHHHHHhh-cCCEEEEECCCh
Confidence 478999999999999999988889999976 888764432 22 6788 8899999862 489 99999999
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCc-EEEccCC-CCccc
Q 020101 110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKT-RLVGPNC-PGVIK 164 (331)
Q Consensus 110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi-~viGPnc-~Gi~~ 164 (331)
+.+.+.++.|.++|++. |+.|+|+++++..++.+. .++ .++.||. +|+..
T Consensus 80 ~~~~~n~~~~~~~gv~~-ViGTTG~~~~~~~~l~~~----~~i~~l~apNfSiGv~l 131 (275)
T TIGR02130 80 SAVNDNAAFYGKHGIPF-VMGTTGGDREALAKLVAD----AKHPAVIAPNMAKQIVA 131 (275)
T ss_pred HHHHHHHHHHHHCCCCE-EEcCCCCCHHHHHHHHHh----cCCCEEEECcccHHHHH
Confidence 99999999999999997 669999999988877543 234 4778885 55543
No 24
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=98.93 E-value=7.6e-09 Score=89.45 Aligned_cols=122 Identities=34% Similarity=0.453 Sum_probs=97.9
Q ss_pred EecChHHHHHHHHHHHhC--------------CCCceEEEecCCCCCC---------CCCHHHHHHHhhcCCCccEEEEE
Q 020101 186 VSRSGTLTYEAVFQTTAV--------------GLGQSTCVGIGGDPFN---------GTNFVDCVTKFIADPQTEGIILI 242 (331)
Q Consensus 186 isQSG~~~~~~~~~~~~~--------------g~g~s~~vs~Gn~~~~---------~v~~~d~l~~l~~Dp~T~~I~ly 242 (331)
++.+|+|+.+.++...+. +.+.+.++.+|...+. .....|.|+.+.+||+|++|++-
T Consensus 1 l~~GgtL~~Ea~~~i~~~~~~~~sn~~~~~~~g~~~~~~lDlGgd~~t~GrphPmid~~~~~~~l~~~~~Dp~v~vIlvd 80 (153)
T PF00549_consen 1 LYNGGTLAMEAMDLISDALGDVYSNFKLANPLGGGPANFLDLGGDAFTQGRPHPMIDPSTRNEALEIEAADPEVKVILVD 80 (153)
T ss_dssp EESSHHHHHHHHHHHHHTTT------GCCEEETCTEEEEEECTSSSSHTTS--TTT-SSHHHHHHHHHHTSTTESEEEEE
T ss_pred CcCcHHHHHHHHHHHHHhhccccccccccccCCCCceeEEEeCCCcccccCcCCCcCHHHHHHHHHHHhcCCCccEEEEE
Confidence 578999999999999999 9999999999999865 67899999999999999999999
Q ss_pred EccC-CCcHHHHHHHHHHhC------CCCCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhH
Q 020101 243 GEIG-GTAEEDAAALIKESG------TEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAK 315 (331)
Q Consensus 243 ~E~~-g~~~~~~~~f~~a~r------~~KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~e 315 (331)
+|.+ |..+..+..++++.+ +.||||++..|+....+.+..| ..+|+++|+..+.+-++
T Consensus 81 ~~~G~g~~~~~A~~l~~a~~~~~~~~~~~pvVa~v~GT~~dpq~~~~~---------------~~~L~~~G~~v~~s~~~ 145 (153)
T PF00549_consen 81 IVGGIGSCEDPAAGLIPAIKEAKAEGRKKPVVARVCGTNADPQGRMGQ---------------AGALEDAGVIVAESNAQ 145 (153)
T ss_dssp EESSSSSHHHHHHHHHHHHSHCTHTTT-SEEEEEEESTTCHTTSCHHH---------------HHHHHCTTCSCHHHHHH
T ss_pred eccccCchHHHHHHHHHHHHhccccCCCCcEEEEeeeecCCCCCcHHH---------------HHHHHhCCCcccccHHH
Confidence 9986 888888888888875 4789999999987763332333 34566677766666666
Q ss_pred HHHHHHH
Q 020101 316 IGAAMLE 322 (331)
Q Consensus 316 l~~~~~a 322 (331)
-..++.+
T Consensus 146 A~~~A~a 152 (153)
T PF00549_consen 146 AARAAGA 152 (153)
T ss_dssp HHHHHTH
T ss_pred HHHHcCC
Confidence 5555443
No 25
>PRK11579 putative oxidoreductase; Provisional
Probab=98.86 E-value=1.9e-08 Score=97.61 Aligned_cols=116 Identities=16% Similarity=0.088 Sum_probs=88.2
Q ss_pred CCeEEEEEcCCCCCCc-HHHHHHHHc-CCeEEEEeCCCCCC--ceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHH
Q 020101 41 KNTRVICQGITGKNGT-FHTEQAIEY-GTKMVGGVTPKKGG--TEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI 116 (331)
Q Consensus 41 k~~~VaIvGasgk~G~-~~~~~l~~~-g~~iv~~VnP~~~g--~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v 116 (331)
+.++|+|||+ |.+|+ .+.+.+... ++++++.++++... +...+.++|.+++++.++.++|+++|+||+..+.+.+
T Consensus 3 ~~irvgiiG~-G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~ 81 (346)
T PRK11579 3 DKIRVGLIGY-GYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLA 81 (346)
T ss_pred CcceEEEECC-CHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHH
Confidence 3589999999 88987 466776664 78999888876521 1233677899999999866899999999999999999
Q ss_pred HHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcE-EEccC
Q 020101 117 LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPN 158 (331)
Q Consensus 117 ~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~-viGPn 158 (331)
.+|+++|.+.++=-.-..+.++..+|.++| +++|+. .++.|
T Consensus 82 ~~al~aGkhVl~EKPla~t~~ea~~l~~~a-~~~g~~l~v~~~ 123 (346)
T PRK11579 82 KAALEAGKHVVVDKPFTVTLSQARELDALA-KSAGRVLSVFHN 123 (346)
T ss_pred HHHHHCCCeEEEeCCCCCCHHHHHHHHHHH-HHhCCEEEEEee
Confidence 999999988643222245667788888888 677765 34433
No 26
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=98.80 E-value=2.4e-08 Score=95.78 Aligned_cols=117 Identities=21% Similarity=0.267 Sum_probs=88.4
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcC--CeEEEEeCCCCCC-c---eecCcc-cccCHHHhhhcCCCCEEEEecChhhHH
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYG--TKMVGGVTPKKGG-T---EHLGLP-VFNTVAEAKAETKANASAIYVPPPFAA 113 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g--~~iv~~VnP~~~g-~---~i~G~p-~y~sl~dl~~~~~iDlaii~vp~~~~~ 113 (331)
+.++|+|||+.+-.++.+...+.+.+ +++++.++++... + +..|++ +|.+++++.++.++|+++|++|+..+.
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~ 81 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHA 81 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhH
Confidence 56899999993344566888888764 5888888887621 1 246775 999999999877799999999999999
Q ss_pred HHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcE-EEccC
Q 020101 114 AAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPN 158 (331)
Q Consensus 114 ~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~-viGPn 158 (331)
+++.+|+++|++.++=-.-..+.++.++|.++| +++|+. .+|.|
T Consensus 82 e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a-~~~~~~l~v~~~ 126 (342)
T COG0673 82 ELALAALEAGKHVLCEKPLALTLEEAEELVELA-RKAGVKLMVGFN 126 (342)
T ss_pred HHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHH-HHcCCceeeehh
Confidence 999999999998633111135567788888888 666754 55655
No 27
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=98.75 E-value=4.7e-08 Score=91.86 Aligned_cols=116 Identities=15% Similarity=0.152 Sum_probs=86.0
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCc---ee--cCcccccCHHHhhhcCCCCEEEEecChhhHHHHH
Q 020101 43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT---EH--LGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI 116 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~---~i--~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v 116 (331)
+||+|+|+ |++|+.+++.+.+. +.++++.+++....+ .. .+.++|.+++++ . .++|++++|+|++.+.+.+
T Consensus 2 ~rVgIiG~-G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l-~-~~~DvVve~t~~~~~~e~~ 78 (265)
T PRK13303 2 MKVAMIGF-GAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDAL-P-QRPDLVVECAGHAALKEHV 78 (265)
T ss_pred cEEEEECC-CHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHh-c-cCCCEEEECCCHHHHHHHH
Confidence 58999999 99999999998875 677776654432111 11 267889999998 3 3799999999999999999
Q ss_pred HHHHHcCCcEEEEecCC-CChhH-HHHHHHHHhccCCcE-EEccCCCCcc
Q 020101 117 LEAMEAELDLVVCITEG-IPQHD-MVRVKAALNNQSKTR-LVGPNCPGVI 163 (331)
Q Consensus 117 ~~~~~~Gi~~ivi~t~G-~~e~~-~~~l~~~a~~~~gi~-viGPnc~Gi~ 163 (331)
.+++++|++. ++.++| +++.+ ..+|.+.| +++|.+ ++-|.+.|.+
T Consensus 79 ~~aL~aGk~V-vi~s~~Al~d~~~~~~L~~~A-~~~g~~l~v~sga~gg~ 126 (265)
T PRK13303 79 VPILKAGIDC-AVISVGALADEALRERLEQAA-EAGGARLHLLSGAIGGI 126 (265)
T ss_pred HHHHHcCCCE-EEeChHHhcCHHHHHHHHHHH-HHCCCEEEEeChHhhCH
Confidence 9999999987 556777 55443 46677777 677766 4444444443
No 28
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.71 E-value=7.2e-08 Score=90.55 Aligned_cols=108 Identities=7% Similarity=0.106 Sum_probs=85.4
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHc--CCeEEEEeCCCCCC-c---eecCcccccCHHHhhhcCCCCEEEEecChhhHHHHH
Q 020101 43 TRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI 116 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~--g~~iv~~VnP~~~g-~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v 116 (331)
++|+|||+ |++|+.+++.+.+. ++++++.+|++... + +..|.+.|.+++++.. ++|++++++|++.+.+.+
T Consensus 2 mrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~--~~DvVvi~a~~~~~~~~~ 78 (265)
T PRK13304 2 LKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVE--DVDLVVECASVNAVEEVV 78 (265)
T ss_pred CEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhc--CCCEEEEcCChHHHHHHH
Confidence 57999999 99999999988875 57888888886521 1 1346788999999985 799999999999999999
Q ss_pred HHHHHcCCcEEEEecCCC--ChhHHHHHHHHHhccCCcEEE
Q 020101 117 LEAMEAELDLVVCITEGI--PQHDMVRVKAALNNQSKTRLV 155 (331)
Q Consensus 117 ~~~~~~Gi~~ivi~t~G~--~e~~~~~l~~~a~~~~gi~vi 155 (331)
++++++|.+. ++.+.|. .++..++|.+.| +++|.++.
T Consensus 79 ~~al~~Gk~V-vv~s~gAl~d~~~~~~L~~aA-~~~g~~l~ 117 (265)
T PRK13304 79 PKSLENGKDV-IIMSVGALADKELFLKLYKLA-KENNCKIY 117 (265)
T ss_pred HHHHHcCCCE-EEEchHHhcCHHHHHHHHHHH-HHcCCEEE
Confidence 9999999886 5567663 344566788877 77887654
No 29
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=98.67 E-value=5.6e-08 Score=88.35 Aligned_cols=114 Identities=18% Similarity=0.223 Sum_probs=84.2
Q ss_pred ccccCCCCCCCCCC--CCccccc-CCCCeEEEEEcCCCCCCcHHHHHH--HHcCCeEEEEeCC--CCCCceecCccccc-
Q 020101 18 EICCGQSRSFTTAP--PPAPAVF-VDKNTRVICQGITGKNGTFHTEQA--IEYGTKMVGGVTP--KKGGTEHLGLPVFN- 89 (331)
Q Consensus 18 ~~~~~~~~~~~~~~--~~l~~ll-~~k~~~VaIvGasgk~G~~~~~~l--~~~g~~iv~~VnP--~~~g~~i~G~p~y~- 89 (331)
|.---+.-+|+..+ ..++.+| ....++|+|+|+ |++|+.+.+.+ .+.|+++++.+|+ ...+..+.|.|++.
T Consensus 57 ~~~G~~~~gy~v~~l~~~~~~~l~~~~~~rV~IIGa-G~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g~~v~~~ 135 (213)
T PRK05472 57 GEFGKRGVGYNVEELLEFIEKILGLDRTWNVALVGA-GNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGGIPVYHI 135 (213)
T ss_pred HhcCCCCCCeeHHHHHHHHHHHhCCCCCcEEEEECC-CHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCCeEEcCH
Confidence 43334455564331 2255666 445678999999 99999888753 2458999987765 34445567777764
Q ss_pred -CHHHhhhcCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 020101 90 -TVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE 132 (331)
Q Consensus 90 -sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~ 132 (331)
+++++..++++|.+++++|...+.++++.+.++|++.+|++++
T Consensus 136 ~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p 179 (213)
T PRK05472 136 DELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAP 179 (213)
T ss_pred HHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCc
Confidence 5677766567999999999999999999999999999999876
No 30
>PRK10206 putative oxidoreductase; Provisional
Probab=98.65 E-value=1.4e-07 Score=91.79 Aligned_cols=111 Identities=9% Similarity=-0.001 Sum_probs=82.6
Q ss_pred CeEEEEEcCCCCCC-cHHHHHHHH--cCCeEEEEeCCCCCCc----eecCcccccCHHHhhhcCCCCEEEEecChhhHHH
Q 020101 42 NTRVICQGITGKNG-TFHTEQAIE--YGTKMVGGVTPKKGGT----EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAA 114 (331)
Q Consensus 42 ~~~VaIvGasgk~G-~~~~~~l~~--~g~~iv~~VnP~~~g~----~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~ 114 (331)
++||+|||+ |+++ +.++..+.. .++++++.+++..... ...+.+.|.+++++.++.++|+++|++|+..+.+
T Consensus 1 ~irvgiiG~-G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~ 79 (344)
T PRK10206 1 VINCAFIGF-GKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFE 79 (344)
T ss_pred CeEEEEECC-CHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHH
Confidence 368999999 7754 456666544 3688988887754111 1234789999999998778999999999999999
Q ss_pred HHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEE
Q 020101 115 AILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRL 154 (331)
Q Consensus 115 ~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~v 154 (331)
.+.+|+++|++.++=-.-..+.++.++|.+.+ +++|+.+
T Consensus 80 ~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a-~~~~~~l 118 (344)
T PRK10206 80 YAKRALEAGKNVLVEKPFTPTLAEAKELFALA-KSKGLTV 118 (344)
T ss_pred HHHHHHHcCCcEEEecCCcCCHHHHHHHHHHH-HHhCCEE
Confidence 99999999987633111134567788888888 7888664
No 31
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.64 E-value=1.6e-07 Score=88.63 Aligned_cols=113 Identities=13% Similarity=0.102 Sum_probs=85.4
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHH--cCCeEEEEeCCCCCCc----eecC-cccccCHHHhhhcCCCCEEEEecChhhHH
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIE--YGTKMVGGVTPKKGGT----EHLG-LPVFNTVAEAKAETKANASAIYVPPPFAA 113 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~--~g~~iv~~VnP~~~g~----~i~G-~p~y~sl~dl~~~~~iDlaii~vp~~~~~ 113 (331)
+.++|+|||+ |++|+.+++.+.+ .++++++..++..... +..| .+.|.+++++.. ++|++++++|++.+.
T Consensus 5 ~~irIGIIG~-G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~--~~D~Vvi~tp~~~h~ 81 (271)
T PRK13302 5 PELRVAIAGL-GAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLAT--HADIVVEAAPASVLR 81 (271)
T ss_pred CeeEEEEECc-cHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhc--CCCEEEECCCcHHHH
Confidence 4588999999 9999999999886 3788887777764211 1234 367889999986 799999999999999
Q ss_pred HHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEE-EccCC
Q 020101 114 AAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRL-VGPNC 159 (331)
Q Consensus 114 ~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~v-iGPnc 159 (331)
+.+..++++|.+. ++.+.|- ..+.++|.+.+ +++|.++ +++..
T Consensus 82 e~~~~aL~aGk~V-i~~s~ga-l~~~~~L~~~A-~~~g~~l~v~sGa 125 (271)
T PRK13302 82 AIVEPVLAAGKKA-IVLSVGA-LLRNEDLIDLA-RQNGGQIIVPTGA 125 (271)
T ss_pred HHHHHHHHcCCcE-EEecchh-HHhHHHHHHHH-HHcCCEEEEcchH
Confidence 9999999999876 4455552 23456777777 7788775 54443
No 32
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=98.54 E-value=2.8e-07 Score=89.73 Aligned_cols=108 Identities=13% Similarity=0.191 Sum_probs=83.8
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHc--CCeEEEEeCCCCCC-c---eecCcccccCHHHhhhcCCCCEEEEec----Chh
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYV----PPP 110 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~--g~~iv~~VnP~~~g-~---~i~G~p~y~sl~dl~~~~~iDlaii~v----p~~ 110 (331)
+.++|+|||+ .+|+.+++.+.+. ++++++.+++.... + +-+|++.|.+++|+++ ++|+++|++ |+.
T Consensus 2 ~~~rVgViG~--~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~--d~Di~~V~ipt~~P~~ 77 (343)
T TIGR01761 2 DVQSVVVCGT--RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPD--DIDIACVVVRSAIVGG 77 (343)
T ss_pred CCcEEEEEeH--HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhc--CCCEEEEEeCCCCCCc
Confidence 4688999998 4899999888874 58999888887521 1 2468999999999997 577777766 457
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEE
Q 020101 111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155 (331)
Q Consensus 111 ~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~vi 155 (331)
.+.+++.+|+++|++. ++ ---+..++.+++.+.| +++|+.+.
T Consensus 78 ~H~e~a~~aL~aGkHV-L~-EKPla~~Ea~el~~~A-~~~g~~l~ 119 (343)
T TIGR01761 78 QGSALARALLARGIHV-LQ-EHPLHPRDIQDLLRLA-ERQGRRYL 119 (343)
T ss_pred cHHHHHHHHHhCCCeE-EE-cCCCCHHHHHHHHHHH-HHcCCEEE
Confidence 9999999999999886 43 2235567888898888 78887655
No 33
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=98.36 E-value=1.5e-06 Score=83.70 Aligned_cols=111 Identities=11% Similarity=0.090 Sum_probs=80.4
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCceecCccccc--CHHHhhhcCCCCEEEEecChhhHHHHHHH
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHLGLPVFN--TVAEAKAETKANASAIYVPPPFAAAAILE 118 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~~i~G~p~y~--sl~dl~~~~~iDlaii~vp~~~~~~~v~~ 118 (331)
.++|+|+|. |++|+.+.+.+.+. ++++++.++++..+..-.+.++|. +.+++.. ++|++++|+|...+.+.+..
T Consensus 3 kIRVgIVG~-GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~--~iDVViIctPs~th~~~~~~ 79 (324)
T TIGR01921 3 KIRAAIVGY-GNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLD--DVDVLILCMGSATDIPEQAP 79 (324)
T ss_pred CcEEEEEee-cHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhcc--CCCEEEEcCCCccCHHHHHH
Confidence 589999999 99999999988775 899998878763111112344444 5555554 79999999999999999999
Q ss_pred HHHcCCcEEEEecCCCC-hhHHHHHHHHHhcc-CCcEEEc
Q 020101 119 AMEAELDLVVCITEGIP-QHDMVRVKAALNNQ-SKTRLVG 156 (331)
Q Consensus 119 ~~~~Gi~~ivi~t~G~~-e~~~~~l~~~a~~~-~gi~viG 156 (331)
++++|++.|-.+.+... .+..+++.++| ++ .++.+++
T Consensus 80 ~L~aG~NVV~s~~~h~~~p~~~~~ld~AA-k~~g~vsvi~ 118 (324)
T TIGR01921 80 YFAQFANTVDSFDNHRDIPRHRQVMDAAA-KAAGNVSVIS 118 (324)
T ss_pred HHHcCCCEEECCCcccCCHHHHHHHHHHH-HHcCCEEEEE
Confidence 99999998554433322 23345566666 54 6788887
No 34
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=98.35 E-value=7.9e-05 Score=75.17 Aligned_cols=255 Identities=15% Similarity=0.130 Sum_probs=151.6
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecC----hhhHHHHH
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVP----PPFAAAAI 116 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp----~~~~~~~v 116 (331)
+.=+|++|.=||.++..++..+.+.|+.+-..|+-.. +. .+..-+-++-+.++++.++++++.- +....+.+
T Consensus 149 ~~G~valvsqSG~~~~~~~~~~~~~g~g~s~~vs~Gn--~~--d~~~~d~l~~l~~D~~t~~I~ly~E~~~~~~~f~~aa 224 (447)
T TIGR02717 149 KKGGIAFISQSGALLTALLDWAEKNGVGFSYFVSLGN--KA--DIDESDLLEYLADDPDTKVILLYLEGIKDGRKFLKTA 224 (447)
T ss_pred CCCCEEEEechHHHHHHHHHHHHhcCCCcceEEECCc--hh--hCCHHHHHHHHhhCCCCCEEEEEecCCCCHHHHHHHH
Confidence 3345788998888888888877776554333444433 11 1111111233333456888888865 34555666
Q ss_pred HHHHHcCCcEEEEecCCCChhHH-------------HHHHHHHhccCCcEEEccCCCCcccCCCcccccCCCCCCCCCCE
Q 020101 117 LEAMEAELDLVVCITEGIPQHDM-------------VRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRI 183 (331)
Q Consensus 117 ~~~~~~Gi~~ivi~t~G~~e~~~-------------~~l~~~a~~~~gi~viGPnc~Gi~~p~~~~~~~~~~~~~~~G~v 183 (331)
+.+.+ +.+ |+++-.|-++... .++.+.+-++.|+..+ .+.--+++.. ..+.....++-.+|
T Consensus 225 ~~a~~-~KP-Vv~~k~Grs~~g~~aa~sHtgalag~~~~~~a~~~~~Gv~~~-~~~~el~~~~---~~l~~~~~~~g~rv 298 (447)
T TIGR02717 225 REISK-KKP-IVVLKSGTSEAGAKAASSHTGALAGSDEAYDAAFKQAGVIRA-DSIEELFDLA---RLLSNQPLPKGNRV 298 (447)
T ss_pred HHHcC-CCC-EEEEecCCChhhhhhhhhccccccChHHHHHHHHHHCCeEEe-CCHHHHHHHH---HHHhcCCCCCCCeE
Confidence 66643 544 5667777765432 1233333367775544 1211122210 11111122445579
Q ss_pred EEEecChHHHHHHHHHHHhCCCCceE---------------EEecCCCCC-----CCCCHHHHHHHhhcCCCccEEEEEE
Q 020101 184 GIVSRSGTLTYEAVFQTTAVGLGQST---------------CVGIGGDPF-----NGTNFVDCVTKFIADPQTEGIILIG 243 (331)
Q Consensus 184 alisQSG~~~~~~~~~~~~~g~g~s~---------------~vs~Gn~~~-----~~v~~~d~l~~l~~Dp~T~~I~ly~ 243 (331)
++||-||+.+..+.|.+.+.|+.+-. ..+.+|-.| ..-.+.+.++.+.+||++.+|++.+
T Consensus 299 aivs~sGG~g~l~aD~~~~~Gl~lp~ls~~t~~~L~~~lp~~~~~~NPlDl~~~~~~~~~~~al~~l~~dp~vd~Vlv~~ 378 (447)
T TIGR02717 299 AIITNAGGPGVIATDACEENGLELAELSEATKNKLRNILPPEASIKNPVDVLGDATPERYAKALKTVAEDENVDGVVVVL 378 (447)
T ss_pred EEEECCchHHHHHHHHHHHcCCCcCCCCHHHHHHHHHhCccccccCCCEecCCCCCHHHHHHHHHHHHcCCCCCEEEEEc
Confidence 99999999999999999999887662 345566431 1224678899999999999998664
Q ss_pred ccCC--CcHHHHHHHHHHhC-C-CCCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHH
Q 020101 244 EIGG--TAEEDAAALIKESG-T-EKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAA 319 (331)
Q Consensus 244 E~~g--~~~~~~~~f~~a~r-~-~KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~~ 319 (331)
-..+ ....-.+.+.++.+ . +|||++.-.|- ...+.....|+++|+...+++++-..+
T Consensus 379 ~~~~~~~~~~~a~~l~~~~~~~~~KPvv~~~~gg-------------------~~~~~~~~~L~~~Gip~f~~p~~A~~a 439 (447)
T TIGR02717 379 TPTAMTDPEEVAKGIIEGAKKSNEKPVVAGFMGG-------------------KSVDPAKRILEENGIPNYTFPERAVKA 439 (447)
T ss_pred cCCccCCHHHHHHHHHHHHHhcCCCcEEEEecCC-------------------ccHHHHHHHHHhCCCCccCCHHHHHHH
Confidence 3211 11223344444444 3 89997765331 123445677899999999999998887
Q ss_pred HHHHH
Q 020101 320 MLEVF 324 (331)
Q Consensus 320 ~~a~~ 324 (331)
+..++
T Consensus 440 l~~~~ 444 (447)
T TIGR02717 440 LSALY 444 (447)
T ss_pred HHHHH
Confidence 77654
No 35
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=98.17 E-value=7.3e-06 Score=89.58 Aligned_cols=119 Identities=13% Similarity=0.133 Sum_probs=85.3
Q ss_pred CCCeEEEEEcCCCCCCcHHHHHHHHc-CCe------------EEEEeCCCCCC-ce----ecC---ccc-ccCHHHhhhc
Q 020101 40 DKNTRVICQGITGKNGTFHTEQAIEY-GTK------------MVGGVTPKKGG-TE----HLG---LPV-FNTVAEAKAE 97 (331)
Q Consensus 40 ~k~~~VaIvGasgk~G~~~~~~l~~~-g~~------------iv~~VnP~~~g-~~----i~G---~p~-y~sl~dl~~~ 97 (331)
.+..+|+|+|| |++|+.+++.|.+. +++ ++...|+.... +. ..+ ++. +.+.+++.+.
T Consensus 567 ~~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~ 645 (1042)
T PLN02819 567 KKSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKY 645 (1042)
T ss_pred ccCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHh
Confidence 35678999999 99999999998764 444 45566665411 11 113 344 6677777642
Q ss_pred -CCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCC
Q 020101 98 -TKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG 166 (331)
Q Consensus 98 -~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~ 166 (331)
.++|+||+++|+..+.++++.|+++|++. + ++.+..++..+|.+.| +++|+.++ |.|. ++|.
T Consensus 646 v~~~DaVIsalP~~~H~~VAkaAieaGkHv-v--~eky~~~e~~~L~e~A-k~AGV~~m-~e~G--lDPG 708 (1042)
T PLN02819 646 VSQVDVVISLLPASCHAVVAKACIELKKHL-V--TASYVSEEMSALDSKA-KEAGITIL-CEMG--LDPG 708 (1042)
T ss_pred hcCCCEEEECCCchhhHHHHHHHHHcCCCE-E--ECcCCHHHHHHHHHHH-HHcCCEEE-ECCc--cCHH
Confidence 26999999999999999999999999987 3 3446667777888887 78887765 4443 5554
No 36
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=98.07 E-value=1e-05 Score=74.50 Aligned_cols=95 Identities=11% Similarity=0.119 Sum_probs=71.8
Q ss_pred CCeEEEEeCCCCCC-c---eecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCC--ChhHH
Q 020101 66 GTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGI--PQHDM 139 (331)
Q Consensus 66 g~~iv~~VnP~~~g-~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~--~e~~~ 139 (331)
++++++..|+.... + +..|.++|.+++++..+ ++|++++++|+..+.+...+++++|++.++ .++|. ..++.
T Consensus 1 ~~eLvaV~D~~~e~a~~~a~~~g~~~~~d~~eLl~~-~vDaVviatp~~~H~e~a~~aL~aGkhVl~-~s~gAlad~e~~ 78 (229)
T TIGR03855 1 NFEIAAVYDRNPKDAKELAERCGAKIVSDFDEFLPE-DVDIVVEAASQEAVKEYAEKILKNGKDLLI-MSVGALADRELR 78 (229)
T ss_pred CeEEEEEECCCHHHHHHHHHHhCCceECCHHHHhcC-CCCEEEECCChHHHHHHHHHHHHCCCCEEE-ECCcccCCHHHH
Confidence 35778788887521 1 23578899999999753 799999999999999999999999999755 77773 34667
Q ss_pred HHHHHHHhccCCcE-EEccCCCCcc
Q 020101 140 VRVKAALNNQSKTR-LVGPNCPGVI 163 (331)
Q Consensus 140 ~~l~~~a~~~~gi~-viGPnc~Gi~ 163 (331)
++|.+.+ +++|.+ .++++.+|..
T Consensus 79 ~~l~~aA-~~~g~~l~i~sGai~g~ 102 (229)
T TIGR03855 79 ERLREVA-RSSGRKVYIPSGAIGGL 102 (229)
T ss_pred HHHHHHH-HhcCCEEEEChHHHHHH
Confidence 7888887 677766 5665554443
No 37
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=98.04 E-value=1.1e-05 Score=70.14 Aligned_cols=109 Identities=16% Similarity=0.182 Sum_probs=74.5
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce--ecCcccccCHHHhhhcCCCCEEEEecChhh-HHHHHHH
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAILE 118 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~--i~G~p~y~sl~dl~~~~~iDlaii~vp~~~-~~~~v~~ 118 (331)
.+|.+||. |+||+.+.++|.+.|+++. ..|+.... ++ -.|....+|++|+.+ ..|++++++|... +.+++..
T Consensus 2 ~~Ig~IGl-G~mG~~~a~~L~~~g~~v~-~~d~~~~~~~~~~~~g~~~~~s~~e~~~--~~dvvi~~v~~~~~v~~v~~~ 77 (163)
T PF03446_consen 2 MKIGFIGL-GNMGSAMARNLAKAGYEVT-VYDRSPEKAEALAEAGAEVADSPAEAAE--QADVVILCVPDDDAVEAVLFG 77 (163)
T ss_dssp BEEEEE---SHHHHHHHHHHHHTTTEEE-EEESSHHHHHHHHHTTEEEESSHHHHHH--HBSEEEE-SSSHHHHHHHHHC
T ss_pred CEEEEEch-HHHHHHHHHHHHhcCCeEE-eeccchhhhhhhHHhhhhhhhhhhhHhh--cccceEeecccchhhhhhhhh
Confidence 57899999 9999999999999999976 56655310 11 257889999999988 6899999999854 5566665
Q ss_pred --HHH-cCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101 119 --AME-AELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156 (331)
Q Consensus 119 --~~~-~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG 156 (331)
+.. ..-..+|+-.+-.+.+..+++.+.+ +++|++++-
T Consensus 78 ~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~-~~~g~~~vd 117 (163)
T PF03446_consen 78 ENILAGLRPGKIIIDMSTISPETSRELAERL-AAKGVRYVD 117 (163)
T ss_dssp TTHGGGS-TTEEEEE-SS--HHHHHHHHHHH-HHTTEEEEE
T ss_pred hHHhhccccceEEEecCCcchhhhhhhhhhh-hhccceeee
Confidence 444 2345555555555667777777776 677877663
No 38
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.04 E-value=3.2e-05 Score=74.48 Aligned_cols=124 Identities=10% Similarity=0.068 Sum_probs=93.1
Q ss_pred CCCeEEEEEcCCCCCCcHHHHHHHH---cCCeEEEEeCCCCCC-ce---ec---CcccccCHHHhhhcCCCCEEEEecCh
Q 020101 40 DKNTRVICQGITGKNGTFHTEQAIE---YGTKMVGGVTPKKGG-TE---HL---GLPVFNTVAEAKAETKANASAIYVPP 109 (331)
Q Consensus 40 ~k~~~VaIvGasgk~G~~~~~~l~~---~g~~iv~~VnP~~~g-~~---i~---G~p~y~sl~dl~~~~~iDlaii~vp~ 109 (331)
.+.+|+.|+|+ |++++...+.+.- .+++|++..+|.... ++ -. ..++|.|.+++.+.+.+|++.|.+|.
T Consensus 4 s~~ir~Gi~g~-g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~ 82 (351)
T KOG2741|consen 4 SATIRWGIVGA-GRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPN 82 (351)
T ss_pred CceeEEEEeeh-hHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCC
Confidence 35689999999 8888888776653 378899999996421 01 12 35799999999988889999999999
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCC
Q 020101 110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG 166 (331)
Q Consensus 110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~ 166 (331)
..+.+++..++++|.+.++=-....+.+|.++|.++| +++|+.++ -....-+.|.
T Consensus 83 ~qH~evv~l~l~~~K~VL~EKPla~n~~e~~~iveaA-~~rgv~~m-eg~~~R~~P~ 137 (351)
T KOG2741|consen 83 PQHYEVVMLALNKGKHVLCEKPLAMNVAEAEEIVEAA-EARGVFFM-EGLWWRFFPR 137 (351)
T ss_pred ccHHHHHHHHHHcCCcEEecccccCCHHHHHHHHHHH-HHcCcEEE-eeeeeecCcH
Confidence 9999999999999988533233356778889999988 78886543 3333444443
No 39
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.98 E-value=2.7e-05 Score=78.01 Aligned_cols=112 Identities=16% Similarity=0.082 Sum_probs=80.0
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHH--------c--CCeEEEEeCCCCCCc---eecCcccccCHHHhhhcCCCCEEEEec
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIE--------Y--GTKMVGGVTPKKGGT---EHLGLPVFNTVAEAKAETKANASAIYV 107 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~--------~--g~~iv~~VnP~~~g~---~i~G~p~y~sl~dl~~~~~iDlaii~v 107 (331)
+.++|+|+|+ |.+|+.+++.+.+ . ++++++.++++.... ...+...|.+++++..+.++|++++++
T Consensus 2 ~~i~VgiiG~-G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~t 80 (426)
T PRK06349 2 KPLKVGLLGL-GTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELM 80 (426)
T ss_pred CeEEEEEEee-CHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECC
Confidence 4689999999 9999988766543 2 356887776554211 123456788999998766899999998
Q ss_pred Ch-hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEE
Q 020101 108 PP-PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155 (331)
Q Consensus 108 p~-~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~vi 155 (331)
++ +.+.+.+++|+++|.+. +.-......++..+|.++| +++|+.+.
T Consensus 81 g~~~~~~~~~~~aL~~GkhV-VtaNK~~~a~~~~eL~~lA-~~~gv~l~ 127 (426)
T PRK06349 81 GGIEPARELILKALEAGKHV-VTANKALLAVHGAELFAAA-EEKGVDLY 127 (426)
T ss_pred CCchHHHHHHHHHHHCCCeE-EEcCHHHHHHHHHHHHHHH-HHcCCcEE
Confidence 65 67889999999999886 3222233334567788887 78887655
No 40
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.97 E-value=3e-05 Score=75.54 Aligned_cols=175 Identities=17% Similarity=0.144 Sum_probs=101.9
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHc----------CCeEEEEeCCCC-----CCce---------ecC-cccc------cC
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEY----------GTKMVGGVTPKK-----GGTE---------HLG-LPVF------NT 90 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~----------g~~iv~~VnP~~-----~g~~---------i~G-~p~y------~s 90 (331)
.++|+|+|+ |++|+.+++.+.+. ++++++.+|++. .|-. ..| ...| .+
T Consensus 2 ~i~V~IiG~-G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (341)
T PRK06270 2 EMKIALIGF-GGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEIS 80 (341)
T ss_pred eEEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCC
Confidence 478999999 99999988877643 467888777531 1100 011 2333 37
Q ss_pred HHHhhhcCCCCEEEEecChhh-----HHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccC
Q 020101 91 VAEAKAETKANASAIYVPPPF-----AAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKP 165 (331)
Q Consensus 91 l~dl~~~~~iDlaii~vp~~~-----~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p 165 (331)
++++..+.++|++++++|+.. +.+.+++|+++|++. +.-+.+.-.....+|.+.| +++|..+.=..+.|=..|
T Consensus 81 ~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhV-VtaNK~pla~~~~eL~~~A-~~~g~~~~~ea~v~~glP 158 (341)
T PRK06270 81 GLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHV-VTSNKGPLALAYKELKELA-KKNGVRFRYEATVGGAMP 158 (341)
T ss_pred HHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEE-EcCCcHHHHhhHHHHHHHH-HHcCCEEEEeeeeeechh
Confidence 888886668999999999754 478899999999886 4322233223445777777 788876652233332333
Q ss_pred C--CcccccCCCCCCCCCCEEEEec--ChHHHHHHHHHHHhCCCCceEEE----ecCC-CC--CCCCCHHHH
Q 020101 166 G--ECKIGIMPGYIHKPGRIGIVSR--SGTLTYEAVFQTTAVGLGQSTCV----GIGG-DP--FNGTNFVDC 226 (331)
Q Consensus 166 ~--~~~~~~~~~~~~~~G~valisQ--SG~~~~~~~~~~~~~g~g~s~~v----s~Gn-~~--~~~v~~~d~ 226 (331)
- .+.-. ...+.|.-|.- ||+.. .+++...+.|..|+.++ ..|- +. ..|++-.|.
T Consensus 159 ii~~l~~~------l~g~~I~~I~GIlnGT~n-yIl~~m~~~g~~f~~al~~Aq~~G~aE~DP~~D~~G~D~ 223 (341)
T PRK06270 159 IINLAKET------LAGNDIKSIKGILNGTTN-YILTRMEEEGLSYEQALAEAQELGYAEADPTYDVEGIDA 223 (341)
T ss_pred HHHHHHhh------cccCceEEEEEEEeCcHH-HHHHHHhhcCCCHHHHHHHHHHcCCCCCCCCCCCccHHH
Confidence 2 11101 22334444321 33332 24444445677776554 3442 22 236666665
No 41
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=97.94 E-value=3.6e-05 Score=74.17 Aligned_cols=114 Identities=18% Similarity=0.198 Sum_probs=76.2
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce--ecCcccccCHHHhhhcCCCCEEEEecChh-hHHHHHH
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVPPP-FAAAAIL 117 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~--i~G~p~y~sl~dl~~~~~iDlaii~vp~~-~~~~~v~ 117 (331)
..+|+|||+ |+||+.++++|.+.|++++...++.... +. -.|+.+. +.+++.+ +.|++++++|++ ....+.+
T Consensus 3 ~kkIgiIG~-G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~--~ADiVvLaVpp~~~~~~v~~ 78 (314)
T TIGR00465 3 GKTVAIIGY-GSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIP--QADLIMNLLPDEVQHEVYEA 78 (314)
T ss_pred cCEEEEEeE-cHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHh--cCCEEEEeCCcHhHHHHHHH
Confidence 456889999 9999999999999999866455554310 11 2466654 4777665 689999999999 5444444
Q ss_pred HHHHc-CCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCc
Q 020101 118 EAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGV 162 (331)
Q Consensus 118 ~~~~~-Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi 162 (331)
+.... .-+.++.++.||+-+..+. ...+...+--+.||+.|.
T Consensus 79 ei~~~l~~g~iVs~aaG~~i~~~~~---~~~~~~~VvrvmPn~p~~ 121 (314)
T TIGR00465 79 EIQPLLKEGKTLGFSHGFNIHFVQI---VPPKDVDVVMVAPKGPGT 121 (314)
T ss_pred HHHhhCCCCcEEEEeCCccHhhccc---cCCCCCcEEEECCCCCcH
Confidence 44432 1234788999998655432 121233466678998885
No 42
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.93 E-value=8.2e-05 Score=68.34 Aligned_cols=113 Identities=13% Similarity=0.155 Sum_probs=76.1
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcC---CeEEEEeCCC-CC-Cce---ecCcccccCHHHhhhcCCCCEEEEecChhhH
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYG---TKMVGGVTPK-KG-GTE---HLGLPVFNTVAEAKAETKANASAIYVPPPFA 112 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g---~~iv~~VnP~-~~-g~~---i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~ 112 (331)
+.++|+|||+ |++|+.+.+.+.+.+ .+.+..+++. .. .+. ..++..+.+++++.+ +.|++++++|+..+
T Consensus 3 ~~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~DiViiavp~~~~ 79 (245)
T PRK07634 3 KKHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVT--SVDTIVLAMPPSAH 79 (245)
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHh--cCCEEEEecCHHHH
Confidence 4578999998 999999999887765 3323355542 21 011 246777888888876 79999999999999
Q ss_pred HHHHHHHHHc-CCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCC
Q 020101 113 AAAILEAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNC 159 (331)
Q Consensus 113 ~~~v~~~~~~-Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc 159 (331)
.++++++... .-+.+|-.+.|++.+..++ .......+-.++||.
T Consensus 80 ~~v~~~l~~~~~~~~vis~~~gi~~~~l~~---~~~~~~~v~r~~Pn~ 124 (245)
T PRK07634 80 EELLAELSPLLSNQLVVTVAAGIGPSYLEE---RLPKGTPVAWIMPNT 124 (245)
T ss_pred HHHHHHHHhhccCCEEEEECCCCCHHHHHH---HcCCCCeEEEECCcH
Confidence 9999887642 2256666778997665443 221122344578873
No 43
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.93 E-value=3.6e-05 Score=73.12 Aligned_cols=88 Identities=18% Similarity=0.070 Sum_probs=68.6
Q ss_pred eEEEEEcCCCCCCcHHHHHHHH-cCCeEEEEeCCCCC--C---ceecCccc-ccCHHHhhhcCCCCEEEEecChhhHHHH
Q 020101 43 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKG--G---TEHLGLPV-FNTVAEAKAETKANASAIYVPPPFAAAA 115 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~-~g~~iv~~VnP~~~--g---~~i~G~p~-y~sl~dl~~~~~iDlaii~vp~~~~~~~ 115 (331)
++|+|||+ |++|+.++..+.+ .++++++.+++... + .+-.|++. |.+++++.++.++|+++++||+..+.+.
T Consensus 2 lrVAIIG~-G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~ 80 (285)
T TIGR03215 2 VKVAIIGS-GNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARH 80 (285)
T ss_pred cEEEEEeC-cHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHH
Confidence 67999998 9999998776665 46888776654432 1 12368875 4589998876679999999999999999
Q ss_pred HHHHHHcCCcEEEEecC
Q 020101 116 ILEAMEAELDLVVCITE 132 (331)
Q Consensus 116 v~~~~~~Gi~~ivi~t~ 132 (331)
+.++.++|++. ++.++
T Consensus 81 a~~al~aGk~V-IdekP 96 (285)
T TIGR03215 81 ARLLAELGKIV-IDLTP 96 (285)
T ss_pred HHHHHHcCCEE-EECCc
Confidence 99999999886 54554
No 44
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.91 E-value=4.6e-05 Score=74.25 Aligned_cols=93 Identities=13% Similarity=0.133 Sum_probs=68.3
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCceec---C-cc-----cccCHHHhhhcCCCCEEEEecChhh
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHL---G-LP-----VFNTVAEAKAETKANASAIYVPPPF 111 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~~i~---G-~p-----~y~sl~dl~~~~~iDlaii~vp~~~ 111 (331)
.++|+|+||+|.+|+.+++.+.+. ++++++.++.+..++.+. + ++ .|.++++.. ..++|++++++|...
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~-~~~vD~Vf~alP~~~ 80 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEI-LAGADVVFLALPHGV 80 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHH-hcCCCEEEECCCcHH
Confidence 368999999999999999998886 688887777543333221 1 21 344454432 236999999999999
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCh
Q 020101 112 AAAAILEAMEAELDLVVCITEGIPQ 136 (331)
Q Consensus 112 ~~~~v~~~~~~Gi~~ivi~t~G~~e 136 (331)
+.+.+.++.++|++. |-.+..|.-
T Consensus 81 ~~~~v~~a~~aG~~V-ID~S~~fR~ 104 (343)
T PRK00436 81 SMDLAPQLLEAGVKV-IDLSADFRL 104 (343)
T ss_pred HHHHHHHHHhCCCEE-EECCcccCC
Confidence 999999999999765 667777643
No 45
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.89 E-value=3.1e-05 Score=75.42 Aligned_cols=86 Identities=21% Similarity=0.244 Sum_probs=67.0
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCC---------Cce-------------ecCcccccCHHHhhhcCC
Q 020101 43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKG---------GTE-------------HLGLPVFNTVAEAKAETK 99 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~---------g~~-------------i~G~p~y~sl~dl~~~~~ 99 (331)
+||+|+|+ |++|+.+++.+.+. ++++++.++++.. |-. -.+++++.+++++.+ +
T Consensus 2 ikVaI~G~-GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~--~ 78 (341)
T PRK04207 2 IKVGVNGY-GTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLE--K 78 (341)
T ss_pred eEEEEECC-CHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhc--c
Confidence 68999999 99999999988764 7899977764421 000 025667778888876 7
Q ss_pred CCEEEEecChhhHHHHHHHHHHcCCcEEEEecCC
Q 020101 100 ANASAIYVPPPFAAAAILEAMEAELDLVVCITEG 133 (331)
Q Consensus 100 iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G 133 (331)
+|++++|+|+..+.+.++.++++|.+. | ++.+
T Consensus 79 vDVVIdaT~~~~~~e~a~~~~~aGk~V-I-~~~~ 110 (341)
T PRK04207 79 ADIVVDATPGGVGAKNKELYEKAGVKA-I-FQGG 110 (341)
T ss_pred CCEEEECCCchhhHHHHHHHHHCCCEE-E-EcCC
Confidence 999999999999999999999999654 3 4555
No 46
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.88 E-value=5.4e-05 Score=72.38 Aligned_cols=90 Identities=14% Similarity=0.053 Sum_probs=70.9
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCC--CC---ceecCccc-ccCHHHhhhc---CCCCEEEEecChh
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKK--GG---TEHLGLPV-FNTVAEAKAE---TKANASAIYVPPP 110 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~--~g---~~i~G~p~-y~sl~dl~~~---~~iDlaii~vp~~ 110 (331)
+.++|+|||. |++|+.++..+.+. ++++++.+++.. .+ ..-.|++. |.+++++.+. .++|+++++||++
T Consensus 3 ~klrVAIIGt-G~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~ 81 (302)
T PRK08300 3 SKLKVAIIGS-GNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAG 81 (302)
T ss_pred CCCeEEEEcC-cHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHH
Confidence 4689999995 99999988777654 678887765543 22 12468886 5789999875 5799999999999
Q ss_pred hHHHHHHHHHHcCCcEEEEecC
Q 020101 111 FAAAAILEAMEAELDLVVCITE 132 (331)
Q Consensus 111 ~~~~~v~~~~~~Gi~~ivi~t~ 132 (331)
.+.+....+.++|++. +..++
T Consensus 82 ~H~e~a~~a~eaGk~V-ID~sP 102 (302)
T PRK08300 82 AHVRHAAKLREAGIRA-IDLTP 102 (302)
T ss_pred HHHHHHHHHHHcCCeE-EECCc
Confidence 9999999999999886 55555
No 47
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.86 E-value=3.8e-05 Score=64.48 Aligned_cols=95 Identities=18% Similarity=0.112 Sum_probs=61.3
Q ss_pred CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc-----eecCcccccCHHHhhhcCCCCEEEEecChhhHHH
Q 020101 40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-----EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAA 114 (331)
Q Consensus 40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~-----~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~ 114 (331)
+...+|.|||+ ||.|+.+.+.|.+.|+++.+..+++.... .+.+.+ +.+++|+.+ +.|++++++|.+...+
T Consensus 8 ~~~l~I~iIGa-GrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~-~~~~~~~~~--~aDlv~iavpDdaI~~ 83 (127)
T PF10727_consen 8 AARLKIGIIGA-GRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGA-ILDLEEILR--DADLVFIAVPDDAIAE 83 (127)
T ss_dssp ----EEEEECT-SCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT------TTGGGC--C-SEEEE-S-CCHHHH
T ss_pred CCccEEEEECC-CHHHHHHHHHHHHCCCeEEEEEeCCccccccccccccccc-ccccccccc--cCCEEEEEechHHHHH
Confidence 45688999999 99999999999999999886556553211 133333 445777776 7999999999999999
Q ss_pred HHHHHHHc---CCcEEEEecCCCChhH
Q 020101 115 AILEAMEA---ELDLVVCITEGIPQHD 138 (331)
Q Consensus 115 ~v~~~~~~---Gi~~ivi~t~G~~e~~ 138 (331)
+++++... .-..+|+-++|--..+
T Consensus 84 va~~La~~~~~~~g~iVvHtSGa~~~~ 110 (127)
T PF10727_consen 84 VAEQLAQYGAWRPGQIVVHTSGALGSD 110 (127)
T ss_dssp HHHHHHCC--S-TT-EEEES-SS--GG
T ss_pred HHHHHHHhccCCCCcEEEECCCCChHH
Confidence 99999887 2456788888864433
No 48
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=97.86 E-value=6.5e-05 Score=72.78 Aligned_cols=115 Identities=24% Similarity=0.278 Sum_probs=77.6
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc---eecCcccccCHHHhhhcCCCCEEEEecChhhHHHHH-H
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI-L 117 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v-~ 117 (331)
..+|+|||. |++|+.++++|++.|++++....+..... ...|+... +++++.+ ..|++++++|+....+++ +
T Consensus 17 gktIgIIG~-GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~--~ADVVvLaVPd~~~~~V~~~ 92 (330)
T PRK05479 17 GKKVAIIGY-GSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAK--WADVIMILLPDEVQAEVYEE 92 (330)
T ss_pred CCEEEEEee-HHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHh--cCCEEEEcCCHHHHHHHHHH
Confidence 456888999 99999999999999998764433322101 12466655 7888887 789999999999888887 4
Q ss_pred HHHHc-CCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcc
Q 020101 118 EAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVI 163 (331)
Q Consensus 118 ~~~~~-Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~ 163 (331)
+...+ .-..+++++.||+-...... ..+...+-.+.||+.|..
T Consensus 93 ~I~~~Lk~g~iL~~a~G~~i~~~~~~---p~~~~~Vi~vaPn~Pg~~ 136 (330)
T PRK05479 93 EIEPNLKEGAALAFAHGFNIHFGQIV---PPADVDVIMVAPKGPGHL 136 (330)
T ss_pred HHHhcCCCCCEEEECCCCChhhceec---cCCCCcEEEeCCCCCchh
Confidence 44432 22346689999975543211 112334555669977653
No 49
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.77 E-value=0.00019 Score=67.31 Aligned_cols=110 Identities=12% Similarity=0.114 Sum_probs=81.2
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHc---CCeEEEEeCCCCCC-ce-ecCcccccCHHHhhhcCCCCEEEEecChhhHHHHH
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGG-TE-HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI 116 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~---g~~iv~~VnP~~~g-~~-i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v 116 (331)
..||+|||+ |.+|+.+.+.+.+. ++++++..++.... +. ....+++.+++++..+ ++|++|=|-+++.+.+..
T Consensus 2 ~~rvgiIG~-GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~-~~DlVVE~A~~~av~e~~ 79 (267)
T PRK13301 2 THRIAFIGL-GAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAW-RPDLVVEAAGQQAIAEHA 79 (267)
T ss_pred ceEEEEECc-cHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhc-CCCEEEECCCHHHHHHHH
Confidence 367999999 99999999988753 47777554443210 11 2337889999997432 799999999999999999
Q ss_pred HHHHHcCCcEEEEecCC-CChhH-HHHHHHHHhccCCcEEE
Q 020101 117 LEAMEAELDLVVCITEG-IPQHD-MVRVKAALNNQSKTRLV 155 (331)
Q Consensus 117 ~~~~~~Gi~~ivi~t~G-~~e~~-~~~l~~~a~~~~gi~vi 155 (331)
..++++|+..++ ++.| |.+++ .++|.+.| +++|-++.
T Consensus 80 ~~iL~~g~dlvv-~SvGALaD~~~~~~l~~~A-~~~g~~i~ 118 (267)
T PRK13301 80 EGCLTAGLDMII-CSAGALADDALRARLIAAA-EAGGARIR 118 (267)
T ss_pred HHHHhcCCCEEE-EChhHhcCHHHHHHHHHHH-HhCCCEEE
Confidence 999999999854 6776 55544 45677776 66665544
No 50
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.73 E-value=0.00025 Score=64.71 Aligned_cols=107 Identities=16% Similarity=0.235 Sum_probs=80.9
Q ss_pred EEEEEcCCCCCCcHHHHHHHHc--CCeEEEEeCCCCCC-c---eecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHH
Q 020101 44 RVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAIL 117 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~--g~~iv~~VnP~~~g-~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~ 117 (331)
+|.|||+ |.+|+.+.+.+++. ++++++..|..... + .-.+.++..+++|+.. .+|+++=+..++++.+.+.
T Consensus 2 ~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~--~~DlvVEaAS~~Av~e~~~ 78 (255)
T COG1712 2 KVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIA--EVDLVVEAASPEAVREYVP 78 (255)
T ss_pred eEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhh--ccceeeeeCCHHHHHHHhH
Confidence 6889999 99999999988865 57877665554411 1 1235555688999986 7999999999999999999
Q ss_pred HHHHcCCcEEEEecCC-CChhHHH-HHHHHHhccCCcEEE
Q 020101 118 EAMEAELDLVVCITEG-IPQHDMV-RVKAALNNQSKTRLV 155 (331)
Q Consensus 118 ~~~~~Gi~~ivi~t~G-~~e~~~~-~l~~~a~~~~gi~vi 155 (331)
+++++|++.++ ++.| +++++.. ++.+.+ +..+-++-
T Consensus 79 ~~L~~g~d~iV-~SVGALad~~l~erl~~la-k~~~~rv~ 116 (255)
T COG1712 79 KILKAGIDVIV-MSVGALADEGLRERLRELA-KCGGARVY 116 (255)
T ss_pred HHHhcCCCEEE-EechhccChHHHHHHHHHH-hcCCcEEE
Confidence 99999999866 5666 6776654 555666 66665544
No 51
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.73 E-value=0.00012 Score=69.56 Aligned_cols=123 Identities=16% Similarity=0.260 Sum_probs=87.2
Q ss_pred CCcccccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC---ceecCcccccCHHHhhhcCCCCEEEEecC
Q 020101 32 PPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG---TEHLGLPVFNTVAEAKAETKANASAIYVP 108 (331)
Q Consensus 32 ~~l~~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g---~~i~G~p~y~sl~dl~~~~~iDlaii~vp 108 (331)
++++ +|.. .+|+|||. |..|+.+..||++.|.+++.++-+.... .+-.|+.+|+ ++|+.. ..|++++.+|
T Consensus 11 a~l~-~Lkg--K~iaIIGY-GsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~-v~ea~k--~ADvim~L~P 83 (338)
T COG0059 11 ADLD-LLKG--KKVAIIGY-GSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYT-VEEAAK--RADVVMILLP 83 (338)
T ss_pred CChh-HhcC--CeEEEEec-ChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeec-HHHHhh--cCCEEEEeCc
Confidence 4566 6644 46788999 9999999999999999977677665420 1247888776 777776 7899999999
Q ss_pred hhhHHHHHHHHHHcC--CcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCccc
Q 020101 109 PPFAAAAILEAMEAE--LDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIK 164 (331)
Q Consensus 109 ~~~~~~~v~~~~~~G--i~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~ 164 (331)
.+...++.++-++-. -..++.|+.||+-.-.. .+- .+.-.+-++.|-|.|-..
T Consensus 84 De~q~~vy~~~I~p~Lk~G~aL~FaHGfNihf~~--i~p-pkdvdV~MVAPKgPG~~V 138 (338)
T COG0059 84 DEQQKEVYEKEIAPNLKEGAALGFAHGFNIHFGL--IVP-PKDVDVIMVAPKGPGHLV 138 (338)
T ss_pred hhhHHHHHHHHhhhhhcCCceEEeccccceecce--ecC-CccCcEEEEcCCCCcHHH
Confidence 999999888666533 23457799999753211 111 134456678888887443
No 52
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.73 E-value=0.00019 Score=68.54 Aligned_cols=115 Identities=19% Similarity=0.210 Sum_probs=77.6
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-c--eecCcccccCHHHhhhcC-CCCEEEEecChh-hHHHHHHH
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-T--EHLGLPVFNTVAEAKAET-KANASAIYVPPP-FAAAAILE 118 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~--~i~G~p~y~sl~dl~~~~-~iDlaii~vp~~-~~~~~v~~ 118 (331)
+|++||. |+||+.+.++|.+.|++++ ..|+.... + .-.|...+.+++|+.+.. ++|++++++|+. .+.++++.
T Consensus 2 ~Ig~IGl-G~MG~~mA~~L~~~g~~v~-v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~~ 79 (301)
T PRK09599 2 QLGMIGL-GRMGGNMARRLLRGGHEVV-GYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATIDE 79 (301)
T ss_pred EEEEEcc-cHHHHHHHHHHHHCCCeEE-EEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHHH
Confidence 6889999 9999999999999999876 66765410 1 124777888999887631 379999999987 66666666
Q ss_pred HHHc-CC-cEEEEecCCCChhHHHHHHHHHhccCCcEEE-ccCCCCc
Q 020101 119 AMEA-EL-DLVVCITEGIPQHDMVRVKAALNNQSKTRLV-GPNCPGV 162 (331)
Q Consensus 119 ~~~~-Gi-~~ivi~t~G~~e~~~~~l~~~a~~~~gi~vi-GPnc~Gi 162 (331)
+... .- +.++..+++. .+...++.+.+ ++.|++++ .|.+-|.
T Consensus 80 l~~~l~~g~ivid~st~~-~~~~~~~~~~~-~~~g~~~~dapvsG~~ 124 (301)
T PRK09599 80 LAPLLSPGDIVIDGGNSY-YKDDIRRAELL-AEKGIHFVDVGTSGGV 124 (301)
T ss_pred HHhhCCCCCEEEeCCCCC-hhHHHHHHHHH-HHcCCEEEeCCCCcCH
Confidence 5543 11 3344444444 34455566666 67888865 4555443
No 53
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.71 E-value=0.00016 Score=68.99 Aligned_cols=110 Identities=18% Similarity=0.197 Sum_probs=75.5
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce--ecCcccccCHHHhhhcC-CCCEEEEecChh-hHHHHHHH
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAET-KANASAIYVPPP-FAAAAILE 118 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~--i~G~p~y~sl~dl~~~~-~iDlaii~vp~~-~~~~~v~~ 118 (331)
+|.+||. |+||..+.+++.+.|++++ ..|++... +. -.|...+.+.+++.++. +.|++++++|++ .+.++++.
T Consensus 2 ~Ig~IGl-G~mG~~mA~~L~~~g~~v~-v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~ 79 (299)
T PRK12490 2 KLGLIGL-GKMGGNMAERLREDGHEVV-GYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIKD 79 (299)
T ss_pred EEEEEcc-cHHHHHHHHHHHhCCCEEE-EEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHHH
Confidence 5889999 9999999999999999876 56765411 11 24778888999987631 269999999998 66777766
Q ss_pred HHHcC-CcEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101 119 AMEAE-LDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156 (331)
Q Consensus 119 ~~~~G-i~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG 156 (331)
+...- -..+|+-.+..+.....++.+.+ +++|++++-
T Consensus 80 i~~~l~~g~ivid~st~~~~~~~~~~~~~-~~~g~~~vd 117 (299)
T PRK12490 80 LYPLLSPGDIVVDGGNSRYKDDLRRAEEL-AERGIHYVD 117 (299)
T ss_pred HhccCCCCCEEEECCCCCchhHHHHHHHH-HHcCCeEEe
Confidence 55432 23345444444455555666655 567777653
No 54
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=97.68 E-value=0.00029 Score=67.18 Aligned_cols=113 Identities=15% Similarity=0.147 Sum_probs=74.5
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce--ecCcccccCHHHhhhc-CCCCEEEEecChhhHHHHHHHH
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAE-TKANASAIYVPPPFAAAAILEA 119 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~--i~G~p~y~sl~dl~~~-~~iDlaii~vp~~~~~~~v~~~ 119 (331)
+|.|||. |+||..+.++|.+.|++++ ..|++... +. -.|...+.+++++.+. ..+|++++++|+..+.++++++
T Consensus 2 ~Ig~IGl-G~mG~~la~~L~~~g~~V~-~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~~l 79 (298)
T TIGR00872 2 QLGLIGL-GRMGANIVRRLAKRGHDCV-GYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAVLEEL 79 (298)
T ss_pred EEEEEcc-hHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHHHHHH
Confidence 5889999 9999999999999999876 56665410 11 1355666777776542 2589999999999888888776
Q ss_pred HHcC-C-cEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCC
Q 020101 120 MEAE-L-DLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCP 160 (331)
Q Consensus 120 ~~~G-i-~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~ 160 (331)
...- - +.++..+++.+ .+..++.+.+ ++.|++++.-.-.
T Consensus 80 ~~~l~~g~ivid~st~~~-~~t~~~~~~~-~~~g~~~vda~vs 120 (298)
T TIGR00872 80 APTLEKGDIVIDGGNSYY-KDSLRRYKLL-KEKGIHLLDCGTS 120 (298)
T ss_pred HhhCCCCCEEEECCCCCc-ccHHHHHHHH-HhcCCeEEecCCC
Confidence 6431 2 33343444433 3444444444 5778887754333
No 55
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=97.64 E-value=0.00039 Score=65.87 Aligned_cols=109 Identities=16% Similarity=0.164 Sum_probs=71.5
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce--ecCcccccCHHHhhhcCCCCEEEEecChhhHHHHH---
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI--- 116 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~--i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v--- 116 (331)
.+|.|||+ |.||..+.+.+.+.|++++ ..|++... +. -.|.....+++++.+ +.|++++++|.....+.+
T Consensus 3 ~~IgviG~-G~mG~~~a~~l~~~g~~v~-~~d~~~~~~~~~~~~g~~~~~~~~e~~~--~~d~vi~~vp~~~~~~~v~~~ 78 (296)
T PRK11559 3 MKVGFIGL-GIMGKPMSKNLLKAGYSLV-VYDRNPEAVAEVIAAGAETASTAKAVAE--QCDVIITMLPNSPHVKEVALG 78 (296)
T ss_pred ceEEEEcc-CHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHCCCeecCCHHHHHh--cCCEEEEeCCCHHHHHHHHcC
Confidence 36889999 9999999999999999876 67776410 11 246667778888877 789999999976654433
Q ss_pred -HHHHHc-CCcEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101 117 -LEAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156 (331)
Q Consensus 117 -~~~~~~-Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG 156 (331)
+.+... .-..+|+-.+..+....+++.+.+ ++.|+.++-
T Consensus 79 ~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~-~~~g~~~~d 119 (296)
T PRK11559 79 ENGIIEGAKPGTVVIDMSSIAPLASREIAAAL-KAKGIEMLD 119 (296)
T ss_pred cchHhhcCCCCcEEEECCCCCHHHHHHHHHHH-HHcCCcEEE
Confidence 222322 223344434444555566666666 456766553
No 56
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.63 E-value=0.00015 Score=59.93 Aligned_cols=88 Identities=17% Similarity=0.191 Sum_probs=63.5
Q ss_pred EEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCC-CCceec-Ccc---------ccc-CHHHhhhcCCCCEEEEecChh
Q 020101 44 RVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKK-GGTEHL-GLP---------VFN-TVAEAKAETKANASAIYVPPP 110 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~-~g~~i~-G~p---------~y~-sl~dl~~~~~iDlaii~vp~~ 110 (331)
||+|+||+|..|+.+++.|.++ .++++..+..+. .|+.+. ..| +-+ +.+++ . ++|+++.|+|..
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~Dvvf~a~~~~ 77 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEEL-S--DVDVVFLALPHG 77 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHH-T--TESEEEE-SCHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHh-h--cCCEEEecCchh
Confidence 6899999999999999999986 578776666555 444321 111 111 23333 3 799999999999
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCC
Q 020101 111 FAAAAILEAMEAELDLVVCITEGIP 135 (331)
Q Consensus 111 ~~~~~v~~~~~~Gi~~ivi~t~G~~ 135 (331)
.+.+.+..+++.|++. +=.++-|.
T Consensus 78 ~~~~~~~~~~~~g~~V-iD~s~~~R 101 (121)
T PF01118_consen 78 ASKELAPKLLKAGIKV-IDLSGDFR 101 (121)
T ss_dssp HHHHHHHHHHHTTSEE-EESSSTTT
T ss_pred HHHHHHHHHhhCCcEE-EeCCHHHh
Confidence 9999999999999964 55666663
No 57
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=97.61 E-value=0.00018 Score=62.65 Aligned_cols=117 Identities=21% Similarity=0.330 Sum_probs=74.5
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC---ceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHH
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG---TEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAIL 117 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g---~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~ 117 (331)
+..+|+|+|. |+.|+.+..||++.|++++.+..+.... .+..|+.+++ ++|..+ ..|++++.+|.+...++.+
T Consensus 3 ~~k~IAViGy-GsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~-~~eAv~--~aDvV~~L~PD~~q~~vy~ 78 (165)
T PF07991_consen 3 KGKTIAVIGY-GSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMS-VAEAVK--KADVVMLLLPDEVQPEVYE 78 (165)
T ss_dssp CTSEEEEES--SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCE-HHHHHH--C-SEEEE-S-HHHHHHHHH
T ss_pred CCCEEEEECC-ChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeecc-HHHHHh--hCCEEEEeCChHHHHHHHH
Confidence 3456788999 9999999999999999977566665411 1257888874 777776 6899999999999999886
Q ss_pred HHHHc--CCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCccc
Q 020101 118 EAMEA--ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIK 164 (331)
Q Consensus 118 ~~~~~--Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~ 164 (331)
+-++. .....++|+.||+-.-. .+. - .+.-++-++.|...|-..
T Consensus 79 ~~I~p~l~~G~~L~fahGfni~~~-~i~-p-p~~vdV~mvAPKgpG~~v 124 (165)
T PF07991_consen 79 EEIAPNLKPGATLVFAHGFNIHYG-LIK-P-PKDVDVIMVAPKGPGHLV 124 (165)
T ss_dssp HHHHHHS-TT-EEEESSSHHHHCT-TS-----TTSEEEEEEESSSCHHH
T ss_pred HHHHhhCCCCCEEEeCCcchhhcC-ccc-C-CCCCeEEEEecCCCChHH
Confidence 66653 34567889999963211 111 1 123445677888776443
No 58
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=97.59 E-value=0.0002 Score=56.16 Aligned_cols=73 Identities=15% Similarity=0.188 Sum_probs=54.9
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcC---CeEEEEeCCCCCCc----eecCccccc-CHHHhhhcCCCCEEEEecChhhHHHH
Q 020101 44 RVICQGITGKNGTFHTEQAIEYG---TKMVGGVTPKKGGT----EHLGLPVFN-TVAEAKAETKANASAIYVPPPFAAAA 115 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g---~~iv~~VnP~~~g~----~i~G~p~y~-sl~dl~~~~~iDlaii~vp~~~~~~~ 115 (331)
||++||+ |+||+.+.+.+.+.| .++....+++.... +..+..++. +..|+.+ +.|++++++||....++
T Consensus 1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~advvilav~p~~~~~v 77 (96)
T PF03807_consen 1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQ--EADVVILAVKPQQLPEV 77 (96)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHH--HTSEEEE-S-GGGHHHH
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhc--cCCEEEEEECHHHHHHH
Confidence 5788999 999999999999988 67662335554111 134556666 7888887 68999999999999999
Q ss_pred HHHH
Q 020101 116 ILEA 119 (331)
Q Consensus 116 v~~~ 119 (331)
+++.
T Consensus 78 ~~~i 81 (96)
T PF03807_consen 78 LSEI 81 (96)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9988
No 59
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.59 E-value=0.00022 Score=68.70 Aligned_cols=111 Identities=22% Similarity=0.189 Sum_probs=72.5
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-cee----------cC------cccccCHHHhhhcCCCCEEE
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH----------LG------LPVFNTVAEAKAETKANASA 104 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~i----------~G------~p~y~sl~dl~~~~~iDlai 104 (331)
.++|+|+|+ |.||..+...|.+.|+++. .+++.... +.+ .| +....++++..+ +.|+++
T Consensus 4 ~m~I~iIG~-G~mG~~ia~~L~~~G~~V~-~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~--~aD~Vi 79 (328)
T PRK14618 4 GMRVAVLGA-GAWGTALAVLAASKGVPVR-LWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALA--GADFAV 79 (328)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHc--CCCEEE
Confidence 457999999 9999999999999999866 66664310 001 13 234457777665 789999
Q ss_pred EecChhhHHHHHHHHHHcCCcEEEEecCCCChhH--HHHHHHHHhcc---CCcE-EEccCC
Q 020101 105 IYVPPPFAAAAILEAMEAELDLVVCITEGIPQHD--MVRVKAALNNQ---SKTR-LVGPNC 159 (331)
Q Consensus 105 i~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~--~~~l~~~a~~~---~gi~-viGPnc 159 (331)
+++|...+.++++.+. .+. .++.++.|+..++ .+++.+.. .+ .++. +.|||.
T Consensus 80 ~~v~~~~~~~v~~~l~-~~~-~vi~~~~Gi~~~~~~~~~l~~~l-~~~~~~~~~~~~gP~~ 137 (328)
T PRK14618 80 VAVPSKALRETLAGLP-RAL-GYVSCAKGLAPDGGRLSELARVL-EFLTQARVAVLSGPNH 137 (328)
T ss_pred EECchHHHHHHHHhcC-cCC-EEEEEeeccccCCCccchHHHHH-HHhcCCCeEEEECccH
Confidence 9999998877775543 333 4566788876433 33444443 22 4443 556663
No 60
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.58 E-value=0.00045 Score=68.29 Aligned_cols=108 Identities=10% Similarity=0.164 Sum_probs=73.9
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcC-CeEEEEeCCCCCC-ce------------ecCcccccCHHHhhhcCCCCEEEEecC
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGG-TE------------HLGLPVFNTVAEAKAETKANASAIYVP 108 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g-~~iv~~VnP~~~g-~~------------i~G~p~y~sl~dl~~~~~iDlaii~vp 108 (331)
.+|+|+|+ |+.|+.++..|.+.+ ++|. ..+.+... .. ...+--.+.+.++.. +.|++|.+.|
T Consensus 2 ~~ilviGa-G~Vg~~va~~la~~~d~~V~-iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~--~~d~VIn~~p 77 (389)
T COG1748 2 MKILVIGA-GGVGSVVAHKLAQNGDGEVT-IADRSKEKCARIAELIGGKVEALQVDAADVDALVALIK--DFDLVINAAP 77 (389)
T ss_pred CcEEEECC-chhHHHHHHHHHhCCCceEE-EEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHh--cCCEEEEeCC
Confidence 46889999 999999999988876 7765 54444210 01 112222335667777 5699999999
Q ss_pred hhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCC
Q 020101 109 PPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNC 159 (331)
Q Consensus 109 ~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc 159 (331)
+.....+++.|++.|++.+= .+ +.++...++.+.+ +++|+.++ |+|
T Consensus 78 ~~~~~~i~ka~i~~gv~yvD-ts--~~~~~~~~~~~~a-~~Agit~v-~~~ 123 (389)
T COG1748 78 PFVDLTILKACIKTGVDYVD-TS--YYEEPPWKLDEEA-KKAGITAV-LGC 123 (389)
T ss_pred chhhHHHHHHHHHhCCCEEE-cc--cCCchhhhhhHHH-HHcCeEEE-ccc
Confidence 99999999999999999833 23 2222225555666 67787755 444
No 61
>PRK08374 homoserine dehydrogenase; Provisional
Probab=97.57 E-value=0.00045 Score=67.24 Aligned_cols=121 Identities=19% Similarity=0.136 Sum_probs=77.2
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHH--------cC--CeEEEEeCCCC-----CCcee---------cC-cccc-------c
Q 020101 42 NTRVICQGITGKNGTFHTEQAIE--------YG--TKMVGGVTPKK-----GGTEH---------LG-LPVF-------N 89 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~--------~g--~~iv~~VnP~~-----~g~~i---------~G-~p~y-------~ 89 (331)
.++|+|+|+ |+.|+.+++.+.+ +| +++++..|.+. .|-.+ .| +.-| +
T Consensus 2 ~i~VaIiG~-GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (336)
T PRK08374 2 EVKVSIFGF-GNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYN 80 (336)
T ss_pred eeEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccC
Confidence 378999999 9999988776554 46 56776655321 01000 01 1111 1
Q ss_pred -CHHHhhhcCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccC
Q 020101 90 -TVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKP 165 (331)
Q Consensus 90 -sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p 165 (331)
+++++..+.++|++|.+++++.+.+...++++.|++. |..+.|.--...+++.+.+ ++++..+.=..+.+.=-|
T Consensus 81 ~~~~ell~~~~~DVvVd~t~~~~a~~~~~~al~~G~~V-VtanK~~la~~~~el~~la-~~~~~~~~~ea~v~~GiP 155 (336)
T PRK08374 81 FSPEEIVEEIDADIVVDVTNDKNAHEWHLEALKEGKSV-VTSNKPPIAFHYDELLDLA-NERNLPYLFEATVMAGTP 155 (336)
T ss_pred CCHHHHHhcCCCCEEEECCCcHHHHHHHHHHHhhCCcE-EECCHHHHHhCHHHHHHHH-HHcCCeEEEeccccccCC
Confidence 5677765457999999999999999999999999997 4345552112334566666 678877664444433333
No 62
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.55 E-value=0.00039 Score=64.79 Aligned_cols=94 Identities=18% Similarity=0.218 Sum_probs=69.0
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcC---CeEEEEeCCCCCC-c---eecCcccccCHHHhhhcCCCCEEEEecChhhHHHH
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYG---TKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA 115 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g---~~iv~~VnP~~~g-~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~ 115 (331)
.+|+|||+ |++|+.+.+.+.+.| .++. .++++... + +..|+.+..+.+++.. +.|++++++|+..+.++
T Consensus 3 m~I~iIG~-G~mG~~la~~l~~~g~~~~~v~-v~~r~~~~~~~~~~~~g~~~~~~~~~~~~--~advVil~v~~~~~~~v 78 (267)
T PRK11880 3 KKIGFIGG-GNMASAIIGGLLASGVPAKDII-VSDPSPEKRAALAEEYGVRAATDNQEAAQ--EADVVVLAVKPQVMEEV 78 (267)
T ss_pred CEEEEEec-hHHHHHHHHHHHhCCCCcceEE-EEcCCHHHHHHHHHhcCCeecCChHHHHh--cCCEEEEEcCHHHHHHH
Confidence 46889999 999999999988877 4444 67776411 1 1136677778888766 68999999999999999
Q ss_pred HHHHHHcCCcEEEEecCCCChhHHH
Q 020101 116 ILEAMEAELDLVVCITEGIPQHDMV 140 (331)
Q Consensus 116 v~~~~~~Gi~~ivi~t~G~~e~~~~ 140 (331)
++++....-+.++-++.|++.+..+
T Consensus 79 ~~~l~~~~~~~vvs~~~gi~~~~l~ 103 (267)
T PRK11880 79 LSELKGQLDKLVVSIAAGVTLARLE 103 (267)
T ss_pred HHHHHhhcCCEEEEecCCCCHHHHH
Confidence 9987664224566677888755443
No 63
>PLN02256 arogenate dehydrogenase
Probab=97.55 E-value=0.00052 Score=65.85 Aligned_cols=103 Identities=15% Similarity=0.212 Sum_probs=73.4
Q ss_pred hhhhhcccccccCCCCCCCCCCCCccc-ccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc--eecCcc
Q 020101 10 VRSLYMSSEICCGQSRSFTTAPPPAPA-VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLP 86 (331)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~--~i~G~p 86 (331)
-|||-.- -|-..|.-.|+.. |.. +=.++..+|+|||+ |.||..+.+.+.+.|++++ ++++..... ...|+.
T Consensus 7 ~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~kI~IIG~-G~mG~slA~~L~~~G~~V~-~~d~~~~~~~a~~~gv~ 80 (304)
T PLN02256 7 PRSLRVR-AIDAAQPFDYESR---LQEELEKSRKLKIGIVGF-GNFGQFLAKTFVKQGHTVL-ATSRSDYSDIAAELGVS 80 (304)
T ss_pred CCCcccc-cccccCCCChHhH---HhHhhccCCCCEEEEEee-CHHHHHHHHHHHhCCCEEE-EEECccHHHHHHHcCCe
Confidence 3444332 3445566566554 333 33677889999998 9999999999998888877 677664111 124677
Q ss_pred cccCHHHhhhcCCCCEEEEecChhhHHHHHHHH
Q 020101 87 VFNTVAEAKAETKANASAIYVPPPFAAAAILEA 119 (331)
Q Consensus 87 ~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~ 119 (331)
.+.+++++... ++|++++++|++...+++++.
T Consensus 81 ~~~~~~e~~~~-~aDvVilavp~~~~~~vl~~l 112 (304)
T PLN02256 81 FFRDPDDFCEE-HPDVVLLCTSILSTEAVLRSL 112 (304)
T ss_pred eeCCHHHHhhC-CCCEEEEecCHHHHHHHHHhh
Confidence 77888887531 589999999999999999887
No 64
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=97.54 E-value=0.00056 Score=64.72 Aligned_cols=109 Identities=14% Similarity=0.084 Sum_probs=71.8
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc---eecCcccccCHHHhhhcCCCCEEEEecChhhHHH-HH---
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAA-AI--- 116 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~-~v--- 116 (331)
+|.|||. |+||..+.+.+.+.|++++ .+|++...- .-.|.....+.+++.+ +.|++++++|.....+ ++
T Consensus 1 ~IgvIG~-G~mG~~iA~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~aDivi~~vp~~~~~~~v~~~~ 76 (291)
T TIGR01505 1 KVGFIGL-GIMGSPMSINLAKAGYQLH-VTTIGPEVADELLAAGAVTAETARQVTE--QADVIFTMVPDSPQVEEVAFGE 76 (291)
T ss_pred CEEEEEe-cHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHCCCcccCCHHHHHh--cCCEEEEecCCHHHHHHHHcCc
Confidence 3788999 9999999999999999876 677764100 1235666778888877 7899999999865443 33
Q ss_pred HHHHHc-CCcEEEEecCCCChhHHHHHHHHHhccCCcEEEcc
Q 020101 117 LEAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGP 157 (331)
Q Consensus 117 ~~~~~~-Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGP 157 (331)
+.+... .-..+|+-.+..+....+++.+.+ ++.|+.++.+
T Consensus 77 ~~~~~~~~~g~iivd~st~~~~~~~~l~~~l-~~~g~~~~~~ 117 (291)
T TIGR01505 77 NGIIEGAKPGKTLVDMSSISPIESKRFAKAV-KEKGIDYLDA 117 (291)
T ss_pred chHhhcCCCCCEEEECCCCCHHHHHHHHHHH-HHcCCCEEec
Confidence 223322 222334434445555566677666 5667777763
No 65
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.54 E-value=0.00082 Score=63.38 Aligned_cols=96 Identities=15% Similarity=0.161 Sum_probs=69.3
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcC----CeEEEEeCCCCCC--ce---ecCcccccCHHHhhhcCCCCEEEEecChhhH
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYG----TKMVGGVTPKKGG--TE---HLGLPVFNTVAEAKAETKANASAIYVPPPFA 112 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g----~~iv~~VnP~~~g--~~---i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~ 112 (331)
..+|.+||+ |+||..+++.+.+.| .+++ ..|+.... +. ..|+....+..++.+ +.|++++++|++..
T Consensus 3 ~mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~-v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~--~aDvVilav~p~~~ 78 (279)
T PRK07679 3 IQNISFLGA-GSIAEAIIGGLLHANVVKGEQIT-VSNRSNETRLQELHQKYGVKGTHNKKELLT--DANILFLAMKPKDV 78 (279)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCCCcceEE-EECCCCHHHHHHHHHhcCceEeCCHHHHHh--cCCEEEEEeCHHHH
Confidence 457999998 999999999998876 4555 66764310 11 236777778888776 68999999999999
Q ss_pred HHHHHHHHHc-CC-cEEEEecCCCChhHHHH
Q 020101 113 AAAILEAMEA-EL-DLVVCITEGIPQHDMVR 141 (331)
Q Consensus 113 ~~~v~~~~~~-Gi-~~ivi~t~G~~e~~~~~ 141 (331)
.++++..... .- +.++-+..|++.+..++
T Consensus 79 ~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~ 109 (279)
T PRK07679 79 AEALIPFKEYIHNNQLIISLLAGVSTHSIRN 109 (279)
T ss_pred HHHHHHHHhhcCCCCEEEEECCCCCHHHHHH
Confidence 9999887643 12 34444568997666554
No 66
>PRK06091 membrane protein FdrA; Validated
Probab=97.52 E-value=0.039 Score=56.84 Aligned_cols=250 Identities=17% Similarity=0.145 Sum_probs=142.2
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCC--CceecCcccccCHHHhhhcCCCCEEEEec--ChhhHHH-HHH
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG--GTEHLGLPVFNTVAEAKAETKANASAIYV--PPPFAAA-AIL 117 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~--g~~i~G~p~y~sl~dl~~~~~iDlaii~v--p~~~~~~-~v~ 117 (331)
=+|+||+.||.+++.++..+.+.|.-+-..|.-... .+++.|+..-.-++-+.++++.++++++. |.+...+ .++
T Consensus 194 G~IgiVSQSGtl~~~v~~~a~~~GiG~S~~Vs~Gn~Dls~~~ggi~~~D~L~~L~~DP~TkvIvly~kppaE~v~~~fl~ 273 (555)
T PRK06091 194 GNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSAEVGGISALTALEMLSADEKSEVIAFVSKPPAEAVRLKIIN 273 (555)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHcCCCeEEEEECCCCccccccCCCCHHHHHHHHhhCCCCcEEEEEEecCchHHHHHHHH
Confidence 347889999999988888887765443333443320 01233554444456655556788999888 3344444 334
Q ss_pred HHHHcCCcEEEEecCCCChh-----------HHHHHHHHHhccCCcEEEccCCCCcccCCCcccccCCCCCCCCCCEEEE
Q 020101 118 EAMEAELDLVVCITEGIPQH-----------DMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIV 186 (331)
Q Consensus 118 ~~~~~Gi~~ivi~t~G~~e~-----------~~~~l~~~a~~~~gi~viGPnc~Gi~~p~~~~~~~~~~~~~~~G~vali 186 (331)
.+-+.+.+. |++-.|-++. +.+++.+.+..-.+......+ . ..+..+.|==+
T Consensus 274 aar~~~KPV-Vvlk~Grs~~g~~q~GVi~a~tleEl~~~A~~la~~~~~~~~--------------~--~~~~~~~irGl 336 (555)
T PRK06091 274 AMKATGKPV-VALFLGYTPAVARDENVWFASTLDEAARLACLLSRVTAQRNA--------------I--LPVSQGFICGL 336 (555)
T ss_pred HHhhCCCCE-EEEEecCCchhhhcCCeEEeCCHHHHHHHHHHHhcccccccc--------------c--ccccCCeeEEE
Confidence 344456555 5566665542 233444433111111111100 1 01233344344
Q ss_pred ecChHHHHHHHHHHHhCCCCce----------------EEEecCCCCC------CCCCH---HHHHHHhhcCCCccEEEE
Q 020101 187 SRSGTLTYEAVFQTTAVGLGQS----------------TCVGIGGDPF------NGTNF---VDCVTKFIADPQTEGIIL 241 (331)
Q Consensus 187 sQSG~~~~~~~~~~~~~g~g~s----------------~~vs~Gn~~~------~~v~~---~d~l~~l~~Dp~T~~I~l 241 (331)
.--|+++.+.+ .+.+...++. .+|-+|-+.| +-++. .+.|.-..+||+|.+|+|
T Consensus 337 y~GGTL~~Ea~-~~~~~~~~~~~~~~~~~~~~l~~~~h~~iDlGdD~~T~GrpHPMIDp~~R~~~~~~~a~dp~~~Vill 415 (555)
T PRK06091 337 YTGGTLAAEAA-GLLAGHLGVEADDEHHHGMMLDADGHQIIDLGDDFYTVGRPHPMIDPTLRNQLIADLGAKPQVRVLLL 415 (555)
T ss_pred ecCchHHHHHH-HHHHhcCCCccCCcCCccceeecCCceEEecCcccccCCCCCCCcChHHHHHHHHHhccCCcceEEEE
Confidence 45688998877 5544444432 3555555432 22333 355666788999999999
Q ss_pred EEc-cCCCcHHHHHHHHHHh------C---CCCCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeC
Q 020101 242 IGE-IGGTAEEDAAALIKES------G---TEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVE 311 (331)
Q Consensus 242 y~E-~~g~~~~~~~~f~~a~------r---~~KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~ 311 (331)
-+. +.|.++.-+..++.++ + +.-+||+...|+-.. -. +.+.-.+.|+++|+++++
T Consensus 416 D~vlGyGah~dpa~~l~~ai~~~~~~~~~~r~l~~v~~v~GT~~D-pQ--------------~~~~q~~~L~~aGv~v~~ 480 (555)
T PRK06091 416 DVVIGFGATADPAGSLVSAIQKACAARADGQPLYAIATVTGTERD-PQ--------------CRSQQIATLEDAGIAVVD 480 (555)
T ss_pred EeeeccCCCCChHHHHHHHHHHHHhhhhcCCceEEEEEEeCCCCC-Cc--------------CHHHHHHHHHhCCeEEEc
Confidence 866 3465544444555543 2 445677777786443 11 234446889999999999
Q ss_pred CHhHHHHHHHHHHH
Q 020101 312 SPAKIGAAMLEVFK 325 (331)
Q Consensus 312 ~~~el~~~~~a~~~ 325 (331)
|-.+-..++..+..
T Consensus 481 sn~~a~~~a~~~~~ 494 (555)
T PRK06091 481 SLPEATLLAAALIR 494 (555)
T ss_pred CcHHHHHHHHHHhh
Confidence 99999988887663
No 67
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=97.52 E-value=5.8e-05 Score=61.76 Aligned_cols=104 Identities=15% Similarity=0.141 Sum_probs=71.8
Q ss_pred cCCCCCCcHHHHHHHHc----CCeEEEEeCCC--CCCc---eecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHH
Q 020101 49 GITGKNGTFHTEQAIEY----GTKMVGGVTPK--KGGT---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEA 119 (331)
Q Consensus 49 Gasgk~G~~~~~~l~~~----g~~iv~~VnP~--~~g~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~ 119 (331)
|+ |++|+.+++.+.+. ++++++..|.+ .... ...+...+.+++++.+..++|++|.+++++.+.+.++++
T Consensus 1 G~-G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~~~~~~~ 79 (117)
T PF03447_consen 1 GF-GNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVAEYYEKA 79 (117)
T ss_dssp ---SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHHHHHHHH
Confidence 55 88999999988764 67888777776 1001 123456777899998756799999999999999999999
Q ss_pred HHcCCcEEEEecCC-CC-hhHHHHHHHHHhccCCcEEE
Q 020101 120 MEAELDLVVCITEG-IP-QHDMVRVKAALNNQSKTRLV 155 (331)
Q Consensus 120 ~~~Gi~~ivi~t~G-~~-e~~~~~l~~~a~~~~gi~vi 155 (331)
+++|++.+. .+-+ ++ .....+|.++| +++|.++.
T Consensus 80 L~~G~~VVt-~nk~ala~~~~~~~L~~~A-~~~g~~~~ 115 (117)
T PF03447_consen 80 LERGKHVVT-ANKGALADEALYEELREAA-RKNGVRIY 115 (117)
T ss_dssp HHTTCEEEE-S-HHHHHSHHHHHHHHHHH-HHHT-EEE
T ss_pred HHCCCeEEE-ECHHHhhhHHHHHHHHHHH-HHcCCEEE
Confidence 999999733 3333 32 23456777777 78777653
No 68
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.51 E-value=0.00064 Score=58.73 Aligned_cols=110 Identities=16% Similarity=0.216 Sum_probs=68.4
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCC----------------C-ceecCcccccCHHHhhhcCCCCEEEEe
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG----------------G-TEHLGLPVFNTVAEAKAETKANASAIY 106 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~----------------g-~~i~G~p~y~sl~dl~~~~~iDlaii~ 106 (331)
||+|+|+ |++|.++...+.+.|.++. ...++.. + +-...+.+.++++++.+ +.|+++++
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~g~~V~-l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~--~ad~Iiia 76 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADNGHEVT-LWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALE--DADIIIIA 76 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHCTEEEE-EETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHT--T-SEEEE-
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCEEE-EEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhC--cccEEEec
Confidence 5889999 9999999999999987754 4333210 0 00123456678988887 78999999
Q ss_pred cChhhHHHHHHHHHHc--CCcEEEEecCCCChhH---H-HHHHHHHhccCCcE-EEccC
Q 020101 107 VPPPFAAAAILEAMEA--ELDLVVCITEGIPQHD---M-VRVKAALNNQSKTR-LVGPN 158 (331)
Q Consensus 107 vp~~~~~~~v~~~~~~--Gi~~ivi~t~G~~e~~---~-~~l~~~a~~~~gi~-viGPn 158 (331)
+|...+.++++++... .-+.+++.+-||.... . +.+.+.. ....+. +.||+
T Consensus 77 vPs~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~-~~~~~~~lsGP~ 134 (157)
T PF01210_consen 77 VPSQAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEIL-PIPRIAVLSGPS 134 (157)
T ss_dssp S-GGGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHH-SSCGEEEEESS-
T ss_pred ccHHHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHh-hhcceEEeeCcc
Confidence 9999999999988762 2344566777983221 2 2233333 333344 55777
No 69
>PRK07680 late competence protein ComER; Validated
Probab=97.49 E-value=0.00054 Score=64.34 Aligned_cols=107 Identities=19% Similarity=0.223 Sum_probs=72.1
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCC---eEEEEeCCCCCCc-----eecCcccccCHHHhhhcCCCCEEEEecChhhHHHH
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGT---KMVGGVTPKKGGT-----EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA 115 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~---~iv~~VnP~~~g~-----~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~ 115 (331)
+|.|||+ |+||..+.+.|.+.|+ ..+...|++.... ...|+..+.+..++.. +.|++++++|+..+.++
T Consensus 2 ~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~--~aDiVilav~p~~~~~v 78 (273)
T PRK07680 2 NIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVIS--QSDLIFICVKPLDIYPL 78 (273)
T ss_pred EEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHH--hCCEEEEecCHHHHHHH
Confidence 5789998 9999999999988774 2233677754110 1126777778888766 68999999999999999
Q ss_pred HHHHHHc--CCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccC
Q 020101 116 ILEAMEA--ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN 158 (331)
Q Consensus 116 v~~~~~~--Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPn 158 (331)
++++... .-+.++-++.|.+-+. |.+.. ..+.++++ ||
T Consensus 79 l~~l~~~l~~~~~iis~~ag~~~~~---L~~~~-~~~~~r~~-p~ 118 (273)
T PRK07680 79 LQKLAPHLTDEHCLVSITSPISVEQ---LETLV-PCQVARII-PS 118 (273)
T ss_pred HHHHHhhcCCCCEEEEECCCCCHHH---HHHHc-CCCEEEEC-CC
Confidence 9886542 1245566777775333 33333 33345555 55
No 70
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=97.47 E-value=0.00041 Score=66.20 Aligned_cols=92 Identities=20% Similarity=0.141 Sum_probs=63.7
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-cee----------------cCcccccCHHHhhhcCCCCEEEE
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH----------------LGLPVFNTVAEAKAETKANASAI 105 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~i----------------~G~p~y~sl~dl~~~~~iDlaii 105 (331)
.+|+|+|+ |.||..+...|.+.|+++. .+++.... +.+ .+.....+++++.+ +.|++++
T Consensus 2 mkI~iiG~-G~mG~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~D~vi~ 77 (325)
T PRK00094 2 MKIAVLGA-GSWGTALAIVLARNGHDVT-LWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA--DADLILV 77 (325)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCEEE-EEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh--CCCEEEE
Confidence 36899999 9999999999999898854 55543210 000 13444567777766 7899999
Q ss_pred ecChhhHHHHHHHHHHc-CC-cEEEEecCCCChhH
Q 020101 106 YVPPPFAAAAILEAMEA-EL-DLVVCITEGIPQHD 138 (331)
Q Consensus 106 ~vp~~~~~~~v~~~~~~-Gi-~~ivi~t~G~~e~~ 138 (331)
++|+....++++++... .- +.+|.++.|+..+.
