Query 020103
Match_columns 331
No_of_seqs 232 out of 856
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 07:02:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020103.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020103hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00338 BRLZ basic region l 99.4 3.4E-12 7.3E-17 96.5 9.6 62 127-188 2-63 (65)
2 PF00170 bZIP_1: bZIP transcri 99.3 1.7E-11 3.6E-16 92.6 9.4 61 128-188 3-63 (64)
3 KOG4005 Transcription factor X 99.2 5.6E-10 1.2E-14 105.4 13.9 76 127-202 66-141 (292)
4 KOG4343 bZIP transcription fac 99.1 1.9E-10 4.1E-15 117.8 7.2 65 129-193 280-344 (655)
5 PF07716 bZIP_2: Basic region 99.0 1.1E-09 2.5E-14 80.5 8.2 52 127-179 2-53 (54)
6 KOG3584 cAMP response element 98.9 2.1E-09 4.6E-14 103.7 6.6 54 128-181 289-342 (348)
7 KOG0709 CREB/ATF family transc 98.8 9.5E-09 2.1E-13 104.0 6.6 65 128-199 249-313 (472)
8 PF03131 bZIP_Maf: bZIP Maf tr 98.1 9.5E-08 2.1E-12 77.3 -5.2 70 114-188 19-88 (92)
9 KOG0837 Transcriptional activa 97.9 3.1E-05 6.7E-10 74.3 7.3 52 129-180 204-256 (279)
10 KOG4571 Activating transcripti 97.3 0.0011 2.4E-08 64.6 8.9 54 126-179 222-276 (294)
11 KOG4196 bZIP transcription fac 97.0 0.006 1.3E-07 53.6 9.7 50 128-177 51-100 (135)
12 PF06005 DUF904: Protein of un 96.4 0.072 1.6E-06 42.2 10.9 52 151-202 4-55 (72)
13 KOG3863 bZIP transcription fac 96.4 0.0073 1.6E-07 63.9 6.6 66 130-202 490-555 (604)
14 KOG3119 Basic region leucine z 96.3 0.02 4.3E-07 54.9 8.8 53 127-179 191-243 (269)
15 PF11559 ADIP: Afadin- and alp 96.3 0.25 5.5E-06 42.7 14.9 70 152-221 53-122 (151)
16 PF06156 DUF972: Protein of un 95.9 0.044 9.5E-07 46.3 7.9 50 151-200 8-57 (107)
17 PRK13169 DNA replication intia 95.7 0.053 1.2E-06 46.2 7.8 50 151-200 8-57 (110)
18 PF14197 Cep57_CLD_2: Centroso 95.1 0.43 9.3E-06 37.5 10.4 64 155-219 2-66 (69)
19 PRK10884 SH3 domain-containing 95.1 0.3 6.5E-06 45.5 11.2 14 184-197 137-150 (206)
20 PF14662 CCDC155: Coiled-coil 94.7 0.31 6.7E-06 45.4 10.1 69 152-224 9-77 (193)
21 TIGR02449 conserved hypothetic 94.6 0.35 7.5E-06 38.0 8.6 45 153-197 2-46 (65)
22 PF08614 ATG16: Autophagy prot 94.5 0.72 1.6E-05 41.7 11.9 67 129-195 115-181 (194)
23 COG3074 Uncharacterized protei 93.8 1.1 2.4E-05 36.2 10.0 25 153-177 6-30 (79)
24 PRK15422 septal ring assembly 93.6 1.2 2.7E-05 36.2 10.3 51 151-201 4-54 (79)
25 COG1579 Zn-ribbon protein, pos 93.5 4.6 9.9E-05 38.8 15.6 49 153-201 91-139 (239)
26 PF10224 DUF2205: Predicted co 93.5 0.53 1.2E-05 38.2 8.0 48 154-201 19-66 (80)
27 PF14197 Cep57_CLD_2: Centroso 93.3 1 2.2E-05 35.4 9.2 59 163-221 3-61 (69)
28 PF04102 SlyX: SlyX; InterPro 93.3 0.45 9.7E-06 36.9 7.1 49 151-199 4-52 (69)
29 TIGR02894 DNA_bind_RsfA transc 93.3 1.3 2.8E-05 40.3 11.1 52 151-202 87-141 (161)
30 PF14662 CCDC155: Coiled-coil 93.1 2.1 4.6E-05 40.0 12.3 44 154-197 98-141 (193)
31 PF13747 DUF4164: Domain of un 92.9 2.6 5.5E-05 34.5 11.3 70 129-198 10-79 (89)
32 PF05911 DUF869: Plant protein 92.7 1.8 3.8E-05 47.7 12.9 73 153-225 94-208 (769)
33 PRK00295 hypothetical protein; 92.4 1 2.2E-05 35.1 7.9 43 152-194 6-48 (68)
34 TIGR02449 conserved hypothetic 92.3 1.2 2.6E-05 35.0 8.2 47 152-198 8-54 (65)
35 PRK02119 hypothetical protein; 92.1 0.93 2E-05 35.9 7.6 41 151-191 9-49 (73)
36 PF10146 zf-C4H2: Zinc finger- 92.1 8.5 0.00018 36.6 15.3 84 144-227 25-109 (230)
37 PRK02793 phi X174 lysis protei 92.1 0.96 2.1E-05 35.6 7.6 41 151-191 8-48 (72)
38 PF05266 DUF724: Protein of un 92.1 7.3 0.00016 36.0 14.4 67 126-192 85-151 (190)
39 COG4467 Regulator of replicati 92.1 0.57 1.2E-05 40.3 6.7 46 152-197 9-54 (114)
40 PF10186 Atg14: UV radiation r 92.1 8.8 0.00019 35.5 15.2 50 146-195 58-107 (302)
41 PRK00736 hypothetical protein; 92.0 1.1 2.3E-05 35.0 7.6 37 151-187 5-41 (68)
42 PRK10884 SH3 domain-containing 92.0 3.5 7.7E-05 38.4 12.4 39 153-191 127-165 (206)
43 PRK04325 hypothetical protein; 91.8 1.1 2.3E-05 35.5 7.6 35 152-186 10-44 (74)
44 PF04111 APG6: Autophagy prote 91.6 6.8 0.00015 38.5 14.5 82 142-223 55-136 (314)
45 PF10473 CENP-F_leu_zip: Leuci 91.5 9.6 0.00021 33.9 15.1 74 129-202 30-103 (140)
46 PF12325 TMF_TATA_bd: TATA ele 91.5 4.8 0.0001 34.8 11.8 36 156-191 28-63 (120)
47 PRK04406 hypothetical protein; 91.5 1.2 2.6E-05 35.5 7.5 35 151-185 11-45 (75)
48 KOG4005 Transcription factor X 91.4 2.9 6.2E-05 40.7 11.4 80 126-205 69-151 (292)
49 PRK11637 AmiB activator; Provi 91.4 5.6 0.00012 40.0 14.0 75 128-202 168-242 (428)
50 PRK13729 conjugal transfer pil 91.4 0.87 1.9E-05 47.5 8.4 44 152-195 77-120 (475)
51 PF15070 GOLGA2L5: Putative go 91.3 6.4 0.00014 42.4 15.0 70 133-202 104-197 (617)
52 COG2433 Uncharacterized conser 91.1 2.2 4.9E-05 45.9 11.2 42 152-193 423-464 (652)
53 PF11559 ADIP: Afadin- and alp 91.0 9.5 0.00021 32.9 15.3 63 131-193 46-108 (151)
54 PF12711 Kinesin-relat_1: Kine 90.8 4.5 9.8E-05 33.4 10.5 59 162-222 21-85 (86)
55 COG3074 Uncharacterized protei 90.8 2.1 4.7E-05 34.5 8.3 43 152-194 19-61 (79)
56 PF08614 ATG16: Autophagy prot 90.5 3.8 8.3E-05 37.1 10.9 51 151-201 116-166 (194)
57 PF13851 GAS: Growth-arrest sp 90.5 7.5 0.00016 35.9 12.9 58 128-185 70-127 (201)
58 PRK09039 hypothetical protein; 90.4 11 0.00023 37.6 14.7 41 158-198 123-163 (343)
59 PRK00846 hypothetical protein; 90.3 1.9 4.1E-05 34.9 7.7 42 151-192 13-54 (77)
60 PRK11637 AmiB activator; Provi 90.3 10 0.00022 38.2 14.6 13 301-313 328-341 (428)
61 COG4942 Membrane-bound metallo 90.2 7.3 0.00016 40.3 13.7 73 130-202 38-110 (420)
62 KOG4807 F-actin binding protei 90.1 6.6 0.00014 40.9 13.2 91 134-224 374-491 (593)
63 PF07989 Microtub_assoc: Micro 89.9 5.5 0.00012 31.8 10.0 50 153-202 2-59 (75)
64 PF06005 DUF904: Protein of un 89.6 2.5 5.5E-05 33.5 7.8 36 159-194 19-54 (72)
65 PF10473 CENP-F_leu_zip: Leuci 89.5 15 0.00032 32.7 15.0 16 151-166 24-39 (140)
66 KOG0239 Kinesin (KAR3 subfamil 89.2 6.2 0.00014 42.8 12.9 71 153-223 243-316 (670)
67 TIGR03752 conj_TIGR03752 integ 89.1 2.7 5.8E-05 44.0 9.7 47 155-201 77-124 (472)
68 PF10805 DUF2730: Protein of u 89.1 4.3 9.4E-05 33.9 9.3 46 157-202 48-95 (106)
69 KOG0288 WD40 repeat protein Ti 88.7 11 0.00023 39.4 13.5 81 129-209 26-111 (459)
70 PF11932 DUF3450: Protein of u 88.5 22 0.00047 33.4 14.9 44 156-199 54-97 (251)
71 PRK04863 mukB cell division pr 88.4 15 0.00033 43.4 16.0 94 129-222 320-426 (1486)
72 PF02183 HALZ: Homeobox associ 88.3 1.6 3.5E-05 31.8 5.4 36 163-198 3-38 (45)
73 PF07888 CALCOCO1: Calcium bin 88.3 16 0.00035 39.1 14.9 67 130-196 150-216 (546)
74 PF12718 Tropomyosin_1: Tropom 88.1 8.7 0.00019 33.8 11.0 54 149-202 33-89 (143)
75 KOG0995 Centromere-associated 88.0 17 0.00036 39.1 14.7 47 150-196 279-325 (581)
76 PF09726 Macoilin: Transmembra 87.6 11 0.00023 41.3 13.4 40 154-193 541-580 (697)
77 PF07888 CALCOCO1: Calcium bin 87.3 7.3 0.00016 41.6 11.7 61 141-201 147-207 (546)
78 KOG0982 Centrosomal protein Nu 87.0 9.9 0.00021 39.8 12.1 75 152-226 298-393 (502)
79 PRK09039 hypothetical protein; 86.9 17 0.00037 36.1 13.5 40 159-198 138-177 (343)
80 PF10481 CENP-F_N: Cenp-F N-te 86.6 22 0.00047 35.4 13.7 70 152-221 54-123 (307)
81 PF06156 DUF972: Protein of un 86.6 4 8.6E-05 34.6 7.7 41 155-195 5-45 (107)
82 PF02403 Seryl_tRNA_N: Seryl-t 86.4 16 0.00035 29.7 11.5 48 155-202 40-90 (108)
83 KOG0243 Kinesin-like protein [ 86.4 12 0.00026 42.7 13.3 46 150-195 447-492 (1041)
84 PF08317 Spc7: Spc7 kinetochor 86.1 6.5 0.00014 38.4 10.0 17 209-225 278-294 (325)
85 COG1579 Zn-ribbon protein, pos 86.0 28 0.00061 33.5 13.9 20 204-223 168-187 (239)
86 PF05837 CENP-H: Centromere pr 85.9 6.7 0.00015 32.8 8.7 44 159-202 4-47 (106)
87 PF10211 Ax_dynein_light: Axon 85.8 24 0.00053 32.3 13.0 39 153-191 122-160 (189)
88 PF09726 Macoilin: Transmembra 85.5 26 0.00056 38.4 15.0 39 141-179 478-516 (697)
89 PF08317 Spc7: Spc7 kinetochor 85.5 29 0.00063 34.0 14.2 10 214-223 276-285 (325)
90 KOG1962 B-cell receptor-associ 85.3 15 0.00033 35.0 11.6 61 156-223 149-209 (216)
91 PF09304 Cortex-I_coil: Cortex 85.3 14 0.0003 31.8 10.3 25 154-178 40-64 (107)
92 KOG1414 Transcriptional activa 85.0 0.037 8E-07 55.6 -6.1 53 126-178 150-206 (395)
93 PF00038 Filament: Intermediat 84.6 37 0.0008 32.2 15.1 39 162-200 213-251 (312)
94 PF04880 NUDE_C: NUDE protein, 84.6 1.6 3.4E-05 39.9 4.6 52 153-208 2-53 (166)
95 PF15035 Rootletin: Ciliary ro 84.3 23 0.0005 32.5 12.0 19 179-197 74-92 (182)
96 PHA02562 46 endonuclease subun 84.2 34 0.00073 34.9 14.5 38 154-191 361-398 (562)
97 PF07106 TBPIP: Tat binding pr 84.1 6.7 0.00015 34.6 8.3 52 150-201 85-138 (169)
98 PF15058 Speriolin_N: Sperioli 84.0 1.6 3.5E-05 40.9 4.5 43 177-219 10-52 (200)
99 PRK10698 phage shock protein P 83.9 16 0.00034 34.2 11.1 60 149-208 97-156 (222)
100 PF07106 TBPIP: Tat binding pr 83.9 9.4 0.0002 33.7 9.2 28 153-180 81-108 (169)
101 PF10481 CENP-F_N: Cenp-F N-te 83.9 18 0.00039 35.9 11.7 56 162-224 78-133 (307)
102 PF03962 Mnd1: Mnd1 family; I 83.7 23 0.00049 32.5 11.8 21 208-228 136-156 (188)
103 KOG0977 Nuclear envelope prote 83.5 28 0.00062 37.2 13.9 50 151-200 141-190 (546)
104 PF04111 APG6: Autophagy prote 83.0 20 0.00043 35.3 11.9 52 150-201 42-93 (314)
105 PF06428 Sec2p: GDP/GTP exchan 82.9 1.4 3.1E-05 37.0 3.4 76 152-227 9-85 (100)
106 KOG4643 Uncharacterized coiled 82.9 7.3 0.00016 44.4 9.6 77 150-226 263-341 (1195)
107 KOG0250 DNA repair protein RAD 82.6 33 0.00071 39.4 14.5 56 143-198 371-427 (1074)
108 TIGR02977 phageshock_pspA phag 82.4 21 0.00045 33.0 11.2 62 146-207 94-155 (219)
109 COG4026 Uncharacterized protei 82.4 17 0.00036 35.5 10.7 30 151-180 135-164 (290)
110 PF10805 DUF2730: Protein of u 82.2 21 0.00045 29.9 10.1 48 151-198 49-98 (106)
111 PF09730 BicD: Microtubule-ass 82.1 25 0.00055 38.7 13.2 18 181-198 123-140 (717)
112 PRK15422 septal ring assembly 82.0 15 0.00032 30.1 8.7 42 153-194 20-61 (79)
113 PF05266 DUF724: Protein of un 81.9 28 0.0006 32.2 11.7 35 146-180 112-146 (190)
114 COG2433 Uncharacterized conser 81.9 19 0.00041 39.1 11.9 86 136-221 420-509 (652)
115 PRK05431 seryl-tRNA synthetase 81.7 23 0.0005 36.2 12.1 63 158-227 42-107 (425)
116 PF02403 Seryl_tRNA_N: Seryl-t 81.6 17 0.00036 29.6 9.2 68 135-202 7-83 (108)
117 KOG4571 Activating transcripti 81.5 12 0.00026 37.1 9.7 40 174-213 250-290 (294)
118 smart00338 BRLZ basic region l 81.4 11 0.00024 28.3 7.5 22 177-198 31-52 (65)
119 PF08232 Striatin: Striatin fa 81.4 14 0.0003 32.2 9.1 54 170-223 9-62 (134)
120 PF09738 DUF2051: Double stran 81.4 45 0.00097 33.1 13.6 65 120-205 85-149 (302)
121 PF11932 DUF3450: Protein of u 81.3 48 0.001 31.1 15.5 49 144-192 49-97 (251)
122 PF05667 DUF812: Protein of un 81.2 21 0.00046 38.3 12.1 59 149-207 326-384 (594)
123 PF09304 Cortex-I_coil: Cortex 80.9 36 0.00077 29.4 12.4 54 144-197 23-76 (107)
124 PRK13922 rod shape-determining 80.8 27 0.00059 32.9 11.6 43 180-226 70-112 (276)
125 PF04849 HAP1_N: HAP1 N-termin 80.8 18 0.00039 36.1 10.6 39 160-198 229-267 (306)
126 PF12777 MT: Microtubule-bindi 80.6 10 0.00022 37.3 9.0 61 155-215 232-292 (344)
127 PF10211 Ax_dynein_light: Axon 80.6 32 0.00068 31.6 11.5 31 161-191 123-153 (189)
128 PRK13169 DNA replication intia 80.4 10 0.00022 32.5 7.7 40 154-193 4-43 (110)
129 KOG4643 Uncharacterized coiled 80.4 41 0.00088 38.7 14.2 52 148-199 527-588 (1195)
130 TIGR03752 conj_TIGR03752 integ 80.4 15 0.00032 38.7 10.3 26 153-178 68-93 (472)
131 TIGR00219 mreC rod shape-deter 80.3 4 8.7E-05 39.5 5.9 40 184-226 71-110 (283)
132 PF09755 DUF2046: Uncharacteri 80.2 22 0.00047 35.6 11.0 27 152-178 42-68 (310)
133 TIGR03495 phage_LysB phage lys 80.2 30 0.00064 30.7 10.7 73 154-226 29-101 (135)
134 KOG4360 Uncharacterized coiled 80.1 18 0.00039 38.7 10.8 52 151-202 219-270 (596)
135 KOG0288 WD40 repeat protein Ti 80.0 14 0.00031 38.4 10.0 42 154-195 30-71 (459)
136 PF06419 COG6: Conserved oligo 79.9 38 0.00083 36.2 13.5 64 148-211 42-105 (618)
137 KOG3119 Basic region leucine z 79.9 11 0.00024 36.3 8.7 49 150-198 193-241 (269)
138 PF04012 PspA_IM30: PspA/IM30 79.9 27 0.00058 31.8 10.8 56 152-207 99-154 (221)
139 PF15290 Syntaphilin: Golgi-lo 79.8 17 0.00037 36.1 10.0 28 153-180 77-104 (305)
140 KOG1414 Transcriptional activa 79.7 0.3 6.6E-06 49.1 -1.9 45 127-171 282-326 (395)
141 KOG0977 Nuclear envelope prote 79.6 26 0.00057 37.5 12.0 53 172-224 141-193 (546)
142 KOG1853 LIS1-interacting prote 79.6 43 0.00092 33.3 12.5 88 135-222 75-172 (333)
143 PF12325 TMF_TATA_bd: TATA ele 79.4 41 0.00089 29.1 12.0 14 208-221 97-110 (120)
144 PF05103 DivIVA: DivIVA protei 79.3 1.2 2.6E-05 37.0 1.8 48 151-198 25-72 (131)
145 KOG3650 Predicted coiled-coil 79.1 7.4 0.00016 33.5 6.4 42 158-199 63-104 (120)
146 PF08647 BRE1: BRE1 E3 ubiquit 79.1 34 0.00074 28.0 13.4 66 132-197 5-70 (96)
147 PRK13922 rod shape-determining 78.9 15 0.00033 34.6 9.2 40 150-193 68-107 (276)
148 cd07666 BAR_SNX7 The Bin/Amphi 78.7 58 0.0012 31.4 13.1 78 132-219 151-230 (243)
149 PF05377 FlaC_arch: Flagella a 78.7 13 0.00027 28.6 6.9 48 153-214 2-49 (55)
150 KOG1899 LAR transmembrane tyro 78.4 28 0.00061 38.3 11.8 66 134-201 128-196 (861)
151 PF12709 Kinetocho_Slk19: Cent 78.3 10 0.00023 31.4 6.9 28 171-198 48-75 (87)
152 KOG1962 B-cell receptor-associ 78.2 12 0.00025 35.7 8.1 48 149-196 163-210 (216)
153 KOG0971 Microtubule-associated 78.0 29 0.00062 39.6 12.0 63 139-201 398-470 (1243)
154 COG4026 Uncharacterized protei 78.0 27 0.00058 34.1 10.5 53 147-199 138-190 (290)
155 KOG0161 Myosin class II heavy 77.7 22 0.00048 43.1 11.9 83 141-223 1601-1683(1930)
156 PF05700 BCAS2: Breast carcino 77.6 47 0.001 30.9 11.9 72 151-225 136-214 (221)
157 PRK05431 seryl-tRNA synthetase 77.6 64 0.0014 33.0 13.8 53 128-185 10-62 (425)
158 PF00038 Filament: Intermediat 77.6 66 0.0014 30.5 15.9 33 148-180 220-252 (312)
159 TIGR00414 serS seryl-tRNA synt 77.2 35 0.00076 34.8 11.8 85 128-212 10-103 (418)
160 KOG2391 Vacuolar sorting prote 77.2 23 0.00049 36.1 10.2 53 157-216 224-276 (365)
161 PF02183 HALZ: Homeobox associ 77.0 11 0.00024 27.4 6.0 23 170-192 3-25 (45)
162 KOG0980 Actin-binding protein 76.9 58 0.0013 37.0 14.0 64 128-191 387-450 (980)
163 PF15294 Leu_zip: Leucine zipp 76.4 9.2 0.0002 37.6 7.1 45 156-200 130-174 (278)
164 PF12718 Tropomyosin_1: Tropom 76.3 47 0.001 29.2 10.9 50 151-200 14-63 (143)
165 COG2900 SlyX Uncharacterized p 76.2 16 0.00036 29.4 7.3 30 151-180 8-37 (72)
166 PRK00888 ftsB cell division pr 75.5 13 0.00028 31.2 6.9 26 173-198 35-60 (105)
167 PF13094 CENP-Q: CENP-Q, a CEN 75.5 34 0.00074 29.9 9.9 57 154-210 23-79 (160)
168 PF01166 TSC22: TSC-22/dip/bun 75.4 5 0.00011 31.2 4.0 28 166-193 15-42 (59)
169 TIGR00219 mreC rod shape-deter 75.4 27 0.00058 33.8 10.0 35 159-193 67-105 (283)
170 PF05278 PEARLI-4: Arabidopsis 75.3 52 0.0011 32.4 11.9 6 192-197 234-239 (269)
171 KOG0933 Structural maintenance 75.3 62 0.0013 37.4 13.7 50 153-202 789-838 (1174)
172 KOG4403 Cell surface glycoprot 75.2 23 0.0005 37.4 9.9 16 208-223 303-318 (575)
173 KOG0946 ER-Golgi vesicle-tethe 75.0 28 0.0006 39.2 10.9 70 150-226 649-718 (970)
174 PF09325 Vps5: Vps5 C terminal 75.0 64 0.0014 29.0 11.9 55 160-217 165-221 (236)
175 PF00170 bZIP_1: bZIP transcri 74.6 29 0.00062 26.0 8.0 24 175-198 29-52 (64)
176 PF10212 TTKRSYEDQ: Predicted 74.6 36 0.00078 36.3 11.3 15 208-222 499-516 (518)
177 KOG0250 DNA repair protein RAD 74.5 65 0.0014 37.2 13.8 51 151-201 365-416 (1074)
178 COG3883 Uncharacterized protei 74.4 40 0.00086 33.1 10.8 56 146-201 33-88 (265)
179 PF08172 CASP_C: CASP C termin 73.9 13 0.00029 35.6 7.5 39 148-193 90-128 (248)
180 cd07596 BAR_SNX The Bin/Amphip 73.8 61 0.0013 28.3 14.7 79 139-220 119-206 (218)
181 PF04728 LPP: Lipoprotein leuc 73.7 35 0.00076 26.3 8.2 29 153-181 5-33 (56)
182 PF07798 DUF1640: Protein of u 73.3 36 0.00079 30.5 9.7 16 208-223 132-147 (177)
183 PF08581 Tup_N: Tup N-terminal 73.3 48 0.001 26.8 12.2 69 151-223 4-73 (79)
184 PF06785 UPF0242: Uncharacteri 73.1 23 0.00049 36.2 9.0 51 145-195 121-171 (401)
185 KOG1103 Predicted coiled-coil 73.1 9.3 0.0002 39.4 6.4 75 139-214 226-300 (561)
186 PF15035 Rootletin: Ciliary ro 72.8 38 0.00082 31.1 9.8 50 153-202 69-118 (182)
187 COG3879 Uncharacterized protei 72.8 27 0.00059 33.9 9.2 32 209-240 91-122 (247)
188 KOG4674 Uncharacterized conser 72.7 20 0.00044 43.1 9.8 77 145-221 1237-1321(1822)
189 TIGR02209 ftsL_broad cell divi 72.7 24 0.00051 27.4 7.4 39 166-204 25-63 (85)
190 PRK02224 chromosome segregatio 72.5 93 0.002 33.9 14.2 16 159-174 538-553 (880)
191 KOG0161 Myosin class II heavy 72.3 44 0.00096 40.8 12.5 65 137-201 1646-1710(1930)
192 PF13851 GAS: Growth-arrest sp 72.0 84 0.0018 29.1 15.3 56 145-200 80-135 (201)
193 PF07926 TPR_MLP1_2: TPR/MLP1/ 71.9 62 0.0013 27.7 10.4 15 184-198 103-117 (132)
194 PLN02678 seryl-tRNA synthetase 71.9 89 0.0019 32.6 13.3 89 128-227 14-112 (448)
195 KOG0976 Rho/Rac1-interacting s 71.9 44 0.00096 37.9 11.5 45 157-201 91-135 (1265)
196 PF04849 HAP1_N: HAP1 N-termin 71.4 29 0.00063 34.6 9.3 46 151-196 241-286 (306)
197 KOG4360 Uncharacterized coiled 71.3 57 0.0012 35.1 11.8 52 147-198 194-245 (596)
198 KOG4001 Axonemal dynein light 70.9 47 0.001 32.0 10.1 53 139-191 169-225 (259)
199 PF14915 CCDC144C: CCDC144C pr 70.7 1E+02 0.0022 31.0 12.7 62 140-201 182-243 (305)
200 PF06810 Phage_GP20: Phage min 70.7 68 0.0015 28.6 10.7 61 153-213 29-92 (155)
201 PF08606 Prp19: Prp19/Pso4-lik 70.5 32 0.0007 27.6 7.6 54 171-224 7-67 (70)
202 PF05483 SCP-1: Synaptonemal c 70.5 58 0.0013 36.1 11.9 63 159-221 588-650 (786)
203 PF09755 DUF2046: Uncharacteri 70.4 75 0.0016 31.9 11.9 21 176-196 182-202 (310)
204 PF05700 BCAS2: Breast carcino 70.2 26 0.00056 32.6 8.3 29 173-201 176-204 (221)
205 KOG0804 Cytoplasmic Zn-finger 70.2 48 0.001 35.0 10.8 14 214-227 435-448 (493)
206 PRK10803 tol-pal system protei 70.1 31 0.00068 33.0 9.0 44 152-195 55-98 (263)
207 TIGR00606 rad50 rad50. This fa 70.1 1.2E+02 0.0025 35.4 14.9 11 146-156 852-862 (1311)
208 PRK02119 hypothetical protein; 70.1 43 0.00093 26.5 8.3 28 153-180 4-31 (73)
209 PRK04406 hypothetical protein; 70.1 46 0.001 26.5 8.5 30 153-182 6-35 (75)
210 PF10186 Atg14: UV radiation r 69.8 93 0.002 28.7 15.2 38 143-180 62-99 (302)
211 TIGR02894 DNA_bind_RsfA transc 69.5 24 0.00053 32.3 7.7 30 172-201 104-133 (161)
212 PF15619 Lebercilin: Ciliary p 69.4 96 0.0021 28.8 13.0 16 208-223 172-187 (194)
213 PF04977 DivIC: Septum formati 69.3 19 0.00041 27.2 6.0 29 170-198 22-50 (80)
214 KOG2391 Vacuolar sorting prote 69.3 1.3E+02 0.0028 30.9 13.3 18 56-73 130-147 (365)
215 PF15030 DUF4527: Protein of u 69.3 1.2E+02 0.0026 29.9 13.3 41 139-179 46-86 (277)
216 PF15294 Leu_zip: Leucine zipp 69.2 22 0.00049 35.0 7.9 52 175-226 128-179 (278)