T Consensus 78 ~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~ 112 (325)
T PRK00094 78 AVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGT 112 (325)
T ss_pred eCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCC
Confidence 99999888888776653 21 34455666886543
No 71
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=97.44 E-value=0.002 Score=63.74 Aligned_cols=122 Identities=16% Similarity=0.232 Sum_probs=87.5
Q ss_pred CCCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccC-CCcHHHHHHHH
Q 020101 179 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIG-GTAEEDAAALI 257 (331)
Q Consensus 179 ~~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~-g~~~~~~~~f~ 257 (331)
..|+|++|+..|+++...++.+...|.-..-++-+|+.+ ..-.+.+.++-+.+||++++|++++-+. .+...-++.+.
T Consensus 255 l~G~i~~i~nG~Gl~~~t~D~~~~~g~~~aNplDlgg~a-~~~~~~~al~~l~~dp~vd~ilv~i~gg~~~~~~va~~i~ 333 (386)
T TIGR01016 255 LDGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDVGGGA-SAERVREALKLVLSDKSVKVVFINIFGGITRCDLVAKGLV 333 (386)
T ss_pred cCCcEEEEECCccHHHHHHHHHHHcCCCCCCcEEecCCC-CHHHHHHHHHHHHcCCCCCEEEEECCCCCCCHHHHHHHHH
Confidence 579999999999999999999999988887888877654 2556788999999999999999875531 11112233333
Q ss_pred HHhC-C--CCCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcC--CeEeCCHhHHHHHHH
Q 020101 258 KESG-T--EKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAG--VTVVESPAKIGAAML 321 (331)
Q Consensus 258 ~a~r-~--~KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aG--v~~v~~~~el~~~~~ 321 (331)
++.+ . +|||++.-.|. ..+.....|+++| +...+++++-...+-
T Consensus 334 ~a~~~~~~~kPvvv~~~g~--------------------~~~~~~~~L~~~G~~ip~~~~~~~Av~~~~ 382 (386)
T TIGR01016 334 EALKEVGVNVPVVVRLEGT--------------------NVEEGKKILAESGLNIIFATSMEEAAEKAV 382 (386)
T ss_pred HHHHhcCCCCcEEEEeCCc--------------------cHHHHHHHHHHcCCCccccCCHHHHHHHHH
Confidence 4433 3 39997765441 2244567799999 888888887555544
No 72
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.43 E-value=0.0012 Score=61.72 Aligned_cols=95 Identities=20% Similarity=0.226 Sum_probs=69.2
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCC---eEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHH
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGT---KMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE 118 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~---~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~ 118 (331)
..+|+|||+ |+||..+.+.+.+.+. +-+...+|+. +. .+.....+..++.+ +.|++++++||....+++++
T Consensus 3 ~mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~~~~~~--~~-~~~~~~~~~~~~~~--~~D~Vilavkp~~~~~vl~~ 76 (260)
T PTZ00431 3 NIRVGFIGL-GKMGSALAYGIENSNIIGKENIYYHTPSK--KN-TPFVYLQSNEELAK--TCDIIVLAVKPDLAGKVLLE 76 (260)
T ss_pred CCEEEEECc-cHHHHHHHHHHHhCCCCCcceEEEECCCh--hc-CCeEEeCChHHHHH--hCCEEEEEeCHHHHHHHHHH
Confidence 357999999 9999999999887652 2233778765 22 24444556666665 68999999999999999998
Q ss_pred HHHc-CCcEEEEecCCCChhHHHHH
Q 020101 119 AMEA-ELDLVVCITEGIPQHDMVRV 142 (331)
Q Consensus 119 ~~~~-Gi~~ivi~t~G~~e~~~~~l 142 (331)
+... +-+.+|....|++.+..+++
T Consensus 77 i~~~l~~~~iIS~~aGi~~~~l~~~ 101 (260)
T PTZ00431 77 IKPYLGSKLLISICGGLNLKTLEEM 101 (260)
T ss_pred HHhhccCCEEEEEeCCccHHHHHHH
Confidence 7642 23566778889986665543
No 73
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.39 E-value=0.0014 Score=61.89 Aligned_cols=93 Identities=18% Similarity=0.265 Sum_probs=67.0
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcC----CeEEEEeCCCCCCc--e----ecCcccccCHHHhhhcCCCCEEEEecChhhHH
Q 020101 44 RVICQGITGKNGTFHTEQAIEYG----TKMVGGVTPKKGGT--E----HLGLPVFNTVAEAKAETKANASAIYVPPPFAA 113 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g----~~iv~~VnP~~~g~--~----i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~ 113 (331)
+|.|||+ |+||+.+.+.+.+.| .+++ .++++.... . ..+..+..+..++.+ +.|++++++|++.+.
T Consensus 3 ~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~-~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~--~aDvVilavpp~~~~ 78 (277)
T PRK06928 3 KIGFIGY-GSMADMIATKLLETEVATPEEII-LYSSSKNEHFNQLYDKYPTVELADNEAEIFT--KCDHSFICVPPLAVL 78 (277)
T ss_pred EEEEECc-cHHHHHHHHHHHHCCCCCcccEE-EEeCCcHHHHHHHHHHcCCeEEeCCHHHHHh--hCCEEEEecCHHHHH
Confidence 5889998 999999999998876 4565 566543101 1 113444567777766 789999999999999
Q ss_pred HHHHHHHH---cCCcEEEEecCCCChhHHHH
Q 020101 114 AAILEAME---AELDLVVCITEGIPQHDMVR 141 (331)
Q Consensus 114 ~~v~~~~~---~Gi~~ivi~t~G~~e~~~~~ 141 (331)
++++++.. .+ +.++.++.|++.+++++
T Consensus 79 ~vl~~l~~~l~~~-~~ivS~~aGi~~~~l~~ 108 (277)
T PRK06928 79 PLLKDCAPVLTPD-RHVVSIAAGVSLDDLLE 108 (277)
T ss_pred HHHHHHHhhcCCC-CEEEEECCCCCHHHHHH
Confidence 99988754 23 34566888998776554
No 74
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=97.38 E-value=0.00094 Score=63.25 Aligned_cols=105 Identities=11% Similarity=0.073 Sum_probs=74.0
Q ss_pred EEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce--ecCcccccCHHHhhhcCCCCEEEEecChhh-HHHHH---HHH
Q 020101 47 CQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAI---LEA 119 (331)
Q Consensus 47 IvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~--i~G~p~y~sl~dl~~~~~iDlaii~vp~~~-~~~~v---~~~ 119 (331)
+||. |+||..+.++|.+.|++++ ..|+.... +. ..|.....+.+++.+ +.|++++++|+.. +.+++ +..
T Consensus 1 ~IGl-G~mG~~mA~~L~~~G~~V~-v~dr~~~~~~~l~~~g~~~~~s~~~~~~--~advVil~vp~~~~~~~v~~g~~~l 76 (288)
T TIGR01692 1 FIGL-GNMGGPMAANLLKAGHPVR-VFDLFPDAVEEAVAAGAQAAASPAEAAE--GADRVITMLPAGQHVISVYSGDEGI 76 (288)
T ss_pred CCcc-cHhHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHHcCCeecCCHHHHHh--cCCEEEEeCCChHHHHHHHcCcchH
Confidence 4788 9999999999999999866 66766411 11 246667778888887 7899999999844 45555 344
Q ss_pred HHc-CCcEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101 120 MEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156 (331)
Q Consensus 120 ~~~-Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG 156 (331)
... .-..+|+-.++++.+..+++.+.+ +++|++++.
T Consensus 77 ~~~~~~g~~vid~st~~p~~~~~~~~~~-~~~g~~~vd 113 (288)
T TIGR01692 77 LPKVAKGSLLIDCSTIDPDSARKLAELA-AAHGAVFMD 113 (288)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHH-HHcCCcEEE
Confidence 432 223455556677777777887777 677888764
No 75
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=97.37 E-value=0.0032 Score=62.31 Aligned_cols=122 Identities=17% Similarity=0.248 Sum_probs=86.3
Q ss_pred CCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEcc-CCCcHHHHHHHHH
Q 020101 180 PGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEI-GGTAEEDAAALIK 258 (331)
Q Consensus 180 ~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~-~g~~~~~~~~f~~ 258 (331)
.|+|++|+.+|+++...++.+...|....-.+-+|..+ ..-.+.+.|+.+.+||++.+|++.+=+ ......-++.+.+
T Consensus 256 ~~~i~ii~ng~G~~~~~~D~l~~~g~~~~NPvDl~g~~-~~e~~~~aL~~l~~d~~vd~vlv~~~~~~~~~~~va~~i~~ 334 (388)
T PRK00696 256 DGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDVGGGA-TAERVAEAFKIILSDPNVKAILVNIFGGITRCDVIAEGIIA 334 (388)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCCcCCeEEecCCC-CHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 58999999999999999999998988666677765543 355678899999999999999876432 1111122333333
Q ss_pred HhC---CCCCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcC--CeEeCCHhHHHHHHHH
Q 020101 259 ESG---TEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAG--VTVVESPAKIGAAMLE 322 (331)
Q Consensus 259 a~r---~~KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aG--v~~v~~~~el~~~~~a 322 (331)
+.+ ..|||++.-.| . ..+.....|+++| +...+++++-..++..
T Consensus 335 ~~~~~~~~kPvv~~~~g-~-------------------~~~~~~~~L~~~Gi~ip~f~~pe~A~~al~~ 383 (388)
T PRK00696 335 AVKEVGVTVPLVVRLEG-T-------------------NVELGKKILAESGLNIIAADTLDDAAQKAVE 383 (388)
T ss_pred HHHhcCCCCcEEEEeCC-C-------------------CHHHHHHHHHHCCCCceecCCHHHHHHHHHH
Confidence 333 47999766544 1 1244567799999 8899999987666653
No 76
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=97.37 E-value=0.00056 Score=66.04 Aligned_cols=116 Identities=22% Similarity=0.310 Sum_probs=78.3
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc--eecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHH-
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE- 118 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~--~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~- 118 (331)
..+|+|||. |++|+.++++|+..|++++...+|....+ ...|..++ +++|+.. ..|++++.+|.+....++.+
T Consensus 16 gKtVGIIG~-GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~-sl~Eaak--~ADVV~llLPd~~t~~V~~~e 91 (335)
T PRK13403 16 GKTVAVIGY-GSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVM-SVSEAVR--TAQVVQMLLPDEQQAHVYKAE 91 (335)
T ss_pred cCEEEEEeE-cHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEEC-CHHHHHh--cCCEEEEeCCChHHHHHHHHH
Confidence 455788999 99999999999999999874444432101 13466544 8999988 78999999998777777643
Q ss_pred HHH-cCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCccc
Q 020101 119 AME-AELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIK 164 (331)
Q Consensus 119 ~~~-~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~ 164 (331)
... ..-..+++|+.||+-.-. .+. - -+.-++-++.|-+.|-..
T Consensus 92 il~~MK~GaiL~f~hgfni~~~-~i~-p-p~~vdv~mvaPKgpG~~v 135 (335)
T PRK13403 92 VEENLREGQMLLFSHGFNIHFG-QIN-P-PSYVDVAMVAPKSPGHLV 135 (335)
T ss_pred HHhcCCCCCEEEECCCcceecC-cee-C-CCCCeEEEECCCCCChHH
Confidence 332 344567889999974321 111 0 134445677888777443
No 77
>PLN02688 pyrroline-5-carboxylate reductase
Probab=97.36 E-value=0.001 Score=61.93 Aligned_cols=93 Identities=18% Similarity=0.255 Sum_probs=67.6
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCC----eEEEEe-CCCCCCce---ecCcccccCHHHhhhcCCCCEEEEecChhhHHHH
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGT----KMVGGV-TPKKGGTE---HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA 115 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~----~iv~~V-nP~~~g~~---i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~ 115 (331)
+|.+||+ |+||..+.+.|.+.|+ +++ .. |++....+ -.|+....+..++.+ +.|++++++|++.+.++
T Consensus 2 kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~-v~~~r~~~~~~~~~~~g~~~~~~~~e~~~--~aDvVil~v~~~~~~~v 77 (266)
T PLN02688 2 RVGFIGA-GKMAEAIARGLVASGVVPPSRIS-TADDSNPARRDVFQSLGVKTAASNTEVVK--SSDVIILAVKPQVVKDV 77 (266)
T ss_pred eEEEECC-cHHHHHHHHHHHHCCCCCcceEE-EEeCCCHHHHHHHHHcCCEEeCChHHHHh--cCCEEEEEECcHHHHHH
Confidence 5889998 9999999999998887 665 55 76542111 247777788888776 68999999999999999
Q ss_pred HHHHHHc-CC-cEEEEecCCCChhHHH
Q 020101 116 ILEAMEA-EL-DLVVCITEGIPQHDMV 140 (331)
Q Consensus 116 v~~~~~~-Gi-~~ivi~t~G~~e~~~~ 140 (331)
++++... .- +.+|-.+.|.+.++.+
T Consensus 78 l~~l~~~~~~~~~iIs~~~g~~~~~l~ 104 (266)
T PLN02688 78 LTELRPLLSKDKLLVSVAAGITLADLQ 104 (266)
T ss_pred HHHHHhhcCCCCEEEEecCCCcHHHHH
Confidence 8877542 22 3344456787655544
No 78
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.33 E-value=0.0013 Score=62.14 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=75.6
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCC----eEEEEeCCCCCC-ce---ecCcccccCHHHhhhcCCCCEEEEecChhhHHH
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGT----KMVGGVTPKKGG-TE---HLGLPVFNTVAEAKAETKANASAIYVPPPFAAA 114 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~----~iv~~VnP~~~g-~~---i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~ 114 (331)
.+|.+||+ |+||..+.+.|.+.|+ +++ ..|++... +. -.|+..+.+..++.. +.|++++++||+...+
T Consensus 3 ~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~-v~~r~~~~~~~l~~~~g~~~~~~~~e~~~--~aDiIiLavkP~~~~~ 78 (272)
T PRK12491 3 KQIGFIGC-GNMGIAMIGGMINKNIVSPDQII-CSDLNVSNLKNASDKYGITITTNNNEVAN--SADILILSIKPDLYSS 78 (272)
T ss_pred CeEEEECc-cHHHHHHHHHHHHCCCCCCceEE-EECCCHHHHHHHHHhcCcEEeCCcHHHHh--hCCEEEEEeChHHHHH
Confidence 46889999 9999999999998774 344 77876521 11 246667778888776 6899999999999999
Q ss_pred HHHHHHHc--CCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCC
Q 020101 115 AILEAMEA--ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNC 159 (331)
Q Consensus 115 ~v~~~~~~--Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc 159 (331)
++++.... +=+.++=+..|++-++++++.. ....+-=+-||.
T Consensus 79 vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~---~~~~vvR~MPN~ 122 (272)
T PRK12491 79 VINQIKDQIKNDVIVVTIAAGKSIKSTENEFD---RKLKVIRVMPNT 122 (272)
T ss_pred HHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcC---CCCcEEEECCCh
Confidence 99887642 2234454778998776654321 122343345884
No 79
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=97.31 E-value=0.0015 Score=62.25 Aligned_cols=109 Identities=14% Similarity=0.150 Sum_probs=72.1
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc-e--ecCcccccCHHHhhhcCCCCEEEEecChhh-HHHHHH--
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-E--HLGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAIL-- 117 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~-~--i~G~p~y~sl~dl~~~~~iDlaii~vp~~~-~~~~v~-- 117 (331)
+|.|||. |+||....+++.+.|+++. .+|++...- . -.|.....+..++.+ +.|++++++|++. +..++.
T Consensus 3 ~Ig~IGl-G~mG~~mA~~l~~~G~~V~-v~d~~~~~~~~~~~~g~~~~~s~~~~~~--~aDvVi~~vp~~~~~~~vl~~~ 78 (296)
T PRK15461 3 AIAFIGL-GQMGSPMASNLLKQGHQLQ-VFDVNPQAVDALVDKGATPAASPAQAAA--GAEFVITMLPNGDLVRSVLFGE 78 (296)
T ss_pred eEEEEee-CHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHcCCcccCCHHHHHh--cCCEEEEecCCHHHHHHHHcCc
Confidence 6888999 9999999999999999876 777765211 1 236667778888877 7899999999986 444432
Q ss_pred -HHHHc-CC-cEEEEecCCCChhHHHHHHHHHhccCCcEEE-ccC
Q 020101 118 -EAMEA-EL-DLVVCITEGIPQHDMVRVKAALNNQSKTRLV-GPN 158 (331)
Q Consensus 118 -~~~~~-Gi-~~ivi~t~G~~e~~~~~l~~~a~~~~gi~vi-GPn 158 (331)
.+... .. +.++..+++ +.+..+++.+.+ ++.|++++ .|-
T Consensus 79 ~~i~~~l~~g~lvid~sT~-~p~~~~~l~~~l-~~~g~~~ldapV 121 (296)
T PRK15461 79 NGVCEGLSRDALVIDMSTI-HPLQTDKLIADM-QAKGFSMMDVPV 121 (296)
T ss_pred ccHhhcCCCCCEEEECCCC-CHHHHHHHHHHH-HHcCCcEEEccC
Confidence 12221 11 233444444 455556666665 57787765 444
No 80
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.29 E-value=0.002 Score=62.23 Aligned_cols=113 Identities=19% Similarity=0.189 Sum_probs=77.3
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCCe-EEEEe-------------CCCCCCc--eecCcccccCHHHhhhcCCCCEEEEe
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGTK-MVGGV-------------TPKKGGT--EHLGLPVFNTVAEAKAETKANASAIY 106 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~~-iv~~V-------------nP~~~g~--~i~G~p~y~sl~dl~~~~~iDlaii~ 106 (331)
.+|+|+|+ |.+|+.+.+.+.+.|.+ ..+.- ||++-.. --.++...++++++.+ +.|++++.
T Consensus 2 ~kI~ViGa-GswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~--~ad~iv~a 78 (329)
T COG0240 2 MKIAVIGA-GSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALD--GADIIVIA 78 (329)
T ss_pred ceEEEEcC-ChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHh--cCCEEEEE
Confidence 46888999 99999999999998876 33443 3333210 0134566778999987 79999999
Q ss_pred cChhhHHHHHHHHH---HcCCcEEEEecCCCChhHHHHHHHHHhccCC---cE-EEccCC
Q 020101 107 VPPPFAAAAILEAM---EAELDLVVCITEGIPQHDMVRVKAALNNQSK---TR-LVGPNC 159 (331)
Q Consensus 107 vp~~~~~~~v~~~~---~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~g---i~-viGPnc 159 (331)
+|.....++++... ..+.+. ++.+-|+..+..+.+-+.+.+..+ +- +.|||-
T Consensus 79 vPs~~~r~v~~~l~~~l~~~~~i-v~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~ 137 (329)
T COG0240 79 VPSQALREVLRQLKPLLLKDAII-VSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSF 137 (329)
T ss_pred CChHHHHHHHHHHhhhccCCCeE-EEEeccccCCCcchHHHHHHHHcCCCeEEEEECccH
Confidence 99999999998864 455555 557889966543333333322222 33 668885
No 81
>PLN02712 arogenate dehydrogenase
Probab=97.27 E-value=0.0019 Score=68.36 Aligned_cols=80 Identities=11% Similarity=0.189 Sum_probs=62.3
Q ss_pred CCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc--eecCcccccCHHHhhhcCCCCEEEEecChhhHHHHH
Q 020101 39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI 116 (331)
Q Consensus 39 ~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~--~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v 116 (331)
..+..+|+|||+ |+||+.+.+.+.+.|++++ ++|+....+ ...|+..+.+++++..+ ..|++++++|+....+++
T Consensus 366 ~~~~~kIgIIGl-G~mG~slA~~L~~~G~~V~-~~dr~~~~~~a~~~Gv~~~~~~~el~~~-~aDvVILavP~~~~~~vi 442 (667)
T PLN02712 366 DGSKLKIAIVGF-GNFGQFLAKTMVKQGHTVL-AYSRSDYSDEAQKLGVSYFSDADDLCEE-HPEVILLCTSILSTEKVL 442 (667)
T ss_pred CCCCCEEEEEec-CHHHHHHHHHHHHCcCEEE-EEECChHHHHHHHcCCeEeCCHHHHHhc-CCCEEEECCChHHHHHHH
Confidence 446788999998 9999999999999898877 667653101 12466677888887642 489999999999999999
Q ss_pred HHHHH
Q 020101 117 LEAME 121 (331)
Q Consensus 117 ~~~~~ 121 (331)
++...
T Consensus 443 ~~l~~ 447 (667)
T PLN02712 443 KSLPF 447 (667)
T ss_pred HHHHH
Confidence 88764
No 82
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.26 E-value=0.00092 Score=65.28 Aligned_cols=90 Identities=16% Similarity=0.193 Sum_probs=65.3
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCC-CCcee---c----Cc--cccc--CHHHhhhcCCCCEEEEecCh
Q 020101 43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKK-GGTEH---L----GL--PVFN--TVAEAKAETKANASAIYVPP 109 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~-~g~~i---~----G~--p~y~--sl~dl~~~~~iDlaii~vp~ 109 (331)
++|+|+||||..|+.+++.|.++ ++++++.+..+. .|+.+ . +. ..+. +.+++.+ ++|++++++|.
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~DvVf~alP~ 78 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAE--DADVVFLALPH 78 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhc--CCCEEEECCCc
Confidence 47899999999999999999987 678876655443 23322 1 11 1133 3445543 69999999999
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCC
Q 020101 110 PFAAAAILEAMEAELDLVVCITEGIP 135 (331)
Q Consensus 110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~ 135 (331)
..+.+.+.++.++|.+. |-.++.|.
T Consensus 79 ~~s~~~~~~~~~~G~~V-IDlS~~fR 103 (346)
T TIGR01850 79 GVSAELAPELLAAGVKV-IDLSADFR 103 (346)
T ss_pred hHHHHHHHHHHhCCCEE-EeCChhhh
Confidence 99999999999999665 55677664
No 83
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.24 E-value=0.0016 Score=60.58 Aligned_cols=109 Identities=7% Similarity=0.003 Sum_probs=70.8
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeE--EEEeCCCCCC-ce----ecCcccccCHHHhhhcCCCCEEEEecChhhHHHHH
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKM--VGGVTPKKGG-TE----HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI 116 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~i--v~~VnP~~~g-~~----i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v 116 (331)
+|.|||+ |+||+.+.+.+.+.|+++ +...|++... +. ..+...+.+.+++.+ +.|++++++|++...+++
T Consensus 2 ~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~--~aDvVilav~p~~~~~vl 78 (258)
T PRK06476 2 KIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVD--RSDVVFLAVRPQIAEEVL 78 (258)
T ss_pred eEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHH--hCCEEEEEeCHHHHHHHH
Confidence 5889998 999999999998877542 3355664311 11 225677788888876 689999999999999888
Q ss_pred HHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccC
Q 020101 117 LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN 158 (331)
Q Consensus 117 ~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPn 158 (331)
+++.-..=+.++-...|.+.+..+++.. ....+-..-||
T Consensus 79 ~~l~~~~~~~vis~~ag~~~~~l~~~~~---~~~~~~r~~P~ 117 (258)
T PRK06476 79 RALRFRPGQTVISVIAATDRAALLEWIG---HDVKLVRAIPL 117 (258)
T ss_pred HHhccCCCCEEEEECCCCCHHHHHHHhC---CCCCEEEECCC
Confidence 7752112234444566776555554321 11233345577
No 84
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=97.23 E-value=0.0015 Score=62.25 Aligned_cols=107 Identities=16% Similarity=0.175 Sum_probs=72.2
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEE-EEeCCCCCCce--ecCcccccCHHHhhhcCCCCEEEEecChhhH-HHHHHH-
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMV-GGVTPKKGGTE--HLGLPVFNTVAEAKAETKANASAIYVPPPFA-AAAILE- 118 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv-~~VnP~~~g~~--i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~-~~~v~~- 118 (331)
+|.+||. |+||....++|.+.|+++. +-.+|+. +. -.|.....+..++.+ +.|++++++|.+.. .+++..
T Consensus 2 ~Ig~IGl-G~MG~~ma~~L~~~G~~v~v~~~~~~~--~~~~~~g~~~~~s~~~~~~--~advVi~~v~~~~~v~~v~~~~ 76 (292)
T PRK15059 2 KLGFIGL-GIMGTPMAINLARAGHQLHVTTIGPVA--DELLSLGAVSVETARQVTE--ASDIIFIMVPDTPQVEEVLFGE 76 (292)
T ss_pred eEEEEcc-CHHHHHHHHHHHHCCCeEEEEeCCHhH--HHHHHcCCeecCCHHHHHh--cCCEEEEeCCChHHHHHHHcCC
Confidence 5889999 9999999999999999864 2344432 22 246777788888876 78999999998743 443321
Q ss_pred --HHHc-CCcEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101 119 --AMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156 (331)
Q Consensus 119 --~~~~-Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG 156 (331)
+... .-..+|+-.+..+.+..+++.+.+ +++|+.++.
T Consensus 77 ~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~-~~~G~~~vd 116 (292)
T PRK15059 77 NGCTKASLKGKTIVDMSSISPIETKRFARQV-NELGGDYLD 116 (292)
T ss_pred cchhccCCCCCEEEECCCCCHHHHHHHHHHH-HHcCCCEEE
Confidence 1221 122345555566667777777776 677877554
No 85
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=97.18 E-value=0.0036 Score=59.52 Aligned_cols=117 Identities=21% Similarity=0.237 Sum_probs=82.4
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce---ecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHH-
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE- 118 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~---i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~- 118 (331)
+|++||. |.||....++|.+.|+++. ..|.+... .+ ..|...+.+..|..+ ..|++|.++|...+.+.+-.
T Consensus 2 kIafIGL-G~MG~pmA~~L~~aG~~v~-v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~--~aDvVitmv~~~~~V~~V~~g 77 (286)
T COG2084 2 KIAFIGL-GIMGSPMAANLLKAGHEVT-VYNRTPEKAAELLAAAGATVAASPAEAAA--EADVVITMLPDDAAVRAVLFG 77 (286)
T ss_pred eEEEEcC-chhhHHHHHHHHHCCCEEE-EEeCChhhhhHHHHHcCCcccCCHHHHHH--hCCEEEEecCCHHHHHHHHhC
Confidence 6889999 9999999999999999865 55544321 11 358899999988887 79999999998777665542
Q ss_pred ---HHH-cCCcEEEEecCCCChhHHHHHHHHHhccCCcEEE-ccCCCCcccC
Q 020101 119 ---AME-AELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV-GPNCPGVIKP 165 (331)
Q Consensus 119 ---~~~-~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~vi-GPnc~Gi~~p 165 (331)
..+ .....+||-.+-++.+..+++.+.+ ++.|+.++ .|=+-|....
T Consensus 78 ~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~-~~~G~~~lDAPVsGg~~~A 128 (286)
T COG2084 78 ENGLLEGLKPGAIVIDMSTISPETARELAAAL-AAKGLEFLDAPVSGGVPGA 128 (286)
T ss_pred ccchhhcCCCCCEEEECCCCCHHHHHHHHHHH-HhcCCcEEecCccCCchhh
Confidence 222 2234455544556677777888777 78887755 6665555443
No 86
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.12 E-value=0.0037 Score=63.00 Aligned_cols=109 Identities=15% Similarity=0.154 Sum_probs=70.9
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-c---eecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHH
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEA 119 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~ 119 (331)
+|+|||++|.||..+.+.+.+.|++++ .++++... . ...|+....+..+... +.|++++++|++...++++++
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V~-v~~r~~~~~~~~a~~~gv~~~~~~~e~~~--~aDvVIlavp~~~~~~vl~~l 78 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEVI-VTGRDPKKGKEVAKELGVEYANDNIDAAK--DADIVIISVPINVTEDVIKEV 78 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEEE-EEECChHHHHHHHHHcCCeeccCHHHHhc--cCCEEEEecCHHHHHHHHHHH
Confidence 688999779999999999999998865 55544310 0 1246665667777666 689999999999999988887
Q ss_pred HHc-CCcEEEEecCCCChhHHHHHHHHHhccCCcEEEcc
Q 020101 120 MEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGP 157 (331)
Q Consensus 120 ~~~-Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGP 157 (331)
... .-..+++-.........+.+.+.. ..+.++++-
T Consensus 79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~--~~~~~~V~~ 115 (437)
T PRK08655 79 APHVKEGSLLMDVTSVKERPVEAMEEYA--PEGVEILPT 115 (437)
T ss_pred HhhCCCCCEEEEcccccHHHHHHHHHhc--CCCCEEEEc
Confidence 653 223333322223333344444433 335666654
No 87
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.08 E-value=0.0026 Score=62.58 Aligned_cols=96 Identities=16% Similarity=0.125 Sum_probs=65.5
Q ss_pred CCCCeEEEEEcCCCCCCcHHHHHHHHcC-------Ce-EEEEeCCCCCC-------------ce-e------cCcccccC
Q 020101 39 VDKNTRVICQGITGKNGTFHTEQAIEYG-------TK-MVGGVTPKKGG-------------TE-H------LGLPVFNT 90 (331)
Q Consensus 39 ~~k~~~VaIvGasgk~G~~~~~~l~~~g-------~~-iv~~VnP~~~g-------------~~-i------~G~p~y~s 90 (331)
..+..+|+|+|+ |.+|+++...+.+.+ .+ ..+.-|+...+ .. . ..+....+
T Consensus 8 ~~~~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsd 86 (365)
T PTZ00345 8 RCGPLKVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSD 86 (365)
T ss_pred ccCCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecC
Confidence 345678999999 999999999888765 44 33455543100 00 1 12333456
Q ss_pred HHHhhhcCCCCEEEEecChhhHHHHHHHHHH--cC--CcEEEEecCCCChh
Q 020101 91 VAEAKAETKANASAIYVPPPFAAAAILEAME--AE--LDLVVCITEGIPQH 137 (331)
Q Consensus 91 l~dl~~~~~iDlaii~vp~~~~~~~v~~~~~--~G--i~~ivi~t~G~~e~ 137 (331)
++++.+ +.|++++++|+....++++++.. .- -..+|.++-|+..+
T Consensus 87 l~eav~--~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~ 135 (365)
T PTZ00345 87 LKEAVE--DADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVE 135 (365)
T ss_pred HHHHHh--cCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccC
Confidence 777766 78999999999999999999875 21 12456688898643
No 88
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.08 E-value=0.0035 Score=60.00 Aligned_cols=82 Identities=15% Similarity=0.114 Sum_probs=61.7
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHHHHc
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEA 122 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~ 122 (331)
.+|.|+|+ |+||+.+.+.|.+.|+++. ..|+.. . .+++++.+ +.|++++++|.+.+.++++.+...
T Consensus 5 m~I~iiG~-G~~G~~lA~~l~~~G~~V~-~~~r~~--~--------~~~~~~~~--~advvi~~vp~~~~~~v~~~l~~~ 70 (308)
T PRK14619 5 KTIAILGA-GAWGSTLAGLASANGHRVR-VWSRRS--G--------LSLAAVLA--DADVIVSAVSMKGVRPVAEQVQAL 70 (308)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCEEE-EEeCCC--C--------CCHHHHHh--cCCEEEEECChHHHHHHHHHHHHh
Confidence 56899999 9999999999999999876 777654 1 46777776 789999999999888888776542
Q ss_pred C--C-cEEEEecCCCChhH
Q 020101 123 E--L-DLVVCITEGIPQHD 138 (331)
Q Consensus 123 G--i-~~ivi~t~G~~e~~ 138 (331)
. - ..++..+.|+..+.
T Consensus 71 ~~~~~~ivi~~s~gi~~~~ 89 (308)
T PRK14619 71 NLPPETIIVTATKGLDPET 89 (308)
T ss_pred cCCCCcEEEEeCCcccCCC
Confidence 2 1 23444555776543
No 89
>PLN02712 arogenate dehydrogenase
Probab=97.07 E-value=0.0034 Score=66.46 Aligned_cols=77 Identities=12% Similarity=0.189 Sum_probs=59.6
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc--eecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHH
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE 118 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~--~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~ 118 (331)
+..+|+|||+ |+||+.+.+.+.+.|++++ ++++..... ...|+..+.+++++..+ +.|++++++|++...+++++
T Consensus 51 ~~~kIgIIG~-G~mG~slA~~L~~~G~~V~-~~dr~~~~~~A~~~Gv~~~~d~~e~~~~-~aDvViLavP~~~~~~vl~~ 127 (667)
T PLN02712 51 TQLKIAIIGF-GNYGQFLAKTLISQGHTVL-AHSRSDHSLAARSLGVSFFLDPHDLCER-HPDVILLCTSIISTENVLKS 127 (667)
T ss_pred CCCEEEEEcc-CHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHcCCEEeCCHHHHhhc-CCCEEEEcCCHHHHHHHHHh
Confidence 3467999998 9999999999999999876 566653111 13577777888886532 58999999999999999888
Q ss_pred HH
Q 020101 119 AM 120 (331)
Q Consensus 119 ~~ 120 (331)
..
T Consensus 128 l~ 129 (667)
T PLN02712 128 LP 129 (667)
T ss_pred hh
Confidence 64
No 90
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=97.07 E-value=0.0053 Score=60.60 Aligned_cols=81 Identities=14% Similarity=0.124 Sum_probs=61.0
Q ss_pred CCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHH
Q 020101 39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE 118 (331)
Q Consensus 39 ~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~ 118 (331)
.|...+|+|||+.|.||..+.+.+.+.|+++. ++|+.. +.+.+++.. +.|++++++|.+...+++++
T Consensus 95 ~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~-~~d~~~----------~~~~~~~~~--~aDlVilavP~~~~~~~~~~ 161 (374)
T PRK11199 95 NPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVR-ILEQDD----------WDRAEDILA--DAGMVIVSVPIHLTEEVIAR 161 (374)
T ss_pred CcccceEEEEcCCChhhHHHHHHHHHCCCeEE-EeCCCc----------chhHHHHHh--cCCEEEEeCcHHHHHHHHHH
Confidence 35667899999669999999999999999866 777642 135566665 78999999999999999988
Q ss_pred HHHcCCcEEEEecCC
Q 020101 119 AMEAELDLVVCITEG 133 (331)
Q Consensus 119 ~~~~Gi~~ivi~t~G 133 (331)
.....-.. +++..|
T Consensus 162 l~~l~~~~-iv~Dv~ 175 (374)
T PRK11199 162 LPPLPEDC-ILVDLT 175 (374)
T ss_pred HhCCCCCc-EEEECC
Confidence 76643344 434443
No 91
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.07 E-value=0.0013 Score=57.08 Aligned_cols=86 Identities=21% Similarity=0.220 Sum_probs=60.6
Q ss_pred EEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccc-------cCHHHhhhcCCCCEEEEecC-----hhhH
Q 020101 45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVF-------NTVAEAKAETKANASAIYVP-----PPFA 112 (331)
Q Consensus 45 VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y-------~sl~dl~~~~~iDlaii~vp-----~~~~ 112 (331)
|+|+|+||..|+.+++.|.+.|+++++.+-....-++..++.+. .++.+... ++|.++.+.+ .+.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~--~~d~vi~~~~~~~~~~~~~ 78 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALK--GADAVIHAAGPPPKDVDAA 78 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHT--TSSEEEECCHSTTTHHHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhh--hcchhhhhhhhhccccccc
Confidence 67899999999999999999999988655322100111222222 23555555 7999999987 4556
Q ss_pred HHHHHHHHHcCCcEEEEecC
Q 020101 113 AAAILEAMEAELDLVVCITE 132 (331)
Q Consensus 113 ~~~v~~~~~~Gi~~ivi~t~ 132 (331)
..+++.|.+.|++.+|++++
T Consensus 79 ~~~~~a~~~~~~~~~v~~s~ 98 (183)
T PF13460_consen 79 KNIIEAAKKAGVKRVVYLSS 98 (183)
T ss_dssp HHHHHHHHHTTSSEEEEEEE
T ss_pred ccccccccccccccceeeec
Confidence 77778888899988887664
No 92
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=97.05 E-value=0.0033 Score=64.23 Aligned_cols=115 Identities=13% Similarity=0.025 Sum_probs=75.6
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce--e-----cCcc---cccCHHHhhhc-CCCCEEEEecChhh
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--H-----LGLP---VFNTVAEAKAE-TKANASAIYVPPPF 111 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~--i-----~G~p---~y~sl~dl~~~-~~iDlaii~vp~~~ 111 (331)
.+|.+||. |.||+...++|.+.||++. +.|.....-+ . .|.. .+.+++|+.+. ..+|++++++|...
T Consensus 7 ~~IG~IGL-G~MG~~mA~nL~~~G~~V~-V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~ 84 (493)
T PLN02350 7 SRIGLAGL-AVMGQNLALNIAEKGFPIS-VYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGA 84 (493)
T ss_pred CCEEEEee-HHHHHHHHHHHHhCCCeEE-EECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcH
Confidence 35889999 9999999999999999976 6677642111 1 1433 67789998862 23999999999877
Q ss_pred HHHHH-HHHHHc-CCcEEEE-ecCCCChhHHHHHHHHHhccCCcEEEccCCCC
Q 020101 112 AAAAI-LEAMEA-ELDLVVC-ITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG 161 (331)
Q Consensus 112 ~~~~v-~~~~~~-Gi~~ivi-~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~G 161 (331)
+.+.+ +.+... ....+|| +++. ..++.+++.+.+ ++.|+++++-.-.|
T Consensus 85 aV~~Vi~gl~~~l~~G~iiID~sT~-~~~~t~~~~~~l-~~~Gi~fldapVSG 135 (493)
T PLN02350 85 PVDQTIKALSEYMEPGDCIIDGGNE-WYENTERRIKEA-AEKGLLYLGMGVSG 135 (493)
T ss_pred HHHHHHHHHHhhcCCCCEEEECCCC-CHHHHHHHHHHH-HHcCCeEEeCCCcC
Confidence 65544 444433 1223343 3332 345555666666 67899988755444
No 93
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.04 E-value=0.004 Score=59.47 Aligned_cols=111 Identities=21% Similarity=0.221 Sum_probs=68.5
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCCCCCCce---ecCc--ccccCHHHhhhcCCCCEEEEecChhhHHH
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKGGTE---HLGL--PVFNTVAEAKAETKANASAIYVPPPFAAA 114 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP~~~g~~---i~G~--p~y~sl~dl~~~~~iDlaii~vp~~~~~~ 114 (331)
..+|+|||+ |.+|..+.+.+.+.|+ +++ .+|++....+ -.|. ....+.++..+ +.|++|+++|+....+
T Consensus 6 ~~~I~IIG~-G~mG~sla~~l~~~g~~~~V~-~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~--~aDvViiavp~~~~~~ 81 (307)
T PRK07502 6 FDRVALIGI-GLIGSSLARAIRRLGLAGEIV-GADRSAETRARARELGLGDRVTTSAAEAVK--GADLVILCVPVGASGA 81 (307)
T ss_pred CcEEEEEee-CHHHHHHHHHHHhcCCCcEEE-EEECCHHHHHHHHhCCCCceecCCHHHHhc--CCCEEEECCCHHHHHH
Confidence 356899998 9999999999988875 554 7776541001 1232 23456666665 7899999999998888
Q ss_pred HHHHHHHc-CCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccC
Q 020101 115 AILEAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN 158 (331)
Q Consensus 115 ~v~~~~~~-Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPn 158 (331)
++++.... .-+.+++-..+...+-.+++.+.. ..++++++-.
T Consensus 82 v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~--~~~~~~v~~h 124 (307)
T PRK07502 82 VAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHL--PEGVHFIPGH 124 (307)
T ss_pred HHHHHHhhCCCCCEEEeCccchHHHHHHHHHhC--CCCCeEEeCC
Confidence 87776542 233344333344333333333322 3456777643
No 94
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=96.98 E-value=0.029 Score=57.71 Aligned_cols=209 Identities=13% Similarity=0.136 Sum_probs=127.0
Q ss_pred CCCeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCC--CCceecCcccccC--HHHhhhcCCCCEEEEecCh---hh
Q 020101 40 DKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKK--GGTEHLGLPVFNT--VAEAKAETKANASAIYVPP---PF 111 (331)
Q Consensus 40 ~k~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~--~g~~i~G~p~y~s--l~dl~~~~~iDlaii~vp~---~~ 111 (331)
+...++.|+|| |..|..+++.++.. .|..++.+|+.. .|.++.|+|+|.+ +.++.++..+|.++++.|. +.
T Consensus 114 ~~~~r~lIiGA-G~ag~~l~r~~~~~~~~~pV~fiDdd~~~~g~~i~Gv~V~g~~~i~~~v~~~~~~~iiiAips~~~~~ 192 (588)
T COG1086 114 DNRIRLLIIGA-GSAGDLLLRALRRDPEYTPVAFLDDDPDLTGMKIRGVPVLGRIEIERVVEELGIQLILIAIPSASQEE 192 (588)
T ss_pred cCCCceEEEcC-chHHHHHHHHHHhCCCcceEEEECCChhhcCCEEeceeeechhHHHHHHHHcCCceEEEecCCCCHHH
Confidence 45577889999 88999999988875 588998888654 4678999999986 5555666789999998886 45
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcE-EEccCCCCcccCCCcccccCCCCCCCCCCEEEEe-cC
Q 020101 112 AAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVS-RS 189 (331)
Q Consensus 112 ~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~-viGPnc~Gi~~p~~~~~~~~~~~~~~~G~valis-QS 189 (331)
..++++.|.+.|++.-.+ +.+.+ ..+..... |+-.+. ++|=. |-..+.... ...-.|..=+|+ --
T Consensus 193 ~~~i~~~l~~~~~~v~~l--P~~~~--l~~~~~~l-reI~ieDLLgR~------pV~~d~~~i--~~~~~gK~vLVTGag 259 (588)
T COG1086 193 RRRILLRLARTGIAVRIL--PQLTD--LKDLNGQL-REIEIEDLLGRP------PVALDTELI--GAMLTGKTVLVTGGG 259 (588)
T ss_pred HHHHHHHHHhcCCcEEec--CcHHH--HHHhcccc-ccCCHHHHhCCC------CCCCCHHHH--HhHcCCCEEEEeCCC
Confidence 667889999999776443 33321 11000000 111111 22211 000111100 012345555555 45
Q ss_pred hHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhCCCCCEEEE
Q 020101 190 GTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAF 269 (331)
Q Consensus 190 G~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r~~KPVvv~ 269 (331)
|++++++.....+. +..+.+=.+.. ....-++-..|.+.-...-+..|+=. .+|.++..++.+..||=+++
T Consensus 260 GSiGsel~~qil~~--~p~~i~l~~~~---E~~~~~i~~el~~~~~~~~~~~~igd----VrD~~~~~~~~~~~kvd~Vf 330 (588)
T COG1086 260 GSIGSELCRQILKF--NPKEIILFSRD---EYKLYLIDMELREKFPELKLRFYIGD----VRDRDRVERAMEGHKVDIVF 330 (588)
T ss_pred CcHHHHHHHHHHhc--CCCEEEEecCc---hHHHHHHHHHHHhhCCCcceEEEecc----cccHHHHHHHHhcCCCceEE
Confidence 67889998877656 66776666654 22333444455553123334455554 67878888888877888888
Q ss_pred Ee
Q 020101 270 IA 271 (331)
Q Consensus 270 k~ 271 (331)
.+
T Consensus 331 HA 332 (588)
T COG1086 331 HA 332 (588)
T ss_pred Eh
Confidence 63
No 95
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=96.92 E-value=0.017 Score=57.46 Aligned_cols=124 Identities=16% Similarity=0.272 Sum_probs=85.0
Q ss_pred CCCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccC-CCcHHHHHHHH
Q 020101 179 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIG-GTAEEDAAALI 257 (331)
Q Consensus 179 ~~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~-g~~~~~~~~f~ 257 (331)
..|+|++|+-.++++...++.....|....-++-+|..+ ..-.+.+.++-+.+||++++|++.+-+. .....-++.+.
T Consensus 255 l~G~ig~i~nGaGl~m~t~D~i~~~gg~paNPlDlgg~a-~~e~~~~aL~~ll~Dp~VdaVlv~i~ggi~~~~~vA~~Ii 333 (392)
T PRK14046 255 LDGDIGCIVNGAGLAMATMDMIKLAGGEPANFLDVGGGA-SPERVAKAFRLVLSDRNVKAILVNIFAGINRCDWVAEGVV 333 (392)
T ss_pred cCCcEEEEeCCccHHHHHHHHHHhcCCCCcCCEEecCCC-CHHHHHHHHHHHHcCCCCCEEEEEcCCCCCCHHHHHHHHH
Confidence 569999999999999999999999988877788887654 3566788999999999999999865421 11112233333
Q ss_pred HHhC---CCCCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHH
Q 020101 258 KESG---TEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVF 324 (331)
Q Consensus 258 ~a~r---~~KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~~~~a~~ 324 (331)
++.+ .+|||++.-.|. ..+.....|+++|+. +...++|.++++...
T Consensus 334 ~a~~~~~~~kPvvv~l~G~--------------------~~e~~~~iL~~~Gip-vf~~~~~~~a~~~~v 382 (392)
T PRK14046 334 QAAREVGIDVPLVVRLAGT--------------------NVEEGRKILAESGLP-IITADTLAEAAEKAV 382 (392)
T ss_pred HHHHhcCCCCcEEEEcCCC--------------------CHHHHHHHHHHcCCC-eeecCCHHHHHHHHH
Confidence 4333 478996654441 234557778999963 244445555555433
No 96
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=96.91 E-value=0.0054 Score=62.31 Aligned_cols=113 Identities=13% Similarity=0.084 Sum_probs=72.6
Q ss_pred EEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-cee--c-----CcccccCHHHhhhc-CCCCEEEEecCh-hhHHH
Q 020101 45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--L-----GLPVFNTVAEAKAE-TKANASAIYVPP-PFAAA 114 (331)
Q Consensus 45 VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~i--~-----G~p~y~sl~dl~~~-~~iDlaii~vp~-~~~~~ 114 (331)
|.+||. |+||..++++|.+.|++++ ..|++... +.. . ++..+.+++++.+. .++|++++++|+ +.+.+
T Consensus 2 IG~IGL-G~MG~~mA~nL~~~G~~V~-v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~ 79 (467)
T TIGR00873 2 IGVIGL-AVMGSNLALNMADHGFTVS-VYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDA 79 (467)
T ss_pred EEEEee-HHHHHHHHHHHHhcCCeEE-EEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHH
Confidence 678999 9999999999999999876 66665421 111 1 25567788887643 258999999998 56666
Q ss_pred HHHHHHHc-CC-cEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCC
Q 020101 115 AILEAMEA-EL-DLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG 161 (331)
Q Consensus 115 ~v~~~~~~-Gi-~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~G 161 (331)
+++.+... .- +.++-.++....+.. +..+.+ ++.|+.+++-.-.|
T Consensus 80 Vi~~l~~~L~~g~iIID~gns~~~~t~-~~~~~l-~~~gi~fvdapVsG 126 (467)
T TIGR00873 80 VINQLLPLLEKGDIIIDGGNSHYPDTE-RRYKEL-KAKGILFVGSGVSG 126 (467)
T ss_pred HHHHHHhhCCCCCEEEECCCcCHHHHH-HHHHHH-HhcCCEEEcCCCCC
Confidence 76666543 12 333334443433333 334444 57788888655444
No 97
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.90 E-value=0.0031 Score=61.42 Aligned_cols=92 Identities=11% Similarity=0.079 Sum_probs=65.2
Q ss_pred CCCeEEEEEcCCCCCCcHHHHHHHHcC---CeEEEEeCCCCCCceec--Cc-cccc--CHHHhhhcCCCCEEEEecChhh
Q 020101 40 DKNTRVICQGITGKNGTFHTEQAIEYG---TKMVGGVTPKKGGTEHL--GL-PVFN--TVAEAKAETKANASAIYVPPPF 111 (331)
Q Consensus 40 ~k~~~VaIvGasgk~G~~~~~~l~~~g---~~iv~~VnP~~~g~~i~--G~-p~y~--sl~dl~~~~~iDlaii~vp~~~ 111 (331)
++.++|+|+||||..|+.+++.|.+.+ .++++..+.+..|+.+. |. -.+. +..++ + ++|++++++|+..
T Consensus 2 ~~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~~-~--~vD~vFla~p~~~ 78 (336)
T PRK05671 2 SQPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFDF-S--QVQLAFFAAGAAV 78 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHHh-c--CCCEEEEcCCHHH
Confidence 455889999999999999999999643 34555566655554331 21 0111 12232 3 7999999999999
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCC
Q 020101 112 AAAAILEAMEAELDLVVCITEGIP 135 (331)
Q Consensus 112 ~~~~v~~~~~~Gi~~ivi~t~G~~ 135 (331)
..+.+.++.++|++. |-.++.|.
T Consensus 79 s~~~v~~~~~~G~~V-IDlS~~fR 101 (336)
T PRK05671 79 SRSFAEKARAAGCSV-IDLSGALP 101 (336)
T ss_pred HHHHHHHHHHCCCeE-EECchhhc
Confidence 999999999999875 66676664
No 98
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.89 E-value=0.0078 Score=58.83 Aligned_cols=113 Identities=13% Similarity=0.118 Sum_probs=75.4
Q ss_pred CCCeEEEEEcCCCCCCcHHHHHHHH-cCCe---EEEEeCCCCCCcee--cC--ccccc-CHHHhhhcCCCCEEEEecChh
Q 020101 40 DKNTRVICQGITGKNGTFHTEQAIE-YGTK---MVGGVTPKKGGTEH--LG--LPVFN-TVAEAKAETKANASAIYVPPP 110 (331)
Q Consensus 40 ~k~~~VaIvGasgk~G~~~~~~l~~-~g~~---iv~~VnP~~~g~~i--~G--~p~y~-sl~dl~~~~~iDlaii~vp~~ 110 (331)
+++++|+|+||||-.|+.+++.|.+ ..|+ +...-..+..|+.+ .| +.+.+ +.+++ . ++|+++.++|.+
T Consensus 3 ~~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~~-~--~~Divf~a~~~~ 79 (347)
T PRK06728 3 EKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINSF-E--GVDIAFFSAGGE 79 (347)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHHh-c--CCCEEEECCChH
Confidence 4568999999999999999999986 4665 55445555555543 12 22222 23333 3 699999999999
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCChh----------HHHHHHHHHhccCCcEEEccCCCC
Q 020101 111 FAAAAILEAMEAELDLVVCITEGIPQH----------DMVRVKAALNNQSKTRLVGPNCPG 161 (331)
Q Consensus 111 ~~~~~v~~~~~~Gi~~ivi~t~G~~e~----------~~~~l~~~a~~~~gi~viGPnc~G 161 (331)
...+.+.++.++|.+. |-.++-|..+ ..+.+. ...+ .|-.|||.-
T Consensus 80 ~s~~~~~~~~~~G~~V-ID~Ss~fR~~~~vplvvPEvN~e~i~----~~~~-iIanPnC~t 134 (347)
T PRK06728 80 VSRQFVNQAVSSGAIV-IDNTSEYRMAHDVPLVVPEVNAHTLK----EHKG-IIAVPNCSA 134 (347)
T ss_pred HHHHHHHHHHHCCCEE-EECchhhcCCCCCCeEeCCcCHHHHh----ccCC-EEECCCCHH
Confidence 9999999999999764 5456555322 122232 2234 588899954
No 99
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=96.89 E-value=0.0056 Score=59.76 Aligned_cols=91 Identities=16% Similarity=0.140 Sum_probs=61.5
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcC--------CeEE-EEeCC-------------CCCCce-ecC------cccccCHHHh
Q 020101 44 RVICQGITGKNGTFHTEQAIEYG--------TKMV-GGVTP-------------KKGGTE-HLG------LPVFNTVAEA 94 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g--------~~iv-~~VnP-------------~~~g~~-i~G------~p~y~sl~dl 94 (331)
+|+|+|+ |++|+.+...+.+.+ .++. +..++ .+.... ..| +....+++++
T Consensus 1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea 79 (342)
T TIGR03376 1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA 79 (342)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH
Confidence 4788999 999999999888766 5532 23311 000000 112 3345678887
Q ss_pred hhcCCCCEEEEecChhhHHHHHHHHHHcC--CcEEEEecCCCChh
Q 020101 95 KAETKANASAIYVPPPFAAAAILEAMEAE--LDLVVCITEGIPQH 137 (331)
Q Consensus 95 ~~~~~iDlaii~vp~~~~~~~v~~~~~~G--i~~ivi~t~G~~e~ 137 (331)
.+ +.|++++++|.+...++++++...- -+.+|..+-|+..+
T Consensus 80 l~--~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~ 122 (342)
T TIGR03376 80 AK--GADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVS 122 (342)
T ss_pred Hh--cCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccC
Confidence 76 7899999999999999988876431 23466688899655
No 100
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.87 E-value=0.0073 Score=58.75 Aligned_cols=94 Identities=19% Similarity=0.146 Sum_probs=63.2
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCC------C---ceec-C------cccccCHHHhhhcCCCCEEE
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG------G---TEHL-G------LPVFNTVAEAKAETKANASA 104 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~------g---~~i~-G------~p~y~sl~dl~~~~~iDlai 104 (331)
+..+|+|+|+ |.+|..+...|.+.|...++..||... + +... + +....++++..+ +.|+++
T Consensus 6 ~~mkI~IiGa-Ga~G~alA~~La~~g~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~--~aDlVi 82 (341)
T PRK12439 6 REPKVVVLGG-GSWGTTVASICARRGPTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAAN--CADVVV 82 (341)
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHh--cCCEEE
Confidence 4567999999 999999999888887433334333211 0 0001 1 233456766655 689999
Q ss_pred EecChhhHHHHHHHHHHc-CC-cEEEEecCCCChh
Q 020101 105 IYVPPPFAAAAILEAMEA-EL-DLVVCITEGIPQH 137 (331)
Q Consensus 105 i~vp~~~~~~~v~~~~~~-Gi-~~ivi~t~G~~e~ 137 (331)
+++|+....+++++.... +- ..++.++-|+...
T Consensus 83 lavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~ 117 (341)
T PRK12439 83 MGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQG 117 (341)
T ss_pred EEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCC
Confidence 999999999998888653 22 2466788899653
No 101
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.86 E-value=0.0086 Score=57.98 Aligned_cols=116 Identities=16% Similarity=0.108 Sum_probs=72.7
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCC--eEEEE-eCCCCCCce---ecC--cccccCHHHhhhcCCCCEEEEecChhhHHH
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGT--KMVGG-VTPKKGGTE---HLG--LPVFNTVAEAKAETKANASAIYVPPPFAAA 114 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~--~iv~~-VnP~~~g~~---i~G--~p~y~sl~dl~~~~~iDlaii~vp~~~~~~ 114 (331)
.+|+|+||+|..|+..++.|.+..| ..+.. -.++..|++ ..| +++-.+..+.....++|+++.+.+.+...+
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~~~s~~ 81 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGGSVSKE 81 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCchHHHHH
Confidence 5789999999999999999998543 42322 333333443 111 233333334333347999999999999999
Q ss_pred HHHHHHHcCCcEEEEecCCCChh-H---------HHHHHHHHhccCCcEEEccCCCC
Q 020101 115 AILEAMEAELDLVVCITEGIPQH-D---------MVRVKAALNNQSKTRLVGPNCPG 161 (331)
Q Consensus 115 ~v~~~~~~Gi~~ivi~t~G~~e~-~---------~~~l~~~a~~~~gi~viGPnc~G 161 (331)
...++.++|.-. +=-++-|.-+ | ...|.+. +++|..|.+|||.-
T Consensus 82 ~~p~~~~~G~~V-IdnsSa~Rm~~DVPLVVPeVN~~~l~~~--~~rg~IianpNCst 135 (334)
T COG0136 82 VEPKAAEAGCVV-IDNSSAFRMDPDVPLVVPEVNPEHLIDY--QKRGFIIANPNCST 135 (334)
T ss_pred HHHHHHHcCCEE-EeCCcccccCCCCCEecCCcCHHHHHhh--hhCCCEEECCChHH
Confidence 999999999432 2223333211 1 2335544 33455688999954
No 102
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=96.85 E-value=0.0076 Score=61.31 Aligned_cols=114 Identities=11% Similarity=0.043 Sum_probs=73.4
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce-e-----cC--cccccCHHHhhhc-CCCCEEEEecCh-hhH
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE-H-----LG--LPVFNTVAEAKAE-TKANASAIYVPP-PFA 112 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~-i-----~G--~p~y~sl~dl~~~-~~iDlaii~vp~-~~~ 112 (331)
+|.|||. |+||....++|.+.|+++. ..|.+... ++ . .| +..+.+++|+.+. .++|++++++|+ +.+
T Consensus 3 ~IgvIGL-G~MG~~lA~nL~~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v 80 (470)
T PTZ00142 3 DIGLIGL-AVMGQNLALNIASRGFKIS-VYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAV 80 (470)
T ss_pred EEEEEeE-hHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHH
Confidence 5889999 9999999999999999866 66665421 01 1 14 3357789888753 248988888655 556
Q ss_pred HHHHHHHHHcC-C-cEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCC
Q 020101 113 AAAILEAMEAE-L-DLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG 161 (331)
Q Consensus 113 ~~~v~~~~~~G-i-~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~G 161 (331)
.++++++...- . +.++..+++.. ++..++.+.+ +++|+++++-.-.|
T Consensus 81 ~~vi~~l~~~L~~g~iIID~gn~~~-~dt~~r~~~l-~~~Gi~fldapVSG 129 (470)
T PTZ00142 81 DETIDNLLPLLEKGDIIIDGGNEWY-LNTERRIKRC-EEKGILYLGMGVSG 129 (470)
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCH-HHHHHHHHHH-HHcCCeEEcCCCCC
Confidence 66666655421 1 33344444443 3434444445 57899988755544
No 103
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=96.84 E-value=0.0027 Score=61.70 Aligned_cols=85 Identities=18% Similarity=0.112 Sum_probs=64.5
Q ss_pred EEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCC----------ce------------ecCcccccCHHHhhhcCCCC
Q 020101 45 VICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG----------TE------------HLGLPVFNTVAEAKAETKAN 101 (331)
Q Consensus 45 VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g----------~~------------i~G~p~y~sl~dl~~~~~iD 101 (331)
|+|+|+ |++|+.+++.+.+. +.++++..|+.... +. -.|++++.+++++++ ++|
T Consensus 1 VaInG~-GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~--~vD 77 (333)
T TIGR01546 1 VGVNGY-GTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLE--KVD 77 (333)
T ss_pred CEEECC-cHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhh--cCC
Confidence 478999 99999999987654 68888665543310 00 124556778999986 799
Q ss_pred EEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 020101 102 ASAIYVPPPFAAAAILEAMEAELDLVVCITE 132 (331)
Q Consensus 102 laii~vp~~~~~~~v~~~~~~Gi~~ivi~t~ 132 (331)
+++.++|...+....+...+.|.+.+++-.+
T Consensus 78 iVve~Tp~~~~~~na~~~~~~GakaVl~~~p 108 (333)
T TIGR01546 78 IVVDATPGGIGAKNKPLYEKAGVKAIFQGGE 108 (333)
T ss_pred EEEECCCCCCChhhHHHHHhCCcCEEEECCC
Confidence 9999999999999999999999999665333
No 104
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=96.84 E-value=0.0076 Score=52.89 Aligned_cols=83 Identities=16% Similarity=0.195 Sum_probs=62.0
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC--CCceecCcccccCHHHhhhc-CCCCEEEEecC-hhhHHHHHHHH
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK--GGTEHLGLPVFNTVAEAKAE-TKANASAIYVP-PPFAAAAILEA 119 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~--~g~~i~G~p~y~sl~dl~~~-~~iDlaii~vp-~~~~~~~v~~~ 119 (331)
+++|+|+ |..|+.+++.|++.|+++++.+|.+. .++.+.|+|++.+.+++.+. .+.+.++++++ +....++++.+
T Consensus 1 ~~~I~Ga-g~~g~~~~~~l~~~g~~vvgfid~~~~~~~~~i~g~pvlg~~~~l~~~~~~~~~~iiai~~~~~~~~i~~~l 79 (201)
T TIGR03570 1 KLVIIGA-GGHGRVVADIAEDSGWEIVGFLDDNPALQGTSVDGLPVLGGDEDLLRYPPDEVDLVVAIGDNKLRRRLFEKL 79 (201)
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCCEEEEEEcCCccccCcccCCccEECCHHHHhhhcccccEEEEEcCCHHHHHHHHHHH
Confidence 3678999 99999999999888999998876543 34678999999887776542 23578888884 45556677777
Q ss_pred HHcCCcEE
Q 020101 120 MEAELDLV 127 (331)
Q Consensus 120 ~~~Gi~~i 127 (331)
.+.+++..
T Consensus 80 ~~~g~~~~ 87 (201)
T TIGR03570 80 KAKGYRFA 87 (201)
T ss_pred HhCCCcce
Confidence 77776553
No 105
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=96.82 E-value=0.0065 Score=60.19 Aligned_cols=91 Identities=16% Similarity=0.217 Sum_probs=62.4
Q ss_pred CCCeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCceec-------C--cccccCHHHh-hhcCCCCEEEEecC
Q 020101 40 DKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHL-------G--LPVFNTVAEA-KAETKANASAIYVP 108 (331)
Q Consensus 40 ~k~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~~i~-------G--~p~y~sl~dl-~~~~~iDlaii~vp 108 (331)
++.++|+|+||||..|+.+++.|.++ .+++.........|+.+. + .+.+.+++.. .+ ++|+++.++|
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~--~~DvVf~Alp 113 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFS--DVDAVFCCLP 113 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhc--CCCEEEEcCC
Confidence 45678999999999999999999987 678775554433333321 1 1112222221 12 6999999999
Q ss_pred hhhHHHHHHHHHHcCCcEEEEecCCC
Q 020101 109 PPFAAAAILEAMEAELDLVVCITEGI 134 (331)
Q Consensus 109 ~~~~~~~v~~~~~~Gi~~ivi~t~G~ 134 (331)
.+...+.+..+ +.|.+. |-.++-|
T Consensus 114 ~~~s~~i~~~~-~~g~~V-IDlSs~f 137 (381)
T PLN02968 114 HGTTQEIIKAL-PKDLKI-VDLSADF 137 (381)
T ss_pred HHHHHHHHHHH-hCCCEE-EEcCchh
Confidence 99999999986 778664 5566655
No 106
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=96.80 E-value=0.0073 Score=56.92 Aligned_cols=112 Identities=17% Similarity=0.275 Sum_probs=78.9
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcC----CeEEEEeCCCCCCce----ecCcccccCHHHhhhcCCCCEEEEecChhhHHH
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYG----TKMVGGVTPKKGGTE----HLGLPVFNTVAEAKAETKANASAIYVPPPFAAA 114 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g----~~iv~~VnP~~~g~~----i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~ 114 (331)
.+|.+||+ |+||+.++..+.+.| .+|+ ..||+..... .+|+....+..++.+ +.|++++++.|....+
T Consensus 2 ~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~-v~~~~~e~~~~l~~~~g~~~~~~~~~~~~--~advv~LavKPq~~~~ 77 (266)
T COG0345 2 MKIGFIGA-GNMGEAILSGLLKSGALPPEEII-VTNRSEEKRAALAAEYGVVTTTDNQEAVE--EADVVFLAVKPQDLEE 77 (266)
T ss_pred ceEEEEcc-CHHHHHHHHHHHhcCCCCcceEE-EeCCCHHHHHHHHHHcCCcccCcHHHHHh--hCCEEEEEeChHhHHH
Confidence 46889999 999999999999887 3455 8888863111 345555566667666 6899999999999999
Q ss_pred HHHHHHH-cCCcEEEEecCCCChhHHHHHHHHHhccCC-cEEEccCCCCcc
Q 020101 115 AILEAME-AELDLVVCITEGIPQHDMVRVKAALNNQSK-TRLVGPNCPGVI 163 (331)
Q Consensus 115 ~v~~~~~-~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~g-i~viGPnc~Gi~ 163 (331)
++.++.. ..=+.+|=+..|.+-+..+++. -... +|++ ||..-.+
T Consensus 78 vl~~l~~~~~~~lvISiaAGv~~~~l~~~l----~~~~vvR~M-PNt~a~v 123 (266)
T COG0345 78 VLSKLKPLTKDKLVISIAAGVSIETLERLL----GGLRVVRVM-PNTPALV 123 (266)
T ss_pred HHHHhhcccCCCEEEEEeCCCCHHHHHHHc----CCCceEEeC-CChHHHH
Confidence 9999874 2234556688999877665432 2233 3444 8864433
No 107
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=96.76 E-value=0.0051 Score=55.95 Aligned_cols=90 Identities=19% Similarity=0.146 Sum_probs=60.4
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc-e-------e---cCcc--c-ccCHHHhhhcCCCCEEEEecCh
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-E-------H---LGLP--V-FNTVAEAKAETKANASAIYVPP 109 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~-~-------i---~G~p--~-y~sl~dl~~~~~iDlaii~vp~ 109 (331)
+|.|||++|+||+.+.+.|.+.|++++ .++++...- . . .|+. + ..+..+..+ +.|++++++|+
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~-v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~--~aDvVilavp~ 78 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKII-IGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAK--RADVVILAVPW 78 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEE-EEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHh--cCCEEEEECCH
Confidence 688998559999999999999898865 445443100 0 0 1211 1 124555555 68999999999
Q ss_pred hhHHHHHHHHHHc-CCcEEEEecCCCCh
Q 020101 110 PFAAAAILEAMEA-ELDLVVCITEGIPQ 136 (331)
Q Consensus 110 ~~~~~~v~~~~~~-Gi~~ivi~t~G~~e 136 (331)
....++++++... .-+.++-.+.|++.
T Consensus 79 ~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 79 DHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred HHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 9999998876532 22555656777754
No 108
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.76 E-value=0.0072 Score=59.52 Aligned_cols=113 Identities=12% Similarity=0.066 Sum_probs=71.4
Q ss_pred eEEEEEcCCCCCCcHHHHH-HHHcCCe---EEEEeCCCCCCcee---cC--ccccc--CHHHhhhcCCCCEEEEecChhh
Q 020101 43 TRVICQGITGKNGTFHTEQ-AIEYGTK---MVGGVTPKKGGTEH---LG--LPVFN--TVAEAKAETKANASAIYVPPPF 111 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~-l~~~g~~---iv~~VnP~~~g~~i---~G--~p~y~--sl~dl~~~~~iDlaii~vp~~~ 111 (331)
++|+|+||||-.|+.+++. +.+..+. ++. +.-...|+.. .| ..++. +.+++ . ++|+++.++|.+.
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~-~ss~~sg~~~~~f~g~~~~v~~~~~~~~~-~--~~Divf~a~~~~~ 77 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVF-FSTSQAGGAAPSFGGKEGTLQDAFDIDAL-K--KLDIIITCQGGDY 77 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEE-ecchhhCCcccccCCCcceEEecCChhHh-c--CCCEEEECCCHHH
Confidence 5789999999999999984 4445665 664 4333322322 22 12332 12333 3 6999999999999
Q ss_pred HHHHHHHHHHcCCcEEEE-ecCCCC----------hhHHHHHHHHHhccCCc-EEEccCCCC
Q 020101 112 AAAAILEAMEAELDLVVC-ITEGIP----------QHDMVRVKAALNNQSKT-RLVGPNCPG 161 (331)
Q Consensus 112 ~~~~v~~~~~~Gi~~ivi-~t~G~~----------e~~~~~l~~~a~~~~gi-~viGPnc~G 161 (331)
+.+...++.++|++.+|+ .++-|. |-..+.+.. . .+.|+ .|..|||.-
T Consensus 78 s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~-~-~~~g~~iIanPnC~t 137 (369)
T PRK06598 78 TNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDD-A-LANGVKTFVGGNCTV 137 (369)
T ss_pred HHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHh-h-hhcCCCEEEcCChHH
Confidence 999999999999874333 444332 211233433 1 24665 577999964
No 109
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=96.75 E-value=0.0067 Score=58.50 Aligned_cols=82 Identities=13% Similarity=0.157 Sum_probs=60.6
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcC-CeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHHH
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAM 120 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g-~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~ 120 (331)
.++|+|+||||-.|..+++.|.++. +++++...-.. ... ...++... ++|+++.++|.....+.+.++.
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~--~~~------~~~~~~~~--~~DvvFlalp~~~s~~~~~~~~ 71 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKR--KDA------AARRELLN--AADVAILCLPDDAAREAVALID 71 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCC--Ccc------cCchhhhc--CCCEEEECCCHHHHHHHHHHHH
Confidence 3679999999999999999998874 57774433222 221 22233333 6899999999999999999999
Q ss_pred HcCCcEEEEecCCC
Q 020101 121 EAELDLVVCITEGI 134 (331)
Q Consensus 121 ~~Gi~~ivi~t~G~ 134 (331)
+.|++. |-.+.-|
T Consensus 72 ~~g~~V-IDlSadf 84 (313)
T PRK11863 72 NPATRV-IDASTAH 84 (313)
T ss_pred hCCCEE-EECChhh
Confidence 999874 6567655
No 110
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=96.73 E-value=0.0058 Score=57.64 Aligned_cols=91 Identities=12% Similarity=0.102 Sum_probs=59.4
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce--ecC-cccccCHHHhhhcCCCCEEEEecChhhHHHHHHHH
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLG-LPVFNTVAEAKAETKANASAIYVPPPFAAAAILEA 119 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~--i~G-~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~ 119 (331)
+|+|||. |.||..+...|.+.|++++ .+|++... +. -.| +....+..+... +.|++++++|++...+++++.
T Consensus 2 ~I~IIG~-G~mG~sla~~L~~~g~~V~-~~d~~~~~~~~a~~~g~~~~~~~~~~~~~--~aDlVilavp~~~~~~~~~~l 77 (279)
T PRK07417 2 KIGIVGL-GLIGGSLGLDLRSLGHTVY-GVSRRESTCERAIERGLVDEASTDLSLLK--DCDLVILALPIGLLLPPSEQL 77 (279)
T ss_pred eEEEEee-cHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHCCCcccccCCHhHhc--CCCEEEEcCCHHHHHHHHHHH
Confidence 5889998 9999999999999898866 77765410 01 122 222322223344 689999999999999998887
Q ss_pred HHc-CCcEEEEecCCCChhH
Q 020101 120 MEA-ELDLVVCITEGIPQHD 138 (331)
Q Consensus 120 ~~~-Gi~~ivi~t~G~~e~~ 138 (331)
... .-+.+|.-+.+...+.
T Consensus 78 ~~~l~~~~ii~d~~Svk~~~ 97 (279)
T PRK07417 78 IPALPPEAIVTDVGSVKAPI 97 (279)
T ss_pred HHhCCCCcEEEeCcchHHHH
Confidence 764 3334443333444333
No 111
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.73 E-value=0.0061 Score=59.55 Aligned_cols=89 Identities=11% Similarity=0.024 Sum_probs=62.9
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEE-eCCCCCCceec---Cccc------------c--cCHHHhhhcCCCCE
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGG-VTPKKGGTEHL---GLPV------------F--NTVAEAKAETKANA 102 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~-VnP~~~g~~i~---G~p~------------y--~sl~dl~~~~~iDl 102 (331)
.++|+|+|+||.+|+.+++.|.++ .+++++. .++...|+.+. +... + .+.+++ . ++|+
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~--~~Dv 79 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAV-D--DVDI 79 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHh-c--CCCE
Confidence 478999999999999999998876 4577755 45544443322 1111 1 123333 2 6899
Q ss_pred EEEecChhhHHHHHHHHHHcCCcEEEEecCCC
Q 020101 103 SAIYVPPPFAAAAILEAMEAELDLVVCITEGI 134 (331)
Q Consensus 103 aii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~ 134 (331)
++.++|.....+.++++.++|++. |..+.-|
T Consensus 80 Vf~a~p~~~s~~~~~~~~~~G~~v-IDls~~f 110 (349)
T PRK08664 80 VFSALPSDVAGEVEEEFAKAGKPV-FSNASAH 110 (349)
T ss_pred EEEeCChhHHHHHHHHHHHCCCEE-EECCchh
Confidence 999999999999999999999986 4456544
No 112
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.73 E-value=0.0097 Score=57.20 Aligned_cols=90 Identities=12% Similarity=0.102 Sum_probs=62.8
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCC----------Cce-ec------CcccccCHHHhhhcCCCCEEEEe
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG----------GTE-HL------GLPVFNTVAEAKAETKANASAIY 106 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~----------g~~-i~------G~p~y~sl~dl~~~~~iDlaii~ 106 (331)
+|+|+|+ |.+|..+...|.+.|.++. .++++.. +.. .. +++.+.++++...+ +.|+++++
T Consensus 2 kI~IiGa-Ga~G~ala~~L~~~g~~V~-l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~Dliiia 78 (326)
T PRK14620 2 KISILGA-GSFGTAIAIALSSKKISVN-LWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSD-NATCIILA 78 (326)
T ss_pred EEEEECc-CHHHHHHHHHHHHCCCeEE-EEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhC-CCCEEEEE
Confidence 5889999 9999999999998888765 5554320 001 11 23344566665421 68999999
Q ss_pred cChhhHHHHHHHHHH-c-C-CcEEEEecCCCCh
Q 020101 107 VPPPFAAAAILEAME-A-E-LDLVVCITEGIPQ 136 (331)
Q Consensus 107 vp~~~~~~~v~~~~~-~-G-i~~ivi~t~G~~e 136 (331)
+|+....++++++.. . + -..+++++.|+..
T Consensus 79 vks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~ 111 (326)
T PRK14620 79 VPTQQLRTICQQLQDCHLKKNTPILICSKGIEK 111 (326)
T ss_pred eCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence 999999999998875 3 2 2346778889855
No 113
>PRK08818 prephenate dehydrogenase; Provisional
Probab=96.71 E-value=0.016 Score=57.16 Aligned_cols=70 Identities=19% Similarity=0.119 Sum_probs=56.3
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHHH
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAM 120 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~ 120 (331)
+.+|.|||.+|.||....+.|++. +++++ ++|+.. + ...++++... +.|++++|+|.+...+++++..
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~-g~D~~d---~-----~~~~~~~~v~--~aDlVilavPv~~~~~~l~~l~ 72 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVI-GHDPAD---P-----GSLDPATLLQ--RADVLIFSAPIRHTAALIEEYV 72 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEE-EEcCCc---c-----ccCCHHHHhc--CCCEEEEeCCHHHHHHHHHHHh
Confidence 457899999999999999999874 78876 788753 1 1234566665 7999999999999999999988
Q ss_pred Hc
Q 020101 121 EA 122 (331)
Q Consensus 121 ~~ 122 (331)
..
T Consensus 73 ~~ 74 (370)
T PRK08818 73 AL 74 (370)
T ss_pred hh
Confidence 74
No 114
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=96.71 E-value=0.0036 Score=56.78 Aligned_cols=84 Identities=19% Similarity=0.202 Sum_probs=60.3
Q ss_pred EEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce-----ecCccc----ccC---HHHhhhcCCCCEEEEecC----
Q 020101 45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-----HLGLPV----FNT---VAEAKAETKANASAIYVP---- 108 (331)
Q Consensus 45 VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~-----i~G~p~----y~s---l~dl~~~~~iDlaii~vp---- 108 (331)
|+|+|++|+.|+.+++.|.+.++++.+.+.+... +. -.|..+ |.+ |.+... ++|.++++++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~-~~~~~l~~~g~~vv~~d~~~~~~l~~al~--g~d~v~~~~~~~~~ 77 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSS-DRAQQLQALGAEVVEADYDDPESLVAALK--GVDAVFSVTPPSHP 77 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHH-HHHHHHHHTTTEEEES-TT-HHHHHHHHT--TCSEEEEESSCSCC
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccch-hhhhhhhcccceEeecccCCHHHHHHHHc--CCceEEeecCcchh
Confidence 5789999999999999999989998877775420 11 123321 333 444444 8999999999
Q ss_pred --hhhHHHHHHHHHHcCCcEEEEecC
Q 020101 109 --PPFAAAAILEAMEAELDLVVCITE 132 (331)
Q Consensus 109 --~~~~~~~v~~~~~~Gi~~ivi~t~ 132 (331)
.+....+++.|.+.||+.++ +++
T Consensus 78 ~~~~~~~~li~Aa~~agVk~~v-~ss 102 (233)
T PF05368_consen 78 SELEQQKNLIDAAKAAGVKHFV-PSS 102 (233)
T ss_dssp CHHHHHHHHHHHHHHHT-SEEE-ESE
T ss_pred hhhhhhhhHHHhhhccccceEE-EEE
Confidence 45678899999999999976 443
No 115
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=96.71 E-value=0.017 Score=56.40 Aligned_cols=92 Identities=10% Similarity=0.051 Sum_probs=63.1
Q ss_pred CCCeEEEEEcCCCCCCcHHHHHHHHcCC---eEEEEeCCCCCCcee--cCc-ccccCHH-HhhhcCCCCEEEEecChhhH
Q 020101 40 DKNTRVICQGITGKNGTFHTEQAIEYGT---KMVGGVTPKKGGTEH--LGL-PVFNTVA-EAKAETKANASAIYVPPPFA 112 (331)
Q Consensus 40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~---~iv~~VnP~~~g~~i--~G~-p~y~sl~-dl~~~~~iDlaii~vp~~~~ 112 (331)
.+..+|+|+||||..|+.+++.|.+.++ ++......+..|+.+ .|. ..+..++ +... ++|+++.++|....
T Consensus 5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~--~~D~vf~a~p~~~s 82 (344)
T PLN02383 5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFD--GVDIALFSAGGSIS 82 (344)
T ss_pred CCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHc--CCCEEEECCCcHHH
Confidence 4567899999999999999999988544 454343443334432 221 1222222 2223 69999999999999
Q ss_pred HHHHHHHHHcCCcEEEEecCCC
Q 020101 113 AAAILEAMEAELDLVVCITEGI 134 (331)
Q Consensus 113 ~~~v~~~~~~Gi~~ivi~t~G~ 134 (331)
.+.+.++.+.|++. |-.++-|
T Consensus 83 ~~~~~~~~~~g~~V-IDlS~~f 103 (344)
T PLN02383 83 KKFGPIAVDKGAVV-VDNSSAF 103 (344)
T ss_pred HHHHHHHHhCCCEE-EECCchh
Confidence 99999999999874 5566544
No 116
>PRK06444 prephenate dehydrogenase; Provisional
Probab=96.67 E-value=0.0042 Score=56.05 Aligned_cols=51 Identities=22% Similarity=0.119 Sum_probs=44.6
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHHH
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAM 120 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~ 120 (331)
+|+|||++|+||+...+.+.+.|+.+. + . +.|++++++|.....+++++..
T Consensus 2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~-----------------------~-~--~~DlVilavPv~~~~~~i~~~~ 52 (197)
T PRK06444 2 MEIIIGKNGRLGRVLCSILDDNGLGVY-----------------------I-K--KADHAFLSVPIDAALNYIESYD 52 (197)
T ss_pred EEEEEecCCcHHHHHHHHHHhCCCEEE-----------------------E-C--CCCEEEEeCCHHHHHHHHHHhC
Confidence 688999999999999999999998754 1 2 6899999999999999998864
No 117
>PRK06545 prephenate dehydrogenase; Validated
Probab=96.67 E-value=0.011 Score=57.79 Aligned_cols=107 Identities=21% Similarity=0.253 Sum_probs=68.7
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeE-EEEeCCCCCCce---ecCccc----ccCHHHhhhcCCCCEEEEecChhhHHHH
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKM-VGGVTPKKGGTE---HLGLPV----FNTVAEAKAETKANASAIYVPPPFAAAA 115 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~i-v~~VnP~~~g~~---i~G~p~----y~sl~dl~~~~~iDlaii~vp~~~~~~~ 115 (331)
+|.|||. |.||..+.+.+.+.|+++ ++..||+. .. -.+..+ ..+++++.. +.|++++++|++...++
T Consensus 2 ~I~iIG~-GliG~siA~~L~~~G~~v~i~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~--~aDlVilavP~~~~~~v 76 (359)
T PRK06545 2 TVLIVGL-GLIGGSLALAIKAAGPDVFIIGYDPSA--AQLARALGFGVIDELAADLQRAAA--EADLIVLAVPVDATAAL 76 (359)
T ss_pred eEEEEEe-CHHHHHHHHHHHhcCCCeEEEEeCCCH--HHHHHHhcCCCCcccccCHHHHhc--CCCEEEEeCCHHHHHHH
Confidence 4788999 999999999999988763 33566654 21 112222 245666665 79999999999999999
Q ss_pred HHHHHHc--CCcEEEEecCCCChhHHHHHHHHHhccCCcEEEcc
Q 020101 116 ILEAMEA--ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGP 157 (331)
Q Consensus 116 v~~~~~~--Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGP 157 (331)
+++.... .-..++.-..+...+..+++.+. ...+.+++|-
T Consensus 77 l~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~--~~~~~~~ig~ 118 (359)
T PRK06545 77 LAELADLELKPGVIVTDVGSVKGAILAEAEAL--LGDLIRFVGG 118 (359)
T ss_pred HHHHhhcCCCCCcEEEeCccccHHHHHHHHHh--cCCCCeEEee
Confidence 9888752 33343433345544444444332 1345677763
No 118
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.66 E-value=0.0026 Score=62.51 Aligned_cols=104 Identities=14% Similarity=0.219 Sum_probs=64.8
Q ss_pred EEEEcCCCCCCcHHHHHHHHcC-C-eEE-EEeCCCCC--------Ccee----cCcccccCHHHhhhcCCCCEEEEecCh
Q 020101 45 VICQGITGKNGTFHTEQAIEYG-T-KMV-GGVTPKKG--------GTEH----LGLPVFNTVAEAKAETKANASAIYVPP 109 (331)
Q Consensus 45 VaIvGasgk~G~~~~~~l~~~g-~-~iv-~~VnP~~~--------g~~i----~G~p~y~sl~dl~~~~~iDlaii~vp~ 109 (331)
|+|+|+ |.+|+.+++.|.+.+ + +++ +.-|+... +..+ ..+.-..+++++.. +.|++|.++|+
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~--~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLR--GCDVVINCAGP 77 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHT--TSSEEEE-SSG
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHh--cCCEEEECCcc
Confidence 578999 999999999998864 5 543 33333320 0001 11111224666666 68999999999
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEE
Q 020101 110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155 (331)
Q Consensus 110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~vi 155 (331)
.....+++.|++.|++. +- +.+-.+...++.+.+ +++|+.++
T Consensus 78 ~~~~~v~~~~i~~g~~y-vD--~~~~~~~~~~l~~~a-~~~g~~~l 119 (386)
T PF03435_consen 78 FFGEPVARACIEAGVHY-VD--TSYVTEEMLALDEEA-KEAGVTAL 119 (386)
T ss_dssp GGHHHHHHHHHHHT-EE-EE--SS-HHHHHHHCHHHH-HHTTSEEE
T ss_pred chhHHHHHHHHHhCCCe-ec--cchhHHHHHHHHHHH-HhhCCEEE
Confidence 99999999999999997 43 443234445555666 67777755
No 119
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=96.65 E-value=0.0083 Score=51.70 Aligned_cols=86 Identities=14% Similarity=0.069 Sum_probs=55.0
Q ss_pred eEEEEEcCCCCCCcHHHHHHHH-cCCeEEEEeCCCCCC--------ceecCc-------------------ccc--cCHH
Q 020101 43 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGG--------TEHLGL-------------------PVF--NTVA 92 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~-~g~~iv~~VnP~~~g--------~~i~G~-------------------p~y--~sl~ 92 (331)
++|+|+|+ |+||+.+++.+.+ .++++++..++.... +...|. +++ .+.+
T Consensus 1 ikv~I~G~-GriGr~v~~~~~~~~~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~i~~~~~~~p~ 79 (149)
T smart00846 1 IKVGINGF-GRIGRLVLRALLERPDIEVVAINDLTDPETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERDPA 79 (149)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCEEEEeecCCCHHHHHHHhcccCCCCCCCCcEEEeCCEEEECCEEEEEEecCChH
Confidence 47899999 9999999998775 478888776652100 111221 111 2344
Q ss_pred Hhh-hcCCCCEEEEecChhhHHHHHHHHHHcCCcEEEE
Q 020101 93 EAK-AETKANASAIYVPPPFAAAAILEAMEAELDLVVC 129 (331)
Q Consensus 93 dl~-~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi 129 (331)
+++ .+.++|+++.+|..-...+.++.-++.|+|.+++
T Consensus 80 ~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkVii 117 (149)
T smart00846 80 NLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVII 117 (149)
T ss_pred HCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEe
Confidence 443 2246788888876656666666777788888665
No 120
>PRK06436 glycerate dehydrogenase; Provisional
Probab=96.65 E-value=0.018 Score=55.28 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=50.9
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCc-ccccCHHHhhhcCCCCEEEEecChhh
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGL-PVFNTVAEAKAETKANASAIYVPPPF 111 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~-p~y~sl~dl~~~~~iDlaii~vp~~~ 111 (331)
...+|.|+|. |++|+.+.+.+..+|++++ .+||.. .. .|. ..|.+++++.. +.|++++++|...
T Consensus 121 ~gktvgIiG~-G~IG~~vA~~l~afG~~V~-~~~r~~--~~-~~~~~~~~~l~ell~--~aDiv~~~lp~t~ 185 (303)
T PRK06436 121 YNKSLGILGY-GGIGRRVALLAKAFGMNIY-AYTRSY--VN-DGISSIYMEPEDIMK--KSDFVLISLPLTD 185 (303)
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHCCCEEE-EECCCC--cc-cCcccccCCHHHHHh--hCCEEEECCCCCc
Confidence 4566889999 9999999999888999987 788764 22 233 34789999987 7899999999643
No 121
>PRK08507 prephenate dehydrogenase; Validated
Probab=96.64 E-value=0.0094 Score=56.01 Aligned_cols=89 Identities=18% Similarity=0.184 Sum_probs=60.4
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCCCCCCc---eecCcc-cccCHHHhhhcCCCCEEEEecChhhHHHHHH
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKGGT---EHLGLP-VFNTVAEAKAETKANASAIYVPPPFAAAAIL 117 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP~~~g~---~i~G~p-~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~ 117 (331)
+|+|||. |+||..+.+.|.+.|+ +++ ++|++.... ...|.. .+.+.+++. +.|++|+++|++...++++
T Consensus 2 ~I~iIG~-G~mG~sla~~l~~~g~~~~v~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~---~aD~Vilavp~~~~~~~~~ 76 (275)
T PRK08507 2 KIGIIGL-GLMGGSLGLALKEKGLISKVY-GYDHNELHLKKALELGLVDEIVSFEELK---KCDVIFLAIPVDAIIEILP 76 (275)
T ss_pred EEEEEcc-CHHHHHHHHHHHhcCCCCEEE-EEcCCHHHHHHHHHCCCCcccCCHHHHh---cCCEEEEeCcHHHHHHHHH
Confidence 5889998 9999999999998886 444 677754110 123432 344677754 4899999999999999998
Q ss_pred HHHHcCCcEEEEecCCCChhH
Q 020101 118 EAMEAELDLVVCITEGIPQHD 138 (331)
Q Consensus 118 ~~~~~Gi~~ivi~t~G~~e~~ 138 (331)
+.....-..+| +..|.....
T Consensus 77 ~l~~l~~~~iv-~d~gs~k~~ 96 (275)
T PRK08507 77 KLLDIKENTTI-IDLGSTKAK 96 (275)
T ss_pred HHhccCCCCEE-EECccchHH
Confidence 87652223333 455554433
No 122
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=96.63 E-value=0.0041 Score=59.02 Aligned_cols=94 Identities=14% Similarity=0.103 Sum_probs=60.4
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce--------------------------ecC-cccccCHHHh
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--------------------------HLG-LPVFNTVAEA 94 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~--------------------------i~G-~p~y~sl~dl 94 (331)
..+|+|||+ |.||..++..+...|++++ .+|++...-+ ..+ +.+..+.++
T Consensus 4 ~~~V~vIG~-G~mG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~- 80 (295)
T PLN02545 4 IKKVGVVGA-GQMGSGIAQLAAAAGMDVW-LLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEE- 80 (295)
T ss_pred cCEEEEECC-CHHHHHHHHHHHhcCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHH-
Confidence 456899999 9999999999999999876 7776541100 001 122234544
Q ss_pred hhcCCCCEEEEecC--hhhHHHHHHHHHHc-CCcEEEE-ecCCCChhHHH
Q 020101 95 KAETKANASAIYVP--PPFAAAAILEAMEA-ELDLVVC-ITEGIPQHDMV 140 (331)
Q Consensus 95 ~~~~~iDlaii~vp--~~~~~~~v~~~~~~-Gi~~ivi-~t~G~~e~~~~ 140 (331)
.+ +.|+++.++| ++.-..++.++.+. .-+.+++ -+++++.++..
T Consensus 81 ~~--~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~ 128 (295)
T PLN02545 81 LR--DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLA 128 (295)
T ss_pred hC--CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHH
Confidence 34 6899999999 66666666665543 2233443 46677655543
No 123
>PRK06392 homoserine dehydrogenase; Provisional
Probab=96.61 E-value=0.0097 Score=57.75 Aligned_cols=109 Identities=15% Similarity=0.138 Sum_probs=68.6
Q ss_pred eEEEEEcCCCCCCcHHHHHHHH--------cCCeEEEEeCCCCC-----Ccee---------cCcccc--c--CHHHhhh
Q 020101 43 TRVICQGITGKNGTFHTEQAIE--------YGTKMVGGVTPKKG-----GTEH---------LGLPVF--N--TVAEAKA 96 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~--------~g~~iv~~VnP~~~-----g~~i---------~G~p~y--~--sl~dl~~ 96 (331)
++|+|+|+ |+.|+.+++.+.+ .++++++..|.+.. |-.+ ..+..| + +++++.+
T Consensus 1 mrVaIiGf-G~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~ 79 (326)
T PRK06392 1 IRISIIGL-GNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFE 79 (326)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhc
Confidence 37899999 9999999988766 24677765443320 0000 011122 2 5677654
Q ss_pred cCCCCEEEEecChh----hHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEE
Q 020101 97 ETKANASAIYVPPP----FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155 (331)
Q Consensus 97 ~~~iDlaii~vp~~----~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~vi 155 (331)
.++|++|.++|.. .....+++++++|++.+. .+-|.--....+|.+.| +++|.++.
T Consensus 80 -~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVT-aNKgalA~~~~eL~~lA-~~~g~~~~ 139 (326)
T PRK06392 80 -IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVT-ANKSGLANHWHDIMDSA-SKNRRIIR 139 (326)
T ss_pred -CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEc-CCHHHHHhhHHHHHHHH-HHcCCeEE
Confidence 3799999999742 256778999999999732 22121113345677777 77876655
No 124
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.60 E-value=0.0081 Score=58.34 Aligned_cols=89 Identities=15% Similarity=0.042 Sum_probs=61.4
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCC---eEEEEeCCCCCCcee--cCcc-cccCHHHh-hhcCCCCEEEEecChhhHHHH
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGT---KMVGGVTPKKGGTEH--LGLP-VFNTVAEA-KAETKANASAIYVPPPFAAAA 115 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~---~iv~~VnP~~~g~~i--~G~p-~y~sl~dl-~~~~~iDlaii~vp~~~~~~~ 115 (331)
++|+|+||||..|+.+++.|.+.++ ++.+....+..|+.+ .|.. .+.++++. .. ++|+++.++|.....+.
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~--~vDvVf~A~g~g~s~~~ 79 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFS--GVDIALFSAGGSVSKKY 79 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHc--CCCEEEECCChHHHHHH
Confidence 5799999999999999999998543 566555554444443 2211 22222221 13 79999999999999999
Q ss_pred HHHHHHcCCcEEEEecCCC
Q 020101 116 ILEAMEAELDLVVCITEGI 134 (331)
Q Consensus 116 v~~~~~~Gi~~ivi~t~G~ 134 (331)
+..+.++|++ +|-.++.|
T Consensus 80 ~~~~~~~G~~-VIDlS~~~ 97 (334)
T PRK14874 80 APKAAAAGAV-VIDNSSAF 97 (334)
T ss_pred HHHHHhCCCE-EEECCchh
Confidence 9999999983 34345544
No 125
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.59 E-value=0.015 Score=62.20 Aligned_cols=110 Identities=19% Similarity=0.178 Sum_probs=71.3
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCCCCCCce---ecCcc--cccCHHHhhhcCCCCEEEEecChhhHH
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKGGTE---HLGLP--VFNTVAEAKAETKANASAIYVPPPFAA 113 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP~~~g~~---i~G~p--~y~sl~dl~~~~~iDlaii~vp~~~~~ 113 (331)
+..+|+|||+ |+||..+.+.+.+.|+ +++ .+|++....+ ..|.. ...++++..+ +.|++++++|++...
T Consensus 2 ~~~~I~IIG~-G~mG~ala~~l~~~G~~~~V~-~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~--~aDvVilavp~~~~~ 77 (735)
T PRK14806 2 LFGRVVVIGL-GLIGGSFAKALRERGLAREVV-AVDRRAKSLELAVSLGVIDRGEEDLAEAVS--GADVIVLAVPVLAME 77 (735)
T ss_pred CCcEEEEEee-CHHHHHHHHHHHhcCCCCEEE-EEECChhHHHHHHHCCCCCcccCCHHHHhc--CCCEEEECCCHHHHH
Confidence 3456889998 9999999999998884 554 6777652111 13432 3345666666 789999999999999
Q ss_pred HHHHHHHHc-CCcEEEEecCCCChhHHHHHHHHHhccCCcEEE
Q 020101 114 AAILEAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155 (331)
Q Consensus 114 ~~v~~~~~~-Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~vi 155 (331)
++++++... .-+.+++-..+....-.+++.+.. ....+|++
T Consensus 78 ~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~-~~~~~r~~ 119 (735)
T PRK14806 78 KVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVF-GELPAGFV 119 (735)
T ss_pred HHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhc-cccCCeEE
Confidence 988887653 223344444555544444454443 23356766
No 126
>PRK08605 D-lactate dehydrogenase; Validated
Probab=96.56 E-value=0.011 Score=57.46 Aligned_cols=105 Identities=18% Similarity=0.205 Sum_probs=65.8
Q ss_pred CCeEEEEEcCCCCCCcHHHHHH-HHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHH--H
Q 020101 41 KNTRVICQGITGKNGTFHTEQA-IEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI--L 117 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l-~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v--~ 117 (331)
+..+|.|||+ |++|+.+.+.+ ..+|.+++ ..||........++....+++++.. +.|++++++|.......+ +
T Consensus 145 ~g~~VgIIG~-G~IG~~vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~l~ell~--~aDvIvl~lP~t~~t~~li~~ 220 (332)
T PRK08605 145 KDLKVAVIGT-GRIGLAVAKIFAKGYGSDVV-AYDPFPNAKAATYVDYKDTIEEAVE--GADIVTLHMPATKYNHYLFNA 220 (332)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCEEE-EECCCccHhHHhhccccCCHHHHHH--hCCEEEEeCCCCcchhhhcCH
Confidence 3457899999 99999999998 55688877 7787652111123344458999887 789999999976544443 1
Q ss_pred H---HHHcCCcEEEEecCCCChhHHHHHHHHHhccCCc
Q 020101 118 E---AMEAELDLVVCITEGIPQHDMVRVKAALNNQSKT 152 (331)
Q Consensus 118 ~---~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi 152 (331)
+ ..+.|. .+|+.+.|... +..+|.+.. ++..+
T Consensus 221 ~~l~~mk~ga-ilIN~sRG~~v-d~~aL~~aL-~~g~i 255 (332)
T PRK08605 221 DLFKHFKKGA-VFVNCARGSLV-DTKALLDAL-DNGLI 255 (332)
T ss_pred HHHhcCCCCc-EEEECCCCccc-CHHHHHHHH-HhCCe
Confidence 1 223332 44556666533 334455544 44444
No 127
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.55 E-value=0.0081 Score=57.21 Aligned_cols=116 Identities=16% Similarity=0.318 Sum_probs=69.6
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc-e--ecCccc--ccCHHHhhhcCCCCEEEEecChhhHHHH
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-E--HLGLPV--FNTVAEAKAETKANASAIYVPPPFAAAA 115 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~-~--i~G~p~--y~sl~dl~~~~~iDlaii~vp~~~~~~~ 115 (331)
+..+|+|+|+ |++|+.+++.+...|.+++ .+|++.... . ..|... +.++++... +.|+++.++|.......
T Consensus 150 ~gk~v~IiG~-G~iG~avA~~L~~~G~~V~-v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~--~aDiVint~P~~ii~~~ 225 (287)
T TIGR02853 150 HGSNVMVLGF-GRTGMTIARTFSALGARVF-VGARSSADLARITEMGLIPFPLNKLEEKVA--EIDIVINTIPALVLTAD 225 (287)
T ss_pred CCCEEEEEcC-hHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHCCCeeecHHHHHHHhc--cCCEEEECCChHHhCHH
Confidence 3467899999 9999999999999999866 777654100 0 123332 234566655 78999999987643322
Q ss_pred HHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcE-EEccCCCCcccCC
Q 020101 116 ILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPNCPGVIKPG 166 (331)
Q Consensus 116 v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~-viGPnc~Gi~~p~ 166 (331)
..+..+.+ ..++.+++.-...+. +.+ ++.|++ +.-|+-.|.+.|.
T Consensus 226 ~l~~~k~~-aliIDlas~Pg~tdf----~~A-k~~G~~a~~~~glPg~~ap~ 271 (287)
T TIGR02853 226 VLSKLPKH-AVIIDLASKPGGTDF----EYA-KKRGIKALLAPGLPGIVAPK 271 (287)
T ss_pred HHhcCCCC-eEEEEeCcCCCCCCH----HHH-HHCCCEEEEeCCCCcccCch
Confidence 22222222 223334432222233 334 788887 4467777777664
No 128
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=96.53 E-value=0.0096 Score=58.01 Aligned_cols=93 Identities=18% Similarity=0.104 Sum_probs=65.9
Q ss_pred CCCeEEEEEcCCCCCCcHHHHHHHH--c-CCeEEEEeCCCCCCceec--C--cccccCHHHhhhcCCCCEEEEecChhhH
Q 020101 40 DKNTRVICQGITGKNGTFHTEQAIE--Y-GTKMVGGVTPKKGGTEHL--G--LPVFNTVAEAKAETKANASAIYVPPPFA 112 (331)
Q Consensus 40 ~k~~~VaIvGasgk~G~~~~~~l~~--~-g~~iv~~VnP~~~g~~i~--G--~p~y~sl~dl~~~~~iDlaii~vp~~~~ 112 (331)
.+.++|+|+||||-.|+.+++.|.+ + .+++...-..+..|+.+. | +++. ++++..- .++|+++.++|...+
T Consensus 2 ~~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~-~~~Dvvf~a~p~~~s 79 (336)
T PRK08040 2 SEGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ-DAAEFDW-SQAQLAFFVAGREAS 79 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE-eCchhhc-cCCCEEEECCCHHHH
Confidence 4568899999999999999999998 4 346664444444454431 2 2222 4444320 268999999999999
Q ss_pred HHHHHHHHHcCCcEEEEecCCCC
Q 020101 113 AAAILEAMEAELDLVVCITEGIP 135 (331)
Q Consensus 113 ~~~v~~~~~~Gi~~ivi~t~G~~ 135 (331)
.+.+.++.++|++. |-.++-|.
T Consensus 80 ~~~~~~~~~~g~~V-IDlS~~fR 101 (336)
T PRK08040 80 AAYAEEATNAGCLV-IDSSGLFA 101 (336)
T ss_pred HHHHHHHHHCCCEE-EECChHhc
Confidence 99999999999874 65675553
No 129
>PLN02858 fructose-bisphosphate aldolase
Probab=96.52 E-value=0.013 Score=66.86 Aligned_cols=114 Identities=18% Similarity=0.211 Sum_probs=74.9
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce--ecCcccccCHHHhhhcCCCCEEEEecC-hhhHHHHHH-
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVP-PPFAAAAIL- 117 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~--i~G~p~y~sl~dl~~~~~iDlaii~vp-~~~~~~~v~- 117 (331)
.+|.+||. |+||..+.++|.+.|++++ +.|+.... +. -.|.....+.+++.+ +.|++++++| ++.+.+++.
T Consensus 325 ~~IGfIGl-G~MG~~mA~~L~~~G~~V~-v~dr~~~~~~~l~~~Ga~~~~s~~e~~~--~aDvVi~~V~~~~~v~~Vl~g 400 (1378)
T PLN02858 325 KRIGFIGL-GAMGFGMASHLLKSNFSVC-GYDVYKPTLVRFENAGGLAGNSPAEVAK--DVDVLVIMVANEVQAENVLFG 400 (1378)
T ss_pred CeEEEECc-hHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHcCCeecCCHHHHHh--cCCEEEEecCChHHHHHHHhc
Confidence 67899999 9999999999999999876 66765410 11 135556778888887 7999999999 555566652
Q ss_pred --HHHHc-CCcEEEEecCCCChhHHHHHHHHHhcc--CCcEEE-ccCCCC
Q 020101 118 --EAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQ--SKTRLV-GPNCPG 161 (331)
Q Consensus 118 --~~~~~-Gi~~ivi~t~G~~e~~~~~l~~~a~~~--~gi~vi-GPnc~G 161 (331)
.++.. ....+|+-.+-.+.+..+++.+.+ ++ +|++++ .|=+-|
T Consensus 401 ~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l-~~~g~g~~~lDAPVsGg 449 (1378)
T PLN02858 401 DLGAVSALPAGASIVLSSTVSPGFVIQLERRL-ENEGRDIKLVDAPVSGG 449 (1378)
T ss_pred hhhHHhcCCCCCEEEECCCCCHHHHHHHHHHH-HhhCCCcEEEEccCCCC
Confidence 23332 122344434444455666676665 45 777755 554433
No 130
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=96.48 E-value=0.013 Score=58.00 Aligned_cols=63 Identities=16% Similarity=0.149 Sum_probs=50.6
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecCh
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP 109 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~ 109 (331)
+..+|.|||. |++|+.+.+.+..+|++++ ..||.. ....+..-|.+++++.+ +.|++++.+|-
T Consensus 115 ~gktvGIIG~-G~IG~~va~~l~a~G~~V~-~~Dp~~--~~~~~~~~~~~l~ell~--~aDiV~lh~Pl 177 (381)
T PRK00257 115 AERTYGVVGA-GHVGGRLVRVLRGLGWKVL-VCDPPR--QEAEGDGDFVSLERILE--ECDVISLHTPL 177 (381)
T ss_pred CcCEEEEECC-CHHHHHHHHHHHHCCCEEE-EECCcc--cccccCccccCHHHHHh--hCCEEEEeCcC
Confidence 4566899999 9999999999999999987 778854 22223334678999987 79999999995
No 131
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=96.47 E-value=0.0045 Score=62.27 Aligned_cols=116 Identities=16% Similarity=0.259 Sum_probs=76.5
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCC-----CCCce---ecCcccccCHHHhhhcCCCCEEEEecChhhH
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK-----KGGTE---HLGLPVFNTVAEAKAETKANASAIYVPPPFA 112 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~-----~~g~~---i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~ 112 (331)
+..+|+|||. |..|+....+|+..|.+++.++-+. ..+.+ -.|+++ .+++|+.. ..|++++.+|....
T Consensus 35 kgKtIaIIGy-GSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~--~ADvVviLlPDt~q 110 (487)
T PRK05225 35 KGKKIVIVGC-GAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIP--QADLVINLTPDKQH 110 (487)
T ss_pred CCCEEEEEcc-CHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHH--hCCEEEEcCChHHH
Confidence 3466888999 9999999999999999877555443 21111 257765 56888876 78999999999864
Q ss_pred HHHHHHHHH--cCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCccc
Q 020101 113 AAAILEAME--AELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIK 164 (331)
Q Consensus 113 ~~~v~~~~~--~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~ 164 (331)
..+- +-+. ..-...+.|+.||.-.... + . ..+.-.+-++.|-|+|-..
T Consensus 111 ~~v~-~~i~p~LK~Ga~L~fsHGFni~~~~-i-~-~~~dvdVimvAPKgpG~~v 160 (487)
T PRK05225 111 SDVV-RAVQPLMKQGAALGYSHGFNIVEVG-E-Q-IRKDITVVMVAPKCPGTEV 160 (487)
T ss_pred HHHH-HHHHhhCCCCCEEEecCCceeeeCc-e-e-CCCCCcEEEECCCCCCchH
Confidence 4433 3333 3345667799999743211 0 1 1134456688899888443
No 132
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.44 E-value=0.015 Score=57.91 Aligned_cols=95 Identities=19% Similarity=0.281 Sum_probs=60.5
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce-e--------------------cC-cccccCHHHhhhcCCC
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE-H--------------------LG-LPVFNTVAEAKAETKA 100 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~-i--------------------~G-~p~y~sl~dl~~~~~i 100 (331)
+|+|||. |.+|......|.+.|++++ ++|++... +. . .| +....+++++.+ +.
T Consensus 2 kI~vIGl-G~~G~~lA~~La~~G~~V~-~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~--~a 77 (411)
T TIGR03026 2 KIAVIGL-GYVGLPLAALLADLGHEVT-GVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIR--DA 77 (411)
T ss_pred EEEEECC-CchhHHHHHHHHhcCCeEE-EEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHh--hC
Confidence 6889999 9999999999999999876 55654310 00 0 13 344456777665 68
Q ss_pred CEEEEecChhh----------HHHHHHHHHHc-CCcEEEEecCCCChhHHHHH
Q 020101 101 NASAIYVPPPF----------AAAAILEAMEA-ELDLVVCITEGIPQHDMVRV 142 (331)
Q Consensus 101 Dlaii~vp~~~----------~~~~v~~~~~~-Gi~~ivi~t~G~~e~~~~~l 142 (331)
|++++++|... +..+++...+. .-..+|+..+.++....+++
T Consensus 78 dvvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l 130 (411)
T TIGR03026 78 DVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEV 130 (411)
T ss_pred CEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHH
Confidence 99999999653 55555554432 22334555666654444444
No 133
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=96.44 E-value=0.026 Score=54.39 Aligned_cols=65 Identities=9% Similarity=0.080 Sum_probs=49.8
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcc---cccCHHHhhhcCCCCEEEEecChhh
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLP---VFNTVAEAKAETKANASAIYVPPPF 111 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p---~y~sl~dl~~~~~iDlaii~vp~~~ 111 (331)
+..+|.|+|. |++|+.+.+.+..+|++++ .+|+.. +...+.. .+.+++++.. +.|++++++|...
T Consensus 135 ~g~tvgIvG~-G~IG~~vA~~l~afG~~V~-~~~~~~--~~~~~~~~~~~~~~l~e~l~--~aDvvv~~lPlt~ 202 (312)
T PRK15469 135 EDFTIGILGA-GVLGSKVAQSLQTWGFPLR-CWSRSR--KSWPGVQSFAGREELSAFLS--QTRVLINLLPNTP 202 (312)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEeCCC--CCCCCceeecccccHHHHHh--cCCEEEECCCCCH
Confidence 4567899999 9999999999999999987 678754 2222222 2457888887 7899999999543
No 134
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.43 E-value=0.015 Score=56.42 Aligned_cols=92 Identities=15% Similarity=0.154 Sum_probs=62.7
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCceec-------C---cccc-cCHHHhhhcCCCCEEEEecCh
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHL-------G---LPVF-NTVAEAKAETKANASAIYVPP 109 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~~i~-------G---~p~y-~sl~dl~~~~~iDlaii~vp~ 109 (331)
.+||+|+|+||-.|-.+.+.|.++ ..++.....-+..|+.+. | ++.- .+.+++ +..++|++++++|.
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~-~~~~~DvvFlalPh 80 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKI-ELDECDVVFLALPH 80 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhh-hcccCCEEEEecCc
Confidence 578999999999999999999887 567442333322333211 1 1100 122333 22258999999999
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCC
Q 020101 110 PFAAAAILEAMEAELDLVVCITEGIP 135 (331)
Q Consensus 110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~ 135 (331)
....+.+.+..+.|++ ||-.+..|.
T Consensus 81 g~s~~~v~~l~~~g~~-VIDLSadfR 105 (349)
T COG0002 81 GVSAELVPELLEAGCK-VIDLSADFR 105 (349)
T ss_pred hhHHHHHHHHHhCCCe-EEECCcccc
Confidence 9999999999999999 566777654
No 135
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=96.37 E-value=0.014 Score=58.56 Aligned_cols=86 Identities=20% Similarity=0.298 Sum_probs=65.2
Q ss_pred eEEEEEcCCCCCCcHHHHHHHH---cCCeEEEEeCCCCC-CceecCcccccCHHHhh---hcCCCCEEEEecChhh---H
Q 020101 43 TRVICQGITGKNGTFHTEQAIE---YGTKMVGGVTPKKG-GTEHLGLPVFNTVAEAK---AETKANASAIYVPPPF---A 112 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~---~g~~iv~~VnP~~~-g~~i~G~p~y~sl~dl~---~~~~iDlaii~vp~~~---~ 112 (331)
.+++|+|+ |..+..+.+.+.+ .||++++.+|++.. +..+.|+|++.++++++ +++++|-++++.|... .
T Consensus 126 ~rvLIvGa-g~~a~~l~~~L~~~~~~g~~vvG~idd~~~~~~~i~g~pVlg~~~~l~~~i~~~~id~ViIa~p~~~~~~~ 204 (445)
T TIGR03025 126 RRVLIVGT-GEAARELAAALSRNPDLGYRVVGFVDDRPSDRVEVAGLPVLGKLDDLVELVRAHRVDEVIIALPLSEEARI 204 (445)
T ss_pred CcEEEEEC-CHHHHHHHHHHhhCccCCeEEEEEEeCCcccccccCCCcccCCHHHHHHHHHhCCCCEEEEecCcccHHHH
Confidence 56889999 8888888888765 37899988876542 13578999998766654 4568999999988644 4
Q ss_pred HHHHHHHHHcCCcEEEE
Q 020101 113 AAAILEAMEAELDLVVC 129 (331)
Q Consensus 113 ~~~v~~~~~~Gi~~ivi 129 (331)
.+.++.|.+.|++..++
T Consensus 205 ~~ll~~~~~~gv~V~~v 221 (445)
T TIGR03025 205 LELLLQLRDLGVDVRLV 221 (445)
T ss_pred HHHHHHHHhcCCEEEEe
Confidence 56889999999987554
No 136
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=96.37 E-value=0.016 Score=54.01 Aligned_cols=89 Identities=12% Similarity=0.084 Sum_probs=57.5
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEe-CCCCCC-ceecCcc-cccC---HHHhhhc----CC-CCEEEEecCh---
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKGG-TEHLGLP-VFNT---VAEAKAE----TK-ANASAIYVPP--- 109 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~V-nP~~~g-~~i~G~p-~y~s---l~dl~~~----~~-iDlaii~vp~--- 109 (331)
+|+|.|+||..|+.+++.|.+.|+++.+.+ ||.... ..+..++ -|.+ +.+.... .. +|.++.+.|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~~~ 80 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPIPD 80 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCCCC
Confidence 378899999999999999999999877554 443210 1111111 2233 3333310 14 8888877763
Q ss_pred --hhHHHHHHHHHHcCCcEEEEecC
Q 020101 110 --PFAAAAILEAMEAELDLVVCITE 132 (331)
Q Consensus 110 --~~~~~~v~~~~~~Gi~~ivi~t~ 132 (331)
+....+++.|.+.|++.+|..++
T Consensus 81 ~~~~~~~~i~aa~~~gv~~~V~~Ss 105 (285)
T TIGR03649 81 LAPPMIKFIDFARSKGVRRFVLLSA 105 (285)
T ss_pred hhHHHHHHHHHHHHcCCCEEEEeec
Confidence 34567888899999999776654
No 137
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=96.36 E-value=0.012 Score=57.34 Aligned_cols=89 Identities=16% Similarity=0.067 Sum_probs=61.0
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcC-CeEEEEeC-CCCCCceec---Ccccc-------c-----CHH-HhhhcCCCCEEE
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYG-TKMVGGVT-PKKGGTEHL---GLPVF-------N-----TVA-EAKAETKANASA 104 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g-~~iv~~Vn-P~~~g~~i~---G~p~y-------~-----sl~-dl~~~~~iDlai 104 (331)
++|+|+|++|.+|+.+++.+.+.+ +++++.+. ....|+.+. ....| . +++ +.. .++|+++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~DvVf 78 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVAS--KDVDIVF 78 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHh--ccCCEEE
Confidence 478999999999999999888865 68886643 322233321 11111 1 111 111 3799999
Q ss_pred EecChhhHHHHHHHHHHcCCcEEEEecCCC
Q 020101 105 IYVPPPFAAAAILEAMEAELDLVVCITEGI 134 (331)
Q Consensus 105 i~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~ 134 (331)
+++|...+.+..+++.++|++. +..+.-|
T Consensus 79 ~a~p~~~s~~~~~~~~~~G~~V-IDlsg~f 107 (341)
T TIGR00978 79 SALPSEVAEEVEPKLAEAGKPV-FSNASNH 107 (341)
T ss_pred EeCCHHHHHHHHHHHHHCCCEE-EECChhh
Confidence 9999999999999999999986 4455544
No 138
>PRK07574 formate dehydrogenase; Provisional
Probab=96.35 E-value=0.031 Score=55.51 Aligned_cols=107 Identities=15% Similarity=0.115 Sum_probs=67.9
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc---eecCcccccCHHHhhhcCCCCEEEEecChhh-HHHHH
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAI 116 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~-~~~~v 116 (331)
+..+|.|||. |++|+.+++.+..+|+++. .+||..... ...|+..+.+++++.. ..|++++++|-.. ...++
T Consensus 191 ~gktVGIvG~-G~IG~~vA~~l~~fG~~V~-~~dr~~~~~~~~~~~g~~~~~~l~ell~--~aDvV~l~lPlt~~T~~li 266 (385)
T PRK07574 191 EGMTVGIVGA-GRIGLAVLRRLKPFDVKLH-YTDRHRLPEEVEQELGLTYHVSFDSLVS--VCDVVTIHCPLHPETEHLF 266 (385)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEE-EECCCCCchhhHhhcCceecCCHHHHhh--cCCEEEEcCCCCHHHHHHh
Confidence 4566899999 9999999999999999987 778754111 1346666789999987 7899999999533 33333
Q ss_pred H-HHHH-cCCc-EEEEecCCCChhHHHHHHHHHhccCCcE
Q 020101 117 L-EAME-AELD-LVVCITEGIPQHDMVRVKAALNNQSKTR 153 (331)
Q Consensus 117 ~-~~~~-~Gi~-~ivi~t~G~~e~~~~~l~~~a~~~~gi~ 153 (331)
. +.++ .+-. .+|+.+-|- --+...|.++. ++..+.
T Consensus 267 ~~~~l~~mk~ga~lIN~aRG~-iVDe~AL~~AL-~sG~i~ 304 (385)
T PRK07574 267 DADVLSRMKRGSYLVNTARGK-IVDRDAVVRAL-ESGHLA 304 (385)
T ss_pred CHHHHhcCCCCcEEEECCCCc-hhhHHHHHHHH-HhCCcc
Confidence 2 2222 2222 334444453 22344555555 444443
No 139
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=96.35 E-value=0.011 Score=57.33 Aligned_cols=86 Identities=16% Similarity=0.028 Sum_probs=61.5
Q ss_pred EEEEEcCCCCCCcHHHHHHHHc----CCeEEEEeCCCCC-----------------------Cce--ecC--cccc--cC
Q 020101 44 RVICQGITGKNGTFHTEQAIEY----GTKMVGGVTPKKG-----------------------GTE--HLG--LPVF--NT 90 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~----g~~iv~~VnP~~~-----------------------g~~--i~G--~p~y--~s 90 (331)
+|+|+|+ |++|+.+++.+.+. ++++++..+.... |+. +.| ++++ ++
T Consensus 1 ~IaInGf-GrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~ 79 (325)
T TIGR01532 1 RVAINGF-GRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPT 79 (325)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCC
Confidence 4789999 99999999998875 3788854332210 000 113 2333 25
Q ss_pred HHHhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEe
Q 020101 91 VAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCI 130 (331)
Q Consensus 91 l~dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~ 130 (331)
+++++= +.++|+++.+++.....+.+..++++|.+.+++-
T Consensus 80 p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~S 120 (325)
T TIGR01532 80 PEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFS 120 (325)
T ss_pred hhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEec
Confidence 666653 3589999999999999999999999999986653
No 140
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=96.32 E-value=0.027 Score=54.74 Aligned_cols=66 Identities=21% Similarity=0.225 Sum_probs=49.6
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhh
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPF 111 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~ 111 (331)
+..+|+|||. |++|+.+++.+..+|++++ ..|+... ..........+++++.+ +.|++++++|...
T Consensus 145 ~g~~VgIIG~-G~IG~~vA~~L~~~G~~V~-~~d~~~~-~~~~~~~~~~~l~ell~--~aDiVil~lP~t~ 210 (330)
T PRK12480 145 KNMTVAIIGT-GRIGAATAKIYAGFGATIT-AYDAYPN-KDLDFLTYKDSVKEAIK--DADIISLHVPANK 210 (330)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEE-EEeCChh-HhhhhhhccCCHHHHHh--cCCEEEEeCCCcH
Confidence 3457899999 9999999999999999987 6776642 11111233347999887 7899999999654
No 141
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=96.30 E-value=0.017 Score=56.83 Aligned_cols=116 Identities=14% Similarity=0.078 Sum_probs=70.3
Q ss_pred EEEEEcCCCCCCcHHHHHHH-HcCCe---EEEEeCC-CCCCce--ecCcc-cccCHHHhhhcCCCCEEEEecChhhHHHH
Q 020101 44 RVICQGITGKNGTFHTEQAI-EYGTK---MVGGVTP-KKGGTE--HLGLP-VFNTVAEAKAETKANASAIYVPPPFAAAA 115 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~-~~g~~---iv~~VnP-~~~g~~--i~G~p-~y~sl~dl~~~~~iDlaii~vp~~~~~~~ 115 (331)
+|+|+||+|-.|+..++.|. +..|. ++ .+.. +..|+. ..|.. ...++++.....++|+++.+.+.+.+.+.
T Consensus 2 ~VavvGATG~VG~~ll~~L~~e~~fp~~~~~-~~ss~~s~g~~~~f~~~~~~v~~~~~~~~~~~vDivffa~g~~~s~~~ 80 (366)
T TIGR01745 2 NVGLVGWRGMVGSVLMQRMQEERDFDAIRPV-FFSTSQLGQAAPSFGGTTGTLQDAFDIDALKALDIIITCQGGDYTNEI 80 (366)
T ss_pred eEEEEcCcCHHHHHHHHHHHhCCCCccccEE-EEEchhhCCCcCCCCCCcceEEcCcccccccCCCEEEEcCCHHHHHHH
Confidence 68999999999999999888 44554 33 3433 222222 11222 11122221011279999999999999999
Q ss_pred HHHHHHcCCcEEEEecC-CCChh-H---------HHHHHHHHhccCCcE-EEccCCCCc
Q 020101 116 ILEAMEAELDLVVCITE-GIPQH-D---------MVRVKAALNNQSKTR-LVGPNCPGV 162 (331)
Q Consensus 116 v~~~~~~Gi~~ivi~t~-G~~e~-~---------~~~l~~~a~~~~gi~-viGPnc~Gi 162 (331)
..++.++|...+|+=.+ -|.-+ + .+.+... .+.|+. +..|||.-+
T Consensus 81 ~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~~--~~~gi~~ianPNCst~ 137 (366)
T TIGR01745 81 YPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDG--LNNGIRTFVGGNCTVS 137 (366)
T ss_pred HHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHhH--HhCCcCeEECcCHHHH
Confidence 99999999875554233 23211 1 1223221 246765 889999543
No 142
>PLN03139 formate dehydrogenase; Provisional
Probab=96.29 E-value=0.035 Score=55.12 Aligned_cols=107 Identities=12% Similarity=0.115 Sum_probs=67.6
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc---eecCcccccCHHHhhhcCCCCEEEEecCh-hhHHHHH
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVFNTVAEAKAETKANASAIYVPP-PFAAAAI 116 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~-~~~~~~v 116 (331)
...+|.|||. |++|+.+++.+..+|.+++ .+||..... ...|+..+.+++++.. +.|++++++|- +....++
T Consensus 198 ~gktVGIVG~-G~IG~~vA~~L~afG~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~--~sDvV~l~lPlt~~T~~li 273 (386)
T PLN03139 198 EGKTVGTVGA-GRIGRLLLQRLKPFNCNLL-YHDRLKMDPELEKETGAKFEEDLDAMLP--KCDVVVINTPLTEKTRGMF 273 (386)
T ss_pred CCCEEEEEee-cHHHHHHHHHHHHCCCEEE-EECCCCcchhhHhhcCceecCCHHHHHh--hCCEEEEeCCCCHHHHHHh
Confidence 3556889999 9999999999999999987 577753111 2346666779999987 79999999994 3333443
Q ss_pred -HHHHH-cCCcEEEEecCCCC-hhHHHHHHHHHhccCCcE
Q 020101 117 -LEAME-AELDLVVCITEGIP-QHDMVRVKAALNNQSKTR 153 (331)
Q Consensus 117 -~~~~~-~Gi~~ivi~t~G~~-e~~~~~l~~~a~~~~gi~ 153 (331)
++.++ .+-.. +++..+-. --+.+.|.++. ++..+.
T Consensus 274 ~~~~l~~mk~ga-~lIN~aRG~iVDe~AL~~AL-~sG~l~ 311 (386)
T PLN03139 274 NKERIAKMKKGV-LIVNNARGAIMDTQAVADAC-SSGHIG 311 (386)
T ss_pred CHHHHhhCCCCe-EEEECCCCchhhHHHHHHHH-HcCCce
Confidence 22222 23333 33333321 23444555555 455444
No 143
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=96.29 E-value=0.02 Score=56.67 Aligned_cols=63 Identities=17% Similarity=0.208 Sum_probs=49.9
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecCh
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP 109 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~ 109 (331)
+..+|.|||. |++|+.+.+.+..+|.+++ ..||.. .+......|.+++++.. +.|++++.+|-
T Consensus 115 ~gktvGIIG~-G~IG~~vA~~l~a~G~~V~-~~dp~~--~~~~~~~~~~~L~ell~--~sDiI~lh~PL 177 (378)
T PRK15438 115 HDRTVGIVGV-GNVGRRLQARLEALGIKTL-LCDPPR--ADRGDEGDFRSLDELVQ--EADILTFHTPL 177 (378)
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHCCCEEE-EECCcc--cccccccccCCHHHHHh--hCCEEEEeCCC
Confidence 4567899999 9999999999999999987 778864 22111124678999987 78999999984
No 144
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=96.22 E-value=0.022 Score=57.27 Aligned_cols=85 Identities=19% Similarity=0.270 Sum_probs=63.9
Q ss_pred eEEEEEcCCCCCCcHHHHHHHH---cCCeEEEEeCCCC--CCceecCcccccCHHHhh---hcCCCCEEEEecChh---h
Q 020101 43 TRVICQGITGKNGTFHTEQAIE---YGTKMVGGVTPKK--GGTEHLGLPVFNTVAEAK---AETKANASAIYVPPP---F 111 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~---~g~~iv~~VnP~~--~g~~i~G~p~y~sl~dl~---~~~~iDlaii~vp~~---~ 111 (331)
.+|+|+|+ |..|..+.+.+.+ .||++++.+|.+. .+.. .|+|++.++++++ +++++|-++++.|.. .
T Consensus 129 ~rvLIiGa-g~~~~~l~~~L~~~~~~g~~vvG~idd~~~~~~~~-~gvpVlg~~~dl~~~i~~~~vd~ViIA~p~~~~~~ 206 (451)
T TIGR03023 129 RRVLIVGA-GELGRRLAERLARNPELGYRVVGFFDDRPDARTGV-RGVPVLGKLDDLEELIREGEVDEVYIALPLAAEDR 206 (451)
T ss_pred CcEEEEeC-CHHHHHHHHHHHhCccCCcEEEEEEeCCCcccccc-CCCCccCCHHHHHHHHHhcCCCEEEEeeCcccHHH
Confidence 56899999 7788888888765 3789998776443 2233 7899998766654 356899999999874 3
Q ss_pred HHHHHHHHHHcCCcEEEE
Q 020101 112 AAAAILEAMEAELDLVVC 129 (331)
Q Consensus 112 ~~~~v~~~~~~Gi~~ivi 129 (331)
..++++.|.+.|++..++
T Consensus 207 ~~~ll~~~~~~gv~V~vv 224 (451)
T TIGR03023 207 ILELLDALEDLTVDVRLV 224 (451)
T ss_pred HHHHHHHHHhcCCEEEEe
Confidence 567888999999987554
No 145
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=96.19 E-value=0.024 Score=54.55 Aligned_cols=81 Identities=12% Similarity=0.135 Sum_probs=59.8
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHHHH
Q 020101 43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAME 121 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~ 121 (331)
.+|+|+|+||-.|..+++.|.++ .+++++...-+. ... .+.+++.+ ++|++++++|.+.+.+.+.++.+
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~-------~~~-~~~~~~~~--~~D~vFlalp~~~s~~~~~~~~~ 71 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR-------KDA-AERAKLLN--AADVAILCLPDDAAREAVSLVDN 71 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc-------cCc-CCHhHhhc--CCCEEEECCCHHHHHHHHHHHHh
Confidence 36899999999999999999987 567774432211 001 13455545 69999999999999999999989
Q ss_pred cCCcEEEEecCCC
Q 020101 122 AELDLVVCITEGI 134 (331)
Q Consensus 122 ~Gi~~ivi~t~G~ 134 (331)
.|++. |-.+.-|
T Consensus 72 ~g~~V-IDlSadf 83 (310)
T TIGR01851 72 PNTCI-IDASTAY 83 (310)
T ss_pred CCCEE-EECChHH
Confidence 88874 6567544
No 146
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=96.15 E-value=0.042 Score=52.23 Aligned_cols=84 Identities=21% Similarity=0.185 Sum_probs=58.4
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeE-EEEeCCCCCCc---eecCc-ccc-cCH-HHhhhcCCCCEEEEecChhhHHH
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKM-VGGVTPKKGGT---EHLGL-PVF-NTV-AEAKAETKANASAIYVPPPFAAA 114 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~i-v~~VnP~~~g~---~i~G~-p~y-~sl-~dl~~~~~iDlaii~vp~~~~~~ 114 (331)
..+|+|+|. |.||+.+.+.+++.|+.+ +.+.++..... ...|+ ..+ .+. .+... ..|++|++||.....+
T Consensus 3 ~~~v~IvG~-GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~--~aD~VivavPi~~~~~ 79 (279)
T COG0287 3 SMKVGIVGL-GLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAA--EADLVIVAVPIEATEE 79 (279)
T ss_pred CcEEEEECC-chHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcc--cCCEEEEeccHHHHHH
Confidence 467889998 999999999999999864 55788765211 11333 222 222 22222 5799999999999999
Q ss_pred HHHHHHH-cCCcEEE
Q 020101 115 AILEAME-AELDLVV 128 (331)
Q Consensus 115 ~v~~~~~-~Gi~~iv 128 (331)
++++... .....+|
T Consensus 80 ~l~~l~~~l~~g~iv 94 (279)
T COG0287 80 VLKELAPHLKKGAIV 94 (279)
T ss_pred HHHHhcccCCCCCEE
Confidence 9999985 4444444
No 147
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=96.12 E-value=0.083 Score=53.06 Aligned_cols=125 Identities=16% Similarity=0.268 Sum_probs=87.4
Q ss_pred CCCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccC-CCcHHHHHHHH
Q 020101 179 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIG-GTAEEDAAALI 257 (331)
Q Consensus 179 ~~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~-g~~~~~~~~f~ 257 (331)
..|+|+.+.--++++.+.++.....|--..-|.-+|+.+ ..-.+.+.++-+..||++|+|++=+=++ =+-..-+..++
T Consensus 290 ldG~Ig~~vnGaGlamaTmD~i~~~Gg~pANFlD~GG~a-~~~~v~~a~~ii~~d~~vk~iliNIfGGI~~cd~iA~gii 368 (422)
T PLN00124 290 LDGEIGCMVNGAGLAMATMDIIKLHGGSPANFLDVGGNA-SEQQVVEAFKILTSDDKVKAILVNIFGGIMKCDVIASGIV 368 (422)
T ss_pred CCCcEEEEecCchHHHHHHHHHHHcCCCcceeeecCCCC-CHHHHHHHHHHHhcCCCCcEEEEEecCCccchHHHHHHHH
Confidence 569999999999999999999999999999999999976 3566778888899999999998832231 00112223344
Q ss_pred HHhC---CCCCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHHH
Q 020101 258 KESG---TEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK 325 (331)
Q Consensus 258 ~a~r---~~KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~~~~a~~~ 325 (331)
++++ .++|||+=..|... +.=...|+.+|+ .+...++|.++++...+
T Consensus 369 ~a~~~~~~~~pivvRl~Gtn~--------------------~~g~~~l~~~~~-~~~~~~~l~~A~~~~v~ 418 (422)
T PLN00124 369 NAAKQVGLKVPLVVRLEGTNV--------------------DQGKRILKESGM-TLITAEDLDDAAEKAVK 418 (422)
T ss_pred HHHHhcCCCCcEEEEcCCCCH--------------------HHHHHHHHhCCC-CeEEcCCHHHHHHHHHH
Confidence 4544 68899986666433 333678889994 23344444455554443
No 148
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.12 E-value=0.021 Score=54.42 Aligned_cols=93 Identities=18% Similarity=0.187 Sum_probs=58.7
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce-------ecC--------------cccccCHHHhhhcC
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE-------HLG--------------LPVFNTVAEAKAET 98 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~-------i~G--------------~p~y~sl~dl~~~~ 98 (331)
+..+|+|||+ |.||..+...+.+.|++++ .+|++... +. ..| +....++++..+
T Consensus 3 ~~~~I~vIGa-G~mG~~iA~~l~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-- 78 (311)
T PRK06130 3 PIQNLAIIGA-GTMGSGIAALFARKGLQVV-LIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVS-- 78 (311)
T ss_pred CccEEEEECC-CHHHHHHHHHHHhCCCeEE-EEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhc--
Confidence 3457899999 9999999999998899876 66654310 00 011 123345666555
Q ss_pred CCCEEEEecChhh--HHHHHHHHHHc-CCcEEE-EecCCCChh
Q 020101 99 KANASAIYVPPPF--AAAAILEAMEA-ELDLVV-CITEGIPQH 137 (331)
Q Consensus 99 ~iDlaii~vp~~~--~~~~v~~~~~~-Gi~~iv-i~t~G~~e~ 137 (331)
+.|++++++|++. ..+++.++... .-+.++ ..+.|.+.+
T Consensus 79 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~ 121 (311)
T PRK06130 79 GADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPIT 121 (311)
T ss_pred cCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHH
Confidence 6899999999875 45566555442 223333 355677533
No 149
>PLN02858 fructose-bisphosphate aldolase
Probab=96.10 E-value=0.031 Score=63.79 Aligned_cols=110 Identities=19% Similarity=0.155 Sum_probs=74.5
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce---ecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHH
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAIL 117 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~---i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~ 117 (331)
.+.+|.+||. |+||....++|.+.|+++. ..|.+....+ -.|....+|..|+.+ +.|++++++|...+.+.+-
T Consensus 3 ~~~~IGfIGL-G~MG~~mA~~L~~~G~~v~-v~dr~~~~~~~l~~~Ga~~~~s~~e~a~--~advVi~~l~~~~~v~~V~ 78 (1378)
T PLN02858 3 SAGVVGFVGL-DSLSFELASSLLRSGFKVQ-AFEISTPLMEKFCELGGHRCDSPAEAAK--DAAALVVVLSHPDQVDDVF 78 (1378)
T ss_pred CCCeEEEEch-hHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHcCCeecCCHHHHHh--cCCEEEEEcCChHHHHHHH
Confidence 3567899999 9999999999999999866 5565541111 247788899999987 7999999999876655442
Q ss_pred ----HHHHc-CCcEEEEecCCCChhHHHHHHHHHhccCC--cEEE
Q 020101 118 ----EAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSK--TRLV 155 (331)
Q Consensus 118 ----~~~~~-Gi~~ivi~t~G~~e~~~~~l~~~a~~~~g--i~vi 155 (331)
.+++. ....+|+-.+-.+.+..+++.+.+ ++.| +.++
T Consensus 79 ~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l-~~~g~~~~~l 122 (1378)
T PLN02858 79 FGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKL-TERKEQIFLV 122 (1378)
T ss_pred hchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHH-HhcCCceEEE
Confidence 23332 122345444444556666676665 5566 6654
No 150
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.09 E-value=0.0086 Score=56.65 Aligned_cols=92 Identities=16% Similarity=0.080 Sum_probs=56.7
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-cee---------c-----------------CcccccCHHHhhh
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH---------L-----------------GLPVFNTVAEAKA 96 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~i---------~-----------------G~p~y~sl~dl~~ 96 (331)
+|+|||+ |.||..++..+.+.|++++ .+|++... +.. . .+....++++..+
T Consensus 3 ~V~VIG~-G~mG~~iA~~la~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (288)
T PRK09260 3 KLVVVGA-GVMGRGIAYVFAVSGFQTT-LVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA 80 (288)
T ss_pred EEEEECc-cHHHHHHHHHHHhCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence 5889999 9999999999999999866 55654310 000 0 1233456766665
Q ss_pred cCCCCEEEEecChhhHH--HHHHHHHHcCC-cE-EEEecCCCChhHH
Q 020101 97 ETKANASAIYVPPPFAA--AAILEAMEAEL-DL-VVCITEGIPQHDM 139 (331)
Q Consensus 97 ~~~iDlaii~vp~~~~~--~~v~~~~~~Gi-~~-ivi~t~G~~e~~~ 139 (331)
+.|+++.++|.+... .++.++.+.-- .. +++-++.++.++.
T Consensus 81 --~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l 125 (288)
T PRK09260 81 --DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEI 125 (288)
T ss_pred --CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHH
Confidence 799999999987642 34444333222 22 2233555665543
No 151
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=96.05 E-value=0.029 Score=52.84 Aligned_cols=89 Identities=16% Similarity=0.156 Sum_probs=60.6
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce--ecCcc-----------cccCHHHhhhcCCCCEEEEecCh
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLP-----------VFNTVAEAKAETKANASAIYVPP 109 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~--i~G~p-----------~y~sl~dl~~~~~iDlaii~vp~ 109 (331)
+|+|+|+ |.+|..+...|.+.|+++. .+++.... +. ..|.. ...+.+++ + ++|++++++|+
T Consensus 2 ~I~IiG~-G~~G~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~--~~d~vila~k~ 76 (304)
T PRK06522 2 KIAILGA-GAIGGLFGAALAQAGHDVT-LVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-G--PQDLVILAVKA 76 (304)
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCeEE-EEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-C--CCCEEEEeccc
Confidence 6889999 9999999999988888866 55542210 11 12332 23345554 3 79999999999
Q ss_pred hhHHHHHHHHHHc-CC-cEEEEecCCCChh
Q 020101 110 PFAAAAILEAMEA-EL-DLVVCITEGIPQH 137 (331)
Q Consensus 110 ~~~~~~v~~~~~~-Gi-~~ivi~t~G~~e~ 137 (331)
..+.++++.+... +- ..++.++.|+...
T Consensus 77 ~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~ 106 (304)
T PRK06522 77 YQLPAALPSLAPLLGPDTPVLFLQNGVGHL 106 (304)
T ss_pred ccHHHHHHHHhhhcCCCCEEEEecCCCCcH
Confidence 9998888887653 22 2566678898633
No 152
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=96.04 E-value=0.033 Score=53.63 Aligned_cols=105 Identities=16% Similarity=0.105 Sum_probs=66.1
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhh-HHHHH--H
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAI--L 117 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~-~~~~v--~ 117 (331)
...+|.|+|. |++|+.+++.+..+|.+++ .+||... ....+++ |.+++++.. ..|++++.+|-.. ....+ +
T Consensus 144 ~gktvGIiG~-G~IG~~vA~~~~~fgm~V~-~~d~~~~-~~~~~~~-~~~l~ell~--~sDvv~lh~Plt~~T~~li~~~ 217 (311)
T PRK08410 144 KGKKWGIIGL-GTIGKRVAKIAQAFGAKVV-YYSTSGK-NKNEEYE-RVSLEELLK--TSDIISIHAPLNEKTKNLIAYK 217 (311)
T ss_pred CCCEEEEECC-CHHHHHHHHHHhhcCCEEE-EECCCcc-ccccCce-eecHHHHhh--cCCEEEEeCCCCchhhcccCHH
Confidence 4567889999 9999999999999999988 7888542 2223443 568999998 7899999999432 22222 2
Q ss_pred HHHHcCCcEEEEecCCCCh-hHHHHHHHHHhccCCcE
Q 020101 118 EAMEAELDLVVCITEGIPQ-HDMVRVKAALNNQSKTR 153 (331)
Q Consensus 118 ~~~~~Gi~~ivi~t~G~~e-~~~~~l~~~a~~~~gi~ 153 (331)
.....+-.. +++..+-.+ -+...|.++. ++..+.
T Consensus 218 ~~~~Mk~~a-~lIN~aRG~vVDe~AL~~AL-~~g~i~ 252 (311)
T PRK08410 218 ELKLLKDGA-ILINVGRGGIVNEKDLAKAL-DEKDIY 252 (311)
T ss_pred HHHhCCCCe-EEEECCCccccCHHHHHHHH-HcCCeE
Confidence 333334333 333333211 2333455554 455454
No 153
>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional
Probab=96.04 E-value=0.036 Score=56.53 Aligned_cols=86 Identities=13% Similarity=0.030 Sum_probs=62.5
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHc---CCeEEEEeCCCCCCceecCcccccCHHHhh---hcCCCCEEEEecChh---hHH
Q 020101 43 TRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGGTEHLGLPVFNTVAEAK---AETKANASAIYVPPP---FAA 113 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~---g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~---~~~~iDlaii~vp~~---~~~ 113 (331)
.+++|+|+ |..|+.+++.+.+. |+++++.+|.+..+..+.|+|++.+.+++. .+..+|+ +++.|.. ...
T Consensus 147 rrvLIIGa-G~~a~~l~~~L~~~~~~g~~vVGfIDd~~~~~~i~gvPVlg~~d~l~~~~~~~~v~v-IIAip~~~~~~r~ 224 (476)
T PRK15204 147 KKTIILGS-GQNARGAYSALQSEEMMGFDVIAFFDTDASDAEINMLPVIKDTEIIWDLNRTGDVHY-ILAYEYTELEKTH 224 (476)
T ss_pred CeEEEEEC-CHHHHHHHHHHHhCccCCcEEEEEEcCCccccccCCCcccCCHHHHHHHHHhCCCcE-EEEeCcCcHHHHH
Confidence 45889999 88888888888764 899998898665435688999998866542 2235675 7788743 445
Q ss_pred HHHHHHHHcCCcEEEEe
Q 020101 114 AAILEAMEAELDLVVCI 130 (331)
Q Consensus 114 ~~v~~~~~~Gi~~ivi~ 130 (331)
+.+++|.+.|++.+.+.
T Consensus 225 ~il~~l~~~gv~~V~vI 241 (476)
T PRK15204 225 FWLRELSKHHCRSVTVV 241 (476)
T ss_pred HHHHHHhhcCCeEEEEe
Confidence 78889988898754433
No 154
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.02 E-value=0.0079 Score=50.96 Aligned_cols=107 Identities=15% Similarity=0.123 Sum_probs=63.9
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcC-CeEEEEeCCCCCC-ce---ecCc----ccccCHHHhhhcCCCCEEEEecChhh
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGG-TE---HLGL----PVFNTVAEAKAETKANASAIYVPPPF 111 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g-~~iv~~VnP~~~g-~~---i~G~----p~y~sl~dl~~~~~iDlaii~vp~~~ 111 (331)
+..+|+|+|+ |.+|+.+.+.+.+.| .+++ .+|++... ++ ..+. ..+.+.+++.+ ++|++|.++|+..
T Consensus 18 ~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~-v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Dvvi~~~~~~~ 93 (155)
T cd01065 18 KGKKVLILGA-GGAARAVAYALAELGAAKIV-IVNRTLEKAKALAERFGELGIAIAYLDLEELLA--EADLIINTTPVGM 93 (155)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEE-EEcCCHHHHHHHHHHHhhcccceeecchhhccc--cCCEEEeCcCCCC
Confidence 4567889999 999999999998886 4444 77765411 11 1122 13456666554 7999999999987
Q ss_pred H----HHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101 112 A----AAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156 (331)
Q Consensus 112 ~----~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG 156 (331)
+ ....+.+++.|. .++-.+.- ++.. ++.+.+ ++.|++++.
T Consensus 94 ~~~~~~~~~~~~~~~~~-~v~D~~~~-~~~~--~l~~~~-~~~g~~~v~ 137 (155)
T cd01065 94 KPGDELPLPPSLLKPGG-VVYDVVYN-PLET--PLLKEA-RALGAKTID 137 (155)
T ss_pred CCCCCCCCCHHHcCCCC-EEEEcCcC-CCCC--HHHHHH-HHCCCceeC
Confidence 5 112233444443 22333322 2222 555556 677877664
No 155
>PRK13243 glyoxylate reductase; Reviewed
Probab=95.98 E-value=0.049 Score=52.95 Aligned_cols=105 Identities=16% Similarity=0.219 Sum_probs=65.5
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc--eecCcccccCHHHhhhcCCCCEEEEecChhh-HHHHH-
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAI- 116 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~--~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~-~~~~v- 116 (331)
+..+|.|||. |++|+.+.+.+..+|++++ .+||..... ...|.+ +.+++++.. +.|++++++|... ...++
T Consensus 149 ~gktvgIiG~-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~~~~~~~~-~~~l~ell~--~aDiV~l~lP~t~~T~~~i~ 223 (333)
T PRK13243 149 YGKTIGIIGF-GRIGQAVARRAKGFGMRIL-YYSRTRKPEAEKELGAE-YRPLEELLR--ESDFVSLHVPLTKETYHMIN 223 (333)
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHCCCEEE-EECCCCChhhHHHcCCE-ecCHHHHHh--hCCEEEEeCCCChHHhhccC
Confidence 4567889999 9999999999999999977 778754211 123443 468999887 7899999999643 33333
Q ss_pred HHHHHc-CCc-EEEEecCCCChhHHHHHHHHHhccCCc
Q 020101 117 LEAMEA-ELD-LVVCITEGIPQHDMVRVKAALNNQSKT 152 (331)
Q Consensus 117 ~~~~~~-Gi~-~ivi~t~G~~e~~~~~l~~~a~~~~gi 152 (331)
++..++ +-. .+++.+.|-- -+...|.+.. ++..+
T Consensus 224 ~~~~~~mk~ga~lIN~aRg~~-vd~~aL~~aL-~~g~i 259 (333)
T PRK13243 224 EERLKLMKPTAILVNTARGKV-VDTKALVKAL-KEGWI 259 (333)
T ss_pred HHHHhcCCCCeEEEECcCchh-cCHHHHHHHH-HcCCe
Confidence 233332 222 2344444532 2334455544 44433
No 156
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=95.94 E-value=0.0076 Score=53.08 Aligned_cols=64 Identities=19% Similarity=0.348 Sum_probs=48.5
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce---ecCcccccCHHHhhhcCCCCEEEEecCh
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNTVAEAKAETKANASAIYVPP 109 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~---i~G~p~y~sl~dl~~~~~iDlaii~vp~ 109 (331)
...+|.|+|. |++|+.+++.++.+|.+++ .+||...... ..+. .|.+++|+.. ..|++++..|.
T Consensus 35 ~g~tvgIiG~-G~IG~~vA~~l~~fG~~V~-~~d~~~~~~~~~~~~~~-~~~~l~ell~--~aDiv~~~~pl 101 (178)
T PF02826_consen 35 RGKTVGIIGY-GRIGRAVARRLKAFGMRVI-GYDRSPKPEEGADEFGV-EYVSLDELLA--QADIVSLHLPL 101 (178)
T ss_dssp TTSEEEEEST-SHHHHHHHHHHHHTT-EEE-EEESSCHHHHHHHHTTE-EESSHHHHHH--H-SEEEE-SSS
T ss_pred CCCEEEEEEE-cCCcCeEeeeeecCCceeE-EecccCChhhhcccccc-eeeehhhhcc--hhhhhhhhhcc
Confidence 4567899999 9999999999999999987 8888762111 2234 4669999988 79999999994
No 157
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=95.90 E-value=0.039 Score=55.59 Aligned_cols=82 Identities=18% Similarity=0.192 Sum_probs=60.6
Q ss_pred eEEEEEcCCCCCCcHHHHHHHH---cCCeEEEEeCCCC--CCceecCcccccCHHHh---hhcCCCCEEEEecCh---hh
Q 020101 43 TRVICQGITGKNGTFHTEQAIE---YGTKMVGGVTPKK--GGTEHLGLPVFNTVAEA---KAETKANASAIYVPP---PF 111 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~---~g~~iv~~VnP~~--~g~~i~G~p~y~sl~dl---~~~~~iDlaii~vp~---~~ 111 (331)
.+++|+|+ |..|..+.+.+.+ .|+++++.+++.. .+..+.|+|++.+ +++ ..++++|.++++.|. +.
T Consensus 126 rrvlIiGa-g~~~~~l~~~l~~~~~~g~~vvGfidd~~~~~~~~i~g~pVlg~-~~l~~~i~~~~id~ViIAip~~~~~~ 203 (456)
T TIGR03022 126 RPAVIIGA-GQNAAILYRALQSNPQLGLRPLAVVDTDPAASGRLLTGLPVVGA-DDALRLYARTRYAYVIVAMPGTQAED 203 (456)
T ss_pred ceEEEEeC-CHHHHHHHHHHhhCccCCcEEEEEEeCCccccccccCCCcccCh-hHHHHHHHhCCCCEEEEecCCccHHH
Confidence 45889999 7788888888764 3799998887542 2356789999876 554 344679999999983 45
Q ss_pred HHHHHHHHHHcCCcE
Q 020101 112 AAAAILEAMEAELDL 126 (331)
Q Consensus 112 ~~~~v~~~~~~Gi~~ 126 (331)
..+.++.|.+.|+..
T Consensus 204 ~~~ll~~l~~~~v~~ 218 (456)
T TIGR03022 204 MARLVRKLGALHFRN 218 (456)
T ss_pred HHHHHHHHHhCCCeE
Confidence 667788888888833
No 158
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=95.90 E-value=0.018 Score=56.07 Aligned_cols=85 Identities=15% Similarity=0.052 Sum_probs=57.5
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCe---EEEEeCCCCCCcee--cCcc-cccC--HHHhhhcCCCCEEEEecChhhHHHH
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTK---MVGGVTPKKGGTEH--LGLP-VFNT--VAEAKAETKANASAIYVPPPFAAAA 115 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~---iv~~VnP~~~g~~i--~G~p-~y~s--l~dl~~~~~iDlaii~vp~~~~~~~ 115 (331)
+|+|+||||..|+.+++.|.+.++. ++.....+..|+.+ .|.. .+.+ .+++ . ++|++++++|.....+.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~-~--~~D~v~~a~g~~~s~~~ 77 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESF-E--GIDIALFSAGGSVSKEF 77 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHh-c--CCCEEEECCCHHHHHHH
Confidence 4789999999999999999886654 33222333333332 2221 2222 2233 3 79999999999999999
Q ss_pred HHHHHHcCCcEEEEecC
Q 020101 116 ILEAMEAELDLVVCITE 132 (331)
Q Consensus 116 v~~~~~~Gi~~ivi~t~ 132 (331)
+.++.++|++ +|=.++
T Consensus 78 a~~~~~~G~~-VID~ss 93 (339)
T TIGR01296 78 APKAAKCGAI-VIDNTS 93 (339)
T ss_pred HHHHHHCCCE-EEECCH
Confidence 9999999985 343444
No 159
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.85 E-value=0.026 Score=53.17 Aligned_cols=91 Identities=10% Similarity=0.076 Sum_probs=57.3
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce--------------ec-------------CcccccCHHHhh
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--------------HL-------------GLPVFNTVAEAK 95 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~--------------i~-------------G~p~y~sl~dl~ 95 (331)
.+|+|||+ |.||..++..+...|++++ .+|++...-+ -. ++....+++++
T Consensus 4 ~kI~VIG~-G~mG~~ia~~la~~g~~V~-~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~- 80 (282)
T PRK05808 4 QKIGVIGA-GTMGNGIAQVCAVAGYDVV-MVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDL- 80 (282)
T ss_pred cEEEEEcc-CHHHHHHHHHHHHCCCceE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh-
Confidence 46889999 9999999999999899866 5665431000 01 22334456553
Q ss_pred hcCCCCEEEEecChhhH--HHHHHHHHHc-CCcEEE-EecCCCChhH
Q 020101 96 AETKANASAIYVPPPFA--AAAILEAMEA-ELDLVV-CITEGIPQHD 138 (331)
Q Consensus 96 ~~~~iDlaii~vp~~~~--~~~v~~~~~~-Gi~~iv-i~t~G~~e~~ 138 (331)
+ +.|++++++|++.. .+++.++.+. .-..++ --++|++.++
T Consensus 81 ~--~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~ 125 (282)
T PRK05808 81 K--DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITE 125 (282)
T ss_pred c--cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH
Confidence 3 68999999997555 5666665543 223333 2345665444
No 160
>PRK06932 glycerate dehydrogenase; Provisional
Probab=95.81 E-value=0.044 Score=52.81 Aligned_cols=62 Identities=18% Similarity=0.128 Sum_probs=48.6
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecCh
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP 109 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~ 109 (331)
+..+|.|+|. |++|+.+.+.+..+|.+++ .+++.. ...... -|.+++++.. ..|++++.+|-
T Consensus 146 ~gktvgIiG~-G~IG~~va~~l~~fg~~V~-~~~~~~--~~~~~~-~~~~l~ell~--~sDiv~l~~Pl 207 (314)
T PRK06932 146 RGSTLGVFGK-GCLGTEVGRLAQALGMKVL-YAEHKG--ASVCRE-GYTPFEEVLK--QADIVTLHCPL 207 (314)
T ss_pred CCCEEEEECC-CHHHHHHHHHHhcCCCEEE-EECCCc--cccccc-ccCCHHHHHH--hCCEEEEcCCC
Confidence 4567899999 9999999999999999987 577653 211111 2678999988 78999999994
No 161
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=95.80 E-value=0.042 Score=55.77 Aligned_cols=84 Identities=12% Similarity=0.022 Sum_probs=61.1
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHc---CCeEEEEeCCCCCCceecCcccccCHHHhh---hcCCCCEEEEecChh---hHH
Q 020101 43 TRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGGTEHLGLPVFNTVAEAK---AETKANASAIYVPPP---FAA 113 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~---g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~---~~~~iDlaii~vp~~---~~~ 113 (331)
.+|+|+|+ |..|..+.+.+++. |+++++.+|.+.. .-.++|++.++++++ +++++|-++++.|.. ...
T Consensus 144 rrVLIvGa-G~~g~~l~~~L~~~~~~g~~vVGfiDdd~~--~g~~VpvlG~~~dL~~~v~~~~IdeViIAip~~~~~~l~ 220 (463)
T PRK10124 144 RMVAVAGD-LPAGQMLLESFRNEPWLGFEVVGVYHDPKP--GGVSNDWAGNLQQLVEDAKAGKIHNVYIAMSMCDGARVK 220 (463)
T ss_pred CcEEEEEC-CHHHHHHHHHHhcCccCCeEEEEEEeCCcc--ccCCCCcCCCHHHHHHHHHhCCCCEEEEeCCCcchHHHH
Confidence 45889999 88888888888753 7899988875431 112345587766654 457899999999854 456
Q ss_pred HHHHHHHHcCCcEEEE
Q 020101 114 AAILEAMEAELDLVVC 129 (331)
Q Consensus 114 ~~v~~~~~~Gi~~ivi 129 (331)
++++.|.+.+++..++
T Consensus 221 ell~~~~~~~v~V~iv 236 (463)
T PRK10124 221 KLVRQLADTTCSVLLI 236 (463)
T ss_pred HHHHHHHHcCCeEEEe
Confidence 6788899999987554
No 162
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=95.80 E-value=0.054 Score=50.30 Aligned_cols=119 Identities=17% Similarity=0.192 Sum_probs=79.8
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEE-EeCCCCCCc-eecCcccccCHHHhhhc-CCCCEEEEecChh-hHHHHHHHH
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT-EHLGLPVFNTVAEAKAE-TKANASAIYVPPP-FAAAAILEA 119 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~-~VnP~~~g~-~i~G~p~y~sl~dl~~~-~~iDlaii~vp~~-~~~~~v~~~ 119 (331)
++.+||. ||||..+.+++.+.|.++|+ -+||....+ .-.|...-.|++++..+ ..|.++-+-+|+- .+..+++++
T Consensus 2 ~iGmiGL-GrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~l 80 (300)
T COG1023 2 QIGMIGL-GRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDDL 80 (300)
T ss_pred cceeecc-chhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHHH
Confidence 4677999 99999999999999999663 477765311 13566667788888765 4578888999987 677777776
Q ss_pred HHcCCcEEEEecCCCCh-hHHHHHHHHHhccCCcEEEccCCCCccc
Q 020101 120 MEAELDLVVCITEGIPQ-HDMVRVKAALNNQSKTRLVGPNCPGVIK 164 (331)
Q Consensus 120 ~~~Gi~~ivi~t~G~~e-~~~~~l~~~a~~~~gi~viGPnc~Gi~~ 164 (331)
..+==+.=+++-.|-+. .|..+..+.. +++|+.++--.+.|=+.
T Consensus 81 a~~L~~GDivIDGGNS~y~Ds~rr~~~l-~~kgi~flD~GTSGG~~ 125 (300)
T COG1023 81 APLLSAGDIVIDGGNSNYKDSLRRAKLL-AEKGIHFLDVGTSGGVW 125 (300)
T ss_pred HhhcCCCCEEEECCccchHHHHHHHHHH-HhcCCeEEeccCCCCch
Confidence 65432222445666543 3433333333 58899988776655443
No 163
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=95.78 E-value=0.037 Score=57.07 Aligned_cols=107 Identities=21% Similarity=0.291 Sum_probs=67.2
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc--eecCcccccCHHHhhhcCCCCEEEEecChh-hHHHHH-
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPP-FAAAAI- 116 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~--~i~G~p~y~sl~dl~~~~~iDlaii~vp~~-~~~~~v- 116 (331)
...+|.|+|. |++|+.+++.++.+|++++ .+||....+ ...|++.+++++++.. +.|++++++|.. ....++
T Consensus 137 ~gktvgIiG~-G~IG~~vA~~l~~fG~~V~-~~d~~~~~~~~~~~g~~~~~~l~ell~--~aDvV~l~lPlt~~T~~li~ 212 (525)
T TIGR01327 137 YGKTLGVIGL-GRIGSIVAKRAKAFGMKVL-AYDPYISPERAEQLGVELVDDLDELLA--RADFITVHTPLTPETRGLIG 212 (525)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEE-EECCCCChhHHHhcCCEEcCCHHHHHh--hCCEEEEccCCChhhccCcC
Confidence 3466889999 9999999999999999987 788753111 2346655668999987 799999999954 333333
Q ss_pred -HHHHHcCCcE-EEEecCCCChhHHHHHHHHHhccCCcE
Q 020101 117 -LEAMEAELDL-VVCITEGIPQHDMVRVKAALNNQSKTR 153 (331)
Q Consensus 117 -~~~~~~Gi~~-ivi~t~G~~e~~~~~l~~~a~~~~gi~ 153 (331)
+.....+-.. +|+.+.|-- -+...|.++. ++..+.
T Consensus 213 ~~~l~~mk~ga~lIN~aRG~~-vde~aL~~aL-~~g~i~ 249 (525)
T TIGR01327 213 AEELAKMKKGVIIVNCARGGI-IDEAALYEAL-EEGHVR 249 (525)
T ss_pred HHHHhcCCCCeEEEEcCCCce-eCHHHHHHHH-HcCCee
Confidence 2222233333 344444421 2333444544 454444
No 164
>CHL00194 ycf39 Ycf39; Provisional
Probab=95.78 E-value=0.027 Score=53.73 Aligned_cols=87 Identities=18% Similarity=0.135 Sum_probs=57.9
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC-CCCCCc-eecCcccc-------cCHHHhhhcCCCCEEEEecChh----
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGT-EHLGLPVF-------NTVAEAKAETKANASAIYVPPP---- 110 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn-P~~~g~-~i~G~p~y-------~sl~dl~~~~~iDlaii~vp~~---- 110 (331)
+|+|.|+||..|+.+++.|.+.|+++.+.+. +..... ...|+.++ .++.++.+ ++|+++-+++..
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~--g~d~Vi~~~~~~~~~~ 79 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFK--GVTAIIDASTSRPSDL 79 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHC--CCCEEEECCCCCCCCc
Confidence 6889999999999999999999999875553 221100 11233322 23455555 789988765421
Q ss_pred ---------hHHHHHHHHHHcCCcEEEEecC
Q 020101 111 ---------FAAAAILEAMEAELDLVVCITE 132 (331)
Q Consensus 111 ---------~~~~~v~~~~~~Gi~~ivi~t~ 132 (331)
....+++.|.+.|++.++.+++
T Consensus 80 ~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss 110 (317)
T CHL00194 80 YNAKQIDWDGKLALIEAAKAAKIKRFIFFSI 110 (317)
T ss_pred cchhhhhHHHHHHHHHHHHHcCCCEEEEecc
Confidence 2356778888899998776655
No 165
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.76 E-value=0.068 Score=53.49 Aligned_cols=100 Identities=14% Similarity=0.148 Sum_probs=61.9
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce--ecCccccc-CHHHhhh-------------cCCCCEEEE
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFN-TVAEAKA-------------ETKANASAI 105 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~--i~G~p~y~-sl~dl~~-------------~~~iDlaii 105 (331)
.+|+|||. |.+|......|.+.|++++ ++|++... +. ....|.+. .++++.. ..+.|++++
T Consensus 4 ~kI~VIGl-G~~G~~~A~~La~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii 81 (415)
T PRK11064 4 ETISVIGL-GYIGLPTAAAFASRQKQVI-GVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLI 81 (415)
T ss_pred cEEEEECc-chhhHHHHHHHHhCCCEEE-EEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEE
Confidence 56899999 9999999999999999977 66654410 11 12344443 4554421 015899999
Q ss_pred ecCh----------hhHHHHHHHHHHc-CCcEEEEecCCCChhHHHHHHH
Q 020101 106 YVPP----------PFAAAAILEAMEA-ELDLVVCITEGIPQHDMVRVKA 144 (331)
Q Consensus 106 ~vp~----------~~~~~~v~~~~~~-Gi~~ivi~t~G~~e~~~~~l~~ 144 (331)
++|. ..+..+++..... .-..+|+..+..+....+++.+
T Consensus 82 ~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~ 131 (415)
T PRK11064 82 AVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAE 131 (415)
T ss_pred EcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHH
Confidence 9998 4666666665553 2234555555554444444443
No 166
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=95.70 E-value=0.019 Score=55.62 Aligned_cols=70 Identities=23% Similarity=0.333 Sum_probs=54.2
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce---ecCcccccCHHHhhhcCCCCEEEEecCh-hhHHHHH
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNTVAEAKAETKANASAIYVPP-PFAAAAI 116 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~---i~G~p~y~sl~dl~~~~~iDlaii~vp~-~~~~~~v 116 (331)
..+|.|||. |++|+.+.+.++.+|++++ +.||... ++ ..+..-..+++++.. ..|++++.+|- +....++
T Consensus 142 gkTvGIiG~-G~IG~~va~~l~afgm~v~-~~d~~~~-~~~~~~~~~~~~~~Ld~lL~--~sDiv~lh~PlT~eT~g~i 215 (324)
T COG0111 142 GKTVGIIGL-GRIGRAVAKRLKAFGMKVI-GYDPYSP-RERAGVDGVVGVDSLDELLA--EADILTLHLPLTPETRGLI 215 (324)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEE-EECCCCc-hhhhccccceecccHHHHHh--hCCEEEEcCCCCcchhccc
Confidence 556889999 9999999999999999988 8888321 22 344555678999998 78999999985 3344444
No 167
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.67 E-value=0.038 Score=50.01 Aligned_cols=91 Identities=16% Similarity=0.191 Sum_probs=66.0
Q ss_pred CCCeEEEEEcCCCCCCcHHHHHHHHcC--C--eEEEEeCCCCCCc---eecCcccccC----HHHhhhcCCCCEEEEecC
Q 020101 40 DKNTRVICQGITGKNGTFHTEQAIEYG--T--KMVGGVTPKKGGT---EHLGLPVFNT----VAEAKAETKANASAIYVP 108 (331)
Q Consensus 40 ~k~~~VaIvGasgk~G~~~~~~l~~~g--~--~iv~~VnP~~~g~---~i~G~p~y~s----l~dl~~~~~iDlaii~vp 108 (331)
++..||+|||- |++|.-++-.+++.| . ....++||..+|- .-.|++.-.. +-.+|+..++|++...|.
T Consensus 2 ~sk~kvaiigs-gni~tdlm~k~lr~g~~le~~~mvgidp~sdglaraarlgv~tt~egv~~ll~~p~~~di~lvfdats 80 (310)
T COG4569 2 SSKRKVAIIGS-GNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLARAARLGVATTHEGVIGLLNMPEFADIDLVFDATS 80 (310)
T ss_pred CCcceEEEEcc-CcccHHHHHHHHhcCCcccceeEEccCCCccHHHHHHhcCCcchhhHHHHHHhCCCCCCcceEEeccc
Confidence 45678999996 999988775555553 2 2333799987652 2456664432 444566667889999999
Q ss_pred hhhHHHHHHHHHHcCCcEEEEecC
Q 020101 109 PPFAAAAILEAMEAELDLVVCITE 132 (331)
Q Consensus 109 ~~~~~~~v~~~~~~Gi~~ivi~t~ 132 (331)
+-.+.+......+.||+. +-+|+
T Consensus 81 a~~h~~~a~~~ae~gi~~-idltp 103 (310)
T COG4569 81 AGAHVKNAAALAEAGIRL-IDLTP 103 (310)
T ss_pred cchhhcchHhHHhcCCce-eecch
Confidence 999999999999999998 44565
No 168
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=95.66 E-value=0.096 Score=48.05 Aligned_cols=34 Identities=32% Similarity=0.437 Sum_probs=29.0
Q ss_pred CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEe
Q 020101 40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGV 73 (331)
Q Consensus 40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~V 73 (331)
+++.+|+|+|+||.+|+.+++.|.+.|+++++.+
T Consensus 15 ~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~ 48 (251)
T PLN00141 15 VKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGV 48 (251)
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEe
Confidence 4567889999999999999999999999977543
No 169
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=95.62 E-value=0.056 Score=48.34 Aligned_cols=64 Identities=20% Similarity=0.296 Sum_probs=44.7
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEe-CCCCCCceecCc-----cccc--CHHHhhhcCCCCEEEEecCh
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKGGTEHLGL-----PVFN--TVAEAKAETKANASAIYVPP 109 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~V-nP~~~g~~i~G~-----p~y~--sl~dl~~~~~iDlaii~vp~ 109 (331)
+||+||||||+.|+.+++...+.|.++++.| ||... ....++ .+|. ++.+... ..|++|.+..+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~-~~~~~~~i~q~Difd~~~~a~~l~--g~DaVIsA~~~ 72 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKL-AARQGVTILQKDIFDLTSLASDLA--GHDAVISAFGA 72 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhc-cccccceeecccccChhhhHhhhc--CCceEEEeccC
Confidence 4789999999999999999999999988765 55542 111333 3443 2334444 68999977644
No 170
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.56 E-value=0.081 Score=49.96 Aligned_cols=89 Identities=21% Similarity=0.212 Sum_probs=58.6
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC-------CCceec---C-----cccccCHHHhhhcCCCCEEEEecC
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK-------GGTEHL---G-----LPVFNTVAEAKAETKANASAIYVP 108 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~-------~g~~i~---G-----~p~y~sl~dl~~~~~iDlaii~vp 108 (331)
+|+|+|+ |.+|......|.+.|.++. .+++.. .|-.+. + .+...+.++..+ ++|++++++|
T Consensus 2 kI~IiG~-G~iG~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~vilavk 77 (305)
T PRK12921 2 RIAVVGA-GAVGGTFGGRLLEAGRDVT-FLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTG--PFDLVILAVK 77 (305)
T ss_pred eEEEECC-CHHHHHHHHHHHHCCCceE-EEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccC--CCCEEEEEec
Confidence 6889999 9999999999988888765 444411 010110 1 112334555444 6899999999
Q ss_pred hhhHHHHHHHHHHc-CC-cEEEEecCCCCh
Q 020101 109 PPFAAAAILEAMEA-EL-DLVVCITEGIPQ 136 (331)
Q Consensus 109 ~~~~~~~v~~~~~~-Gi-~~ivi~t~G~~e 136 (331)
+..+.++++++... +- ..++.++.|+..
T Consensus 78 ~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~ 107 (305)
T PRK12921 78 AYQLDAAIPDLKPLVGEDTVIIPLQNGIGQ 107 (305)
T ss_pred ccCHHHHHHHHHhhcCCCCEEEEeeCCCCh
Confidence 99999988877653 22 344556779853
No 171
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.56 E-value=0.094 Score=52.45 Aligned_cols=65 Identities=15% Similarity=0.119 Sum_probs=50.7
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChh
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPP 110 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~ 110 (331)
+..+|.|+|. |++|+.+++.+..+|.+++ ..||... ....+...+.+++++.. ..|++++.+|-.
T Consensus 150 ~gktvGIiG~-G~IG~~vA~~~~~fGm~V~-~~d~~~~-~~~~~~~~~~~l~ell~--~sDiVslh~Plt 214 (409)
T PRK11790 150 RGKTLGIVGY-GHIGTQLSVLAESLGMRVY-FYDIEDK-LPLGNARQVGSLEELLA--QSDVVSLHVPET 214 (409)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEE-EECCCcc-cccCCceecCCHHHHHh--hCCEEEEcCCCC
Confidence 4566889999 9999999999999999987 7887641 12223433458999998 789999999953
No 172
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=95.46 E-value=0.063 Score=54.94 Aligned_cols=110 Identities=21% Similarity=0.241 Sum_probs=65.7
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce-e---------------------cC-cccccCHHHhhhcCC
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-H---------------------LG-LPVFNTVAEAKAETK 99 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~-i---------------------~G-~p~y~sl~dl~~~~~ 99 (331)
.+|+|||+ |.||...+..+.+.|++++ ..|+.....+ . .| +...++++++.+ +
T Consensus 5 ~kIavIG~-G~MG~~iA~~la~~G~~V~-v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~--~ 80 (495)
T PRK07531 5 MKAACIGG-GVIGGGWAARFLLAGIDVA-VFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVA--G 80 (495)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhc--C
Confidence 36889999 9999999999999999866 6666542110 0 12 445567877766 7
Q ss_pred CCEEEEecChhhH-HH-HHHHHHHc-CCc-EEEEecCCCChhHHHHHHHHHhccCCcEEEccCC
Q 020101 100 ANASAIYVPPPFA-AA-AILEAMEA-ELD-LVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNC 159 (331)
Q Consensus 100 iDlaii~vp~~~~-~~-~v~~~~~~-Gi~-~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc 159 (331)
.|+++.++|.+.. .. +..++.+. .-+ .++.-|+|++.++. .+.+.+...+-+.-|+.
T Consensus 81 aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l---~~~~~~~~r~~~~hP~n 141 (495)
T PRK07531 81 ADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDL---QEGMTHPERLFVAHPYN 141 (495)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHH---HhhcCCcceEEEEecCC
Confidence 9999999998862 22 33333221 112 23334457765443 33331222344556653
No 173
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=95.35 E-value=0.2 Score=47.94 Aligned_cols=185 Identities=18% Similarity=0.201 Sum_probs=111.3
Q ss_pred CCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEE-EEeCCCCCCce--ecCcccccCHHHhhhcCCCCEEEEecChhhHHHH
Q 020101 39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMV-GGVTPKKGGTE--HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA 115 (331)
Q Consensus 39 ~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv-~~VnP~~~g~~--i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~ 115 (331)
.|...+|.-||. |.||.....+|.+.||+++ +-+++..- ++ ..|..++.+..|+.+ ..|+++.++|.......
T Consensus 32 ~~s~~~iGFIGL-G~MG~~M~~nLik~G~kVtV~dr~~~k~-~~f~~~Ga~v~~sPaeVae--~sDvvitmv~~~~~v~~ 107 (327)
T KOG0409|consen 32 TPSKTRIGFIGL-GNMGSAMVSNLIKAGYKVTVYDRTKDKC-KEFQEAGARVANSPAEVAE--DSDVVITMVPNPKDVKD 107 (327)
T ss_pred CcccceeeEEee-ccchHHHHHHHHHcCCEEEEEeCcHHHH-HHHHHhchhhhCCHHHHHh--hcCEEEEEcCChHhhHH
Confidence 356778899999 9999999999999999954 34554321 12 368999999999998 89999999987655443
Q ss_pred -HHHHHHcCC-------cEEEEecCCCChhHHHHHHHHHhccCCcE-EEccCCCCcccCCCcccccC-CCCC--------
Q 020101 116 -ILEAMEAEL-------DLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPNCPGVIKPGECKIGIM-PGYI-------- 177 (331)
Q Consensus 116 -v~~~~~~Gi-------~~ivi~t~G~~e~~~~~l~~~a~~~~gi~-viGPnc~Gi~~p~~~~~~~~-~~~~-------- 177 (331)
+.. +.|+ +...+-.+-..+.-..+|.+.+ +..+.+ +=.|=+-|.--...-.+.|+ .+..
T Consensus 108 v~~g--~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i-~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~ 184 (327)
T KOG0409|consen 108 VLLG--KSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAI-SNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASP 184 (327)
T ss_pred HhcC--CCcceeeccCCCceEEeccccCHHHHHHHHHHH-HhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHH
Confidence 222 2222 1111222233344456777776 455556 55787777665441122222 1110
Q ss_pred --CCCC-CEEEEecChHHHHH-HH-HHHH-hCCCCceEEEecCCCCCCCCCHHHHHHHhhc
Q 020101 178 --HKPG-RIGIVSRSGTLTYE-AV-FQTT-AVGLGQSTCVGIGGDPFNGTNFVDCVTKFIA 232 (331)
Q Consensus 178 --~~~G-~valisQSG~~~~~-~~-~~~~-~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~ 232 (331)
---| ++=+..++|+-... +. +++. -.=+|++-.+.+|-+. +++...+++-+..
T Consensus 185 ~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~--GLd~~~l~eiln~ 243 (327)
T KOG0409|consen 185 VFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRL--GLDAKKLLEILNT 243 (327)
T ss_pred HHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHhc
Confidence 0124 57777777765433 11 1111 1234556666666665 7777777777665
No 174
>PLN02928 oxidoreductase family protein
Probab=95.31 E-value=0.08 Score=51.77 Aligned_cols=64 Identities=13% Similarity=0.088 Sum_probs=48.7
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceec---------------CcccccCHHHhhhcCCCCEEEE
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHL---------------GLPVFNTVAEAKAETKANASAI 105 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~---------------G~p~y~sl~dl~~~~~iDlaii 105 (331)
+..+|.|+|. |++|+.+++.+..+|.+++ .+||........ +. -+.+++++.. +.|++++
T Consensus 158 ~gktvGIiG~-G~IG~~vA~~l~afG~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~--~aDiVvl 232 (347)
T PLN02928 158 FGKTVFILGY-GAIGIELAKRLRPFGVKLL-ATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAG--EADIVVL 232 (347)
T ss_pred CCCEEEEECC-CHHHHHHHHHHhhCCCEEE-EECCCCChhhhhhhccccccccccccccC-cccCHHHHHh--hCCEEEE
Confidence 4567899999 9999999999999999987 778753111110 11 3568999987 7899999
Q ss_pred ecCh
Q 020101 106 YVPP 109 (331)
Q Consensus 106 ~vp~ 109 (331)
++|-
T Consensus 233 ~lPl 236 (347)
T PLN02928 233 CCTL 236 (347)
T ss_pred CCCC
Confidence 9984
No 175
>PLN00016 RNA-binding protein; Provisional
Probab=95.31 E-value=0.085 Score=51.65 Aligned_cols=92 Identities=11% Similarity=0.022 Sum_probs=60.4
Q ss_pred CCeEEEEE----cCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce-------------ecCcccc-cCHHH---hhhcCC
Q 020101 41 KNTRVICQ----GITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-------------HLGLPVF-NTVAE---AKAETK 99 (331)
Q Consensus 41 k~~~VaIv----Gasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~-------------i~G~p~y-~sl~d---l~~~~~ 99 (331)
.+.+|+|+ |++|.+|+.+++.|.+.|+++++.+........ ..|+..+ .++.+ +....+
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~~~~~ 130 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKVAGAG 130 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhhhccCC
Confidence 34679999 999999999999999999998754332210000 1133322 35544 332236
Q ss_pred CCEEEEecC--hhhHHHHHHHHHHcCCcEEEEecC
Q 020101 100 ANASAIYVP--PPFAAAAILEAMEAELDLVVCITE 132 (331)
Q Consensus 100 iDlaii~vp--~~~~~~~v~~~~~~Gi~~ivi~t~ 132 (331)
+|+++.+.. .+.+..+++.|.+.|++.+|.+++
T Consensus 131 ~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS 165 (378)
T PLN00016 131 FDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSS 165 (378)
T ss_pred ccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 899887753 234667788888899988776554
No 176
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.30 E-value=0.07 Score=48.04 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=66.7
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-c---eecCcccccCHHHhhhcCCCCEEEEecChh-hHHHH
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPP-FAAAA 115 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~-~~~~~ 115 (331)
+..+|+|+|. |++|+.+.+.|.+.|.+++ ..|.+... . +..|....++ +++... ++|+++-+.... ...+.
T Consensus 27 ~gk~v~I~G~-G~vG~~~A~~L~~~G~~Vv-v~D~~~~~~~~~~~~~g~~~v~~-~~l~~~-~~Dv~vp~A~~~~I~~~~ 102 (200)
T cd01075 27 EGKTVAVQGL-GKVGYKLAEHLLEEGAKLI-VADINEEAVARAAELFGATVVAP-EEIYSV-DADVFAPCALGGVINDDT 102 (200)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEcCCHHHHHHHHHHcCCEEEcc-hhhccc-cCCEEEecccccccCHHH
Confidence 4567899999 8999999999999999988 76765410 1 1124444433 455432 689988554432 22223
Q ss_pred HHHHHHcCCcEEEEecCC-CChhHHHHHHHHHhccCCcEEE---ccCCCCcccC
Q 020101 116 ILEAMEAELDLVVCITEG-IPQHDMVRVKAALNNQSKTRLV---GPNCPGVIKP 165 (331)
Q Consensus 116 v~~~~~~Gi~~ivi~t~G-~~e~~~~~l~~~a~~~~gi~vi---GPnc~Gi~~p 165 (331)
+.+.+.+.++-.+.+ +++.+.. +.. ++.|+.++ +-|+-|++..
T Consensus 103 ---~~~l~~~~v~~~AN~~~~~~~~~---~~L-~~~Gi~~~Pd~~~NaGGv~~~ 149 (200)
T cd01075 103 ---IPQLKAKAIAGAANNQLADPRHG---QML-HERGILYAPDYVVNAGGLINV 149 (200)
T ss_pred ---HHHcCCCEEEECCcCccCCHhHH---HHH-HHCCCEEeCceeeeCcCceee
Confidence 334467775543333 2212222 223 67888875 2355666653
No 177
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.28 E-value=0.054 Score=51.77 Aligned_cols=75 Identities=17% Similarity=0.115 Sum_probs=51.3
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce-------------ecC-------------cccccCHHHhh
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE-------------HLG-------------LPVFNTVAEAK 95 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~-------------i~G-------------~p~y~sl~dl~ 95 (331)
.+|+|||+ |.||..+...+.+.|++++ .+|+.... +. -.| +....++++..
T Consensus 3 ~~V~VIG~-G~mG~~iA~~la~~G~~V~-v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~ 80 (308)
T PRK06129 3 GSVAIIGA-GLIGRAWAIVFARAGHEVR-LWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAV 80 (308)
T ss_pred cEEEEECc-cHHHHHHHHHHHHCCCeeE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhh
Confidence 36889998 9999999999999999876 67765410 00 012 23456787776
Q ss_pred hcCCCCEEEEecChhh--HHHHHHHHHH
Q 020101 96 AETKANASAIYVPPPF--AAAAILEAME 121 (331)
Q Consensus 96 ~~~~iDlaii~vp~~~--~~~~v~~~~~ 121 (331)
+ +.|+++.++|.+. -..++.++.+
T Consensus 81 ~--~ad~Vi~avpe~~~~k~~~~~~l~~ 106 (308)
T PRK06129 81 A--DADYVQESAPENLELKRALFAELDA 106 (308)
T ss_pred C--CCCEEEECCcCCHHHHHHHHHHHHH
Confidence 6 7999999999763 3444444433
No 178
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=95.25 E-value=0.091 Score=52.01 Aligned_cols=93 Identities=16% Similarity=0.188 Sum_probs=59.1
Q ss_pred CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC-CC-----c----eecCcccc-------cCHHHhhhcC--CC
Q 020101 40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK-GG-----T----EHLGLPVF-------NTVAEAKAET--KA 100 (331)
Q Consensus 40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~-~g-----~----~i~G~p~y-------~sl~dl~~~~--~i 100 (331)
++..+|+|+|++|.+|+.+++.|.+.|+++++.+.+.. .. . ...++..+ .+++++.+.. ++
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~~ 137 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDPV 137 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCCC
Confidence 34568999999999999999999999999875543221 00 0 00122211 2344444422 48
Q ss_pred CEEEEecCh-------------hhHHHHHHHHHHcCCcEEEEecC
Q 020101 101 NASAIYVPP-------------PFAAAAILEAMEAELDLVVCITE 132 (331)
Q Consensus 101 Dlaii~vp~-------------~~~~~~v~~~~~~Gi~~ivi~t~ 132 (331)
|+++.+..+ .....+++.|.+.|++.+|.+++
T Consensus 138 D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS 182 (390)
T PLN02657 138 DVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLLSA 182 (390)
T ss_pred cEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEEee
Confidence 999876532 12456778888899998776665
No 179
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.23 E-value=0.087 Score=49.79 Aligned_cols=75 Identities=17% Similarity=0.077 Sum_probs=51.4
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce---------------------------ecCcccccCHHHh
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---------------------------HLGLPVFNTVAEA 94 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~---------------------------i~G~p~y~sl~dl 94 (331)
.+|+|+|+ |.||..++..+.+.|++++ .+|+.... +. ...+....++++.