217 PF04977 DivIC: Septum formati 69.0 23 0.00049 26.7 6.4 30 148-177 21-50 (80)
218 smart00787 Spc7 Spc7 kinetocho 68.9 1.3E+02 0.0028 29.9 14.1 14 211-224 275-288 (312)
219 COG4467 Regulator of replicati 68.6 26 0.00057 30.4 7.2 39 155-193 5-43 (114)
220 PF06785 UPF0242: Uncharacteri 68.6 1.3E+02 0.0029 30.9 13.2 69 131-203 76-158 (401)
221 PF10234 Cluap1: Clusterin-ass 68.2 60 0.0013 31.8 10.5 6 51-56 43-48 (267)
222 PF12128 DUF3584: Protein of u 68.1 1.4E+02 0.003 34.6 14.9 27 154-180 624-650 (1201)
223 TIGR02231 conserved hypothetic 68.0 87 0.0019 32.4 12.3 21 175-195 134-154 (525)
224 PHA02562 46 endonuclease subun 67.7 1.2E+02 0.0025 31.1 13.0 41 161-201 361-401 (562)
225 PF14817 HAUS5: HAUS augmin-li 67.7 93 0.002 34.0 12.8 28 154-181 82-109 (632)
226 PF05529 Bap31: B-cell recepto 67.7 52 0.0011 29.5 9.5 10 209-218 177-186 (192)
227 PF03980 Nnf1: Nnf1 ; InterPr 67.5 9.9 0.00021 31.3 4.4 31 148-178 77-107 (109)
228 KOG2129 Uncharacterized conser 67.4 15 0.00034 38.4 6.6 66 154-221 46-114 (552)
229 PF06216 RTBV_P46: Rice tungro 66.8 31 0.00067 34.3 8.3 50 151-200 64-113 (389)
230 PF08537 NBP1: Fungal Nap bind 66.4 70 0.0015 32.3 10.8 85 129-213 121-216 (323)
231 PF12329 TMF_DNA_bd: TATA elem 66.4 63 0.0014 25.5 9.2 46 152-197 13-58 (74)
232 PF13874 Nup54: Nucleoporin co 66.3 63 0.0014 28.1 9.4 66 153-225 53-118 (141)
233 PF03962 Mnd1: Mnd1 family; I 66.1 52 0.0011 30.2 9.2 22 143-164 75-96 (188)
234 KOG0999 Microtubule-associated 65.5 1.2E+02 0.0026 33.2 12.8 44 159-202 171-217 (772)
235 PF08172 CASP_C: CASP C termin 65.5 26 0.00056 33.7 7.4 27 152-178 108-134 (248)
236 PRK04863 mukB cell division pr 65.1 1.9E+02 0.0041 34.7 15.4 59 147-205 372-430 (1486)
237 smart00787 Spc7 Spc7 kinetocho 65.1 1.5E+02 0.0033 29.4 14.7 44 154-197 147-190 (312)
238 COG4372 Uncharacterized protei 64.9 1.9E+02 0.0041 30.5 15.1 40 183-222 183-225 (499)
239 PF09325 Vps5: Vps5 C terminal 64.8 1.1E+02 0.0023 27.6 13.5 87 132-221 116-202 (236)
240 PF09763 Sec3_C: Exocyst compl 64.5 1.5E+02 0.0033 31.9 13.7 49 153-201 25-73 (701)
241 COG3883 Uncharacterized protei 64.4 90 0.002 30.7 10.9 48 154-201 48-95 (265)
242 KOG0971 Microtubule-associated 64.2 1.4E+02 0.0031 34.5 13.5 64 132-195 282-355 (1243)
243 KOG4797 Transcriptional regula 64.2 15 0.00033 32.0 5.0 29 165-193 67-95 (123)
244 KOG0996 Structural maintenance 64.1 1.8E+02 0.0039 34.3 14.5 81 140-221 531-611 (1293)
245 PF10174 Cast: RIM-binding pro 63.6 2E+02 0.0044 32.2 14.6 67 153-219 310-376 (775)
246 PF02841 GBP_C: Guanylate-bind 63.5 1.4E+02 0.0031 28.6 15.1 26 150-175 228-253 (297)
247 PF07926 TPR_MLP1_2: TPR/MLP1/ 63.5 95 0.0021 26.5 12.6 66 152-221 47-112 (132)
248 PF05791 Bacillus_HBL: Bacillu 63.3 90 0.0019 28.3 10.1 78 143-223 102-179 (184)
249 PF12128 DUF3584: Protein of u 63.2 1.9E+02 0.0041 33.5 14.8 52 129-180 784-838 (1201)
250 PF04102 SlyX: SlyX; InterPro 63.2 53 0.0011 25.4 7.5 25 156-180 2-26 (69)
251 PF07407 Seadorna_VP6: Seadorn 63.2 38 0.00083 34.6 8.3 25 160-184 34-58 (420)
252 PF01486 K-box: K-box region; 63.1 27 0.00059 28.4 6.2 56 115-172 37-96 (100)
253 PF12709 Kinetocho_Slk19: Cent 63.1 68 0.0015 26.7 8.4 44 148-191 39-82 (87)
254 PF04949 Transcrip_act: Transc 63.0 1.2E+02 0.0027 27.7 14.5 92 130-221 44-147 (159)
255 KOG2077 JNK/SAPK-associated pr 63.0 71 0.0015 35.0 10.6 75 114-204 301-375 (832)
256 PF04871 Uso1_p115_C: Uso1 / p 62.8 1.1E+02 0.0023 26.9 10.5 11 217-227 105-115 (136)
257 COG1792 MreC Cell shape-determ 62.7 55 0.0012 31.8 9.2 59 160-226 51-109 (284)
258 PF07889 DUF1664: Protein of u 62.7 67 0.0015 28.2 8.8 38 184-221 59-96 (126)
259 PF08826 DMPK_coil: DMPK coile 62.7 71 0.0015 24.8 9.0 16 184-199 23-38 (61)
260 PRK10803 tol-pal system protei 62.6 43 0.00092 32.1 8.3 47 153-199 42-88 (263)
261 TIGR01069 mutS2 MutS2 family p 62.5 1.4E+02 0.003 33.1 13.1 11 306-316 727-737 (771)
262 COG4942 Membrane-bound metallo 62.5 1.8E+02 0.0038 30.5 13.1 66 137-202 38-103 (420)
263 PF06632 XRCC4: DNA double-str 62.1 1.6E+02 0.0034 29.8 12.5 54 152-205 138-197 (342)
264 KOG0964 Structural maintenance 62.1 1.8E+02 0.004 33.8 13.9 83 144-227 411-501 (1200)
265 KOG4603 TBP-1 interacting prot 62.0 73 0.0016 30.0 9.3 34 162-195 83-116 (201)
266 PRK14127 cell division protein 62.0 61 0.0013 27.8 8.2 23 153-175 32-54 (109)
267 PF15058 Speriolin_N: Sperioli 62.0 16 0.00035 34.5 5.1 38 153-198 7-44 (200)
268 PF05812 Herpes_BLRF2: Herpesv 61.8 13 0.00027 32.5 4.1 28 149-176 1-28 (118)
269 PF07851 TMPIT: TMPIT-like pro 61.6 1.2E+02 0.0025 30.8 11.4 74 151-224 4-85 (330)
270 PF06810 Phage_GP20: Phage min 61.5 1.1E+02 0.0023 27.4 10.1 14 187-200 52-65 (155)
271 PF07716 bZIP_2: Basic region 61.4 26 0.00056 25.6 5.2 25 175-199 28-52 (54)
272 PRK00409 recombination and DNA 61.3 1.4E+02 0.003 33.1 12.9 40 127-166 513-552 (782)
273 PF09744 Jnk-SapK_ap_N: JNK_SA 61.3 1.3E+02 0.0028 27.3 12.2 30 161-190 85-114 (158)
274 KOG0804 Cytoplasmic Zn-finger 61.0 1.2E+02 0.0026 32.2 11.6 30 150-179 353-382 (493)
275 PF12808 Mto2_bdg: Micro-tubul 60.8 26 0.00056 26.5 5.1 48 148-198 1-48 (52)
276 PF10168 Nup88: Nuclear pore c 60.6 1.8E+02 0.0038 32.2 13.4 26 152-177 580-605 (717)
277 PF13805 Pil1: Eisosome compon 60.6 72 0.0016 31.4 9.5 63 134-201 131-194 (271)
278 PF14817 HAUS5: HAUS augmin-li 60.6 1.7E+02 0.0038 31.9 13.2 56 139-194 74-129 (632)
279 PF05529 Bap31: B-cell recepto 60.4 1.1E+02 0.0024 27.4 10.2 14 183-196 172-185 (192)
280 PF09728 Taxilin: Myosin-like 60.3 86 0.0019 30.9 10.1 66 150-215 243-308 (309)
281 PHA03155 hypothetical protein; 60.3 12 0.00025 32.7 3.6 24 152-175 9-32 (115)
282 PF04999 FtsL: Cell division p 60.2 50 0.0011 26.4 7.2 42 164-205 34-75 (97)
283 PF04859 DUF641: Plant protein 60.2 28 0.00062 30.7 6.1 38 155-192 91-128 (131)
284 PF08232 Striatin: Striatin fa 60.1 87 0.0019 27.3 9.1 48 154-201 14-61 (134)
285 cd07627 BAR_Vps5p The Bin/Amph 59.9 1.4E+02 0.0031 27.4 12.7 38 134-171 98-135 (216)
286 PF01166 TSC22: TSC-22/dip/bun 59.4 17 0.00036 28.4 4.0 23 150-172 20-42 (59)
287 PRK12705 hypothetical protein; 59.1 2.5E+02 0.0054 29.9 14.0 10 262-271 241-250 (508)
288 PF12711 Kinesin-relat_1: Kine 59.1 32 0.0007 28.4 5.9 37 186-222 24-66 (86)
289 PF06008 Laminin_I: Laminin Do 58.9 1.5E+02 0.0032 28.0 11.1 51 152-202 46-96 (264)
290 PF05667 DUF812: Protein of un 58.9 80 0.0017 34.1 10.4 52 150-201 334-385 (594)
291 TIGR00606 rad50 rad50. This fa 58.8 1.8E+02 0.0039 33.9 13.8 44 151-194 888-931 (1311)
292 TIGR02680 conserved hypothetic 58.8 2.3E+02 0.005 33.4 14.7 9 24-32 85-93 (1353)
293 TIGR03185 DNA_S_dndD DNA sulfu 58.6 2.6E+02 0.0056 29.9 14.6 46 130-175 421-466 (650)
294 PF00769 ERM: Ezrin/radixin/mo 58.4 1.7E+02 0.0037 27.8 15.9 67 155-221 51-117 (246)
295 PRK14160 heat shock protein Gr 58.3 1.1E+02 0.0023 29.1 10.0 47 152-198 55-101 (211)
296 PF07558 Shugoshin_N: Shugoshi 58.3 10 0.00022 27.6 2.6 33 163-195 12-44 (46)
297 PRK02793 phi X174 lysis protei 58.2 90 0.002 24.6 8.2 26 154-179 4-29 (72)
298 PF07558 Shugoshin_N: Shugoshi 58.0 12 0.00025 27.3 2.8 42 132-174 3-44 (46)
299 PF04899 MbeD_MobD: MbeD/MobD 58.0 94 0.002 24.7 10.1 50 153-202 9-58 (70)
300 PF01486 K-box: K-box region; 57.9 55 0.0012 26.6 7.1 21 203-223 64-84 (100)
301 TIGR02132 phaR_Bmeg polyhydrox 57.9 1.4E+02 0.0031 28.0 10.5 53 150-202 78-130 (189)
302 PF01920 Prefoldin_2: Prefoldi 57.9 33 0.00073 27.1 5.8 30 152-181 63-92 (106)
303 PRK10636 putative ABC transpor 57.7 1.1E+02 0.0024 32.6 11.2 51 152-202 564-621 (638)
304 COG2919 Septum formation initi 57.6 1.2E+02 0.0026 25.7 11.1 67 129-201 20-86 (117)
305 PF05377 FlaC_arch: Flagella a 57.5 41 0.00089 25.8 5.8 33 152-184 8-40 (55)
306 KOG0946 ER-Golgi vesicle-tethe 57.3 1.3E+02 0.0028 34.2 11.7 52 145-196 665-716 (970)
307 COG1382 GimC Prefoldin, chaper 57.2 52 0.0011 28.8 7.1 36 146-181 65-100 (119)
308 KOG4343 bZIP transcription fac 56.8 51 0.0011 35.7 8.3 65 126-201 274-338 (655)
309 PRK00888 ftsB cell division pr 56.8 47 0.001 27.8 6.7 31 148-178 31-61 (105)
310 KOG1265 Phospholipase C [Lipid 56.7 3.5E+02 0.0077 31.4 14.9 74 128-201 1026-1104(1189)
311 COG4372 Uncharacterized protei 56.7 2.6E+02 0.0057 29.5 13.7 51 142-192 128-178 (499)
312 KOG0447 Dynamin-like GTP bindi 56.6 62 0.0013 35.7 8.9 40 155-198 230-269 (980)
313 PHA03162 hypothetical protein; 56.5 7.6 0.00016 34.6 2.0 28 148-175 10-37 (135)
314 PF06008 Laminin_I: Laminin Do 56.4 1.8E+02 0.0039 27.4 11.2 50 152-201 53-102 (264)
315 PF04340 DUF484: Protein of un 56.1 1E+02 0.0022 28.3 9.4 47 152-202 41-87 (225)
316 KOG2010 Double stranded RNA bi 55.8 56 0.0012 33.4 8.1 44 155-198 144-187 (405)
317 PF11365 DUF3166: Protein of u 55.8 86 0.0019 26.5 8.0 19 208-226 30-48 (96)
318 PF15619 Lebercilin: Ciliary p 55.5 1.7E+02 0.0037 27.2 10.7 10 155-164 100-109 (194)
319 PF14645 Chibby: Chibby family 55.5 40 0.00087 28.9 6.1 24 158-181 78-101 (116)
320 PRK04325 hypothetical protein; 55.3 99 0.0021 24.5 7.9 27 153-179 4-30 (74)
321 PF13935 Ead_Ea22: Ead/Ea22-li 55.1 65 0.0014 28.0 7.5 13 147-159 77-89 (139)
322 PF13166 AAA_13: AAA domain 55.0 2.9E+02 0.0062 29.4 14.0 46 156-201 408-453 (712)
323 KOG4348 Adaptor protein CMS/SE 54.9 68 0.0015 34.1 8.7 58 149-223 567-624 (627)
324 PRK00846 hypothetical protein; 54.7 1.1E+02 0.0023 24.9 8.1 27 154-180 9-35 (77)
325 PF14282 FlxA: FlxA-like prote 54.4 79 0.0017 26.4 7.6 20 153-172 21-40 (106)
326 PF09789 DUF2353: Uncharacteri 54.4 2.4E+02 0.0053 28.4 13.9 23 181-203 191-213 (319)
327 KOG0933 Structural maintenance 54.3 3.4E+02 0.0074 31.8 14.4 49 151-199 815-863 (1174)
328 cd07596 BAR_SNX The Bin/Amphip 54.1 1.5E+02 0.0032 25.8 13.2 66 129-194 95-167 (218)
329 COG5293 Predicted ATPase [Gene 54.1 3.1E+02 0.0068 29.5 13.4 78 132-209 329-416 (591)
330 PRK00295 hypothetical protein; 54.1 1E+02 0.0022 24.0 7.9 25 156-180 3-27 (68)
331 PRK06569 F0F1 ATP synthase sub 53.9 1.7E+02 0.0037 26.5 12.9 45 129-173 40-84 (155)
332 PF05557 MAD: Mitotic checkpoi 53.8 61 0.0013 35.1 8.6 21 179-199 566-586 (722)
333 TIGR03185 DNA_S_dndD DNA sulfu 53.6 3.1E+02 0.0067 29.4 14.0 46 151-196 421-466 (650)
334 PF14988 DUF4515: Domain of un 53.2 1.7E+02 0.0037 27.3 10.4 70 139-208 129-206 (206)
335 PF10174 Cast: RIM-binding pro 53.1 1.8E+02 0.0039 32.6 12.1 37 179-215 364-400 (775)
336 PF09744 Jnk-SapK_ap_N: JNK_SA 53.0 1.8E+02 0.0038 26.4 13.3 43 155-197 93-135 (158)
337 PLN02320 seryl-tRNA synthetase 52.8 1.4E+02 0.0031 31.7 10.9 63 158-227 107-171 (502)
338 KOG3564 GTPase-activating prot 52.5 1.3E+02 0.0028 32.5 10.3 69 139-207 34-106 (604)
339 PLN02678 seryl-tRNA synthetase 52.4 96 0.0021 32.3 9.4 23 159-181 34-56 (448)
340 KOG0709 CREB/ATF family transc 52.3 52 0.0011 34.7 7.4 29 174-202 274-302 (472)
341 KOG0980 Actin-binding protein 52.0 3.8E+02 0.0081 30.9 14.1 36 135-170 450-485 (980)
342 KOG4603 TBP-1 interacting prot 52.0 1.2E+02 0.0027 28.5 9.0 26 154-179 89-114 (201)
343 KOG3335 Predicted coiled-coil 51.6 34 0.00073 31.9 5.4 44 128-177 89-132 (181)
344 PF13815 Dzip-like_N: Iguana/D 51.6 1.5E+02 0.0032 25.0 9.4 25 127-151 27-51 (118)
345 KOG0999 Microtubule-associated 51.5 1.3E+02 0.0028 33.1 10.2 63 157-226 7-76 (772)
346 PF11180 DUF2968: Protein of u 51.4 2.2E+02 0.0047 26.9 13.0 70 156-225 117-186 (192)
347 PF07246 Phlebovirus_NSM: Phle 51.4 1.7E+02 0.0037 28.9 10.3 17 207-223 223-239 (264)
348 PHA03011 hypothetical protein; 51.3 1.4E+02 0.0031 25.9 8.7 49 169-224 68-116 (120)
349 PRK00409 recombination and DNA 51.0 3.2E+02 0.007 30.4 13.6 11 306-316 738-748 (782)
350 PF05483 SCP-1: Synaptonemal c 51.0 3.9E+02 0.0084 30.1 13.8 80 147-226 604-687 (786)
351 PF12329 TMF_DNA_bd: TATA elem 50.9 1.2E+02 0.0027 23.9 10.7 63 153-222 7-69 (74)
352 PF11500 Cut12: Spindle pole b 50.8 1.3E+02 0.0028 27.3 8.9 52 129-180 83-134 (152)
353 PF05622 HOOK: HOOK protein; 50.5 5.2 0.00011 43.0 0.0 61 140-200 314-377 (713)
354 PF13870 DUF4201: Domain of un 50.3 1.8E+02 0.004 25.7 11.4 20 179-198 84-103 (177)
355 KOG2264 Exostosin EXT1L [Signa 50.2 1E+02 0.0022 34.0 9.3 48 151-198 93-140 (907)
356 PLN02320 seryl-tRNA synthetase 50.1 3.5E+02 0.0075 28.9 14.0 33 150-182 92-124 (502)
357 PF09789 DUF2353: Uncharacteri 50.1 98 0.0021 31.1 8.7 21 156-176 91-111 (319)
358 PF11544 Spc42p: Spindle pole 50.0 1.4E+02 0.0031 24.4 8.3 15 207-221 40-54 (76)
359 PF10146 zf-C4H2: Zinc finger- 50.0 2.4E+02 0.0052 27.0 12.0 16 211-226 85-100 (230)
360 KOG4593 Mitotic checkpoint pro 49.7 1.5E+02 0.0033 32.9 10.6 74 149-226 249-325 (716)
361 PF13805 Pil1: Eisosome compon 49.7 1.7E+02 0.0037 28.9 10.1 52 129-180 143-194 (271)
362 PF04340 DUF484: Protein of un 49.6 86 0.0019 28.8 7.8 38 173-210 41-78 (225)
363 COG1792 MreC Cell shape-determ 49.2 56 0.0012 31.8 6.8 44 147-194 62-105 (284)
364 COG1340 Uncharacterized archae 49.2 2.8E+02 0.006 27.8 11.6 82 139-225 19-101 (294)
365 PF12999 PRKCSH-like: Glucosid 49.0 1.2E+02 0.0026 28.2 8.5 62 113-177 111-172 (176)
366 PF09730 BicD: Microtubule-ass 49.0 2.6E+02 0.0056 31.2 12.4 10 211-220 108-117 (717)
367 KOG0249 LAR-interacting protei 48.5 2.3E+02 0.0051 32.0 11.8 37 162-198 220-256 (916)
368 CHL00118 atpG ATP synthase CF0 48.5 1.9E+02 0.004 25.3 15.2 46 129-174 52-97 (156)
369 PRK14143 heat shock protein Gr 48.4 1.3E+02 0.0028 28.9 9.0 15 288-309 196-210 (238)
370 KOG1318 Helix loop helix trans 48.3 1.5E+02 0.0033 30.9 10.0 37 127-163 226-262 (411)
371 KOG0963 Transcription factor/C 48.1 1.3E+02 0.0027 33.1 9.6 15 207-221 344-358 (629)
372 PRK13729 conjugal transfer pil 48.1 87 0.0019 33.2 8.3 17 154-170 72-88 (475)
373 PRK10361 DNA recombination pro 48.0 3.7E+02 0.008 28.6 14.4 15 210-224 143-157 (475)
374 PRK11281 hypothetical protein; 47.8 1.8E+02 0.0038 34.0 11.3 52 129-180 159-214 (1113)
375 smart00340 HALZ homeobox assoc 47.8 37 0.00081 25.0 4.0 25 174-198 7-31 (44)
376 PF00261 Tropomyosin: Tropomyo 47.7 2.4E+02 0.0052 26.3 13.9 7 134-140 81-87 (237)
377 PF15254 CCDC14: Coiled-coil d 47.7 2.2E+02 0.0049 32.2 11.6 12 214-225 536-547 (861)
378 TIGR02209 ftsL_broad cell divi 47.6 76 0.0016 24.5 6.2 31 148-178 28-58 (85)
379 PF10267 Tmemb_cc2: Predicted 47.5 1.5E+02 0.0033 30.6 9.9 37 184-220 274-318 (395)
380 PRK11147 ABC transporter ATPas 47.3 76 0.0016 33.7 8.0 49 153-201 570-624 (635)
381 PF04899 MbeD_MobD: MbeD/MobD 47.3 1.4E+02 0.0031 23.7 7.9 38 163-200 26-63 (70)
382 KOG0995 Centromere-associated 47.3 3.1E+02 0.0067 29.9 12.3 45 157-201 279-323 (581)
383 PF05600 DUF773: Protein of un 47.2 2E+02 0.0044 30.4 10.9 54 149-202 430-483 (507)
384 PF00769 ERM: Ezrin/radixin/mo 47.0 2.6E+02 0.0057 26.6 11.0 37 148-184 30-66 (246)
385 PF10779 XhlA: Haemolysin XhlA 46.6 1.2E+02 0.0027 23.3 7.1 46 155-200 3-48 (71)
386 smart00502 BBC B-Box C-termina 46.5 1.5E+02 0.0032 23.5 13.6 77 147-223 17-95 (127)
387 KOG1103 Predicted coiled-coil 46.4 3.3E+02 0.0071 28.5 11.8 65 129-196 113-177 (561)
388 PF12999 PRKCSH-like: Glucosid 46.2 1.3E+02 0.0027 28.0 8.2 16 183-198 157-172 (176)
389 PRK01156 chromosome segregatio 46.1 4.5E+02 0.0097 29.0 14.4 6 289-294 845-850 (895)
390 PF10205 KLRAQ: Predicted coil 46.1 1.9E+02 0.0041 24.7 10.5 21 177-197 45-65 (102)
391 PF09738 DUF2051: Double stran 45.9 1.8E+02 0.0039 29.0 9.8 10 92-101 68-77 (302)
392 TIGR00634 recN DNA repair prot 45.9 3.5E+02 0.0077 28.4 12.5 15 191-205 214-228 (563)
393 PF06698 DUF1192: Protein of u 45.9 70 0.0015 24.8 5.5 24 153-176 23-46 (59)
394 PRK10963 hypothetical protein; 45.8 81 0.0017 29.4 7.1 46 153-202 39-84 (223)
395 PRK00736 hypothetical protein; 45.8 1.4E+02 0.0031 23.2 7.9 23 156-178 3-25 (68)
396 KOG0963 Transcription factor/C 45.8 4.5E+02 0.0098 29.0 13.4 33 166-198 236-268 (629)
397 COG5185 HEC1 Protein involved 45.7 1.6E+02 0.0034 31.8 9.7 51 148-202 275-325 (622)
398 PF06818 Fez1: Fez1; InterPro 45.7 2.5E+02 0.0054 26.7 10.2 17 210-226 90-106 (202)
399 PF02388 FemAB: FemAB family; 45.5 1.5E+02 0.0032 30.0 9.3 26 150-175 241-266 (406)
400 PF10224 DUF2205: Predicted co 45.3 1.7E+02 0.0036 23.9 8.1 27 193-219 37-63 (80)
401 PF07227 DUF1423: Protein of u 45.1 1.3E+02 0.0029 31.6 9.1 44 142-185 341-384 (446)
402 PF05701 WEMBL: Weak chloropla 45.0 2.9E+02 0.0063 29.1 11.7 68 156-223 286-353 (522)
403 PF14915 CCDC144C: CCDC144C pr 45.0 3.4E+02 0.0073 27.4 11.4 54 144-197 21-81 (305)
404 TIGR00237 xseA exodeoxyribonuc 44.9 3.6E+02 0.0079 27.6 15.9 24 107-130 235-258 (432)
405 PRK00106 hypothetical protein; 44.8 4.3E+02 0.0093 28.4 14.1 7 150-156 71-77 (535)
406 PRK14148 heat shock protein Gr 44.7 2E+02 0.0043 26.9 9.4 42 157-198 39-80 (195)
407 PF13874 Nup54: Nucleoporin co 44.6 1.8E+02 0.004 25.2 8.7 27 173-199 94-120 (141)
408 KOG3433 Protein involved in me 44.6 2.2E+02 0.0048 27.1 9.5 23 152-174 82-104 (203)
409 PF06818 Fez1: Fez1; InterPro 44.6 2.8E+02 0.0062 26.3 10.4 44 153-196 12-55 (202)
410 PF07407 Seadorna_VP6: Seadorn 44.6 62 0.0013 33.2 6.4 22 156-177 37-58 (420)
411 PF08826 DMPK_coil: DMPK coile 44.3 1.5E+02 0.0033 23.0 9.7 33 162-194 22-54 (61)
412 PF04728 LPP: Lipoprotein leuc 43.8 1.5E+02 0.0032 22.9 7.5 26 158-183 3-28 (56)
413 KOG2077 JNK/SAPK-associated pr 43.7 2E+02 0.0042 31.9 10.2 49 175-223 325-373 (832)
414 PF09787 Golgin_A5: Golgin sub 43.6 3.7E+02 0.0079 28.2 12.1 46 133-178 196-241 (511)
415 KOG0979 Structural maintenance 43.4 6E+02 0.013 29.8 15.1 110 110-223 165-292 (1072)
416 PF10506 MCC-bdg_PDZ: PDZ doma 43.4 1.6E+02 0.0036 23.2 8.2 44 155-198 2-45 (67)
417 PRK14872 rod shape-determining 43.2 1.4E+02 0.0031 30.2 8.7 23 179-201 57-79 (337)
418 TIGR02231 conserved hypothetic 43.0 4E+02 0.0087 27.6 12.8 17 181-197 147-163 (525)
419 PRK13923 putative spore coat p 42.8 1E+02 0.0023 28.4 7.1 29 171-199 110-138 (170)
420 PRK13428 F0F1 ATP synthase sub 42.7 4E+02 0.0087 27.5 15.6 46 129-174 31-76 (445)
421 PF08702 Fib_alpha: Fibrinogen 42.5 2.4E+02 0.0053 25.0 10.7 15 210-224 114-128 (146)
422 PF07798 DUF1640: Protein of u 42.4 2.5E+02 0.0055 25.1 11.4 14 210-223 141-154 (177)
423 KOG4436 Predicted GTPase activ 42.0 32 0.0007 38.7 4.3 23 150-172 828-850 (948)
424 PF15070 GOLGA2L5: Putative go 42.0 3.8E+02 0.0083 29.2 12.2 14 153-166 169-182 (617)
425 PF10359 Fmp27_WPPW: RNA pol I 41.9 1.7E+02 0.0036 30.5 9.3 62 152-225 171-232 (475)
426 KOG2483 Upstream transcription 41.9 60 0.0013 31.2 5.6 39 147-199 101-139 (232)
427 PF07889 DUF1664: Protein of u 41.8 2.4E+02 0.0053 24.7 9.9 52 150-201 67-118 (126)
428 PF07111 HCR: Alpha helical co 41.7 4.8E+02 0.01 29.3 12.8 56 129-190 301-356 (739)
429 KOG0249 LAR-interacting protei 41.4 2.1E+02 0.0045 32.4 10.1 54 155-210 220-273 (916)