T Consensus 4 ~kIaViGa-G~mG~~iA~~la~~G~~V~-l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a 81 (287)
T PRK08293 4 KNVTVAGA-GVLGSQIAFQTAFHGFDVT-IYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA 81 (287)
T ss_pred cEEEEECC-CHHHHHHHHHHHhcCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence 46889999 9999999999988898865 65554310 00 0122345677776
Q ss_pred hhcCCCCEEEEecChh--hHHHHHHHHHH
Q 020101 95 KAETKANASAIYVPPP--FAAAAILEAME 121 (331)
Q Consensus 95 ~~~~~iDlaii~vp~~--~~~~~v~~~~~ 121 (331)
.+ +.|++|.++|.+ ...++++++.+
T Consensus 82 ~~--~aDlVieavpe~~~~k~~~~~~l~~ 108 (287)
T PRK08293 82 VK--DADLVIEAVPEDPEIKGDFYEELAK 108 (287)
T ss_pred hc--CCCEEEEeccCCHHHHHHHHHHHHh
Confidence 65 789999999955 45566666544
No 180
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=95.20 E-value=0.047 Score=52.98 Aligned_cols=118 Identities=11% Similarity=0.130 Sum_probs=77.9
Q ss_pred CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHH
Q 020101 40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE 118 (331)
Q Consensus 40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~ 118 (331)
....+|+|||. |+||+...+.+.+.|..+++---+.+.. .+-.|..-|..+.|+.++ .+|+++.||.......++..
T Consensus 50 k~tl~IaIIGf-GnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcer-hpDvvLlctsilsiekilat 127 (480)
T KOG2380|consen 50 KATLVIAIIGF-GNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCER-HPDVVLLCTSILSIEKILAT 127 (480)
T ss_pred ccceEEEEEec-CcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhc-CCCEEEEEehhhhHHHHHHh
Confidence 35677899999 9999999999999999877332333310 124688889999998876 69999999999988888776
Q ss_pred HHH--cCCcEEEEecCCCChhHHHHHHHHHhccCCcE----EEccCC
Q 020101 119 AME--AELDLVVCITEGIPQHDMVRVKAALNNQSKTR----LVGPNC 159 (331)
Q Consensus 119 ~~~--~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~----viGPnc 159 (331)
..= ..+..+++-..-..+-+.+.+.++.-++-+|. +-||.+
T Consensus 128 ypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPks 174 (480)
T KOG2380|consen 128 YPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKS 174 (480)
T ss_pred cCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCc
Confidence 432 33445454333333333334444432344432 457763
No 181
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=95.12 E-value=0.7 Score=45.57 Aligned_cols=122 Identities=18% Similarity=0.285 Sum_probs=92.0
Q ss_pred CCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCc-HHHHHHHHH
Q 020101 180 PGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTA-EEDAAALIK 258 (331)
Q Consensus 180 ~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~-~~~~~~f~~ 258 (331)
.|+|+.+.-.++++++.++.....|--...|.-+|+-+. .=.+.+.++.+..||++|+|.+-+=++-.. ..-++-..+
T Consensus 255 dG~IG~ivNGAGLaMaTmDii~~~Gg~PANFLDvGGgA~-~e~v~~a~~~il~d~~vk~IfVNIfGGI~rcD~vA~GIi~ 333 (387)
T COG0045 255 DGNIGCIVNGAGLAMATMDIVKLYGGKPANFLDVGGGAT-AERVKEAFKLILSDPNVKAIFVNIFGGITRCDEVAEGIIA 333 (387)
T ss_pred cCcEEEEecChhHHHHHHHHHHHcCCCCcceeecCCCCC-HHHHHHHHHHHhcCCCccEEEEEEccCcCccHHHHHHHHH
Confidence 499999999999999999999988999999999998763 444888899999999999998876542111 112233334
Q ss_pred HhC---CCCCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcC--CeEeCCHhHHHHHHHH
Q 020101 259 ESG---TEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAG--VTVVESPAKIGAAMLE 322 (331)
Q Consensus 259 a~r---~~KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aG--v~~v~~~~el~~~~~a 322 (331)
+++ .++|+|+=..|... +.=...++++| +..+++++|....+.+
T Consensus 334 Al~e~~~~vPlVVRL~GtN~--------------------e~Gk~iL~esg~~i~~~~~l~~aa~k~v~ 382 (387)
T COG0045 334 ALKEVGVNVPLVVRLEGTNV--------------------EEGKRILAESGLNIIAADDLDEAAEKAVE 382 (387)
T ss_pred HHHhcCCCCCEEEEcCCCCH--------------------HHHHHHHHHcCCceEecccHHHHHHHHHH
Confidence 554 67999997777544 34468889999 7888888877665544
No 182
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.06 E-value=0.068 Score=51.09 Aligned_cols=107 Identities=16% Similarity=0.219 Sum_probs=62.9
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc---eecCccc--ccCHHHhhhcCCCCEEEEecChhhHHHHH
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPV--FNTVAEAKAETKANASAIYVPPPFAAAAI 116 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~---~i~G~p~--y~sl~dl~~~~~iDlaii~vp~~~~~~~v 116 (331)
..+|.|+|+ |.+|+.+++.+...|.++. .+|++.... +..|... +.++.+... +.|++|.++|+....+-.
T Consensus 152 g~kvlViG~-G~iG~~~a~~L~~~Ga~V~-v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~--~aDiVI~t~p~~~i~~~~ 227 (296)
T PRK08306 152 GSNVLVLGF-GRTGMTLARTLKALGANVT-VGARKSAHLARITEMGLSPFHLSELAEEVG--KIDIIFNTIPALVLTKEV 227 (296)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHcCCeeecHHHHHHHhC--CCCEEEECCChhhhhHHH
Confidence 467899999 9999999999999998765 666653101 1234432 234555555 789999999975443322
Q ss_pred HHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccC
Q 020101 117 LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN 158 (331)
Q Consensus 117 ~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPn 158 (331)
-+....|- .++.++..-...+ + +.+ +++|+++++++
T Consensus 228 l~~~~~g~-vIIDla~~pggtd---~-~~a-~~~Gv~~~~~~ 263 (296)
T PRK08306 228 LSKMPPEA-LIIDLASKPGGTD---F-EYA-EKRGIKALLAP 263 (296)
T ss_pred HHcCCCCc-EEEEEccCCCCcC---e-eeh-hhCCeEEEEEC
Confidence 22233332 2232333111112 2 234 68899988733
No 183
>PRK06487 glycerate dehydrogenase; Provisional
Probab=94.98 E-value=0.13 Score=49.65 Aligned_cols=61 Identities=13% Similarity=0.052 Sum_probs=48.2
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecCh
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP 109 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~ 109 (331)
...+|.|+|. |++|+.+++.+..+|.+++ .+||.. .. ... -+.+++++.. ..|++++.+|-
T Consensus 147 ~gktvgIiG~-G~IG~~vA~~l~~fgm~V~-~~~~~~--~~-~~~-~~~~l~ell~--~sDiv~l~lPl 207 (317)
T PRK06487 147 EGKTLGLLGH-GELGGAVARLAEAFGMRVL-IGQLPG--RP-ARP-DRLPLDELLP--QVDALTLHCPL 207 (317)
T ss_pred CCCEEEEECC-CHHHHHHHHHHhhCCCEEE-EECCCC--Cc-ccc-cccCHHHHHH--hCCEEEECCCC
Confidence 4567899999 9999999999999999987 677653 21 111 2458999988 78999999995
No 184
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=94.97 E-value=0.036 Score=52.42 Aligned_cols=83 Identities=18% Similarity=0.188 Sum_probs=54.1
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEec----------Ch---
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYV----------PP--- 109 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~v----------p~--- 109 (331)
+||.|+|+||-+|+.+.+.+.+.|++++ ..+... ..+.-...++++.++.+||++|.+. .+
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~-~~~r~~-----~dl~d~~~~~~~~~~~~pd~Vin~aa~~~~~~ce~~p~~a 74 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVI-ATSRSD-----LDLTDPEAVAKLLEAFKPDVVINCAAYTNVDACEKNPEEA 74 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEE-EESTTC-----S-TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEE-EeCchh-----cCCCCHHHHHHHHHHhCCCeEeccceeecHHhhhhChhhh
Confidence 5789999999999999999999888877 445432 1222334566666655799999885 22
Q ss_pred -----hhHHHHHHHHHHcCCcEEEEecC
Q 020101 110 -----PFAAAAILEAMEAELDLVVCITE 132 (331)
Q Consensus 110 -----~~~~~~v~~~~~~Gi~~ivi~t~ 132 (331)
.....+++.|.+.|++.+. +++
T Consensus 75 ~~iN~~~~~~la~~~~~~~~~li~-~ST 101 (286)
T PF04321_consen 75 YAINVDATKNLAEACKERGARLIH-IST 101 (286)
T ss_dssp HHHHTHHHHHHHHHHHHCT-EEEE-EEE
T ss_pred HHHhhHHHHHHHHHHHHcCCcEEE-eec
Confidence 2233467788889998866 454
No 185
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.87 E-value=0.054 Score=51.23 Aligned_cols=91 Identities=11% Similarity=0.039 Sum_probs=55.1
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce--e------------cC-------------cccccCHHHh
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--H------------LG-------------LPVFNTVAEA 94 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~--i------------~G-------------~p~y~sl~dl 94 (331)
..+|+|||+ |.||..+...+...|++++ .+|++...-+ . .| +....+++++
T Consensus 4 ~~kI~vIGa-G~mG~~iA~~la~~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 81 (292)
T PRK07530 4 IKKVGVIGA-GQMGNGIAHVCALAGYDVL-LNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDL 81 (292)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHh
Confidence 456889999 9999999999999999866 5555431000 0 12 2233456553
Q ss_pred hhcCCCCEEEEecChhhH--HHHHHHHHHc-CCcEEEE-ecCCCChh
Q 020101 95 KAETKANASAIYVPPPFA--AAAILEAMEA-ELDLVVC-ITEGIPQH 137 (331)
Q Consensus 95 ~~~~~iDlaii~vp~~~~--~~~v~~~~~~-Gi~~ivi-~t~G~~e~ 137 (331)
+ +.|+++.++|.+.. ..++.++.+. .-..+++ -|++++..
T Consensus 82 -~--~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s 125 (292)
T PRK07530 82 -A--DCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISIT 125 (292)
T ss_pred -c--CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH
Confidence 3 68999999987532 3444444332 1223343 45677644
No 186
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=94.86 E-value=0.095 Score=52.77 Aligned_cols=85 Identities=14% Similarity=0.112 Sum_probs=59.3
Q ss_pred eEEEEEcCCCCCCcHHHHHHHH---cCCeEEEEeCCCCCCceecCcccccCHHHh---hhcCCCCEEEEecChhhHH---
Q 020101 43 TRVICQGITGKNGTFHTEQAIE---YGTKMVGGVTPKKGGTEHLGLPVFNTVAEA---KAETKANASAIYVPPPFAA--- 113 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~---~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl---~~~~~iDlaii~vp~~~~~--- 113 (331)
.+++|+|+ |..|..+.+.+.+ .|+++++.++...+...+.|+|++.+++++ .+++++|-++++.|.....
T Consensus 125 rrvLIIGa-g~~~~~L~~l~~~~~~~g~~vVGfi~~dd~~~~i~gvpVlG~~~dl~~~v~~~~Id~ViIAlp~~~~~~~~ 203 (442)
T TIGR03013 125 RRILVLGT-GPRAREIARLRRSSDRRGHEIVGFVPLPDEPAYVPSEHVIENGDGLVEYVLRHRIDEIVIALDERRGSLPV 203 (442)
T ss_pred CcEEEEEC-CHHHHHHHHHHHhCccCCeEEEEEEcCCccccccCCCcccCCHHHHHHHHHhCCCCEEEEECchhhcchHH
Confidence 45889999 7777766444433 379999888432211357889999876665 4457899999999865432
Q ss_pred HHHHHHHHcCCcEEE
Q 020101 114 AAILEAMEAELDLVV 128 (331)
Q Consensus 114 ~~v~~~~~~Gi~~iv 128 (331)
+.++.|.+.|++..+
T Consensus 204 ~~l~~~~~~gv~V~i 218 (442)
T TIGR03013 204 DELLECKLSGIEVVD 218 (442)
T ss_pred HHHHHHHhCCCEEEE
Confidence 357788888988644
No 187
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=94.82 E-value=0.067 Score=45.64 Aligned_cols=85 Identities=24% Similarity=0.282 Sum_probs=51.4
Q ss_pred eEEEEEcCCCCCCcHHHHHHHH---cCCeEEEEeCCCCC--CceecCcccccCHHHhhh---cCCCCEEEEecChh---h
Q 020101 43 TRVICQGITGKNGTFHTEQAIE---YGTKMVGGVTPKKG--GTEHLGLPVFNTVAEAKA---ETKANASAIYVPPP---F 111 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~---~g~~iv~~VnP~~~--g~~i~G~p~y~sl~dl~~---~~~iDlaii~vp~~---~ 111 (331)
.+..++|. +..+..+.+.+.+ .|+++++.++++.. ++.+.|.|+..+++++++ ++++|-++++.|.+ .
T Consensus 78 ~~~~~v~~-~~~~~~~~~~l~~~~~~g~~vvg~~d~~~~~~~~~~~~~~~lg~~~~l~~~~~~~~id~v~ial~~~~~~~ 156 (175)
T PF13727_consen 78 RNVLIVGA-GGAGRELAEALRSNPRLGYRVVGFVDDDPSDRGPEIDGVPVLGDLDDLPELVREHDIDEVIIALPWSEEEQ 156 (175)
T ss_dssp EEEEEE---SHHHHHHHHHHHH--SSSEEEEEEE-S-GGGTT-EETTEEEE--GGGHHHHHHHHT--EEEE--TTS-HHH
T ss_pred cceEEEEE-echHHHHHHHHHhhhhcCceEEEEEeCchhhccCcccCceeEcCHHHHHHHHHhCCCCEEEEEcCccCHHH
Confidence 33356775 5556667777765 48999988876652 345689999987666654 46899999998764 4
Q ss_pred HHHHHHHHHHcCCcEEE
Q 020101 112 AAAAILEAMEAELDLVV 128 (331)
Q Consensus 112 ~~~~v~~~~~~Gi~~iv 128 (331)
..+++++|-+.|++.-+
T Consensus 157 i~~ii~~~~~~~v~v~~ 173 (175)
T PF13727_consen 157 IKRIIEELENHGVRVRV 173 (175)
T ss_dssp HHHHHHHHHTTT-EEEE
T ss_pred HHHHHHHHHhCCCEEEE
Confidence 56788889899987643
No 188
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.79 E-value=0.097 Score=49.54 Aligned_cols=90 Identities=16% Similarity=0.103 Sum_probs=54.4
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceec-----------Cc---------------------ccccC
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHL-----------GL---------------------PVFNT 90 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~-----------G~---------------------p~y~s 90 (331)
.+|+|||+ |.||..+...+...|++++ .+|++. +.+. ++ ....+
T Consensus 4 ~~I~ViGa-G~mG~~iA~~la~~G~~V~-l~d~~~--~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 79 (291)
T PRK06035 4 KVIGVVGS-GVMGQGIAQVFARTGYDVT-IVDVSE--EILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTS 79 (291)
T ss_pred cEEEEECc-cHHHHHHHHHHHhcCCeEE-EEeCCH--HHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCC
Confidence 46889999 9999999999999999866 666543 1110 11 12223
Q ss_pred HHHhhhcCCCCEEEEecChhh--HHHHHHHHHHc-CCcEEEE-ecCCCChhHH
Q 020101 91 VAEAKAETKANASAIYVPPPF--AAAAILEAMEA-ELDLVVC-ITEGIPQHDM 139 (331)
Q Consensus 91 l~dl~~~~~iDlaii~vp~~~--~~~~v~~~~~~-Gi~~ivi-~t~G~~e~~~ 139 (331)
++. .+ +.|+++.++|.+. -.++++++.+. .-+.+++ -++|++.++.
T Consensus 80 ~~~-~~--~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~l 129 (291)
T PRK06035 80 YES-LS--DADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEI 129 (291)
T ss_pred HHH-hC--CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHH
Confidence 433 33 6899999999876 35555554432 2223332 3446654443
No 189
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=94.78 E-value=0.3 Score=47.39 Aligned_cols=107 Identities=15% Similarity=0.163 Sum_probs=65.2
Q ss_pred CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCC-C-ceecCcccccCHHHhhhcCCCCEEEEecChhhH-HHHH
Q 020101 40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG-G-TEHLGLPVFNTVAEAKAETKANASAIYVPPPFA-AAAI 116 (331)
Q Consensus 40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~-g-~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~-~~~v 116 (331)
.+..++.|+|. |++|+.+++.++.+|.+++ .-||... . ++..+. .|-+++++.+ +.|++++.+|...- ..++
T Consensus 144 l~gktvGIiG~-GrIG~avA~r~~~Fgm~v~-y~~~~~~~~~~~~~~~-~y~~l~ell~--~sDii~l~~Plt~~T~hLi 218 (324)
T COG1052 144 LRGKTLGIIGL-GRIGQAVARRLKGFGMKVL-YYDRSPNPEAEKELGA-RYVDLDELLA--ESDIISLHCPLTPETRHLI 218 (324)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHhcCCCEEE-EECCCCChHHHhhcCc-eeccHHHHHH--hCCEEEEeCCCChHHhhhc
Confidence 45677899999 9999999999998888877 5555431 0 122334 4555999998 79999999986433 3333
Q ss_pred --HHHHHcCCcEEEEecCCCC-hhHHHHHHHHHhccCCcE
Q 020101 117 --LEAMEAELDLVVCITEGIP-QHDMVRVKAALNNQSKTR 153 (331)
Q Consensus 117 --~~~~~~Gi~~ivi~t~G~~-e~~~~~l~~~a~~~~gi~ 153 (331)
+.....+-.+++ +.++-. --+...|.++. ++..+.
T Consensus 219 n~~~l~~mk~ga~l-VNtaRG~~VDe~ALi~AL-~~g~i~ 256 (324)
T COG1052 219 NAEELAKMKPGAIL-VNTARGGLVDEQALIDAL-KSGKIA 256 (324)
T ss_pred CHHHHHhCCCCeEE-EECCCccccCHHHHHHHH-HhCCcc
Confidence 334444444433 344321 12333445544 444433
No 190
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=94.74 E-value=0.16 Score=49.04 Aligned_cols=36 Identities=19% Similarity=0.217 Sum_probs=30.4
Q ss_pred ccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEE
Q 020101 37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGG 72 (331)
Q Consensus 37 ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~ 72 (331)
-|..+..+|+|.|++|-+|+.+++.|.+.|+++++.
T Consensus 10 ~~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~ 45 (348)
T PRK15181 10 KLVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGL 45 (348)
T ss_pred cccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEE
Confidence 344566789999999999999999999999998744
No 191
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=94.72 E-value=0.11 Score=53.61 Aligned_cols=65 Identities=20% Similarity=0.336 Sum_probs=50.5
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc--eecCcccccCHHHhhhcCCCCEEEEecChh
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPP 110 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~--~i~G~p~y~sl~dl~~~~~iDlaii~vp~~ 110 (331)
...+|.|+|. |++|+.+.+.+..+|++++ .+||....+ ...|+... +++++.. ..|++++++|..
T Consensus 139 ~gktvgIiG~-G~IG~~vA~~l~~fG~~V~-~~d~~~~~~~~~~~g~~~~-~l~ell~--~aDiV~l~lP~t 205 (526)
T PRK13581 139 YGKTLGIIGL-GRIGSEVAKRAKAFGMKVI-AYDPYISPERAAQLGVELV-SLDELLA--RADFITLHTPLT 205 (526)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEE-EECCCCChhHHHhcCCEEE-cHHHHHh--hCCEEEEccCCC
Confidence 3466889999 9999999999999999987 788753111 13455544 8999987 789999999974
No 192
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.67 E-value=0.062 Score=46.58 Aligned_cols=37 Identities=22% Similarity=0.146 Sum_probs=31.6
Q ss_pred CCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101 39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 77 (331)
Q Consensus 39 ~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~ 77 (331)
.-+..+|+|||+ |+.|...++.|.+.|.+++ .|+|..
T Consensus 10 ~l~~~~vlVvGG-G~va~rka~~Ll~~ga~V~-VIsp~~ 46 (157)
T PRK06719 10 NLHNKVVVIIGG-GKIAYRKASGLKDTGAFVT-VVSPEI 46 (157)
T ss_pred EcCCCEEEEECC-CHHHHHHHHHHHhCCCEEE-EEcCcc
Confidence 456788999999 9999989999999999877 788875
No 193
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=94.60 E-value=0.2 Score=49.00 Aligned_cols=92 Identities=7% Similarity=0.007 Sum_probs=58.0
Q ss_pred cCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCcee---cCcccc-------cCHHHhhhcCCCCEEEEec
Q 020101 38 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH---LGLPVF-------NTVAEAKAETKANASAIYV 107 (331)
Q Consensus 38 l~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i---~G~p~y-------~sl~dl~~~~~iDlaii~v 107 (331)
+..+.++|+|.|++|-+|+.+++.|.+.|+++++...... .... .+...+ .++..+.. ++|+++-+.
T Consensus 17 ~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~D~Vih~A 93 (370)
T PLN02695 17 WPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKN-EHMSEDMFCHEFHLVDLRVMENCLKVTK--GVDHVFNLA 93 (370)
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccc-cccccccccceEEECCCCCHHHHHHHHh--CCCEEEEcc
Confidence 3456788999999999999999999999999884432211 0000 011111 12333344 689988765
Q ss_pred Ch-------------------hhHHHHHHHHHHcCCcEEEEecC
Q 020101 108 PP-------------------PFAAAAILEAMEAELDLVVCITE 132 (331)
Q Consensus 108 p~-------------------~~~~~~v~~~~~~Gi~~ivi~t~ 132 (331)
.. .....+++.|.+.+++.++.+++
T Consensus 94 a~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS 137 (370)
T PLN02695 94 ADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASS 137 (370)
T ss_pred cccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 21 02345677788889988776665
No 194
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=94.59 E-value=0.12 Score=50.37 Aligned_cols=88 Identities=14% Similarity=0.122 Sum_probs=64.4
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCC---------ce-----------------ecCc--ccc--cCH
Q 020101 43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG---------TE-----------------HLGL--PVF--NTV 91 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g---------~~-----------------i~G~--p~y--~sl 91 (331)
++|+|.|+ ||||+.+.+.+.+. +++++++.+|...- +. +.|. +++ +++
T Consensus 3 ikigInG~-GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~~~ 81 (334)
T PRK08955 3 IKVGINGF-GRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNKAI 81 (334)
T ss_pred eEEEEECc-CHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecCCh
Confidence 78999999 99999999987765 68888776653210 11 1122 222 146
Q ss_pred HHhhhcCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 020101 92 AEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE 132 (331)
Q Consensus 92 ~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~ 132 (331)
++++=. ++|+++.++......+.+...++.|.+.|++-++
T Consensus 82 ~~~~w~-gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap 121 (334)
T PRK08955 82 ADTDWS-GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAP 121 (334)
T ss_pred hhCCcc-CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCC
Confidence 666544 8999999999999999999999999998665333
No 195
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=94.59 E-value=0.095 Score=42.87 Aligned_cols=74 Identities=16% Similarity=0.107 Sum_probs=47.4
Q ss_pred EEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeC-CCCCCcee---cC-cc--cccCH--HHhhhcCCCCEEEEecChhhHH
Q 020101 44 RVICQGITGKNGTFHTEQAIEY-GTKMVGGVT-PKKGGTEH---LG-LP--VFNTV--AEAKAETKANASAIYVPPPFAA 113 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~-g~~iv~~Vn-P~~~g~~i---~G-~p--~y~sl--~dl~~~~~iDlaii~vp~~~~~ 113 (331)
+++|+|++|.+|+.+++.+.+. ++++++.+. +...++.. .+ +. .+..+ +++. ..+.|++++++|++.+.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DvV~~~~~~~~~~ 79 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFE-ELAVDIVFLALPHGVSK 79 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChh-hcCCCEEEEcCCcHHHH
Confidence 4788999899999999988885 888776533 32212221 11 11 11111 2222 12689999999999999
Q ss_pred HHHHH
Q 020101 114 AAILE 118 (331)
Q Consensus 114 ~~v~~ 118 (331)
+.+..
T Consensus 80 ~~~~~ 84 (122)
T smart00859 80 EIAPL 84 (122)
T ss_pred HHHHH
Confidence 97653
No 196
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=94.47 E-value=0.2 Score=45.80 Aligned_cols=111 Identities=14% Similarity=0.100 Sum_probs=65.5
Q ss_pred CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC------CC--------ceecCccccc-----CHHHhhhcCCC
Q 020101 40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK------GG--------TEHLGLPVFN-----TVAEAKAETKA 100 (331)
Q Consensus 40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~------~g--------~~i~G~p~y~-----sl~dl~~~~~i 100 (331)
.+..+|+|+|. |+.|+..++.|.+.|.++++..|.+. .- .+..++..|+ +-+++.. .++
T Consensus 21 l~g~~vaIqGf-GnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 98 (217)
T cd05211 21 LEGLTVAVQGL-GNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILG-LDV 98 (217)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCccccee-ccc
Confidence 35678999999 99999999999999999887765543 00 0112233332 1133333 378
Q ss_pred CEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCC
Q 020101 101 NASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNC 159 (331)
Q Consensus 101 Dlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc 159 (331)
|+++-|.+.... .-+.+.+.+++.|+-.+.+-...+..++ . +++|+.++ |..
T Consensus 99 DVlipaA~~~~i--~~~~a~~l~a~~V~e~AN~p~t~~a~~~---L-~~~Gi~v~-Pd~ 150 (217)
T cd05211 99 DIFAPCALGNVI--DLENAKKLKAKVVAEGANNPTTDEALRI---L-HERGIVVA-PDI 150 (217)
T ss_pred cEEeeccccCcc--ChhhHhhcCccEEEeCCCCCCCHHHHHH---H-HHCCcEEE-ChH
Confidence 999988876532 2344556678875533333212233322 2 46675554 653
No 197
>PRK06813 homoserine dehydrogenase; Validated
Probab=94.45 E-value=0.25 Score=48.34 Aligned_cols=109 Identities=16% Similarity=0.208 Sum_probs=64.7
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHH--------cCC--eEEEEeCCCCCCceecCccc---------------c-c-CHHHh
Q 020101 42 NTRVICQGITGKNGTFHTEQAIE--------YGT--KMVGGVTPKKGGTEHLGLPV---------------F-N-TVAEA 94 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~--------~g~--~iv~~VnP~~~g~~i~G~p~---------------y-~-sl~dl 94 (331)
.++|+|+|. |+.|+.+++.+.+ +|. ++++..|.+..-....|++. | . ..+++
T Consensus 2 ~i~I~liG~-G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (346)
T PRK06813 2 KIKVVLSGY-GTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEER 80 (346)
T ss_pred eeEEEEEec-ChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHHH
Confidence 478999999 9999988765432 343 46655554321000112211 1 1 11222
Q ss_pred hhc-CCCCEEEEecCh-----hhHHHHHHHHHHcCCcEEEEecCC--CChhHHHHHHHHHhccCCcEEE
Q 020101 95 KAE-TKANASAIYVPP-----PFAAAAILEAMEAELDLVVCITEG--IPQHDMVRVKAALNNQSKTRLV 155 (331)
Q Consensus 95 ~~~-~~iDlaii~vp~-----~~~~~~v~~~~~~Gi~~ivi~t~G--~~e~~~~~l~~~a~~~~gi~vi 155 (331)
... .++|++|.+||. +.+...+++++++|++. .|+. .--....+|.+.| +++|..+.
T Consensus 81 ~~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hV---VTANK~~la~~~~eL~~lA-~~~g~~~~ 145 (346)
T PRK06813 81 ATDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDI---VAISKGALVTNWREINEAA-KIANVRIR 145 (346)
T ss_pred hcCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeE---EcCCcHHHhccHHHHHHHH-HHcCCeEE
Confidence 211 258999999986 46778889999999986 2432 1112335677776 78887765
No 198
>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.42 E-value=0.1 Score=49.47 Aligned_cols=103 Identities=15% Similarity=0.241 Sum_probs=72.0
Q ss_pred EEEEEcCCCCCCcHHHHHHHHc--CCeEEEEeCCCCCCc----eecCcccccCHHHhhhcCCCCEEEEecChh----hHH
Q 020101 44 RVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGGT----EHLGLPVFNTVAEAKAETKANASAIYVPPP----FAA 113 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~--g~~iv~~VnP~~~g~----~i~G~p~y~sl~dl~~~~~iDlaii~vp~~----~~~ 113 (331)
+|+|+| .+.|+..+..+... +|++.+...-.-... .-.|+|.|.+.+++|+ .||++-+.+... .-.
T Consensus 6 sVvV~G--trFGq~Ylaaf~~~~~~~eLaGiLaqGSeRSRaLAh~~GVply~~~eelpd--~idiACVvVrsai~Gg~Gs 81 (361)
T COG4693 6 SVVVCG--TRFGQFYLAAFAAAPPRFELAGILAQGSERSRALAHRLGVPLYCEVEELPD--DIDIACVVVRSAIVGGQGS 81 (361)
T ss_pred eEEEec--chHHHHHHHHhccCCCCceeehhhhcccHHHHHHHHHhCCccccCHhhCCC--CCCeEEEEEeeeeecCCcH
Confidence 678888 57898877766653 788774443322101 1479999999999999 899998877543 446
Q ss_pred HHHHHHHHcCCcEEEEecCC-CChhHHHHHHHHHhccCCcEE
Q 020101 114 AAILEAMEAELDLVVCITEG-IPQHDMVRVKAALNNQSKTRL 154 (331)
Q Consensus 114 ~~v~~~~~~Gi~~ivi~t~G-~~e~~~~~l~~~a~~~~gi~v 154 (331)
+..+..+++||+. +++. .-.+|..++.+.| ++.|-+.
T Consensus 82 ~larall~RGi~V---lqEHPl~p~di~~l~rlA-~rqG~~y 119 (361)
T COG4693 82 ALARALLARGIHV---LQEHPLHPRDIQDLLRLA-ERQGRRY 119 (361)
T ss_pred HHHHHHHHcccHH---HHhCCCCHHHHHHHHHHH-HHhCcEE
Confidence 7888899999987 3443 4456777777776 6666553
No 199
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.41 E-value=0.25 Score=47.26 Aligned_cols=93 Identities=12% Similarity=0.108 Sum_probs=57.9
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCC------Ccee---cC------cccccCHHHhhhcCCCCEEEE
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG------GTEH---LG------LPVFNTVAEAKAETKANASAI 105 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~------g~~i---~G------~p~y~sl~dl~~~~~iDlaii 105 (331)
...+|+|+|+ |.+|......|.+.|.++. .+..... |-.+ .| .+++.+.++. . .+|++++
T Consensus 4 ~~m~I~IiG~-GaiG~~lA~~L~~~g~~V~-~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~--~~D~vil 78 (313)
T PRK06249 4 ETPRIGIIGT-GAIGGFYGAMLARAGFDVH-FLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAEDM-P--PCDWVLV 78 (313)
T ss_pred cCcEEEEECC-CHHHHHHHHHHHHCCCeEE-EEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchhhc-C--CCCEEEE
Confidence 3467999999 9999999999988888755 3222110 1011 12 1223333332 2 6899999
Q ss_pred ecChhhHHHHHHHHHHcC--CcEEEEecCCCChhH
Q 020101 106 YVPPPFAAAAILEAMEAE--LDLVVCITEGIPQHD 138 (331)
Q Consensus 106 ~vp~~~~~~~v~~~~~~G--i~~ivi~t~G~~e~~ 138 (331)
+|+.....++++.+...- -..++.++.|+..++
T Consensus 79 avK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e 113 (313)
T PRK06249 79 GLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVEE 113 (313)
T ss_pred EecCCChHhHHHHHhhhcCCCCEEEEecCCCCcHH
Confidence 999988887766654421 123566788986443
No 200
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=94.35 E-value=0.12 Score=50.50 Aligned_cols=88 Identities=16% Similarity=0.127 Sum_probs=61.8
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCc---------eecCc---------------------cccc
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT---------EHLGL---------------------PVFN 89 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~---------~i~G~---------------------p~y~ 89 (331)
+.+||+|+|+ |++|+.+++.+.+. +.++++..||...-+ ...|. +++.
T Consensus 4 ~~lrVaI~G~-GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~~ 82 (338)
T PLN02358 4 KKIRIGINGF-GRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 82 (338)
T ss_pred CceEEEEEee-cHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEEE
Confidence 4589999999 99999999987764 788887777643211 11111 1111
Q ss_pred --CHHHhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEE
Q 020101 90 --TVAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVC 129 (331)
Q Consensus 90 --sl~dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi 129 (331)
+.++++= +.++|+++.++......+.+...+++|.+.+++
T Consensus 83 ~~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~Vii 125 (338)
T PLN02358 83 IRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVI 125 (338)
T ss_pred cCCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEe
Confidence 1223331 137999999999999999999999999988664
No 201
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.35 E-value=0.15 Score=49.01 Aligned_cols=90 Identities=20% Similarity=0.228 Sum_probs=58.8
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce--ecCcc-----------------cccCHHHhhhcCCCCEE
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--HLGLP-----------------VFNTVAEAKAETKANAS 103 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~--i~G~p-----------------~y~sl~dl~~~~~iDla 103 (331)
.+|+|||+ |.+|......|.+.|+++. .++....-+. ..|+. +..+.++ .. +.|++
T Consensus 3 mkI~IiG~-G~mG~~~A~~L~~~G~~V~-~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~D~v 77 (341)
T PRK08229 3 ARICVLGA-GSIGCYLGGRLAAAGADVT-LIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAA-LA--TADLV 77 (341)
T ss_pred ceEEEECC-CHHHHHHHHHHHhcCCcEE-EEecHHHHHHHHhcCceeecCCCcceecccceeEeccChhh-cc--CCCEE
Confidence 46889999 9999999999999898866 5554321011 11221 1223432 23 68999
Q ss_pred EEecChhhHHHHHHHHHHc-CC-cEEEEecCCCChh
Q 020101 104 AIYVPPPFAAAAILEAMEA-EL-DLVVCITEGIPQH 137 (331)
Q Consensus 104 ii~vp~~~~~~~v~~~~~~-Gi-~~ivi~t~G~~e~ 137 (331)
+++++.....++++++... .- ..++.++.|+...
T Consensus 78 il~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~ 113 (341)
T PRK08229 78 LVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNA 113 (341)
T ss_pred EEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcH
Confidence 9999999988888776553 22 2344567788643
No 202
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=94.34 E-value=0.2 Score=49.69 Aligned_cols=103 Identities=15% Similarity=0.105 Sum_probs=56.7
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce-ec-----------------CcccccC--HHHhhhcCCCCE
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE-HL-----------------GLPVFNT--VAEAKAETKANA 102 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~-i~-----------------G~p~y~s--l~dl~~~~~iDl 102 (331)
+|+|||. |.||......+. .|++++ ++|.+... +. .. +.....+ .++... +.|+
T Consensus 2 kI~VIGl-GyvGl~~A~~lA-~G~~Vi-gvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~--~ad~ 76 (388)
T PRK15057 2 KITISGT-GYVGLSNGLLIA-QNHEVV-ALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYR--DADY 76 (388)
T ss_pred EEEEECC-CHHHHHHHHHHH-hCCcEE-EEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhc--CCCE
Confidence 6889999 999988886555 488877 66554310 00 11 1112122 445444 7899
Q ss_pred EEEecChh-----------hHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCc
Q 020101 103 SAIYVPPP-----------FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKT 152 (331)
Q Consensus 103 aii~vp~~-----------~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi 152 (331)
+++++|.. .+.++++...+..-..+++..+-++....+++.+.. .+.++
T Consensus 77 vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~-~~~~v 136 (388)
T PRK15057 77 VIIATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKY-RTENI 136 (388)
T ss_pred EEEeCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHh-hcCcE
Confidence 99999965 344455554443323344444444444444454444 34443
No 203
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=94.29 E-value=0.27 Score=50.02 Aligned_cols=105 Identities=16% Similarity=0.111 Sum_probs=67.4
Q ss_pred CCcHHHHHHHHcCCeEEEEeCCCCCCc-e-e------cCcccccCHHHhhhc-CCCCEEEEecChhhH-HHHHHHHHHcC
Q 020101 54 NGTFHTEQAIEYGTKMVGGVTPKKGGT-E-H------LGLPVFNTVAEAKAE-TKANASAIYVPPPFA-AAAILEAMEAE 123 (331)
Q Consensus 54 ~G~~~~~~l~~~g~~iv~~VnP~~~g~-~-i------~G~p~y~sl~dl~~~-~~iDlaii~vp~~~~-~~~v~~~~~~G 123 (331)
||+...++|.+.||+++ +.|.+.... + . .|+..+.|++|+.+. ..+|++++++|...+ .++++.++..-
T Consensus 1 MG~~mA~nL~~~G~~V~-v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~~l 79 (459)
T PRK09287 1 MGKNLALNIASHGYTVA-VYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLPLL 79 (459)
T ss_pred CcHHHHHHHHhCCCeEE-EECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHhcC
Confidence 78889999999999976 667654211 1 1 147788899998763 248999999998755 44555555432
Q ss_pred -CcEEEEecCC-CChhHHHHHHHHHhccCCcEEEccCCCC
Q 020101 124 -LDLVVCITEG-IPQHDMVRVKAALNNQSKTRLVGPNCPG 161 (331)
Q Consensus 124 -i~~ivi~t~G-~~e~~~~~l~~~a~~~~gi~viGPnc~G 161 (331)
...+|| -.| ...++..++.+.+ ++.|+++++-.-.|
T Consensus 80 ~~GdiiI-D~gn~~~~~t~~~~~~l-~~~Gi~fvdapVSG 117 (459)
T PRK09287 80 EKGDIII-DGGNSNYKDTIRREKEL-AEKGIHFIGMGVSG 117 (459)
T ss_pred CCCCEEE-ECCCCCHHHHHHHHHHH-HhcCCeEEecCCCC
Confidence 223333 333 2334444555555 68899988755544
No 204
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=94.25 E-value=0.11 Score=50.34 Aligned_cols=90 Identities=16% Similarity=0.135 Sum_probs=64.2
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHc--CCeEEEEeCCCC----------C-------Cc--------ee--cCcccccC--H
Q 020101 43 TRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKK----------G-------GT--------EH--LGLPVFNT--V 91 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~--g~~iv~~VnP~~----------~-------g~--------~i--~G~p~y~s--l 91 (331)
+||+|-|. |++|+.+++.+.+. ..++++..++.. + ++ .+ .+++++.+ .
T Consensus 2 ikV~INGf-GrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I~v~~~~~p 80 (335)
T COG0057 2 IKVAINGF-GRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAERDP 80 (335)
T ss_pred cEEEEecC-cHHHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceEEEEecCCh
Confidence 68999999 99999999988876 378885544211 0 00 01 24666664 3
Q ss_pred HHhhhc-CCCCEEEEecChhhHHHHHHHHHHc-CCcEEEEecCC
Q 020101 92 AEAKAE-TKANASAIYVPPPFAAAAILEAMEA-ELDLVVCITEG 133 (331)
Q Consensus 92 ~dl~~~-~~iDlaii~vp~~~~~~~v~~~~~~-Gi~~ivi~t~G 133 (331)
+++|-. ..+|+++.|||.-...+..+.-+++ |+|.+++-.++
T Consensus 81 ~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~ 124 (335)
T COG0057 81 ANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPG 124 (335)
T ss_pred HHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCC
Confidence 455542 4689999999999988888888888 59997765554
No 205
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=94.24 E-value=0.32 Score=47.09 Aligned_cols=65 Identities=11% Similarity=0.195 Sum_probs=49.2
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHH-HcCCeEEEEeCCCCCCc--eecCcccccCHHHhhhcCCCCEEEEecChh
Q 020101 41 KNTRVICQGITGKNGTFHTEQAI-EYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPP 110 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~-~~g~~iv~~VnP~~~g~--~i~G~p~y~sl~dl~~~~~iDlaii~vp~~ 110 (331)
...+|.|||. |++|+.+.+.+. .+|.+++ ..||....+ ...|.. |.+++++.+ ..|++++.+|-.
T Consensus 144 ~gktvGIiG~-G~IG~~va~~l~~~fgm~V~-~~~~~~~~~~~~~~~~~-~~~l~ell~--~sDvv~lh~plt 211 (323)
T PRK15409 144 HHKTLGIVGM-GRIGMALAQRAHFGFNMPIL-YNARRHHKEAEERFNAR-YCDLDTLLQ--ESDFVCIILPLT 211 (323)
T ss_pred CCCEEEEEcc-cHHHHHHHHHHHhcCCCEEE-EECCCCchhhHHhcCcE-ecCHHHHHH--hCCEEEEeCCCC
Confidence 4567889999 999999999997 7898877 566653111 123443 568999998 799999999953
No 206
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=94.22 E-value=0.26 Score=48.92 Aligned_cols=110 Identities=16% Similarity=0.102 Sum_probs=68.7
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHc--CCeEEEEe-CCCCCC-c-----------eec---------------Cccccc---
Q 020101 43 TRVICQGITGKNGTFHTEQAIEY--GTKMVGGV-TPKKGG-T-----------EHL---------------GLPVFN--- 89 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~--g~~iv~~V-nP~~~g-~-----------~i~---------------G~p~y~--- 89 (331)
.+|+|+|++|.+|+.+++.+.++ .|++++.. +.+... . -+. +..++.
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~ 81 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGEE 81 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEEChh
Confidence 46889999999999999888765 68887654 332210 0 011 111222
Q ss_pred CHHHhhhcCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCCh-hHHHHHHHHHhccCCcEEE
Q 020101 90 TVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQ-HDMVRVKAALNNQSKTRLV 155 (331)
Q Consensus 90 sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e-~~~~~l~~~a~~~~gi~vi 155 (331)
.+.++.+..++|+++.+++......-+.+|+++|.+.+. +..-+. .....+.+.+ +++|.+++
T Consensus 82 ~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaL--ANKEslV~aG~~i~~~a-~~~g~~i~ 145 (385)
T PRK05447 82 GLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIAL--ANKESLVCAGELVMDAA-KKSGAQIL 145 (385)
T ss_pred HHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEE--eCHHHHHhhHHHHHHHH-HHcCCeEE
Confidence 355555545699999999998888889999999977533 332111 1123445555 56665554
No 207
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=94.19 E-value=0.61 Score=45.66 Aligned_cols=124 Identities=19% Similarity=0.125 Sum_probs=80.1
Q ss_pred CCCeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCC--ce--ec----------------------Cc-ccccCH
Q 020101 40 DKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG--TE--HL----------------------GL-PVFNTV 91 (331)
Q Consensus 40 ~k~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g--~~--i~----------------------G~-p~y~sl 91 (331)
.+.+||.+||+ |.||+-++...... |+++++.-|.+..+ +. .. |. -+-.+.
T Consensus 15 G~PiRVGlIGA-G~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~ 93 (438)
T COG4091 15 GKPIRVGLIGA-GEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDA 93 (438)
T ss_pred CCceEEEEecc-cccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecch
Confidence 57899999999 99999988887774 89988663333211 10 01 11 112235
Q ss_pred HHhhhcCCCCEEEEec-ChhhHHHHHHHHHHcCCcEEEEec----------------------CCCChh--HHHHHHHHH
Q 020101 92 AEAKAETKANASAIYV-PPPFAAAAILEAMEAELDLVVCIT----------------------EGIPQH--DMVRVKAAL 146 (331)
Q Consensus 92 ~dl~~~~~iDlaii~v-p~~~~~~~v~~~~~~Gi~~ivi~t----------------------~G~~e~--~~~~l~~~a 146 (331)
+.+.....+|++|.+| -|+.-.++..+++++|.+.+.+-- .+..++ -..+|.+++
T Consensus 94 ~~i~~~~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~~GviyS~~~GDeP~~~mEL~efa 173 (438)
T COG4091 94 ELIIANDLIDVIIDATGVPEVGAKIALEAILHGKHLVMMNVEADVTIGPILKQQADAAGVIYSGGAGDEPSSCMELYEFA 173 (438)
T ss_pred hhhhcCCcceEEEEcCCCcchhhHhHHHHHhcCCeEEEEEeeeceeecHHHHHHHhhcCeEEeccCCCCcHHHHHHHHHH
Confidence 5555444699999998 467778899999999988754311 111122 245888888
Q ss_pred hccCCcEEEccCCCCcccCC
Q 020101 147 NNQSKTRLVGPNCPGVIKPG 166 (331)
Q Consensus 147 ~~~~gi~viGPnc~Gi~~p~ 166 (331)
+..|..++--. =|..||.
T Consensus 174 -~a~G~evv~aG-KGkNnpl 191 (438)
T COG4091 174 -SALGFEVVSAG-KGKNNPL 191 (438)
T ss_pred -HhcCCeEEecc-CCcCCCC
Confidence 78888766433 4555654
No 208
>PRK05865 hypothetical protein; Provisional
Probab=94.16 E-value=1 Score=49.28 Aligned_cols=88 Identities=18% Similarity=0.123 Sum_probs=58.1
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcc-------cccCHHHhhhcCCCCEEEEecCh-------
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLP-------VFNTVAEAKAETKANASAIYVPP------- 109 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p-------~y~sl~dl~~~~~iDlaii~vp~------- 109 (331)
+|+|.|++|.+|+.+++.|.+.|+++++....... ....++. -..+++++.+ ++|+++.+...
T Consensus 2 kILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~-~~~~~v~~v~gDL~D~~~l~~al~--~vD~VVHlAa~~~~~~~v 78 (854)
T PRK05865 2 RIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPD-SWPSSADFIAADIRDATAVESAMT--GADVVAHCAWVRGRNDHI 78 (854)
T ss_pred EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchh-hcccCceEEEeeCCCHHHHHHHHh--CCCEEEECCCcccchHHH
Confidence 68899999999999999999999998754432110 0001122 1223455555 68999987643
Q ss_pred --hhHHHHHHHHHHcCCcEEEEecCCC
Q 020101 110 --PFAAAAILEAMEAELDLVVCITEGI 134 (331)
Q Consensus 110 --~~~~~~v~~~~~~Gi~~ivi~t~G~ 134 (331)
.....+++.|.+.|++.++.+++..
T Consensus 79 Nv~GT~nLLeAa~~~gvkr~V~iSS~~ 105 (854)
T PRK05865 79 NIDGTANVLKAMAETGTGRIVFTSSGH 105 (854)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEECCcH
Confidence 2245567788888998877766653
No 209
>PRK08223 hypothetical protein; Validated
Probab=94.15 E-value=0.23 Score=47.41 Aligned_cols=118 Identities=15% Similarity=0.051 Sum_probs=66.1
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccC-----------HHHhhhcCCCCEEEEecCh
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNT-----------VAEAKAETKANASAIYVPP 109 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~s-----------l~dl~~~~~iDlaii~vp~ 109 (331)
+..+|+|||+ |-.|..++++|...|..-+..+|......+......+-+ ..+-..+.++++=|...+.
T Consensus 26 ~~s~VlIvG~-GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~ 104 (287)
T PRK08223 26 RNSRVAIAGL-GGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPE 104 (287)
T ss_pred hcCCEEEECC-CHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 4566889999 889999999999998764447777654222222222211 2222223355555555554
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCC
Q 020101 110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG 161 (331)
Q Consensus 110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~G 161 (331)
....+.+++.++ +...|+-.+..|+-+....+-+.| +++++.++-..+.|
T Consensus 105 ~l~~~n~~~ll~-~~DlVvD~~D~~~~~~r~~ln~~c-~~~~iP~V~~~~~g 154 (287)
T PRK08223 105 GIGKENADAFLD-GVDVYVDGLDFFEFDARRLVFAAC-QQRGIPALTAAPLG 154 (287)
T ss_pred ccCccCHHHHHh-CCCEEEECCCCCcHHHHHHHHHHH-HHcCCCEEEEeccC
Confidence 444555555553 566654333333223333444555 67788766655544
No 210
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=94.15 E-value=1.1 Score=40.89 Aligned_cols=115 Identities=16% Similarity=0.191 Sum_probs=77.0
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCCCCCCceecCcccc-cCHHHhhhc-CCCCEEEEe-cChhhHHHHHH
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKGGTEHLGLPVF-NTVAEAKAE-TKANASAIY-VPPPFAAAAIL 117 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP~~~g~~i~G~p~y-~sl~dl~~~-~~iDlaii~-vp~~~~~~~v~ 117 (331)
++|+|+.- |+.|....+++...+| ++++...+.. + ++-| ..-++++.. ++.|++|-+ ..|+....+.+
T Consensus 2 mki~vlt~-g~yG~R~~~nl~~~~f~~~~v~v~~~Pe---~---~~~fie~P~~~Lp~~~e~Di~va~~lHPDl~~~L~e 74 (224)
T COG1810 2 MKILVLTD-GEYGKRAVNNLACKGFKNQFVAVKEYPE---E---LPDFIEEPEDLLPKLPEADIVVAYGLHPDLLLALPE 74 (224)
T ss_pred cEEEEEee-ccchHHHHHhHhhhccccceEEEEeccc---c---ccchhhCHHHhcCCCCCCCEEEEeccCccHHHHHHH
Confidence 57888887 8999999999887665 3665544411 1 1222 123333322 468999966 78999999999
Q ss_pred HHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCC
Q 020101 118 EAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG 166 (331)
Q Consensus 118 ~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~ 166 (331)
.+.+.|++.+|+ ..+-++--..+|.+.+ .+.|+.+.-|.-+--+.|.
T Consensus 75 ~~~~~~~~alIv-p~~~~~g~rkqL~~~~-~~~g~e~~~p~p~C~Le~~ 121 (224)
T COG1810 75 KAAEGGVKALIV-PAEPPEGLRKQLKEFC-EELGVEFEAPEPFCSLEPN 121 (224)
T ss_pred HHHhCCccEEEE-ecCCChhHHHHHHHHh-hhcceeeecCCccccCCCC
Confidence 999999999775 3333333345677776 7888888877765544443
No 211
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.12 E-value=0.12 Score=43.52 Aligned_cols=91 Identities=12% Similarity=0.146 Sum_probs=57.8
Q ss_pred EEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce--ecCc-------------ccccCHHHhhhcCCCCEEEEecCh
Q 020101 45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--HLGL-------------PVFNTVAEAKAETKANASAIYVPP 109 (331)
Q Consensus 45 VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~--i~G~-------------p~y~sl~dl~~~~~iDlaii~vp~ 109 (331)
|+|+|+ |.+|....-.|.+.|.++.....++.. +. ..|+ +.+..-.. ....++|++++++..
T Consensus 1 I~I~G~-GaiG~~~a~~L~~~g~~V~l~~r~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~viv~vKa 77 (151)
T PF02558_consen 1 ILIIGA-GAIGSLYAARLAQAGHDVTLVSRSPRL-EAIKEQGLTITGPDGDETVQPPIVISAPS-ADAGPYDLVIVAVKA 77 (151)
T ss_dssp EEEEST-SHHHHHHHHHHHHTTCEEEEEESHHHH-HHHHHHCEEEEETTEEEEEEEEEEESSHG-HHHSTESEEEE-SSG
T ss_pred CEEECc-CHHHHHHHHHHHHCCCceEEEEccccH-HhhhheeEEEEecccceecccccccCcch-hccCCCcEEEEEecc
Confidence 578999 999999998888888886633333310 11 0111 11111111 112379999999999
Q ss_pred hhHHHHHHHHHHcCCc--EEEEecCCCChhH
Q 020101 110 PFAAAAILEAMEAELD--LVVCITEGIPQHD 138 (331)
Q Consensus 110 ~~~~~~v~~~~~~Gi~--~ivi~t~G~~e~~ 138 (331)
....++++.+...--+ .++.++.|+..++
T Consensus 78 ~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~ 108 (151)
T PF02558_consen 78 YQLEQALQSLKPYLDPNTTIVSLQNGMGNEE 108 (151)
T ss_dssp GGHHHHHHHHCTGEETTEEEEEESSSSSHHH
T ss_pred cchHHHHHHHhhccCCCcEEEEEeCCCCcHH
Confidence 9999999886654433 5788999986543
No 212
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=94.10 E-value=0.06 Score=46.52 Aligned_cols=88 Identities=15% Similarity=0.067 Sum_probs=62.8
Q ss_pred eEEEEEcCCCCCCcHHHHHHHH-cCCeEEEEeCCCCCCce--------------------------ecCcc--cc--cCH
Q 020101 43 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGGTE--------------------------HLGLP--VF--NTV 91 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~-~g~~iv~~VnP~~~g~~--------------------------i~G~p--~y--~sl 91 (331)
+||+|-|. |++|+.+++.+.. ..+++++.-||...-+. +.|.+ ++ .+.
T Consensus 1 ikVgINGf-GRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~~~~~~l~v~G~~I~~~~~~dp 79 (151)
T PF00044_consen 1 IKVGINGF-GRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVEVDDDGLIVNGKKIKVTEERDP 79 (151)
T ss_dssp EEEEEEST-SHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEEEETTEEEETTEEEEEEHTSSG
T ss_pred CEEEEECC-CcccHHHHHhhcccceEEEEEEecccccchhhhhhhhccccccceecccccccceeEeecccccchhhhhh
Confidence 58999999 9999999998875 47899976666621010 22322 11 234
Q ss_pred HHhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEec
Q 020101 92 AEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCIT 131 (331)
Q Consensus 92 ~dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t 131 (331)
+++|= +.++|+++.||+.-...+..+.-+++|+|.+++-+
T Consensus 80 ~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisa 120 (151)
T PF00044_consen 80 EEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISA 120 (151)
T ss_dssp GGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESS
T ss_pred cccccccccccEEEeccccceecccccccccccccceeecc
Confidence 45542 24789999999999888888999999999977533
No 213
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=94.09 E-value=0.34 Score=44.07 Aligned_cols=80 Identities=16% Similarity=0.184 Sum_probs=55.0
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc-----eecCcccc-cCHHHhhhcCCCCEEEEecChhhHHHHH
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-----EHLGLPVF-NTVAEAKAETKANASAIYVPPPFAAAAI 116 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~-----~i~G~p~y-~sl~dl~~~~~iDlaii~vp~~~~~~~v 116 (331)
++++|+|+ |++|..+.+.+...|++++-+ +.+.... +..+..+- .+.+|..+ ..|++++++|-+..++++
T Consensus 2 ~~~~i~Gt-GniG~alA~~~a~ag~eV~ig-s~r~~~~~~a~a~~l~~~i~~~~~~dA~~--~aDVVvLAVP~~a~~~v~ 77 (211)
T COG2085 2 MIIAIIGT-GNIGSALALRLAKAGHEVIIG-SSRGPKALAAAAAALGPLITGGSNEDAAA--LADVVVLAVPFEAIPDVL 77 (211)
T ss_pred cEEEEecc-ChHHHHHHHHHHhCCCeEEEe-cCCChhHHHHHHHhhccccccCChHHHHh--cCCEEEEeccHHHHHhHH
Confidence 34667777 999999999999999997633 2222101 12222222 24666665 689999999999999999
Q ss_pred HHHHH-cCCcE
Q 020101 117 LEAME-AELDL 126 (331)
Q Consensus 117 ~~~~~-~Gi~~ 126 (331)
.+..+ .+=|.
T Consensus 78 ~~l~~~~~~KI 88 (211)
T COG2085 78 AELRDALGGKI 88 (211)
T ss_pred HHHHHHhCCeE
Confidence 99886 44243
No 214
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=94.05 E-value=0.16 Score=49.44 Aligned_cols=89 Identities=12% Similarity=0.011 Sum_probs=62.6
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHc----CCeEEEEeCC---------------C---------CCCce--ecCc--cccc-
Q 020101 43 TRVICQGITGKNGTFHTEQAIEY----GTKMVGGVTP---------------K---------KGGTE--HLGL--PVFN- 89 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~----g~~iv~~VnP---------------~---------~~g~~--i~G~--p~y~- 89 (331)
++|+|+|+ |++|+.+++.+.+. .++++ .||. . ..|+. +.|. +++.
T Consensus 2 ~~IaInGf-GrIGR~~lr~l~e~~~~~~l~vv-aind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i~v~~~ 79 (336)
T PRK13535 2 IRVAINGF-GRIGRNVLRALYESGRRAEITVV-AINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDDAIRLLHE 79 (336)
T ss_pred eEEEEECc-CHHHHHHHHHHHhcCCCCceEEE-EecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEc
Confidence 57999999 99999999998874 35566 4442 0 01111 2343 3332
Q ss_pred -CHHHhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCC
Q 020101 90 -TVAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGI 134 (331)
Q Consensus 90 -sl~dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~ 134 (331)
++++++= +.++|+++.++......+.+...+++|.+.+++ +.-+
T Consensus 80 ~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~i-Sap~ 125 (336)
T PRK13535 80 RDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLF-SHPG 125 (336)
T ss_pred CCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEe-cCCc
Confidence 5666653 248999999999999999999999999998664 5434
No 215
>PLN02235 ATP citrate (pro-S)-lyase
Probab=94.04 E-value=0.43 Score=47.84 Aligned_cols=127 Identities=18% Similarity=0.153 Sum_probs=84.3
Q ss_pred CCCCEEEEecChHHHHHHHHHHHhCC--CCceEEEecCCCCCCCCCHHHHHHHhh----cCCCccEEEEEEccCCCcHHH
Q 020101 179 KPGRIGIVSRSGTLTYEAVFQTTAVG--LGQSTCVGIGGDPFNGTNFVDCVTKFI----ADPQTEGIILIGEIGGTAEED 252 (331)
Q Consensus 179 ~~G~valisQSG~~~~~~~~~~~~~g--~g~s~~vs~Gn~~~~~v~~~d~l~~l~----~Dp~T~~I~ly~E~~g~~~~~ 252 (331)
..|+|+.+.--++++.+.++.....| --...|.-+|+.+ +.-...+.++-+. .||++++|++-+=++=.+-.+
T Consensus 268 ldG~Ig~mvnGAGlamaTmD~I~~~G~~g~pANFlDvGG~a-~~e~v~~a~~iil~~~~~~~~vk~ilvnIfGGI~rcd~ 346 (423)
T PLN02235 268 PKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAP-NEEEVLQYARVVIDCATANPDGRKRALLIGGGIANFTD 346 (423)
T ss_pred CCCeEEEEecCcHHHHHHHHHHHHcCCCCCCceeeecCCCC-CHHHHHHHHHHHHhhhhcCCCCcEEEEEEecccccchh
Confidence 45999999999999999999998888 4578899999875 2455556666555 799999997776432111112
Q ss_pred -H---HHHHHHhC--------CCCCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcC--CeEeCCHhHHHH
Q 020101 253 -A---AALIKESG--------TEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAG--VTVVESPAKIGA 318 (331)
Q Consensus 253 -~---~~f~~a~r--------~~KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aG--v~~v~~~~el~~ 318 (331)
+ +-.+++++ .++||||=..|.....|. ..++.++++.| +...+.-..|.+
T Consensus 347 VA~tf~GIi~A~~e~~~kl~~~~vpivVRl~GtN~eeG~----------------~il~e~~~~~gl~i~~~~~~~~m~~ 410 (423)
T PLN02235 347 VAATFNGIIRALREKESKLKAARMHIFVRRGGPNYQKGL----------------AKMRALGEEIGVPIEVYGPEATMTG 410 (423)
T ss_pred hhhhhhHHHHHHHHhhhccccCCccEEEECCCCCHHHHH----------------HHHHHhHHhcCCcEEEeCCCCCHHH
Confidence 2 23445554 367998877776554122 45566677999 566662224555
Q ss_pred HHHH
Q 020101 319 AMLE 322 (331)
Q Consensus 319 ~~~a 322 (331)
+++.
T Consensus 411 a~~~ 414 (423)
T PLN02235 411 ICKQ 414 (423)
T ss_pred HHHH
Confidence 5543
No 216
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.03 E-value=0.12 Score=43.12 Aligned_cols=113 Identities=14% Similarity=0.191 Sum_probs=65.9
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCc-cccc----------CHHHhhhcCCCCEEEEecCh
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGL-PVFN----------TVAEAKAETKANASAIYVPP 109 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~-p~y~----------sl~dl~~~~~iDlaii~vp~ 109 (331)
|..+|+|+|+ |..|..++++|...|..-+..+|+.....+..+. +.|. .+.+...+.+|++=+...+.
T Consensus 1 r~~~v~iiG~-G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~ 79 (135)
T PF00899_consen 1 RNKRVLIIGA-GGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPE 79 (135)
T ss_dssp HT-EEEEEST-SHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEES
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeec
Confidence 3568999999 8899999999999888533377776542222221 1221 13333333356666666666
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccC
Q 020101 110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN 158 (331)
Q Consensus 110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPn 158 (331)
....+..++.. .+...++..+.- .+....+.+.+ +++++.+|--+
T Consensus 80 ~~~~~~~~~~~-~~~d~vi~~~d~--~~~~~~l~~~~-~~~~~p~i~~~ 124 (135)
T PF00899_consen 80 KIDEENIEELL-KDYDIVIDCVDS--LAARLLLNEIC-REYGIPFIDAG 124 (135)
T ss_dssp HCSHHHHHHHH-HTSSEEEEESSS--HHHHHHHHHHH-HHTT-EEEEEE
T ss_pred ccccccccccc-cCCCEEEEecCC--HHHHHHHHHHH-HHcCCCEEEEE
Confidence 66556666666 467765543322 23334556666 78888876444
No 217
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=93.96 E-value=0.2 Score=50.03 Aligned_cols=100 Identities=17% Similarity=0.150 Sum_probs=60.5
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEE-EeCCCCCC-ceecCcccccCHHHhhhcCCCCEEEEecChhhHHHH-HH
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGG-TEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA-IL 117 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~-~VnP~~~g-~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~-v~ 117 (331)
...+|+|+|+ |+.|+.+++.++..|.+++. -+||...- ..-.|..+. +++++.. ..|++|.++......+. ..
T Consensus 194 ~Gk~VvViG~-G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~--~aDVVItaTG~~~vI~~~~~ 269 (406)
T TIGR00936 194 AGKTVVVAGY-GWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAK--IGDIFITATGNKDVIRGEHF 269 (406)
T ss_pred CcCEEEEECC-CHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHh--cCCEEEECCCCHHHHHHHHH
Confidence 4567899999 99999999999999998652 24664310 012455443 4677665 78999998876555442 33
Q ss_pred HHHHcCCcEEEEecCCCC-hhHHHHHHHHH
Q 020101 118 EAMEAELDLVVCITEGIP-QHDMVRVKAAL 146 (331)
Q Consensus 118 ~~~~~Gi~~ivi~t~G~~-e~~~~~l~~~a 146 (331)
.+.+.|. +++....+. |-+...|.+.+
T Consensus 270 ~~mK~Ga--iliN~G~~~~eId~~aL~~~~ 297 (406)
T TIGR00936 270 ENMKDGA--IVANIGHFDVEIDVKALEELA 297 (406)
T ss_pred hcCCCCc--EEEEECCCCceeCHHHHHHHH
Confidence 3334443 333333333 33445555443
No 218
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=93.86 E-value=1.3 Score=41.07 Aligned_cols=30 Identities=13% Similarity=0.237 Sum_probs=24.6
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcC--CeEEEEeC
Q 020101 44 RVICQGITGKNGTFHTEQAIEYG--TKMVGGVT 74 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g--~~iv~~Vn 74 (331)
+|+|.|++|.+|+.+++.|.+.| ++++ .++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~-~~~ 32 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVI-VLD 32 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEE-Eec
Confidence 47889999999999999988765 6776 444
No 219
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.85 E-value=0.55 Score=43.63 Aligned_cols=64 Identities=19% Similarity=0.244 Sum_probs=48.6
Q ss_pred CCeEEEEEcCC--CCCCcHHHHHHHHcCCeEEEEeCCCCC-Cc-----------eecCcccccCHHHhhhcCCCCEEEEe
Q 020101 41 KNTRVICQGIT--GKNGTFHTEQAIEYGTKMVGGVTPKKG-GT-----------EHLGLPVFNTVAEAKAETKANASAIY 106 (331)
Q Consensus 41 k~~~VaIvGas--gk~G~~~~~~l~~~g~~iv~~VnP~~~-g~-----------~i~G~p~y~sl~dl~~~~~iDlaii~ 106 (331)
.+++|++|.-+ ||+| .+++.++++|++-...|||+.. .+ -+.+.++|+|+++... ++|+++-+
T Consensus 3 ~~i~iVLVep~~~gNIG-~vARaMKNfGl~eL~LV~Pr~~~~eeA~a~A~gA~dile~A~i~~tL~eAl~--d~~~v~aT 79 (242)
T COG0565 3 ENIRIVLVEPSHPGNIG-SVARAMKNFGLSELRLVNPRAGLDEEARALAAGARDILENAKIVDTLEEALA--DCDLVVAT 79 (242)
T ss_pred CccEEEEEcCCCCccHH-HHHHHHHhCCcceEEEECCCCCCCHHHHHHhccchhhhccCeeecCHHHHhc--CCCEEEEe
Confidence 35788888763 5666 4789999999974459999873 11 1568899999999998 78888866
Q ss_pred c
Q 020101 107 V 107 (331)
Q Consensus 107 v 107 (331)
+
T Consensus 80 t 80 (242)
T COG0565 80 T 80 (242)
T ss_pred c
Confidence 5
No 220
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=93.84 E-value=0.23 Score=51.76 Aligned_cols=88 Identities=17% Similarity=0.286 Sum_probs=54.1
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEe-CCCCCCcee-----------cC------cccc-------cCHHHhhh
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKGGTEH-----------LG------LPVF-------NTVAEAKA 96 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~V-nP~~~g~~i-----------~G------~p~y-------~sl~dl~~ 96 (331)
...|+|.|++|.+|+.+++.|.+.|+++++.+ |+... ... .| +.++ .++++...
T Consensus 80 gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl-~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLg 158 (576)
T PLN03209 80 EDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRA-ESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALG 158 (576)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHH-HHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhc
Confidence 34578899999999999999999999977443 22110 000 01 1111 12333333
Q ss_pred cCCCCEEEEecChh----------------hHHHHHHHHHHcCCcEEEEecC
Q 020101 97 ETKANASAIYVPPP----------------FAAAAILEAMEAELDLVVCITE 132 (331)
Q Consensus 97 ~~~iDlaii~vp~~----------------~~~~~v~~~~~~Gi~~ivi~t~ 132 (331)
++|++|.+.... ....+++.|.+.|++.+|++++
T Consensus 159 --giDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSS 208 (576)
T PLN03209 159 --NASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTS 208 (576)
T ss_pred --CCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEcc
Confidence 689888765321 2445667777788888777776
No 221
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=93.82 E-value=0.35 Score=48.66 Aligned_cols=68 Identities=24% Similarity=0.281 Sum_probs=43.1
Q ss_pred cCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce-ecCcc----------------cccCHHHhhhcCC
Q 020101 38 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE-HLGLP----------------VFNTVAEAKAETK 99 (331)
Q Consensus 38 l~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~-i~G~p----------------~y~sl~dl~~~~~ 99 (331)
|.-+.++|+|||. |.||.....++.+ +++++ ++|.+... +. ..|.. .+.+-.+..+ +
T Consensus 2 ~~~~~mkI~vIGl-GyvGlpmA~~la~-~~~V~-g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~--~ 76 (425)
T PRK15182 2 FGIDEVKIAIIGL-GYVGLPLAVEFGK-SRQVV-GFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIK--E 76 (425)
T ss_pred CCCCCCeEEEECc-CcchHHHHHHHhc-CCEEE-EEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHc--C
Confidence 4344578999999 9999888888766 68877 55554310 11 12221 2333223344 6
Q ss_pred CCEEEEecChh
Q 020101 100 ANASAIYVPPP 110 (331)
Q Consensus 100 iDlaii~vp~~ 110 (331)
.|++++++|..
T Consensus 77 advvii~Vptp 87 (425)
T PRK15182 77 CNFYIITVPTP 87 (425)
T ss_pred CCEEEEEcCCC
Confidence 89999999965
No 222
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=93.78 E-value=0.25 Score=45.08 Aligned_cols=87 Identities=18% Similarity=0.227 Sum_probs=54.7
Q ss_pred CHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHh---C-CCCCEEEEEeCCCCCCCCC-C--------CCCcccc
Q 020101 222 NFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKES---G-TEKPIVAFIAGLTAPPGRR-M--------GHAGAIV 288 (331)
Q Consensus 222 ~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~---r-~~KPVvv~k~Grs~~~g~~-~--------sHtga~a 288 (331)
++.+.|+.+.+||++++|++.+++.|-...+..++.+++ | .+||||++-.|-+.. +.- + ..++.+.
T Consensus 33 ~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kpVia~~~~~~sg-gy~lasaad~I~a~p~~~vg 111 (222)
T cd07018 33 DLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPVIAYADGYSQG-QYYLASAADEIYLNPSGSVE 111 (222)
T ss_pred HHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCeEEEEeCCCCch-hhhhhhhCCEEEECCCceEE
Confidence 355666678889999999999998765566666665555 3 689999997763332 221 1 2223322
Q ss_pred cCC-CCCHHHHHHHHHHcCCeE
Q 020101 289 SGG-KGTAQDKIKTLREAGVTV 309 (331)
Q Consensus 289 ~~~-~g~~~~~~a~~~~aGv~~ 309 (331)
+.+ .....-+..++++.||-.
T Consensus 112 ~iGv~~~~~~~~~ll~klGv~~ 133 (222)
T cd07018 112 LTGLSAETLFFKGLLDKLGVEV 133 (222)
T ss_pred eeccchhhhhHHHHHHHcCCcE
Confidence 110 012334678899999864
No 223
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=93.65 E-value=0.57 Score=45.61 Aligned_cols=109 Identities=18% Similarity=0.141 Sum_probs=66.8
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHc--------C--CeEEEEeCCCCCCc-eecCcc---cccCH-----HHhhhcCCCC
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEY--------G--TKMVGGVTPKKGGT-EHLGLP---VFNTV-----AEAKAETKAN 101 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~--------g--~~iv~~VnP~~~g~-~i~G~p---~y~sl-----~dl~~~~~iD 101 (331)
+.++|+|+|. |..|+.+++.+.+. | +++++..+.+..-. ...+.+ ...+. .++.....+|
T Consensus 2 ~~v~v~l~G~-G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (333)
T COG0460 2 KTVKVGLLGL-GTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDID 80 (333)
T ss_pred ceEEEEEEcc-CchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccchhhheecccccccHhhhccccCC
Confidence 5789999999 99999988766542 3 45666666543111 122222 11234 4444445788
Q ss_pred EEEEecCh--hhH--HHHHHHHHHcCCcEEEEecCC---CChhHHHHHHHHHhccCCcEEE
Q 020101 102 ASAIYVPP--PFA--AAAILEAMEAELDLVVCITEG---IPQHDMVRVKAALNNQSKTRLV 155 (331)
Q Consensus 102 laii~vp~--~~~--~~~v~~~~~~Gi~~ivi~t~G---~~e~~~~~l~~~a~~~~gi~vi 155 (331)
+++-.++. +.. .+.+.+++++|.+. .|+. ++. .-.+|.+.| +++|..+.
T Consensus 81 vvve~~~~d~~~~~~~~~~~~al~~GkhV---VTaNK~~lA~-~~~el~~~A-~~~g~~l~ 136 (333)
T COG0460 81 VVVELVGGDVEPAEPADLYLKALENGKHV---VTANKALLAL-HYHELREAA-EKNGVKLL 136 (333)
T ss_pred EEEecCcccCCchhhHHHHHHHHHcCCeE---ECCCchHhHh-hHHHHHHHH-HHhCCeEE
Confidence 88876665 333 48899999999886 3542 222 244677776 67775544
No 224
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=93.58 E-value=0.29 Score=46.66 Aligned_cols=115 Identities=15% Similarity=0.241 Sum_probs=72.3
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHh-----------hhcCCCCEEEEecCh
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEA-----------KAETKANASAIYVPP 109 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl-----------~~~~~iDlaii~vp~ 109 (331)
++.+|.|+|+ |-.|..++++|...|..-+..+|+.....+..+...|-+-+|+ ..+.++++-|.....
T Consensus 18 ~~s~VLIvG~-gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~ 96 (286)
T cd01491 18 QKSNVLISGL-GGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTG 96 (286)
T ss_pred hcCcEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 4567899999 7899999999999998755588887643333343333222222 223456666655443
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCccc
Q 020101 110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIK 164 (331)
Q Consensus 110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~ 164 (331)
....+.+ .+... |+.+.. +.+....+.++| +++++.++--++.|++-
T Consensus 97 ~~~~~~l-----~~fdv-VV~~~~-~~~~~~~in~~c-~~~~ipfI~a~~~G~~G 143 (286)
T cd01491 97 PLTTDEL-----LKFQV-VVLTDA-SLEDQLKINEFC-HSPGIKFISADTRGLFG 143 (286)
T ss_pred cCCHHHH-----hcCCE-EEEecC-CHHHHHHHHHHH-HHcCCEEEEEeccccEE
Confidence 3222222 23455 444443 555556777887 78999999888888765
No 225
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.51 E-value=0.23 Score=45.51 Aligned_cols=85 Identities=19% Similarity=0.176 Sum_probs=55.2
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce----ecCcccc---cC----HHHhhhcCCCCEEEEecChh
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE----HLGLPVF---NT----VAEAKAETKANASAIYVPPP 110 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~----i~G~p~y---~s----l~dl~~~~~iDlaii~vp~~ 110 (331)
++++|+|+ |+.|+.+++.|.+.|++++ .|+..... .+ ..+..++ .+ |+++.- .+.|+++.+|..+
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~~Vv-~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi-~~aD~vva~t~~d 77 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGHNVV-LIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGI-DDADAVVAATGND 77 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCCceE-EEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCC-CcCCEEEEeeCCC
Confidence 36889999 9999999999999999977 55443310 11 1222222 22 445422 3789999999986
Q ss_pred hHHHHHHHHH-H-cCCcEEEEe
Q 020101 111 FAAAAILEAM-E-AELDLVVCI 130 (331)
Q Consensus 111 ~~~~~v~~~~-~-~Gi~~ivi~ 130 (331)
..--++-.+. + .|++.+|.-
T Consensus 78 ~~N~i~~~la~~~~gv~~viar 99 (225)
T COG0569 78 EVNSVLALLALKEFGVPRVIAR 99 (225)
T ss_pred HHHHHHHHHHHHhcCCCcEEEE
Confidence 6555444433 3 689997753
No 226
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=93.50 E-value=0.47 Score=42.62 Aligned_cols=117 Identities=14% Similarity=0.172 Sum_probs=68.1
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCccccc-----------CHHHhhhcCCCCEEEEecChh
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFN-----------TVAEAKAETKANASAIYVPPP 110 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~-----------sl~dl~~~~~iDlaii~vp~~ 110 (331)
+.+|.|+|+ |..|..++++|...|..-+..+|+.....+..+...+- .+.+-..+.+||+-+-+.+..
T Consensus 21 ~s~VlIiG~-gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~ 99 (197)
T cd01492 21 SARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDD 99 (197)
T ss_pred hCcEEEEcC-CHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecC
Confidence 456888999 66999999999999987445888876422222222111 122223334677766554432
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCccc
Q 020101 111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIK 164 (331)
Q Consensus 111 ~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~ 164 (331)
.. +...+.. .+...++ .+.. +.+....+.+.| +++++.++-..+.|+.-
T Consensus 100 ~~-~~~~~~~-~~~dvVi-~~~~-~~~~~~~ln~~c-~~~~ip~i~~~~~G~~G 148 (197)
T cd01492 100 IS-EKPEEFF-SQFDVVV-ATEL-SRAELVKINELC-RKLGVKFYATGVHGLFG 148 (197)
T ss_pred cc-ccHHHHH-hCCCEEE-ECCC-CHHHHHHHHHHH-HHcCCCEEEEEecCCEE
Confidence 22 2222222 4566644 3433 344455666777 78898888777766543
No 227
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.50 E-value=0.24 Score=44.65 Aligned_cols=37 Identities=27% Similarity=0.383 Sum_probs=31.1
Q ss_pred CCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101 39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 77 (331)
Q Consensus 39 ~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~ 77 (331)
.-+..+|+|||+ |++|...++.|.+.|.+++ .|+|..
T Consensus 7 ~l~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~-VIs~~~ 43 (202)
T PRK06718 7 DLSNKRVVIVGG-GKVAGRRAITLLKYGAHIV-VISPEL 43 (202)
T ss_pred EcCCCEEEEECC-CHHHHHHHHHHHHCCCeEE-EEcCCC
Confidence 446678999999 9999999999999998877 888864
No 228
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=93.48 E-value=0.3 Score=45.87 Aligned_cols=84 Identities=18% Similarity=0.087 Sum_probs=57.9
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEe-CCCCCCce---ecCcccc------cCHHHhhhcCCCCEEEEecChhh--
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKGGTE---HLGLPVF------NTVAEAKAETKANASAIYVPPPF-- 111 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~V-nP~~~g~~---i~G~p~y------~sl~dl~~~~~iDlaii~vp~~~-- 111 (331)
+|.|.|+|+- |+.+.+.|.+.|+++++-+ .+.. .+. ..+.+++ .++.++..++++|++|+++.|-+
T Consensus 2 ~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~-~~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtHPfA~~ 79 (256)
T TIGR00715 2 TVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEG-KHLYPIHQALTVHTGALDPQELREFLKRHSIDILVDATHPFAAQ 79 (256)
T ss_pred eEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCc-cccccccCCceEEECCCCHHHHHHHHHhcCCCEEEEcCCHHHHH
Confidence 6889999775 9999999998899876543 3322 111 1123333 24656666668999999998844
Q ss_pred -HHHHHHHHHHcCCcEEEE
Q 020101 112 -AAAAILEAMEAELDLVVC 129 (331)
Q Consensus 112 -~~~~v~~~~~~Gi~~ivi 129 (331)
...+.+.|.+.|++.+=.
T Consensus 80 is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 80 ITTNATAVCKELGIPYVRF 98 (256)
T ss_pred HHHHHHHHHHHhCCcEEEE
Confidence 466778888999988543
No 229
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=93.45 E-value=0.14 Score=49.15 Aligned_cols=79 Identities=19% Similarity=0.229 Sum_probs=52.6
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce---ecCccc--ccCHHHhhhcCCCCEEEEecChhhHHH
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGLPV--FNTVAEAKAETKANASAIYVPPPFAAA 114 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~---i~G~p~--y~sl~dl~~~~~iDlaii~vp~~~~~~ 114 (331)
+..+|+|+|+ |.+|+.+++.+...|...+..+|+.... .+ ..|... +.++.+... +.|+++.+||.....+
T Consensus 177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~--~aDvVi~at~~~~~~~ 253 (311)
T cd05213 177 KGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLN--EADVVISATGAPHYAK 253 (311)
T ss_pred cCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHh--cCCEEEECCCCCchHH
Confidence 4677999999 9999999999988776544478876521 11 123322 223444444 6899999999877755
Q ss_pred HHHHHHHc
Q 020101 115 AILEAMEA 122 (331)
Q Consensus 115 ~v~~~~~~ 122 (331)
.+..+.+.
T Consensus 254 ~~~~~~~~ 261 (311)
T cd05213 254 IVERAMKK 261 (311)
T ss_pred HHHHHHhh
Confidence 55655543
No 230
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.42 E-value=0.18 Score=48.79 Aligned_cols=66 Identities=21% Similarity=0.209 Sum_probs=46.8
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce-----------------------ecCcccccCHHHhhhcCC
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-----------------------HLGLPVFNTVAEAKAETK 99 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~-----------------------i~G~p~y~sl~dl~~~~~ 99 (331)
.+|+|||+ |.||..++..+...|++++ .+|+.....+ ...+....++++... +
T Consensus 8 ~~VaVIGa-G~MG~giA~~~a~aG~~V~-l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~--~ 83 (321)
T PRK07066 8 KTFAAIGS-GVIGSGWVARALAHGLDVV-AWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVA--D 83 (321)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhc--C
Confidence 56889999 9999999999999999976 6666431000 011233457777766 7
Q ss_pred CCEEEEecChhhH
Q 020101 100 ANASAIYVPPPFA 112 (331)
Q Consensus 100 iDlaii~vp~~~~ 112 (331)
.|+++-++|.+..
T Consensus 84 aDlViEavpE~l~ 96 (321)
T PRK07066 84 ADFIQESAPEREA 96 (321)
T ss_pred CCEEEECCcCCHH
Confidence 9999999996653
No 231
>PLN02214 cinnamoyl-CoA reductase
Probab=93.42 E-value=0.53 Score=45.45 Aligned_cols=90 Identities=20% Similarity=0.202 Sum_probs=56.9
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC-CCCCC-----------cee----cCcccccCHHHhhhcCCCCEEE
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGG-----------TEH----LGLPVFNTVAEAKAETKANASA 104 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn-P~~~g-----------~~i----~G~p~y~sl~dl~~~~~iDlai 104 (331)
+..+|+|.|++|-+|+.+++.|.+.|+++++.+. +.... ..+ ..+.-..+++++.. .+|+++
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~Vi 86 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAID--GCDGVF 86 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHh--cCCEEE
Confidence 4567899999999999999999999999775432 21100 000 01111223455555 689888
Q ss_pred EecCh-----h--------hHHHHHHHHHHcCCcEEEEecC
Q 020101 105 IYVPP-----P--------FAAAAILEAMEAELDLVVCITE 132 (331)
Q Consensus 105 i~vp~-----~--------~~~~~v~~~~~~Gi~~ivi~t~ 132 (331)
-+..+ + ....+++.|.+.|++.+|..++
T Consensus 87 h~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS 127 (342)
T PLN02214 87 HTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSS 127 (342)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 66532 1 2445677888889987776554
No 232
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=93.31 E-value=7.2 Score=38.25 Aligned_cols=210 Identities=18% Similarity=0.190 Sum_probs=121.8
Q ss_pred cccCHHHhhhc-CCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCC--cEEEccCCCCcc
Q 020101 87 VFNTVAEAKAE-TKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSK--TRLVGPNCPGVI 163 (331)
Q Consensus 87 ~y~sl~dl~~~-~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~g--i~viGPnc~Gi~ 163 (331)
.|..+..+.++ ....-+|-++...+++.+.-.|-..|++..|++..+.+..-...+ |.+| +.+.|.|.-==.
T Consensus 60 A~n~i~~Ls~e~~~~~gViaaSaGNHaQGvA~aa~~lGi~a~IvMP~~tp~~Kv~a~-----r~~GaeVil~g~~~dda~ 134 (347)
T COG1171 60 AYNKLSSLSEEEERAAGVIAASAGNHAQGVAYAAKRLGIKATIVMPETTPKIKVDAT-----RGYGAEVILHGDNFDDAY 134 (347)
T ss_pred HHHHHHhcChhhhhcCceEEecCCcHHHHHHHHHHHhCCCEEEEecCCCcHHHHHHH-----HhcCCEEEEECCCHHHHH
Confidence 45556666532 245667777778888999999999999999998887764332222 3344 445555431000
Q ss_pred cCC-----CcccccCCCCCCCCCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhc-CCCcc
Q 020101 164 KPG-----ECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIA-DPQTE 237 (331)
Q Consensus 164 ~p~-----~~~~~~~~~~~~~~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~-Dp~T~ 237 (331)
... .-...|.|. --+--+|.--|+++.++++...+. -=.-++.+|+-- + ++-+..|+.. .|+||
T Consensus 135 ~~a~~~a~~~G~~~i~p----fD~p~viAGQGTi~lEileq~~~~--~d~v~vpvGGGG---L-isGia~~~k~~~p~~~ 204 (347)
T COG1171 135 AAAEELAEEEGLTFVPP----FDDPDVIAGQGTIALEILEQLPDL--PDAVFVPVGGGG---L-ISGIATALKALSPEIK 204 (347)
T ss_pred HHHHHHHHHcCCEEeCC----CCCcceeecccHHHHHHHHhcccc--CCEEEEecCccH---H-HHHHHHHHHHhCCCCe
Confidence 000 000112221 123457777899999998776533 123477888752 1 2233334433 57799
Q ss_pred EEEEEEccCCCcHHHHHHHHHHhCCCCCEEEEE-eCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHH
Q 020101 238 GIILIGEIGGTAEEDAAALIKESGTEKPIVAFI-AGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKI 316 (331)
Q Consensus 238 ~I~ly~E~~g~~~~~~~~f~~a~r~~KPVvv~k-~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el 316 (331)
+|.+--|. +..+.++++.+++++.+. .++-.. |.+..+-|.+ .|+-+-+-..=++.=|-+|+
T Consensus 205 vIGVEp~~-------a~~~~~Sl~~G~~~~~~~~~~tiaD-G~av~~~g~~---------tf~i~~~~vd~~v~V~e~ei 267 (347)
T COG1171 205 VIGVEPEG-------APSMYASLKAGKIVVVLPDVGTIAD-GLAVKRPGDL---------TFEILRELVDDIVLVDEDEI 267 (347)
T ss_pred EEEEeeCC-------ChHHHHHHHcCCceeecCCCCcccc-ccccCCCCHH---------HHHHHHHcCCcEEEECHHHH
Confidence 99887775 345677777787777776 665555 5543343333 34333333333444455788
Q ss_pred HHHHHHHHHhcC
Q 020101 317 GAAMLEVFKQRG 328 (331)
Q Consensus 317 ~~~~~a~~~~~~ 328 (331)
..+.+.+++..+
T Consensus 268 ~~am~~l~~~~~ 279 (347)
T COG1171 268 CAAMRDLFERTK 279 (347)
T ss_pred HHHHHHHHhcCC
Confidence 888888777543
No 233
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=93.08 E-value=0.15 Score=49.45 Aligned_cols=186 Identities=15% Similarity=0.152 Sum_probs=100.4
Q ss_pred CCCeEEEEEcCCCCCCcHHHHHHHHc--CC---e-EE--EE---------------eCC-----CCC-C-ceecCccccc
Q 020101 40 DKNTRVICQGITGKNGTFHTEQAIEY--GT---K-MV--GG---------------VTP-----KKG-G-TEHLGLPVFN 89 (331)
Q Consensus 40 ~k~~~VaIvGasgk~G~~~~~~l~~~--g~---~-iv--~~---------------VnP-----~~~-g-~~i~G~p~y~ 89 (331)
.++++|+|||. |++|+.+.+.+.+. .+ + .| +. +|- ++- | +--..+.+.+
T Consensus 19 ~~~~kV~ivGs-GnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~ 97 (372)
T KOG2711|consen 19 RDPLKVCIVGS-GNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVP 97 (372)
T ss_pred cCceEEEEEcc-ChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecc
Confidence 34588999998 99999988765542 12 1 11 01 111 110 0 0012344556
Q ss_pred CHHHhhhcCCCCEEEEecChhhHHHHHHHHHH---cCCcEEEEecCCCCh--hH--HHHHHHHHhccCCcE---EEccCC
Q 020101 90 TVAEAKAETKANASAIYVPPPFAAAAILEAME---AELDLVVCITEGIPQ--HD--MVRVKAALNNQSKTR---LVGPNC 159 (331)
Q Consensus 90 sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~---~Gi~~ivi~t~G~~e--~~--~~~l~~~a~~~~gi~---viGPnc 159 (331)
++.+... +.|++|..+|.+....+++++.. .++.. |-++-||.- +. ..-+-+...++.|+. +.|||-
T Consensus 98 dl~ea~~--dADilvf~vPhQf~~~ic~~l~g~vk~~~~a-ISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~GaNi 174 (372)
T KOG2711|consen 98 DLVEAAK--DADILVFVVPHQFIPRICEQLKGYVKPGATA-ISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLMGANI 174 (372)
T ss_pred hHHHHhc--cCCEEEEeCChhhHHHHHHHHhcccCCCCeE-EEeecceeccCCCCceeehHHHHHHHhCCCceeecCCch
Confidence 7777766 78999999999999999888764 46666 335668752 22 222223333556654 678884
Q ss_pred CC-cccCC--CcccccCCCC--------CCCCCCEEEEecChHHHHHHHHHHH---hCCCCceEEEecCCCC---CCCCC
Q 020101 160 PG-VIKPG--ECKIGIMPGY--------IHKPGRIGIVSRSGTLTYEAVFQTT---AVGLGQSTCVGIGGDP---FNGTN 222 (331)
Q Consensus 160 ~G-i~~p~--~~~~~~~~~~--------~~~~G~valisQSG~~~~~~~~~~~---~~g~g~s~~vs~Gn~~---~~~v~ 222 (331)
-. +.+-. ...++..+.. .++.=+.-+.-++-.-+.++...++ .-+.||.--...||.. ..-.+
T Consensus 175 A~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTkaAi~r~G 254 (372)
T KOG2711|consen 175 ASEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKAAIIRLG 254 (372)
T ss_pred HHHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchHHHHHHhh
Confidence 32 11111 1112222110 0222234455555555545543332 3467888888888752 22445
Q ss_pred HHHHHHH
Q 020101 223 FVDCVTK 229 (331)
Q Consensus 223 ~~d~l~~ 229 (331)
+.|++.|
T Consensus 255 l~Em~~F 261 (372)
T KOG2711|consen 255 LLEMIKF 261 (372)
T ss_pred HHHHHHH
Confidence 5565554
No 234
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=93.07 E-value=0.37 Score=44.65 Aligned_cols=82 Identities=18% Similarity=0.165 Sum_probs=52.2
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChh-------------
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPP------------- 110 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~------------- 110 (331)
+|+|+|++|-+|+.+++.|.+.|++++ .++... ..+.-..++.++.+..++|+++.+....