430 PF05911 DUF869: Plant protein 41.3 5.7E+02 0.012 28.8 14.6 18 54-71 378-395 (769)
431 KOG2991 Splicing regulator [RN 40.9 3.9E+02 0.0085 26.8 11.1 76 151-226 101-196 (330)
432 PF07200 Mod_r: Modifier of ru 40.8 2.3E+02 0.005 24.2 13.2 53 134-186 31-83 (150)
433 PF07058 Myosin_HC-like: Myosi 40.7 1.8E+02 0.004 29.6 8.9 42 160-201 2-43 (351)
434 PF04065 Not3: Not1 N-terminal 40.7 3.4E+02 0.0074 26.1 11.7 100 114-223 100-206 (233)
435 KOG0978 E3 ubiquitin ligase in 40.7 5.6E+02 0.012 28.6 13.7 13 211-223 605-617 (698)
436 PF11365 DUF3166: Protein of u 40.7 1.3E+02 0.0028 25.4 6.8 43 154-196 4-46 (96)
437 PF12777 MT: Microtubule-bindi 40.6 1.6E+02 0.0034 29.1 8.5 46 152-197 236-281 (344)
438 PRK14011 prefoldin subunit alp 40.6 1.6E+02 0.0035 26.2 7.8 6 193-198 127-132 (144)
439 PF12808 Mto2_bdg: Micro-tubul 40.5 82 0.0018 23.9 5.0 24 155-178 26-49 (52)
440 PF04642 DUF601: Protein of un 40.3 1E+02 0.0022 30.6 7.0 51 151-201 217-274 (311)
441 PF05812 Herpes_BLRF2: Herpesv 40.1 38 0.00083 29.6 3.7 26 174-199 5-30 (118)
442 TIGR01843 type_I_hlyD type I s 40.0 3.6E+02 0.0077 26.1 15.2 20 155-174 155-174 (423)
443 PRK03992 proteasome-activating 39.9 94 0.002 31.1 7.0 9 159-167 16-24 (389)
444 PF09727 CortBP2: Cortactin-bi 39.8 3.3E+02 0.0071 25.7 13.4 23 134-158 98-120 (192)
445 PRK10929 putative mechanosensi 39.8 6.1E+02 0.013 29.8 13.9 89 131-219 207-329 (1109)
446 KOG2273 Membrane coat complex 39.7 4.4E+02 0.0095 27.1 12.9 86 136-221 372-463 (503)
447 PF07200 Mod_r: Modifier of ru 39.7 2.4E+02 0.0052 24.1 11.9 9 116-124 4-12 (150)
448 PF15369 KIAA1328: Uncharacter 39.7 4.3E+02 0.0093 27.0 11.7 37 148-184 30-66 (328)
449 PF15188 CCDC-167: Coiled-coil 39.6 1.6E+02 0.0035 24.3 7.1 51 152-202 6-59 (85)
450 KOG2629 Peroxisomal membrane a 39.5 3.8E+02 0.0082 27.0 10.8 67 155-224 126-192 (300)
451 cd07429 Cby_like Chibby, a nuc 39.5 52 0.0011 28.3 4.3 27 172-198 72-98 (108)
452 PF05557 MAD: Mitotic checkpoi 39.4 2.5E+02 0.0055 30.5 10.5 20 204-223 563-582 (722)
453 PRK01156 chromosome segregatio 39.4 5.6E+02 0.012 28.2 14.9 8 28-35 18-25 (895)
454 PF12761 End3: Actin cytoskele 39.4 3.4E+02 0.0073 25.7 11.1 8 28-35 18-25 (195)
455 COG1340 Uncharacterized archae 39.3 4.1E+02 0.0089 26.6 14.1 89 130-224 26-124 (294)
456 KOG0018 Structural maintenance 39.2 4.3E+02 0.0093 31.1 12.4 55 144-198 416-470 (1141)
457 PF03961 DUF342: Protein of un 39.1 1.9E+02 0.0041 29.5 9.1 6 214-219 403-408 (451)
458 TIGR02680 conserved hypothetic 38.9 7.3E+02 0.016 29.4 15.3 40 141-180 872-911 (1353)
459 PF12795 MscS_porin: Mechanose 38.9 3.3E+02 0.0071 25.4 12.8 30 187-216 186-216 (240)
460 PF15397 DUF4618: Domain of un 38.8 3.9E+02 0.0084 26.2 13.6 35 144-178 74-108 (258)
461 TIGR03007 pepcterm_ChnLen poly 38.7 4.4E+02 0.0095 26.8 13.5 68 154-221 313-383 (498)
462 KOG2072 Translation initiation 38.6 5.9E+02 0.013 29.4 13.1 72 129-201 607-692 (988)
463 KOG2991 Splicing regulator [RN 38.6 4.2E+02 0.0092 26.6 11.1 20 154-173 213-232 (330)
464 KOG0612 Rho-associated, coiled 38.6 5.6E+02 0.012 30.6 13.2 8 29-36 300-307 (1317)
465 PF10212 TTKRSYEDQ: Predicted 38.6 2.4E+02 0.0053 30.3 9.9 47 156-202 432-478 (518)
466 KOG4370 Ral-GTPase effector RL 38.6 1.3E+02 0.0028 31.9 7.7 56 169-224 410-465 (514)
467 PRK04778 septation ring format 38.5 2.9E+02 0.0064 29.2 10.6 87 140-226 299-395 (569)
468 TIGR00634 recN DNA repair prot 38.5 4.8E+02 0.01 27.5 12.1 42 127-169 298-340 (563)
469 PF08912 Rho_Binding: Rho Bind 38.5 2.1E+02 0.0045 23.0 8.1 33 156-188 1-33 (69)
470 PRK14474 F0F1 ATP synthase sub 38.4 3.6E+02 0.0078 25.7 15.6 46 129-174 35-80 (250)
471 KOG4001 Axonemal dynein light 38.4 1.7E+02 0.0037 28.3 8.0 14 147-160 160-173 (259)
472 PRK14161 heat shock protein Gr 38.4 3.2E+02 0.0069 25.1 10.1 64 150-214 11-74 (178)
473 PF08703 PLC-beta_C: PLC-beta 38.4 3.4E+02 0.0073 25.4 13.8 90 128-218 4-104 (185)
474 PF05600 DUF773: Protein of un 38.2 1.5E+02 0.0032 31.4 8.3 51 147-197 442-492 (507)
475 PF10883 DUF2681: Protein of u 37.9 2.2E+02 0.0048 23.6 7.6 56 159-214 24-80 (87)
476 cd00632 Prefoldin_beta Prefold 37.7 1.7E+02 0.0037 23.9 7.0 43 149-191 61-103 (105)
477 cd07429 Cby_like Chibby, a nuc 37.6 72 0.0016 27.5 4.9 37 151-187 72-108 (108)
478 PF10168 Nup88: Nuclear pore c 37.4 6.2E+02 0.013 28.1 13.3 83 140-225 543-625 (717)
479 PF05278 PEARLI-4: Arabidopsis 37.3 4.2E+02 0.0092 26.2 12.7 82 132-213 181-262 (269)
480 KOG4674 Uncharacterized conser 37.3 3.1E+02 0.0067 33.8 11.4 73 147-219 132-204 (1822)
481 KOG0639 Transducin-like enhanc 37.2 4.2E+02 0.0091 29.0 11.3 97 143-241 22-130 (705)
482 PHA03155 hypothetical protein; 37.2 43 0.00093 29.2 3.5 22 174-195 10-31 (115)
483 PHA03162 hypothetical protein; 37.1 42 0.00091 30.0 3.5 22 174-195 15-36 (135)
484 PF15290 Syntaphilin: Golgi-lo 37.1 4.1E+02 0.0088 26.8 10.6 69 150-225 74-142 (305)
485 KOG0612 Rho-associated, coiled 37.0 7.2E+02 0.016 29.8 13.8 95 126-223 443-548 (1317)
486 PRK09841 cryptic autophosphory 36.9 5.9E+02 0.013 27.8 13.6 100 128-227 238-366 (726)
487 PTZ00454 26S protease regulato 36.9 1.1E+02 0.0024 31.1 7.0 43 150-192 21-63 (398)
488 PRK14471 F0F1 ATP synthase sub 36.7 2.9E+02 0.0063 24.1 15.2 97 129-225 38-137 (164)
489 PRK15396 murein lipoprotein; P 36.6 2.3E+02 0.005 23.0 7.5 46 153-198 27-72 (78)
490 COG1730 GIM5 Predicted prefold 36.5 1.8E+02 0.0039 26.1 7.4 45 153-197 96-140 (145)
491 PRK13182 racA polar chromosome 36.2 2E+02 0.0043 26.3 7.9 52 150-201 91-147 (175)
492 TIGR03319 YmdA_YtgF conserved 36.2 5.5E+02 0.012 27.2 15.3 94 131-224 46-143 (514)
493 PRK14154 heat shock protein Gr 36.2 2.4E+02 0.0053 26.7 8.6 55 159-214 53-107 (208)
494 KOG3595 Dyneins, heavy chain [ 36.2 3.1E+02 0.0066 32.6 11.1 77 147-223 937-1013(1395)
495 KOG4196 bZIP transcription fac 36.1 3.3E+02 0.007 24.5 12.3 86 150-236 46-131 (135)
496 PF14932 HAUS-augmin3: HAUS au 35.9 3.9E+02 0.0085 25.4 11.8 73 151-223 68-144 (256)
497 TIGR00414 serS seryl-tRNA synt 35.8 5E+02 0.011 26.6 14.8 105 132-236 4-119 (418)
498 COG3879 Uncharacterized protei 35.7 2E+02 0.0043 28.1 8.1 67 135-202 35-105 (247)
499 KOG0976 Rho/Rac1-interacting s 35.7 5.8E+02 0.013 29.6 12.4 115 111-225 276-390 (1265)
500 COG1729 Uncharacterized protei 35.7 90 0.0019 30.6 5.8 46 153-199 58-103 (262)
No 1
>smart00338 BRLZ basic region leucin zipper.
Probab=99.38 E-value=3.4e-12 Score=96.50 Aligned_cols=62 Identities=40% Similarity=0.546 Sum_probs=55.0
Q ss_pred CChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 020103 127 VDPKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTEN 188 (331)
Q Consensus 127 ~D~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN 188 (331)
.|+|+.||+++||+||++||+||+.|+.+||.+|..|+.+|..|..++..|..++..|..++
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999999999999888766655555443
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.30 E-value=1.7e-11 Score=92.60 Aligned_cols=61 Identities=39% Similarity=0.637 Sum_probs=55.8
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 020103 128 DPKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTEN 188 (331)
Q Consensus 128 D~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN 188 (331)
..|+.+|+++||+||+++|.||+.|+++||.+|..|+.+|..|..++..|...+..|..+|
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4689999999999999999999999999999999999999999999999888888887776
No 3
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.16 E-value=5.6e-10 Score=105.39 Aligned_cols=76 Identities=25% Similarity=0.350 Sum_probs=72.2
Q ss_pred CChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020103 127 VDPKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA 202 (331)
Q Consensus 127 ~D~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~ 202 (331)
-++|-.||+|+||.+|+-+|.|||.+++++|.+|..|..||..|..+...|++.+..|.++|.+|..+|+.+.+..
T Consensus 66 ~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l 141 (292)
T KOG4005|consen 66 WEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQEL 141 (292)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999776664
No 4
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.08 E-value=1.9e-10 Score=117.78 Aligned_cols=65 Identities=34% Similarity=0.555 Sum_probs=61.8
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020103 129 PKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKL 193 (331)
Q Consensus 129 ~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~ 193 (331)
-||..|||+||+||..||+|||+|+.-||.+++.|..||..|+++...|+++...|.+||.+||.
T Consensus 280 ~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kv 344 (655)
T KOG4343|consen 280 LKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKV 344 (655)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccccc
Confidence 46777999999999999999999999999999999999999999999999999999999999964
No 5
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.04 E-value=1.1e-09 Score=80.54 Aligned_cols=52 Identities=37% Similarity=0.543 Sum_probs=47.6
Q ss_pred CChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 127 VDPKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQR 179 (331)
Q Consensus 127 ~D~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr 179 (331)
.|+++.||. +||+||++||+||+.|+.+||.+|..|+.+|..|..++..|+.