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~-~~~r~~-----~d~~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~ 74 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVV-ALTSSQ-----LDLTDPEALERLLRAIRPDAVVNTAAYTDVDGAESDPEKAF 74 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEE-EeCCcc-----cCCCCHHHHHHHHHhCCCCEEEECCccccccccccCHHHHH
Confidence 478899999999999999999999977 444321 1122233455555544579998766321
Q ss_pred -----hHHHHHHHHHHcCCcEEEEecC
Q 020101 111 -----FAAAAILEAMEAELDLVVCITE 132 (331)
Q Consensus 111 -----~~~~~v~~~~~~Gi~~ivi~t~ 132 (331)
....+++.|.+.+.+. +.+++
T Consensus 75 ~~n~~~~~~l~~~~~~~~~~~-v~~Ss 100 (287)
T TIGR01214 75 AVNALAPQNLARAAARHGARL-VHIST 100 (287)
T ss_pred HHHHHHHHHHHHHHHHcCCeE-EEEee
Confidence 1344555666677654 44454
No 235
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.07 E-value=0.51 Score=46.06 Aligned_cols=116 Identities=15% Similarity=0.188 Sum_probs=65.3
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccC-------------HHHhhhcCCCCEEEEec
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNT-------------VAEAKAETKANASAIYV 107 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~s-------------l~dl~~~~~iDlaii~v 107 (331)
+..+|+|||+ |..|..++++|...|..-+..||+.....+..+...+-+ ..+-..+.++++-|...
T Consensus 23 ~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~ 101 (338)
T PRK12475 23 REKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV 101 (338)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence 3456899999 889999999999999854448888763222222221111 11222223456655555
Q ss_pred ChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCC
Q 020101 108 PPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG 161 (331)
Q Consensus 108 p~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~G 161 (331)
+.+...+.++++++ +...++..+..+ +....+.+.| +++++.+|--.+.|
T Consensus 102 ~~~~~~~~~~~~~~-~~DlVid~~D~~--~~r~~in~~~-~~~~ip~i~~~~~g 151 (338)
T PRK12475 102 VTDVTVEELEELVK-EVDLIIDATDNF--DTRLLINDLS-QKYNIPWIYGGCVG 151 (338)
T ss_pred eccCCHHHHHHHhc-CCCEEEEcCCCH--HHHHHHHHHH-HHcCCCEEEEEecc
Confidence 54444455555543 567666544333 2222344555 67787766544544
No 236
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=93.04 E-value=0.68 Score=42.42 Aligned_cols=109 Identities=17% Similarity=0.064 Sum_probs=69.3
Q ss_pred CCCCCcHHHHHHHHc-CCe-EEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEE-ecChhhHHHHHHHHHHcCCcEE
Q 020101 51 TGKNGTFHTEQAIEY-GTK-MVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAI-YVPPPFAAAAILEAMEAELDLV 127 (331)
Q Consensus 51 sgk~G~~~~~~l~~~-g~~-iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii-~vp~~~~~~~v~~~~~~Gi~~i 127 (331)
+|+.|...++++.++ ++. .+..++....-++....| ..-+.+++ +.|++|. ...|+...++++.|.+.|++.+
T Consensus 5 ~G~yGeR~~~~i~~~~~~~~~v~~~~~p~~l~efId~p-ee~Lp~i~---~~Dl~I~y~lHPDl~~~l~~~~~e~g~kav 80 (217)
T PF02593_consen 5 DGKYGERVIENIKNYFDFCRSVIVYEIPEDLPEFIDDP-EEYLPKIP---EADLLIAYGLHPDLTYELPEIAKEAGVKAV 80 (217)
T ss_pred eCcchHHHHHHHHhcCCCCceEEEEeCCccccccccCh-HHHccCCC---CCCEEEEeccCchhHHHHHHHHHHcCCCEE
Confidence 377899999999886 555 333444322111211111 11122333 5899996 6699999999999999999997
Q ss_pred EEecCCCCh-hHHHHHHHHHhccCCcEEEccCCCCcccC
Q 020101 128 VCITEGIPQ-HDMVRVKAALNNQSKTRLVGPNCPGVIKP 165 (331)
Q Consensus 128 vi~t~G~~e-~~~~~l~~~a~~~~gi~viGPnc~Gi~~p 165 (331)
|+ ....+. .-..++.+.+ ++.|+.+.-|.-+--+.+
T Consensus 81 Iv-p~~~~~~g~~~~lk~~~-e~~gi~~~~P~~~CsL~~ 117 (217)
T PF02593_consen 81 IV-PSESPKPGLRRQLKKQL-EEFGIEVEFPKPFCSLEE 117 (217)
T ss_pred EE-ecCCCccchHHHHHHHH-HhcCceeecCccccccCC
Confidence 65 333333 2234566666 789999999986654444
No 237
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=92.97 E-value=0.66 Score=50.47 Aligned_cols=119 Identities=14% Similarity=0.097 Sum_probs=70.7
Q ss_pred CCCCeEEEEEcCCCCCCcHHHHHHHH--------cCC--eEEEEeCCCCCCceecCcc------------cccCHHHh--
Q 020101 39 VDKNTRVICQGITGKNGTFHTEQAIE--------YGT--KMVGGVTPKKGGTEHLGLP------------VFNTVAEA-- 94 (331)
Q Consensus 39 ~~k~~~VaIvGasgk~G~~~~~~l~~--------~g~--~iv~~VnP~~~g~~i~G~p------------~y~sl~dl-- 94 (331)
..+.++|+|+|. |+.|+.+++.+.+ +|. ++++..|-+..--...|+. ...+++.+
T Consensus 455 ~~~~i~i~l~G~-G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~e 533 (810)
T PRK09466 455 AEKRIGLVLFGK-GNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFDDEAVEWDEESLFL 533 (810)
T ss_pred cCceEEEEEEec-CCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHHhhcCCccHHHHHH
Confidence 557899999999 9999988765432 354 4666555332100011111 11122222
Q ss_pred -hhcC--CCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCC----ChhHHHHHHHHHhccCCcEEEccCCCC
Q 020101 95 -KAET--KANASAIYVPPPFAAAAILEAMEAELDLVVCITEGI----PQHDMVRVKAALNNQSKTRLVGPNCPG 161 (331)
Q Consensus 95 -~~~~--~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~----~e~~~~~l~~~a~~~~gi~viGPnc~G 161 (331)
.... ..+++|.+++.+.......+++++|++. | -+..- +.+...+|.+.+ +++|..+.=--+.|
T Consensus 534 ~i~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~V-V-taNK~~~a~~~~~~~~l~~~a-~~~~~~~~yEasV~ 604 (810)
T PRK09466 534 WLRAHPYDELVVLDVTASEQLALQYPDFASHGFHV-I-SANKLAGSSPSNFYRQIKDAF-AKTGRHWLYNATVG 604 (810)
T ss_pred HHhhcCCCCcEEEECCCChHHHHHHHHHHHcCCEE-E-cCCcccccccHHHHHHHHHHH-HHcCCeEEEeceee
Confidence 2111 2369999999988888888999999986 2 22221 224556777777 78887766333333
No 238
>PRK09414 glutamate dehydrogenase; Provisional
Probab=92.90 E-value=0.62 Score=47.17 Aligned_cols=112 Identities=11% Similarity=0.114 Sum_probs=66.0
Q ss_pred CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC-------CCCCC-ceec--------Cccccc--------CHHHhh
Q 020101 40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-------PKKGG-TEHL--------GLPVFN--------TVAEAK 95 (331)
Q Consensus 40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn-------P~~~g-~~i~--------G~p~y~--------sl~dl~ 95 (331)
.+..+|+|.|. |+.|+..++.|.+.|.++++.-| |+..- +++. .+.-|+ +-+++.
T Consensus 230 l~g~rVaIqGf-GnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~i~ 308 (445)
T PRK09414 230 FEGKRVVVSGS-GNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGSPW 308 (445)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcccc
Confidence 46788999999 99999999999999999986534 43210 0000 111121 222222
Q ss_pred hcCCCCEEEEecChh-hHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccC
Q 020101 96 AETKANASAIYVPPP-FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN 158 (331)
Q Consensus 96 ~~~~iDlaii~vp~~-~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPn 158 (331)
+.++|+++=|.... ...+.+....+.+.|.|+=.+-|....+..++ . +++||.++ |+
T Consensus 309 -~~d~DVliPaAl~n~It~~~a~~i~~~~akiIvEgAN~p~t~~A~~~---L-~~rGI~~v-PD 366 (445)
T PRK09414 309 -SVPCDIALPCATQNELDEEDAKTLIANGVKAVAEGANMPSTPEAIEV---F-LEAGVLFA-PG 366 (445)
T ss_pred -ccCCcEEEecCCcCcCCHHHHHHHHHcCCeEEEcCCCCCCCHHHHHH---H-HHCCcEEE-Cc
Confidence 24689998776543 34556666666688875533334332223222 2 56787776 65
No 239
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=92.89 E-value=0.26 Score=42.28 Aligned_cols=53 Identities=19% Similarity=0.329 Sum_probs=42.1
Q ss_pred HHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC-CCCCEEEEEeCCCC
Q 020101 223 FVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG-TEKPIVAFIAGLTA 275 (331)
Q Consensus 223 ~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r-~~KPVvv~k~Grs~ 275 (331)
+.+.|+.+.+|++++.|++++.+.|.....+.++.++++ .+|||+++--|...
T Consensus 16 l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~~~i~~~l~~~~kpvva~~~g~~~ 69 (161)
T cd00394 16 LAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQASRKPVIAYVGGQAA 69 (161)
T ss_pred HHHHHHHHHhCCCCceEEEEEECCCcCHHHHHHHHHHHHHhCCCEEEEECChhH
Confidence 566777888999999999999987655667777777775 56999999887644
No 240
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=92.87 E-value=0.33 Score=40.81 Aligned_cols=114 Identities=16% Similarity=0.153 Sum_probs=62.9
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceec-----------CcccccCHHHhhhcCCCCEEEEecChhhH
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHL-----------GLPVFNTVAEAKAETKANASAIYVPPPFA 112 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~-----------G~p~y~sl~dl~~~~~iDlaii~vp~~~~ 112 (331)
+|+|+|+ |.+|..++++|...|..-+..+|+.....+.. |.+--..+.+...+.++++-+-..+....
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence 4789999 99999999999999986344888875422211 22211122222223344444443333322
Q ss_pred HHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCc
Q 020101 113 AAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGV 162 (331)
Q Consensus 113 ~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi 162 (331)
.....+.. .+...++ .+.. +.+....+.+.+ +++++.++...+.|+
T Consensus 80 ~~~~~~~~-~~~diVi-~~~d-~~~~~~~l~~~~-~~~~i~~i~~~~~g~ 125 (143)
T cd01483 80 EDNLDDFL-DGVDLVI-DAID-NIAVRRALNRAC-KELGIPVIDAGGLGL 125 (143)
T ss_pred hhhHHHHh-cCCCEEE-ECCC-CHHHHHHHHHHH-HHcCCCEEEEcCCCc
Confidence 22222222 3556544 3333 234445566777 788888887776653
No 241
>PLN02240 UDP-glucose 4-epimerase
Probab=92.86 E-value=0.68 Score=44.25 Aligned_cols=91 Identities=14% Similarity=0.058 Sum_probs=54.7
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc-------e-----ecCcccc-------cCHHHhhhcCCCCE
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-------E-----HLGLPVF-------NTVAEAKAETKANA 102 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~-------~-----i~G~p~y-------~sl~dl~~~~~iDl 102 (331)
+.+|+|.|++|-+|+.+++.|.+.|+++++..+...... . ..++..+ .+++++.++.++|.
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~d~ 84 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTRFDA 84 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCCCCE
Confidence 356889999999999999999999998774322111000 0 0011111 23444443336899
Q ss_pred EEEecCh------------------hhHHHHHHHHHHcCCcEEEEecC
Q 020101 103 SAIYVPP------------------PFAAAAILEAMEAELDLVVCITE 132 (331)
Q Consensus 103 aii~vp~------------------~~~~~~v~~~~~~Gi~~ivi~t~ 132 (331)
++.+... .....+++.|.+.+++.++.+++
T Consensus 85 vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 132 (352)
T PLN02240 85 VIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSS 132 (352)
T ss_pred EEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 8876531 12335667777788887676554
No 242
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=92.77 E-value=0.36 Score=45.26 Aligned_cols=112 Identities=13% Similarity=0.101 Sum_probs=63.3
Q ss_pred CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEe-------CCCCCC-ce--------------ecCcc-ccc-----CH
Q 020101 40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGV-------TPKKGG-TE--------------HLGLP-VFN-----TV 91 (331)
Q Consensus 40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~V-------nP~~~g-~~--------------i~G~p-~y~-----sl 91 (331)
.+..+|+|.|. |+.|+..++.|.+.|.++++.- ||..-- ++ +.+.+ -|+ +-
T Consensus 36 l~g~~vaIqGf-GnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~ 114 (254)
T cd05313 36 LKGKRVAISGS-GNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEG 114 (254)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCC
Confidence 35678999999 9999999999999999998653 443210 00 01110 011 22
Q ss_pred HHhhhcCCCCEEEEec-ChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccC
Q 020101 92 AEAKAETKANASAIYV-PPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN 158 (331)
Q Consensus 92 ~dl~~~~~iDlaii~v-p~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPn 158 (331)
+++.. .++|+.+-|- ......+.+....+.+.+.|+=.+-|....+..+ .. +++|+.++ |+
T Consensus 115 ~~~~~-~~~DIliPcAl~~~I~~~na~~i~~~~ak~I~EgAN~p~t~~a~~---~L-~~rGI~vv-PD 176 (254)
T cd05313 115 KKPWE-VPCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGANMPCTAEAIE---VF-RQAGVLFA-PG 176 (254)
T ss_pred cchhc-CCCcEEEeccccccCCHHHHHHHHHcCCEEEEeCCCCCCCHHHHH---HH-HHCCcEEE-Cc
Confidence 23332 3678877443 2333455666666668887553333322223222 22 56787776 65
No 243
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=92.71 E-value=0.73 Score=43.81 Aligned_cols=29 Identities=28% Similarity=0.335 Sum_probs=25.7
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEE
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGG 72 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~ 72 (331)
+|+|.|++|-.|+.+++.|.+.|++++..
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~ 30 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQNGHDVVIL 30 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHCCCeEEEE
Confidence 68899999999999999999999997743
No 244
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=92.69 E-value=0.76 Score=43.12 Aligned_cols=86 Identities=20% Similarity=0.175 Sum_probs=54.2
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC-CCCCCcee--cCccc-------ccCHHHhhhcCCCCEEEEecCh----
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGTEH--LGLPV-------FNTVAEAKAETKANASAIYVPP---- 109 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn-P~~~g~~i--~G~p~-------y~sl~dl~~~~~iDlaii~vp~---- 109 (331)
+|.|.|++|-+|+.+++.|.+.|+++++... +... ... .++.. ..+++++.+ .+|+++.+...
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~D~~~~~~l~~~~~--~~d~vi~~a~~~~~~ 78 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDR-RNLEGLDVEIVEGDLRDPASLRKAVA--GCRALFHVAADYRLW 78 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCCEEEEEEecCccc-cccccCCceEEEeeCCCHHHHHHHHh--CCCEEEEeceecccC
Confidence 5789999999999999999999998774432 2210 111 12221 123455554 68988866531
Q ss_pred ------------hhHHHHHHHHHHcCCcEEEEecC
Q 020101 110 ------------PFAAAAILEAMEAELDLVVCITE 132 (331)
Q Consensus 110 ------------~~~~~~v~~~~~~Gi~~ivi~t~ 132 (331)
.....+++.|.+.+++.++..++
T Consensus 79 ~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS 113 (328)
T TIGR03466 79 APDPEEMYAANVEGTRNLLRAALEAGVERVVYTSS 113 (328)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 11244567777888888776665
No 245
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=92.69 E-value=0.51 Score=43.99 Aligned_cols=81 Identities=17% Similarity=0.117 Sum_probs=55.8
Q ss_pred EEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecC-----------hh-----
Q 020101 47 CQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVP-----------PP----- 110 (331)
Q Consensus 47 IvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp-----------~~----- 110 (331)
|.|++|-+|+.+++.|.+.|++++...+. . ...+.-+.+++++.+..++|++|-+.. +.
T Consensus 2 ItGa~GfiG~~l~~~L~~~g~~v~~~~~~-~----~~Dl~~~~~l~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~ 76 (306)
T PLN02725 2 VAGHRGLVGSAIVRKLEALGFTNLVLRTH-K----ELDLTRQADVEAFFAKEKPTYVILAAAKVGGIHANMTYPADFIRE 76 (306)
T ss_pred cccCCCcccHHHHHHHHhCCCcEEEeecc-c----cCCCCCHHHHHHHHhccCCCEEEEeeeeecccchhhhCcHHHHHH
Confidence 68999999999999999999886633322 2 123344556777766556899886641 11
Q ss_pred ---hHHHHHHHHHHcCCcEEEEecC
Q 020101 111 ---FAAAAILEAMEAELDLVVCITE 132 (331)
Q Consensus 111 ---~~~~~v~~~~~~Gi~~ivi~t~ 132 (331)
....+++.|.+.+++.+|.+++
T Consensus 77 n~~~~~~ll~~~~~~~~~~~i~~SS 101 (306)
T PLN02725 77 NLQIQTNVIDAAYRHGVKKLLFLGS 101 (306)
T ss_pred HhHHHHHHHHHHHHcCCCeEEEeCc
Confidence 1445788888899987776665
No 246
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=92.63 E-value=0.7 Score=41.48 Aligned_cols=119 Identities=19% Similarity=0.220 Sum_probs=67.0
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcc-ccc------------CHHHhhhcCCCCEEEEec
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLP-VFN------------TVAEAKAETKANASAIYV 107 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p-~y~------------sl~dl~~~~~iDlaii~v 107 (331)
++.+|.|+|+ |..|..++++|...|..-+..+|......+..+.. .|. .+.+-..+.+||+-+...
T Consensus 18 ~~s~VlviG~-gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~ 96 (198)
T cd01485 18 RSAKVLIIGA-GALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIV 96 (198)
T ss_pred hhCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEE
Confidence 3466889999 55999999999999986444777765322222211 111 112223333566655444
Q ss_pred Chhh--HHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCccc
Q 020101 108 PPPF--AAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIK 164 (331)
Q Consensus 108 p~~~--~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~ 164 (331)
.... ..+...+..+ ....++ .+.. +.+....+.+.| +++++.++-..|.|+.-
T Consensus 97 ~~~~~~~~~~~~~~~~-~~dvVi-~~~d-~~~~~~~ln~~c-~~~~ip~i~~~~~G~~G 151 (198)
T cd01485 97 EEDSLSNDSNIEEYLQ-KFTLVI-ATEE-NYERTAKVNDVC-RKHHIPFISCATYGLIG 151 (198)
T ss_pred ecccccchhhHHHHHh-CCCEEE-ECCC-CHHHHHHHHHHH-HHcCCCEEEEEeecCEE
Confidence 3222 1233333332 456544 3433 344445566777 78899988777776654
No 247
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=92.62 E-value=0.49 Score=43.62 Aligned_cols=85 Identities=21% Similarity=0.172 Sum_probs=50.5
Q ss_pred EEEEcCCCCCCcHHHHHHHHcCCeEEEEeC-CCCCCcee--cCcccc--cCHHHhhhcCCCCEEEEecChh---------
Q 020101 45 VICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGTEH--LGLPVF--NTVAEAKAETKANASAIYVPPP--------- 110 (331)
Q Consensus 45 VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn-P~~~g~~i--~G~p~y--~sl~dl~~~~~iDlaii~vp~~--------- 110 (331)
|.|.|++|-.|+.+++.|.+.|+++++... +... +.. .++..+ ....+... ++|.++-+....
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~D~Vvh~a~~~~~~~~~~~~ 77 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAG-ANTKWEGYKPWAPLAESEALE--GADAVINLAGEPIADKRWTEE 77 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCC-CcccceeeecccccchhhhcC--CCCEEEECCCCCcccccCCHH
Confidence 468999999999999999999999874432 2211 111 111111 12223333 689988766321
Q ss_pred -----------hHHHHHHHHHHcCCc-EEEEecC
Q 020101 111 -----------FAAAAILEAMEAELD-LVVCITE 132 (331)
Q Consensus 111 -----------~~~~~v~~~~~~Gi~-~ivi~t~ 132 (331)
.+..+++.|.+.|++ .+++.++
T Consensus 78 ~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S 111 (292)
T TIGR01777 78 RKQEIRDSRIDTTRALVEAIAAAEQKPKVFISAS 111 (292)
T ss_pred HHHHHHhcccHHHHHHHHHHHhcCCCceEEEEee
Confidence 145666777788874 4454443
No 248
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=92.59 E-value=0.36 Score=43.70 Aligned_cols=35 Identities=11% Similarity=0.170 Sum_probs=29.5
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 77 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~ 77 (331)
+..+|+|||+ |+.|..-++.|.+.|.+++ .|+|+.
T Consensus 8 ~gk~vlVvGg-G~va~rk~~~Ll~~ga~Vt-Vvsp~~ 42 (205)
T TIGR01470 8 EGRAVLVVGG-GDVALRKARLLLKAGAQLR-VIAEEL 42 (205)
T ss_pred CCCeEEEECc-CHHHHHHHHHHHHCCCEEE-EEcCCC
Confidence 4568899999 8888888889999998877 888865
No 249
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=92.58 E-value=0.48 Score=42.60 Aligned_cols=116 Identities=16% Similarity=0.122 Sum_probs=60.4
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCccc-c----------cCHHHhhhcCCCCEEEEecCh
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPV-F----------NTVAEAKAETKANASAIYVPP 109 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~-y----------~sl~dl~~~~~iDlaii~vp~ 109 (331)
+..+|+|+|+ |.+|..++++|...|..-+..+|+.....+..+... | ..+.+-..+.++++-+...+.
T Consensus 20 ~~~~VlviG~-GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 98 (202)
T TIGR02356 20 LNSHVLIIGA-GGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKE 98 (202)
T ss_pred cCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehh
Confidence 4566889999 889999999999999853338888753222122111 1 112222222345555544443
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCC
Q 020101 110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG 161 (331)
Q Consensus 110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~G 161 (331)
....+.+++.. .+...++. +..- .+....+.+.+ +++++.++-..+.|
T Consensus 99 ~i~~~~~~~~~-~~~D~Vi~-~~d~-~~~r~~l~~~~-~~~~ip~i~~~~~g 146 (202)
T TIGR02356 99 RVTAENLELLI-NNVDLVLD-CTDN-FATRYLINDAC-VALGTPLISAAVVG 146 (202)
T ss_pred cCCHHHHHHHH-hCCCEEEE-CCCC-HHHHHHHHHHH-HHcCCCEEEEEecc
Confidence 33333344443 35565443 3321 22223344555 66777665544433
No 250
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=92.56 E-value=0.93 Score=44.20 Aligned_cols=105 Identities=17% Similarity=0.138 Sum_probs=62.1
Q ss_pred CCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEE-eCCCCCCceecCccc---ccCHHHhhhcCCCCEEEEecChhh-HH
Q 020101 39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGG-VTPKKGGTEHLGLPV---FNTVAEAKAETKANASAIYVPPPF-AA 113 (331)
Q Consensus 39 ~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~-VnP~~~g~~i~G~p~---y~sl~dl~~~~~iDlaii~vp~~~-~~ 113 (331)
.++..+|.|+|. |++|+.+++.|..+|..+.|- -++.. .++ -... +-+++++.. +-|+++++.|-.. ..
T Consensus 159 ~~~gK~vgilG~-G~IG~~ia~rL~~Fg~~i~y~~r~~~~--~~~-~~~~~~~~~d~~~~~~--~sD~ivv~~pLt~~T~ 232 (336)
T KOG0069|consen 159 DLEGKTVGILGL-GRIGKAIAKRLKPFGCVILYHSRTQLP--PEE-AYEYYAEFVDIEELLA--NSDVIVVNCPLTKETR 232 (336)
T ss_pred cccCCEEEEecC-cHHHHHHHHhhhhccceeeeecccCCc--hhh-HHHhcccccCHHHHHh--hCCEEEEecCCCHHHH
Confidence 556788999999 999999999999988445432 22221 111 1123 448889887 7899999998643 33
Q ss_pred HHH--HHHHHcCCcEEEE-ecCCCChhHHHHHHHHHhccCC
Q 020101 114 AAI--LEAMEAELDLVVC-ITEGIPQHDMVRVKAALNNQSK 151 (331)
Q Consensus 114 ~~v--~~~~~~Gi~~ivi-~t~G~~e~~~~~l~~~a~~~~g 151 (331)
.++ +.+...+...+++ .+-|- --+.+.+.+.. ++..
T Consensus 233 ~liNk~~~~~mk~g~vlVN~aRG~-iide~~l~eaL-~sG~ 271 (336)
T KOG0069|consen 233 HLINKKFIEKMKDGAVLVNTARGA-IIDEEALVEAL-KSGK 271 (336)
T ss_pred HHhhHHHHHhcCCCeEEEeccccc-cccHHHHHHHH-hcCC
Confidence 333 3344455554333 22232 12333455555 4444
No 251
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=92.35 E-value=0.11 Score=43.73 Aligned_cols=81 Identities=17% Similarity=0.160 Sum_probs=53.0
Q ss_pred CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce---ec-C----cccccCHHHhhhcCCCCEEEEecChh
Q 020101 40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HL-G----LPVFNTVAEAKAETKANASAIYVPPP 110 (331)
Q Consensus 40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~---i~-G----~p~y~sl~dl~~~~~iDlaii~vp~~ 110 (331)
-+..+|+|+|+ |.+++.++..|.+.|++-+..+|.+... ++ .. + .--|.++.+... +.|++|-+||..
T Consensus 10 l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~--~~DivI~aT~~~ 86 (135)
T PF01488_consen 10 LKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQ--EADIVINATPSG 86 (135)
T ss_dssp GTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHH--TESEEEE-SSTT
T ss_pred cCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHh--hCCeEEEecCCC
Confidence 35678899999 9999999999999999845589987521 11 11 1 113344555555 789999999876
Q ss_pred hHHHHHHHHHHcCC
Q 020101 111 FAAAAILEAMEAEL 124 (331)
Q Consensus 111 ~~~~~v~~~~~~Gi 124 (331)
.. .+-++.++...
T Consensus 87 ~~-~i~~~~~~~~~ 99 (135)
T PF01488_consen 87 MP-IITEEMLKKAS 99 (135)
T ss_dssp ST-SSTHHHHTTTC
T ss_pred Cc-ccCHHHHHHHH
Confidence 54 33344455443
No 252
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=92.34 E-value=0.83 Score=42.63 Aligned_cols=88 Identities=13% Similarity=0.149 Sum_probs=53.0
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC-CCCC-Cc---eec---Ccccc-------cCHHHhhhcCCCCEEEEecC
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKG-GT---EHL---GLPVF-------NTVAEAKAETKANASAIYVP 108 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn-P~~~-g~---~i~---G~p~y-------~sl~dl~~~~~iDlaii~vp 108 (331)
+|+|.|++|.+|+.+++.|.+.|++++ .++ +... .. ... ++..+ .+++++....++|.++.+..
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~~ag 79 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVV-VLDNLSNGSPEALKRGERITRVTFVEGDLRDRELLDRLFEEHKIDAVIHFAG 79 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEE-EEeCCCccchhhhhhhccccceEEEECCCCCHHHHHHHHHhCCCcEEEECcc
Confidence 478899999999999999999999876 443 1110 00 010 11111 12444443336899886653
Q ss_pred h------------------hhHHHHHHHHHHcCCcEEEEecC
Q 020101 109 P------------------PFAAAAILEAMEAELDLVVCITE 132 (331)
Q Consensus 109 ~------------------~~~~~~v~~~~~~Gi~~ivi~t~ 132 (331)
. .....+++.|.+.+++.++.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ss 121 (328)
T TIGR01179 80 LIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFSSS 121 (328)
T ss_pred ccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEecc
Confidence 2 12345566777788877776554
No 253
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=92.34 E-value=0.27 Score=50.58 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=48.4
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc-e-------------ecC-------------cccccCHHH
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-E-------------HLG-------------LPVFNTVAE 93 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~-~-------------i~G-------------~p~y~sl~d 93 (331)
+-.+|+|||+ |.||..+..++...|++++ ..|++...- . -.| +..-.++++
T Consensus 6 ~i~~V~VIGa-G~MG~gIA~~la~aG~~V~-l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~ 83 (507)
T PRK08268 6 SIATVAVIGA-GAMGAGIAQVAAQAGHTVL-LYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD 83 (507)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence 3456899999 9999999999999999876 666554100 0 012 344456766
Q ss_pred hhhcCCCCEEEEecChhhHHH
Q 020101 94 AKAETKANASAIYVPPPFAAA 114 (331)
Q Consensus 94 l~~~~~iDlaii~vp~~~~~~ 114 (331)
+. +.|++|-++|.+...+
T Consensus 84 ~~---~aDlViEav~E~~~vK 101 (507)
T PRK08268 84 LA---DCDLVVEAIVERLDVK 101 (507)
T ss_pred hC---CCCEEEEcCcccHHHH
Confidence 53 6899999999876544
No 254
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=92.33 E-value=0.83 Score=42.33 Aligned_cols=115 Identities=17% Similarity=0.156 Sum_probs=62.3
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccC-----------HHHhhhcCCCCEEEEecCh
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNT-----------VAEAKAETKANASAIYVPP 109 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~s-----------l~dl~~~~~iDlaii~vp~ 109 (331)
+..+|+|+|+ |-.|..++++|...|..-+..||+.....+..+...|-+ ..+...+.++++-|...+.
T Consensus 23 ~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~ 101 (240)
T TIGR02355 23 KASRVLIVGL-GGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINA 101 (240)
T ss_pred hCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence 3467899999 889999999999998764448888764332223222221 1222222345555555543
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCC
Q 020101 110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCP 160 (331)
Q Consensus 110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~ 160 (331)
....+.+.+.++ +...++..+.. .+....+.+.| +++++.++-....
T Consensus 102 ~i~~~~~~~~~~-~~DlVvd~~D~--~~~r~~ln~~~-~~~~ip~v~~~~~ 148 (240)
T TIGR02355 102 KLDDAELAALIA-EHDIVVDCTDN--VEVRNQLNRQC-FAAKVPLVSGAAI 148 (240)
T ss_pred cCCHHHHHHHhh-cCCEEEEcCCC--HHHHHHHHHHH-HHcCCCEEEEEec
Confidence 333333444332 45654432222 22233445555 6777776654433
No 255
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=92.31 E-value=0.32 Score=39.70 Aligned_cols=97 Identities=16% Similarity=0.144 Sum_probs=55.5
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecCh------hhHHHHH
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP------PFAAAAI 116 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~------~~~~~~v 116 (331)
.||.|+|- |-....+++.+++.|++.+ .||.+. +.. -. +.. ..|-++.--|. -....++
T Consensus 3 kkvLIanr-Geia~r~~ra~r~~Gi~tv-~v~s~~--d~~-----s~---~~~---~ad~~~~~~~~~~~~~yl~~e~I~ 67 (110)
T PF00289_consen 3 KKVLIANR-GEIAVRIIRALRELGIETV-AVNSNP--DTV-----ST---HVD---MADEAYFEPPGPSPESYLNIEAII 67 (110)
T ss_dssp SEEEESS--HHHHHHHHHHHHHTTSEEE-EEEEGG--GTT-----GH---HHH---HSSEEEEEESSSGGGTTTSHHHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHHhCCcce-eccCch--hcc-----cc---ccc---ccccceecCcchhhhhhccHHHHh
Confidence 46777776 6666777888999999977 555443 111 01 111 13444322111 3456667
Q ss_pred HHHHHcCCcEEEEecCCCC-hhHHHHHHHHHhccCCcEEEccC
Q 020101 117 LEAMEAELDLVVCITEGIP-QHDMVRVKAALNNQSKTRLVGPN 158 (331)
Q Consensus 117 ~~~~~~Gi~~ivi~t~G~~-e~~~~~l~~~a~~~~gi~viGPn 158 (331)
+-+.+.|+..++ +|+. -.+..++.+.+ +++|+.++||+
T Consensus 68 ~ia~~~g~~~i~---pGyg~lse~~~fa~~~-~~~gi~fiGp~ 106 (110)
T PF00289_consen 68 DIARKEGADAIH---PGYGFLSENAEFAEAC-EDAGIIFIGPS 106 (110)
T ss_dssp HHHHHTTESEEE---STSSTTTTHHHHHHHH-HHTT-EESSS-
T ss_pred hHhhhhcCcccc---cccchhHHHHHHHHHH-HHCCCEEECcC
Confidence 777777888755 4432 12333566666 68999999997
No 256
>PRK08328 hypothetical protein; Provisional
Probab=92.24 E-value=0.74 Score=42.36 Aligned_cols=118 Identities=12% Similarity=0.101 Sum_probs=67.2
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHH------------hhhcCCCCEEEEecC
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAE------------AKAETKANASAIYVP 108 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~d------------l~~~~~iDlaii~vp 108 (331)
+..+|+|+|+ |-.|..++++|...|..-+..||+.....+..+...+.+-++ -..+.++|+-|...+
T Consensus 26 ~~~~VlIiG~-GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~ 104 (231)
T PRK08328 26 KKAKVAVVGV-GGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFV 104 (231)
T ss_pred hCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEe
Confidence 3456889999 889999999999999864448887764222222222211111 112235677666544
Q ss_pred hhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcc
Q 020101 109 PPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVI 163 (331)
Q Consensus 109 ~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~ 163 (331)
.....+.+++.. .+...|+..+..+ +....+.+.| +++++.++.-.+.|+.
T Consensus 105 ~~~~~~~~~~~l-~~~D~Vid~~d~~--~~r~~l~~~~-~~~~ip~i~g~~~g~~ 155 (231)
T PRK08328 105 GRLSEENIDEVL-KGVDVIVDCLDNF--ETRYLLDDYA-HKKGIPLVHGAVEGTY 155 (231)
T ss_pred ccCCHHHHHHHH-hcCCEEEECCCCH--HHHHHHHHHH-HHcCCCEEEEeeccCE
Confidence 433334444444 3567655433332 2223344556 7888888866665543
No 257
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=92.20 E-value=0.14 Score=40.92 Aligned_cols=81 Identities=19% Similarity=0.134 Sum_probs=47.9
Q ss_pred CCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC--CCce-ecCcccccCHHHhhhcCCCCEEEEecChhhH-HH
Q 020101 39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK--GGTE-HLGLPVFNTVAEAKAETKANASAIYVPPPFA-AA 114 (331)
Q Consensus 39 ~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~--~g~~-i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~-~~ 114 (331)
.-+..+|+|||. |+.+..-++.|.+.|.++. .+.|.. ..+. .+-...|+ ++ .+ +.|+++.+++.... ..
T Consensus 4 ~l~~~~vlVvGg-G~va~~k~~~Ll~~gA~v~-vis~~~~~~~~~i~~~~~~~~--~~-l~--~~~lV~~at~d~~~n~~ 76 (103)
T PF13241_consen 4 DLKGKRVLVVGG-GPVAARKARLLLEAGAKVT-VISPEIEFSEGLIQLIRREFE--ED-LD--GADLVFAATDDPELNEA 76 (103)
T ss_dssp --TT-EEEEEEE-SHHHHHHHHHHCCCTBEEE-EEESSEHHHHTSCEEEESS-G--GG-CT--TESEEEE-SS-HHHHHH
T ss_pred EcCCCEEEEECC-CHHHHHHHHHHHhCCCEEE-EECCchhhhhhHHHHHhhhHH--HH-Hh--hheEEEecCCCHHHHHH
Confidence 456788999999 8888877888888898876 777762 0011 11112231 23 33 57999999966554 44
Q ss_pred HHHHHHHcCCcE
Q 020101 115 AILEAMEAELDL 126 (331)
Q Consensus 115 ~v~~~~~~Gi~~ 126 (331)
+.++|-++|+..
T Consensus 77 i~~~a~~~~i~v 88 (103)
T PF13241_consen 77 IYADARARGILV 88 (103)
T ss_dssp HHHHHHHTTSEE
T ss_pred HHHHHhhCCEEE
Confidence 556666677654
No 258
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.17 E-value=0.27 Score=49.25 Aligned_cols=78 Identities=15% Similarity=0.134 Sum_probs=50.9
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEe--CCCCCC-ceecCcccccCHHHhhhcCCCCEEEEecChhhHHHH-HH
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGV--TPKKGG-TEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA-IL 117 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~V--nP~~~g-~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~-v~ 117 (331)
..+|+|+|+ |.+|..+++.++..|.+++ .+ ||.... ..-.|..+. ++++... ..|+++.++....+... .-
T Consensus 202 GktVvViG~-G~IG~~va~~ak~~Ga~Vi-V~d~d~~R~~~A~~~G~~~~-~~~e~v~--~aDVVI~atG~~~~i~~~~l 276 (413)
T cd00401 202 GKVAVVAGY-GDVGKGCAQSLRGQGARVI-VTEVDPICALQAAMEGYEVM-TMEEAVK--EGDIFVTTTGNKDIITGEHF 276 (413)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEECChhhHHHHHhcCCEEc-cHHHHHc--CCCEEEECCCCHHHHHHHHH
Confidence 556889999 9999999999999999865 45 443310 013465433 3556555 68999999876554442 24
Q ss_pred HHHHcCC
Q 020101 118 EAMEAEL 124 (331)
Q Consensus 118 ~~~~~Gi 124 (331)
++.+.|.
T Consensus 277 ~~mk~Gg 283 (413)
T cd00401 277 EQMKDGA 283 (413)
T ss_pred hcCCCCc
Confidence 4445544
No 259
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=92.10 E-value=0.51 Score=41.97 Aligned_cols=87 Identities=23% Similarity=0.275 Sum_probs=47.1
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCcee-------------------------cCcccccCHHHhhhc
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH-------------------------LGLPVFNTVAEAKAE 97 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i-------------------------~G~p~y~sl~dl~~~ 97 (331)
++|+|+|. |..|-..+-.|.+.|++++ ++|.+. +.+ ..+....+.++...
T Consensus 1 M~I~ViGl-GyvGl~~A~~lA~~G~~V~-g~D~~~--~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~- 75 (185)
T PF03721_consen 1 MKIAVIGL-GYVGLPLAAALAEKGHQVI-GVDIDE--EKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIK- 75 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTSEEE-EE-S-H--HHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHH-
T ss_pred CEEEEECC-CcchHHHHHHHHhCCCEEE-EEeCCh--HHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhh-
Confidence 47899999 8888888888889999988 655543 111 11233345666555
Q ss_pred CCCCEEEEecChhh----------HHHHHHHHHHcC-CcEEEEecCCCC
Q 020101 98 TKANASAIYVPPPF----------AAAAILEAMEAE-LDLVVCITEGIP 135 (331)
Q Consensus 98 ~~iDlaii~vp~~~----------~~~~v~~~~~~G-i~~ivi~t~G~~ 135 (331)
+.|++++|+|... +..+++...+.- -..++++-+-++
T Consensus 76 -~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvp 123 (185)
T PF03721_consen 76 -DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVP 123 (185)
T ss_dssp -H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSS
T ss_pred -ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEE
Confidence 6899999998542 445555544422 234555555443
No 260
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=91.99 E-value=0.49 Score=47.12 Aligned_cols=88 Identities=13% Similarity=0.001 Sum_probs=62.5
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHc---CCeEEEEeCC-----------CCC--------------Cce--ecCc--cccc-
Q 020101 43 TRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTP-----------KKG--------------GTE--HLGL--PVFN- 89 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~---g~~iv~~VnP-----------~~~--------------g~~--i~G~--p~y~- 89 (331)
++|+|.|+ |++|+.+++.+.+. ..+++ .||. +++ |+. +.|. +++.
T Consensus 61 ~kVaInGf-GrIGR~vlr~l~~~~~~~~evv-aINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v~~~ 138 (395)
T PLN03096 61 IKVAINGF-GRIGRNFLRCWHGRKDSPLDVV-AINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKVVSD 138 (395)
T ss_pred cEEEEECc-CHHHHHHHHHHHhCCCCCeEEE-EEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEEEEc
Confidence 68999999 99999999988765 34676 4443 111 111 2232 3332
Q ss_pred -CHHHhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 020101 90 -TVAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE 132 (331)
Q Consensus 90 -sl~dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~ 132 (331)
++++++= +.++|+++.++......+.+...+++|.+.|++-++
T Consensus 139 ~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap 183 (395)
T PLN03096 139 RNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 183 (395)
T ss_pred CCcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCC
Confidence 3666653 248999999999999999999999999998665333
No 261
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=91.95 E-value=0.35 Score=49.75 Aligned_cols=65 Identities=14% Similarity=0.081 Sum_probs=45.0
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce--------------ecC-------------cccccCHHHhh
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--------------HLG-------------LPVFNTVAEAK 95 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~--------------i~G-------------~p~y~sl~dl~ 95 (331)
.+|+|||+ |.||+.++.++...|++++ .+|.+...-+ -.| +....+++++.
T Consensus 6 ~kV~VIGa-G~MG~gIA~~la~aG~~V~-l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~ 83 (503)
T TIGR02279 6 VTVAVIGA-GAMGAGIAQVAASAGHQVL-LYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA 83 (503)
T ss_pred cEEEEECc-CHHHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC
Confidence 45889999 9999999999999999866 5555431000 012 22345676653
Q ss_pred hcCCCCEEEEecChhhH
Q 020101 96 AETKANASAIYVPPPFA 112 (331)
Q Consensus 96 ~~~~iDlaii~vp~~~~ 112 (331)
+.|++|-++|.+..
T Consensus 84 ---~aDlVIEav~E~~~ 97 (503)
T TIGR02279 84 ---DAGLVIEAIVENLE 97 (503)
T ss_pred ---CCCEEEEcCcCcHH
Confidence 68999999997544
No 262
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.91 E-value=0.74 Score=42.51 Aligned_cols=155 Identities=15% Similarity=0.171 Sum_probs=86.9
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccC-----------HHHhhhcCCCCEEEEecChh
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNT-----------VAEAKAETKANASAIYVPPP 110 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~s-----------l~dl~~~~~iDlaii~vp~~ 110 (331)
..+|+|+|+ |-.|..++++|...|..-+..||+.....+......+.. +.+-..+.+|++-|...+..
T Consensus 11 ~~~VlVvG~-GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~~ 89 (231)
T cd00755 11 NAHVAVVGL-GGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEEF 89 (231)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeeee
Confidence 456889999 889999999999998753337787653222222222221 22223334667777666655
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCC-cccCCCcccccCCCCCCCCCCEEEEecC
Q 020101 111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG-VIKPGECKIGIMPGYIHKPGRIGIVSRS 189 (331)
Q Consensus 111 ~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~G-i~~p~~~~~~~~~~~~~~~G~valisQS 189 (331)
...+...+....+...++. +..- .+....|.++| +++++.+|---..| -.+|.++. |+=|+++
T Consensus 90 i~~~~~~~l~~~~~D~Vvd-aiD~-~~~k~~L~~~c-~~~~ip~I~s~g~g~~~dp~~i~-------------i~di~~t 153 (231)
T cd00755 90 LTPDNSEDLLGGDPDFVVD-AIDS-IRAKVALIAYC-RKRKIPVISSMGAGGKLDPTRIR-------------VADISKT 153 (231)
T ss_pred cCHhHHHHHhcCCCCEEEE-cCCC-HHHHHHHHHHH-HHhCCCEEEEeCCcCCCCCCeEE-------------EccEecc
Confidence 5555666666666776553 3332 22334566777 77888877532222 23333221 3333333
Q ss_pred h--HHHHHHHHHHHhCCC--CceEEEec
Q 020101 190 G--TLTYEAVFQTTAVGL--GQSTCVGI 213 (331)
Q Consensus 190 G--~~~~~~~~~~~~~g~--g~s~~vs~ 213 (331)
- -++..+-..++++|+ |+..+-|+
T Consensus 154 ~~~pla~~~R~~Lrk~~~~~~~~~v~S~ 181 (231)
T cd00755 154 SGDPLARKVRKRLRKRGIFFGVPVVYST 181 (231)
T ss_pred ccCcHHHHHHHHHHHcCCCCCeEEEeCC
Confidence 3 455666677777776 34444454
No 263
>PRK08618 ornithine cyclodeaminase; Validated
Probab=91.90 E-value=0.22 Score=48.14 Aligned_cols=88 Identities=11% Similarity=0.059 Sum_probs=62.4
Q ss_pred CCCCeEEEEEcCCCCCCcHHHHHHHH-cCCeEEEEeCCCCCC-ce-------ecCc--ccccCHHHhhhcCCCCEEEEec
Q 020101 39 VDKNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGG-TE-------HLGL--PVFNTVAEAKAETKANASAIYV 107 (331)
Q Consensus 39 ~~k~~~VaIvGasgk~G~~~~~~l~~-~g~~iv~~VnP~~~g-~~-------i~G~--p~y~sl~dl~~~~~iDlaii~v 107 (331)
.+...+++|+|+ |.+++.++..+.. .+.+.+..+|+.... ++ ..++ ..|.+++++.. +.|+++.+|
T Consensus 124 ~~~~~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~aDiVi~aT 200 (325)
T PRK08618 124 REDAKTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIE--EADIIVTVT 200 (325)
T ss_pred CCCCcEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHh--cCCEEEEcc
Confidence 345677999999 9999988877654 577766688876521 11 1243 35778888876 799999999
Q ss_pred ChhhHHHHHHHHHHcCCcEEEEec
Q 020101 108 PPPFAAAAILEAMEAELDLVVCIT 131 (331)
Q Consensus 108 p~~~~~~~v~~~~~~Gi~~ivi~t 131 (331)
|.. ++-+- ++++.|.+..-+.+
T Consensus 201 ~s~-~p~i~-~~l~~G~hV~~iGs 222 (325)
T PRK08618 201 NAK-TPVFS-EKLKKGVHINAVGS 222 (325)
T ss_pred CCC-CcchH-HhcCCCcEEEecCC
Confidence 976 45455 88899988755533
No 264
>PLN02583 cinnamoyl-CoA reductase
Probab=91.88 E-value=1.2 Score=41.90 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=27.5
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEe
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGV 73 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~V 73 (331)
..+|+|.|++|.+|+.+++.|.+.|+++++.+
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~ 37 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGYTVHAAV 37 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEE
Confidence 44688999999999999999999999987544
No 265
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=91.86 E-value=0.54 Score=44.43 Aligned_cols=84 Identities=17% Similarity=0.126 Sum_probs=52.6
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCcee-cCcccccCHHHhhhcCCCCEEEEecC----------hh--
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH-LGLPVFNTVAEAKAETKANASAIYVP----------PP-- 110 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i-~G~p~y~sl~dl~~~~~iDlaii~vp----------~~-- 110 (331)
+|.|.|++|-+|+.+.+.|.+.| +++ .++... ..+ ..+.-...++++.++.++|++|-+.- ++
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g-~V~-~~~~~~--~~~~~Dl~d~~~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~ 77 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG-NLI-ALDVHS--TDYCGDFSNPEGVAETVRKIRPDVIVNAAAHTAVDKAESEPEFA 77 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC-CEE-Eecccc--ccccCCCCCHHHHHHHHHhcCCCEEEECCccCCcchhhcCHHHH
Confidence 68899999999999999998888 665 444322 111 22333334555555446898885431 11
Q ss_pred ------hHHHHHHHHHHcCCcEEEEecC
Q 020101 111 ------FAAAAILEAMEAELDLVVCITE 132 (331)
Q Consensus 111 ------~~~~~v~~~~~~Gi~~ivi~t~ 132 (331)
....+++.|.+.|++. +.+++
T Consensus 78 ~~~N~~~~~~l~~aa~~~g~~~-v~~Ss 104 (299)
T PRK09987 78 QLLNATSVEAIAKAANEVGAWV-VHYST 104 (299)
T ss_pred HHHHHHHHHHHHHHHHHcCCeE-EEEcc
Confidence 1334667788888864 54555
No 266
>PRK12320 hypothetical protein; Provisional
Probab=91.84 E-value=0.72 Score=49.27 Aligned_cols=86 Identities=17% Similarity=0.157 Sum_probs=55.4
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccc------cCHHHhhhcCCCCEEEEecChh-------
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVF------NTVAEAKAETKANASAIYVPPP------- 110 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y------~sl~dl~~~~~iDlaii~vp~~------- 110 (331)
+|+|.|++|-+|+.+++.|.+.|+++++..+.... ....++..+ +.+.++.. ++|.++-+.+..
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~-~~~~~ve~v~~Dl~d~~l~~al~--~~D~VIHLAa~~~~~~~~v 78 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHD-ALDPRVDYVCASLRNPVLQELAG--EADAVIHLAPVDTSAPGGV 78 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhh-cccCCceEEEccCCCHHHHHHhc--CCCEEEEcCccCccchhhH
Confidence 68899999999999999999999998855442110 000111111 12444444 689999887632
Q ss_pred ---hHHHHHHHHHHcCCcEEEEecCC
Q 020101 111 ---FAAAAILEAMEAELDLVVCITEG 133 (331)
Q Consensus 111 ---~~~~~v~~~~~~Gi~~ivi~t~G 133 (331)
.+..+++.|.+.|++ ++.+++.
T Consensus 79 Nv~Gt~nLleAA~~~GvR-iV~~SS~ 103 (699)
T PRK12320 79 GITGLAHVANAAARAGAR-LLFVSQA 103 (699)
T ss_pred HHHHHHHHHHHHHHcCCe-EEEEECC
Confidence 144567888889987 4545543
No 267
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=91.82 E-value=0.91 Score=41.50 Aligned_cols=114 Identities=19% Similarity=0.136 Sum_probs=59.9
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCccccc-----------CHHHhhhcCCCCEEEEecCh
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFN-----------TVAEAKAETKANASAIYVPP 109 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~-----------sl~dl~~~~~iDlaii~vp~ 109 (331)
++.+|+|+|+ |-.|..++++|...|..-+..||+.....+..+...+- .+.+-..+.++++-+...+.
T Consensus 20 ~~~~VlivG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~ 98 (228)
T cd00757 20 KNARVLVVGA-GGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE 98 (228)
T ss_pred hCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Confidence 3567889999 88999999999999986444787765322222221111 12222223345555555444
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCC
Q 020101 110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNC 159 (331)
Q Consensus 110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc 159 (331)
....+.+.+..+ +...++. +..- .+....+.+.| +++++.++--.+
T Consensus 99 ~i~~~~~~~~~~-~~DvVi~-~~d~-~~~r~~l~~~~-~~~~ip~i~~g~ 144 (228)
T cd00757 99 RLDAENAEELIA-GYDLVLD-CTDN-FATRYLINDAC-VKLGKPLVSGAV 144 (228)
T ss_pred eeCHHHHHHHHh-CCCEEEE-cCCC-HHHHHHHHHHH-HHcCCCEEEEEe
Confidence 333333444332 4565443 3332 22333445555 567766554343
No 268
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=91.79 E-value=0.41 Score=40.32 Aligned_cols=28 Identities=21% Similarity=0.135 Sum_probs=23.5
Q ss_pred EEEEcCCCCCCcHHHHHHHHcC--CeEEEE
Q 020101 45 VICQGITGKNGTFHTEQAIEYG--TKMVGG 72 (331)
Q Consensus 45 VaIvGasgk~G~~~~~~l~~~g--~~iv~~ 72 (331)
|+|.|+||.+|+..++.++++. |++++.
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~L 30 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVAL 30 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEE
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEE
Confidence 5689999999999999998874 888754
No 269
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=91.74 E-value=0.44 Score=43.16 Aligned_cols=55 Identities=29% Similarity=0.422 Sum_probs=42.0
Q ss_pred CCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC---CCCCEEEEEeCCCC
Q 020101 221 TNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG---TEKPIVAFIAGLTA 275 (331)
Q Consensus 221 v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r---~~KPVvv~k~Grs~ 275 (331)
-.+.+.|+.+.+||++++|++.+++.|.......++.++++ .+||||++--|...
T Consensus 28 ~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~~~l~~~l~~~~~~KpViA~v~g~a~ 85 (214)
T cd07022 28 EGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARAGKPIVAFVNGLAA 85 (214)
T ss_pred HHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHhcCCCEEEEECCchh
Confidence 35677778889999999999999987654555566666664 36999999988644
No 270
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=91.66 E-value=1.1 Score=43.69 Aligned_cols=88 Identities=17% Similarity=0.205 Sum_probs=54.1
Q ss_pred CcHHHHHHHHcCCeEEEEeCCCCCC--------ceecCcccccCHHHhhhcCCCCEEEEecChhh-HHHHHHHHHHcC-C
Q 020101 55 GTFHTEQAIEYGTKMVGGVTPKKGG--------TEHLGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAILEAMEAE-L 124 (331)
Q Consensus 55 G~~~~~~l~~~g~~iv~~VnP~~~g--------~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~-~~~~v~~~~~~G-i 124 (331)
|.....+|.+.|++++ .+|++... -...|+.+..+..++.. +.|++++++|... +.++++.+...- -
T Consensus 32 G~~MA~~La~aG~~V~-v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~--~ADvVIlaVP~~~~v~~Vl~~L~~~L~~ 108 (342)
T PRK12557 32 GSRMAIEFAEAGHDVV-LAEPNRSILSEELWKKVEDAGVKVVSDDAEAAK--HGEIHILFTPFGKKTVEIAKNILPHLPE 108 (342)
T ss_pred HHHHHHHHHhCCCeEE-EEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHh--CCCEEEEECCCcHHHHHHHHHHHhhCCC
Confidence 3455677888899866 77775410 01246777778877766 7899999999988 677777665432 2
Q ss_pred cEEEEecCCCChhHH-HHHHHH
Q 020101 125 DLVVCITEGIPQHDM-VRVKAA 145 (331)
Q Consensus 125 ~~ivi~t~G~~e~~~-~~l~~~ 145 (331)
..+|+-++..+.... +.+.+.
T Consensus 109 g~IVId~ST~~~~~~s~~l~~~ 130 (342)
T PRK12557 109 NAVICNTCTVSPVVLYYSLEGE 130 (342)
T ss_pred CCEEEEecCCCHHHHHHHHHHH
Confidence 233443333344433 344333
No 271
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=91.57 E-value=1.2 Score=42.11 Aligned_cols=111 Identities=15% Similarity=0.150 Sum_probs=66.7
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccC-----------HHHhhhcCCCCEEEEecCh
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNT-----------VAEAKAETKANASAIYVPP 109 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~s-----------l~dl~~~~~iDlaii~vp~ 109 (331)
+..+|+|+|+ |-.|..++++|...|..-+..||+........+...+.. +.+-..+.++++-|...+.
T Consensus 29 ~~s~VlVvG~-GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~ 107 (268)
T PRK15116 29 ADAHICVVGI-GGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDD 107 (268)
T ss_pred cCCCEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEec
Confidence 4566889999 889999999999998643337777653222233333221 2222333467776666554
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEE
Q 020101 110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155 (331)
Q Consensus 110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~vi 155 (331)
....+..++....+...|| -+.+- ......|.+.| +++++.++
T Consensus 108 ~i~~e~~~~ll~~~~D~VI-daiD~-~~~k~~L~~~c-~~~~ip~I 150 (268)
T PRK15116 108 FITPDNVAEYMSAGFSYVI-DAIDS-VRPKAALIAYC-RRNKIPLV 150 (268)
T ss_pred ccChhhHHHHhcCCCCEEE-EcCCC-HHHHHHHHHHH-HHcCCCEE
Confidence 4445566666666677654 34442 22334566777 78888876
No 272
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=91.53 E-value=1.3 Score=42.51 Aligned_cols=31 Identities=26% Similarity=0.521 Sum_probs=27.3
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEE
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVG 71 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~ 71 (331)
++.+|+|.|++|-+|+.+.+.|.+.|+++++
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~~G~~V~~ 33 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLELGAEVYG 33 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHCCCEEEE
Confidence 4567899999999999999999999999774
No 273
>PRK06179 short chain dehydrogenase; Provisional
Probab=91.49 E-value=2.5 Score=38.69 Aligned_cols=30 Identities=17% Similarity=0.303 Sum_probs=25.8
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEE
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVG 71 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~ 71 (331)
...|+|.|++|.+|+.+.+.|.+.|++++.
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~~V~~ 33 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGYRVFG 33 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEE
Confidence 345788999999999999999999999763
No 274
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=91.40 E-value=0.6 Score=42.02 Aligned_cols=54 Identities=19% Similarity=0.303 Sum_probs=40.1
Q ss_pred CHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHh---C-CCCCEEEEEeCCCC
Q 020101 222 NFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKES---G-TEKPIVAFIAGLTA 275 (331)
Q Consensus 222 ~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~---r-~~KPVvv~k~Grs~ 275 (331)
.+.+.|+.+.+||++++|++++.+.|-......++.+++ + .+||||++--|.+.
T Consensus 21 ~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~~i~~~i~~~~~~~kpvia~v~g~~~ 78 (208)
T cd07023 21 SLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMGDVAA 78 (208)
T ss_pred HHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCcEEEEECCcch
Confidence 356777788899999999999998665455444444443 3 58999999988654
No 275
>PTZ00117 malate dehydrogenase; Provisional
Probab=91.37 E-value=1.8 Score=41.70 Aligned_cols=87 Identities=14% Similarity=0.123 Sum_probs=55.4
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcC-CeEEEEeCCCCC---Cce--------ecC----cccccCHHHhhhcCCCCEEE
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKG---GTE--------HLG----LPVFNTVAEAKAETKANASA 104 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g-~~iv~~VnP~~~---g~~--------i~G----~p~y~sl~dl~~~~~iDlai 104 (331)
|..||+|||+ |.+|+.+...+...| .+++ .+|.+.. |.. ..+ +..+.+.+++ . +.|++|
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~-L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l-~--~ADiVV 78 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNLGDVV-LYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYEDI-K--DSDVVV 78 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCCCeEE-EEECCCccchhHHHHHhhhccccCCCeEEEeCCCHHHh-C--CCCEEE
Confidence 5668999999 999999888777767 4643 6665431 111 111 1223456655 3 689999
Q ss_pred Eec--Ch--------------hhHHHHHHHHHHcCCcEEEEecC
Q 020101 105 IYV--PP--------------PFAAAAILEAMEAELDLVVCITE 132 (331)
Q Consensus 105 i~v--p~--------------~~~~~~v~~~~~~Gi~~ivi~t~ 132 (331)
++. |. +...+++++..+...+.++++.+
T Consensus 79 itag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvs 122 (319)
T PTZ00117 79 ITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVT 122 (319)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 988 32 33567777777787777454443
No 276
>PRK14851 hypothetical protein; Provisional
Probab=91.36 E-value=0.94 Score=48.29 Aligned_cols=112 Identities=12% Similarity=0.084 Sum_probs=57.8
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceec-----------CcccccCHHHhhhcCCCCEEEEecCh
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHL-----------GLPVFNTVAEAKAETKANASAIYVPP 109 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~-----------G~p~y~sl~dl~~~~~iDlaii~vp~ 109 (331)
+..+|+|+|+ |-.|..++++|...|..-+..||+........ |.+-..-+++...+.++++-|...+.
T Consensus 42 ~~~~VlIvG~-GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~ 120 (679)
T PRK14851 42 AEAKVAIPGM-GGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPA 120 (679)
T ss_pred hcCeEEEECc-CHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEec
Confidence 4567899999 88999999999988864233666544311111 21111112222222345555555544
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEE
Q 020101 110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155 (331)
Q Consensus 110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~vi 155 (331)
....+.+++.++ ++..|+..+..++-+.-..+.+.| +++++.+|
T Consensus 121 ~i~~~n~~~~l~-~~DvVid~~D~~~~~~r~~l~~~c-~~~~iP~i 164 (679)
T PRK14851 121 GINADNMDAFLD-GVDVVLDGLDFFQFEIRRTLFNMA-REKGIPVI 164 (679)
T ss_pred CCChHHHHHHHh-CCCEEEECCCCCcHHHHHHHHHHH-HHCCCCEE
Confidence 444455555544 566544333333222222344445 56666655
No 277
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=91.34 E-value=1.1 Score=43.62 Aligned_cols=89 Identities=16% Similarity=0.184 Sum_probs=62.0
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC-CCCCCc--------------e--ecCcccccCHHHhhhcCCCCEE
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGT--------------E--HLGLPVFNTVAEAKAETKANAS 103 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn-P~~~g~--------------~--i~G~p~y~sl~dl~~~~~iDla 103 (331)
....|.|.||||=+|+.+++.|++.||++.+-|- |..... . ...+.-|.++++..+ ++|.|
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~--gcdgV 82 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAID--GCDGV 82 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHh--CCCEE
Confidence 4567899999999999999999999999887553 432100 0 124455667777776 78888
Q ss_pred E-EecChh----------------hHHHHHHHHHHcC-CcEEEEecC
Q 020101 104 A-IYVPPP----------------FAAAAILEAMEAE-LDLVVCITE 132 (331)
Q Consensus 104 i-i~vp~~----------------~~~~~v~~~~~~G-i~~ivi~t~ 132 (331)
+ ++.|.+ -+..+++.|.+.. |+.+| +|+
T Consensus 83 fH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV-~TS 128 (327)
T KOG1502|consen 83 FHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVV-YTS 128 (327)
T ss_pred EEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEE-Eec
Confidence 7 444422 2455788888888 99966 554
No 278
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=91.26 E-value=0.83 Score=44.58 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=61.2
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccC-------------HHHhhhcCCCCEEEEec
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNT-------------VAEAKAETKANASAIYV 107 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~s-------------l~dl~~~~~iDlaii~v 107 (331)
+..+|+|+|+ |..|..++++|...|..-+..||+.....+......+-+ ..+-..+.++++-+...
T Consensus 23 ~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~ 101 (339)
T PRK07688 23 REKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAI 101 (339)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 4566899999 999999999999999853348888653222122222211 11222223455545444
Q ss_pred ChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCC
Q 020101 108 PPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCP 160 (331)
Q Consensus 108 p~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~ 160 (331)
..+...+.+.+.++ +...++..+..+ +....+.+.| .++++.++-..+.
T Consensus 102 ~~~~~~~~~~~~~~-~~DlVid~~Dn~--~~r~~ln~~~-~~~~iP~i~~~~~ 150 (339)
T PRK07688 102 VQDVTAEELEELVT-GVDLIIDATDNF--ETRFIVNDAA-QKYGIPWIYGACV 150 (339)
T ss_pred eccCCHHHHHHHHc-CCCEEEEcCCCH--HHHHHHHHHH-HHhCCCEEEEeee
Confidence 44444444555543 456655433332 2222344555 5677765543433
No 279
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.23 E-value=0.46 Score=47.32 Aligned_cols=78 Identities=13% Similarity=0.136 Sum_probs=52.9
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCc-----ccccCHHHhhhcCCCCEEEEecChhhHHHHHH
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGL-----PVFNTVAEAKAETKANASAIYVPPPFAAAAIL 117 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~-----p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~ 117 (331)
.+|.|+|. |..|..+++.|.+.|++++ +.|++. ....-. ......+.++. +.|++|.+.+....-+.++
T Consensus 4 ~~i~iiGl-G~~G~slA~~l~~~G~~V~-g~D~~~--~~~~~~~~~~~~~~~~~~~~~~--~~dlvV~s~gi~~~~~~l~ 77 (418)
T PRK00683 4 QRVVVLGL-GVTGKSIARFLAQKGVYVI-GVDKSL--EALQSCPYIHERYLENAEEFPE--QVDLVVRSPGIKKEHPWVQ 77 (418)
T ss_pred CeEEEEEE-CHHHHHHHHHHHHCCCEEE-EEeCCc--cccchhHHHhhhhcCCcHHHhc--CCCEEEECCCCCCCcHHHH
Confidence 46889999 9999988999999999866 777654 211101 11223333444 5799888876655667788
Q ss_pred HHHHcCCcE
Q 020101 118 EAMEAELDL 126 (331)
Q Consensus 118 ~~~~~Gi~~ 126 (331)
+|.++|++.
T Consensus 78 ~A~~~g~~v 86 (418)
T PRK00683 78 AAIASHIPV 86 (418)
T ss_pred HHHHCCCcE
Confidence 888888763
No 280
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=91.22 E-value=0.65 Score=40.68 Aligned_cols=55 Identities=20% Similarity=0.223 Sum_probs=38.8
Q ss_pred CHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHH---HHHHhC-CCCCEEEEEeCCCCC
Q 020101 222 NFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAA---LIKESG-TEKPIVAFIAGLTAP 276 (331)
Q Consensus 222 ~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~---f~~a~r-~~KPVvv~k~Grs~~ 276 (331)
.+.+.++.+.+||++++|++.+.+.|.......+ ++++.+ .+||||++--|....
T Consensus 26 ~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g 84 (177)
T cd07014 26 TTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGGNAAS 84 (177)
T ss_pred HHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCchhH
Confidence 3455566677899999999999886654444433 333444 789999999876554
No 281
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=91.16 E-value=0.54 Score=42.53 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=40.5
Q ss_pred CHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHH---HHHhC-CCCCEEEEEeCCCC
Q 020101 222 NFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAAL---IKESG-TEKPIVAFIAGLTA 275 (331)
Q Consensus 222 ~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f---~~a~r-~~KPVvv~k~Grs~ 275 (331)
++.+.|+.+.+||++++|+|.+.+.|-......++ ++.++ .+||||++-.|...
T Consensus 25 ~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~ 82 (211)
T cd07019 25 TTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAGGAAA 82 (211)
T ss_pred HHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCeeh
Confidence 46677788899999999999988776555444443 33444 68999999988764
No 282
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=91.08 E-value=0.75 Score=44.92 Aligned_cols=88 Identities=15% Similarity=0.129 Sum_probs=63.8
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCC--------------Cc---e---------ecC--ccccc--CH
Q 020101 43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKG--------------GT---E---------HLG--LPVFN--TV 91 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~--------------g~---~---------i~G--~p~y~--sl 91 (331)
+||+|-|. |++|+.++|.+.+. ++++++.-||... |. + +.| ++++. +.
T Consensus 3 ~ki~INGf-GRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~dp 81 (337)
T PTZ00023 3 VKLGINGF-GRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVHVFFEKDP 81 (337)
T ss_pred eEEEEECc-ChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEEEEeCCCh
Confidence 68999999 99999999987654 6888855444311 00 0 123 23443 57
Q ss_pred HHhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 020101 92 AEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE 132 (331)
Q Consensus 92 ~dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~ 132 (331)
+++|= +.++|+++.++......+.+...+++|.+.|++ +.
T Consensus 82 ~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~i-Sa 122 (337)
T PTZ00023 82 AAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIM-SA 122 (337)
T ss_pred hhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEe-CC
Confidence 77773 357999999999999999999999999998664 44
No 283
>PLN02306 hydroxypyruvate reductase
Probab=90.92 E-value=0.45 Score=47.29 Aligned_cols=65 Identities=14% Similarity=0.145 Sum_probs=47.2
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHH-HcCCeEEEEeCCCCCCc-e----ecC------------cccccCHHHhhhcCCCCE
Q 020101 41 KNTRVICQGITGKNGTFHTEQAI-EYGTKMVGGVTPKKGGT-E----HLG------------LPVFNTVAEAKAETKANA 102 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~-~~g~~iv~~VnP~~~g~-~----i~G------------~p~y~sl~dl~~~~~iDl 102 (331)
...+|.|+|. |++|+.+++.+. .+|.+++ .+||....+ . ..| ...+.+++++.. ..|+
T Consensus 164 ~gktvGIiG~-G~IG~~vA~~l~~~fGm~V~-~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~--~sDi 239 (386)
T PLN02306 164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLR--EADV 239 (386)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCEEE-EECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHh--hCCE
Confidence 4567889999 999999999985 7899987 777754100 0 111 122358999988 7899
Q ss_pred EEEecCh
Q 020101 103 SAIYVPP 109 (331)
Q Consensus 103 aii~vp~ 109 (331)
+++.+|-
T Consensus 240 V~lh~Pl 246 (386)
T PLN02306 240 ISLHPVL 246 (386)
T ss_pred EEEeCCC
Confidence 9999884
No 284
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.86 E-value=0.58 Score=44.39 Aligned_cols=67 Identities=18% Similarity=0.091 Sum_probs=45.6
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce--------------ecC-------------cccccCHHHh
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--------------HLG-------------LPVFNTVAEA 94 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~--------------i~G-------------~p~y~sl~dl 94 (331)
..+|+|||+ |.||.-++..+...|++++ .+|+....-+ -.| +....+++++
T Consensus 5 ~~~V~ViGa-G~mG~~iA~~~a~~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 82 (286)
T PRK07819 5 IQRVGVVGA-GQMGAGIAEVCARAGVDVL-VFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDF 82 (286)
T ss_pred ccEEEEEcc-cHHHHHHHHHHHhCCCEEE-EEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHh
Confidence 347899999 9999999999999999865 5444331000 011 2245567554
Q ss_pred hhcCCCCEEEEecChhhHH
Q 020101 95 KAETKANASAIYVPPPFAA 113 (331)
Q Consensus 95 ~~~~~iDlaii~vp~~~~~ 113 (331)
+ +.|+++-++|.+...
T Consensus 83 -~--~~d~ViEav~E~~~~ 98 (286)
T PRK07819 83 -A--DRQLVIEAVVEDEAV 98 (286)
T ss_pred -C--CCCEEEEecccCHHH
Confidence 3 689999999986653
No 285
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=90.84 E-value=0.81 Score=46.09 Aligned_cols=118 Identities=16% Similarity=0.141 Sum_probs=69.6
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccC-----------HHHhhhcCCCCEEEEecCh-
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNT-----------VAEAKAETKANASAIYVPP- 109 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~s-----------l~dl~~~~~iDlaii~vp~- 109 (331)
+.+|.|+|+ |-.|..++++|.-.|..-+..||+.....+..|.-.+-+ +.+...+.++|+-+.+...
T Consensus 20 ~s~VlliG~-gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp~V~i~~~~e~ 98 (425)
T cd01493 20 SAHVCLLNA-TATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPDVNGSAVEES 98 (425)
T ss_pred hCeEEEEcC-cHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 456889999 669999999999989864448888764333233222221 2222334467776655432
Q ss_pred -hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCccc
Q 020101 110 -PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIK 164 (331)
Q Consensus 110 -~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~ 164 (331)
+...+...+.. .+...|+ .+..++....++.+.| +++++.+|-.++.|++-
T Consensus 99 ~~~ll~~~~~f~-~~fdiVI--~t~~~~~~~~~L~~~c-~~~~iPlI~~~s~G~~G 150 (425)
T cd01493 99 PEALLDNDPSFF-SQFTVVI--ATNLPESTLLRLADVL-WSANIPLLYVRSYGLYG 150 (425)
T ss_pred cchhhhhHHHHh-cCCCEEE--ECCCCHHHHHHHHHHH-HHcCCCEEEEecccCEE
Confidence 21122112222 2445433 3444555556677777 78888888888888775
No 286
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=90.80 E-value=0.74 Score=43.81 Aligned_cols=78 Identities=18% Similarity=0.128 Sum_probs=52.4
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEec----------------
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYV---------------- 107 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~v---------------- 107 (331)
+|+|.|++|.+|+.+.+.+. .+++++ +.+.+. ..+.-..++.++..+.+||++|-+-
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~-~~~~v~-a~~~~~-----~Ditd~~~v~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~A~ 74 (281)
T COG1091 2 KILITGANGQLGTELRRALP-GEFEVI-ATDRAE-----LDITDPDAVLEVIRETRPDVVINAAAYTAVDKAESEPELAF 74 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC-CCceEE-eccCcc-----ccccChHHHHHHHHhhCCCEEEECccccccccccCCHHHHH
Confidence 47899999999998888887 567777 554432 2344455677777766789988652
Q ss_pred --ChhhHHHHHHHHHHcCCcEEE
Q 020101 108 --PPPFAAAAILEAMEAELDLVV 128 (331)
Q Consensus 108 --p~~~~~~~v~~~~~~Gi~~iv 128 (331)
....+..+++.|.+.|.+.|-
T Consensus 75 ~vNa~~~~~lA~aa~~~ga~lVh 97 (281)
T COG1091 75 AVNATGAENLARAAAEVGARLVH 97 (281)
T ss_pred HhHHHHHHHHHHHHHHhCCeEEE
Confidence 222344456667777777644
No 287
>PRK14030 glutamate dehydrogenase; Provisional
Probab=90.77 E-value=1.2 Score=45.20 Aligned_cols=112 Identities=14% Similarity=0.111 Sum_probs=67.2
Q ss_pred CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEE-------eCCCCCC-cee-------------c-----Ccc--cccCH
Q 020101 40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGG-------VTPKKGG-TEH-------------L-----GLP--VFNTV 91 (331)
Q Consensus 40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~-------VnP~~~g-~~i-------------~-----G~p--~y~sl 91 (331)
.+..+|+|.|. |+.|+..++.|.+.|.++++. .||+..- +.+ . ++| -|-+-
T Consensus 226 l~g~~vaIQGf-GnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i~~ 304 (445)
T PRK14030 226 IKGKTVAISGF-GNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFFAG 304 (445)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEcCC
Confidence 46788999998 999999999999999998854 5655321 010 0 111 00012
Q ss_pred HHhhhcCCCCEEEEe-cChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccC
Q 020101 92 AEAKAETKANASAIY-VPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN 158 (331)
Q Consensus 92 ~dl~~~~~iDlaii~-vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPn 158 (331)
+++.. .++|+++=| +......+.++...+.+.+.|+=.+-|....+..++ . +++||.++ |.
T Consensus 305 ~~~~~-~~cDVliPcAl~n~I~~~na~~l~~~~ak~V~EgAN~p~t~eA~~i---L-~~rGI~~v-PD 366 (445)
T PRK14030 305 KKPWE-QKVDIALPCATQNELNGEDADKLIKNGVLCVAEVSNMGCTAEAIDK---F-IAAKQLFA-PG 366 (445)
T ss_pred cccee-ccccEEeeccccccCCHHHHHHHHHcCCeEEEeCCCCCCCHHHHHH---H-HHCCCEEe-Cc
Confidence 23222 467887743 344556677777777789986644445332333332 2 56777665 54
No 288
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=90.73 E-value=1.2 Score=41.25 Aligned_cols=115 Identities=17% Similarity=0.166 Sum_probs=61.2
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCccccc-----------CHHHhhhcCCCCEEEEecCh
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFN-----------TVAEAKAETKANASAIYVPP 109 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~-----------sl~dl~~~~~iDlaii~vp~ 109 (331)
+..+|+|+|+ |-.|..++++|...|..-+..||+.....+..+...+- ...+-..+.++++-|...+.
T Consensus 31 ~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~ 109 (245)
T PRK05690 31 KAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINA 109 (245)
T ss_pred cCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEec
Confidence 4567899999 88999999999999875333777765422222222221 11222222345555554444
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCC
Q 020101 110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCP 160 (331)
Q Consensus 110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~ 160 (331)
....+.+++..+ +...++..+..+ +....+.+++ +++++.++--.+.
T Consensus 110 ~i~~~~~~~~~~-~~DiVi~~~D~~--~~r~~ln~~~-~~~~ip~v~~~~~ 156 (245)
T PRK05690 110 RLDDDELAALIA-GHDLVLDCTDNV--ATRNQLNRAC-FAAKKPLVSGAAI 156 (245)
T ss_pred cCCHHHHHHHHh-cCCEEEecCCCH--HHHHHHHHHH-HHhCCEEEEeeec
Confidence 333333444332 456544333222 2223344555 6777776654443
No 289
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=90.71 E-value=1.2 Score=48.50 Aligned_cols=117 Identities=15% Similarity=0.159 Sum_probs=71.1
Q ss_pred ccccc--CCCCeEEEEEcCCCCCCcHHHHHHHH-------cCC--eEEEEeCCCCCCceecCccc--c----------cC
Q 020101 34 APAVF--VDKNTRVICQGITGKNGTFHTEQAIE-------YGT--KMVGGVTPKKGGTEHLGLPV--F----------NT 90 (331)
Q Consensus 34 l~~ll--~~k~~~VaIvGasgk~G~~~~~~l~~-------~g~--~iv~~VnP~~~g~~i~G~p~--y----------~s 90 (331)
|++-| ..+.++|+|+|. |+.|+.+++.+.+ .|+ ++++..|.+..--...|+.. + .+
T Consensus 455 LH~~f~~~~~~~~i~l~G~-G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~ 533 (819)
T PRK09436 455 CHQSFFLSDQVLDVFVIGV-GGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREELAEAGEPFD 533 (819)
T ss_pred HHHHHhcccccccEEEEec-CHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHHhhccCCCC
Confidence 44444 447899999999 9999988876543 233 46655543220000112110 0 11
Q ss_pred HHH---hhhc--CCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecC-C--CCh--hHHHHHHHHHhccCCcEEE
Q 020101 91 VAE---AKAE--TKANASAIYVPPPFAAAAILEAMEAELDLVVCITE-G--IPQ--HDMVRVKAALNNQSKTRLV 155 (331)
Q Consensus 91 l~d---l~~~--~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~-G--~~e--~~~~~l~~~a~~~~gi~vi 155 (331)
+++ +... .+.|++|.+++.+.......+++++|++. | |+ . .+. +...+|.+.+ +++|..+.
T Consensus 534 ~~~~~~~~~~~~~~~~vvvd~t~~~~~~~~~~~al~~g~~V-V--taNK~~~a~~~~~~~el~~~a-~~~~~~~~ 604 (819)
T PRK09436 534 LDRLIRLVKEYHLLNPVIVDCTSSQAVADQYADFLAAGFHV-V--TPNKKANTSSYAYYHQLREAA-RKSRRKFL 604 (819)
T ss_pred HHHHHHHHhhcCCCCCEEEECCCChHHHHHHHHHHHcCCEE-E--cCCchhccCCHHHHHHHHHHH-HHcCCeEE
Confidence 222 2221 13589999999988888889999999997 2 33 2 221 3556777777 78887655
No 290
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=90.62 E-value=0.52 Score=41.38 Aligned_cols=56 Identities=14% Similarity=0.163 Sum_probs=43.3
Q ss_pred CCeEEEEEcCCCCC-CcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhh
Q 020101 41 KNTRVICQGITGKN-GTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPF 111 (331)
Q Consensus 41 k~~~VaIvGasgk~-G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~ 111 (331)
+..+|+|+|+ |.+ |..++++|.+.|.+++ .+|.+. +++.+... +.|++|.+|+...
T Consensus 43 ~gk~vlViG~-G~~~G~~~a~~L~~~g~~V~-v~~r~~-----------~~l~~~l~--~aDiVIsat~~~~ 99 (168)
T cd01080 43 AGKKVVVVGR-SNIVGKPLAALLLNRNATVT-VCHSKT-----------KNLKEHTK--QADIVIVAVGKPG 99 (168)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHhhCCCEEE-EEECCc-----------hhHHHHHh--hCCEEEEcCCCCc
Confidence 5677899999 776 8889999999998755 777542 34556555 6899999998865
No 291
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=90.62 E-value=1.1 Score=45.03 Aligned_cols=117 Identities=17% Similarity=0.165 Sum_probs=66.4
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEE-EeCCCCCC-ceecCcccccCHHHhhhcCCCCEEEEecChhhHHH-HHH
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGG-TEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAA-AIL 117 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~-~VnP~~~g-~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~-~v~ 117 (331)
...+|+|+|+ |.+|+.+++.++..|.+++. -+||...- ....|..+ .+++++.+ ..|++|.++......+ ...
T Consensus 211 ~Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal~--~aDVVI~aTG~~~vI~~~~~ 286 (425)
T PRK05476 211 AGKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEAAE--LGDIFVTATGNKDVITAEHM 286 (425)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHHHh--CCCEEEECCCCHHHHHHHHH
Confidence 3557889999 99999999999999998652 24554310 01236554 35777776 7999999986554433 222
Q ss_pred HHHHcCCcEEEEecCCCC-hhHHHHHHHHHhccCCcEEEccCCCCcccCC
Q 020101 118 EAMEAELDLVVCITEGIP-QHDMVRVKAALNNQSKTRLVGPNCPGVIKPG 166 (331)
Q Consensus 118 ~~~~~Gi~~ivi~t~G~~-e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~ 166 (331)
+..+.| .+++....+. |-+...|.+.+ ...+-+.||.-.+.-|+
T Consensus 287 ~~mK~G--ailiNvG~~d~Eid~~~L~~~~---~~~~~v~~~v~~y~~~~ 331 (425)
T PRK05476 287 EAMKDG--AILANIGHFDNEIDVAALEELA---VKWREIKPQVDEYTLPD 331 (425)
T ss_pred hcCCCC--CEEEEcCCCCCccChHHHhhcC---cceeecCCCceEEEeCC
Confidence 333333 3333333332 33444444332 11234567754444443
No 292
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.46 E-value=0.53 Score=47.07 Aligned_cols=81 Identities=17% Similarity=0.278 Sum_probs=51.2
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc------e--ecCccccc-C-HHHhhhcCCCCEEEEecChh
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT------E--HLGLPVFN-T-VAEAKAETKANASAIYVPPP 110 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~------~--i~G~p~y~-s-l~dl~~~~~iDlaii~vp~~ 110 (331)
+..+|+|+|+ |+.|...++.|.+.|++++ .++++.... + -.|+..+. + .++... ++|++|.++...
T Consensus 4 ~~k~v~iiG~-g~~G~~~A~~l~~~G~~V~-~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~d~vv~~~g~~ 79 (450)
T PRK14106 4 KGKKVLVVGA-GVSGLALAKFLKKLGAKVI-LTDEKEEDQLKEALEELGELGIELVLGEYPEEFLE--GVDLVVVSPGVP 79 (450)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhh--cCCEEEECCCCC
Confidence 3466889999 6699999999999999977 777753100 0 01443321 2 223333 689999877544
Q ss_pred hHHHHHHHHHHcCCc
Q 020101 111 FAAAAILEAMEAELD 125 (331)
Q Consensus 111 ~~~~~v~~~~~~Gi~ 125 (331)
..-+.+.+|.++|++
T Consensus 80 ~~~~~~~~a~~~~i~ 94 (450)
T PRK14106 80 LDSPPVVQAHKKGIE 94 (450)
T ss_pred CCCHHHHHHHHCCCc
Confidence 444466666666654
No 293
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=90.30 E-value=12 Score=32.67 Aligned_cols=88 Identities=14% Similarity=0.061 Sum_probs=49.5
Q ss_pred CCCEEEEecCh-HHH----HHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHH
Q 020101 180 PGRIGIVSRSG-TLT----YEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAA 254 (331)
Q Consensus 180 ~G~valisQSG-~~~----~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~ 254 (331)
..+|+++.... ... ..+.+...+.++-+.......... +-++..+...+...|+..+|++... ..+.
T Consensus 124 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~i~~~~~------~~a~ 195 (269)
T cd01391 124 WKRVALIYGDDGAYGRERLEGFKAALKKAGIEVVAIEYGDLDT--EKGFQALLQLLKAAPKPDAIFACND------EMAA 195 (269)
T ss_pred CceEEEEecCCcchhhHHHHHHHHHHHhcCcEEEeccccCCCc--cccHHHHHHHHhcCCCCCEEEEcCc------hHHH
Confidence 45667665544 222 223344455554333333333221 3578888899998888888877644 3566
Q ss_pred HHHHHhC-CC---CCEEEEEeCCCC
Q 020101 255 ALIKESG-TE---KPIVAFIAGLTA 275 (331)
Q Consensus 255 ~f~~a~r-~~---KPVvv~k~Grs~ 275 (331)
.++++++ .+ +.+.++-...++
T Consensus 196 ~~~~~~~~~g~~~~~~~ii~~~~~~ 220 (269)
T cd01391 196 GALKAAREAGLTPGDISIIGFDGSP 220 (269)
T ss_pred HHHHHHHHcCCCCCCCEEEeccccc
Confidence 7777665 22 455555444444
No 294
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=90.24 E-value=1.6 Score=42.12 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=29.4
Q ss_pred CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEe
Q 020101 40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGV 73 (331)
Q Consensus 40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~V 73 (331)
|...+|+|.|++|-+|+.+++.|.+.|++++...
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~ 41 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQRGYTVHATL 41 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 5677899999999999999999999999987443
No 295
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=90.14 E-value=2 Score=40.90 Aligned_cols=108 Identities=21% Similarity=0.253 Sum_probs=66.4
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCC--CCCce---e-----cCcccccCHHHhhhcCCCCEEEEecChh
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPK--KGGTE---H-----LGLPVFNTVAEAKAETKANASAIYVPPP 110 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~--~~g~~---i-----~G~p~y~sl~dl~~~~~iDlaii~vp~~ 110 (331)
+++|++.|. |..|...++.+.+. ++++++.+|.+ ..|++ + .|+..-.++++...- .+|.++...-.+
T Consensus 2 ~~~vvqyGt-G~vGv~air~l~akpe~elvgawv~s~ak~Gkdlgelagl~dlgV~a~~~~~avlAt-l~~~~~y~~~~~ 79 (350)
T COG3804 2 SLRVVQYGT-GSVGVAAIRGLLAKPELELVGAWVHSAAKSGKDLGELAGLPDLGVIATNSIDAVLAT-LADAVIYAPLLP 79 (350)
T ss_pred CceeEEecc-chHHHHHHHHHHcCCCCceEEEEecCcccccccHHHhcCCCCceeEeecccccceec-cccceeeecccc
Confidence 456778887 99998888877775 99999876644 33433 2 355555566665542 334444333222
Q ss_pred hHHHHHHHHHHcCCcEEEEecCC--------CChhHHHHHHHHHhccCCc-EEEc
Q 020101 111 FAAAAILEAMEAELDLVVCITEG--------IPQHDMVRVKAALNNQSKT-RLVG 156 (331)
Q Consensus 111 ~~~~~v~~~~~~Gi~~ivi~t~G--------~~e~~~~~l~~~a~~~~gi-~viG 156 (331)
. .+..++|+.+|++. | ++| ...+..++..+.| .++|. .+.|
T Consensus 80 ~-~~~y~rlL~aGiNV-v--~~g~~l~yPw~~~PelaeKpl~lA-araGn~Tl~g 129 (350)
T COG3804 80 S-VDEYARLLRAGINV-V--TPGPVLQYPWFYPPELAEKPLELA-ARAGNATLHG 129 (350)
T ss_pred h-HHHHHHHHHcCCce-e--ccCccccCCCcCChHHhhchHHHH-HhcCCceEEe
Confidence 3 77789999999997 3 342 2345555666666 45554 5655
No 296
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=90.13 E-value=0.84 Score=41.15 Aligned_cols=86 Identities=17% Similarity=0.205 Sum_probs=56.3
Q ss_pred HHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC---CCCCEEEEEeCCCCCCCCC---------CCCCcccccC
Q 020101 223 FVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG---TEKPIVAFIAGLTAPPGRR---------MGHAGAIVSG 290 (331)
Q Consensus 223 ~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r---~~KPVvv~k~Grs~~~g~~---------~sHtga~a~~ 290 (331)
+.+.|+-+.+||++++|++++.+.|.......++.++++ .+|||+++--|.....|.- ++.++.+.+-
T Consensus 18 l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~i 97 (207)
T TIGR00706 18 FDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSI 97 (207)
T ss_pred HHHHHHHHhhCCCccEEEEEecCCCCCHHHHHHHHHHHHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEee
Confidence 456677788899999999999987666677777777765 3599999998876531111 2222211100
Q ss_pred C-CCCHHHHHHHHHHcCCe
Q 020101 291 G-KGTAQDKIKTLREAGVT 308 (331)
Q Consensus 291 ~-~g~~~~~~a~~~~aGv~ 308 (331)
+ .....-+..++++.|+-
T Consensus 98 Gv~~~~~~~~~~l~k~Gv~ 116 (207)
T TIGR00706 98 GVILQGANVEKLYEKLGIE 116 (207)
T ss_pred eEEEecCCHHHHHHhCCce
Confidence 0 01223467889999996
No 297
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=90.04 E-value=3.6 Score=41.74 Aligned_cols=111 Identities=16% Similarity=0.097 Sum_probs=66.4
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHc--CCeEEEE---------------eCCCCCC--ce---------ec----Cccccc
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEY--GTKMVGG---------------VTPKKGG--TE---------HL----GLPVFN 89 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~--g~~iv~~---------------VnP~~~g--~~---------i~----G~p~y~ 89 (331)
.++|+|.|+||.+|+..++.++++ .|++++. .+|+... ++ .. +..++.
T Consensus 57 ~KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag~Ni~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~~~~~vl~ 136 (454)
T PLN02696 57 PKPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAGSNVTLLADQVRKFKPKLVAVRNESLVDELKEALADLDDKPEIIP 136 (454)
T ss_pred ccEEEEecCCcHhhHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCCCCcEEEE
Confidence 367899999999999999888775 5777753 1222210 00 00 112333
Q ss_pred ---CHHHhhhcCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCCh-hHHHHHHHHHhccCCcEEE
Q 020101 90 ---TVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQ-HDMVRVKAALNNQSKTRLV 155 (331)
Q Consensus 90 ---sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e-~~~~~l~~~a~~~~gi~vi 155 (331)
.+.++....++|+++.++-.-.-..-..+|+++|.+. . ++..-+- .....+.+.+ +++|.+++
T Consensus 137 G~egl~~la~~~evDiVV~AIvG~aGL~pTl~AIkaGK~V-A-LANKESLV~aG~lI~~~a-k~~~~~Il 203 (454)
T PLN02696 137 GEEGIVEVARHPEAVTVVTGIVGCAGLKPTVAAIEAGKDI-A-LANKETLIAGGPFVLPLA-KKHGVKIL 203 (454)
T ss_pred CHHHHHHHHcCCCCCEEEEeCccccchHHHHHHHHCCCcE-E-EecHHHHHhhHHHHHHHH-HHcCCeEe
Confidence 3555555557899999988876666668889999664 3 3432110 0122344555 56676655
No 298
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=89.97 E-value=2.2 Score=40.08 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=27.4
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEe
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGV 73 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~V 73 (331)
..+|.|.|++|-+|+.+++.|.+.|+++++.+
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~ 35 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGYTVKATV 35 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCCEEEEEE
Confidence 45688999999999999999999999977443
No 299
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=89.96 E-value=1.1 Score=45.12 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=34.2
Q ss_pred cccccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC
Q 020101 34 APAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT 74 (331)
Q Consensus 34 l~~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn 74 (331)
+.-=|.++.++|+|.|++|-+|+.+++.|.+.|+++++..+
T Consensus 112 ~~~~~~~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr 152 (436)
T PLN02166 112 VPVGIGRKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDN 152 (436)
T ss_pred CCcccccCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 44446778899999999999999999999999999885433
No 300
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=89.95 E-value=1.4 Score=43.24 Aligned_cols=116 Identities=12% Similarity=0.063 Sum_probs=62.1
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCccccc-----------CHHHhhhcCCCCEEEEecCh
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFN-----------TVAEAKAETKANASAIYVPP 109 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~-----------sl~dl~~~~~iDlaii~vp~ 109 (331)
+..+|+|+|+ |-.|..++++|...|+.-+..||+........+...+- ...+-..+.++++-|...+.
T Consensus 27 ~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~ 105 (355)
T PRK05597 27 FDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVR 105 (355)
T ss_pred hCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEe
Confidence 4567899999 88999999999999986444777765322222222221 11222222355665555444
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCC
Q 020101 110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG 161 (331)
Q Consensus 110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~G 161 (331)
....+.+.+.+ .+...|+..+..+ +....+.+.| +++++.+|--.+.|
T Consensus 106 ~i~~~~~~~~~-~~~DvVvd~~d~~--~~r~~~n~~c-~~~~ip~v~~~~~g 153 (355)
T PRK05597 106 RLTWSNALDEL-RDADVILDGSDNF--DTRHLASWAA-ARLGIPHVWASILG 153 (355)
T ss_pred ecCHHHHHHHH-hCCCEEEECCCCH--HHHHHHHHHH-HHcCCCEEEEEEec
Confidence 33333333433 3566655433333 1112233445 67777766544433
No 301
>PRK14852 hypothetical protein; Provisional
Probab=89.93 E-value=1.3 Score=48.77 Aligned_cols=118 Identities=16% Similarity=0.094 Sum_probs=61.5
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceec-----------CcccccCHHHhhhcCCCCEEEEecCh
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHL-----------GLPVFNTVAEAKAETKANASAIYVPP 109 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~-----------G~p~y~sl~dl~~~~~iDlaii~vp~ 109 (331)
+..+|+|+|+ |-.|..++++|...|..-+..+|......... |.+--....+...+.++++=|.+.+.
T Consensus 331 ~~srVlVvGl-GGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~ 409 (989)
T PRK14852 331 LRSRVAIAGL-GGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPE 409 (989)
T ss_pred hcCcEEEECC-cHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEec
Confidence 4566889999 77999999999988864333666544311111 22111112222223345555555444
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCC
Q 020101 110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG 161 (331)
Q Consensus 110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~G 161 (331)
....+.+++.+ .++..||.....++.+....+.+.| +++++.+|--.+.|
T Consensus 410 ~I~~en~~~fl-~~~DiVVDa~D~~~~~~rr~l~~~c-~~~~IP~I~ag~~G 459 (989)
T PRK14852 410 GVAAETIDAFL-KDVDLLVDGIDFFALDIRRRLFNRA-LELGIPVITAGPLG 459 (989)
T ss_pred CCCHHHHHHHh-hCCCEEEECCCCccHHHHHHHHHHH-HHcCCCEEEeeccc
Confidence 44445555544 3566655444444333323444444 56666666444433
No 302
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=89.73 E-value=1.2 Score=42.10 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.0
Q ss_pred EEcCCCCCCcHHHHHHHHcC--CeEE
Q 020101 47 CQGITGKNGTFHTEQAIEYG--TKMV 70 (331)
Q Consensus 47 IvGasgk~G~~~~~~l~~~g--~~iv 70 (331)
|.|++|-+|+.+++.|++.| +++.
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~~~~Vr 27 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGYIYEVR 27 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCCceEEE
Confidence 68999999999999999998 5554
No 303
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=89.72 E-value=3.8 Score=39.86 Aligned_cols=81 Identities=17% Similarity=0.207 Sum_probs=51.8
Q ss_pred CcHHHHHHHHcCCeEEEEeCCCCC--Cc------eecCcccccCHHHhhhcCCCCEEEEecChhhHH-HHHHHHHHcC-C
Q 020101 55 GTFHTEQAIEYGTKMVGGVTPKKG--GT------EHLGLPVFNTVAEAKAETKANASAIYVPPPFAA-AAILEAMEAE-L 124 (331)
Q Consensus 55 G~~~~~~l~~~g~~iv~~VnP~~~--g~------~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~-~~v~~~~~~G-i 124 (331)
|+..+++|.+.||++. ..|++.. .+ .-.|....++..++.+ +.|++++++|...+. ++++.++..- -
T Consensus 32 GspMArnLlkAGheV~-V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa--~ADVVIL~LPd~aaV~eVl~GLaa~L~~ 108 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVV-LAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAK--HGEIHVLFTPFGKGTFSIARTIIEHVPE 108 (341)
T ss_pred HHHHHHHHHHCCCEEE-EEeCChhhhhhhhhHHHHHCCCeecCCHHHHHh--CCCEEEEecCCHHHHHHHHHHHHhcCCC
Confidence 4566789999999976 5555431 01 1247888889999887 789999999988754 5555544432 2
Q ss_pred cEEEEecCCCChhH
Q 020101 125 DLVVCITEGIPQHD 138 (331)
Q Consensus 125 ~~ivi~t~G~~e~~ 138 (331)
..+||-++-.+.+.
T Consensus 109 GaIVID~STIsP~t 122 (341)
T TIGR01724 109 NAVICNTCTVSPVV 122 (341)
T ss_pred CCEEEECCCCCHHH
Confidence 33444344344443
No 304
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=89.70 E-value=0.95 Score=41.62 Aligned_cols=34 Identities=29% Similarity=0.330 Sum_probs=29.1
Q ss_pred CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC
Q 020101 40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT 74 (331)
Q Consensus 40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn 74 (331)
.+.++|+|+|. |+.|+..++.|.+.|.++++..|
T Consensus 29 l~~~~v~I~G~-G~VG~~~a~~L~~~g~~vv~v~D 62 (227)
T cd01076 29 LAGARVAIQGF-GNVGSHAARFLHEAGAKVVAVSD 62 (227)
T ss_pred ccCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEC
Confidence 35688999998 99999999999999999886544
No 305
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=89.67 E-value=5.8 Score=31.16 Aligned_cols=84 Identities=11% Similarity=0.052 Sum_probs=49.6
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccc-cCHHHhhhcCCCCEEEEec---ChhhHHHHHHHH
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVF-NTVAEAKAETKANASAIYV---PPPFAAAAILEA 119 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y-~sl~dl~~~~~iDlaii~v---p~~~~~~~v~~~ 119 (331)
+|+|||.-.++-...-+.+.++|++.+.- .++. |..-. ..+.+... ++|++|++| .......+-+.|
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~h-g~~~------~~~~~~~~l~~~i~--~aD~VIv~t~~vsH~~~~~vk~~a 71 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHH-GRDG------GDEKKASRLPSKIK--KADLVIVFTDYVSHNAMWKVKKAA 71 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEE-ecCC------CCccchhHHHHhcC--CCCEEEEEeCCcChHHHHHHHHHH
Confidence 37889964455555666778889986533 2221 11111 12444444 679999877 445566677778
Q ss_pred HHcCCcEEEEecCCCChhH
Q 020101 120 MEAELDLVVCITEGIPQHD 138 (331)
Q Consensus 120 ~~~Gi~~ivi~t~G~~e~~ 138 (331)
-+.+++.+. +.+.+-..
T Consensus 72 kk~~ip~~~--~~~~~~~~ 88 (97)
T PF10087_consen 72 KKYGIPIIY--SRSRGVSS 88 (97)
T ss_pred HHcCCcEEE--ECCCCHHH
Confidence 888888643 44444333
No 306
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=89.60 E-value=2.3 Score=38.15 Aligned_cols=99 Identities=13% Similarity=0.021 Sum_probs=66.5
Q ss_pred CcccccCCCCeEEEEEcCCCCCCcHHHHHHHHcC-Ce-EEE-----EeCCCCCCcee-cCcccccCHHHhhhc-CCCCEE
Q 020101 33 PAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYG-TK-MVG-----GVTPKKGGTEH-LGLPVFNTVAEAKAE-TKANAS 103 (331)
Q Consensus 33 ~l~~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g-~~-iv~-----~VnP~~~g~~i-~G~p~y~sl~dl~~~-~~iDla 103 (331)
|+..=|.-++..+.|+||||-.|+..++.+++.+ |. +++ +++|... +.+ .-..=|..+++.... .++|++
T Consensus 9 klrEDf~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~at~-k~v~q~~vDf~Kl~~~a~~~qg~dV~ 87 (238)
T KOG4039|consen 9 KLREDFRMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPATD-KVVAQVEVDFSKLSQLATNEQGPDVL 87 (238)
T ss_pred HHHHHHhhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCcccc-ceeeeEEechHHHHHHHhhhcCCceE
Confidence 3444466667778899999999999999998874 54 443 2555442 111 112223446665443 468988
Q ss_pred EEec---------------ChhhHHHHHHHHHHcCCcEEEEecC
Q 020101 104 AIYV---------------PPPFAAAAILEAMEAELDLVVCITE 132 (331)
Q Consensus 104 ii~v---------------p~~~~~~~v~~~~~~Gi~~ivi~t~ 132 (331)
.-+. -.+.+....+.|-++|++.+++.++
T Consensus 88 FcaLgTTRgkaGadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS 131 (238)
T KOG4039|consen 88 FCALGTTRGKAGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSS 131 (238)
T ss_pred EEeecccccccccCceEeechHHHHHHHHHHHhCCCeEEEEEec
Confidence 7653 3466788888899999999888776
No 307
>PRK06046 alanine dehydrogenase; Validated
Probab=89.58 E-value=0.41 Score=46.32 Aligned_cols=86 Identities=14% Similarity=0.099 Sum_probs=59.2
Q ss_pred CCCCeEEEEEcCCCCCCcHHHHHHHH-cCCeEEEEeCCCCCC-c----ee---cC--cccccCHHHhhhcCCCCEEEEec
Q 020101 39 VDKNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGG-T----EH---LG--LPVFNTVAEAKAETKANASAIYV 107 (331)
Q Consensus 39 ~~k~~~VaIvGasgk~G~~~~~~l~~-~g~~iv~~VnP~~~g-~----~i---~G--~p~y~sl~dl~~~~~iDlaii~v 107 (331)
.+...+|+|+|+ |.+++.+++.+.. .+++.++.+|+.... + +. .| +..|.+++++.+ .|+++.+|
T Consensus 126 ~~~~~~vgiiG~-G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~---aDiVv~aT 201 (326)
T PRK06046 126 RKDSKVVGIIGA-GNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD---CDILVTTT 201 (326)
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh---CCEEEEec
Confidence 456678999999 9999999988875 477877788887521 1 11 24 345788888874 79999999
Q ss_pred ChhhHHHHHHHHHHcCCcEEEE
Q 020101 108 PPPFAAAAILEAMEAELDLVVC 129 (331)
Q Consensus 108 p~~~~~~~v~~~~~~Gi~~ivi 129 (331)
|... +=.-.+.++.|.+..-+
T Consensus 202 ps~~-P~~~~~~l~~g~hV~~i 222 (326)
T PRK06046 202 PSRK-PVVKAEWIKEGTHINAI 222 (326)
T ss_pred CCCC-cEecHHHcCCCCEEEec
Confidence 9754 22224445777775444
No 308
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=89.58 E-value=2.8 Score=40.51 Aligned_cols=87 Identities=11% Similarity=0.051 Sum_probs=52.3
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCC-eEEEEeCCCCC---Cce--------ecC----cccccCHHHhhhcCCCCEEE
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKG---GTE--------HLG----LPVFNTVAEAKAETKANASA 104 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~-~iv~~VnP~~~---g~~--------i~G----~p~y~sl~dl~~~~~iDlai 104 (331)
|..||+|||+ |.+|..+...+...|+ +++ .+|.+.. ++. ..+ +....+.+++. +.|++|
T Consensus 5 ~~~KI~IIGa-G~vG~~ia~~la~~gl~~i~-LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l~---~aDiVI 79 (321)
T PTZ00082 5 KRRKISLIGS-GNIGGVMAYLIVLKNLGDVV-LFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDIA---GSDVVI 79 (321)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCeEE-EEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHhC---CCCEEE
Confidence 3468999998 9999988877776775 643 6665442 100 112 22234666653 689999
Q ss_pred Eec---------------------ChhhHHHHHHHHHHcCCcEEEEecC
Q 020101 105 IYV---------------------PPPFAAAAILEAMEAELDLVVCITE 132 (331)
Q Consensus 105 i~v---------------------p~~~~~~~v~~~~~~Gi~~ivi~t~ 132 (331)
++. ..+...++++++.+.+.+.+++..+
T Consensus 80 ~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~s 128 (321)
T PTZ00082 80 VTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVIT 128 (321)
T ss_pred ECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 865 1122556667777777775444333
No 309
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=89.53 E-value=1.8 Score=41.27 Aligned_cols=93 Identities=14% Similarity=0.167 Sum_probs=57.2
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC---------CCcee--cCc-cccc---CHHHhhhcCCCCEEEEe
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK---------GGTEH--LGL-PVFN---TVAEAKAETKANASAIY 106 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~---------~g~~i--~G~-p~y~---sl~dl~~~~~iDlaii~ 106 (331)
+++|+|+|+ |.+|....-.|.+.|.++. .|.... .|-.+ .|- ..++ ...+.. ..+|+++++
T Consensus 2 ~m~I~IiGa-GaiG~~~a~~L~~~G~~V~-lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~--~~~D~viv~ 77 (305)
T PRK05708 2 SMTWHILGA-GSLGSLWACRLARAGLPVR-LILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAA--EPIHRLLLA 77 (305)
T ss_pred CceEEEECC-CHHHHHHHHHHHhCCCCeE-EEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccc--cccCEEEEE
Confidence 357899999 9999998888888887755 444421 01011 011 1111 111111 268999999
Q ss_pred cChhhHHHHHHHHHHc-CC-cEEEEecCCCChhH
Q 020101 107 VPPPFAAAAILEAMEA-EL-DLVVCITEGIPQHD 138 (331)
Q Consensus 107 vp~~~~~~~v~~~~~~-Gi-~~ivi~t~G~~e~~ 138 (331)
|-.....++++.+... +- ..++.++-|+..++
T Consensus 78 vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e 111 (305)
T PRK05708 78 CKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQD 111 (305)
T ss_pred CCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHH
Confidence 9998888877766442 22 34566888996544
No 310
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=89.52 E-value=1.2 Score=43.60 Aligned_cols=86 Identities=13% Similarity=0.050 Sum_probs=59.5
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHc---CCeEEEEeCCCCC-------------Cc---e---------ecC--ccccc--C
Q 020101 43 TRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKG-------------GT---E---------HLG--LPVFN--T 90 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~---g~~iv~~VnP~~~-------------g~---~---------i~G--~p~y~--s 90 (331)
+||+|-|. |++|+.++|.+.+. ++++++.-|+... |+ + +.| ++++. +
T Consensus 2 ~ki~INGf-GRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~I~v~~~~d 80 (337)
T PRK07403 2 IRVAINGF-GRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSDRN 80 (337)
T ss_pred eEEEEEcc-ChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEEEEEEEcCC
Confidence 68999999 99999999986643 5788844333210 00 0 123 23333 2
Q ss_pred HHHhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEE
Q 020101 91 VAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVC 129 (331)
Q Consensus 91 l~dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi 129 (331)
.++++= +.++|+++.++......+.+...+++|.+.+++
T Consensus 81 p~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~i 120 (337)
T PRK07403 81 PLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLI 120 (337)
T ss_pred cccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEe
Confidence 355542 247999999999999999999999999998665
No 311
>PRK14031 glutamate dehydrogenase; Provisional
Probab=89.51 E-value=2.5 Score=42.88 Aligned_cols=31 Identities=26% Similarity=0.440 Sum_probs=27.9
Q ss_pred CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEE
Q 020101 40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVG 71 (331)
Q Consensus 40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~ 71 (331)
.+..+|+|.|. |+.|+..++.|.+.|.++++
T Consensus 226 l~g~rVaVQGf-GNVG~~aA~~L~e~GAkVVa 256 (444)
T PRK14031 226 LKGKVCLVSGS-GNVAQYTAEKVLELGGKVVT 256 (444)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEE
Confidence 46788999999 99999999999999999884
No 312
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.50 E-value=1.2 Score=42.93 Aligned_cols=60 Identities=12% Similarity=0.062 Sum_probs=48.2
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHH
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAA 114 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~ 114 (331)
+..+|+|||.|+.+|+....+|.+.|+++. ..|.+. + +++++.. +.|++|.+++.....+
T Consensus 158 ~Gk~V~vIG~s~ivG~PmA~~L~~~gatVt-v~~~~t--~---------~l~e~~~--~ADIVIsavg~~~~v~ 217 (301)
T PRK14194 158 TGKHAVVIGRSNIVGKPMAALLLQAHCSVT-VVHSRS--T---------DAKALCR--QADIVVAAVGRPRLID 217 (301)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEE-EECCCC--C---------CHHHHHh--cCCEEEEecCChhccc
Confidence 456788999988999999999999999877 677553 1 6888776 7899999998765433
No 313
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=89.47 E-value=1.8 Score=41.64 Aligned_cols=93 Identities=17% Similarity=0.169 Sum_probs=59.1
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC------CCce---ecCccccc----CHHHhhhcCCCCEEEEecCh
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK------GGTE---HLGLPVFN----TVAEAKAETKANASAIYVPP 109 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~------~g~~---i~G~p~y~----sl~dl~~~~~iDlaii~vp~ 109 (331)
+||.|+|+ |-+|....-.|.+.|..+...+.++. .|=. ..+.+.+. .-.+... +.|++++++.+
T Consensus 1 mkI~IlGa-GAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~--~~Dlviv~vKa 77 (307)
T COG1893 1 MKILILGA-GAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALG--PADLVIVTVKA 77 (307)
T ss_pred CeEEEECC-cHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcC--CCCEEEEEecc
Confidence 36889999 99999888888888844443344432 1111 12211111 1122222 68999999999
Q ss_pred hhHHHHHHHHHHcC--CcEEEEecCCCChhH
Q 020101 110 PFAAAAILEAMEAE--LDLVVCITEGIPQHD 138 (331)
Q Consensus 110 ~~~~~~v~~~~~~G--i~~ivi~t~G~~e~~ 138 (331)
-...++++.....- -..|+.++.|....+
T Consensus 78 ~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e 108 (307)
T COG1893 78 YQLEEALPSLAPLLGPNTVVLFLQNGLGHEE 108 (307)
T ss_pred ccHHHHHHHhhhcCCCCcEEEEEeCCCcHHH
Confidence 99999888877643 334677888987555
No 314
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=89.42 E-value=1.1 Score=45.13 Aligned_cols=87 Identities=16% Similarity=0.065 Sum_probs=60.8
Q ss_pred eEEEEEcCCCCCCcHHHHHHHH-cCCeEEEEeCCCCCCc---------ee------------------cC--cccc--cC
Q 020101 43 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGGT---------EH------------------LG--LPVF--NT 90 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~-~g~~iv~~VnP~~~g~---------~i------------------~G--~p~y--~s 90 (331)
+||+|.|. |++|+.+.|.+.+ .++++++.-||....+ .+ .| ++++ ++
T Consensus 86 ~kvgInGF-GRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~d 164 (421)
T PLN02272 86 TKIGINGF-GRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKRD 164 (421)
T ss_pred eEEEEECc-CHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecCC
Confidence 59999999 9999999998775 5789885555643211 11 12 1222 13
Q ss_pred HHHhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEe
Q 020101 91 VAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCI 130 (331)
Q Consensus 91 l~dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~ 130 (331)
+++++- +.++|+++.++......+.+...++.|.|.+||=
T Consensus 165 p~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVId 205 (421)
T PLN02272 165 PAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVIS 205 (421)
T ss_pred cccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEEC
Confidence 444442 2369999999999888888889999999886653
No 315
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=89.32 E-value=0.59 Score=45.65 Aligned_cols=59 Identities=10% Similarity=0.010 Sum_probs=41.4
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHH--HhhhcCCCCEEEEe
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVA--EAKAETKANASAIY 106 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~--dl~~~~~iDlaii~ 106 (331)
+..+|.|||+ |.||+..+++|.+.|+.-+...|... .. .-|..+. .+.-..+.|++|.+
T Consensus 173 ~~k~vLvIGa-Gem~~l~a~~L~~~g~~~i~v~nRt~--~~----~~~~~~~~~~~~~~~~~DvVIs~ 233 (338)
T PRK00676 173 KKASLLFIGY-SEINRKVAYYLQRQGYSRITFCSRQQ--LT----LPYRTVVREELSFQDPYDVIFFG 233 (338)
T ss_pred cCCEEEEEcc-cHHHHHHHHHHHHcCCCEEEEEcCCc--cc----cchhhhhhhhhhcccCCCEEEEc
Confidence 5678999999 99999999999999976444899886 21 1233321 11111368999986
No 316
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=89.28 E-value=1.5 Score=39.75 Aligned_cols=36 Identities=19% Similarity=0.086 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 77 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~ 77 (331)
+..+|+|+|+ |-+|..++++|...|..-+..+|+..
T Consensus 27 ~~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 3456889999 88999999999998876333777764
No 317
>PLN02700 homoserine dehydrogenase family protein
Probab=88.92 E-value=1.8 Score=42.95 Aligned_cols=28 Identities=11% Similarity=-0.059 Sum_probs=25.7
Q ss_pred CCCEEEEecChhhHHHHHHHHHHcCCcE
Q 020101 99 KANASAIYVPPPFAAAAILEAMEAELDL 126 (331)
Q Consensus 99 ~iDlaii~vp~~~~~~~v~~~~~~Gi~~ 126 (331)
..+++|++||.....+...+++++|++.
T Consensus 109 ~~~ViVD~T~s~~~~~~y~~aL~~G~hV 136 (377)
T PLN02700 109 TGLVVVDCSASMETIGALNEAVDLGCCI 136 (377)
T ss_pred CCCEEEECCCChHHHHHHHHHHHCCCeE
Confidence 4599999999988899999999999997
No 318
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=88.76 E-value=1.1 Score=43.51 Aligned_cols=88 Identities=10% Similarity=-0.138 Sum_probs=57.9
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCe---EEEEeC-C-CCCCcee--cCcccc-cCHHHhhhcCCCCEEEEecChhhHH
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTK---MVGGVT-P-KKGGTEH--LGLPVF-NTVAEAKAETKANASAIYVPPPFAA 113 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~---iv~~Vn-P-~~~g~~i--~G~p~y-~sl~dl~~~~~iDlaii~vp~~~~~ 113 (331)
..+|+| ||+|..|+..++.|.+.+|. +. .++ + ...|+.+ .|.... ..+++-. ..++|+++. .+.+...
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~-l~~s~~~s~gk~i~f~g~~~~V~~l~~~~-f~~vDia~f-ag~~~s~ 78 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDLEIEQIS-IVEIEPFGEEQGIRFNNKAVEQIAPEEVE-WADFNYVFF-AGKMAQA 78 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCCchhhee-ecccccccCCCEEEECCEEEEEEECCccC-cccCCEEEE-cCHHHHH
Confidence 457899 99999999999999988763 33 333 2 3334432 232211 1222211 137999999 9999999
Q ss_pred HHHHHHHHcCCcEEEEecCCC
Q 020101 114 AAILEAMEAELDLVVCITEGI 134 (331)
Q Consensus 114 ~~v~~~~~~Gi~~ivi~t~G~ 134 (331)
+....+.++|... |--++-|
T Consensus 79 ~~ap~a~~aG~~V-IDnSsa~ 98 (322)
T PRK06901 79 EHLAQAAEAGCIV-IDLYGIC 98 (322)
T ss_pred HHHHHHHHCCCEE-EECChHh
Confidence 9999999999775 3344434
No 319
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=88.69 E-value=3.6 Score=41.81 Aligned_cols=112 Identities=13% Similarity=0.153 Sum_probs=63.8
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEe-------CCCCCC-cee---cCcc-cc-cCHHHhhh-----------
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGV-------TPKKGG-TEH---LGLP-VF-NTVAEAKA----------- 96 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~V-------nP~~~g-~~i---~G~p-~y-~sl~dl~~----------- 96 (331)
+..+|+|.|. |+.|+..++.|.+.|.++++.- ||+..- +++ ..++ .. .++++.++
T Consensus 236 ~Gk~VaVqG~-GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~~~~ 314 (454)
T PTZ00079 236 EGKTVVVSGS-GNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVPGK 314 (454)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEeCCc
Confidence 5678999999 9999999999999999988653 443210 011 0000 00 11122110
Q ss_pred ---cCCCCEEEEe-cChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccC
Q 020101 97 ---ETKANASAIY-VPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN 158 (331)
Q Consensus 97 ---~~~iDlaii~-vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPn 158 (331)
+.++|+++=| +......+.++.+++.+++.|+=.+-+....+..++ . +++|+.++ |.
T Consensus 315 ~~~~~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA~~~---L-~~~GI~~~-PD 375 (454)
T PTZ00079 315 KPWEVPCDIAFPCATQNEINLEDAKLLIKNGCKLVAEGANMPTTIEATHL---F-KKNGVIFC-PG 375 (454)
T ss_pred CcccCCccEEEeccccccCCHHHHHHHHHcCCeEEEecCCCCCCHHHHHH---H-HHCCcEEE-Ch
Confidence 1467888744 344555677777778899975533333322232222 2 46676655 54
No 320
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=88.66 E-value=1.5 Score=41.14 Aligned_cols=31 Identities=19% Similarity=0.128 Sum_probs=26.0
Q ss_pred EEEEcCCCCCCcHHHHHHHHcCCeEEEEeCC
Q 020101 45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTP 75 (331)
Q Consensus 45 VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP 75 (331)
|.|.|++|-+|+.+++.|.+.|++++..++.
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~ 32 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDN 32 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecC
Confidence 5789999999999999999999976656554
No 321
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=88.58 E-value=2.7 Score=41.00 Aligned_cols=123 Identities=20% Similarity=0.274 Sum_probs=78.0
Q ss_pred CCCeEEEEEcCCCCCCcHHHHHHHHcCCe-EEEEeCCCCCC--ceecC--ccccc-----CHHHhhhcCCCCEEEEecCh
Q 020101 40 DKNTRVICQGITGKNGTFHTEQAIEYGTK-MVGGVTPKKGG--TEHLG--LPVFN-----TVAEAKAETKANASAIYVPP 109 (331)
Q Consensus 40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~-iv~~VnP~~~g--~~i~G--~p~y~-----sl~dl~~~~~iDlaii~vp~ 109 (331)
+....++|.||+|=.|..+.+.+...|.+ ..++=|+...+ ....| .++|+ .++++.+ ..++++-|+-|
T Consensus 4 e~e~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~LG~~~~~~p~~~p~~~~~~~~--~~~VVlncvGP 81 (382)
T COG3268 4 EREYDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRASLGPEAAVFPLGVPAALEAMAS--RTQVVLNCVGP 81 (382)
T ss_pred CcceeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHHHHHHHhcCccccccCCCCHHHHHHHHh--cceEEEecccc
Confidence 44556788999999999999999988766 44444433210 00112 23343 3667766 78999999977
Q ss_pred h--hHHHHHHHHHHcCCcEEEEecCCCC-hhHHHHH-HHHHhccCCcEEEccCCCCccc-CCCc
Q 020101 110 P--FAAAAILEAMEAELDLVVCITEGIP-QHDMVRV-KAALNNQSKTRLVGPNCPGVIK-PGEC 168 (331)
Q Consensus 110 ~--~~~~~v~~~~~~Gi~~ivi~t~G~~-e~~~~~l-~~~a~~~~gi~viGPnc~Gi~~-p~~~ 168 (331)
- ....+++.|+..|.+.+= +|.-+. -+.+.++ -+.| ++.|++|+ +|-||=+ |..+
T Consensus 82 yt~~g~plv~aC~~~GTdY~D-iTGEi~~fe~~i~~yh~~A-~~~Ga~Ii--~~cGFDsIPsDl 141 (382)
T COG3268 82 YTRYGEPLVAACAAAGTDYAD-ITGEIMFFENSIDLYHAQA-ADAGARII--PGCGFDSIPSDL 141 (382)
T ss_pred ccccccHHHHHHHHhCCCeee-ccccHHHHHHHHHHHHHHH-HhcCCEEe--ccCCCCcCccch
Confidence 4 457799999999999844 443221 1333344 3345 78999988 3445543 4444
No 322
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=88.47 E-value=7.2 Score=33.42 Aligned_cols=102 Identities=17% Similarity=0.262 Sum_probs=60.2
Q ss_pred CeEEE--EEcCCC-CCCcHHH-HHHHHcCCeEEEE-eCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhh----H
Q 020101 42 NTRVI--CQGITG-KNGTFHT-EQAIEYGTKMVGG-VTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPF----A 112 (331)
Q Consensus 42 ~~~Va--IvGasg-k~G~~~~-~~l~~~g~~iv~~-VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~----~ 112 (331)
..+|. -+|..| +.|..++ +.|++.||+++++ ..... +++ +....+ +++|++.++.-... .
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp--~e~--------v~aA~~-~dv~vIgvSsl~g~h~~l~ 80 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTP--EEA--------VRAAVE-EDVDVIGVSSLDGGHLTLV 80 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCH--HHH--------HHHHHh-cCCCEEEEEeccchHHHHH
Confidence 44543 235433 3555555 5566789997631 22111 111 222222 48999999986544 5
Q ss_pred HHHHHHHHHcCCcEEEEecCCC-ChhHHHHHHHHHhccCCc-EEEccCC
Q 020101 113 AAAILEAMEAELDLVVCITEGI-PQHDMVRVKAALNNQSKT-RLVGPNC 159 (331)
Q Consensus 113 ~~~v~~~~~~Gi~~ivi~t~G~-~e~~~~~l~~~a~~~~gi-~viGPnc 159 (331)
+.+++.|.++|...+.++..|. +.++..++ +++|+ ++.+|.+
T Consensus 81 ~~lve~lre~G~~~i~v~~GGvip~~d~~~l-----~~~G~~~if~pgt 124 (143)
T COG2185 81 PGLVEALREAGVEDILVVVGGVIPPGDYQEL-----KEMGVDRIFGPGT 124 (143)
T ss_pred HHHHHHHHHhCCcceEEeecCccCchhHHHH-----HHhCcceeeCCCC
Confidence 6677888889999887666764 55665544 35664 5888763
No 323
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=88.44 E-value=5.1 Score=37.56 Aligned_cols=92 Identities=13% Similarity=0.081 Sum_probs=59.1
Q ss_pred ccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCC-CCCceecCcc----cccC--HHHh---hhcCCCCEEEEe
Q 020101 37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK-KGGTEHLGLP----VFNT--VAEA---KAETKANASAIY 106 (331)
Q Consensus 37 ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~-~~g~~i~G~p----~y~s--l~dl---~~~~~iDlaii~ 106 (331)
.-..|..||+++||+|-.|+.+++.+.++.|--+.-|.-+ ..|+...+.+ .|.+ ..|+ .+++.+|.++.+
T Consensus 14 ~~~~k~~rv~LlGArGYTGknlv~Lin~HPylevthvssrel~Gqkl~~ytk~eiqy~~lst~D~~klee~~avd~wvma 93 (340)
T KOG4354|consen 14 VKPEKDIRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSRELAGQKLEVYTKLEIQYADLSTVDAVKLEEPHAVDHWVMA 93 (340)
T ss_pred cccCCCceEEEEeccccchhhHHHHhcCCCceEEEeeehhhhcCCcccCcchhheeecccchhhHHHhhcCCceeeeeee
Confidence 3346789999999999999999998888766333344433 2233332221 2222 2222 233578999999
Q ss_pred cChhhHHHHHHHHHHcCCcEEE
Q 020101 107 VPPPFAAAAILEAMEAELDLVV 128 (331)
Q Consensus 107 vp~~~~~~~v~~~~~~Gi~~iv 128 (331)
.|.......++..-...-|..+
T Consensus 94 LPn~vckpfv~~~~s~~gks~i 115 (340)
T KOG4354|consen 94 LPNQVCKPFVSLTESSDGKSRI 115 (340)
T ss_pred cchhhHHHHHHHHhhcCCceee
Confidence 9999988888776655545433
No 324
>PLN02494 adenosylhomocysteinase
Probab=88.44 E-value=1.4 Score=44.87 Aligned_cols=97 Identities=14% Similarity=0.171 Sum_probs=58.8
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEe--CCCCC-CceecCcccccCHHHhhhcCCCCEEEEecChhhHH-HHHH
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGV--TPKKG-GTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAA-AAIL 117 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~V--nP~~~-g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~-~~v~ 117 (331)
..+|+|+|+ |++|+.+++.++.+|.+++ .+ ||... .....|..+. +++++.. ..|+++.++....+. .-.-
T Consensus 254 GKtVvViGy-G~IGr~vA~~aka~Ga~VI-V~e~dp~r~~eA~~~G~~vv-~leEal~--~ADVVI~tTGt~~vI~~e~L 328 (477)
T PLN02494 254 GKVAVICGY-GDVGKGCAAAMKAAGARVI-VTEIDPICALQALMEGYQVL-TLEDVVS--EADIFVTTTGNKDIIMVDHM 328 (477)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEeCCchhhHHHHhcCCeec-cHHHHHh--hCCEEEECCCCccchHHHHH
Confidence 567889999 9999999999999999866 44 55321 0112455544 5778766 689999887765442 2222
Q ss_pred HHHHcCCcEEEEecCCC-ChhHHHHHHHH
Q 020101 118 EAMEAELDLVVCITEGI-PQHDMVRVKAA 145 (331)
Q Consensus 118 ~~~~~Gi~~ivi~t~G~-~e~~~~~l~~~ 145 (331)
++.+.| .+++....+ .+-+...|.+.
T Consensus 329 ~~MK~G--AiLiNvGr~~~eID~~aL~~~ 355 (477)
T PLN02494 329 RKMKNN--AIVCNIGHFDNEIDMLGLETY 355 (477)
T ss_pred hcCCCC--CEEEEcCCCCCccCHHHHhhc
Confidence 233333 333323333 34455555544
No 325
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=88.32 E-value=0.98 Score=47.42 Aligned_cols=81 Identities=16% Similarity=0.154 Sum_probs=52.2
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-c--eecCccccc-C--HHHhhhc---CCCCEEEEecChhhHH
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-T--EHLGLPVFN-T--VAEAKAE---TKANASAIYVPPPFAA 113 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~--~i~G~p~y~-s--l~dl~~~---~~iDlaii~vp~~~~~ 113 (331)
-.|+|+|. |+.|+.+.+.|.+.|++++ .+|.+... + ...|.++|- | =.++.++ .+.|++|++++.+..-
T Consensus 401 ~~vII~G~-Gr~G~~va~~L~~~g~~vv-vID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n 478 (601)
T PRK03659 401 PQVIIVGF-GRFGQVIGRLLMANKMRIT-VLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDT 478 (601)
T ss_pred CCEEEecC-chHHHHHHHHHHhCCCCEE-EEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHH
Confidence 45889999 9999999999999998877 66655410 1 124666553 2 1222221 3689999999886554
Q ss_pred -HHHHHHHHcCCc
Q 020101 114 -AAILEAMEAELD 125 (331)
Q Consensus 114 -~~v~~~~~~Gi~ 125 (331)
.++..+.+...+
T Consensus 479 ~~i~~~~r~~~p~ 491 (601)
T PRK03659 479 MKIVELCQQHFPH 491 (601)
T ss_pred HHHHHHHHHHCCC
Confidence 455555555443
No 326
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=88.27 E-value=2.2 Score=39.91 Aligned_cols=86 Identities=15% Similarity=0.097 Sum_probs=57.3
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcc-------cccCHHHhhhcCCCCEEEEecChhh---H
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLP-------VFNTVAEAKAETKANASAIYVPPPF---A 112 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p-------~y~sl~dl~~~~~iDlaii~vp~~~---~ 112 (331)
.+|.|+|. ..-|+.+++.|.+.|++++.-|--.+......+.+ -...+.++..+++++++|++|.|-+ .
T Consensus 3 ~~IlvlgG-T~egr~la~~L~~~g~~v~~Svat~~g~~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~is 81 (248)
T PRK08057 3 PRILLLGG-TSEARALARALAAAGVDIVLSLAGRTGGPADLPGPVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQIS 81 (248)
T ss_pred ceEEEEec-hHHHHHHHHHHHhCCCeEEEEEccCCCCcccCCceEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHHH
Confidence 45778887 45788899999888987554332212111111222 2345777777789999999998843 4
Q ss_pred HHHHHHHHHcCCcEEEE
Q 020101 113 AAAILEAMEAELDLVVC 129 (331)
Q Consensus 113 ~~~v~~~~~~Gi~~ivi 129 (331)
..+.+.|.+.|++.+=.
T Consensus 82 ~~a~~ac~~~~ipyiR~ 98 (248)
T PRK08057 82 ANAAAACRALGIPYLRL 98 (248)
T ss_pred HHHHHHHHHhCCcEEEE
Confidence 66778888999988543
No 327
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=88.15 E-value=0.71 Score=42.99 Aligned_cols=112 Identities=15% Similarity=0.165 Sum_probs=67.7
Q ss_pred CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEE-------eCCCCCC-cee-------cC-ccccc----------CH-H
Q 020101 40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGG-------VTPKKGG-TEH-------LG-LPVFN----------TV-A 92 (331)
Q Consensus 40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~-------VnP~~~g-~~i-------~G-~p~y~----------sl-~ 92 (331)
.+..+|+|.|. |+.|+..++.|.+.|.++++. .||+..- +++ .. +.-|+ +- +
T Consensus 30 l~g~~v~IqGf-G~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 108 (244)
T PF00208_consen 30 LEGKRVAIQGF-GNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDD 108 (244)
T ss_dssp STTCEEEEEES-SHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHC
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccc
Confidence 46688899999 999999999999999998843 3665310 000 12 23333 11 1
Q ss_pred HhhhcCCCCEEEEec-ChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccC
Q 020101 93 EAKAETKANASAIYV-PPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN 158 (331)
Q Consensus 93 dl~~~~~iDlaii~v-p~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPn 158 (331)
++.+ .++|+.+-|- +.....+.+...++.|.|.|+-.+-+....+..++ . +++|+.++ |+
T Consensus 109 ~il~-~~~DiliP~A~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~~---L-~~rGI~vi-PD 169 (244)
T PF00208_consen 109 EILS-VDCDILIPCALGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADEI---L-RERGILVI-PD 169 (244)
T ss_dssp HGGT-SSSSEEEEESSSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHHH---H-HHTT-EEE--H
T ss_pred cccc-ccccEEEEcCCCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHHH---H-HHCCCEEE-cc
Confidence 4443 4799999776 44556777776778889986644444322222222 2 57787666 44
No 328
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=88.13 E-value=1 Score=47.17 Aligned_cols=87 Identities=16% Similarity=0.116 Sum_probs=51.4
Q ss_pred CHHHHHHHhhcCCCccEEEEEEccC-CCcHHHHHHHHHH---hC-CCCCEEEEEeCCCCCCCCC-C--------CCCccc
Q 020101 222 NFVDCVTKFIADPQTEGIILIGEIG-GTAEEDAAALIKE---SG-TEKPIVAFIAGLTAPPGRR-M--------GHAGAI 287 (331)
Q Consensus 222 ~~~d~l~~l~~Dp~T~~I~ly~E~~-g~~~~~~~~f~~a---~r-~~KPVvv~k~Grs~~~g~~-~--------sHtga~ 287 (331)
++.+.|+...+||++|.|+|.+.+. |.......+..++ .| .+|||+++-.+-+.. +.- + .++|++
T Consensus 80 ~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~sgKpVvA~~~~~~s~-~YylAs~AD~I~~~p~G~v 158 (584)
T TIGR00705 80 DIVNAIRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAYGTNYSQG-QYYLASFADEIILNPMGSV 158 (584)
T ss_pred HHHHHHHHHhcCCCceEEEEEccCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEEccccch-hhhhhhhCCEEEECCCceE
Confidence 4556667788999999999999852 3223333333333 34 689999986544332 221 3 334554
Q ss_pred ccCCCCC-HHHHHHHHHHcCCeE
Q 020101 288 VSGGKGT-AQDKIKTLREAGVTV 309 (331)
Q Consensus 288 a~~~~g~-~~~~~a~~~~aGv~~ 309 (331)
...+-.. ..-+..+|++.||-.
T Consensus 159 ~~~G~~~~~~~~k~~ldKlGV~~ 181 (584)
T TIGR00705 159 DLHGFYTETLFYKGMLDKLGVRW 181 (584)
T ss_pred EeeceecccccHHHHHHHcCCeE
Confidence 3211111 123678999999864
No 329
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=88.12 E-value=1.9 Score=42.88 Aligned_cols=116 Identities=17% Similarity=0.098 Sum_probs=60.6
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccC-----------HHHhhhcCCCCEEEEecCh
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNT-----------VAEAKAETKANASAIYVPP 109 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~s-----------l~dl~~~~~iDlaii~vp~ 109 (331)
+..+|+|+|+ |-.|..++++|...|..-+..||+........+...+-+ ..+...+.++++-|...+.
T Consensus 41 ~~~~VlviG~-GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 119 (392)
T PRK07878 41 KNARVLVIGA-GGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEF 119 (392)
T ss_pred hcCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEec
Confidence 4567899999 889999999999988864448887653222222222211 1111222345555544433
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCC
Q 020101 110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG 161 (331)
Q Consensus 110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~G 161 (331)
....+.+.+.++ +...|+..+..+ +....+.+.| +++++.++--.+.|
T Consensus 120 ~i~~~~~~~~~~-~~D~Vvd~~d~~--~~r~~ln~~~-~~~~~p~v~~~~~g 167 (392)
T PRK07878 120 RLDPSNAVELFS-QYDLILDGTDNF--ATRYLVNDAA-VLAGKPYVWGSIYR 167 (392)
T ss_pred cCChhHHHHHHh-cCCEEEECCCCH--HHHHHHHHHH-HHcCCCEEEEEecc
Confidence 333333334332 456544333222 2222344555 56676665444443
No 330
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=88.11 E-value=1.9 Score=41.99 Aligned_cols=89 Identities=18% Similarity=0.094 Sum_probs=61.4
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCC-------------Cc---e---------ecC--ccccc--CHH
Q 020101 43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKG-------------GT---E---------HLG--LPVFN--TVA 92 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~-------------g~---~---------i~G--~p~y~--sl~ 92 (331)
+||+|-|. |++|+.++|.+.+. ++++++.-|+... |. + +.| ++++. +++
T Consensus 3 ~~i~inGf-GRIGr~~~r~~~~~~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~v~~~~dp~ 81 (331)
T PRK15425 3 IKVGINGF-GRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPA 81 (331)
T ss_pred eEEEEEee-ChHHHHHHHHHHHCCCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEEEEEcCChh
Confidence 68999999 99999999986654 6888854332210 00 0 123 22331 466
Q ss_pred Hhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 020101 93 EAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE 132 (331)
Q Consensus 93 dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~ 132 (331)
+++= +.++|+++.++......+.+...+++|.+.|++-++
T Consensus 82 ~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap 122 (331)
T PRK15425 82 NLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGP 122 (331)
T ss_pred hCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCC
Confidence 6653 247999999999998899999999999998665333
No 331
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=88.07 E-value=1.8 Score=40.82 Aligned_cols=88 Identities=15% Similarity=0.171 Sum_probs=57.3
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCE-EEEecChhhHHHHHHHH
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANA-SAIYVPPPFAAAAILEA 119 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDl-aii~vp~~~~~~~v~~~ 119 (331)
+..+++|.|||+.+|+..++.|.+.|++++ .|..+. +... ..+..+++--. .++++ .++.+-++....+.++.
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~~li-LvaR~~--~kL~--~la~~l~~~~~-v~v~vi~~DLs~~~~~~~l~~~l 78 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGYNLI-LVARRE--DKLE--ALAKELEDKTG-VEVEVIPADLSDPEALERLEDEL 78 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEE-EEeCcH--HHHH--HHHHHHHHhhC-ceEEEEECcCCChhHHHHHHHHH
Confidence 345677899999999999999999999988 777765 2211 12233333210 12222 23556677888888888
Q ss_pred HHc--CCcEEEEecCCCC
Q 020101 120 MEA--ELDLVVCITEGIP 135 (331)
Q Consensus 120 ~~~--Gi~~ivi~t~G~~ 135 (331)
.+. .|..+|+ ..||.
T Consensus 79 ~~~~~~IdvLVN-NAG~g 95 (265)
T COG0300 79 KERGGPIDVLVN-NAGFG 95 (265)
T ss_pred HhcCCcccEEEE-CCCcC
Confidence 887 5887554 66653
No 332
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=88.06 E-value=1.6 Score=38.77 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=26.0
Q ss_pred EEEEcCCCCCCcHHHHHHHHcCCeEEEEeCC
Q 020101 45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTP 75 (331)
Q Consensus 45 VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP 75 (331)
|+|+|++|-.|+.+++.|++.|++++.....
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~ 31 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRS 31 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESC
T ss_pred EEEEccCCHHHHHHHHHHHHcCCcccccccc
Confidence 5789999999999999999999997644443
No 333
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=87.89 E-value=4.5 Score=38.24 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=27.5
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEe
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGV 73 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~V 73 (331)
..+|+|.|++|-+|+.+++.|.+.|+++++.+
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~ 36 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGYTVKATV 36 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 35688999999999999999999999977544
No 334
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=87.86 E-value=1.8 Score=42.54 Aligned_cols=86 Identities=13% Similarity=0.021 Sum_probs=57.3
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHc-----CCeEEEEeCCCCCC---------ce-------------------------ec
Q 020101 43 TRVICQGITGKNGTFHTEQAIEY-----GTKMVGGVTPKKGG---------TE-------------------------HL 83 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~-----g~~iv~~VnP~~~g---------~~-------------------------i~ 83 (331)
+||+|-|. |++|+.+.|.+.+. ++++++..||...- +. +.
T Consensus 4 ikVgINGF-GRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~in 82 (361)
T PTZ00434 4 IKVGINGF-GRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLVVN 82 (361)
T ss_pred eEEEEECc-ChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEEEC
Confidence 68999999 99999999987653 57888666652110 00 12
Q ss_pred Cc--ccc---cCHHHhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEE
Q 020101 84 GL--PVF---NTVAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVC 129 (331)
Q Consensus 84 G~--p~y---~sl~dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi 129 (331)
|. +++ ++.+++|= +.++|+++-||-.-...+-+..-++.|.|.+++
T Consensus 83 g~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkVii 134 (361)
T PTZ00434 83 GHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVI 134 (361)
T ss_pred CEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEE
Confidence 22 233 24666652 247899998887666666666777788888665
No 335
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=87.71 E-value=1.3 Score=45.98 Aligned_cols=67 Identities=16% Similarity=0.260 Sum_probs=44.2
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-c--eecCccccc-C------HHHhhhcCCCCEEEEecChhhHH
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-T--EHLGLPVFN-T------VAEAKAETKANASAIYVPPPFAA 113 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~--~i~G~p~y~-s------l~dl~~~~~iDlaii~vp~~~~~ 113 (331)
.|+|+|+ |+.|+.+.+.|.+.|.+++ .||++... + +..|.+++. + ++++.- .+.|.++++++.+...
T Consensus 419 hiiI~G~-G~~G~~la~~L~~~g~~vv-vId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i-~~a~~viv~~~~~~~~ 495 (558)
T PRK10669 419 HALLVGY-GRVGSLLGEKLLAAGIPLV-VIETSRTRVDELRERGIRAVLGNAANEEIMQLAHL-DCARWLLLTIPNGYEA 495 (558)
T ss_pred CEEEECC-ChHHHHHHHHHHHCCCCEE-EEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCc-cccCEEEEEcCChHHH
Confidence 3678999 9999999999999999877 77766421 0 013444332 2 333222 2689888888875543
No 336
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=87.63 E-value=3.2 Score=34.90 Aligned_cols=91 Identities=12% Similarity=0.142 Sum_probs=52.5
Q ss_pred CCCcHHHHH-HHHcCCeEEE-EeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecCh----hhHHHHHHHHHHcCCcE
Q 020101 53 KNGTFHTEQ-AIEYGTKMVG-GVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP----PFAAAAILEAMEAELDL 126 (331)
Q Consensus 53 k~G~~~~~~-l~~~g~~iv~-~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~----~~~~~~v~~~~~~Gi~~ 126 (331)
..|..++.. |+..||+++. +++-.. -.-++.+.+ +++|++.++.-. +..+++++++.+.|...
T Consensus 16 d~g~~iv~~~l~~~GfeVi~lg~~~s~----------e~~v~aa~e-~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~ 84 (132)
T TIGR00640 16 DRGAKVIATAYADLGFDVDVGPLFQTP----------EEIARQAVE-ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPD 84 (132)
T ss_pred HHHHHHHHHHHHhCCcEEEECCCCCCH----------HHHHHHHHH-cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCC
Confidence 356555544 5557999773 121111 111344443 489999998754 45566667777777644
Q ss_pred EEEecCC-CChhHHHHHHHHHhccCCc-EEEccCC
Q 020101 127 VVCITEG-IPQHDMVRVKAALNNQSKT-RLVGPNC 159 (331)
Q Consensus 127 ivi~t~G-~~e~~~~~l~~~a~~~~gi-~viGPnc 159 (331)
+.++..| .++++.+++ ++.|+ ++++|.+
T Consensus 85 i~vivGG~~~~~~~~~l-----~~~Gvd~~~~~gt 114 (132)
T TIGR00640 85 ILVVVGGVIPPQDFDEL-----KEMGVAEIFGPGT 114 (132)
T ss_pred CEEEEeCCCChHhHHHH-----HHCCCCEEECCCC
Confidence 4445566 444444443 46787 5888875
No 337
>PLN02572 UDP-sulfoquinovose synthase
Probab=87.60 E-value=4.2 Score=40.95 Aligned_cols=31 Identities=19% Similarity=0.159 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEE
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVG 71 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~ 71 (331)
+..+|.|.|++|-+|+.+++.|.+.|++++.
T Consensus 46 ~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~ 76 (442)
T PLN02572 46 KKKKVMVIGGDGYCGWATALHLSKRGYEVAI 76 (442)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCCeEEE
Confidence 3456899999999999999999999998773
No 338
>PRK10949 protease 4; Provisional
Probab=87.54 E-value=2 Score=45.31 Aligned_cols=87 Identities=16% Similarity=0.116 Sum_probs=50.7
Q ss_pred CHHHHHHHhhcCCCccEEEEEEccC-CCcHHHHHHHHHH---hC-CCCCEEEEEeCCCCCCCCC-CCC--------Cccc
Q 020101 222 NFVDCVTKFIADPQTEGIILIGEIG-GTAEEDAAALIKE---SG-TEKPIVAFIAGLTAPPGRR-MGH--------AGAI 287 (331)
Q Consensus 222 ~~~d~l~~l~~Dp~T~~I~ly~E~~-g~~~~~~~~f~~a---~r-~~KPVvv~k~Grs~~~g~~-~sH--------tga~ 287 (331)
++.+.|+...+||+++.|++.+.+. |.......+..++ .| .+|||+++--.-+.. +.- +|| +|++
T Consensus 99 div~~i~~Aa~D~rIkgivL~i~s~gG~~~a~~~eI~~ai~~fk~sGKpVvA~~~~~~s~-~YyLASaAD~I~l~P~G~v 177 (618)
T PRK10949 99 DIVNTIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKALREFRDSGKPVYAVGDSYSQG-QYYLASFANKIYLSPQGVV 177 (618)
T ss_pred HHHHHHHHHhcCCCceEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEEecCccch-hhhhhhhCCEEEECCCceE
Confidence 3445556667999999999999986 3333233333333 34 689999984333222 221 333 4444
Q ss_pred ccCCCC-CHHHHHHHHHHcCCeE
Q 020101 288 VSGGKG-TAQDKIKTLREAGVTV 309 (331)
Q Consensus 288 a~~~~g-~~~~~~a~~~~aGv~~ 309 (331)
...+-. ...-+..+|++.||-.
T Consensus 178 ~~~G~~~~~~~~k~lLdKlGV~~ 200 (618)
T PRK10949 178 DLHGFATNGLYYKSLLDKLKVST 200 (618)
T ss_pred EEeeeecchhhHHHHHHHcCCeE
Confidence 322112 2234579999999874
No 339
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=87.50 E-value=2.2 Score=41.77 Aligned_cols=86 Identities=16% Similarity=0.125 Sum_probs=61.1
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCC----------C---Cc---e---------ecC--cccc--cCHH
Q 020101 43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKK----------G---GT---E---------HLG--LPVF--NTVA 92 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~----------~---g~---~---------i~G--~p~y--~sl~ 92 (331)
+||+|-|. |++|+.++|.+.+. ++++++.-|+.. + |. + +.| ++++ ++.+
T Consensus 3 ~ki~INGf-GRIGR~~~r~~~~~~~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~v~~~~dp~ 81 (343)
T PRK07729 3 TKVAINGF-GRIGRMVFRKAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIRLLNNRDPK 81 (343)
T ss_pred eEEEEECc-ChHHHHHHHHHhhcCCcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcCChh
Confidence 68999999 99999999986654 688884433311 0 00 0 123 2333 2567
Q ss_pred Hhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEE
Q 020101 93 EAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVC 129 (331)
Q Consensus 93 dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi 129 (331)
+++= +.++|+++.++......+.+...+++|.+.|++
T Consensus 82 ~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~i 119 (343)
T PRK07729 82 ELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVIL 119 (343)
T ss_pred hCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEe
Confidence 7763 247999999999999999999999999998664
No 340
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=87.45 E-value=2.6 Score=36.99 Aligned_cols=33 Identities=18% Similarity=0.033 Sum_probs=26.3
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 77 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~ 77 (331)
+|+|+|+ |-+|..++++|...|+.-+..+|+..
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 4789999 88999999999998885333777654
No 341
>PTZ00325 malate dehydrogenase; Provisional
Probab=87.42 E-value=3.9 Score=39.66 Aligned_cols=91 Identities=13% Similarity=-0.005 Sum_probs=54.8
Q ss_pred CCCeEEEEEcCCCCCCcHHHHHHHHcC--CeEEEEeCCCC-CCceec------Ccccc--cC---HHHhhhcCCCCEEEE
Q 020101 40 DKNTRVICQGITGKNGTFHTEQAIEYG--TKMVGGVTPKK-GGTEHL------GLPVF--NT---VAEAKAETKANASAI 105 (331)
Q Consensus 40 ~k~~~VaIvGasgk~G~~~~~~l~~~g--~~iv~~VnP~~-~g~~i~------G~p~y--~s---l~dl~~~~~iDlaii 105 (331)
.|+.||+|+|+.|+.|+.+...+...+ .+++ .+|... .++..+ ...+. .+ ..+... +.|++|+
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elv-L~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~--gaDvVVi 82 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELS-LYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALR--GADLVLI 82 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEE-EEecCCCcccccchhhcCcCceEEEecCCCchHHHhC--CCCEEEE
Confidence 466789999999999999888777544 4555 555422 221110 11222 11 123333 6899997
Q ss_pred ecCh--h--------------hHHHHHHHHHHcCCcEEEEecCC
Q 020101 106 YVPP--P--------------FAAAAILEAMEAELDLVVCITEG 133 (331)
Q Consensus 106 ~vp~--~--------------~~~~~v~~~~~~Gi~~ivi~t~G 133 (331)
+.-. . .+.++++.+.++|++.+++.++.
T Consensus 83 taG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SN 126 (321)
T PTZ00325 83 CAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSN 126 (321)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 7533 1 23446667778899988776653
No 342
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=87.41 E-value=17 Score=35.13 Aligned_cols=146 Identities=12% Similarity=0.051 Sum_probs=84.3
Q ss_pred ecChhhHHHHHHHHHHcCCcEEEEecCCCChh--HHHHHHHHHhccCCcEEEccCCCC--cccCCCccccc--CCC----
Q 020101 106 YVPPPFAAAAILEAMEAELDLVVCITEGIPQH--DMVRVKAALNNQSKTRLVGPNCPG--VIKPGECKIGI--MPG---- 175 (331)
Q Consensus 106 ~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~--~~~~l~~~a~~~~gi~viGPnc~G--i~~p~~~~~~~--~~~---- 175 (331)
..|++.+..+++++++.|+-.++....+-+.. ....+...+ ...++.+|.|.+-. +-+.......| .|.
T Consensus 63 ~~~~~~a~~~~~~Li~~~V~aii~~~~~ss~~~~~~~~v~~~~-~~~~iP~Is~~a~~~~ls~~~~~~~~~R~~psd~~~ 141 (377)
T cd06379 63 PNPIQTALSVCEQLISNQVYAVIVSHPPTSNDHLTPTSVSYTA-GFYRIPVVGISTRDSIFSDKNIHLSFLRTVPPYSHQ 141 (377)
T ss_pred CChhhHHHHHHHHHhhcceEEEEEeCCCCCcccccHHHHHHHh-hCCCCcEEecccCCccccCccccccEEEecCCHHHH
Confidence 46777778888888887777654312211212 122333444 67889988876422 11111111111 111
Q ss_pred --------CCCCCCCEEEEecChHHH----HHHHHHHHhCCC----CceEEEecCCCCCCCCCHHHHHHHhhcCCCccEE
Q 020101 176 --------YIHKPGRIGIVSRSGTLT----YEAVFQTTAVGL----GQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGI 239 (331)
Q Consensus 176 --------~~~~~G~valisQSG~~~----~~~~~~~~~~g~----g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I 239 (331)
..+..-.|++|.++...+ ..+...+++.|+ -+......-.. +.++...+..+.. .+.++|
T Consensus 142 ~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~---~~d~~~~l~~ik~-~~~~vI 217 (377)
T cd06379 142 ADVWLEMLRSFKWNKVILLVSDDHEGRAAQKRFETLLEEREIEFKIKVEKVVEFEPG---EKNVTSLLQEAKE-LTSRVI 217 (377)
T ss_pred HHHHHHHHHHcCCeEEEEEEEcCcchhHHHHHHHHHHHhcCCccceeeeEEEecCCc---hhhHHHHHHHHhh-cCCeEE
Confidence 124556899999987743 344456666776 44444334222 4567778887754 567888
Q ss_pred EEEEccCCCcHHHHHHHHHHhC
Q 020101 240 ILIGEIGGTAEEDAAALIKESG 261 (331)
Q Consensus 240 ~ly~E~~g~~~~~~~~f~~a~r 261 (331)
+++.. ..++..|+++++
T Consensus 218 vl~~~-----~~~~~~l~~qa~ 234 (377)
T cd06379 218 LLSAS-----EDDAAVIYRNAG 234 (377)
T ss_pred EEEcC-----HHHHHHHHHHHH
Confidence 88866 367888998875
No 343
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=87.37 E-value=0.6 Score=46.78 Aligned_cols=73 Identities=23% Similarity=0.305 Sum_probs=49.6
Q ss_pred cccccCC-CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc-e---ecCc--ccccCHHHhhhcCCCCEEEEe
Q 020101 34 APAVFVD-KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-E---HLGL--PVFNTVAEAKAETKANASAIY 106 (331)
Q Consensus 34 l~~ll~~-k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~-~---i~G~--p~y~sl~dl~~~~~iDlaii~ 106 (331)
..++|.+ +..+|.|||| |.||..+++.|.+.|+.-+..+|...... + -.|. -.|+.+.+... +.|+++.+
T Consensus 169 A~~~~~~L~~~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~--~~DvViss 245 (414)
T COG0373 169 AKRIFGSLKDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALA--EADVVISS 245 (414)
T ss_pred HHHHhcccccCeEEEEcc-cHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhh--hCCEEEEe
Confidence 3456643 6788999999 99999999999999977555899886311 1 1231 12233444444 68999988
Q ss_pred cCh
Q 020101 107 VPP 109 (331)
Q Consensus 107 vp~ 109 (331)
|..
T Consensus 246 Tsa 248 (414)
T COG0373 246 TSA 248 (414)
T ss_pred cCC
Confidence 754
No 344
>PLN02206 UDP-glucuronate decarboxylase
Probab=87.33 E-value=1.9 Score=43.43 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=31.1
Q ss_pred cCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEe
Q 020101 38 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGV 73 (331)
Q Consensus 38 l~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~V 73 (331)
+.+|.++|+|.|++|-+|+.+++.|.+.|+++++..
T Consensus 115 ~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld 150 (442)
T PLN02206 115 LKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVD 150 (442)
T ss_pred cccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEe
Confidence 356778999999999999999999999999988443
No 345
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=87.27 E-value=1.2 Score=44.64 Aligned_cols=37 Identities=27% Similarity=0.280 Sum_probs=30.9
Q ss_pred CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCC
Q 020101 40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK 76 (331)
Q Consensus 40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~ 76 (331)
.+...|.|+||+|+.|+.+.+.|++.||.+.+.|-..
T Consensus 77 ~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~ 113 (411)
T KOG1203|consen 77 KKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDE 113 (411)
T ss_pred CCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccCh
Confidence 4567789999999999999999999999877555443
No 346
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=87.22 E-value=2.5 Score=41.30 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=28.4
Q ss_pred CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101 40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 77 (331)
Q Consensus 40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~ 77 (331)
.+..+|+|+|+ |-.|...++..+..|.+++ .++.+.
T Consensus 165 ~pG~~V~I~G~-GGlGh~avQ~Aka~ga~Vi-a~~~~~ 200 (339)
T COG1064 165 KPGKWVAVVGA-GGLGHMAVQYAKAMGAEVI-AITRSE 200 (339)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHcCCeEE-EEeCCh
Confidence 34677999999 6788888999998999988 555443
No 347
>PLN02427 UDP-apiose/xylose synthase
Probab=87.15 E-value=2.9 Score=40.84 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEE
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGG 72 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~ 72 (331)
+.++|.|.|++|-+|+.+++.|.+. |+++++.
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l 45 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETPHKVLAL 45 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCCCEEEEE
Confidence 4567999999999999999999987 5887743
No 348
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=87.04 E-value=1.6 Score=46.09 Aligned_cols=81 Identities=20% Similarity=0.201 Sum_probs=51.3
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC--CC-ceecCccccc-C--HHHhhhc---CCCCEEEEecChhh-
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK--GG-TEHLGLPVFN-T--VAEAKAE---TKANASAIYVPPPF- 111 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~--~g-~~i~G~p~y~-s--l~dl~~~---~~iDlaii~vp~~~- 111 (331)
..+|+|+|+ |+.|+.+.+.|.+.|++++ .+|.+. .. -.-.|.++|. + =.|+.++ .+.|++|++++.+.
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~~vv-vID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~ 477 (621)
T PRK03562 400 QPRVIIAGF-GRFGQIVGRLLLSSGVKMT-VLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQT 477 (621)
T ss_pred cCcEEEEec-ChHHHHHHHHHHhCCCCEE-EEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHH
Confidence 356889999 9999999999999998876 555443 10 0124666553 2 1122221 36899999987744
Q ss_pred HHHHHHHHHHcCC
Q 020101 112 AAAAILEAMEAEL 124 (331)
Q Consensus 112 ~~~~v~~~~~~Gi 124 (331)
...++..+-+...
T Consensus 478 n~~i~~~ar~~~p 490 (621)
T PRK03562 478 SLQLVELVKEHFP 490 (621)
T ss_pred HHHHHHHHHHhCC
Confidence 4555566655543
No 349
>PRK06223 malate dehydrogenase; Reviewed
Probab=86.95 E-value=7.2 Score=37.02 Aligned_cols=84 Identities=14% Similarity=0.109 Sum_probs=50.3
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCC-eEEEEeCCCCC---Cce--e------cC--ccc--ccCHHHhhhcCCCCEEEEe
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKG---GTE--H------LG--LPV--FNTVAEAKAETKANASAIY 106 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~-~iv~~VnP~~~---g~~--i------~G--~p~--y~sl~dl~~~~~iDlaii~ 106 (331)
.||+|||+ |.+|..+...+...|. +++ .+|.... +.. . .+ .++ ..+.+++ . +.|++|++
T Consensus 3 ~KI~VIGa-G~vG~~ia~~la~~~~~ev~-L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~~-~--~aDiVii~ 77 (307)
T PRK06223 3 KKISIIGA-GNVGATLAHLLALKELGDVV-LFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYEDI-A--GSDVVVIT 77 (307)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEE-EEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHHH-C--CCCEEEEC
Confidence 57899999 9999998888777654 655 6565331 100 0 01 111 2345554 3 68999988
Q ss_pred cC--h--------------hhHHHHHHHHHHcCCcEEEEec
Q 020101 107 VP--P--------------PFAAAAILEAMEAELDLVVCIT 131 (331)
Q Consensus 107 vp--~--------------~~~~~~v~~~~~~Gi~~ivi~t 131 (331)
.. . +...+++++..+...+.+++..
T Consensus 78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~ 118 (307)
T PRK06223 78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVV 118 (307)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 52 2 3456666666677666644433
No 350
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=86.89 E-value=0.89 Score=43.99 Aligned_cols=88 Identities=9% Similarity=0.005 Sum_probs=58.8
Q ss_pred CCCCeEEEEEcCCCCCCcHHHHHHHH-cCCeEEEEeCCCCCCce-------ecC--cccccCHHHhhhcCCCCEEEEecC
Q 020101 39 VDKNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGGTE-------HLG--LPVFNTVAEAKAETKANASAIYVP 108 (331)
Q Consensus 39 ~~k~~~VaIvGasgk~G~~~~~~l~~-~g~~iv~~VnP~~~g~~-------i~G--~p~y~sl~dl~~~~~iDlaii~vp 108 (331)
.+...+++|||+ |.+++.+++.+.. ..++-+...|+.....+ -.| +.++.+.+++.+ +.|+++.+||
T Consensus 125 ~~~~~~lgiiG~-G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~--~aDiVitaT~ 201 (325)
T TIGR02371 125 RKDSSVLGIIGA-GRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVE--GCDILVTTTP 201 (325)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhc--cCCEEEEecC
Confidence 455688999999 9999998887765 34554556676652111 125 345678999887 7999999998
Q ss_pred hhhHHHHHHHHHHcCCcEEEEe
Q 020101 109 PPFAAAAILEAMEAELDLVVCI 130 (331)
Q Consensus 109 ~~~~~~~v~~~~~~Gi~~ivi~ 130 (331)
... +-+-.+.++.|.+..-+.
T Consensus 202 s~~-P~~~~~~l~~g~~v~~vG 222 (325)
T TIGR02371 202 SRK-PVVKADWVSEGTHINAIG 222 (325)
T ss_pred CCC-cEecHHHcCCCCEEEecC
Confidence 643 222245567787754443
No 351
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=86.88 E-value=3.3 Score=39.81 Aligned_cols=233 Identities=21% Similarity=0.280 Sum_probs=106.5
Q ss_pred eCCCCCCcee-------cCcccccCHHHhhhcCCCCEEEEecCh------hhHHHHHHHHHHcCCcEEEEecCCCC--hh
Q 020101 73 VTPKKGGTEH-------LGLPVFNTVAEAKAETKANASAIYVPP------PFAAAAILEAMEAELDLVVCITEGIP--QH 137 (331)
Q Consensus 73 VnP~~~g~~i-------~G~p~y~sl~dl~~~~~iDlaii~vp~------~~~~~~v~~~~~~Gi~~ivi~t~G~~--e~ 137 (331)
+|++..|++. .|+|+|.++++... ++|.+|+-+-+ +...+.+.+|+++|... + +|+- -+
T Consensus 1 ID~~~aG~~a~e~~~~~~~iPi~~~~~~a~~--~~~~liiGiA~~GG~lp~~w~~~i~~Ai~~Gl~I-v---sGLH~~L~ 74 (301)
T PF07755_consen 1 IDSRLAGKDAGEVLGGKRGIPIVASLEEAAA--GADTLIIGIAPAGGRLPPSWRPVILEAIEAGLDI-V---SGLHDFLS 74 (301)
T ss_dssp E-TTTTTSBHHHCCSSSS--BEESSHHHHHC--T-SEEEE---STTHCCHCCHHHHHHHHHHTT-EE-E---E-SSS-HC
T ss_pred CCcccCCCcHHHhcCCCCCCCccCCHHHHhc--CCCEEEEecCcCCCcCCHHHHHHHHHHHHcCCCE-E---ecChhhhc
Confidence 3555555443 78999999999943 89999987743 34568999999999886 3 3332 33
Q ss_pred HHHHHHHHHhccCCcEEEccCCCCcccCC-CcccccCCCCC--CCCCCEEEEecCh---HHHHH--HHHHHHhCCCCceE
Q 020101 138 DMVRVKAALNNQSKTRLVGPNCPGVIKPG-ECKIGIMPGYI--HKPGRIGIVSRSG---TLTYE--AVFQTTAVGLGQST 209 (331)
Q Consensus 138 ~~~~l~~~a~~~~gi~viGPnc~Gi~~p~-~~~~~~~~~~~--~~~G~valisQSG---~~~~~--~~~~~~~~g~g~s~ 209 (331)
+-.++.++| +++|.+++--.- |. .. .+..+.. ...=.|..+..+- =+.++ +...++++|+. +.
T Consensus 75 ddpel~~~A-~~~g~~i~DvR~-----p~~~~--~~~~g~~~~~~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~-a~ 145 (301)
T PF07755_consen 75 DDPELAAAA-KKNGVRIIDVRK-----PPKDL--PVASGRIREVKAKRVLTVGTDCAVGKMTTALELRRALRERGIN-AG 145 (301)
T ss_dssp CHHHHHCCH-HCCT--EEETTS-------SS-------SGGGG-SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT---EE
T ss_pred cCHHHHHHH-HHcCCeEeeccC-----CCccc--ccccCccccCCCCEEEEEccCccccHHHHHHHHHHHHHHcCCC-ce
Confidence 445677766 788988775442 21 11 1111111 1222477776554 34443 45677778764 45
Q ss_pred EEecCCCC--------CCCCC--------HHHHHHHhhcCCCccEEEEEEccC-CCcHHH--HHHHHHHhCCCCCEEEEE
Q 020101 210 CVGIGGDP--------FNGTN--------FVDCVTKFIADPQTEGIILIGEIG-GTAEED--AAALIKESGTEKPIVAFI 270 (331)
Q Consensus 210 ~vs~Gn~~--------~~~v~--------~~d~l~~l~~Dp~T~~I~ly~E~~-g~~~~~--~~~f~~a~r~~KPVvv~k 270 (331)
|++||... -.|-- .+.++....+ ++ ..|++-..+. -.+-.. .-.++.-.+...=|++..
T Consensus 146 fvaTGQTGimia~~Gv~iDav~~DFvaGavE~~v~~~~~-~~-d~ivVEGQgsL~hPay~gvsl~lL~Gs~Pd~lVL~H~ 223 (301)
T PF07755_consen 146 FVATGQTGIMIAGYGVPIDAVPSDFVAGAVEALVPEAAE-EH-DWIVVEGQGSLSHPAYSGVSLGLLHGSQPDALVLCHA 223 (301)
T ss_dssp EEE-SHHHHHCHSEC--GGGSBGGGHHHHHHHHHHHHCC-C--SEEEEE--S-TTSTTTHHCHHHHHHHH--SEEEEEEE
T ss_pred EEecCCceEEEecCCeeccchhhhhHHHHHHHHHHhhCc-CC-CEEEEeccccccCccccccchhhhccCCCCeEEEEec
Confidence 77777541 01111 1233333443 44 7776655541 111101 123444444555566777
Q ss_pred eCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeE---------e----CCHhHHHHHHHHHHHhcCCC
Q 020101 271 AGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTV---------V----ESPAKIGAAMLEVFKQRGLT 330 (331)
Q Consensus 271 ~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~---------v----~~~~el~~~~~a~~~~~~~~ 330 (331)
+||..-.+ +-|. .+ -+-+...++.++..-.. . -+.+|..+.++.+-+++||.
T Consensus 224 p~r~~~~~--~p~~-~i-----p~l~~~I~l~e~la~~~~~~~VvgIslNt~~l~~~e~~~~~~~~~~e~glP 288 (301)
T PF07755_consen 224 PGRKHRDG--FPHY-PI-----PPLEEEIELIEALAGTKPPAKVVGISLNTSGLSEEEAKAAIERIEEELGLP 288 (301)
T ss_dssp TT-SC-TT--STTS-C--------HHHHHHHHHHCCCGC---EEEEEECC-TTS-HHHHHHHHHHHHHHH-S-
T ss_pred CCcccccC--CCcC-CC-----CCHHHHHHHHHHhhccCCCccEEEEEEECCCCCHHHHHHHHHHHHHHHCCC
Confidence 77765411 2221 11 12233344444444432 1 23456666666655666663
No 352
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.75 E-value=5.5 Score=38.77 Aligned_cols=98 Identities=19% Similarity=0.218 Sum_probs=68.3
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHHH
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAM 120 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~ 120 (331)
....|.|+|+-| +|+...+....+|++++ .++-... + =+|..+....|.-++++-.....+.+.++.
T Consensus 181 pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~-vis~~~~-k----------keea~~~LGAd~fv~~~~d~d~~~~~~~~~ 247 (360)
T KOG0023|consen 181 PGKWVGIVGLGG-LGHMAVQYAKAMGMRVT-VISTSSK-K----------KEEAIKSLGADVFVDSTEDPDIMKAIMKTT 247 (360)
T ss_pred CCcEEEEecCcc-cchHHHHHHHHhCcEEE-EEeCCch-h----------HHHHHHhcCcceeEEecCCHHHHHHHHHhh
Confidence 467789999955 99999999999999988 6664431 1 234444446799999995556666678888
Q ss_pred HcCCcEEEEecCCCChhHHHHHHHHHhccCC-cEEEc
Q 020101 121 EAELDLVVCITEGIPQHDMVRVKAALNNQSK-TRLVG 156 (331)
Q Consensus 121 ~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~g-i~viG 156 (331)
+-+++.+.++ ++...+.+.+++ |..| +-++|
T Consensus 248 dg~~~~v~~~----a~~~~~~~~~~l-k~~Gt~V~vg 279 (360)
T KOG0023|consen 248 DGGIDTVSNL----AEHALEPLLGLL-KVNGTLVLVG 279 (360)
T ss_pred cCcceeeeec----cccchHHHHHHh-hcCCEEEEEe
Confidence 9999997776 344445555566 5666 34444
No 353
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=86.70 E-value=1.7 Score=42.78 Aligned_cols=36 Identities=22% Similarity=0.192 Sum_probs=28.8
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 77 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~ 77 (331)
+..+|+|+|+ |-.|..++++|...|..-+..||+..
T Consensus 134 ~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d~ 169 (376)
T PRK08762 134 LEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHDV 169 (376)
T ss_pred hcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 4567899999 88999999999999985334788764
No 354
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.70 E-value=1.1 Score=45.51 Aligned_cols=87 Identities=17% Similarity=0.200 Sum_probs=50.5
Q ss_pred cccccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc----eecCcccccC--HHHhhhcCCCCEEEEec
Q 020101 34 APAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT----EHLGLPVFNT--VAEAKAETKANASAIYV 107 (331)
Q Consensus 34 l~~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~----~i~G~p~y~s--l~dl~~~~~iDlaii~v 107 (331)
|+.+..-...+|.|+|+ |+.|..+++.|.+.|+++. +.|.+.... +..|++++.. -.+... ++|++|..-
T Consensus 7 ~~~~~~~~~~~v~v~G~-G~sG~a~a~~L~~~G~~V~-~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~--~~d~vV~Sp 82 (473)
T PRK00141 7 LSALPQELSGRVLVAGA-GVSGRGIAAMLSELGCDVV-VADDNETARHKLIEVTGVADISTAEASDQLD--SFSLVVTSP 82 (473)
T ss_pred hhhcccccCCeEEEEcc-CHHHHHHHHHHHHCCCEEE-EECCChHHHHHHHHhcCcEEEeCCCchhHhc--CCCEEEeCC
Confidence 45544334456889998 9999999999999999766 666432101 1236666532 122222 467766542
Q ss_pred --ChhhHHHHHHHHHHcCCcE
Q 020101 108 --PPPFAAAAILEAMEAELDL 126 (331)
Q Consensus 108 --p~~~~~~~v~~~~~~Gi~~ 126 (331)
|+ .. ..+.+|.++|++.
T Consensus 83 gi~~-~~-p~~~~a~~~gi~v 101 (473)
T PRK00141 83 GWRP-DS-PLLVDAQSQGLEV 101 (473)
T ss_pred CCCC-CC-HHHHHHHHCCCce
Confidence 22 22 3455666666643
No 355
>PLN02650 dihydroflavonol-4-reductase
Probab=86.65 E-value=4.3 Score=38.99 Aligned_cols=32 Identities=19% Similarity=0.300 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEE
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGG 72 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~ 72 (331)
.+.+|+|.|++|-+|+.+++.|.+.|+++++.
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~ 35 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGYTVRAT 35 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEE
Confidence 34578999999999999999999999997743
No 356
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.63 E-value=2 Score=41.16 Aligned_cols=76 Identities=11% Similarity=0.101 Sum_probs=54.0
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHHH
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAM 120 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~ 120 (331)
+..+|+|||-|+.||+.++.+|.+.|+++. ..|.+. . +++++.. +.|+++.+++.....+. ..+
T Consensus 157 ~Gk~V~viGrs~~mG~PmA~~L~~~g~tVt-v~~~rT--~---------~l~e~~~--~ADIVIsavg~~~~v~~--~~l 220 (296)
T PRK14188 157 SGLNAVVIGRSNLVGKPMAQLLLAANATVT-IAHSRT--R---------DLPAVCR--RADILVAAVGRPEMVKG--DWI 220 (296)
T ss_pred CCCEEEEEcCCcchHHHHHHHHHhCCCEEE-EECCCC--C---------CHHHHHh--cCCEEEEecCChhhcch--hee
Confidence 567789999999999999999999999877 665332 1 4677776 78999999987664332 224
Q ss_pred HcCCcEEEEecCCCC
Q 020101 121 EAELDLVVCITEGIP 135 (331)
Q Consensus 121 ~~Gi~~ivi~t~G~~ 135 (331)
+.|. +++--|++
T Consensus 221 k~Ga---vVIDvGin 232 (296)
T PRK14188 221 KPGA---TVIDVGIN 232 (296)
T ss_pred cCCC---EEEEcCCc
Confidence 4442 33445654
No 357
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=86.42 E-value=2.1 Score=39.38 Aligned_cols=37 Identities=16% Similarity=0.209 Sum_probs=29.2
Q ss_pred CCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101 39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 77 (331)
Q Consensus 39 ~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~ 77 (331)
..+..+|+|||+ |+.+..=++.|++.|.++. .|.|.-
T Consensus 22 ~~~~~~VLVVGG-G~VA~RK~~~Ll~~gA~Vt-VVap~i 58 (223)
T PRK05562 22 LSNKIKVLIIGG-GKAAFIKGKTFLKKGCYVY-ILSKKF 58 (223)
T ss_pred ECCCCEEEEECC-CHHHHHHHHHHHhCCCEEE-EEcCCC
Confidence 556788999999 7777666678888898876 888865
No 358
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=86.37 E-value=3.4 Score=39.46 Aligned_cols=89 Identities=16% Similarity=0.106 Sum_probs=54.0
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcC--CeEEEEeCCCCCCc-----ee--cCccc-------ccCHHHhhhcCCCCEEEE
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYG--TKMVGGVTPKKGGT-----EH--LGLPV-------FNTVAEAKAETKANASAI 105 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g--~~iv~~VnP~~~g~-----~i--~G~p~-------y~sl~dl~~~~~iDlaii 105 (331)
..+|+|.|++|-+|+.+++.|.+.| .+++ .++...... .. ..+.. ..++.++.+ ++|+++-
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~-~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~--~iD~Vih 80 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPKKII-IYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALR--GVDYVVH 80 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEE-EEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHh--cCCEEEE
Confidence 3568899999999999999988765 5666 333211000 00 01111 223445454 6899886
Q ss_pred ecCh------------------hhHHHHHHHHHHcCCcEEEEecCC
Q 020101 106 YVPP------------------PFAAAAILEAMEAELDLVVCITEG 133 (331)
Q Consensus 106 ~vp~------------------~~~~~~v~~~~~~Gi~~ivi~t~G 133 (331)
+... .....+++.|.+.|++.++.+++.
T Consensus 81 ~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS~ 126 (324)
T TIGR03589 81 AAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTD 126 (324)
T ss_pred CcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 5321 124456777888898887777753
No 359
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=86.35 E-value=5.7 Score=33.62 Aligned_cols=94 Identities=19% Similarity=0.192 Sum_probs=54.1
Q ss_pred CCcHHHH-HHHHcCCeEEE-EeCCCCCCceecCcccccCHHHhhhcCCCCEEEEec----ChhhHHHHHHHHHHcCCcEE
Q 020101 54 NGTFHTE-QAIEYGTKMVG-GVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYV----PPPFAAAAILEAMEAELDLV 127 (331)
Q Consensus 54 ~G~~~~~-~l~~~g~~iv~-~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~v----p~~~~~~~v~~~~~~Gi~~i 127 (331)
.|..+.. .|++.||+++. +++-.. ++ =++.+.+ +++|++-+.. .-....++++.+-++|.+.+
T Consensus 16 iGk~iv~~~l~~~GfeVi~LG~~v~~--e~--------~v~aa~~-~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~ 84 (134)
T TIGR01501 16 VGNKILDHAFTNAGFNVVNLGVLSPQ--EE--------FIKAAIE-TKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGI 84 (134)
T ss_pred HhHHHHHHHHHHCCCEEEECCCCCCH--HH--------HHHHHHH-cCCCEEEEecccccCHHHHHHHHHHHHHCCCCCC
Confidence 5666554 45567999873 233221 11 1344443 4899877654 23346667777878887444
Q ss_pred EEecCC---CChhHHHHHHHHHhccCCcE-EEccCC
Q 020101 128 VCITEG---IPQHDMVRVKAALNNQSKTR-LVGPNC 159 (331)
Q Consensus 128 vi~t~G---~~e~~~~~l~~~a~~~~gi~-viGPnc 159 (331)
.++-.| +++++..+..+.+ ++.|+. +.+|.+
T Consensus 85 ~vivGG~~vi~~~d~~~~~~~l-~~~Gv~~vF~pgt 119 (134)
T TIGR01501 85 LLYVGGNLVVGKQDFPDVEKRF-KEMGFDRVFAPGT 119 (134)
T ss_pred EEEecCCcCcChhhhHHHHHHH-HHcCCCEEECcCC
Confidence 444455 4566655444444 677764 777764
No 360
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=86.32 E-value=2.3 Score=38.59 Aligned_cols=31 Identities=26% Similarity=0.332 Sum_probs=26.5
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCC
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTP 75 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP 75 (331)
+|+|+|++|..|..+++.+.+.|++++ .++.
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~~V~-~~~r 32 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGHKVI-ATGR 32 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEE-EEEC
Confidence 578899999999999999999999976 5544
No 361
>PLN02778 3,5-epimerase/4-reductase
Probab=86.29 E-value=3.4 Score=39.11 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=27.2
Q ss_pred CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEE
Q 020101 40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMV 70 (331)
Q Consensus 40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv 70 (331)
++.++|.|.|++|-+|+.+.+.|.+.|++++
T Consensus 7 ~~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~ 37 (298)
T PLN02778 7 SATLKFLIYGKTGWIGGLLGKLCQEQGIDFH 37 (298)
T ss_pred CCCCeEEEECCCCHHHHHHHHHHHhCCCEEE
Confidence 3457899999999999999999999999876
No 362
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=86.26 E-value=2.2 Score=42.10 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=28.5
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 77 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~ 77 (331)
+..+|+|+|+ |-.|..++++|...|..-+..+|+..
T Consensus 40 ~~~~VliiG~-GglG~~v~~~La~~Gvg~i~ivD~D~ 75 (370)
T PRK05600 40 HNARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 4567899999 88999999999999875333777764
No 363
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=86.13 E-value=3.7 Score=38.27 Aligned_cols=92 Identities=15% Similarity=0.160 Sum_probs=50.6
Q ss_pred HHHHHHcC--CeEEEEeCCCCCCce---ecCcc--cccCHHHhhhcCCCCEEEEecChhhHHHHHHHHHH-cCCcEEEEe
Q 020101 59 TEQAIEYG--TKMVGGVTPKKGGTE---HLGLP--VFNTVAEAKAETKANASAIYVPPPFAAAAILEAME-AELDLVVCI 130 (331)
Q Consensus 59 ~~~l~~~g--~~iv~~VnP~~~g~~---i~G~p--~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~-~Gi~~ivi~ 130 (331)
.+.|++.| ++++ ++|++....+ -.|+- .+.+.+. .. +.|++|+++|.+...+++++... .+...+|.=
T Consensus 2 A~aL~~~g~~~~v~-g~d~~~~~~~~a~~~g~~~~~~~~~~~-~~--~~DlvvlavP~~~~~~~l~~~~~~~~~~~iv~D 77 (258)
T PF02153_consen 2 ALALRKAGPDVEVY-GYDRDPETLEAALELGIIDEASTDIEA-VE--DADLVVLAVPVSAIEDVLEEIAPYLKPGAIVTD 77 (258)
T ss_dssp HHHHHHTTTTSEEE-EE-SSHHHHHHHHHTTSSSEEESHHHH-GG--CCSEEEE-S-HHHHHHHHHHHHCGS-TTSEEEE
T ss_pred hHHHHhCCCCeEEE-EEeCCHHHHHHHHHCCCeeeccCCHhH-hc--CCCEEEEcCCHHHHHHHHHHhhhhcCCCcEEEE
Confidence 45677777 5566 8887652111 13432 3334344 44 68999999999999999999988 445554543
Q ss_pred cCCCChhHHHHHHHHHhccCCcEEEc
Q 020101 131 TEGIPQHDMVRVKAALNNQSKTRLVG 156 (331)
Q Consensus 131 t~G~~e~~~~~l~~~a~~~~gi~viG 156 (331)
..+....-...+.+.. ..+.+++|
T Consensus 78 v~SvK~~~~~~~~~~~--~~~~~~v~ 101 (258)
T PF02153_consen 78 VGSVKAPIVEAMERLL--PEGVRFVG 101 (258)
T ss_dssp --S-CHHHHHHHHHHH--TSSGEEEE
T ss_pred eCCCCHHHHHHHHHhc--Ccccceee
Confidence 3444443344444443 24566664
No 364
>PRK12483 threonine dehydratase; Reviewed
Probab=86.13 E-value=3.9 Score=42.29 Aligned_cols=159 Identities=19% Similarity=0.233 Sum_probs=85.4
Q ss_pred ccCHHHhhhcCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCC--cEEEccCCCCcccC
Q 020101 88 FNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSK--TRLVGPNCPGVIKP 165 (331)
Q Consensus 88 y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~g--i~viGPnc~Gi~~p 165 (331)
|..+..+.++....-+|-++....++.+.-.|...|++..+++..+.++.-...+ +.+| +.+.|++.-.-+.-
T Consensus 73 ~n~i~~l~~~~~~~GVV~aSaGNha~gvA~aA~~lGi~~~IvmP~~tp~~Kv~~~-----r~~GAeVil~g~~~d~a~~~ 147 (521)
T PRK12483 73 YNKMARLPAEQLARGVITASAGNHAQGVALAAARLGVKAVIVMPRTTPQLKVDGV-----RAHGGEVVLHGESFPDALAH 147 (521)
T ss_pred HHHHHHhHHHHhcCcEEEECCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHH-----HHCCCEEEEECCCHHHHHHH
Confidence 3345544432123446778888999999999999999998888878764433222 4555 44456542211111
Q ss_pred C-Cc----ccccCCCCCCCCCCEEEEecChHHHHHHHHHHHhCCCCceE-EEecCCCCCCCCCHHHHHHHhhcCCCccEE
Q 020101 166 G-EC----KIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQST-CVGIGGDPFNGTNFVDCVTKFIADPQTEGI 239 (331)
Q Consensus 166 ~-~~----~~~~~~~~~~~~G~valisQSG~~~~~~~~~~~~~g~g~s~-~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I 239 (331)
. .+ ...+.+.+ ..+-.++ .| |+++.++++.... .+.+ ++++|+-. .-.+++-++..+ .|++|+|
T Consensus 148 A~~la~e~g~~~v~pf-dd~~via--Gq-gTig~EI~eQ~~~---~~D~VvvpvGgGG-liaGia~~~K~~--~p~vkVI 217 (521)
T PRK12483 148 ALKLAEEEGLTFVPPF-DDPDVIA--GQ-GTVAMEILRQHPG---PLDAIFVPVGGGG-LIAGIAAYVKYV--RPEIKVI 217 (521)
T ss_pred HHHHHHhcCCeeeCCC-CChHHHH--HH-HHHHHHHHHHhCC---CCCEEEEecCccH-HHHHHHHHHHHh--CCCCEEE
Confidence 1 00 01111110 0111121 34 8888888766531 2443 55666531 012334444433 5899999
Q ss_pred EEEEccCCCcHHHHHHHHHHhCCCCCEEE
Q 020101 240 ILIGEIGGTAEEDAAALIKESGTEKPIVA 268 (331)
Q Consensus 240 ~ly~E~~g~~~~~~~~f~~a~r~~KPVvv 268 (331)
++--|.- ..+..+.+.+||+.+
T Consensus 218 GVep~~a-------~~~~~sl~~g~~~~~ 239 (521)
T PRK12483 218 GVEPDDS-------NCLQAALAAGERVVL 239 (521)
T ss_pred EEEeCCC-------chhhHHHhcCCcccC
Confidence 9987751 234445556777644
No 365
>PRK04148 hypothetical protein; Provisional
Probab=86.12 E-value=6.2 Score=33.43 Aligned_cols=84 Identities=21% Similarity=0.254 Sum_probs=52.2
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEE-eCCCCCCc-eecCcccc-cCH----HHhhhcCCCCEEEEecCh-hhH
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGG-VTPKKGGT-EHLGLPVF-NTV----AEAKAETKANASAIYVPP-PFA 112 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~-VnP~~~g~-~i~G~p~y-~sl----~dl~~~~~iDlaii~vp~-~~~ 112 (331)
+..+|++||+ | .|..+...|.+.|+++++. +||..... ...+..++ .++ -++-+ +.|++.-..|| +.+
T Consensus 16 ~~~kileIG~-G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~--~a~liysirpp~el~ 91 (134)
T PRK04148 16 KNKKIVELGI-G-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYK--NAKLIYSIRPPRDLQ 91 (134)
T ss_pred cCCEEEEEEe-c-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHh--cCCEEEEeCCCHHHH
Confidence 4567999999 7 8877888899999998843 55543100 01122222 111 12222 68988866655 566
Q ss_pred HHHHHHHHHcCCcEEE
Q 020101 113 AAAILEAMEAELDLVV 128 (331)
Q Consensus 113 ~~~v~~~~~~Gi~~iv 128 (331)
+.+++-+-+.|...++
T Consensus 92 ~~~~~la~~~~~~~~i 107 (134)
T PRK04148 92 PFILELAKKINVPLII 107 (134)
T ss_pred HHHHHHHHHcCCCEEE
Confidence 6677777778888744
No 366
>PRK08177 short chain dehydrogenase; Provisional
Probab=86.11 E-value=2.6 Score=37.56 Aligned_cols=78 Identities=12% Similarity=0.137 Sum_probs=46.3
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCC-EEEEecChhhHHHHHHHHHHc
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKAN-ASAIYVPPPFAAAAILEAMEA 122 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iD-laii~vp~~~~~~~v~~~~~~ 122 (331)
+|+|.|+++.+|+.+++.|.+.|++++ .++.+. +... .+.+... +. ...+..-.+...++++++.+.