T Consensus 2 ~~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 2 DEEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 357788888 9999999999999999999999999999999999998887764
No 6
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=98.90 E-value=2.1e-09 Score=103.75 Aligned_cols=54 Identities=26% Similarity=0.449 Sum_probs=49.8
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020103 128 DPKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDT 181 (331)
Q Consensus 128 D~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~ 181 (331)
-.||.-|+++|||+||..|+|||+|+++||.+|..|+.+|+.|-++|..|+.-|
T Consensus 289 trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLY 342 (348)
T KOG3584|consen 289 TRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELY 342 (348)
T ss_pred hhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHh
Confidence 368889999999999999999999999999999999999999999998877644
No 7
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=98.78 E-value=9.5e-09 Score=104.00 Aligned_cols=65 Identities=28% Similarity=0.442 Sum_probs=55.7
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020103 128 DPKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAME 199 (331)
Q Consensus 128 D~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLE 199 (331)
..||+||+|+|.+||+.||+|||.||+.||.+|....+||..|..++..| +.+|..|-++|..++
T Consensus 249 iLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~L-------e~~N~sLl~qL~klQ 313 (472)
T KOG0709|consen 249 ILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEEL-------ELSNRSLLAQLKKLQ 313 (472)
T ss_pred HHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHH-------hhccHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999998887765 455666666655553
No 8
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.07 E-value=9.5e-08 Score=77.31 Aligned_cols=70 Identities=27% Similarity=0.460 Sum_probs=54.3
Q ss_pred hcCChhHhhhhccCChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 020103 114 KAMDPDKLAELWTVDPKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTEN 188 (331)
Q Consensus 114 k~~~~~~LaEla~~D~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN 188 (331)
..++++.+.+ .|.+||.++||.+|+.+|.||+.++.+||.++..|+.+...|..++..+..+...+...+
T Consensus 19 ~~lt~~q~~~-----lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk~~~ 88 (92)
T PF03131_consen 19 RGLTEEQIAE-----LKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELKRKL 88 (92)
T ss_dssp TTS-HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCH
T ss_pred HcCCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555544 589999999999999999999999999999999988888877777776666554444333
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=97.89 E-value=3.1e-05 Score=74.30 Aligned_cols=52 Identities=33% Similarity=0.476 Sum_probs=44.4
Q ss_pred hHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 129 PKRAKR-ILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRD 180 (331)
Q Consensus 129 ~KR~KR-iLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~ 180 (331)
..|..| .++||++|.+||.||.++|.+||.+|..|..+|..|...+..|.+.
T Consensus 204 ~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~ 256 (279)
T KOG0837|consen 204 KIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQ 256 (279)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHH
Confidence 455555 6899999999999999999999999999999999888877765543
No 10
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=97.31 E-value=0.0011 Score=64.60 Aligned_cols=54 Identities=20% Similarity=0.286 Sum_probs=40.7
Q ss_pred cCChHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 126 TVDPKRAKRIL-ANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQR 179 (331)
Q Consensus 126 ~~D~KR~KRiL-aNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr 179 (331)
..++|+.||+- .|..+|.|.|+||+.-.++|+.+++.|+.+|..|+.++..|.+
T Consensus 222 ~~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~ler 276 (294)
T KOG4571|consen 222 KTPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELER 276 (294)
T ss_pred CCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777754 4455599999999999999999988888777777766665433
No 11
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=97.02 E-value=0.006 Score=53.61 Aligned_cols=50 Identities=24% Similarity=0.329 Sum_probs=40.7
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 128 DPKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLF 177 (331)
Q Consensus 128 D~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~L 177 (331)
-.|..||-|+||=.|+-.|-|+.+.-.+||.+...|..+..+|..++..+
T Consensus 51 rlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~ 100 (135)
T KOG4196|consen 51 RLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRL 100 (135)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999988877777666655544443
No 12
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.40 E-value=0.072 Score=42.20 Aligned_cols=52 Identities=23% Similarity=0.329 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA 202 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~ 202 (331)
+-++.||.+|+.+-..+..|..++..|+.++..|..+|..|+...+.+.+..
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~ 55 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQER 55 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999998888888888888877776553
No 13
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=96.35 E-value=0.0073 Score=63.88 Aligned_cols=66 Identities=26% Similarity=0.329 Sum_probs=53.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020103 130 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA 202 (331)
Q Consensus 130 KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~ 202 (331)
+=+||.=+||.||++.|+||..-|..||..|..|+.+..+|..+-. .+..+-.++|++|..|-+..
T Consensus 490 rDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~-------~~d~~L~~~kqqls~L~~~V 555 (604)
T KOG3863|consen 490 RDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERD-------ELDSTLGVMKQQLSELYQEV 555 (604)
T ss_pred hccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 4466778999999999999999999999999999999888765433 45566777888888876653
No 14
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=96.33 E-value=0.02 Score=54.90 Aligned_cols=53 Identities=21% Similarity=0.410 Sum_probs=42.2
Q ss_pred CChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 127 VDPKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQR 179 (331)
Q Consensus 127 ~D~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr 179 (331)
.|++=.-|.-+|=++|+|||.+.++-..+...+|..|+.||..|+.+|..|++
T Consensus 191 ~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~ 243 (269)
T KOG3119|consen 191 KDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKK 243 (269)
T ss_pred CCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445568999999999999999999999999988888888777766544
No 15
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=96.32 E-value=0.25 Score=42.67 Aligned_cols=70 Identities=17% Similarity=0.258 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKV 221 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~ 221 (331)
+-+.|+.++..+..++..|...+..|+.++..+..+...+..+...++.+.+-....+..+++|+++|+.
T Consensus 53 ~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~ 122 (151)
T PF11559_consen 53 QREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKN 122 (151)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333333332222333333444444443
No 16
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=95.88 E-value=0.044 Score=46.34 Aligned_cols=50 Identities=30% Similarity=0.434 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQ 200 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEq 200 (331)
..+.+||.++..|..+...|+.++..|-.++..|..||..|+.+|..+++
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45788899999999999999999998888889999999999888887765
No 17
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=95.73 E-value=0.053 Score=46.22 Aligned_cols=50 Identities=30% Similarity=0.432 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQ 200 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEq 200 (331)
..+..||.++..|..+...|+.++..+-.+++.|..||..|+.+|..+++
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35778999999999999999999999999999999999999888887633
No 18
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=95.11 E-value=0.43 Score=37.51 Aligned_cols=64 Identities=27% Similarity=0.409 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 020103 155 ELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA-QLRDALNEALKKEVERL 219 (331)
Q Consensus 155 eLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~-qLrdalne~Lk~EVqrL 219 (331)
.||..+..|+..+..+..++...+..+..|..|+...-.+|+..-... .|+ ..+++|++|.+.+
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk-~E~e~L~~el~~~ 66 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLK-EENEALRKELEEL 66 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 477788888888888888887777777777777777766665543332 222 4455555554433
No 19
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.10 E-value=0.3 Score=45.47 Aligned_cols=14 Identities=43% Similarity=0.489 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 020103 184 LSTENTELKLRLQA 197 (331)
Q Consensus 184 L~~EN~eLK~RLqa 197 (331)
|..||.+|+.+++.