T Consensus 3 ~vlItG~sg~iG~~la~~l~~~G~~V~-~~~r~~--~~~~------~~~~~~~---~~~~~~D~~d~~~~~~~~~~~~~~ 70 (225)
T PRK08177 3 TALIIGASRGLGLGLVDRLLERGWQVT-ATVRGP--QQDT------ALQALPG---VHIEKLDMNDPASLDQLLQRLQGQ 70 (225)
T ss_pred EEEEeCCCchHHHHHHHHHHhCCCEEE-EEeCCC--cchH------HHHhccc---cceEEcCCCCHHHHHHHHHHhhcC
Confidence 478899999999999999999999877 555433 1110 1111111 11 112334555666666666555
Q ss_pred CCcEEEEecCCC
Q 020101 123 ELDLVVCITEGI 134 (331)
Q Consensus 123 Gi~~ivi~t~G~ 134 (331)
++..++. ..|.
T Consensus 71 ~id~vi~-~ag~ 81 (225)
T PRK08177 71 RFDLLFV-NAGI 81 (225)
T ss_pred CCCEEEE-cCcc
Confidence 6777554 4443
No 367
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=85.98 E-value=4.1 Score=37.79 Aligned_cols=30 Identities=20% Similarity=0.375 Sum_probs=26.3
Q ss_pred EEEEcCCCCCCcHHHHHHHHcCCeEEEEeCC
Q 020101 45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTP 75 (331)
Q Consensus 45 VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP 75 (331)
|.|.|++|-.|+.+++.|.+.|++++ +++.
T Consensus 3 ILVtG~tGfiG~~l~~~L~~~g~~V~-~~~r 32 (314)
T COG0451 3 ILVTGGAGFIGSHLVERLLAAGHDVR-GLDR 32 (314)
T ss_pred EEEEcCcccHHHHHHHHHHhCCCeEE-EEeC
Confidence 78899999999999999999999988 5553
No 368
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=85.97 E-value=1.7 Score=44.31 Aligned_cols=67 Identities=16% Similarity=0.155 Sum_probs=47.0
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEE-EeCCCCCC-ceecCcccccCHHHhhhcCCCCEEEEecChhh
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGG-TEHLGLPVFNTVAEAKAETKANASAIYVPPPF 111 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~-~VnP~~~g-~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~ 111 (331)
...+|+|+|. |++|+.+++.++.+|.+++. -.+|...- ....|... .+++++.+ ..|+++.++....
T Consensus 253 aGKtVgVIG~-G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell~--~ADIVI~atGt~~ 321 (476)
T PTZ00075 253 AGKTVVVCGY-GDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVVE--TADIFVTATGNKD 321 (476)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHHh--cCCEEEECCCccc
Confidence 3456889999 99999999999999998652 24654410 01245543 36888877 7899999876433
No 369
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=85.84 E-value=2.7 Score=41.87 Aligned_cols=85 Identities=13% Similarity=0.076 Sum_probs=53.5
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce---ecCccccc-------CHHHhhhcCCCCEEEEecChhhH
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGLPVFN-------TVAEAKAETKANASAIYVPPPFA 112 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~---i~G~p~y~-------sl~dl~~~~~iDlaii~vp~~~~ 112 (331)
+|+|+|+ |++|+.+++.|.+.|++++ .++++... ++ ..|++++. .++++.- .+.|.++++++.+..
T Consensus 2 ~viIiG~-G~ig~~~a~~L~~~g~~v~-vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~-~~a~~vi~~~~~~~~ 78 (453)
T PRK09496 2 KIIIVGA-GQVGYTLAENLSGENNDVT-VIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGA-EDADLLIAVTDSDET 78 (453)
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCcEE-EEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCC-CcCCEEEEecCChHH
Confidence 6889999 9999999999999899877 66654310 11 13444332 2333311 268999999987665
Q ss_pred HHHH-HHHHHc-CCcEEEEec
Q 020101 113 AAAI-LEAMEA-ELDLVVCIT 131 (331)
Q Consensus 113 ~~~v-~~~~~~-Gi~~ivi~t 131 (331)
-..+ ..+.+. +...+++-+
T Consensus 79 n~~~~~~~r~~~~~~~ii~~~ 99 (453)
T PRK09496 79 NMVACQIAKSLFGAPTTIARV 99 (453)
T ss_pred HHHHHHHHHHhcCCCeEEEEE
Confidence 4433 444454 666656543
No 370
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=85.74 E-value=6.3 Score=37.13 Aligned_cols=93 Identities=15% Similarity=0.166 Sum_probs=61.4
Q ss_pred HHHHHHHcCCeEEE---E-eCCCCCCcee---------cCc---ccccCHHHhhhcCCCCEE-EEecChh---hHHHHHH
Q 020101 58 HTEQAIEYGTKMVG---G-VTPKKGGTEH---------LGL---PVFNTVAEAKAETKANAS-AIYVPPP---FAAAAIL 117 (331)
Q Consensus 58 ~~~~l~~~g~~iv~---~-VnP~~~g~~i---------~G~---p~y~sl~dl~~~~~iDla-ii~vp~~---~~~~~v~ 117 (331)
.++.+.+.|.+++- | =||-.+|..| .|. .++..++++.++.++-++ .-+-.+= -..+.++
T Consensus 34 ~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~ 113 (263)
T CHL00200 34 ALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIK 113 (263)
T ss_pred HHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHH
Confidence 35667777776553 2 5899888654 243 355556666543344433 3333432 3466899
Q ss_pred HHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcE
Q 020101 118 EAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR 153 (331)
Q Consensus 118 ~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~ 153 (331)
+|.+.|+.++++ +..+.++..++.+.+ +++|+.
T Consensus 114 ~~~~aGvdgvii--pDLP~ee~~~~~~~~-~~~gi~ 146 (263)
T CHL00200 114 KISQAGVKGLII--PDLPYEESDYLISVC-NLYNIE 146 (263)
T ss_pred HHHHcCCeEEEe--cCCCHHHHHHHHHHH-HHcCCC
Confidence 999999999887 777777777888887 788865
No 371
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=85.62 E-value=12 Score=33.08 Aligned_cols=60 Identities=8% Similarity=-0.003 Sum_probs=31.3
Q ss_pred CCEEEEecChH--H----HHHHHHHHHhCCCCc--eEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEE
Q 020101 181 GRIGIVSRSGT--L----TYEAVFQTTAVGLGQ--STCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILI 242 (331)
Q Consensus 181 G~valisQSG~--~----~~~~~~~~~~~g~g~--s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly 242 (331)
++|++++.+.. . ...+.+.+++.+..+ ...+...... +.....+-+++...|...+|+..
T Consensus 117 ~~i~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~i~~~ 184 (264)
T cd06267 117 RRIAFIGGPPDLSTARERLEGYREALEEAGIPLDEELIVEGDFSE--ESGYEAARELLASGERPTAIFAA 184 (264)
T ss_pred ceEEEecCCCccchHHHHHHHHHHHHHHcCCCCCcceEEecccch--hhHHHHHHHHHhcCCCCcEEEEc
Confidence 45666654432 1 122345555565433 2233322221 33455566788888888887765
No 372
>PLN02591 tryptophan synthase
Probab=85.60 E-value=21 Score=33.34 Aligned_cols=95 Identities=16% Similarity=0.170 Sum_probs=61.4
Q ss_pred HHHHHHHcCCeEEE---E-eCCCCCCcee---------cCc---ccccCHHHhhhcCCCCEE-EEecChh---hHHHHHH
Q 020101 58 HTEQAIEYGTKMVG---G-VTPKKGGTEH---------LGL---PVFNTVAEAKAETKANAS-AIYVPPP---FAAAAIL 117 (331)
Q Consensus 58 ~~~~l~~~g~~iv~---~-VnP~~~g~~i---------~G~---p~y~sl~dl~~~~~iDla-ii~vp~~---~~~~~v~ 117 (331)
+++.+.+.|.+++- | =||-.+|..| .|. .++..++++-++.++-++ .-+-++= -..+.++
T Consensus 21 ~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~ 100 (250)
T PLN02591 21 ALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMA 100 (250)
T ss_pred HHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHH
Confidence 45667777776543 2 5898887654 243 244455555433334433 3333432 3466899
Q ss_pred HHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEE
Q 020101 118 EAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155 (331)
Q Consensus 118 ~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~vi 155 (331)
+|.+.|+.++++ +..+.++..++.+.+ +++|+..|
T Consensus 101 ~~~~aGv~Gvii--pDLP~ee~~~~~~~~-~~~gl~~I 135 (250)
T PLN02591 101 TIKEAGVHGLVV--PDLPLEETEALRAEA-AKNGIELV 135 (250)
T ss_pred HHHHcCCCEEEe--CCCCHHHHHHHHHHH-HHcCCeEE
Confidence 999999999887 788878888888887 88887644
No 373
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=85.39 E-value=0.79 Score=45.98 Aligned_cols=72 Identities=11% Similarity=0.069 Sum_probs=47.2
Q ss_pred ccc-CCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce---ecC-cc--cccCHHHhhhcCCCCEEEEec
Q 020101 36 AVF-VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLG-LP--VFNTVAEAKAETKANASAIYV 107 (331)
Q Consensus 36 ~ll-~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~---i~G-~p--~y~sl~dl~~~~~iDlaii~v 107 (331)
.+| ..+..+|+|+|+ |.+|+.++++|.+.|..-+..+|.+... .. ..+ .. -|.++.+... +.|++|.+|
T Consensus 174 ~~~~~l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~--~aDiVI~aT 250 (414)
T PRK13940 174 RQLDNISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIK--KADIIIAAV 250 (414)
T ss_pred HHhcCccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhc--cCCEEEECc
Confidence 344 235677999999 9999999999999997645589987521 11 112 11 1233444444 689999888
Q ss_pred Chh
Q 020101 108 PPP 110 (331)
Q Consensus 108 p~~ 110 (331)
+..
T Consensus 251 ~a~ 253 (414)
T PRK13940 251 NVL 253 (414)
T ss_pred CCC
Confidence 753
No 374
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=85.38 E-value=2.9 Score=37.02 Aligned_cols=52 Identities=10% Similarity=0.206 Sum_probs=41.9
Q ss_pred HHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC-CCCCEEEEEe---CCCC
Q 020101 223 FVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG-TEKPIVAFIA---GLTA 275 (331)
Q Consensus 223 ~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r-~~KPVvv~k~---Grs~ 275 (331)
+.+.|+.+.+|+ .+.|++++.+.|-....+.+++.+++ ..||||++.. |...
T Consensus 18 l~~~l~~a~~~~-~~~vvl~InSpGG~v~~~~~i~~~l~~~~kPvia~v~~~~G~Aa 73 (187)
T cd07020 18 LERAIDQAEEGG-ADALIIELDTPGGLLDSTREIVQAILASPVPVVVYVYPSGARAA 73 (187)
T ss_pred HHHHHHHHHhCC-CCEEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCch
Confidence 566777787776 89999999987766788888888876 7899999886 6654
No 375
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=85.37 E-value=6 Score=37.37 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=28.9
Q ss_pred CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEE-eCC
Q 020101 40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGG-VTP 75 (331)
Q Consensus 40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~-VnP 75 (331)
++..+|+|.|++|-+|+.+++.|.+.|++++.. .++
T Consensus 3 ~~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~ 39 (325)
T PLN02989 3 DGGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDP 39 (325)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 345678899999999999999999999997632 354
No 376
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=85.33 E-value=6.2 Score=37.63 Aligned_cols=32 Identities=28% Similarity=0.471 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEE
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGG 72 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~ 72 (331)
+..+|.|.|++|-+|+.+.+.|.+.|++++..
T Consensus 5 ~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~ 36 (340)
T PLN02653 5 PRKVALITGITGQDGSYLTEFLLSKGYEVHGI 36 (340)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEE
Confidence 34578899999999999999999999997743
No 377
>PRK05993 short chain dehydrogenase; Provisional
Probab=85.19 E-value=3.5 Score=38.17 Aligned_cols=77 Identities=21% Similarity=0.280 Sum_probs=49.0
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEE-EEecChhhHHHHHHHHHH
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANAS-AIYVPPPFAAAAILEAME 121 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDla-ii~vp~~~~~~~v~~~~~ 121 (331)
..|+|.|+++.+|+.+++.+.+.|++++ .++.+. +. ++++.+. .++.. .+.+..+....+++++.+
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi-~~~r~~--~~---------~~~l~~~-~~~~~~~Dl~d~~~~~~~~~~~~~ 71 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVF-ATCRKE--ED---------VAALEAE-GLEAFQLDYAEPESIAALVAQVLE 71 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEECCH--HH---------HHHHHHC-CceEEEccCCCHHHHHHHHHHHHH
Confidence 4578899999999999999999999977 444432 11 2232221 23333 355667777777777755
Q ss_pred c---CCcEEEEecCC
Q 020101 122 A---ELDLVVCITEG 133 (331)
Q Consensus 122 ~---Gi~~ivi~t~G 133 (331)
. .+..++. ..|
T Consensus 72 ~~~g~id~li~-~Ag 85 (277)
T PRK05993 72 LSGGRLDALFN-NGA 85 (277)
T ss_pred HcCCCccEEEE-CCC
Confidence 3 4676554 444
No 378
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=85.15 E-value=8.2 Score=35.92 Aligned_cols=90 Identities=12% Similarity=0.064 Sum_probs=54.6
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCC-Cc--eecCcc--cccCHHHhhhc-CCCCEEEEecChhh-HH
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG-GT--EHLGLP--VFNTVAEAKAE-TKANASAIYVPPPF-AA 113 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~-g~--~i~G~p--~y~sl~dl~~~-~~iDlaii~vp~~~-~~ 113 (331)
...++.|+|+ |..++.+.+.....||+++ .+||+.. -. ...+.. .+...++.... ..-+.+++.|.... =.
T Consensus 99 p~~~L~IfGa-G~va~~la~la~~lGf~V~-v~D~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~vvi~th~h~~D~ 176 (246)
T TIGR02964 99 PAPHVVLFGA-GHVGRALVRALAPLPCRVT-WVDSREAEFPEDLPDGVATLVTDEPEAEVAEAPPGSYFLVLTHDHALDL 176 (246)
T ss_pred CCCEEEEECC-cHHHHHHHHHHhcCCCEEE-EEeCCcccccccCCCCceEEecCCHHHHHhcCCCCcEEEEEeCChHHHH
Confidence 3567889999 8889999999999999987 8888752 00 011111 11223333221 13467777776444 45
Q ss_pred HHHHHHH-HcCCcEEEEecC
Q 020101 114 AAILEAM-EAELDLVVCITE 132 (331)
Q Consensus 114 ~~v~~~~-~~Gi~~ivi~t~ 132 (331)
++++.++ +.....+=++-+
T Consensus 177 ~~L~~aL~~~~~~YIG~lGS 196 (246)
T TIGR02964 177 ELCHAALRRGDFAYFGLIGS 196 (246)
T ss_pred HHHHHHHhCCCCcEEEEeCC
Confidence 6677777 455666555443
No 379
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.03 E-value=3.3 Score=39.49 Aligned_cols=76 Identities=13% Similarity=0.159 Sum_probs=53.6
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHHH
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAM 120 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~ 120 (331)
+..+|+|||-|+-+|+-+..+|.+.|++++ ..+.+. +++++... +.|++|.+++.....+ .+.+
T Consensus 157 ~Gk~v~vIG~S~ivG~Pla~lL~~~gatVt-v~~s~t-----------~~l~~~~~--~ADIVI~avg~~~~v~--~~~i 220 (284)
T PRK14179 157 EGKHAVVIGRSNIVGKPMAQLLLDKNATVT-LTHSRT-----------RNLAEVAR--KADILVVAIGRGHFVT--KEFV 220 (284)
T ss_pred CCCEEEEECCCCcCcHHHHHHHHHCCCEEE-EECCCC-----------CCHHHHHh--hCCEEEEecCccccCC--HHHc
Confidence 557789999999999999999999999866 444332 15777766 7899999998766543 2334
Q ss_pred HcCCcEEEEecCCCC
Q 020101 121 EAELDLVVCITEGIP 135 (331)
Q Consensus 121 ~~Gi~~ivi~t~G~~ 135 (331)
+.| . +++--|++
T Consensus 221 k~G--a-vVIDvgin 232 (284)
T PRK14179 221 KEG--A-VVIDVGMN 232 (284)
T ss_pred cCC--c-EEEEecce
Confidence 544 2 33444553
No 380
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=84.98 E-value=9.1 Score=35.57 Aligned_cols=32 Identities=13% Similarity=0.065 Sum_probs=23.9
Q ss_pred EEEEcCCCCCCcHHHHHHHHcC----CeEEEEeCCCC
Q 020101 45 VICQGITGKNGTFHTEQAIEYG----TKMVGGVTPKK 77 (331)
Q Consensus 45 VaIvGasgk~G~~~~~~l~~~g----~~iv~~VnP~~ 77 (331)
|+|||++|.+|..++..+...+ .+++ .+|.+.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~-L~D~~~ 36 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELV-LYDIDE 36 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEE-EEeCCc
Confidence 4689998889998888877766 4555 666554
No 381
>PLN00203 glutamyl-tRNA reductase
Probab=84.95 E-value=0.69 Score=47.76 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=29.0
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 77 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~ 77 (331)
..+|+|||+ |.||+.+++.|...|.+-+..+|++.
T Consensus 266 ~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~ 300 (519)
T PLN00203 266 SARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSE 300 (519)
T ss_pred CCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence 567899999 99999999999988875344788875
No 382
>PRK05086 malate dehydrogenase; Provisional
Probab=84.91 E-value=5.6 Score=38.26 Aligned_cols=88 Identities=13% Similarity=0.070 Sum_probs=53.2
Q ss_pred eEEEEEcCCCCCCcHHHHHHHH-c--CCeEEEEe--CCCCCCce--ec--C--ccc----ccCHHHhhhcCCCCEEEEec
Q 020101 43 TRVICQGITGKNGTFHTEQAIE-Y--GTKMVGGV--TPKKGGTE--HL--G--LPV----FNTVAEAKAETKANASAIYV 107 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~-~--g~~iv~~V--nP~~~g~~--i~--G--~p~----y~sl~dl~~~~~iDlaii~v 107 (331)
+||+|+||+|+.|+.++..+.. . +.+++ .+ |+...|.. +. + ..+ -.++.+... +.|++|++.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~-L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~--~~DiVIita 77 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELS-LYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALE--GADVVLISA 77 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEE-EEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcC--CCCEEEEcC
Confidence 3689999999999998877644 3 34444 43 44332111 11 1 111 124333333 689999887
Q ss_pred Ch--h--------------hHHHHHHHHHHcCCcEEEEecCC
Q 020101 108 PP--P--------------FAAAAILEAMEAELDLVVCITEG 133 (331)
Q Consensus 108 p~--~--------------~~~~~v~~~~~~Gi~~ivi~t~G 133 (331)
-. . ...++++.+.+.+.+.+++..+.
T Consensus 78 G~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsN 119 (312)
T PRK05086 78 GVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITN 119 (312)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 43 1 45567777888898887776654
No 383
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.90 E-value=5.8 Score=38.43 Aligned_cols=26 Identities=23% Similarity=0.148 Sum_probs=20.6
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcC
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYG 66 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g 66 (331)
|+.||+|||++|+.|..++-.+...+
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~ 26 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGE 26 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcc
Confidence 35689999999999998877666544
No 384
>PRK09291 short chain dehydrogenase; Provisional
Probab=84.65 E-value=6.8 Score=35.32 Aligned_cols=29 Identities=14% Similarity=0.237 Sum_probs=25.6
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEE
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGG 72 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~ 72 (331)
+|+|.|++|.+|+.+++.|.+.|+++++.
T Consensus 4 ~vlVtGasg~iG~~ia~~l~~~G~~v~~~ 32 (257)
T PRK09291 4 TILITGAGSGFGREVALRLARKGHNVIAG 32 (257)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 57889999999999999999999998743
No 385
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=84.61 E-value=5.3 Score=38.27 Aligned_cols=84 Identities=15% Similarity=0.136 Sum_probs=51.5
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCC-eEEEEeCCCCC---Ccee-----------cC-cccccCHHHhhhcCCCCEEEEe
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKG---GTEH-----------LG-LPVFNTVAEAKAETKANASAIY 106 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~-~iv~~VnP~~~---g~~i-----------~G-~p~y~sl~dl~~~~~iDlaii~ 106 (331)
.+|+|||+ |.+|..++..+...|. +++ .+|.... |+.. .+ +....+++++ . +.|++|++
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~~Vv-lvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~~-~--~aDiVIit 76 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELADLV-LLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYADT-A--NSDIVVIT 76 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCCeEE-EEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHHh-C--CCCEEEEc
Confidence 47899999 9999998888877665 654 6665431 1100 01 1222456664 3 68999998
Q ss_pred cCh----------------hhHHHHHHHHHHcCCcEEEEec
Q 020101 107 VPP----------------PFAAAAILEAMEAELDLVVCIT 131 (331)
Q Consensus 107 vp~----------------~~~~~~v~~~~~~Gi~~ivi~t 131 (331)
.+. +.+.+++++..+.+-+.++++-
T Consensus 77 ag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~ 117 (305)
T TIGR01763 77 AGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVV 117 (305)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 873 2344566666666655544433
No 386
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=84.42 E-value=4 Score=39.15 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=25.9
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeC
Q 020101 43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVT 74 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~Vn 74 (331)
++|+|.|++|-.|+.+++.|.+. |++++ +++
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~-~~~ 33 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVY-GMD 33 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEE-EEe
Confidence 36889999999999999999875 68887 444
No 387
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=84.36 E-value=6.1 Score=39.33 Aligned_cols=86 Identities=17% Similarity=0.076 Sum_probs=51.2
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-c----eecCcccc-c---CHHHhhhc--CCCCEEEEecChh
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-T----EHLGLPVF-N---TVAEAKAE--TKANASAIYVPPP 110 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~----~i~G~p~y-~---sl~dl~~~--~~iDlaii~vp~~ 110 (331)
..+|+|+|+ |+.|+.+++.|.+.|++++ .|+..... + ...+.+++ - +.+.+.+. .+.|+++++++.+
T Consensus 231 ~~~iiIiG~-G~~g~~l~~~L~~~~~~v~-vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 231 VKRVMIVGG-GNIGYYLAKLLEKEGYSVK-LIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEE-EEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 466899999 9999999999999899876 66443210 0 11233332 1 22222111 3689998888764
Q ss_pred hH-HHHHHHHHHcCCcEEEE
Q 020101 111 FA-AAAILEAMEAELDLVVC 129 (331)
Q Consensus 111 ~~-~~~v~~~~~~Gi~~ivi 129 (331)
.. ......|.+.+++.++.
T Consensus 309 ~~n~~~~~~~~~~~~~~ii~ 328 (453)
T PRK09496 309 EANILSSLLAKRLGAKKVIA 328 (453)
T ss_pred HHHHHHHHHHHHhCCCeEEE
Confidence 33 22334455667776554
No 388
>PRK07411 hypothetical protein; Validated
Probab=84.27 E-value=4.5 Score=40.20 Aligned_cols=37 Identities=24% Similarity=0.214 Sum_probs=29.6
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCC
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG 78 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~ 78 (331)
+..+|+|||+ |-.|..++++|...|+.-+..||+...
T Consensus 37 ~~~~VlivG~-GGlG~~va~~La~~Gvg~l~lvD~D~v 73 (390)
T PRK07411 37 KAASVLCIGT-GGLGSPLLLYLAAAGIGRIGIVDFDVV 73 (390)
T ss_pred hcCcEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEe
Confidence 4567899999 889999999999999864447887654
No 389
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.10 E-value=4.6 Score=35.85 Aligned_cols=34 Identities=12% Similarity=0.070 Sum_probs=27.9
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCC
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTP 75 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP 75 (331)
..+|+|+|+||.+|+.+++.+.+.|++++..+..
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 3578899999999999999999999987633443
No 390
>PLN02550 threonine dehydratase
Probab=84.10 E-value=5.9 Score=41.66 Aligned_cols=209 Identities=18% Similarity=0.146 Sum_probs=108.5
Q ss_pred ccCHHHhhhcCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCC--cEEEccCCCCcccC
Q 020101 88 FNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSK--TRLVGPNCPGVIKP 165 (331)
Q Consensus 88 y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~g--i~viGPnc~Gi~~p 165 (331)
|..+..+..+..-.-+|.++...+++.+.-.|...|++..|++..+.++.-...+ +.+| +.+.|.+.-.-..-
T Consensus 145 ~n~I~~L~~e~~~~GVV~aSaGNhAqgvA~aA~~lGika~IvmP~~tp~~Kv~~~-----r~~GAeVvl~g~~~dea~~~ 219 (591)
T PLN02550 145 YNMMAKLPKEQLDKGVICSSAGNHAQGVALSAQRLGCDAVIAMPVTTPEIKWQSV-----ERLGATVVLVGDSYDEAQAY 219 (591)
T ss_pred HHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHH-----HHcCCEEEEeCCCHHHHHHH
Confidence 3345555332122235667788889999999999999998888777764433222 4455 45566442211110
Q ss_pred C-Cc----ccccCCCCCCCCCCEEEE-ecChHHHHHHHHHHHhCCCCce-EEEecCCCCCCCCCHHHHHHHhhcCCCccE
Q 020101 166 G-EC----KIGIMPGYIHKPGRIGIV-SRSGTLTYEAVFQTTAVGLGQS-TCVGIGGDPFNGTNFVDCVTKFIADPQTEG 238 (331)
Q Consensus 166 ~-~~----~~~~~~~~~~~~G~vali-sQSG~~~~~~~~~~~~~g~g~s-~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~ 238 (331)
. .+ ...|... + .+-.+| .| |+++.++++.... .+- -++.+|+-. .-.+++-++..+ .|++|+
T Consensus 220 A~~la~e~g~~fi~p--f--ddp~viaGq-gTig~EI~eQl~~---~~D~VvvpVGgGG-LiaGia~~lK~l--~p~vkV 288 (591)
T PLN02550 220 AKQRALEEGRTFIPP--F--DHPDVIAGQ-GTVGMEIVRQHQG---PLHAIFVPVGGGG-LIAGIAAYVKRV--RPEVKI 288 (591)
T ss_pred HHHHHHhcCCEEECC--C--CChHHHHHH-HHHHHHHHHHcCC---CCCEEEEEeChhH-HHHHHHHHHHHh--CCCCEE
Confidence 0 00 0112111 1 111222 34 7888888766532 244 366666642 012344445444 699999
Q ss_pred EEEEEccCCCcHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHH
Q 020101 239 IILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGA 318 (331)
Q Consensus 239 I~ly~E~~g~~~~~~~~f~~a~r~~KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~ 318 (331)
|++--|. +..+..+.+.+||+..=....-.. |..-. .. | +..++.+-+-.+-++.=+-+|..+
T Consensus 289 IGVEp~~-------a~~~~~s~~~G~~v~~~~~~tiAd-Giav~----~~----G-~~t~~i~~~~vD~vV~Vsd~eI~~ 351 (591)
T PLN02550 289 IGVEPSD-------ANAMALSLHHGERVMLDQVGGFAD-GVAVK----EV----G-EETFRLCRELVDGVVLVSRDAICA 351 (591)
T ss_pred EEEEECC-------ChHHHHHHhcCCccccCCCCCccc-eeecC----CC----C-HHHHHHHHhhCCEEEEECHHHHHH
Confidence 9998775 234555666778765422221111 21100 01 2 233443333344445556777788
Q ss_pred HHHHHHHhcCC
Q 020101 319 AMLEVFKQRGL 329 (331)
Q Consensus 319 ~~~a~~~~~~~ 329 (331)
+++.+++.-++
T Consensus 352 Ai~~l~e~~gi 362 (591)
T PLN02550 352 SIKDMFEEKRS 362 (591)
T ss_pred HHHHHHHHCCC
Confidence 87777765543
No 391
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=84.07 E-value=1.1 Score=44.89 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=29.3
Q ss_pred CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101 40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 77 (331)
Q Consensus 40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~ 77 (331)
.+..+|+|+|+ |.+|+.+++.+...|.+-+..+|++.
T Consensus 180 ~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~ 216 (423)
T PRK00045 180 LSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTL 216 (423)
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence 35578999999 99999999999988985333777764
No 392
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=83.95 E-value=2.2 Score=44.76 Aligned_cols=82 Identities=20% Similarity=0.285 Sum_probs=54.0
Q ss_pred CCCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHH
Q 020101 179 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIK 258 (331)
Q Consensus 179 ~~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~ 258 (331)
..+.|++|.-+|.+...- + ..-.+|. -++.+.|+.+.+||++|+|+|.+.+.|-.........+
T Consensus 306 ~~~~vavI~~~G~I~~~~-------~----~~~~~~~-----~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~ase~i~~ 369 (584)
T TIGR00705 306 VQDKIGIVHLEGPIADGR-------D----TEGNTGG-----DTVAALLRVARSDPDIKAVVLRINSPGGSVFASEIIRR 369 (584)
T ss_pred CCCeEEEEEEEEEEcCCC-------C----cccccCH-----HHHHHHHHHHhhCCCceEEEEEecCCCCCHHHHHHHHH
Confidence 467899999988874211 1 0001122 24678889999999999999999986543333333333
Q ss_pred Hh---C-CCCCEEEEEeCCCCC
Q 020101 259 ES---G-TEKPIVAFIAGLTAP 276 (331)
Q Consensus 259 a~---r-~~KPVvv~k~Grs~~ 276 (331)
++ | .+||||++..|....
T Consensus 370 ~i~~~~~~gKPVva~~~g~aaS 391 (584)
T TIGR00705 370 ELARAQARGKPVIVSMGAMAAS 391 (584)
T ss_pred HHHHHHhCCCcEEEEECCcccc
Confidence 33 3 569999998886554
No 393
>PRK12828 short chain dehydrogenase; Provisional
Probab=83.90 E-value=6.4 Score=34.78 Aligned_cols=82 Identities=20% Similarity=0.138 Sum_probs=48.1
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEE-EEecChhhHHHHHHHHH
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANAS-AIYVPPPFAAAAILEAM 120 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDla-ii~vp~~~~~~~v~~~~ 120 (331)
..+|+|.|++|.+|+.+++.+.+.|++++ .++.+.. +. -..+.++... ..+++ .+....+....+++++.
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~~v~-~~~r~~~-~~------~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~ 77 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGARVA-LIGRGAA-PL------SQTLPGVPAD-ALRIGGIDLVDPQAARRAVDEVN 77 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCCeEE-EEeCChH-hH------HHHHHHHhhc-CceEEEeecCCHHHHHHHHHHHH
Confidence 45688999999999999999999999976 5554331 10 0112222211 22222 23445566666666665
Q ss_pred Hc--CCcEEEEecCC
Q 020101 121 EA--ELDLVVCITEG 133 (331)
Q Consensus 121 ~~--Gi~~ivi~t~G 133 (331)
+. ++..++ ...|
T Consensus 78 ~~~~~~d~vi-~~ag 91 (239)
T PRK12828 78 RQFGRLDALV-NIAG 91 (239)
T ss_pred HHhCCcCEEE-ECCc
Confidence 53 577755 4444
No 394
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=83.90 E-value=6.5 Score=37.62 Aligned_cols=32 Identities=19% Similarity=0.157 Sum_probs=26.2
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVT 74 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn 74 (331)
.+|+|.|++|-+|+.+++.|.+.|++++..++
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~ 33 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVD 33 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEe
Confidence 36889999999999999999998887553444
No 395
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=83.73 E-value=4.7 Score=40.64 Aligned_cols=82 Identities=9% Similarity=0.109 Sum_probs=49.2
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEE-Ee--CCCCCCceecC------cccccCHHHhhhcCCCCEEEEecChhhH
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GV--TPKKGGTEHLG------LPVFNTVAEAKAETKANASAIYVPPPFA 112 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~-~V--nP~~~g~~i~G------~p~y~sl~dl~~~~~iDlaii~vp~~~~ 112 (331)
++||.|+|. |.-...+...+++.|+++++ +. ||.. ..+.. ..-++.+.++.+++++|++|...-...+
T Consensus 2 ~~kVLvlG~-G~re~al~~~l~~~g~~v~~~~~~~Npg~--~~~a~~~~~~~~~d~e~l~~~~~~~~id~Vi~~~d~~l~ 78 (435)
T PRK06395 2 TMKVMLVGS-GGREDAIARAIKRSGAILFSVIGHENPSI--KKLSKKYLFYDEKDYDLIEDFALKNNVDIVFVGPDPVLA 78 (435)
T ss_pred ceEEEEECC-cHHHHHHHHHHHhCCCeEEEEECCCChhh--hhcccceeecCCCCHHHHHHHHHHhCCCEEEECCChHHH
Confidence 468999998 54445666778888887554 34 4442 11111 1112233344445679999877544456
Q ss_pred HHHHHHHHHcCCcE
Q 020101 113 AAAILEAMEAELDL 126 (331)
Q Consensus 113 ~~~v~~~~~~Gi~~ 126 (331)
...++++.+.|++.
T Consensus 79 ~~~~~~l~~~Gi~v 92 (435)
T PRK06395 79 TPLVNNLLKRGIKV 92 (435)
T ss_pred HHHHHHHHHCCCcE
Confidence 66677777888775
No 396
>PRK07340 ornithine cyclodeaminase; Validated
Probab=83.70 E-value=0.62 Score=44.65 Aligned_cols=86 Identities=13% Similarity=-0.006 Sum_probs=57.2
Q ss_pred CCCCeEEEEEcCCCCCCcHHHHHHHH-cCCeEEEEeCCCCCCce-----e--cCccc-ccCHHHhhhcCCCCEEEEecCh
Q 020101 39 VDKNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGGTE-----H--LGLPV-FNTVAEAKAETKANASAIYVPP 109 (331)
Q Consensus 39 ~~k~~~VaIvGasgk~G~~~~~~l~~-~g~~iv~~VnP~~~g~~-----i--~G~p~-y~sl~dl~~~~~iDlaii~vp~ 109 (331)
.++..+++|+|+ |.+++.+++.+.. .+.+-+...|+.....+ . .+.++ +.+++++.. +.|+++.+||.
T Consensus 122 ~~~~~~v~IiGa-G~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~--~aDiVitaT~s 198 (304)
T PRK07340 122 PAPPGDLLLIGT-GVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPE--AVDLVVTATTS 198 (304)
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhh--cCCEEEEccCC
Confidence 346678999999 9999999998865 57665557777642111 1 12232 467887776 79999999987
Q ss_pred hhHHHHHHHHHHcCCcEEEE
Q 020101 110 PFAAAAILEAMEAELDLVVC 129 (331)
Q Consensus 110 ~~~~~~v~~~~~~Gi~~ivi 129 (331)
.. .+++..++.|.+..-+
T Consensus 199 ~~--Pl~~~~~~~g~hi~~i 216 (304)
T PRK07340 199 RT--PVYPEAARAGRLVVAV 216 (304)
T ss_pred CC--ceeCccCCCCCEEEec
Confidence 65 4444445666655333
No 397
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=83.64 E-value=4.1 Score=34.41 Aligned_cols=82 Identities=13% Similarity=0.163 Sum_probs=46.4
Q ss_pred EEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecC---cccccCHHHhhh--cCCCCEEEEec-ChhhHHHHHHH
Q 020101 45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLG---LPVFNTVAEAKA--ETKANASAIYV-PPPFAAAAILE 118 (331)
Q Consensus 45 VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G---~p~y~sl~dl~~--~~~iDlaii~v-p~~~~~~~v~~ 118 (331)
++|+|+ |..++.+++.....||+++ .+||+. +.... +.+.+ .+++.+ +.+.+.+|+.+ ..+.=.++++.
T Consensus 1 L~I~Ga-G~va~al~~la~~lg~~v~-v~d~r~--e~~~~~~~~~~~~-~~~~~~~~~~~~~t~Vv~th~h~~D~~~L~~ 75 (136)
T PF13478_consen 1 LVIFGA-GHVARALARLAALLGFRVT-VVDPRP--ERFPEADEVICIP-PDDILEDLEIDPNTAVVMTHDHELDAEALEA 75 (136)
T ss_dssp EEEES--STCHHHHHHHHHHCTEEEE-EEES-C--CC-TTSSEEECSH-HHHHHHHC-S-TT-EEE--S-CCCHHHHHHH
T ss_pred CEEEeC-cHHHHHHHHHHHhCCCEEE-EEcCCc--cccCCCCccEecC-hHHHHhccCCCCCeEEEEcCCchhHHHHHHH
Confidence 367999 9999999999999999988 899886 32211 22222 222211 11233333444 44566678888
Q ss_pred HHHcCCcEEEEec
Q 020101 119 AMEAELDLVVCIT 131 (331)
Q Consensus 119 ~~~~Gi~~ivi~t 131 (331)
+++.+.+.+-++.
T Consensus 76 ~l~~~~~YiG~lG 88 (136)
T PF13478_consen 76 ALASPARYIGLLG 88 (136)
T ss_dssp HTTSS-SEEEESS
T ss_pred HHcCCCCEEEeec
Confidence 8888877766544
No 398
>PRK06182 short chain dehydrogenase; Validated
Probab=83.51 E-value=6.9 Score=35.91 Aligned_cols=79 Identities=13% Similarity=0.171 Sum_probs=50.8
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCE-EEEecChhhHHHHHHHHH
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANA-SAIYVPPPFAAAAILEAM 120 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDl-aii~vp~~~~~~~v~~~~ 120 (331)
...++|.|+++.+|+.+.+.+.+.|++++ .++.+. +. ++++... +++. ..+.+.++.....++++.
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~-~~~r~~--~~---------l~~~~~~-~~~~~~~Dv~~~~~~~~~~~~~~ 69 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVY-GAARRV--DK---------MEDLASL-GVHPLSLDVTDEASIKAAVDTII 69 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEE-EEeCCH--HH---------HHHHHhC-CCeEEEeeCCCHHHHHHHHHHHH
Confidence 34678899999999999999999999977 444332 11 2222221 2333 335667777777777766
Q ss_pred Hc--CCcEEEEecCCC
Q 020101 121 EA--ELDLVVCITEGI 134 (331)
Q Consensus 121 ~~--Gi~~ivi~t~G~ 134 (331)
+. ++..+++ ..|+
T Consensus 70 ~~~~~id~li~-~ag~ 84 (273)
T PRK06182 70 AEEGRIDVLVN-NAGY 84 (273)
T ss_pred HhcCCCCEEEE-CCCc
Confidence 54 5777554 5554
No 399
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=83.43 E-value=4.2 Score=39.41 Aligned_cols=90 Identities=12% Similarity=0.203 Sum_probs=61.5
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce-----------ecCcc-----------------------
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-----------HLGLP----------------------- 86 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~-----------i~G~p----------------------- 86 (331)
++.-|+|||| |..|+.+.+.|.+.|.+-+-.||+....-. .-|.|
T Consensus 73 ~~syVVVVG~-GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw~eIdar~~ 151 (430)
T KOG2018|consen 73 TNSYVVVVGA-GGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPWCEIDARNM 151 (430)
T ss_pred cCcEEEEEec-CchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCccceecHHHh
Confidence 3456889999 899999999999988764447787653210 01222
Q ss_pred ccc--CHHHhhhcCCCCEEEEecCh-hhHHHHHHHHHHcCCcEEEEecCCC
Q 020101 87 VFN--TVAEAKAETKANASAIYVPP-PFAAAAILEAMEAELDLVVCITEGI 134 (331)
Q Consensus 87 ~y~--sl~dl~~~~~iDlaii~vp~-~~~~~~v~~~~~~Gi~~ivi~t~G~ 134 (331)
.|+ +=+|+.. -+||.+++|.-. +.-.+.++.|..+|++.+ -+.|.
T Consensus 152 l~~~~s~edll~-gnPdFvvDciDNidtKVdLL~y~~~~~l~Vi--ss~Ga 199 (430)
T KOG2018|consen 152 LWTSSSEEDLLS-GNPDFVVDCIDNIDTKVDLLEYCYNHGLKVI--SSTGA 199 (430)
T ss_pred hcCCCchhhhhc-CCCCeEeEhhhhhhhhhHHHHHHHHcCCceE--eccCc
Confidence 121 2333332 269999999965 667899999999999973 45553
No 400
>PRK10433 putative RNA methyltransferase; Provisional
Probab=83.43 E-value=19 Score=33.16 Aligned_cols=64 Identities=16% Similarity=0.070 Sum_probs=40.7
Q ss_pred CeEEEEEcCC--CCCCcHHHHHHHHcCCeEEEEeCCCCCCc-e-----------ecCcccccCHHHhhhcCCCCEEEEec
Q 020101 42 NTRVICQGIT--GKNGTFHTEQAIEYGTKMVGGVTPKKGGT-E-----------HLGLPVFNTVAEAKAETKANASAIYV 107 (331)
Q Consensus 42 ~~~VaIvGas--gk~G~~~~~~l~~~g~~iv~~VnP~~~g~-~-----------i~G~p~y~sl~dl~~~~~iDlaii~v 107 (331)
.++|+++... +|+| .++|.+.++|+.-+..|||+.... + +...++|+++++... +.+.++-++
T Consensus 2 ~i~vVLv~p~~p~NiG-aiaRam~nfG~~~L~lV~p~~~~~~~a~~~A~gA~d~L~~a~v~~tL~eAl~--d~~~vigtt 78 (228)
T PRK10433 2 RLTIILVAPARAENVG-AAARAMKTMGFSELRIVDSQAHLEPAARWVAHGSGDILDNAKVFDTLAEALH--DVDFTVATT 78 (228)
T ss_pred ceEEEEEcCCCCccHH-HHHHHHHHCCCCEEEEeCCCCCCcHHHHHHhccHHHHhcCceEECCHHHHHH--hCCeEEEEc
Confidence 3678888863 3444 467899999997444899984211 1 234567777777776 566555444
Q ss_pred C
Q 020101 108 P 108 (331)
Q Consensus 108 p 108 (331)
.
T Consensus 79 a 79 (228)
T PRK10433 79 A 79 (228)
T ss_pred c
Confidence 3
No 401
>PRK09186 flagellin modification protein A; Provisional
Probab=83.42 E-value=3.7 Score=37.08 Aligned_cols=85 Identities=12% Similarity=0.119 Sum_probs=48.7
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCE-EEEecChhhHHHHHHHHH
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANA-SAIYVPPPFAAAAILEAM 120 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDl-aii~vp~~~~~~~v~~~~ 120 (331)
..+|+|.|+++.+|+.+++.|.+.|++++ .++.+. +... ....++........++. ..+.+.++...++++++.
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~~v~-~~~r~~--~~~~--~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 78 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGGIVI-AADIDK--EALN--ELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSA 78 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEE-EEecCh--HHHH--HHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHH
Confidence 45688999999999999999999999977 454432 1110 01111111111112333 335566677777777665
Q ss_pred Hc--CCcEEEEec
Q 020101 121 EA--ELDLVVCIT 131 (331)
Q Consensus 121 ~~--Gi~~ivi~t 131 (331)
+. ++..++..+
T Consensus 79 ~~~~~id~vi~~A 91 (256)
T PRK09186 79 EKYGKIDGAVNCA 91 (256)
T ss_pred HHcCCccEEEECC
Confidence 42 366655433
No 402
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=83.40 E-value=4.2 Score=39.21 Aligned_cols=87 Identities=15% Similarity=0.245 Sum_probs=60.0
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc--eecC--ccccc-------CHHHhhhcCCCCEEEEecChhh-
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLG--LPVFN-------TVAEAKAETKANASAIYVPPPF- 111 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~--~i~G--~p~y~-------sl~dl~~~~~iDlaii~vp~~~- 111 (331)
+|.|.|..|=+|+-....|++.|++++ .+|--..|. .+.- .+.|. -++++.++++||.+|=|..-..
T Consensus 2 ~iLVtGGAGYIGSHtv~~Ll~~G~~vv-V~DNL~~g~~~~v~~~~~~f~~gDi~D~~~L~~vf~~~~idaViHFAa~~~V 80 (329)
T COG1087 2 KVLVTGGAGYIGSHTVRQLLKTGHEVV-VLDNLSNGHKIALLKLQFKFYEGDLLDRALLTAVFEENKIDAVVHFAASISV 80 (329)
T ss_pred eEEEecCcchhHHHHHHHHHHCCCeEE-EEecCCCCCHHHhhhccCceEEeccccHHHHHHHHHhcCCCEEEECcccccc
Confidence 578898878899888899999999977 544322221 1222 23332 3777888889999997643332
Q ss_pred -----------------HHHHHHHHHHcCCcEEEEecC
Q 020101 112 -----------------AAAAILEAMEAELDLVVCITE 132 (331)
Q Consensus 112 -----------------~~~~v~~~~~~Gi~~ivi~t~ 132 (331)
....++.|.+.||+.+| |++
T Consensus 81 gESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~v-FSS 117 (329)
T COG1087 81 GESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFI-FSS 117 (329)
T ss_pred chhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEE-Eec
Confidence 34467889999999955 775
No 403
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=83.35 E-value=1.6 Score=45.92 Aligned_cols=177 Identities=12% Similarity=-0.036 Sum_probs=102.0
Q ss_pred ecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhHHH-HHHHHHhccCCc-EEEccCC
Q 020101 82 HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMV-RVKAALNNQSKT-RLVGPNC 159 (331)
Q Consensus 82 i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~-~l~~~a~~~~gi-~viGPnc 159 (331)
..|-+.+...+.+.+ .-+-+..+++.....-.-..+....++.-+-+++++..+.-+ .+...+ +..++ .++.=.|
T Consensus 307 n~Gg~gvla~D~l~~--~g~~l~~~~~~~~~~l~~~Lp~~~~~~NPvD~~~~a~~e~y~~~~~~~~-~~~~~~~llvi~~ 383 (598)
T COG1042 307 NGGGPGVLAADALEE--RGLKLAELSEETIEKLRSRLPPHASVKNPVDLTGDADAERYKKTLEILL-RDENVDALLVIVL 383 (598)
T ss_pred cCCCccccchhHHHH--cCCCcCCCCHHHHHHHHhhcCccccccCCeeeecCCcHHHHHHHHHHHH-hccCCceEEEEec
Confidence 456777777777765 223332232222222222223345677767777887765433 222222 33332 2222222
Q ss_pred CCcccCC----CcccccCCCCCCCCCCEEEEecChHHHHHH-HHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCC
Q 020101 160 PGVIKPG----ECKIGIMPGYIHKPGRIGIVSRSGTLTYEA-VFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADP 234 (331)
Q Consensus 160 ~Gi~~p~----~~~~~~~~~~~~~~G~valisQSG~~~~~~-~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp 234 (331)
.+..... ...+.+ .....|+..+++|.|+..... .....++|++++.....++.+ ...+.++..|+..+.
T Consensus 384 ~~~~~~~~~~a~~~~~~---~~~~~~k~~v~~~~gg~~~~~~~~~l~~~gip~~~~pe~a~~a--~~~l~~~~~~~~~~~ 458 (598)
T COG1042 384 PPASADPEETAEAIIRA---TAKKRGKPVVVSSMGGESSEKARRLLEEAGIPTYPTPERAVKA--LSALARYRRWLKKLR 458 (598)
T ss_pred CCCCCCchhhhHHHHHh---hhhhCCCceEEEecCCcchHHHHHHhhhcCCCCccCchHHHHH--HHHHHHHHHHHHhhc
Confidence 2211111 111111 335778999999999943333 356778999999999999998 788999999999999
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCC--CCCCcccc
Q 020101 235 QTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRR--MGHAGAIV 288 (331)
Q Consensus 235 ~T~~I~ly~E~~g~~~~~~~~f~~a~r~~KPVvv~k~Grs~~~g~~--~sHtga~a 288 (331)
.| .|.|+. ++..+.+.++++. ..+ .+|+...+
T Consensus 459 ~~----~~~~~~-----------------~~~~~~~~e~~~~-l~~~gi~~~~~~~ 492 (598)
T COG1042 459 ET----PVFEGG-----------------GGTTLDEPEAKEL-LEAYGIPVPATIA 492 (598)
T ss_pred cC----cccccC-----------------CccccCchhhhhH-HHHhcCccccccc
Confidence 98 236651 5666777666665 222 56766644
No 404
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=83.34 E-value=3.4 Score=40.44 Aligned_cols=32 Identities=16% Similarity=0.035 Sum_probs=25.5
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCC
Q 020101 43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTP 75 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP 75 (331)
+||+|-|. |++|+.++|.+.+. ++++++.-||
T Consensus 3 ~kv~INGf-GRIGR~v~R~~~~~~~~~ivaiNd~ 35 (342)
T PTZ00353 3 ITVGINGF-GPVGKAVLFASLTDPLVTVVAVNDA 35 (342)
T ss_pred eEEEEECC-ChHHHHHHHHHHhcCCcEEEEecCC
Confidence 68999999 99999999986654 6888854444
No 405
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=83.21 E-value=3.2 Score=38.79 Aligned_cols=194 Identities=15% Similarity=0.162 Sum_probs=104.6
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC----------ceecCcc-cccCHHHhhhcCCCCEEEEecChhh
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG----------TEHLGLP-VFNTVAEAKAETKANASAIYVPPPF 111 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g----------~~i~G~p-~y~sl~dl~~~~~iDlaii~vp~~~ 111 (331)
++|.|+|. ..-|+.+++.|.+.|+ ++..|--.+.+ ....|-- -...+.++..++++|++|++|.|-+
T Consensus 1 m~ILvlgG-TtE~r~la~~L~~~g~-v~~sv~t~~g~~~~~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA 78 (249)
T PF02571_consen 1 MKILVLGG-TTEGRKLAERLAEAGY-VIVSVATSYGGELLKPELPGLEVRVGRLGDEEGLAEFLRENGIDAVIDATHPFA 78 (249)
T ss_pred CEEEEEec-hHHHHHHHHHHHhcCC-EEEEEEhhhhHhhhccccCCceEEECCCCCHHHHHHHHHhCCCcEEEECCCchH
Confidence 36788887 4578889999999887 44333222211 1222322 3345777777779999999998843
Q ss_pred ---HHHHHHHHHHcCCcEEEEecCCCCh---------hHHHHHHHHHhccC-C-c-EEEccCCCCcccC-C--Cccc--c
Q 020101 112 ---AAAAILEAMEAELDLVVCITEGIPQ---------HDMVRVKAALNNQS-K-T-RLVGPNCPGVIKP-G--ECKI--G 171 (331)
Q Consensus 112 ---~~~~v~~~~~~Gi~~ivi~t~G~~e---------~~~~~l~~~a~~~~-g-i-~viGPnc~Gi~~p-~--~~~~--~ 171 (331)
...+.+.|.+.||+.+=.--+.... ++.+++.+.+.+.. + + --+|-+.+--+.+ . +.++ =
T Consensus 79 ~~is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l~~~~~~~iflttGsk~L~~f~~~~~~~~r~~~R 158 (249)
T PF02571_consen 79 AEISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEEAAELLKELGGGRIFLTTGSKNLPPFVPAPLPGERLFAR 158 (249)
T ss_pred HHHHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHHHHHHHhhcCCCCEEEeCchhhHHHHhhcccCCCEEEEE
Confidence 5667788889999885433232211 12344444442222 2 2 2446665554422 1 1111 1
Q ss_pred cCCCCCCCCCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHH
Q 020101 172 IMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEE 251 (331)
Q Consensus 172 ~~~~~~~~~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~ 251 (331)
..|. +-. +.|+....++..-+- .+.. +=..|..+-+..++ +-=|+++. .
T Consensus 159 vLp~----~~~-------------------~~g~~~~~iia~~GP----fs~e-~n~al~~~~~i~~l-VtK~SG~~--g 207 (249)
T PF02571_consen 159 VLPT----PES-------------------ALGFPPKNIIAMQGP----FSKE-LNRALFRQYGIDVL-VTKESGGS--G 207 (249)
T ss_pred ECCC----ccc-------------------cCCCChhhEEEEeCC----CCHH-HHHHHHHHcCCCEE-EEcCCCch--h
Confidence 1121 111 346666666655543 1222 22334444555554 34566543 2
Q ss_pred HHHHHHHHhC-CCCCEEEEE
Q 020101 252 DAAALIKESG-TEKPIVAFI 270 (331)
Q Consensus 252 ~~~~f~~a~r-~~KPVvv~k 270 (331)
...| ++|++ .+.|||++|
T Consensus 208 ~~eK-i~AA~~lgi~vivI~ 226 (249)
T PF02571_consen 208 FDEK-IEAARELGIPVIVIK 226 (249)
T ss_pred hHHH-HHHHHHcCCeEEEEe
Confidence 3334 45555 999999998
No 406
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=83.17 E-value=2.9 Score=36.22 Aligned_cols=53 Identities=21% Similarity=0.154 Sum_probs=43.5
Q ss_pred HHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC-CCCCEEEEEeCCCC
Q 020101 223 FVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG-TEKPIVAFIAGLTA 275 (331)
Q Consensus 223 ~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r-~~KPVvv~k~Grs~ 275 (331)
+.+-|.++..++.++.|.+|+.+.|-....+.....+++ .++||+++..|...
T Consensus 17 ~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~~i~~~i~~~~~~v~~~~~g~aa 70 (162)
T cd07013 17 FAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFIKADVVTIIDGLAA 70 (162)
T ss_pred HHHHHHHHhcCCCCCCEEEEEECCCCcHHHHHHHHHHHHhcCCCceEEEEeehh
Confidence 456677888999999999999998777888888888887 67899988777654
No 407
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=83.15 E-value=8.6 Score=37.28 Aligned_cols=26 Identities=23% Similarity=0.148 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcC
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYG 66 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g 66 (331)
+..||+||||+|+.|+..+-.+...+
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~ 27 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGE 27 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCC
Confidence 46889999999999998887766554
No 408
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=83.10 E-value=2.9 Score=36.84 Aligned_cols=36 Identities=22% Similarity=0.180 Sum_probs=29.3
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 77 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~ 77 (331)
+..+++|+|++|.+|+...+.+.+.|.+++ .++++.
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~-l~~R~~ 62 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVV-LVGRDL 62 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEcCCH
Confidence 456789999999999999999988888766 666653
No 409
>PRK08264 short chain dehydrogenase; Validated
Probab=83.08 E-value=7.1 Score=34.80 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCC-eEEEEeCC
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTP 75 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~-~iv~~VnP 75 (331)
+..+|+|.|+||.+|+.+++.|.+.|. +++ .+..
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~-~~~r 39 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVY-AAAR 39 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCcccEE-EEec
Confidence 345688999999999999999999998 665 5443
No 410
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.07 E-value=3.4 Score=41.72 Aligned_cols=78 Identities=17% Similarity=0.225 Sum_probs=49.3
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc------e--ecCcccccC---HHHhhhcCCCCEEEEecCh-h
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT------E--HLGLPVFNT---VAEAKAETKANASAIYVPP-P 110 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~------~--i~G~p~y~s---l~dl~~~~~iDlaii~vp~-~ 110 (331)
.+|.|+|. |+.|..+++.|.+.|+++. +.|.+.... . -.|+.++.. .+.+ . ++|++|+. |. .
T Consensus 15 ~~i~v~G~-G~sG~a~a~~L~~~G~~V~-~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~-~--~~dlVV~S-pgi~ 88 (458)
T PRK01710 15 KKVAVVGI-GVSNIPLIKFLVKLGAKVT-AFDKKSEEELGEVSNELKELGVKLVLGENYLDKL-D--GFDVIFKT-PSMR 88 (458)
T ss_pred CeEEEEcc-cHHHHHHHHHHHHCCCEEE-EECCCCCccchHHHHHHHhCCCEEEeCCCChHHh-c--cCCEEEEC-CCCC
Confidence 46888999 9999999999999999876 666432101 0 136555421 2333 3 58987765 42 2
Q ss_pred hHHHHHHHHHHcCCcE
Q 020101 111 FAAAAILEAMEAELDL 126 (331)
Q Consensus 111 ~~~~~v~~~~~~Gi~~ 126 (331)
..-+.+.+|.+.|++.
T Consensus 89 ~~~p~~~~a~~~~i~i 104 (458)
T PRK01710 89 IDSPELVKAKEEGAYI 104 (458)
T ss_pred CCchHHHHHHHcCCcE
Confidence 2335667777777664
No 411
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=82.78 E-value=11 Score=38.88 Aligned_cols=159 Identities=16% Similarity=0.179 Sum_probs=85.2
Q ss_pred ccCHHHhhhcCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcE--EEccCCCCcccC
Q 020101 88 FNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR--LVGPNCPGVIKP 165 (331)
Q Consensus 88 y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~--viGPnc~Gi~~p 165 (331)
|..+..+..+....-+|-++.....+.+.-.|...|++.++++..+.++.-.. .. +.+|.. +.|.+.-.-..-
T Consensus 53 ~n~i~~l~~~~~~~gVV~aSaGNha~~vA~aa~~~Gi~~~IvmP~~tp~~Kv~----~~-r~~GA~Vvl~g~~~d~a~~~ 127 (499)
T TIGR01124 53 YNKMAQLSPEQKARGVIAASAGNHAQGVAFSAARLGLKALIVMPETTPDIKVD----AV-RGFGGEVVLHGANFDDAKAK 127 (499)
T ss_pred HHHHHHhhHHhcCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHH----HH-HhCCCEEEEeCcCHHHHHHH
Confidence 44455553332345677788889999999999999999988777666543222 22 456644 445332111110
Q ss_pred C-Cc----ccccCCCCCCCCCCEEEEecChHHHHHHHHHHHhCCCCceE-EEecCCCCCCCCCHHHHHHHhhcCCCccEE
Q 020101 166 G-EC----KIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQST-CVGIGGDPFNGTNFVDCVTKFIADPQTEGI 239 (331)
Q Consensus 166 ~-~~----~~~~~~~~~~~~G~valisQSG~~~~~~~~~~~~~g~g~s~-~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I 239 (331)
. .+ ...+.+ +-.+...+.--|+++.++++... ..+.+ ++++|+-. .-.+++-++..+ .|++|+|
T Consensus 128 a~~la~~~g~~~i~----p~~~~~~i~G~gtig~EI~~q~~---~~~D~vvvpvGgGG-liaGia~~lk~~--~p~~kVI 197 (499)
T TIGR01124 128 AIELSQEKGLTFIH----PFDDPLVIAGQGTLALEILRQVA---NPLDAVFVPVGGGG-LAAGVAALIKQL--MPEIKVI 197 (499)
T ss_pred HHHHHHhcCCEeeC----CCCChHHHHhhHHHHHHHHHhCC---CCCCEEEEccCccH-HHHHHHHHHHHh--CCCCEEE
Confidence 0 00 011111 11122222223888888876543 23454 55555531 012334444433 6889999
Q ss_pred EEEEccCCCcHHHHHHHHHHhCCCCCEEE
Q 020101 240 ILIGEIGGTAEEDAAALIKESGTEKPIVA 268 (331)
Q Consensus 240 ~ly~E~~g~~~~~~~~f~~a~r~~KPVvv 268 (331)
++--|. ...+..+.+.++|+-.
T Consensus 198 gVep~~-------~~~~~~s~~~g~~~~~ 219 (499)
T TIGR01124 198 GVEPTD-------SDCMKQALDAGEPVDL 219 (499)
T ss_pred EEEECC-------ChHHHHHHhcCCceeC
Confidence 988775 1234455556777653
No 412
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=82.76 E-value=4.3 Score=35.90 Aligned_cols=51 Identities=12% Similarity=0.193 Sum_probs=41.2
Q ss_pred HHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC-CCCCEEEEEeCCCC
Q 020101 224 VDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG-TEKPIVAFIAGLTA 275 (331)
Q Consensus 224 ~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r-~~KPVvv~k~Grs~ 275 (331)
.+.|+...+++ .+.|++++.+.|-......+..+.++ ..|||+++..|...
T Consensus 19 ~~~l~~a~~~~-~~~ivl~inspGG~v~~~~~I~~~l~~~~~pvva~V~g~Aa 70 (178)
T cd07021 19 ERALKEAKEEG-ADAVVLDIDTPGGRVDSALEIVDLILNSPIPTIAYVNDRAA 70 (178)
T ss_pred HHHHHHHHhCC-CCeEEEEEECcCCCHHHHHHHHHHHHhCCCCEEEEECCchH
Confidence 34455556676 89999999998877888999988887 77999999988755
No 413
>PRK10949 protease 4; Provisional
Probab=82.65 E-value=2.8 Score=44.26 Aligned_cols=112 Identities=21% Similarity=0.307 Sum_probs=69.4
Q ss_pred CCCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHH
Q 020101 179 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIK 258 (331)
Q Consensus 179 ~~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~ 258 (331)
..+.||+|.-+|.+...- ...| .+| .-++.+.|+...+||++|+|+|.+.+.|-.........+
T Consensus 324 ~~~~Iavi~~~G~I~~g~------~~~g-----~~~-----~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~i~~ 387 (618)
T PRK10949 324 TGGSIAVIFANGAIMDGE------ETPG-----NVG-----GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRA 387 (618)
T ss_pred CCCeEEEEEEEEEEcCCC------CcCC-----CcC-----HHHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHHHHH
Confidence 356799999999884310 0001 112 224678899999999999999999987654444444444
Q ss_pred Hh---C-CCCCEEEEEeCCCCCCCC-------C-----CCCCcccccCCCCCHHHHHHHHHHcCCe
Q 020101 259 ES---G-TEKPIVAFIAGLTAPPGR-------R-----MGHAGAIVSGGKGTAQDKIKTLREAGVT 308 (331)
Q Consensus 259 a~---r-~~KPVvv~k~Grs~~~g~-------~-----~sHtga~a~~~~g~~~~~~a~~~~aGv~ 308 (331)
++ | .+||||+.-.+-...+|. + .+=|||+.- -+....+..++++.||-
T Consensus 388 ~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV--~~~~~~~~~ll~klGV~ 451 (618)
T PRK10949 388 ELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGI--FGVINTVENSLDSIGVH 451 (618)
T ss_pred HHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcE--EEEccCHHHHHHhcCCc
Confidence 44 3 679999987665443211 1 122555430 01233467789999975
No 414
>PRK09224 threonine dehydratase; Reviewed
Probab=82.59 E-value=9.2 Score=39.38 Aligned_cols=159 Identities=16% Similarity=0.152 Sum_probs=84.1
Q ss_pred ccCHHHhhhcCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcE--EEccCCCCcccC
Q 020101 88 FNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR--LVGPNCPGVIKP 165 (331)
Q Consensus 88 y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~--viGPnc~Gi~~p 165 (331)
|..+..+.++....-+|.++.....+.+.-.|...|++.++++....+..-.. .. +..|.. +.|.+.-.-+.-
T Consensus 56 ~n~i~~l~~~~~~~gvV~aSaGNha~avA~aa~~lGi~~~IvmP~~tp~~K~~----~~-r~~GA~Vi~~g~~~~~a~~~ 130 (504)
T PRK09224 56 YNKMAQLTEEQLARGVITASAGNHAQGVALSAARLGIKAVIVMPVTTPDIKVD----AV-RAFGGEVVLHGDSFDEAYAH 130 (504)
T ss_pred HHHHHhhhHHhcCCEEEEECcCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHH----HH-HhCCCEEEEECCCHHHHHHH
Confidence 44455554332345678888888999999999999999988777665533222 22 456644 445331100000
Q ss_pred C-Cc----ccccCCCCCCCCCCEEEEecChHHHHHHHHHHHhCCCCce-EEEecCCCCCCCCCHHHHHHHhhcCCCccEE
Q 020101 166 G-EC----KIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQS-TCVGIGGDPFNGTNFVDCVTKFIADPQTEGI 239 (331)
Q Consensus 166 ~-~~----~~~~~~~~~~~~G~valisQSG~~~~~~~~~~~~~g~g~s-~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I 239 (331)
. .+ ...+.+ +-.+..++.--|+++.++++.... .+. -++++|+-. .-.+++.++..+ .|+||+|
T Consensus 131 a~~l~~~~g~~~v~----~f~~~~~i~G~gTi~~EI~~q~~~---~~D~vvvpvGgGG-liaGia~~lk~~--~p~~kVi 200 (504)
T PRK09224 131 AIELAEEEGLTFIH----PFDDPDVIAGQGTIAMEILQQHPH---PLDAVFVPVGGGG-LIAGVAAYIKQL--RPEIKVI 200 (504)
T ss_pred HHHHHHhcCCEEeC----CCCCcHHHHhHHHHHHHHHHhccC---CCCEEEEecChhH-HHHHHHHHHHHh--CCCCEEE
Confidence 0 00 011111 111222232237888887765431 244 366666631 012233344433 5899999
Q ss_pred EEEEccCCCcHHHHHHHHHHhCCCCCEEE
Q 020101 240 ILIGEIGGTAEEDAAALIKESGTEKPIVA 268 (331)
Q Consensus 240 ~ly~E~~g~~~~~~~~f~~a~r~~KPVvv 268 (331)
++--|.. ..+..+.+.++|+..
T Consensus 201 gVe~~~~-------~~~~~s~~~g~~~~~ 222 (504)
T PRK09224 201 GVEPEDS-------ACLKAALEAGERVDL 222 (504)
T ss_pred EEEECCC-------hHHHHHHhcCCCccC
Confidence 9887751 234445556677543
No 415
>PRK06141 ornithine cyclodeaminase; Validated
Probab=82.57 E-value=2 Score=41.26 Aligned_cols=81 Identities=12% Similarity=0.074 Sum_probs=53.1
Q ss_pred CCCCeEEEEEcCCCCCCcHHHHHHHH-cCCeEEEEeCCCCCC-ce----e--cC--cccccCHHHhhhcCCCCEEEEecC
Q 020101 39 VDKNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGG-TE----H--LG--LPVFNTVAEAKAETKANASAIYVP 108 (331)
Q Consensus 39 ~~k~~~VaIvGasgk~G~~~~~~l~~-~g~~iv~~VnP~~~g-~~----i--~G--~p~y~sl~dl~~~~~iDlaii~vp 108 (331)
.++..+|+|+|+ |.+|+.+++.+.. .+.+-+...|+.... +. . .| +.++.++++... +.|+++.+||
T Consensus 122 ~~~~~~v~iiG~-G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~--~aDIVi~aT~ 198 (314)
T PRK06141 122 RKDASRLLVVGT-GRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVR--QADIISCATL 198 (314)
T ss_pred CCCCceEEEECC-cHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHh--cCCEEEEeeC
Confidence 456788999998 9999999886655 465433377775421 11 1 13 456678888776 7899988888
Q ss_pred hhhHHHHH-HHHHHcCC
Q 020101 109 PPFAAAAI-LEAMEAEL 124 (331)
Q Consensus 109 ~~~~~~~v-~~~~~~Gi 124 (331)
.. ..++ .+.++.|.
T Consensus 199 s~--~pvl~~~~l~~g~ 213 (314)
T PRK06141 199 ST--EPLVRGEWLKPGT 213 (314)
T ss_pred CC--CCEecHHHcCCCC
Confidence 65 2323 34556666
No 416
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=82.46 E-value=4.5 Score=39.61 Aligned_cols=88 Identities=15% Similarity=0.156 Sum_probs=51.5
Q ss_pred cccccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC--CCceecC----cccccC---HHHhhhcCCCCEEE
Q 020101 34 APAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK--GGTEHLG----LPVFNT---VAEAKAETKANASA 104 (331)
Q Consensus 34 l~~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~--~g~~i~G----~p~y~s---l~dl~~~~~iDlai 104 (331)
|..-+.|+..+|.|+|+ |..|+.+.+.+.+.|++++ .+++.. .+..... .+ +.+ +.++.++.++|+++
T Consensus 4 ~~~~~~~~~~~ilIiG~-g~~~~~~~~a~~~~G~~v~-~~~~~~~~~~~~~ad~~~~~~-~~d~~~l~~~~~~~~id~vi 80 (395)
T PRK09288 4 LGTPLSPSATRVMLLGS-GELGKEVAIEAQRLGVEVI-AVDRYANAPAMQVAHRSHVID-MLDGDALRAVIEREKPDYIV 80 (395)
T ss_pred ccCCCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEeCCCCCchHHhhhheEECC-CCCHHHHHHHHHHhCCCEEE
Confidence 45556678889999998 7777777888888899876 444432 1111111 11 223 44444445789877
Q ss_pred EecChhhHHHHHHHHHHcCCc
Q 020101 105 IYVPPPFAAAAILEAMEAELD 125 (331)
Q Consensus 105 i~vp~~~~~~~v~~~~~~Gi~ 125 (331)
... .+.....+.++.+.|++
T Consensus 81 ~~~-e~~~~~~~~~l~~~g~~ 100 (395)
T PRK09288 81 PEI-EAIATDALVELEKEGFN 100 (395)
T ss_pred Eee-CcCCHHHHHHHHhcCCe
Confidence 443 23223445566666655
No 417
>PRK12827 short chain dehydrogenase; Provisional
Probab=82.40 E-value=3.9 Score=36.51 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=27.3
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT 74 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn 74 (331)
+.+++|.|+++-+|+.+++.|.+.|++++ .++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g~~v~-~~~ 37 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADGADVI-VLD 37 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEE-EEc
Confidence 45688999999999999999999999976 544
No 418
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=82.38 E-value=2.6 Score=41.50 Aligned_cols=110 Identities=20% Similarity=0.244 Sum_probs=67.2
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHc----CCe-EEEEeCCCCCCce--ecCccc-----------c-----cCHHHhhhcC
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEY----GTK-MVGGVTPKKGGTE--HLGLPV-----------F-----NTVAEAKAET 98 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~----g~~-iv~~VnP~~~g~~--i~G~p~-----------y-----~sl~dl~~~~ 98 (331)
..-++|-||||=.|+.+.+.+.+. +.. -+++=|++.-++. ..+.+. - .|+.++..
T Consensus 5 ~yDvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak-- 82 (423)
T KOG2733|consen 5 RYDVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAK-- 82 (423)
T ss_pred eeeEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHh--
Confidence 345788999999999988877662 444 3344555432110 011111 1 24777766
Q ss_pred CCCEEEEecChhh--HHHHHHHHHHcCCcEEEEecCCCCh-hHHH--HHHHHHhccCCcEEEc
Q 020101 99 KANASAIYVPPPF--AAAAILEAMEAELDLVVCITEGIPQ-HDMV--RVKAALNNQSKTRLVG 156 (331)
Q Consensus 99 ~iDlaii~vp~~~--~~~~v~~~~~~Gi~~ivi~t~G~~e-~~~~--~l~~~a~~~~gi~viG 156 (331)
...+++-|+-|-. -..+++.|++.|.+.+=| +|-++ -+.. +--+.| ++.|+-||+
T Consensus 83 ~~~vivN~vGPyR~hGE~VVkacienG~~~vDI--SGEP~f~E~mq~kYhd~A-~ekGVYIVs 142 (423)
T KOG2733|consen 83 QARVIVNCVGPYRFHGEPVVKACIENGTHHVDI--SGEPQFMERMQLKYHDLA-KEKGVYIVS 142 (423)
T ss_pred hhEEEEeccccceecCcHHHHHHHHcCCceecc--CCCHHHHHHHHHHHHHHH-HhcCeEEEe
Confidence 6789998987744 377999999999998544 55443 1111 222455 788876664
No 419
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=82.36 E-value=2.8 Score=39.23 Aligned_cols=107 Identities=11% Similarity=0.065 Sum_probs=59.9
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce----e--cCcccccCHHHhhhcCCCCEEEEecChhhHH
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE----H--LGLPVFNTVAEAKAETKANASAIYVPPPFAA 113 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~----i--~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~ 113 (331)
+..+++|+|+ |.+|+.+...+.+.|+++. .+|..... ++ + .|.....++++... .+.|++|.+||.....
T Consensus 116 ~~k~vliiGa-Gg~g~aia~~L~~~g~~v~-v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~-~~~DivInatp~gm~~ 192 (270)
T TIGR00507 116 PNQRVLIIGA-GGAARAVALPLLKADCNVI-IANRTVSKAEELAERFQRYGEIQAFSMDELPL-HRVDLIINATSAGMSG 192 (270)
T ss_pred cCCEEEEEcC-cHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHHHhhcCceEEechhhhcc-cCccEEEECCCCCCCC
Confidence 3567889999 8899999999998888755 66765310 11 1 02111223444321 2689999999975322
Q ss_pred H-----HHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEE
Q 020101 114 A-----AILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155 (331)
Q Consensus 114 ~-----~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~vi 155 (331)
+ +..+.+..+. .++-+...-.++ .+.+.| ++.|..++
T Consensus 193 ~~~~~~~~~~~l~~~~-~v~D~~y~p~~T---~ll~~A-~~~G~~~v 234 (270)
T TIGR00507 193 NIDEPPVPAEKLKEGM-VVYDMVYNPGET---PFLAEA-KSLGTKTI 234 (270)
T ss_pred CCCCCCCCHHHcCCCC-EEEEeccCCCCC---HHHHHH-HHCCCeee
Confidence 1 1123333332 233333332233 355555 67888776
No 420
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=82.32 E-value=4.4 Score=38.30 Aligned_cols=31 Identities=26% Similarity=0.360 Sum_probs=25.4
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcC--CeEEEEeC
Q 020101 44 RVICQGITGKNGTFHTEQAIEYG--TKMVGGVT 74 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g--~~iv~~Vn 74 (331)
+|.|.|++|-+|+.+++.|.+.| .++++.+.
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R 33 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVR 33 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEc
Confidence 36789999999999999999887 66775553
No 421
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=82.23 E-value=1.5 Score=41.58 Aligned_cols=67 Identities=18% Similarity=0.134 Sum_probs=43.5
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-cee---c----C-cc--cccCHHHhhhcCCCCEEEEecCh
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH---L----G-LP--VFNTVAEAKAETKANASAIYVPP 109 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~i---~----G-~p--~y~sl~dl~~~~~iDlaii~vp~ 109 (331)
+..+|+|+|+ |..|+.++..|.+.|.+-+..+|..... +.. . . .. .+.++.+... +.|++|.+||.
T Consensus 126 ~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~--~aDiVInaTp~ 202 (284)
T PRK12549 126 SLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALA--AADGLVHATPT 202 (284)
T ss_pred cCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhC--CCCEEEECCcC
Confidence 4567899999 8899999999999998534488886521 000 0 0 11 1233443333 68999999886
Q ss_pred h
Q 020101 110 P 110 (331)
Q Consensus 110 ~ 110 (331)
-
T Consensus 203 G 203 (284)
T PRK12549 203 G 203 (284)
T ss_pred C
Confidence 4
No 422
>PRK12829 short chain dehydrogenase; Provisional
Probab=82.22 E-value=7 Score=35.32 Aligned_cols=33 Identities=21% Similarity=0.205 Sum_probs=28.0
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT 74 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn 74 (331)
+..++.|.|++|.+|+.+++.|.+.|++++ .++
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~~V~-~~~ 42 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGARVH-VCD 42 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCEEE-EEe
Confidence 446788999999999999999999999976 444
No 423
>PLN00106 malate dehydrogenase
Probab=82.21 E-value=11 Score=36.62 Aligned_cols=33 Identities=12% Similarity=-0.060 Sum_probs=24.4
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCC
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTP 75 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP 75 (331)
+.||+|+|++|+.|+.+...+...+. +++ .+|.
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~-L~Di 52 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELH-LYDI 52 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEE-EEec
Confidence 45899999999999998887775543 444 5554
No 424
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=82.04 E-value=3 Score=40.28 Aligned_cols=109 Identities=21% Similarity=0.287 Sum_probs=71.6
Q ss_pred CEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC
Q 020101 182 RIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG 261 (331)
Q Consensus 182 ~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r 261 (331)
.|++|--+|.+.. .+.+.+ .++. -+..+.|+....||+++.|+|.+++.|--.-......++++
T Consensus 60 ~Iavi~~~G~I~~--------~~~~~~---~~~~-----~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~ 123 (317)
T COG0616 60 VIAVIHVEGAIVA--------GGGPLR---FIGG-----DDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALK 123 (317)
T ss_pred EEEEEEeeeeeec--------CCCccc---cccH-----HHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHH
Confidence 5999999988742 233333 3333 35789999999999999999999987644444444445543
Q ss_pred ---CCCCEEEEEeCCCCCCCC-------C-----CCCCcccccCCCCCHHHHHHHHHHcCCe
Q 020101 262 ---TEKPIVAFIAGLTAPPGR-------R-----MGHAGAIVSGGKGTAQDKIKTLREAGVT 308 (331)
Q Consensus 262 ---~~KPVvv~k~Grs~~~g~-------~-----~sHtga~a~~~~g~~~~~~a~~~~aGv~ 308 (331)
..|||+++..+-...+|. + .+=|||+.= ......+..++++.|+=
T Consensus 124 ~l~~~~PV~v~v~~~AASGGY~IA~aAd~I~a~p~si~GSIGV--i~~~~~~~~l~~k~Gv~ 183 (317)
T COG0616 124 RLRAKKPVVVSVGGYAASGGYYIALAADKIVADPSSITGSIGV--ISGAPNFEELLEKLGVE 183 (317)
T ss_pred HHhhcCCEEEEECCeecchhhhhhccCCEEEecCCceeeecee--EEecCCHHHHHHhcCCc
Confidence 555999999887665321 1 233566641 11244567888888864
No 425
>PLN02477 glutamate dehydrogenase
Probab=82.02 E-value=6.9 Score=39.31 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=29.9
Q ss_pred CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCC
Q 020101 40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTP 75 (331)
Q Consensus 40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP 75 (331)
.+..+|+|.|. |+.|+..++.|.+.|.++++..|.
T Consensus 204 l~g~~VaIqGf-GnVG~~~A~~L~e~GakVVaVsD~ 238 (410)
T PLN02477 204 IAGQTFVIQGF-GNVGSWAAQLIHEKGGKIVAVSDI 238 (410)
T ss_pred ccCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEECC
Confidence 45678999998 999999999999999999976443
No 426
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.79 E-value=3.3 Score=42.24 Aligned_cols=87 Identities=11% Similarity=0.109 Sum_probs=50.2
Q ss_pred cccccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc---eecCccccc--CHHHhhhcCCCCEEEEecC
Q 020101 34 APAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVFN--TVAEAKAETKANASAIYVP 108 (331)
Q Consensus 34 l~~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~---~i~G~p~y~--sl~dl~~~~~iDlaii~vp 108 (331)
|.+++.. .+|+|+|. |+.|...++.|...|++++ +.|.+.... +-.|+.++. ...+... .+|++|....
T Consensus 6 ~~~~~~~--~~v~V~G~-G~sG~aa~~~L~~~G~~v~-~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~--~~D~VV~SpG 79 (488)
T PRK03369 6 LDPLLPG--APVLVAGA-GVTGRAVLAALTRFGARPT-VCDDDPDALRPHAERGVATVSTSDAVQQIA--DYALVVTSPG 79 (488)
T ss_pred cccccCC--CeEEEEcC-CHHHHHHHHHHHHCCCEEE-EEcCCHHHHHHHHhCCCEEEcCcchHhHhh--cCCEEEECCC
Confidence 5555533 46889999 9999999999999999877 566432100 112554432 1122222 4787776542
Q ss_pred hhhHHHHHHHHHHcCCcE
Q 020101 109 PPFAAAAILEAMEAELDL 126 (331)
Q Consensus 109 ~~~~~~~v~~~~~~Gi~~ 126 (331)
-...-+.++++.++|++.
T Consensus 80 i~~~~p~~~~a~~~gi~v 97 (488)
T PRK03369 80 FRPTAPVLAAAAAAGVPI 97 (488)
T ss_pred CCCCCHHHHHHHHCCCcE
Confidence 222234466666666554
No 427
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=81.74 E-value=6.1 Score=37.73 Aligned_cols=32 Identities=19% Similarity=0.344 Sum_probs=25.0
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCCCC
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKK 77 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP~~ 77 (331)
+|+|+|+ |..|+.++..+...|. +++ .+|.+.
T Consensus 2 kI~IIGa-G~vG~~~a~~l~~~g~~~ei~-l~D~~~ 35 (306)
T cd05291 2 KVVIIGA-GHVGSSFAYSLVNQGIADELV-LIDINE 35 (306)
T ss_pred EEEEECC-CHHHHHHHHHHHhcCCCCEEE-EEeCCc
Confidence 6889998 9999999998888774 555 666544
No 428
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=81.72 E-value=4 Score=41.14 Aligned_cols=81 Identities=21% Similarity=0.272 Sum_probs=47.8
Q ss_pred CCeEEEEEcCCCCCCcH-HHHHHHHcCCeEEEEeCCCCCC--ce--ecCccccc--CHHHhhhcCCCCEEEEecChhhHH
Q 020101 41 KNTRVICQGITGKNGTF-HTEQAIEYGTKMVGGVTPKKGG--TE--HLGLPVFN--TVAEAKAETKANASAIYVPPPFAA 113 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~-~~~~l~~~g~~iv~~VnP~~~g--~~--i~G~p~y~--sl~dl~~~~~iDlaii~vp~~~~~ 113 (331)
+..+|.|+|. |+.|.. +++.|.+.|+++. +.|.+... ++ -.|++++. +.+. .+ ++|++|+.-.-...-
T Consensus 6 ~~~~v~viG~-G~sG~s~~a~~L~~~G~~V~-~~D~~~~~~~~~l~~~gi~~~~~~~~~~-~~--~~d~vv~spgi~~~~ 80 (461)
T PRK00421 6 RIKRIHFVGI-GGIGMSGLAEVLLNLGYKVS-GSDLKESAVTQRLLELGAIIFIGHDAEN-IK--DADVVVYSSAIPDDN 80 (461)
T ss_pred CCCEEEEEEE-chhhHHHHHHHHHhCCCeEE-EECCCCChHHHHHHHCCCEEeCCCCHHH-CC--CCCEEEECCCCCCCC
Confidence 3456889999 889988 6899999999977 66654310 11 12555542 2222 22 588777543112222
Q ss_pred HHHHHHHHcCCcE
Q 020101 114 AAILEAMEAELDL 126 (331)
Q Consensus 114 ~~v~~~~~~Gi~~ 126 (331)
+.++++.++|++.
T Consensus 81 ~~~~~a~~~~i~i 93 (461)
T PRK00421 81 PELVAARELGIPV 93 (461)
T ss_pred HHHHHHHHCCCcE
Confidence 3456666666654
No 429
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=81.65 E-value=6 Score=41.89 Aligned_cols=89 Identities=13% Similarity=0.115 Sum_probs=53.1
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCcee---cCcccc-cCH-------HHhhhcCCCCEEEEe--
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEH---LGLPVF-NTV-------AEAKAETKANASAIY-- 106 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~~i---~G~p~y-~sl-------~dl~~~~~iDlaii~-- 106 (331)
+.++|+|.|++|-+|+.+++.|.+. |+++++..+....-... .++..+ .++ +++.+ ++|+++-+
T Consensus 314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~~~~~~~~~~~~gDl~d~~~~l~~~l~--~~D~ViHlAa 391 (660)
T PRK08125 314 RRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRFLGHPRFHFVEGDISIHSEWIEYHIK--KCDVVLPLVA 391 (660)
T ss_pred cCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhhhcCCCceEEEeccccCcHHHHHHHhc--CCCEEEECcc
Confidence 4577999999999999999999885 79988544322100000 122222 133 33333 68988842
Q ss_pred --cCh--------------hhHHHHHHHHHHcCCcEEEEecC
Q 020101 107 --VPP--------------PFAAAAILEAMEAELDLVVCITE 132 (331)
Q Consensus 107 --vp~--------------~~~~~~v~~~~~~Gi~~ivi~t~ 132 (331)
.|. .....+++.|.+.| +.+|.+++
T Consensus 392 ~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~~~V~~SS 432 (660)
T PRK08125 392 IATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-KRIIFPST 432 (660)
T ss_pred ccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-CeEEEEcc
Confidence 221 12345677888888 55565555
No 430
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=81.61 E-value=2.5 Score=40.91 Aligned_cols=82 Identities=16% Similarity=0.139 Sum_probs=55.7
Q ss_pred CCCeEEEEEcCCCCCCcHHHHHHHH-cCCeEEEEeCCCCCCce--------ecCccc--ccCHHHhhhcCCCCEEEEecC
Q 020101 40 DKNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGGTE--------HLGLPV--FNTVAEAKAETKANASAIYVP 108 (331)
Q Consensus 40 ~k~~~VaIvGasgk~G~~~~~~l~~-~g~~iv~~VnP~~~g~~--------i~G~p~--y~sl~dl~~~~~iDlaii~vp 108 (331)
+...+++|+|+ |.+++.+++.+.. .+++-+...|+.....+ ..|+.+ +.++++... +.|+++.+||
T Consensus 127 ~~~~~v~iiGa-G~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~--~aDiVvtaT~ 203 (326)
T TIGR02992 127 EDSSVVAIFGA-GMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMS--GADIIVTTTP 203 (326)
T ss_pred CCCcEEEEECC-CHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhc--cCCEEEEecC
Confidence 34567899999 9999999998874 57765557787652111 124433 567888776 7899999998
Q ss_pred hhhHHHHH-HHHHHcCCcE
Q 020101 109 PPFAAAAI-LEAMEAELDL 126 (331)
Q Consensus 109 ~~~~~~~v-~~~~~~Gi~~ 126 (331)
... .++ .+.++.|.+.
T Consensus 204 s~~--p~i~~~~l~~g~~i 220 (326)
T TIGR02992 204 SET--PILHAEWLEPGQHV 220 (326)
T ss_pred CCC--cEecHHHcCCCcEE
Confidence 754 333 3566667654
No 431
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=81.54 E-value=8.5 Score=37.07 Aligned_cols=87 Identities=16% Similarity=0.254 Sum_probs=50.8
Q ss_pred CCCeEEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCCCCC---Cc--ee-c------Ccccc-cCHHHhhhcCCCCEEE
Q 020101 40 DKNTRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKG---GT--EH-L------GLPVF-NTVAEAKAETKANASA 104 (331)
Q Consensus 40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP~~~---g~--~i-~------G~p~y-~sl~dl~~~~~iDlai 104 (331)
.+..||+|||+ |+.|..+.-.+...+. +++ .+|.+.. |. ++ . ...++ .+.+++ + +.|++|
T Consensus 4 ~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~-L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~-~--~adivI 78 (315)
T PRK00066 4 KQHNKVVLVGD-GAVGSSYAYALVNQGIADELV-IIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDC-K--DADLVV 78 (315)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEE-EEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHh-C--CCCEEE
Confidence 45678999999 9999998887777665 454 6665431 11 01 1 11222 134443 2 678888
Q ss_pred EecChhh----------------HHHHHHHHHHcCCcEEEEec
Q 020101 105 IYVPPPF----------------AAAAILEAMEAELDLVVCIT 131 (331)
Q Consensus 105 i~vp~~~----------------~~~~v~~~~~~Gi~~ivi~t 131 (331)
++.-... ..++++++.+.+.+.+++.-
T Consensus 79 itag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivv 121 (315)
T PRK00066 79 ITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVA 121 (315)
T ss_pred EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEc
Confidence 7653211 34556666666666654433
No 432
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=81.52 E-value=14 Score=35.60 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCCCC
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKK 77 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP~~ 77 (331)
...||+|||+ |+.|...+-.+...+. +++ .+|.+.
T Consensus 2 ~~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~-LiD~~~ 38 (312)
T cd05293 2 PRNKVTVVGV-GQVGMACAISILAKGLADELV-LVDVVE 38 (312)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEE-EEeCCc
Confidence 3568999998 9999988877766554 455 777654
No 433
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.51 E-value=3.6 Score=41.04 Aligned_cols=82 Identities=18% Similarity=0.218 Sum_probs=49.3
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC--c---e--ecCccccc--CHHHhhhcCCCCEEEEecChhhH
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG--T---E--HLGLPVFN--TVAEAKAETKANASAIYVPPPFA 112 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g--~---~--i~G~p~y~--sl~dl~~~~~iDlaii~vp~~~~ 112 (331)
..+|.|+|+ |+.|...++.|.+.|++++ +.|.+... . . -.|++++. .-.+++.+ .+|++|....-...