T Consensus 137 L~~~n~~L~~~l~~ 150 (206)
T PRK10884 137 LKEENQKLKNQLIV 150 (206)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 20
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.70 E-value=0.31 Score=45.45 Aligned_cols=69 Identities=26% Similarity=0.378 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATG 224 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~atg 224 (331)
.|++|+.--+.|..||.+|...+..+..-+..|..|+..|+.++..+.+-.+.. .+|.+|+..||..+.
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~a----K~l~eEledLk~~~~ 77 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKA----KALEEELEDLKTLAK 77 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 467777777777778888777777777777777777777777777764443433 344555555555443
No 21
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=94.60 E-value=0.35 Score=37.97 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQA 197 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqa 197 (331)
+..||.||..|=.....|..++..|..+...+..|+..|+.+.+.
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~ 46 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQ 46 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666655555555555555555555566666666554443
No 22
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.51 E-value=0.72 Score=41.75 Aligned_cols=67 Identities=22% Similarity=0.259 Sum_probs=45.0
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020103 129 PKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 195 (331)
Q Consensus 129 ~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RL 195 (331)
.++++.+.+.+..-..-.......|.+++.-++.|+.|...|..++..++.++..|..||.+|-.|.
T Consensus 115 ~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555566667777777777777777777777777777777777777776664
No 23
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.78 E-value=1.1 Score=36.18 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLF 177 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~L 177 (331)
++.||.||++.-.-++-|.-++..|
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieEL 30 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEEL 30 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555554443333333333333
No 24
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=93.64 E-value=1.2 Score=36.23 Aligned_cols=51 Identities=22% Similarity=0.287 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
.-++.||.||++.-..+.-|.-++..|+.++..|..|+..++..=..|+++
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~e 54 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERE 54 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 346788999888888777777777777777777777766655444444433
No 25
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.51 E-value=4.6 Score=38.83 Aligned_cols=49 Identities=22% Similarity=0.376 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
+..|+.+++.++....+|..++..+......|..+-..|+.++..++..
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~ 139 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKN 139 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555555555554444
No 26
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=93.46 E-value=0.53 Score=38.21 Aligned_cols=48 Identities=21% Similarity=0.296 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 154 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 154 eeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
++|..++..||.....|..++...+.++..|..||..|..+|..|-..
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567788999999999999999999999999999999999999887443
No 27
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=93.33 E-value=1 Score=35.41 Aligned_cols=59 Identities=29% Similarity=0.298 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 163 LQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKV 221 (331)
Q Consensus 163 Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~ 221 (331)
|+.++.+|..++..+.+++.....+|..|...=.....+....-..+.-|+.|++.|+.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~ 61 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRK 61 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555554433333333333332344445555555544
No 28
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=93.32 E-value=0.45 Score=36.95 Aligned_cols=49 Identities=29% Similarity=0.293 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAME 199 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLE 199 (331)
.+|.+||.++..++..+..|...+..-+++...|..+.+.|..+|..++
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999998888888888877777777776664
No 29
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=93.32 E-value=1.3 Score=40.32 Aligned_cols=52 Identities=27% Similarity=0.403 Sum_probs=43.0
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020103 151 RYISELER---KVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA 202 (331)
Q Consensus 151 qyleeLE~---kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~ 202 (331)
.++..|.. ..+.++.||..|..++..|+.++..|..||..|+.++..++..-
T Consensus 87 ~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY 141 (161)
T TIGR02894 87 SFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDY 141 (161)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555554 47788889999999999999999999999999999998887763
No 30
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=93.09 E-value=2.1 Score=40.01 Aligned_cols=44 Identities=27% Similarity=0.363 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020103 154 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQA 197 (331)
Q Consensus 154 eeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqa 197 (331)
.-|..++..|+.+|.+|..+...++.++..|..++..|+.+|-.
T Consensus 98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~ 141 (193)
T PF14662_consen 98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCE 141 (193)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 56889999999999999999999999999999999999888833
No 31
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=92.93 E-value=2.6 Score=34.54 Aligned_cols=70 Identities=21% Similarity=0.313 Sum_probs=62.8
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 129 PKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 129 ~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
.+|+.+.+.+=+++-..|--+.+-..+||.+++.|....+.|..++......+..|..-|.+++.+|...
T Consensus 10 l~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 10 LTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888888999999999999999999999999999999999999999998765
No 32
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=92.65 E-value=1.8 Score=47.68 Aligned_cols=73 Identities=21% Similarity=0.368 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 020103 153 ISELERKVQTLQTEATTLSA---------------------QLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDA---- 207 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~---------------------qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrda---- 207 (331)
|.++..++..+..||..|.. ++..|+.+...+..||..||-.+..+..+..||.-
T Consensus 94 l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~ 173 (769)
T PF05911_consen 94 LAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREY 173 (769)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555666666665554 33455566666666777776666666555544432
Q ss_pred -----------------HHHHHHHHHHHHHHHhcc
Q 020103 208 -----------------LNEALKKEVERLKVATGE 225 (331)
Q Consensus 208 -----------------lne~Lk~EVqrLk~atge 225 (331)
.+-.|.+|++|||..+--
T Consensus 174 ~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk 208 (769)
T PF05911_consen 174 SRRAAEAASKQHLESVKKIAKLEAECQRLRALVRK 208 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355588999999988754
No 33
>PRK00295 hypothetical protein; Provisional
Probab=92.36 E-value=1 Score=35.13 Aligned_cols=43 Identities=23% Similarity=0.190 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLR 194 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~R 194 (331)
.|.+||.++...+.-+..|...|..-+++...|..+-+.|..|
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~r 48 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKR 48 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999998888888887766655555444444333
No 34
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=92.28 E-value=1.2 Score=34.99 Aligned_cols=47 Identities=21% Similarity=0.350 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
.|+.|=..++.|+.||..|..++..++.+...|...|..-+.||++|
T Consensus 8 kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 8 QVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666666666666666666666666665
No 35
>PRK02119 hypothetical protein; Provisional
Probab=92.13 E-value=0.93 Score=35.86 Aligned_cols=41 Identities=20% Similarity=0.116 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTEL 191 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eL 191 (331)
..|.+||.++...+.-+..|...|+.-+++...|..+-+.|
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888777777777777766555554444433333
No 36
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=92.11 E-value=8.5 Score=36.60 Aligned_cols=84 Identities=17% Similarity=0.190 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 020103 144 RSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVA- 222 (331)
Q Consensus 144 RSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~a- 222 (331)
.+=+....+|.+++.+...|..|......+|.....+...|+..-..++..-................|+.+|.++|..
T Consensus 25 ~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~ 104 (230)
T PF10146_consen 25 ESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEY 104 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556899999999999999999999999999999999988888887776666666544445777888999999998
Q ss_pred hccCC
Q 020103 223 TGEMM 227 (331)
Q Consensus 223 tge~~ 227 (331)
+|...
T Consensus 105 lgl~~ 109 (230)
T PF10146_consen 105 LGLEP 109 (230)
T ss_pred cCCCC
Confidence 77654
No 37
>PRK02793 phi X174 lysis protein; Provisional
Probab=92.09 E-value=0.96 Score=35.64 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTEL 191 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eL 191 (331)
++|.+||.++...+.-+..|...|+.-+++...|..+-+.|
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888777776665554444433333
No 38
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=92.09 E-value=7.3 Score=35.97 Aligned_cols=67 Identities=18% Similarity=0.233 Sum_probs=49.9
Q ss_pred cCChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 020103 126 TVDPKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELK 192 (331)
Q Consensus 126 ~~D~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK 192 (331)
--|-+-.+..|....+-+..+.+++.+...||.++..-..++..+..++..|++....|..+...++
T Consensus 85 GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~ 151 (190)
T PF05266_consen 85 GFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLK 151 (190)
T ss_pred CCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477888888888999999999999999999999988766666666666666665554444444443
No 39
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=92.09 E-value=0.57 Score=40.35 Aligned_cols=46 Identities=28% Similarity=0.372 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQA 197 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqa 197 (331)
.+.+||.++.+|-++...|+.++..+-.++..|..||..|+.||..
T Consensus 9 ~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 9 QVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 4678888888888888888888888888888888888888888876
No 40
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=92.08 E-value=8.8 Score=35.49 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020103 146 KERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 195 (331)
Q Consensus 146 ReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RL 195 (331)
....+..+..++.++..|+.++..+..++...++....+...+...+..+
T Consensus 58 ~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l 107 (302)
T PF10186_consen 58 IQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRL 107 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555555555555555554444444444444333
No 41
>PRK00736 hypothetical protein; Provisional
Probab=91.97 E-value=1.1 Score=35.00 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTE 187 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~E 187 (331)
.+|.+||.++...+.-+..|...|..-+++...|..+
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~q 41 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKK 41 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999988888888877666655444433
No 42
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.95 E-value=3.5 Score=38.45 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTEL 191 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eL 191 (331)
+.+++..+..|+.+|..|..++..++.+...|.++|..+
T Consensus 127 ~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 127 VAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555554444444444444443
No 43
>PRK04325 hypothetical protein; Provisional
Probab=91.80 E-value=1.1 Score=35.54 Aligned_cols=35 Identities=23% Similarity=0.168 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLST 186 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~ 186 (331)
.|.+||.++...+.-+..|...|+.-+++...|..
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ 44 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVARQQQTLDLLQA 44 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48889999988888888888877766655544443
No 44
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.57 E-value=6.8 Score=38.51 Aligned_cols=82 Identities=20% Similarity=0.304 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 142 AARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKV 221 (331)
Q Consensus 142 ArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~ 221 (331)
...-..+..+.+.+||.+...|..|...|..+...+.++-...-.+.+.+..++..+..+...-.+..+.+..++.+|+.
T Consensus 55 le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 55 LEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556666777777777777777777777777766666666677777666666666655555566677788888877
Q ss_pred Hh
Q 020103 222 AT 223 (331)
Q Consensus 222 at 223 (331)
..
T Consensus 135 tN 136 (314)
T PF04111_consen 135 TN 136 (314)
T ss_dssp --
T ss_pred cC
Confidence 44
No 45
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=91.52 E-value=9.6 Score=33.88 Aligned_cols=74 Identities=16% Similarity=0.250 Sum_probs=56.4
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020103 129 PKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA 202 (331)
Q Consensus 129 ~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~ 202 (331)
.+-+-....|++.|-+--+-+++.+..|+.++..+..+...|...+..+......|..+-...+.++..|+...
T Consensus 30 EreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~ 103 (140)
T PF10473_consen 30 ERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLN 103 (140)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445567788888888889999999999999998888888888888777777777666666666666665543
No 46
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.51 E-value=4.8 Score=34.82 Aligned_cols=36 Identities=33% Similarity=0.441 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020103 156 LERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTEL 191 (331)
Q Consensus 156 LE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eL 191 (331)
||.++..|+.++..|..+-..+..+...|+.+|.++
T Consensus 28 ~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 28 LEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555444444444444555555333
No 47
>PRK04406 hypothetical protein; Provisional
Probab=91.46 E-value=1.2 Score=35.53 Aligned_cols=35 Identities=20% Similarity=0.184 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLS 185 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~ 185 (331)
.+|.+||.++...+.-+..|...+..-+++...|.
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~ 45 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQ 45 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777777666665555444333
No 48
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=91.42 E-value=2.9 Score=40.71 Aligned_cols=80 Identities=23% Similarity=0.322 Sum_probs=63.7
Q ss_pred cCChHHHHHHHHhHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020103 126 TVDPKRAKRILANRQSAA--RSKERKARY-ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA 202 (331)
Q Consensus 126 ~~D~KR~KRiLaNRESAr--RSReRKkqy-leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~ 202 (331)
..+.||+|-.++---+-- +.|+-|.+| |.+|+.+-+.|+.||..|.++...|-.++..|..+-..|++.|..+.+++
T Consensus 69 K~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~ 148 (292)
T KOG4005|consen 69 KVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQ 148 (292)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHH
Confidence 356788886555433322 334445554 68999999999999999999999999999999999999999999998887
Q ss_pred HHH
Q 020103 203 QLR 205 (331)
Q Consensus 203 qLr 205 (331)
+..