T Consensus 5 ~k~v~v~G~-g~~G~s~a~~l~~~G~~V~-~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-~~d~vV~s~gi~~~ 81 (447)
T PRK02472 5 NKKVLVLGL-AKSGYAAAKLLHKLGANVT-VNDGKPFSENPEAQELLEEGIKVICGSHPLELLDE-DFDLMVKNPGIPYT 81 (447)
T ss_pred CCEEEEEee-CHHHHHHHHHHHHCCCEEE-EEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcC-cCCEEEECCCCCCC
Confidence 356789999 5699999999999999876 55533210 1 1 12555542 23344331 38877655411222
Q ss_pred HHHHHHHHHcCCcE
Q 020101 113 AAAILEAMEAELDL 126 (331)
Q Consensus 113 ~~~v~~~~~~Gi~~ 126 (331)
...+++|.++|++.
T Consensus 82 ~~~~~~a~~~~i~v 95 (447)
T PRK02472 82 NPMVEKALEKGIPI 95 (447)
T ss_pred CHHHHHHHHCCCcE
Confidence 35677777887765
No 434
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=81.50 E-value=8 Score=36.72 Aligned_cols=83 Identities=13% Similarity=0.074 Sum_probs=48.2
Q ss_pred EEEEcCCCCCCcHHHHHHHHcCC-eEEEEeCCCCCCc---e--------ecC--cc--cccCHHHhhhcCCCCEEEEecC
Q 020101 45 VICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKGGT---E--------HLG--LP--VFNTVAEAKAETKANASAIYVP 108 (331)
Q Consensus 45 VaIvGasgk~G~~~~~~l~~~g~-~iv~~VnP~~~g~---~--------i~G--~p--~y~sl~dl~~~~~iDlaii~vp 108 (331)
|+|||+ |.+|..+...+...+. +++ .+|++..-. . ..+ .. ...+.+++ . +.|++|++..
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~eV~-L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~l-~--dADiVIit~g 75 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELGDVV-LLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYEDI-A--GSDVVVITAG 75 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCcEEE-EEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHHh-C--CCCEEEEecC
Confidence 468999 9999988887776654 655 666543200 0 001 11 22345554 3 6899998663
Q ss_pred ----------------hhhHHHHHHHHHHcCCcEEEEecC
Q 020101 109 ----------------PPFAAAAILEAMEAELDLVVCITE 132 (331)
Q Consensus 109 ----------------~~~~~~~v~~~~~~Gi~~ivi~t~ 132 (331)
.+...+++++..+..-+.++++.+
T Consensus 76 ~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~s 115 (300)
T cd01339 76 IPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVT 115 (300)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 122445666666777666544443
No 435
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=81.47 E-value=6.1 Score=41.74 Aligned_cols=32 Identities=16% Similarity=0.176 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHc--CCeEEEE
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEY--GTKMVGG 72 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~--g~~iv~~ 72 (331)
+..+|.|.|++|-+|+.+++.|.+. ++++++.
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~ 38 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVL 38 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEE
Confidence 4467899999999999999998876 6787743
No 436
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=81.46 E-value=9.5 Score=35.48 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=24.2
Q ss_pred EEEEcCCCCCCcHHHHHHHHcCC-eEEEEeC
Q 020101 45 VICQGITGKNGTFHTEQAIEYGT-KMVGGVT 74 (331)
Q Consensus 45 VaIvGasgk~G~~~~~~l~~~g~-~iv~~Vn 74 (331)
|+|.|++|-+|+.+++.|.+.|+ +++ .++
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~-~~~ 30 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDIL-VVD 30 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEE-EEe
Confidence 46899999999999999999997 555 554
No 437
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=81.44 E-value=11 Score=36.12 Aligned_cols=29 Identities=31% Similarity=0.535 Sum_probs=25.7
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEE
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGG 72 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~ 72 (331)
+|.|.|++|-+|+.+++.|.+.|+++++.
T Consensus 2 ~vlVTGatGfIG~~l~~~L~~~G~~V~~~ 30 (343)
T TIGR01472 2 IALITGITGQDGSYLAEFLLEKGYEVHGL 30 (343)
T ss_pred eEEEEcCCCcHHHHHHHHHHHCCCEEEEE
Confidence 57889999999999999999999998744
No 438
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.23 E-value=3.2 Score=41.96 Aligned_cols=80 Identities=18% Similarity=0.183 Sum_probs=46.8
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCC--Cce------ecCcccccC--HHHhhhcCCCCEEEEecChh
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG--GTE------HLGLPVFNT--VAEAKAETKANASAIYVPPP 110 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~--g~~------i~G~p~y~s--l~dl~~~~~iDlaii~vp~~ 110 (331)
+..+|+|+|+ |..|...++.|.+.|++++ .+|.+.. ... -.|++++.. .+ ... .+|++|+.+--.
T Consensus 15 ~~~~v~viG~-G~~G~~~A~~L~~~G~~V~-~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~-~~~--~~D~Vv~s~Gi~ 89 (480)
T PRK01438 15 QGLRVVVAGL-GVSGFAAADALLELGARVT-VVDDGDDERHRALAAILEALGATVRLGPGPT-LPE--DTDLVVTSPGWR 89 (480)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEeCCchhhhHHHHHHHHHcCCEEEECCCcc-ccC--CCCEEEECCCcC
Confidence 3457889999 8899888899999999866 6664321 000 136665531 22 222 578888765332
Q ss_pred hHHHHHHHHHHcCCc
Q 020101 111 FAAAAILEAMEAELD 125 (331)
Q Consensus 111 ~~~~~v~~~~~~Gi~ 125 (331)
...+.+..+.+.|++
T Consensus 90 ~~~~~~~~a~~~gi~ 104 (480)
T PRK01438 90 PDAPLLAAAADAGIP 104 (480)
T ss_pred CCCHHHHHHHHCCCe
Confidence 222344455555544
No 439
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=81.14 E-value=5.3 Score=42.22 Aligned_cols=82 Identities=11% Similarity=-0.044 Sum_probs=51.9
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecC------------
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVP------------ 108 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp------------ 108 (331)
+.++|.|.|++|-+|+.+.+.|.+.|+++..... .+ .-...+.....+.++|++|-+.-
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~~~------~l---~d~~~v~~~i~~~~pd~Vih~Aa~~~~~~~~~~~~ 449 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQGIAYEYGKG------RL---EDRSSLLADIRNVKPTHVFNAAGVTGRPNVDWCES 449 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCCCeEEeecc------cc---ccHHHHHHHHHhhCCCEEEECCcccCCCCCChHHh
Confidence 4468999999999999999999988888631211 11 11122444444447888884431
Q ss_pred ---------hhhHHHHHHHHHHcCCcEEEEecC
Q 020101 109 ---------PPFAAAAILEAMEAELDLVVCITE 132 (331)
Q Consensus 109 ---------~~~~~~~v~~~~~~Gi~~ivi~t~ 132 (331)
...+..+++.|.+.|++.+ ++++
T Consensus 450 ~~~~~~~~N~~gt~~l~~a~~~~g~~~v-~~Ss 481 (668)
T PLN02260 450 HKVETIRANVVGTLTLADVCRENGLLMM-NFAT 481 (668)
T ss_pred CHHHHHHHHhHHHHHHHHHHHHcCCeEE-EEcc
Confidence 1124457788888999864 4544
No 440
>PRK08291 ectoine utilization protein EutC; Validated
Probab=81.12 E-value=3 Score=40.37 Aligned_cols=82 Identities=22% Similarity=0.253 Sum_probs=54.6
Q ss_pred CCCeEEEEEcCCCCCCcHHHHHHHH-cCCeEEEEeCCCCCCce--------ecCcc--cccCHHHhhhcCCCCEEEEecC
Q 020101 40 DKNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGGTE--------HLGLP--VFNTVAEAKAETKANASAIYVP 108 (331)
Q Consensus 40 ~k~~~VaIvGasgk~G~~~~~~l~~-~g~~iv~~VnP~~~g~~--------i~G~p--~y~sl~dl~~~~~iDlaii~vp 108 (331)
+...+++|+|+ |.+++.++..+.. .+++.+..+|+....-+ ..|++ .+.+++++.. +.|+++.+||
T Consensus 130 ~~~~~v~IiGa-G~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~--~aDiVi~aT~ 206 (330)
T PRK08291 130 EDASRAAVIGA-GEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVA--GADIIVTTTP 206 (330)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHc--cCCEEEEeeC
Confidence 44567899999 9899999888775 56765557787642101 12444 4678888776 6899999988
Q ss_pred hhhHHHHHH-HHHHcCCcE
Q 020101 109 PPFAAAAIL-EAMEAELDL 126 (331)
Q Consensus 109 ~~~~~~~v~-~~~~~Gi~~ 126 (331)
... .+++ +.++.|.+.
T Consensus 207 s~~--p~i~~~~l~~g~~v 223 (330)
T PRK08291 207 SEE--PILKAEWLHPGLHV 223 (330)
T ss_pred CCC--cEecHHHcCCCceE
Confidence 653 3332 345666554
No 441
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=81.03 E-value=6.8 Score=39.40 Aligned_cols=31 Identities=19% Similarity=0.228 Sum_probs=25.0
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCC
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTP 75 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP 75 (331)
.||.|+|. |..+..+++.+++.|++++ .+++
T Consensus 3 kkili~g~-g~~~~~~~~aa~~lG~~vv-~~~~ 33 (449)
T TIGR00514 3 DKILIANR-GEIALRILRACKELGIKTV-AVHS 33 (449)
T ss_pred ceEEEeCC-CHHHHHHHHHHHHcCCeEE-EEEC
Confidence 47888998 7778888899999999977 5544
No 442
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=80.81 E-value=2.3 Score=34.02 Aligned_cols=66 Identities=20% Similarity=0.112 Sum_probs=43.1
Q ss_pred EEEcCCCCCC---------cHHHHHHHHcCCeEEEEeCCCCCCcee------cCcccccCHHHhhhcCCCCEEEEecChh
Q 020101 46 ICQGITGKNG---------TFHTEQAIEYGTKMVGGVTPKKGGTEH------LGLPVFNTVAEAKAETKANASAIYVPPP 110 (331)
Q Consensus 46 aIvGasgk~G---------~~~~~~l~~~g~~iv~~VnP~~~g~~i------~G~p~y~sl~dl~~~~~iDlaii~vp~~ 110 (331)
+|.|.+=|.+ ..+++.|.+.|+++. ..||....... .+++..+++++..+ ..|++|+.|+.+
T Consensus 1 avlGlafK~n~~D~R~Sp~~~l~~~L~~~g~~V~-~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~D~vvl~t~h~ 77 (106)
T PF03720_consen 1 AVLGLAFKPNTDDIRESPALELIEELKERGAEVS-VYDPYVDEEEIKELGKLEGVEVCDDLEEALK--GADAVVLATDHD 77 (106)
T ss_dssp EEE-SSSSTTSS--TT-HHHHHHHHHHHTT-EEE-EE-TTSHHHHHHHHCHHHCEEEESSHHHHHT--TESEEEESS--G
T ss_pred CeEEEEECCCCcccccCHHHHHHHHHHHCCCEEE-EECCccChHHHHhhCCccceEEecCHHHHhc--CCCEEEEEecCH
Confidence 3577765544 346678888999876 88998732222 35777778888877 799999999887
Q ss_pred hHHH
Q 020101 111 FAAA 114 (331)
Q Consensus 111 ~~~~ 114 (331)
.-.+
T Consensus 78 ~f~~ 81 (106)
T PF03720_consen 78 EFRE 81 (106)
T ss_dssp GGGC
T ss_pred HHhc
Confidence 6554
No 443
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=80.61 E-value=1.7 Score=34.96 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=12.6
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHc
Q 020101 43 TRVICQGITGKNGTFHTEQAIEY 65 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~ 65 (331)
+||.|||- |--.+++...|.+.
T Consensus 1 MkVLviGs-GgREHAia~~l~~s 22 (100)
T PF02844_consen 1 MKVLVIGS-GGREHAIAWKLSQS 22 (100)
T ss_dssp EEEEEEES-SHHHHHHHHHHTTC
T ss_pred CEEEEECC-CHHHHHHHHHHhcC
Confidence 47899997 42223344556554
No 444
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=80.57 E-value=5.1 Score=45.07 Aligned_cols=75 Identities=19% Similarity=0.088 Sum_probs=42.1
Q ss_pred CCeEEEEEcCCCC-C---------CcHHHHHHHHcCCeEEEEeCCCCCCc---eecCcccc------cCHHHhhhcCCCC
Q 020101 41 KNTRVICQGITGK-N---------GTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVF------NTVAEAKAETKAN 101 (331)
Q Consensus 41 k~~~VaIvGasgk-~---------G~~~~~~l~~~g~~iv~~VnP~~~g~---~i~G~p~y------~sl~dl~~~~~iD 101 (331)
+-.+|.|+|+.+. + |+.+.+.|++.|++++ .+|++...- ....-+.| ..+.++.+++++|
T Consensus 6 ~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi-~v~~np~~~~~d~~~ad~~y~ep~~~e~l~~ii~~e~~D 84 (1068)
T PRK12815 6 DIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVV-LVNPNPATIMTDPAPADTVYFEPLTVEFVKRIIAREKPD 84 (1068)
T ss_pred CCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEE-EEeCCcchhhcCcccCCeeEECCCCHHHHHHHHHHhCcC
Confidence 3467999998432 3 4566788999999988 777665210 00111222 1244544445677
Q ss_pred EEEEecChhhHHHHH
Q 020101 102 ASAIYVPPPFAAAAI 116 (331)
Q Consensus 102 laii~vp~~~~~~~v 116 (331)
.++...-.+......
T Consensus 85 ~Iip~~gg~~~l~~a 99 (1068)
T PRK12815 85 ALLATLGGQTALNLA 99 (1068)
T ss_pred EEEECCCCchHHHHH
Confidence 776654444444333
No 445
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=80.51 E-value=4.1 Score=39.51 Aligned_cols=24 Identities=17% Similarity=0.110 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHc
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEY 65 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~ 65 (331)
+.+|+|+||+|..|+.++..|...
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~ 25 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKG 25 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC
Confidence 567999999999999998887763
No 446
>PRK06841 short chain dehydrogenase; Provisional
Probab=80.41 E-value=7 Score=35.25 Aligned_cols=83 Identities=14% Similarity=0.152 Sum_probs=49.4
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCC-EEEEecChhhHHHHHHHH
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKAN-ASAIYVPPPFAAAAILEA 119 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iD-laii~vp~~~~~~~v~~~ 119 (331)
+..+|+|.|+++.+|+.+.+.|.+.|++++ .++.+. +. . ....++... .+. +..+.+.++.....++++
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G~~Vi-~~~r~~--~~---~---~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~ 83 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKGARVA-LLDRSE--DV---A---EVAAQLLGG-NAKGLVCDVSDSQSVEAAVAAV 83 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEE-EEeCCH--HH---H---HHHHHhhCC-ceEEEEecCCCHHHHHHHHHHH
Confidence 345688999999999999999999999876 555433 10 0 111122110 111 223455666667777666
Q ss_pred HHc--CCcEEEEecCCC
Q 020101 120 MEA--ELDLVVCITEGI 134 (331)
Q Consensus 120 ~~~--Gi~~ivi~t~G~ 134 (331)
.+. ++..++ ...|.
T Consensus 84 ~~~~~~~d~vi-~~ag~ 99 (255)
T PRK06841 84 ISAFGRIDILV-NSAGV 99 (255)
T ss_pred HHHhCCCCEEE-ECCCC
Confidence 553 577654 45554
No 447
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=80.36 E-value=9.5 Score=33.78 Aligned_cols=33 Identities=15% Similarity=0.129 Sum_probs=28.0
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCC
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK 76 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~ 76 (331)
.+|+|.|++|.+|+.+++.+.+.|++++ .++.+
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~-~~~r~ 38 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVV-IYDSN 38 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 5688999999999999999999999965 66544
No 448
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=80.25 E-value=12 Score=30.58 Aligned_cols=92 Identities=12% Similarity=0.074 Sum_probs=49.5
Q ss_pred CCcHHHH-HHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhh----HHHHHHHHHHcCCcEEE
Q 020101 54 NGTFHTE-QAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPF----AAAAILEAMEAELDLVV 128 (331)
Q Consensus 54 ~G~~~~~-~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~----~~~~v~~~~~~Gi~~iv 128 (331)
.|..... .++..||++++ ..+. .|.-.-++.+ .+.++|++.++..... +.+.++.+.+.|.+.+.
T Consensus 14 lG~~~~~~~l~~~G~~vi~-lG~~--------vp~e~~~~~a-~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~ 83 (122)
T cd02071 14 RGAKVIARALRDAGFEVIY-TGLR--------QTPEEIVEAA-IQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDIL 83 (122)
T ss_pred HHHHHHHHHHHHCCCEEEE-CCCC--------CCHHHHHHHH-HHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCE
Confidence 4444444 45557999773 1111 2222223333 3458999999975443 44555666666663333
Q ss_pred EecCCCC-hhHHHHHHHHHhccCCcE-EEccCCC
Q 020101 129 CITEGIP-QHDMVRVKAALNNQSKTR-LVGPNCP 160 (331)
Q Consensus 129 i~t~G~~-e~~~~~l~~~a~~~~gi~-viGPnc~ 160 (331)
++-.|-. +++.+++ ++.|+. +++|+|-
T Consensus 84 i~~GG~~~~~~~~~~-----~~~G~d~~~~~~~~ 112 (122)
T cd02071 84 VVGGGIIPPEDYELL-----KEMGVAEIFGPGTS 112 (122)
T ss_pred EEEECCCCHHHHHHH-----HHCCCCEEECCCCC
Confidence 4445533 3333322 467874 8888863
No 449
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=80.22 E-value=6.6 Score=37.62 Aligned_cols=84 Identities=19% Similarity=0.219 Sum_probs=52.6
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCCCCC---Cc--ee-cCcccc-------cCHHHhhhcCCCCEEEEecC
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKG---GT--EH-LGLPVF-------NTVAEAKAETKANASAIYVP 108 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP~~~---g~--~i-~G~p~y-------~sl~dl~~~~~iDlaii~vp 108 (331)
+|+|||+ |..|...+..+...|. +++ .+|++.. +. +. ...+.+ .+.+++ . +.|+++++.+
T Consensus 2 kI~IIGa-G~VG~~~a~~l~~~g~~~ev~-l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l-~--~aDiViita~ 76 (308)
T cd05292 2 KVAIVGA-GFVGSTTAYALLLRGLASEIV-LVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADC-K--GADVVVITAG 76 (308)
T ss_pred EEEEECC-CHHHHHHHHHHHHcCCCCEEE-EEECCchhhhhHHHHHHccccccCCeEEeeCCHHHh-C--CCCEEEEccC
Confidence 6889999 9999998888888773 444 6665541 11 01 111221 245553 3 6899999987
Q ss_pred hhh----------------HHHHHHHHHHcCCcEEEEecC
Q 020101 109 PPF----------------AAAAILEAMEAELDLVVCITE 132 (331)
Q Consensus 109 ~~~----------------~~~~v~~~~~~Gi~~ivi~t~ 132 (331)
... ..+.++++.+.+-+++++..+
T Consensus 77 ~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t 116 (308)
T cd05292 77 ANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT 116 (308)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 531 445667777777777665553
No 450
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=80.03 E-value=7.7 Score=37.51 Aligned_cols=114 Identities=14% Similarity=0.075 Sum_probs=59.6
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCH-----------HHhhhcCCCCEEEEecChhhH
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTV-----------AEAKAETKANASAIYVPPPFA 112 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl-----------~dl~~~~~iDlaii~vp~~~~ 112 (331)
+|.|||+ |-.|..++++|...|+.-+..+|+.....+-.+...+-+- .+...+.++++-|........
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~ 79 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK 79 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence 4789999 8899999999999898755588887643222333322111 111222234444433222111
Q ss_pred H-HHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCc
Q 020101 113 A-AAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGV 162 (331)
Q Consensus 113 ~-~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi 162 (331)
. ....+.. .+...|+. +. -+.+....+-+.+ +++++.++--.+.|+
T Consensus 80 ~~~~~~~f~-~~~DvVv~-a~-Dn~~ar~~in~~c-~~~~ip~I~~gt~G~ 126 (312)
T cd01489 80 DPDFNVEFF-KQFDLVFN-AL-DNLAARRHVNKMC-LAADVPLIESGTTGF 126 (312)
T ss_pred CccchHHHH-hcCCEEEE-CC-CCHHHHHHHHHHH-HHCCCCEEEEecCcc
Confidence 1 1111222 24555442 22 2233333455666 677888776666664
No 451
>PRK07454 short chain dehydrogenase; Provisional
Probab=80.03 E-value=3.9 Score=36.67 Aligned_cols=86 Identities=19% Similarity=0.170 Sum_probs=50.4
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCE-EEEecChhhHHHHHHHH
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANA-SAIYVPPPFAAAAILEA 119 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDl-aii~vp~~~~~~~v~~~ 119 (331)
+..+++|.|+++.+|+.+++.+.+.|++++ .++.+. +... .....+.+... +++. ..+.+..+.....++++
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~-~~~r~~--~~~~--~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~ 77 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLA-LVARSQ--DALE--ALAAELRSTGV--KAAAYSIDLSNPEAIAPGIAEL 77 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEeCCH--HHHH--HHHHHHHhCCC--cEEEEEccCCCHHHHHHHHHHH
Confidence 345678899999999999999999999876 555432 1111 01111111111 2222 23455667777777776
Q ss_pred HHc--CCcEEEEecCCC
Q 020101 120 MEA--ELDLVVCITEGI 134 (331)
Q Consensus 120 ~~~--Gi~~ivi~t~G~ 134 (331)
.++ ++..++ ...|.
T Consensus 78 ~~~~~~id~lv-~~ag~ 93 (241)
T PRK07454 78 LEQFGCPDVLI-NNAGM 93 (241)
T ss_pred HHHcCCCCEEE-ECCCc
Confidence 653 477655 45554
No 452
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=79.87 E-value=2.7 Score=42.05 Aligned_cols=35 Identities=17% Similarity=0.325 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCC-eEEEEeCCCC
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKK 77 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~-~iv~~VnP~~ 77 (331)
+..+|+|+|+ |.+|+.+++.+...|. +++ .+|+..
T Consensus 179 ~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~-v~~rs~ 214 (417)
T TIGR01035 179 KGKKALLIGA-GEMGELVAKHLLRKGVGKIL-IANRTY 214 (417)
T ss_pred cCCEEEEECC-hHHHHHHHHHHHHCCCCEEE-EEeCCH
Confidence 4567899999 9999999999998885 454 777764
No 453
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=79.76 E-value=28 Score=32.56 Aligned_cols=116 Identities=14% Similarity=0.146 Sum_probs=69.9
Q ss_pred CCCCCCccccc-----CCCCeEEEEEcCCCCCC-------cHHHH----HHHHcCCeEEEEeCCCCCCceecCcccccCH
Q 020101 28 TTAPPPAPAVF-----VDKNTRVICQGITGKNG-------TFHTE----QAIEYGTKMVGGVTPKKGGTEHLGLPVFNTV 91 (331)
Q Consensus 28 ~~~~~~l~~ll-----~~k~~~VaIvGasgk~G-------~~~~~----~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl 91 (331)
...+|.++.++ ....+++.++|=..+.| ...+| ++.-..+++| .||-.. |=+.+|..+-
T Consensus 79 fk~~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~~allR~~l~~l~~~~~e~V-ivDtEA-GiEHfgRg~~--- 153 (255)
T COG3640 79 FKENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPMNALLRRLLRHLILNRYEVV-IVDTEA-GIEHFGRGTI--- 153 (255)
T ss_pred cccCcchhhhhHHHhhhcCCccEEEeccccCCCCcccchHHHHHHHHHHHHhcccCcEE-EEeccc-chhhhccccc---
Confidence 34446666665 44568999998544333 23334 3333347777 788654 3455555432
Q ss_pred HHhhhcCCCCEEEEecCh-hh----HHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101 92 AEAKAETKANASAIYVPP-PF----AAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156 (331)
Q Consensus 92 ~dl~~~~~iDlaii~vp~-~~----~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG 156 (331)
+ .+|++++.+-| .. +..+.+-+-+.|++.++++...+.++ ...+.+.+ .+.+..++|
T Consensus 154 ----~--~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~-e~~~~~~~-~~~~~~vlg 215 (255)
T COG3640 154 ----E--GVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE-EELLRELA-EELGLEVLG 215 (255)
T ss_pred ----c--CCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch-hHHHHhhh-hccCCeEEE
Confidence 2 68988877755 33 34444556678999989888888766 33344444 567776665
No 454
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=79.72 E-value=8.9 Score=36.61 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=25.2
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVT 74 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn 74 (331)
+|+|.|++|-+|+.+++.|.+.|.+.+..++
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~~ 32 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVD 32 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCCeEEEec
Confidence 6889999999999999999988876343454
No 455
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=79.69 E-value=15 Score=41.33 Aligned_cols=85 Identities=13% Similarity=0.075 Sum_probs=52.9
Q ss_pred CCeEEEEEcCCC-CCCcHH---------HHHHHHcCCeEEEEeCCCC--CCce--ecC----cccc-cCHHHhhhcCCCC
Q 020101 41 KNTRVICQGITG-KNGTFH---------TEQAIEYGTKMVGGVTPKK--GGTE--HLG----LPVF-NTVAEAKAETKAN 101 (331)
Q Consensus 41 k~~~VaIvGasg-k~G~~~---------~~~l~~~g~~iv~~VnP~~--~g~~--i~G----~p~y-~sl~dl~~~~~iD 101 (331)
...+|.|+|+.. ++|+.+ ++.+++.|++++ .+|.+. .... ... .|.+ ..+.++.++++||
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G~~vI-~vn~npetvs~~~~~aD~~y~ep~~~e~vl~I~~~e~~d 632 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYETI-MINNNPETVSTDYDTADRLYFEPLTLEDVLNVAEAENIK 632 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHHcCCEEE-EEeCCccccccccccCceEEEccCCHHHHHHHHhhcCCC
Confidence 457899999843 466533 678888999966 555443 1111 011 1222 2344455566899
Q ss_pred EEEEecChhhHHHHHHHHHHcCCcE
Q 020101 102 ASAIYVPPPFAAAAILEAMEAELDL 126 (331)
Q Consensus 102 laii~vp~~~~~~~v~~~~~~Gi~~ 126 (331)
.++..........+.+.+.+.|++.
T Consensus 633 gVI~~~g~~~~~~la~~le~~Gi~i 657 (1068)
T PRK12815 633 GVIVQFGGQTAINLAKGLEEAGLTI 657 (1068)
T ss_pred EEEEecCcHHHHHHHHHHHHCCCeE
Confidence 9887666666667777787888875
No 456
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=79.52 E-value=6.1 Score=35.98 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=28.7
Q ss_pred CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101 40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 77 (331)
Q Consensus 40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~ 77 (331)
=+..+|+|||. |+.+..=++.+.+.|-+++ .|.|..
T Consensus 10 l~~k~VlvvGg-G~va~rKa~~ll~~ga~v~-Vvs~~~ 45 (210)
T COG1648 10 LEGKKVLVVGG-GSVALRKARLLLKAGADVT-VVSPEF 45 (210)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhcCCEEE-EEcCCc
Confidence 35567899998 7777777788889999877 888865
No 457
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=79.50 E-value=15 Score=37.64 Aligned_cols=101 Identities=17% Similarity=0.126 Sum_probs=63.2
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEE-------eCCCCCCc-e----------ecCcccccCHHH---------
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGG-------VTPKKGGT-E----------HLGLPVFNTVAE--------- 93 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~-------VnP~~~g~-~----------i~G~p~y~sl~d--------- 93 (331)
+..+++|-|. |+.|....+.+.+.|-.+++. +||...-. + +.+++-++...+
T Consensus 250 kgkr~~i~G~-Gnv~~~aa~~l~~~G~kvvavsD~~G~l~np~Gid~~eL~~~~~~k~~i~~f~~~~~~~~~~~~~~~~~ 328 (514)
T KOG2250|consen 250 KGKRVVIQGF-GNVGGHAAKKLSEKGAKVVAVSDSKGVLINPDGIDIEELLDLADEKKTIKSFDGAKLSYEGYIAGLPPW 328 (514)
T ss_pred CceEEEEeCC-CchHHHHHHHHHhcCCEEEEEEcCceeEECCCCCCHHHHHHHHHhhccccccccccccCccccccCcch
Confidence 4567766665 999999999999988776653 77775311 1 223332221111
Q ss_pred hhhcCCCCEEEEe-cChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHH
Q 020101 94 AKAETKANASAIY-VPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVK 143 (331)
Q Consensus 94 l~~~~~iDlaii~-vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~ 143 (331)
... .++|+++=| +-.+...+.+.+..++|.|.|+=.+-+++..+..++.
T Consensus 329 ~~v-~~~DI~vPCA~qn~I~~~nA~~lvak~~~~IvEGAN~ptTpeA~~vl 378 (514)
T KOG2250|consen 329 TLV-EKCDILVPCATQNEITGENAKALVAKGCKYIVEGANMPTTPEADEVL 378 (514)
T ss_pred hhH-hhCcEEeecCccCcccHhhHHHHHhcCCcEEEecCCCCCChhHHHHH
Confidence 111 268988844 4556678889999999999876555555544444443
No 458
>PRK08462 biotin carboxylase; Validated
Probab=79.47 E-value=6.7 Score=39.31 Aligned_cols=30 Identities=13% Similarity=0.131 Sum_probs=24.2
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEE
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGG 72 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~ 72 (331)
..||.|+|. |-.+-.+++.+++.|+++++.
T Consensus 4 ~k~ili~~~-g~~~~~~~~~~~~~G~~~v~~ 33 (445)
T PRK08462 4 IKRILIANR-GEIALRAIRTIQEMGKEAIAI 33 (445)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHcCCCEEEE
Confidence 567889998 767777888899999987744
No 459
>PRK05693 short chain dehydrogenase; Provisional
Probab=79.42 E-value=9.3 Score=35.07 Aligned_cols=77 Identities=17% Similarity=0.100 Sum_probs=50.5
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCE-EEEecChhhHHHHHHHHHHc
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANA-SAIYVPPPFAAAAILEAMEA 122 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDl-aii~vp~~~~~~~v~~~~~~ 122 (331)
+++|.|+++-+|+.+++.+.+.|++++ .++.+. +. ++++... +++. ..+.+..+...+.++++.+.
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~-~~~r~~--~~---------~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~ 69 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVW-ATARKA--ED---------VEALAAA-GFTAVQLDVNDGAALARLAEELEAE 69 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEE-EEeCCH--HH---------HHHHHHC-CCeEEEeeCCCHHHHHHHHHHHHHh
Confidence 477899999999999999999999977 555432 11 2232221 2333 34666777778888777654
Q ss_pred --CCcEEEEecCCC
Q 020101 123 --ELDLVVCITEGI 134 (331)
Q Consensus 123 --Gi~~ivi~t~G~ 134 (331)
++..++. ..|+
T Consensus 70 ~~~id~vi~-~ag~ 82 (274)
T PRK05693 70 HGGLDVLIN-NAGY 82 (274)
T ss_pred cCCCCEEEE-CCCC
Confidence 4777554 5553
No 460
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=79.38 E-value=19 Score=34.52 Aligned_cols=32 Identities=13% Similarity=0.150 Sum_probs=25.1
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCC
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTP 75 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP 75 (331)
++|+|+|++|..|...+..+...|. +++ .+|+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~-lvd~ 34 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEIN-LISR 34 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEE-EEEC
Confidence 3689999999999999988888764 455 5554
No 461
>PRK08628 short chain dehydrogenase; Provisional
Probab=79.35 E-value=6.4 Score=35.65 Aligned_cols=82 Identities=17% Similarity=0.123 Sum_probs=47.1
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhc-CCCCE-EEEecChhhHHHHHHHH
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAE-TKANA-SAIYVPPPFAAAAILEA 119 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~-~~iDl-aii~vp~~~~~~~v~~~ 119 (331)
...++|.|+++.+|+.+++.|.+.|++++ .+..+. ... + ..+++.+. .++.. ..+.+.++.....++++
T Consensus 7 ~~~ilItGasggiG~~la~~l~~~G~~v~-~~~r~~--~~~---~---~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 77 (258)
T PRK08628 7 DKVVIVTGGASGIGAAISLRLAEEGAIPV-IFGRSA--PDD---E---FAEELRALQPRAEFVQVDLTDDAQCRDAVEQT 77 (258)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCCcEE-EEcCCh--hhH---H---HHHHHHhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 34678899999999999999999999866 443322 111 1 12232211 01222 22344555566666665
Q ss_pred HHc--CCcEEEEecCC
Q 020101 120 MEA--ELDLVVCITEG 133 (331)
Q Consensus 120 ~~~--Gi~~ivi~t~G 133 (331)
.+. ++..++. ..|
T Consensus 78 ~~~~~~id~vi~-~ag 92 (258)
T PRK08628 78 VAKFGRIDGLVN-NAG 92 (258)
T ss_pred HHhcCCCCEEEE-CCc
Confidence 553 4777554 445
No 462
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=79.29 E-value=9.3 Score=38.26 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=24.7
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVT 74 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn 74 (331)
.+|.|+|. |..+..+++.+++.|++++ .++
T Consensus 3 k~iLi~g~-g~~a~~i~~aa~~~G~~vv-~~~ 32 (451)
T PRK08591 3 DKILIANR-GEIALRIIRACKELGIKTV-AVH 32 (451)
T ss_pred ceEEEECC-CHHHHHHHHHHHHcCCeEE-EEc
Confidence 56889998 7788888999999999877 553
No 463
>PRK07877 hypothetical protein; Provisional
Probab=79.06 E-value=6.1 Score=42.55 Aligned_cols=108 Identities=14% Similarity=0.100 Sum_probs=61.0
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCCCCCCceec----------CcccccCHHHhhhcCCCCEEEEecC
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKGGTEHL----------GLPVFNTVAEAKAETKANASAIYVP 108 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP~~~g~~i~----------G~p~y~sl~dl~~~~~iDlaii~vp 108 (331)
+..+|+|+|+ | .|..++.+|...|. ++. .||......+.. |.+-....++-..+.++++-|.+.+
T Consensus 106 ~~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~-lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~ 182 (722)
T PRK07877 106 GRLRIGVVGL-S-VGHAIAHTLAAEGLCGELR-LADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFT 182 (722)
T ss_pred hcCCEEEEEe-c-HHHHHHHHHHHccCCCeEE-EEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEe
Confidence 4566889999 7 89999999998873 455 666654311111 2211111222233345677776666
Q ss_pred hhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEE
Q 020101 109 PPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155 (331)
Q Consensus 109 ~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~vi 155 (331)
.....+.+++.++ ++..|+-.+..|.. -..+.+.| .++++.+|
T Consensus 183 ~~i~~~n~~~~l~-~~DlVvD~~D~~~~--R~~ln~~a-~~~~iP~i 225 (722)
T PRK07877 183 DGLTEDNVDAFLD-GLDVVVEECDSLDV--KVLLREAA-RARRIPVL 225 (722)
T ss_pred ccCCHHHHHHHhc-CCCEEEECCCCHHH--HHHHHHHH-HHcCCCEE
Confidence 6666666666654 56766655544421 11233445 56676643
No 464
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=78.99 E-value=22 Score=33.37 Aligned_cols=108 Identities=12% Similarity=-0.005 Sum_probs=65.5
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcC-CeEEEEeC-----CCCC--CceecCcccccCHHHhhhcCCCCEEEEecChhh--
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYG-TKMVGGVT-----PKKG--GTEHLGLPVFNTVAEAKAETKANASAIYVPPPF-- 111 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g-~~iv~~Vn-----P~~~--g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~-- 111 (331)
..+|.|+|. ..-++.+.+.|...+ +.++.-.. |... ...+.|.=-..-+.+..++.++|++|++|.|-+
T Consensus 2 ~~~ilvlGG-T~Dar~la~~L~~~~~~~~~ss~t~~g~~l~~~~~~~~~~G~l~~e~l~~~l~e~~i~llIDATHPyAa~ 80 (257)
T COG2099 2 MMRILLLGG-TSDARALAKKLAAAPVDIILSSLTGYGAKLAEQIGPVRVGGFLGAEGLAAFLREEGIDLLIDATHPYAAR 80 (257)
T ss_pred CceEEEEec-cHHHHHHHHHhhccCccEEEEEcccccccchhccCCeeecCcCCHHHHHHHHHHcCCCEEEECCChHHHH
Confidence 356888997 445677788887765 33331111 1110 012334334445777777789999999999855
Q ss_pred -HHHHHHHHHHcCCcEEEEecCCCCh--------hHHHHHHHHHhccCC
Q 020101 112 -AAAAILEAMEAELDLVVCITEGIPQ--------HDMVRVKAALNNQSK 151 (331)
Q Consensus 112 -~~~~v~~~~~~Gi~~ivi~t~G~~e--------~~~~~l~~~a~~~~g 151 (331)
..++++.|-+.||+.+-.--++... .+.+++.+.+ ++.+
T Consensus 81 iS~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~ea~~~~-~~~~ 128 (257)
T COG2099 81 ISQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIEEAAEAA-KQLG 128 (257)
T ss_pred HHHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHHHHHHHH-hccC
Confidence 4668888999999985543333322 2355566655 4454
No 465
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.89 E-value=4.2 Score=40.74 Aligned_cols=81 Identities=11% Similarity=0.083 Sum_probs=47.8
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc---ee----cCcccccC--HHHhhhcCCCCEEEEecChhhH
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EH----LGLPVFNT--VAEAKAETKANASAIYVPPPFA 112 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~---~i----~G~p~y~s--l~dl~~~~~iDlaii~vp~~~~ 112 (331)
..+|.|+|+ |..|...++.|.+.|++++ +.|.+..-+ .. .|++++.. -++... +.|++|....-...
T Consensus 5 ~~~~~v~G~-g~~G~~~a~~l~~~g~~v~-~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~--~~d~vv~spgi~~~ 80 (445)
T PRK04308 5 NKKILVAGL-GGTGISMIAYLRKNGAEVA-AYDAELKPERVAQIGKMFDGLVFYTGRLKDALDN--GFDILALSPGISER 80 (445)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHh--CCCEEEECCCCCCC
Confidence 346889999 7899888999999999876 555432101 11 26665532 122223 57888865422222
Q ss_pred HHHHHHHHHcCCcE
Q 020101 113 AAAILEAMEAELDL 126 (331)
Q Consensus 113 ~~~v~~~~~~Gi~~ 126 (331)
-+.++.|.++|++.
T Consensus 81 ~p~~~~a~~~~i~v 94 (445)
T PRK04308 81 QPDIEAFKQNGGRV 94 (445)
T ss_pred CHHHHHHHHcCCcE
Confidence 23456666666553
No 466
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=78.83 E-value=16 Score=36.62 Aligned_cols=108 Identities=15% Similarity=0.129 Sum_probs=65.2
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce--e---c---CcccccCHHHhhhc-CCCCEEEEecCh----h
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--H---L---GLPVFNTVAEAKAE-TKANASAIYVPP----P 110 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~--i---~---G~p~y~sl~dl~~~-~~iDlaii~vp~----~ 110 (331)
.|.|||. +-||+.++-|+.+.||++. ..|......+ + . .+.-+.|++|+... ..|.-+++-+.+ +
T Consensus 5 ~iGviGL-aVMG~NLaLNi~~~G~~Va-vyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD 82 (473)
T COG0362 5 DIGVIGL-AVMGSNLALNIADHGYTVA-VYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVD 82 (473)
T ss_pred ceeeEeh-hhhhHHHHHHHHhcCceEE-EEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHH
Confidence 3677998 8899999999999999976 7776653111 0 1 12223357777543 246666655544 4
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCC--hhHHHHHHHHHhccCCcEEEccC
Q 020101 111 FAAAAILEAMEAELDLVVCITEGIP--QHDMVRVKAALNNQSKTRLVGPN 158 (331)
Q Consensus 111 ~~~~~v~~~~~~Gi~~ivi~t~G~~--e~~~~~l~~~a~~~~gi~viGPn 158 (331)
...+.+.-.+++| - |++-.|-+ .+..++..++ ++.|+.+||-.
T Consensus 83 ~~I~~L~p~Le~g--D-IiIDGGNs~y~DT~RR~~eL--~~~Gi~FvG~G 127 (473)
T COG0362 83 AVIEQLLPLLEKG--D-IIIDGGNSHYKDTIRRNKEL--SEKGILFVGMG 127 (473)
T ss_pred HHHHHHHhhcCCC--C-EEEeCCCcCCchHHHHHHHH--HhcCCeEEecc
Confidence 4444444455554 2 34566644 2334444444 58899999954
No 467
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=78.81 E-value=8.7 Score=38.08 Aligned_cols=92 Identities=13% Similarity=0.025 Sum_probs=56.3
Q ss_pred eEEEEEcCCCCCCcHHHHH----HHHcCCeEEE--EeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHH
Q 020101 43 TRVICQGITGKNGTFHTEQ----AIEYGTKMVG--GVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI 116 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~----l~~~g~~iv~--~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v 116 (331)
.+|+++.-.+..|+..++. +.+.|..++. .+.++.. +.......+..+..+....++|++|++...+.+..++
T Consensus 173 ~~Vaii~~~d~yG~~~~~~f~~~~~~~GicIa~~e~~~~~~~-~~~~~~~~~~~~~~~ik~~~a~vVvv~~~~~~~~~l~ 251 (403)
T cd06361 173 NWVGIIITDDDYGRSALETFIIQAEANGVCIAFKEILPASLS-DNTKLNRIIRTTEKIIEENKVNVIVVFARQFHVFLLF 251 (403)
T ss_pred cEEEEEEecCchHHHHHHHHHHHHHHCCeEEEEEEEecCccC-cchhHHHHHHHHHHHHhcCCCeEEEEEeChHHHHHHH
Confidence 5566776555667665543 3445666543 1333210 1100112233333333334799999999999999999
Q ss_pred HHHHHcCCcEEEEecCCCC
Q 020101 117 LEAMEAELDLVVCITEGIP 135 (331)
Q Consensus 117 ~~~~~~Gi~~ivi~t~G~~ 135 (331)
+++.+.|++.+|+.+.+..
T Consensus 252 ~~a~~~g~~~~wigs~~w~ 270 (403)
T cd06361 252 NKAIERNINKVWIASDNWS 270 (403)
T ss_pred HHHHHhCCCeEEEEECccc
Confidence 9999999998898888764
No 468
>PRK08267 short chain dehydrogenase; Provisional
Probab=78.65 E-value=6.6 Score=35.65 Aligned_cols=78 Identities=18% Similarity=0.124 Sum_probs=49.4
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhc---CCCCE-EEEecChhhHHHHHHHH
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAE---TKANA-SAIYVPPPFAAAAILEA 119 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~---~~iDl-aii~vp~~~~~~~v~~~ 119 (331)
+++|.|+|+.+|+.+.+.+.+.|++++ .++.+. +. ++++..+ ..++. .++.+..+.+.+.++++
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G~~V~-~~~r~~--~~---------~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 70 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEGWRVG-AYDINE--AG---------LAALAAELGAGNAWTGALDVTDRAAWDAALADF 70 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEE-EEeCCH--HH---------HHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 578899999999999999999999877 555433 11 1111110 12222 34556777777777777
Q ss_pred HHc---CCcEEEEecCCC
Q 020101 120 MEA---ELDLVVCITEGI 134 (331)
Q Consensus 120 ~~~---Gi~~ivi~t~G~ 134 (331)
.+. .+..++. ..|.
T Consensus 71 ~~~~~~~id~vi~-~ag~ 87 (260)
T PRK08267 71 AAATGGRLDVLFN-NAGI 87 (260)
T ss_pred HHHcCCCCCEEEE-CCCC
Confidence 653 5777554 4443
No 469
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=78.43 E-value=7.9 Score=38.53 Aligned_cols=82 Identities=17% Similarity=0.120 Sum_probs=55.0
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHc--CCeEEEE---------------eCCCCCCceec---------------C--cccc
Q 020101 43 TRVICQGITGKNGTFHTEQAIEY--GTKMVGG---------------VTPKKGGTEHL---------------G--LPVF 88 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~--g~~iv~~---------------VnP~~~g~~i~---------------G--~p~y 88 (331)
.+|+|.|+||.+|+..++.++++ .|++++. .+|+.. -+. | .+++
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~~n~~~L~~q~~~f~p~~v--~i~d~~~~~~l~~~l~~~~~~~~v~ 79 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAGKNVALMVEQILEFRPKFV--AIDDEASLKDLKTMLQQQGSRTEVL 79 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHcCCCEE--EEcCHHHHHHHHHHhhcCCCCcEEE
Confidence 46888999999999988887764 4777754 223221 011 1 2233
Q ss_pred c---CHHHhhhcCCCCEEEEecChhhHHHHHHHHHHcCCcE
Q 020101 89 N---TVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDL 126 (331)
Q Consensus 89 ~---sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ 126 (331)
. .+.++.+..++|+++.++..-.-..-.-+++++|.+.
T Consensus 80 ~G~~~l~~l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~i 120 (389)
T TIGR00243 80 VGEEGICEMAALEDVDQVMNAIVGAAGLLPTLAAIRAGKTI 120 (389)
T ss_pred ECHHHHHHHHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcE
Confidence 3 2444444456899999998888888888889999664
No 470
>PRK06057 short chain dehydrogenase; Provisional
Probab=78.33 E-value=9.8 Score=34.45 Aligned_cols=80 Identities=15% Similarity=0.061 Sum_probs=48.5
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCC-EEEEecChhhHHHHHHHHH
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKAN-ASAIYVPPPFAAAAILEAM 120 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iD-laii~vp~~~~~~~v~~~~ 120 (331)
..+|+|+|+++.+|+.+.+.+.+.|++++ .++.+. .. +++..++...+ +..+.+..+.....++++.
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~~v~-~~~r~~--~~---------~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 74 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGATVV-VGDIDP--EA---------GKAAADEVGGLFVPTDVTDEDAVNALFDTAA 74 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEE-EEeCCH--HH---------HHHHHHHcCCcEEEeeCCCHHHHHHHHHHHH
Confidence 35688999999999999999999999876 444322 10 11111110111 3335566667777777665
Q ss_pred Hc--CCcEEEEecCCC
Q 020101 121 EA--ELDLVVCITEGI 134 (331)
Q Consensus 121 ~~--Gi~~ivi~t~G~ 134 (331)
+. ++..++. ..|+
T Consensus 75 ~~~~~id~vi~-~ag~ 89 (255)
T PRK06057 75 ETYGSVDIAFN-NAGI 89 (255)
T ss_pred HHcCCCCEEEE-CCCc
Confidence 43 4777554 4453
No 471
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=78.30 E-value=8.9 Score=38.83 Aligned_cols=85 Identities=14% Similarity=0.005 Sum_probs=57.9
Q ss_pred eEEEEEcCCCCCCcHHHHHHHH---cCCeEEEEeCCCCCC---------cee------------------cCc--cccc-
Q 020101 43 TRVICQGITGKNGTFHTEQAIE---YGTKMVGGVTPKKGG---------TEH------------------LGL--PVFN- 89 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~---~g~~iv~~VnP~~~g---------~~i------------------~G~--p~y~- 89 (331)
+||+|-|. |++|+.++|.+.+ .+++++ .||-...- +.+ .|. +++.
T Consensus 76 ikVgINGF-GRIGR~vlR~~~~~~~~~ievV-aINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~~~ 153 (442)
T PLN02237 76 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVV-VVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVVSN 153 (442)
T ss_pred EEEEEECC-ChHHHHHHHHHHHccCCCeEEE-EECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEEEEEc
Confidence 89999999 9999999998653 357888 44421110 011 121 1221
Q ss_pred -CHHHhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEE
Q 020101 90 -TVAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVC 129 (331)
Q Consensus 90 -sl~dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi 129 (331)
+.++++= +.++|+++.++......+.+...++.|.+.|++
T Consensus 154 ~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~i 195 (442)
T PLN02237 154 RDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 195 (442)
T ss_pred CCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEE
Confidence 2334432 247999999999999999999999999998664
No 472
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=78.29 E-value=2.9 Score=33.28 Aligned_cols=76 Identities=25% Similarity=0.215 Sum_probs=45.7
Q ss_pred EEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-c--eecCccccc-------CHHHhhhcCCCCEEEEecChhhHH-
Q 020101 45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-T--EHLGLPVFN-------TVAEAKAETKANASAIYVPPPFAA- 113 (331)
Q Consensus 45 VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~--~i~G~p~y~-------sl~dl~~~~~iDlaii~vp~~~~~- 113 (331)
|+|+|. |++|+.+++.|.+.+.+++ .|+.+... + ...|++++. .++++.- .+.|.++++++.+..-
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~~~~vv-vid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i-~~a~~vv~~~~~d~~n~ 77 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEGGIDVV-VIDRDPERVEELREEGVEVIYGDATDPEVLERAGI-EKADAVVILTDDDEENL 77 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTTSEEE-EEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTG-GCESEEEEESSSHHHHH
T ss_pred eEEEcC-CHHHHHHHHHHHhCCCEEE-EEECCcHHHHHHHhcccccccccchhhhHHhhcCc-cccCEEEEccCCHHHHH
Confidence 578999 8999999999999766777 66665410 0 123444332 2333322 2689999998776543
Q ss_pred HHHHHHHHcC
Q 020101 114 AAILEAMEAE 123 (331)
Q Consensus 114 ~~v~~~~~~G 123 (331)
.++..+-+.+
T Consensus 78 ~~~~~~r~~~ 87 (116)
T PF02254_consen 78 LIALLARELN 87 (116)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHC
Confidence 3444444433
No 473
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=78.24 E-value=5.9 Score=39.42 Aligned_cols=71 Identities=25% Similarity=0.207 Sum_probs=49.4
Q ss_pred CCeEEEEEcCCCCCC---------cHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhh
Q 020101 41 KNTRVICQGITGKNG---------TFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPF 111 (331)
Q Consensus 41 k~~~VaIvGasgk~G---------~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~ 111 (331)
+..+|+|.|.+-|++ ..+++.|.+.|.++. ..||..........+...++++..+ +.|++|+.|+.+.
T Consensus 312 ~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~-~~DP~~~~~~~~~~~~~~~~~~~~~--~ad~~v~~t~~~~ 388 (411)
T TIGR03026 312 KGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVK-AYDPLVPEEEVKGLPLIDDLEEALK--GADALVILTDHDE 388 (411)
T ss_pred cCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEE-EECCCCChhhhhhcccCCCHHHHHh--CCCEEEEecCCHH
Confidence 456789999987765 245677888899876 8899753222223333467777776 7899999998776
Q ss_pred HHH
Q 020101 112 AAA 114 (331)
Q Consensus 112 ~~~ 114 (331)
..+
T Consensus 389 ~~~ 391 (411)
T TIGR03026 389 FKD 391 (411)
T ss_pred Hhc
Confidence 543
No 474
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=78.21 E-value=1.9 Score=37.96 Aligned_cols=73 Identities=16% Similarity=0.106 Sum_probs=44.7
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce-----e----------------------cCcccccCHHHhhh
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-----H----------------------LGLPVFNTVAEAKA 96 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~-----i----------------------~G~p~y~sl~dl~~ 96 (331)
+|+|+|+ |.||+.+...+...|+++. .+|++...-+ + ..+....+++++.
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~~V~-l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~- 77 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGYEVT-LYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV- 77 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTSEEE-EE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCCcEE-EEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-
Confidence 5889999 9999999999999999976 6666542100 0 1223345566654
Q ss_pred cCCCCEEEEecChhhH--HHHHHHHHH
Q 020101 97 ETKANASAIYVPPPFA--AAAILEAME 121 (331)
Q Consensus 97 ~~~iDlaii~vp~~~~--~~~v~~~~~ 121 (331)
+.|++|-++|.+.- .++..++-+
T Consensus 78 --~adlViEai~E~l~~K~~~~~~l~~ 102 (180)
T PF02737_consen 78 --DADLVIEAIPEDLELKQELFAELDE 102 (180)
T ss_dssp --TESEEEE-S-SSHHHHHHHHHHHHC
T ss_pred --hhheehhhccccHHHHHHHHHHHHH
Confidence 57999999886553 334444444
No 475
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=78.18 E-value=57 Score=32.25 Aligned_cols=222 Identities=14% Similarity=0.144 Sum_probs=113.5
Q ss_pred CHHHhhhcCCCCEEEEecCh-----------------hhHHHHHHHHHHcCCcEEEEecCC--CChhHHHHHHHHHhccC
Q 020101 90 TVAEAKAETKANASAIYVPP-----------------PFAAAAILEAMEAELDLVVCITEG--IPQHDMVRVKAALNNQS 150 (331)
Q Consensus 90 sl~dl~~~~~iDlaii~vp~-----------------~~~~~~v~~~~~~Gi~~ivi~t~G--~~e~~~~~l~~~a~~~~ 150 (331)
+++.+.+ ..+|.+-++.|. +.+.+.++.+.+.|....+.+... .+.+...++.+.+ .+.
T Consensus 80 di~~a~~-~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~-~~~ 157 (378)
T PRK11858 80 DIDASID-CGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAA-EEA 157 (378)
T ss_pred HHHHHHh-CCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHH-HhC
Confidence 4555444 367888777774 334557778888898764432222 2234455666655 566
Q ss_pred Cc-EEEccCCCCcccCCCcc--cccCCCCCCCCCCEEEEecCh---HHHHHHHHHHHhCCCCce--EEEecCCCCCCCCC
Q 020101 151 KT-RLVGPNCPGVIKPGECK--IGIMPGYIHKPGRIGIVSRSG---TLTYEAVFQTTAVGLGQS--TCVGIGGDPFNGTN 222 (331)
Q Consensus 151 gi-~viGPnc~Gi~~p~~~~--~~~~~~~~~~~G~valisQSG---~~~~~~~~~~~~~g~g~s--~~vs~Gn~~~~~v~ 222 (331)
|. +|.=+++.|...|..+. +...-. .. .-.+++=++.- +++.++.. -+.|...- .+-++|..+ ....
T Consensus 158 Ga~~I~l~DT~G~~~P~~v~~lv~~l~~-~~-~~~l~~H~Hnd~GlA~AN~laA--v~aGa~~vd~tv~GlGera-GNa~ 232 (378)
T PRK11858 158 GADRVRFCDTVGILDPFTMYELVKELVE-AV-DIPIEVHCHNDFGMATANALAG--IEAGAKQVHTTVNGLGERA-GNAA 232 (378)
T ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHH-hc-CCeEEEEecCCcCHHHHHHHHH--HHcCCCEEEEeeccccccc-cCcc
Confidence 75 46778999999997221 111000 01 22466655532 33444432 24555443 345666654 5678
Q ss_pred HHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC-----CCCCEEE-----EEeCCCCCCCC-------C-----
Q 020101 223 FVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG-----TEKPIVA-----FIAGLTAPPGR-------R----- 280 (331)
Q Consensus 223 ~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r-----~~KPVvv-----~k~Grs~~~g~-------~----- 280 (331)
+.+++.+|..-...+. .+-++. +.+..++++.+- ..||||- .++|-... |. .
T Consensus 233 lE~vv~~L~~~~g~~~-~idl~~----l~~~s~~v~~~~~~~~~~~~pivG~~~F~h~sGiH~~-gi~k~~~~Ye~~~P~ 306 (378)
T PRK11858 233 LEEVVMALKYLYGIDL-GIDTER----LYELSRLVSKASGIPVPPNKAIVGENAFAHESGIHVD-GVLKNPLTYEPFLPE 306 (378)
T ss_pred HHHHHHHHHHHhCCCC-CcCHHH----HHHHHHHHHHHhCcCCCCCCccccchhhhhhccccHH-HHhCCcccccccCHH
Confidence 8999888863111111 122333 344445554431 8899863 34444321 00 0
Q ss_pred -CCCCcccc-cCCCCCHHHHHHHHHHcCCeEe-CCHhHHHHHHHHHHH
Q 020101 281 -MGHAGAIV-SGGKGTAQDKIKTLREAGVTVV-ESPAKIGAAMLEVFK 325 (331)
Q Consensus 281 -~sHtga~a-~~~~g~~~~~~a~~~~aGv~~v-~~~~el~~~~~a~~~ 325 (331)
.+..-.+. +...|. ......+++.|+-.- +..++++..++.+.+
T Consensus 307 ~vG~~~~~~~g~~SG~-~~v~~~l~~~g~~~~~~~~~~~~~~vk~~~~ 353 (378)
T PRK11858 307 EVGLERRIVLGKHSGR-HALKNKLKEYGIELSREELCELLEKVKELSE 353 (378)
T ss_pred HcCCcccccccccccH-HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 01111111 111132 345667889998554 335556666665443
No 476
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=78.11 E-value=11 Score=42.43 Aligned_cols=86 Identities=13% Similarity=0.067 Sum_probs=53.2
Q ss_pred CCCeEEEEEcCCC-CCCcH---------HHHHHHHcCCeEEEEeCCCC--CCce--ecC----cccc-cCHHHhhhcCCC
Q 020101 40 DKNTRVICQGITG-KNGTF---------HTEQAIEYGTKMVGGVTPKK--GGTE--HLG----LPVF-NTVAEAKAETKA 100 (331)
Q Consensus 40 ~k~~~VaIvGasg-k~G~~---------~~~~l~~~g~~iv~~VnP~~--~g~~--i~G----~p~y-~sl~dl~~~~~i 100 (331)
++..+|+|+|+.. ++|+. +++.+++.|++++ .||.+. .... ... .|.+ ..+.++.+++++
T Consensus 552 ~~~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI-~v~~npetvs~d~~~~D~ly~ep~~~e~vl~i~~~e~i 630 (1050)
T TIGR01369 552 TDKKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETI-MINYNPETVSTDYDTSDRLYFEPLTFEDVMNIIELEKP 630 (1050)
T ss_pred CCCceEEEecCcccccccccccchHHHHHHHHHHhCCCEEE-EEecCCccccccccccceEEEecCCHHHHHHHHhhcCC
Confidence 3456899999843 46763 3678888999976 555443 1111 111 1111 234445555689
Q ss_pred CEEEEecChhhHHHHHHHHHHcCCcE
Q 020101 101 NASAIYVPPPFAAAAILEAMEAELDL 126 (331)
Q Consensus 101 Dlaii~vp~~~~~~~v~~~~~~Gi~~ 126 (331)
|.++.....+....+.+.+.+.|++.
T Consensus 631 dgVI~~~gg~~~~~la~~le~~Gi~i 656 (1050)
T TIGR01369 631 EGVIVQFGGQTPLNLAKALEEAGVPI 656 (1050)
T ss_pred CEEEEccCcHhHHHHHHHHHHCCCcE
Confidence 99887766666667777777888875
No 477
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=78.08 E-value=8.9 Score=35.47 Aligned_cols=34 Identities=15% Similarity=0.079 Sum_probs=26.8
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCC
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG 78 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~ 78 (331)
+|+|+|+ |-.|..++++|...|+.-+..||+...
T Consensus 1 kVlvvG~-GGlG~eilk~La~~Gvg~i~ivD~D~V 34 (234)
T cd01484 1 KVLLVGA-GGIGCELLKNLALMGFGQIHVIDMDTI 34 (234)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence 4789999 889999999999988863447776653
No 478
>PLN02735 carbamoyl-phosphate synthase
Probab=77.70 E-value=6.5 Score=44.42 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCC-CC---------CcHHHHHHHHcCCeEEEEeCCCC
Q 020101 41 KNTRVICQGITG-KN---------GTFHTEQAIEYGTKMVGGVTPKK 77 (331)
Q Consensus 41 k~~~VaIvGasg-k~---------G~~~~~~l~~~g~~iv~~VnP~~ 77 (331)
+..||.|+|+.. .+ |..+.+.|++.|++++ .||++.
T Consensus 22 ~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi-~vd~np 67 (1102)
T PLN02735 22 DLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVV-LINSNP 67 (1102)
T ss_pred CCCEEEEECCCccccccceeecchHHHHHHHHHHcCCEEE-EEeCCc
Confidence 346799999832 23 4557889999999988 777765
No 479
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=77.69 E-value=15 Score=32.51 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=25.6
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEE
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMV 70 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv 70 (331)
..+|+|.|+||.+|+.+++.+.+.|++++
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~~G~~v~ 33 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAAQGANVV 33 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEE
Confidence 34688999999999999999999999975
No 480
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=77.51 E-value=19 Score=32.60 Aligned_cols=63 Identities=14% Similarity=0.259 Sum_probs=39.9
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC-CCCCCceecCcccc-------cCHHHhhhcCCCCEEEEecC
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGTEHLGLPVF-------NTVAEAKAETKANASAIYVP 108 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn-P~~~g~~i~G~p~y-------~sl~dl~~~~~iDlaii~vp 108 (331)
+|.|.|+||..|+.+.+.|.+.|+++.+.+. |......-.++.+. .++..... ++|.+++..+
T Consensus 2 ~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~~~v~~~~~d~~~~~~l~~a~~--G~~~~~~i~~ 72 (275)
T COG0702 2 KILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALAGGVEVVLGDLRDPKSLVAGAK--GVDGVLLISG 72 (275)
T ss_pred eEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhcCCcEEEEeccCCHhHHHHHhc--cccEEEEEec
Confidence 5789999999999999999999998775432 22211001222211 13444444 7788877777
No 481
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=77.50 E-value=6.9 Score=38.34 Aligned_cols=100 Identities=17% Similarity=0.256 Sum_probs=66.5
Q ss_pred CCCCCCccccc--CCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEE--EeCCCCCCceecCcccccCHHHhhhcCCCCEE
Q 020101 28 TTAPPPAPAVF--VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVG--GVTPKKGGTEHLGLPVFNTVAEAKAETKANAS 103 (331)
Q Consensus 28 ~~~~~~l~~ll--~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~--~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDla 103 (331)
-+-+|+....+ .=....++|+|. |++|+.+.+.++..|..+++ |+.|... .+-.|+.. -+++|+.. ..|.+
T Consensus 130 k~g~wnr~~~~G~el~GKTLgvlG~-GrIGseVA~r~k~~gm~vI~~dpi~~~~~-~~a~gvq~-vsl~Eil~--~ADFi 204 (406)
T KOG0068|consen 130 KEGKWNRVKYLGWELRGKTLGVLGL-GRIGSEVAVRAKAMGMHVIGYDPITPMAL-AEAFGVQL-VSLEEILP--KADFI 204 (406)
T ss_pred ecCceeecceeeeEEeccEEEEeec-ccchHHHHHHHHhcCceEEeecCCCchHH-HHhcccee-eeHHHHHh--hcCEE
Confidence 44567776666 223445678999 99999999999999888663 4666542 23456653 45888876 78999
Q ss_pred EEecChhhH-HH----HHHHHHHcCCcEEEEecCC
Q 020101 104 AIYVPPPFA-AA----AILEAMEAELDLVVCITEG 133 (331)
Q Consensus 104 ii~vp~~~~-~~----~v~~~~~~Gi~~ivi~t~G 133 (331)
-+-+|---. .. -.-...++|++. |+.+-|
T Consensus 205 tlH~PLtP~T~~lin~~tfA~mKkGVri-IN~aRG 238 (406)
T KOG0068|consen 205 TLHVPLTPSTEKLLNDETFAKMKKGVRI-INVARG 238 (406)
T ss_pred EEccCCCcchhhccCHHHHHHhhCCcEE-EEecCC
Confidence 988875322 22 223455788986 666665
No 482
>PLN02686 cinnamoyl-CoA reductase
Probab=77.24 E-value=11 Score=36.72 Aligned_cols=34 Identities=15% Similarity=0.057 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT 74 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn 74 (331)
+..+|+|.|++|-+|+.+++.|.+.|++++..++
T Consensus 52 ~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r 85 (367)
T PLN02686 52 EARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVD 85 (367)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeC
Confidence 4557889999999999999999999999775443
No 483
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=77.23 E-value=4.4 Score=38.04 Aligned_cols=90 Identities=14% Similarity=0.079 Sum_probs=58.5
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCe----------EEEEeCCCCC---C-cee-----------cCcccccCHHHhh
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTK----------MVGGVTPKKG---G-TEH-----------LGLPVFNTVAEAK 95 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~----------iv~~VnP~~~---g-~~i-----------~G~p~y~sl~dl~ 95 (331)
+..+|+++|| |..|-.+.+.+.+.+.+ -++.||.+.- + ++. ...+-+.+|.|+.
T Consensus 24 ~d~riv~~GA-GsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~eav 102 (254)
T cd00762 24 SEHKVLFNGA-GAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANPERESGDLEDAV 102 (254)
T ss_pred hhcEEEEECc-CHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHHH
Confidence 3578899999 77776666665554321 3447776531 0 110 0112335788888
Q ss_pred hcCCCCEEE-Eec-ChhhHHHHHHHHHHcCCcEEEEecC
Q 020101 96 AETKANASA-IYV-PPPFAAAAILEAMEAELDLVVCITE 132 (331)
Q Consensus 96 ~~~~iDlai-i~v-p~~~~~~~v~~~~~~Gi~~ivi~t~ 132 (331)
+..++|+.| ++. |....+++++...++.-+.|| |.-
T Consensus 103 ~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PII-FaL 140 (254)
T cd00762 103 EAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVI-FAL 140 (254)
T ss_pred HhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEE-EEC
Confidence 766789998 555 778889999999988777855 554
No 484
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=77.17 E-value=8.6 Score=40.07 Aligned_cols=97 Identities=13% Similarity=0.086 Sum_probs=65.0
Q ss_pred cccccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCe-EEEEeCCCCCCc------------------eecCcccccCHHHh
Q 020101 34 APAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTK-MVGGVTPKKGGT------------------EHLGLPVFNTVAEA 94 (331)
Q Consensus 34 l~~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~-iv~~VnP~~~g~------------------~i~G~p~y~sl~dl 94 (331)
+...|. ..+|.|.|++|.+|+.+.+.+.+++-+ ++ .++...... .+..++=+..++++
T Consensus 244 i~~~~~--gK~vLVTGagGSiGsel~~qil~~~p~~i~-l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~ 320 (588)
T COG1086 244 IGAMLT--GKTVLVTGGGGSIGSELCRQILKFNPKEII-LFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERA 320 (588)
T ss_pred HHhHcC--CCEEEEeCCCCcHHHHHHHHHHhcCCCEEE-EecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHH
Confidence 444453 456788999999999999998887654 44 444332110 12344555567777
Q ss_pred hhcCCCCEEEEecChhh------------------HHHHHHHHHHcCCcEEEEecCC
Q 020101 95 KAETKANASAIYVPPPF------------------AAAAILEAMEAELDLVVCITEG 133 (331)
Q Consensus 95 ~~~~~iDlaii~vp~~~------------------~~~~v~~~~~~Gi~~ivi~t~G 133 (331)
.+.++||++.=+..-.+ +..+++.|.+.|++.++++++.
T Consensus 321 ~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTD 377 (588)
T COG1086 321 MEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTD 377 (588)
T ss_pred HhcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecC
Confidence 77667999875432221 3467889999999999999984
No 485
>PRK07985 oxidoreductase; Provisional
Probab=77.02 E-value=7.2 Score=36.62 Aligned_cols=84 Identities=17% Similarity=0.115 Sum_probs=50.3
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCC---EEEEecChhhHHHHHHHH
Q 020101 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKAN---ASAIYVPPPFAAAAILEA 119 (331)
Q Consensus 43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iD---laii~vp~~~~~~~v~~~ 119 (331)
.+++|.|+++.+|+.+.+.|.+.|++++ .++.... .+ . -..+.+..++...+ +..+.+..+.....++++
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~~Vi-~~~~~~~-~~--~---~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 122 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGADVA-ISYLPVE-EE--D---AQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEA 122 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEE-EecCCcc-hh--h---HHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHH
Confidence 4678999999999999999999999977 4543221 10 0 11122222211112 233556677777777777
Q ss_pred HHc--CCcEEEEecCCC
Q 020101 120 MEA--ELDLVVCITEGI 134 (331)
Q Consensus 120 ~~~--Gi~~ivi~t~G~ 134 (331)
.+. ++..+++ ..|.
T Consensus 123 ~~~~g~id~lv~-~Ag~ 138 (294)
T PRK07985 123 HKALGGLDIMAL-VAGK 138 (294)
T ss_pred HHHhCCCCEEEE-CCCC
Confidence 653 4777554 4443
No 486
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.92 E-value=15 Score=33.29 Aligned_cols=80 Identities=14% Similarity=0.068 Sum_probs=49.3
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCC-EEEEecChhhHHHHHHHHH
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKAN-ASAIYVPPPFAAAAILEAM 120 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iD-laii~vp~~~~~~~v~~~~ 120 (331)
..+++|.|+++-+|+.+++.|.+.|++++ .+..+. ++ ..+++... ++. +..+.+.++...+.++++.
T Consensus 7 ~k~~lItGas~gIG~~~a~~l~~~G~~v~-~~~~~~--~~--------~~~~l~~~-~~~~~~~Dl~~~~~~~~~~~~~~ 74 (255)
T PRK06463 7 GKVALITGGTRGIGRAIAEAFLREGAKVA-VLYNSA--EN--------EAKELREK-GVFTIKCDVGNRDQVKKSKEVVE 74 (255)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEE-EEeCCc--HH--------HHHHHHhC-CCeEEEecCCCHHHHHHHHHHHH
Confidence 35678999999999999999999999876 332211 10 11222221 222 2335667777777777776
Q ss_pred Hc--CCcEEEEecCCC
Q 020101 121 EA--ELDLVVCITEGI 134 (331)
Q Consensus 121 ~~--Gi~~ivi~t~G~ 134 (331)
+. ++..++ ...|+
T Consensus 75 ~~~~~id~li-~~ag~ 89 (255)
T PRK06463 75 KEFGRVDVLV-NNAGI 89 (255)
T ss_pred HHcCCCCEEE-ECCCc
Confidence 54 477655 44554
No 487
>PRK06172 short chain dehydrogenase; Provisional
Probab=76.91 E-value=6 Score=35.70 Aligned_cols=85 Identities=16% Similarity=0.102 Sum_probs=48.8
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCE-EEEecChhhHHHHHHHHH
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANA-SAIYVPPPFAAAAILEAM 120 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDl-aii~vp~~~~~~~v~~~~ 120 (331)
..+|+|.|+++.+|+.+++.|.+.|++++ .++.+. +... .....+.+... ++.. ..+.+..+...+.++++.
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~~v~-~~~r~~--~~~~--~~~~~~~~~~~--~~~~~~~D~~~~~~i~~~~~~~~ 79 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGAKVV-VADRDA--AGGE--ETVALIREAGG--EALFVACDVTRDAEVKALVEQTI 79 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEE-EEeCCH--HHHH--HHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHH
Confidence 35678999999999999999999999876 555443 2111 11111211111 1222 234555666666666665
Q ss_pred Hc--CCcEEEEecCCC
Q 020101 121 EA--ELDLVVCITEGI 134 (331)
Q Consensus 121 ~~--Gi~~ivi~t~G~ 134 (331)
+. .+..++ ...|+
T Consensus 80 ~~~g~id~li-~~ag~ 94 (253)
T PRK06172 80 AAYGRLDYAF-NNAGI 94 (253)
T ss_pred HHhCCCCEEE-ECCCC
Confidence 43 467655 44443
No 488
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=76.79 E-value=77 Score=31.41 Aligned_cols=78 Identities=13% Similarity=0.194 Sum_probs=52.6
Q ss_pred CCCCCEEEEecChHHHHH----HHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHH
Q 020101 178 HKPGRIGIVSRSGTLTYE----AVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDA 253 (331)
Q Consensus 178 ~~~G~valisQSG~~~~~----~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~ 253 (331)
+..-.|++|.++...+.. +...+++.|+-+.......... ...++...+.-+......++|+++... .++
T Consensus 170 ~~w~~vaii~~~~~~G~~~~~~~~~~~~~~gi~i~~~~~~~~~~-~~~d~~~~l~~l~~~~~a~viil~~~~-----~~~ 243 (452)
T cd06362 170 FNWTYVSTVASEGNYGEKGIEAFEKLAAERGICIAGSEKIPSSA-TEEEFDNIIRKLLSKPNARVVVLFCRE-----DDI 243 (452)
T ss_pred CCCcEEEEEEeCCHHHHHHHHHHHHHHHHCCeeEEEEEEcCCCC-CHHHHHHHHHHHhhcCCCeEEEEEcCh-----HHH
Confidence 345679999998765543 4456666777666555554321 145677777777765568999888763 678
Q ss_pred HHHHHHhC
Q 020101 254 AALIKESG 261 (331)
Q Consensus 254 ~~f~~a~r 261 (331)
..|+++++
T Consensus 244 ~~~~~~a~ 251 (452)
T cd06362 244 RGLLAAAK 251 (452)
T ss_pred HHHHHHHH
Confidence 89998876
No 489
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=76.66 E-value=20 Score=30.13 Aligned_cols=95 Identities=19% Similarity=0.162 Sum_probs=53.9
Q ss_pred CCCcHHHHH-HHHcCCeEEE-EeCCCCCCceecCcccccCHHHhhhcCCCCEEEEec----ChhhHHHHHHHHHHcCCcE
Q 020101 53 KNGTFHTEQ-AIEYGTKMVG-GVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYV----PPPFAAAAILEAMEAELDL 126 (331)
Q Consensus 53 k~G~~~~~~-l~~~g~~iv~-~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~v----p~~~~~~~v~~~~~~Gi~~ 126 (331)
..|+.++.. |+..||+++. ++|-.. ++ =++.+.+ +++|++-++. .-....++++.+.++|++.
T Consensus 13 diGkniv~~~L~~~GfeVidLG~~v~~--e~--------~v~aa~~-~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~ 81 (128)
T cd02072 13 AVGNKILDHAFTEAGFNVVNLGVLSPQ--EE--------FIDAAIE-TDADAILVSSLYGHGEIDCKGLREKCDEAGLKD 81 (128)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCH--HH--------HHHHHHH-cCCCEEEEeccccCCHHHHHHHHHHHHHCCCCC
Confidence 356666654 5557999873 232211 11 1344443 4899987654 3344577778888888744
Q ss_pred EEEecCCC---ChhHHHHHHHHHhccCCcE-EEccCC
Q 020101 127 VVCITEGI---PQHDMVRVKAALNNQSKTR-LVGPNC 159 (331)
Q Consensus 127 ivi~t~G~---~e~~~~~l~~~a~~~~gi~-viGPnc 159 (331)
+.++-.|. ++++..+-.+.. ++.|+. +.+|.+
T Consensus 82 v~vivGG~~~i~~~d~~~~~~~L-~~~Gv~~vf~pgt 117 (128)
T cd02072 82 ILLYVGGNLVVGKQDFEDVEKRF-KEMGFDRVFAPGT 117 (128)
T ss_pred CeEEEECCCCCChhhhHHHHHHH-HHcCCCEEECcCC
Confidence 44445553 555543323333 678874 778764
No 490
>PRK05650 short chain dehydrogenase; Provisional
Probab=76.62 E-value=14 Score=33.74 Aligned_cols=31 Identities=16% Similarity=0.102 Sum_probs=26.2
Q ss_pred EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCC
Q 020101 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTP 75 (331)
Q Consensus 44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP 75 (331)
+|+|.|+++.+|+.+++.|.+.|++++ .++.
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~-~~~r 32 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLA-LADV 32 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEE-EEeC
Confidence 478899999999999999999999876 4443
No 491
>PRK10637 cysG siroheme synthase; Provisional
Probab=76.50 E-value=4.8 Score=40.80 Aligned_cols=79 Identities=8% Similarity=-0.036 Sum_probs=52.0
Q ss_pred CCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceec------Cc----ccccCHHHhhhcCCCCEEEEecC
Q 020101 39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHL------GL----PVFNTVAEAKAETKANASAIYVP 108 (331)
Q Consensus 39 ~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~------G~----p~y~sl~dl~~~~~iDlaii~vp 108 (331)
.-+..+|+|||+ |+.+..=++.|.+.|.++. .|.|.-. +++. .+ .-|. -+++. +.++++.+|.
T Consensus 9 ~l~~~~vlvvGg-G~vA~rk~~~ll~~ga~v~-visp~~~-~~~~~l~~~~~i~~~~~~~~-~~dl~---~~~lv~~at~ 81 (457)
T PRK10637 9 QLRDRDCLLVGG-GDVAERKARLLLDAGARLT-VNALAFI-PQFTAWADAGMLTLVEGPFD-ESLLD---TCWLAIAATD 81 (457)
T ss_pred EcCCCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEcCCCC-HHHHHHHhCCCEEEEeCCCC-hHHhC---CCEEEEECCC
Confidence 556788999999 7777666778888898876 7777652 2221 11 1221 23432 5799999997
Q ss_pred hhh-HHHHHHHHHHcCC
Q 020101 109 PPF-AAAAILEAMEAEL 124 (331)
Q Consensus 109 ~~~-~~~~v~~~~~~Gi 124 (331)
.+. -..+.+.|-++|+
T Consensus 82 d~~~n~~i~~~a~~~~~ 98 (457)
T PRK10637 82 DDAVNQRVSEAAEARRI 98 (457)
T ss_pred CHHHhHHHHHHHHHcCc
Confidence 644 4556677777765
No 492
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=76.39 E-value=5.6 Score=36.10 Aligned_cols=89 Identities=18% Similarity=0.101 Sum_probs=50.1
Q ss_pred ccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCC-EEEEecChhhHHHH
Q 020101 37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKAN-ASAIYVPPPFAAAA 115 (331)
Q Consensus 37 ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iD-laii~vp~~~~~~~ 115 (331)
++.-+..+++|.|+++-+|..+++.|.+.|++++ .++... +... ...+.+.+... +++ +..+.+.++...+.
T Consensus 7 ~~~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~-~~~r~~--~~~~--~~~~~i~~~~~--~~~~~~~Dl~d~~~i~~~ 79 (259)
T PRK08213 7 LFDLSGKTALVTGGSRGLGLQIAEALGEAGARVV-LSARKA--EELE--EAAAHLEALGI--DALWIAADVADEADIERL 79 (259)
T ss_pred hhCcCCCEEEEECCCchHHHHHHHHHHHcCCEEE-EEeCCH--HHHH--HHHHHHHhcCC--eEEEEEccCCCHHHHHHH
Confidence 3433456788999999999999999999999876 444332 1100 01111111111 122 22345556666666
Q ss_pred HHHHHHc--CCcEEEEecCC
Q 020101 116 ILEAMEA--ELDLVVCITEG 133 (331)
Q Consensus 116 v~~~~~~--Gi~~ivi~t~G 133 (331)
++++.+. ++..++. ..|
T Consensus 80 ~~~~~~~~~~id~vi~-~ag 98 (259)
T PRK08213 80 AEETLERFGHVDILVN-NAG 98 (259)
T ss_pred HHHHHHHhCCCCEEEE-CCC
Confidence 6666553 5777554 444
No 493
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=76.35 E-value=8 Score=36.53 Aligned_cols=35 Identities=11% Similarity=-0.003 Sum_probs=26.7
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 77 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~ 77 (331)
..+|+|+|+ |.+|...++.++..|.+.+..++.+.
T Consensus 145 ~~~vlV~G~-G~vG~~a~q~ak~~G~~~v~~~~~~~ 179 (308)
T TIGR01202 145 VLPDLIVGH-GTLGRLLARLTKAAGGSPPAVWETNP 179 (308)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCceEEEeCCCH
Confidence 446888997 88999999888888998554666543
No 494
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=76.34 E-value=69 Score=30.13 Aligned_cols=84 Identities=14% Similarity=0.233 Sum_probs=51.6
Q ss_pred CCCEEEEecChHHHHHH----HHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHH
Q 020101 180 PGRIGIVSRSGTLTYEA----VFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAA 255 (331)
Q Consensus 180 ~G~valisQSG~~~~~~----~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~ 255 (331)
...++++.++...+..+ .+.+++.|+-+......-.. ..++...+..+.+ .+.++|++.... .+...
T Consensus 141 ~~~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~---~~d~~~~v~~l~~-~~~d~i~~~~~~-----~~~~~ 211 (345)
T cd06338 141 PKKVAILYADDPFSQDVAEGAREKAEAAGLEVVYDETYPPG---TADLSPLISKAKA-AGPDAVVVAGHF-----PDAVL 211 (345)
T ss_pred CceEEEEecCCcccHHHHHHHHHHHHHcCCEEEEEeccCCC---ccchHHHHHHHHh-cCCCEEEECCcc-----hhHHH
Confidence 45799999988665444 34555666655443333221 3567777777755 345677666543 46778
Q ss_pred HHHHhC---CCCCEEEEEeC
Q 020101 256 LIKESG---TEKPIVAFIAG 272 (331)
Q Consensus 256 f~~a~r---~~KPVvv~k~G 272 (331)
|+++++ .+.|++..-.+
T Consensus 212 ~~~~~~~~g~~~~~~~~~~~ 231 (345)
T cd06338 212 LVRQMKELGYNPKALYMTVG 231 (345)
T ss_pred HHHHHHHcCCCCCEEEEecC
Confidence 998876 45566655444
No 495
>PLN00198 anthocyanidin reductase; Provisional
Probab=76.20 E-value=15 Score=34.85 Aligned_cols=30 Identities=13% Similarity=0.087 Sum_probs=26.2
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEE
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVG 71 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~ 71 (331)
..+|+|.|++|-+|+.+++.|.+.|+++++
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g~~V~~ 38 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKGYAVNT 38 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCCCEEEE
Confidence 456889999999999999999999999763
No 496
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=75.99 E-value=41 Score=32.95 Aligned_cols=157 Identities=13% Similarity=0.108 Sum_probs=82.5
Q ss_pred cccCHHHhhhcCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcE--EEccCCCCccc
Q 020101 87 VFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR--LVGPNCPGVIK 164 (331)
Q Consensus 87 ~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~--viGPnc~Gi~~ 164 (331)
.+.-+.++.++.....++.++.......+...|...|++..+++....+.+-... . +.+|.. +.|.+.-..+.
T Consensus 35 a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~----~-~~~GA~V~~~~~~~~~a~~ 109 (380)
T TIGR01127 35 ALNKIANLSEDQRQRGVVAASAGNHAQGVAYAAKKFGIKAVIVMPESAPPSKVKA----T-KSYGAEVILHGDDYDEAYA 109 (380)
T ss_pred HHHHHHhcchhccCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCcHHHHHH----H-HHCCCEEEEECCCHHHHHH
Confidence 3444555544323456778888888999999999999999887776665433222 2 455544 44432111111
Q ss_pred CC-Cc----ccccCCCCCCCCCCEEEEecChHHHHHHHHHHHhCCCCceE-EEecCCCCCCCCCHHHHHHHhhc-CCCcc
Q 020101 165 PG-EC----KIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQST-CVGIGGDPFNGTNFVDCVTKFIA-DPQTE 237 (331)
Q Consensus 165 p~-~~----~~~~~~~~~~~~G~valisQSG~~~~~~~~~~~~~g~g~s~-~vs~Gn~~~~~v~~~d~l~~l~~-Dp~T~ 237 (331)
-. .+ ...+.+ .-.+-..+.--|+++.++++... .+.+ ++++|+- -+++=+..||.+ .|++|
T Consensus 110 ~a~~~~~~~~~~~~~----~~~~~~~~~g~~t~~~Ei~~q~~----~~D~vv~~vG~G----g~~aGi~~~~k~~~p~~k 177 (380)
T TIGR01127 110 FATSLAEEEGRVFVH----PFDDEFVMAGQGTIGLEIMEDIP----DVDTVIVPVGGG----GLISGVASAAKQINPNVK 177 (380)
T ss_pred HHHHHHHhcCCEecC----CCCChhhhhhhHHHHHHHHHhCC----CCCEEEEEeChH----HHHHHHHHHHHHhCCCCE
Confidence 00 00 011111 11112223334777777776542 2444 5566653 223334444433 79999
Q ss_pred EEEEEEccCCCcHHHHHHHHHHhCCCCCEE
Q 020101 238 GIILIGEIGGTAEEDAAALIKESGTEKPIV 267 (331)
Q Consensus 238 ~I~ly~E~~g~~~~~~~~f~~a~r~~KPVv 267 (331)
+|++--|.. ..|..+.+.+||+-
T Consensus 178 vigVe~~~~-------~~~~~~~~~g~~~~ 200 (380)
T TIGR01127 178 VIGVEAEGA-------PSMYESLREGKIKA 200 (380)
T ss_pred EEEEEECCC-------hHHHHHHHcCCcee
Confidence 999887751 13444444566653
No 497
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=75.99 E-value=9.3 Score=34.82 Aligned_cols=79 Identities=13% Similarity=0.139 Sum_probs=47.5
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcC--CCC-EEEEecChhhHHHHHHH
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAET--KAN-ASAIYVPPPFAAAAILE 118 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~--~iD-laii~vp~~~~~~~v~~ 118 (331)
..+++|.|+++.+|+.+.+.|.+.|++++ .++.+. +. ++++.+.. ++. +..+....+...+.+++
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~~V~-~~~r~~--~~---------~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~ 72 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFVAEGARVA-VLDKSA--AG---------LQELEAAHGDAVVGVEGDVRSLDDHKEAVAR 72 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEE-EEeCCH--HH---------HHHHHhhcCCceEEEEeccCCHHHHHHHHHH
Confidence 45678899999999999999999999977 555432 11 11221110 122 12244555666666766
Q ss_pred HHHc--CCcEEEEecCC
Q 020101 119 AMEA--ELDLVVCITEG 133 (331)
Q Consensus 119 ~~~~--Gi~~ivi~t~G 133 (331)
+.+. .+..++. ..|
T Consensus 73 ~~~~~g~id~li~-~Ag 88 (262)
T TIGR03325 73 CVAAFGKIDCLIP-NAG 88 (262)
T ss_pred HHHHhCCCCEEEE-CCC
Confidence 6553 4776554 444
No 498
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=75.98 E-value=9.3 Score=42.75 Aligned_cols=115 Identities=17% Similarity=0.170 Sum_probs=68.4
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHh-----------hhcCCCCEEEEecCh
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEA-----------KAETKANASAIYVPP 109 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl-----------~~~~~iDlaii~vp~ 109 (331)
+..+|.|+|+ |-.|..++++|...|..-+..+|+.....+-.+...|-+-+++ ..+.++.+-|-+.+.
T Consensus 23 ~~s~VLIiG~-gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~ 101 (1008)
T TIGR01408 23 AKSNVLISGM-GGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAELNPYVHVSSSSV 101 (1008)
T ss_pred hhCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHHHCCCceEEEecc
Confidence 4567899999 7799999999999998644488887642222232222221111 112244554444333
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCC--cEEEccCCCCccc
Q 020101 110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSK--TRLVGPNCPGVIK 164 (331)
Q Consensus 110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~g--i~viGPnc~Gi~~ 164 (331)
....+ . =.+...|| .+. .+.+...++-+.| ++++ +.++--.|.|++-
T Consensus 102 ~l~~e----~-l~~fdvVV-~t~-~~~~~~~~in~~c-r~~~~~I~fI~~~~~G~~G 150 (1008)
T TIGR01408 102 PFNEE----F-LDKFQCVV-LTE-MSLPLQKEINDFC-HSQCPPIAFISADVRGLFG 150 (1008)
T ss_pred cCCHH----H-HcCCCEEE-ECC-CCHHHHHHHHHHH-HHcCCCeEEEEEeecceEE
Confidence 22222 2 23667644 443 3445555677777 7888 8888888888765
No 499
>PRK05867 short chain dehydrogenase; Provisional
Probab=75.98 E-value=5.7 Score=35.97 Aligned_cols=86 Identities=12% Similarity=0.125 Sum_probs=49.5
Q ss_pred CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCC-EEEEecChhhHHHHHHHH
Q 020101 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKAN-ASAIYVPPPFAAAAILEA 119 (331)
Q Consensus 41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iD-laii~vp~~~~~~~v~~~ 119 (331)
+...++|.|+++.+|+.+.+.|.+.|++++ .++.+. +... .....+.+... ++. +..+.+.++...+.++++
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~-~~~r~~--~~~~--~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~ 80 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGAQVA-IAARHL--DALE--KLADEIGTSGG--KVVPVCCDVSQHQQVTSMLDQV 80 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEcCCH--HHHH--HHHHHHHhcCC--eEEEEEccCCCHHHHHHHHHHH
Confidence 445678899999999999999999999976 444332 1110 11111111111 111 223455666677777766
Q ss_pred HHc--CCcEEEEecCCC
Q 020101 120 MEA--ELDLVVCITEGI 134 (331)
Q Consensus 120 ~~~--Gi~~ivi~t~G~ 134 (331)
.+. ++..++ ...|.
T Consensus 81 ~~~~g~id~lv-~~ag~ 96 (253)
T PRK05867 81 TAELGGIDIAV-CNAGI 96 (253)
T ss_pred HHHhCCCCEEE-ECCCC
Confidence 554 577755 44453
No 500
>PRK07814 short chain dehydrogenase; Provisional
Probab=75.97 E-value=6.3 Score=36.02 Aligned_cols=82 Identities=21% Similarity=0.189 Sum_probs=49.9
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhc-CCCCEE-EEecChhhHHHHHHHH
Q 020101 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAE-TKANAS-AIYVPPPFAAAAILEA 119 (331)
Q Consensus 42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~-~~iDla-ii~vp~~~~~~~v~~~ 119 (331)
..+++|.|+++-+|..+++.|.+.|++++ .++.+. +... .. .+++... ..+.+. .+.+..+....+++++
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~~Vi-~~~r~~--~~~~--~~---~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~ 81 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGADVL-IAARTE--SQLD--EV---AEQIRAAGRRAHVVAADLAHPEATAGLAGQA 81 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEE-EEeCCH--HHHH--HH---HHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 45678999999999999999999999977 454432 1110 01 1122110 122222 3556667777777777
Q ss_pred HHc--CCcEEEEec
Q 020101 120 MEA--ELDLVVCIT 131 (331)
Q Consensus 120 ~~~--Gi~~ivi~t 131 (331)
.+. ++..++..+
T Consensus 82 ~~~~~~id~vi~~A 95 (263)
T PRK07814 82 VEAFGRLDIVVNNV 95 (263)
T ss_pred HHHcCCCCEEEECC
Confidence 664 588866543
Done!