T Consensus 149 ~~~ 151 (292)
T KOG4005|consen 149 QHN 151 (292)
T ss_pred HHh
Confidence 755
No 49
>PRK11637 AmiB activator; Provisional
Probab=91.42 E-value=5.6 Score=40.00 Aligned_cols=75 Identities=12% Similarity=0.098 Sum_probs=33.1
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020103 128 DPKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA 202 (331)
Q Consensus 128 D~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~ 202 (331)
|-+-+..+...|......+..-...+.+|+.....++.+...|..+....+.....|..+..++...|..++.+.
T Consensus 168 d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~ 242 (428)
T PRK11637 168 RQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANE 242 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333434433333333334444444444444444444444444444444444444444444444444443
No 50
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=91.39 E-value=0.87 Score=47.53 Aligned_cols=44 Identities=18% Similarity=0.257 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 195 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RL 195 (331)
.+++||.++..|+.|...|.++...++++...|..||..|+.++
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999998888999999998888888888887776
No 51
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=91.26 E-value=6.4 Score=42.38 Aligned_cols=70 Identities=26% Similarity=0.361 Sum_probs=46.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHhHHHHHHH
Q 020103 133 KRILANRQSAARSKERKARYISELERKVQTLQTE------------------------ATTLSAQLTLFQRDTTDLSTEN 188 (331)
Q Consensus 133 KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~E------------------------Ns~L~~qlt~Lqr~~~~L~~EN 188 (331)
.-.+.|.+.--+--..+...|.+||.++..++.+ |..|+.+++.|+..+..|.++|
T Consensus 104 qaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~ 183 (617)
T PF15070_consen 104 QAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNEN 183 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344455544444446777788888777666554 5667788888888888888888
Q ss_pred HHHHHHHHHHHHHH
Q 020103 189 TELKLRLQAMEQQA 202 (331)
Q Consensus 189 ~eLK~RLqaLEqq~ 202 (331)
.+|+..|++-..-.
T Consensus 184 ~elt~~lq~Eq~~~ 197 (617)
T PF15070_consen 184 MELTSALQSEQHVK 197 (617)
T ss_pred hHhhHHHHHHHHHH
Confidence 88877777644433
No 52
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=91.09 E-value=2.2 Score=45.86 Aligned_cols=42 Identities=26% Similarity=0.421 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKL 193 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~ 193 (331)
.+..|+.+|+.|+.||..|...+..+++....|..+-..++.
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r 464 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRR 464 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555544444433
No 53
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=91.04 E-value=9.5 Score=32.94 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=33.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020103 131 RAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKL 193 (331)
Q Consensus 131 R~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~ 193 (331)
+..|=+..|+.......++..-++.|+..+..|+.++..+..++..++.+...+..++..+..
T Consensus 46 ~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~ 108 (151)
T PF11559_consen 46 QRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEA 108 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555555555444444444444433
No 54
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=90.84 E-value=4.5 Score=33.39 Aligned_cols=59 Identities=22% Similarity=0.361 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 162 TLQTEATTLSAQLTLFQR------DTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVA 222 (331)
Q Consensus 162 ~Lq~ENs~L~~qlt~Lqr------~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~a 222 (331)
.+..+|..|..++..|+. +.+....||..|+.++..+..-. .....+++-.+|..|+.+
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~~~ 85 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELRDQ 85 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHhh
Confidence 344555555555555553 35677889999988877764443 224567888888888754
No 55
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.80 E-value=2.1 Score=34.52 Aligned_cols=43 Identities=26% Similarity=0.347 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLR 194 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~R 194 (331)
-|.-|.-+|..|..+|++|..++..++.....|..||..||..
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e 61 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEE 61 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777788888888888888888888888888888888764
No 56
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.54 E-value=3.8 Score=37.09 Aligned_cols=51 Identities=25% Similarity=0.389 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
..|.+|+.++..|+.++..|..++....+.+..|.-|...|..++..+|..
T Consensus 116 ~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k 166 (194)
T PF08614_consen 116 RRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEK 166 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555554444444444444444444444433
No 57
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=90.52 E-value=7.5 Score=35.91 Aligned_cols=58 Identities=17% Similarity=0.312 Sum_probs=35.3
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 020103 128 DPKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLS 185 (331)
Q Consensus 128 D~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~ 185 (331)
+-..+++.+++-+.-..+=..-+..+..++.++..|+.++..|..++..++++...|.
T Consensus 70 e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 70 EVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666665555666666666666666666666666655555544444
No 58
>PRK09039 hypothetical protein; Validated
Probab=90.39 E-value=11 Score=37.59 Aligned_cols=41 Identities=17% Similarity=0.243 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 158 RKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 158 ~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
.++..++.+.+....++..|+++...|..+...|...|...
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~a 163 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDAS 163 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444444444333333333333
No 59
>PRK00846 hypothetical protein; Provisional
Probab=90.31 E-value=1.9 Score=34.88 Aligned_cols=42 Identities=19% Similarity=0.093 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELK 192 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK 192 (331)
++|.+||.++...+.-+..|...++..++....|..+-+.|+
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~ 54 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL 54 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888887777777777776665555444444333333
No 60
>PRK11637 AmiB activator; Provisional
Probab=90.26 E-value=10 Score=38.22 Aligned_cols=13 Identities=23% Similarity=0.504 Sum_probs=7.7
Q ss_pred ccccccccC-CCcc
Q 020103 301 RLQGLDING-RNSH 313 (331)
Q Consensus 301 ~~qgl~i~~-~~~~ 313 (331)
+..|+||.. .|+.
T Consensus 328 ~~~Gi~i~~~~g~~ 341 (428)
T PRK11637 328 RWKGMVIGASEGTE 341 (428)
T ss_pred CCCCEEeecCCCCe
Confidence 456888855 3443
No 61
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=90.19 E-value=7.3 Score=40.30 Aligned_cols=73 Identities=27% Similarity=0.363 Sum_probs=60.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020103 130 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA 202 (331)
Q Consensus 130 KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~ 202 (331)
||++-+-++=+.-.++....++....||..++.+++++.++..++.........+...+..+..+|..++.|.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 6777776666666666667777888999999999999999999999888888888888888888888887776
No 62
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=90.14 E-value=6.6 Score=40.86 Aligned_cols=91 Identities=25% Similarity=0.330 Sum_probs=60.8
Q ss_pred HHHHhHHHHHHH--HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020103 134 RILANRQSAARS--KERKARYISELERKVQT--------------LQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQA 197 (331)
Q Consensus 134 RiLaNRESArRS--ReRKkqyleeLE~kVq~--------------Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqa 197 (331)
|+|+.--+|--| -.=|+.|-+++|+++.. +..+...+..++..|..+|..--.||..|.+.+++
T Consensus 374 rLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEa 453 (593)
T KOG4807|consen 374 RLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEA 453 (593)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554444433 34588899999987754 34455566677777777777777788888877776
Q ss_pred HHHHHHHHH-----------HHHHHHHHHHHHHHHHhc
Q 020103 198 MEQQAQLRD-----------ALNEALKKEVERLKVATG 224 (331)
Q Consensus 198 LEqq~qLrd-----------alne~Lk~EVqrLk~atg 224 (331)
-++..+-.. -||..|-+||.+||..+.
T Consensus 454 erqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtllt 491 (593)
T KOG4807|consen 454 ERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLT 491 (593)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 555432211 267778899999997653
No 63
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=89.85 E-value=5.5 Score=31.77 Aligned_cols=50 Identities=22% Similarity=0.443 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDTT--------DLSTENTELKLRLQAMEQQA 202 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~--------~L~~EN~eLK~RLqaLEqq~ 202 (331)
+.+.|..+..|+.||=.|.-+|-.|..... .+..+|-+||..+..|..+.
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el 59 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKREL 59 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999988888776654 45667888877777765554
No 64
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=89.56 E-value=2.5 Score=33.50 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 020103 159 KVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLR 194 (331)
Q Consensus 159 kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~R 194 (331)
.+..|+.++..|..+...|......|..||..|+..
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444433
No 65
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=89.53 E-value=15 Score=32.74 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTE 166 (331)
Q Consensus 151 qyleeLE~kVq~Lq~E 166 (331)
.+|..||+.+...+..
T Consensus 24 ~~v~~LEreLe~~q~~ 39 (140)
T PF10473_consen 24 DHVESLERELEMSQEN 39 (140)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444444444444433
No 66
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=89.20 E-value=6.2 Score=42.84 Aligned_cols=71 Identities=23% Similarity=0.375 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHh
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRD---ALNEALKKEVERLKVAT 223 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrd---alne~Lk~EVqrLk~at 223 (331)
+..|..++..|+.+...|..++..+.+.+.....++..+..+|..++....-+. .++..|..+|+.||..+
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnI 316 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNI 316 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 788888888888888888888888888888888888888888888777765555 67888899999998765
No 67
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=89.11 E-value=2.7 Score=44.00 Aligned_cols=47 Identities=15% Similarity=0.292 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHH
Q 020103 155 ELERKVQTLQTEATTLSAQLTLFQRD-TTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 155 eLE~kVq~Lq~ENs~L~~qlt~Lqr~-~~~L~~EN~eLK~RLqaLEqq 201 (331)
.|+.+-+.|..||..|.++...+..+ ...+..+..+|..+.+.+..+
T Consensus 77 ~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~ 124 (472)
T TIGR03752 77 KLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSE 124 (472)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33444444444444444333222222 223345555555554444333
No 68
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=89.10 E-value=4.3 Score=33.91 Aligned_cols=46 Identities=30% Similarity=0.424 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020103 157 ERKVQTLQTEATTL--SAQLTLFQRDTTDLSTENTELKLRLQAMEQQA 202 (331)
Q Consensus 157 E~kVq~Lq~ENs~L--~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~ 202 (331)
+.++..++++...| ...+..|+-...++..+-+.|..+++.++.+.
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~ 95 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQL 95 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44444444444443 44444444444445555555555666654443
No 69
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=88.75 E-value=11 Score=39.36 Aligned_cols=81 Identities=20% Similarity=0.115 Sum_probs=47.0
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHH
Q 020103 129 PKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTT-----DLSTENTELKLRLQAMEQQAQ 203 (331)
Q Consensus 129 ~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~-----~L~~EN~eLK~RLqaLEqq~q 203 (331)
+|+.-|+.+.+..-+-.-+-=++++.++|..++.|+.||..|..+......... .+..||.+.+...+.++...+
T Consensus 26 ~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~~~q 105 (459)
T KOG0288|consen 26 EKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRELREQ 105 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666655544433333334566788999999999999998877654332222 233455555554454544444
Q ss_pred HHHHHH
Q 020103 204 LRDALN 209 (331)
Q Consensus 204 Lrdaln 209 (331)
-.+.+|
T Consensus 106 ~~e~~n 111 (459)
T KOG0288|consen 106 KAEFEN 111 (459)
T ss_pred hhhhcc
Confidence 444433
No 70
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=88.51 E-value=22 Score=33.36 Aligned_cols=44 Identities=18% Similarity=0.265 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020103 156 LERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAME 199 (331)
Q Consensus 156 LE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLE 199 (331)
|+.++..|+.+...|...+..+++....+..+-..|+.++..++
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444443
No 71
>PRK04863 mukB cell division protein MukB; Provisional
Probab=88.36 E-value=15 Score=43.41 Aligned_cols=94 Identities=16% Similarity=0.151 Sum_probs=45.8
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020103 129 PKRAKRILANRQSAARSKERKARY-------------ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 195 (331)
Q Consensus 129 ~KR~KRiLaNRESArRSReRKkqy-------------leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RL 195 (331)
.++++.+-+.++.|.+.+.-+.++ +++|+.++...+.+...+..++..++.+...+..+-..|+.++
T Consensus 320 e~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqL 399 (1486)
T PRK04863 320 NEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQL 399 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666677777666554432 2333334444444444444444444444444455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 196 QAMEQQAQLRDALNEALKKEVERLKVA 222 (331)
Q Consensus 196 qaLEqq~qLrdalne~Lk~EVqrLk~a 222 (331)
..+.+...........+...+++|..+
T Consensus 400 aelqqel~elQ~el~q~qq~i~~Le~~ 426 (1486)
T PRK04863 400 ADYQQALDVQQTRAIQYQQAVQALERA 426 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544444433333444445555555443
No 72
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.28 E-value=1.6 Score=31.76 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 163 LQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 163 Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
|+.+...|......|..++..|..||..|+..+..+
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555556666666665554444
No 73
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=88.27 E-value=16 Score=39.07 Aligned_cols=67 Identities=19% Similarity=0.281 Sum_probs=39.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 020103 130 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQ 196 (331)
Q Consensus 130 KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLq 196 (331)
|....+++...........-+..++.|+..+...+.++..|..+...+......+..|+..|+.+..
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~ 216 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLA 216 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555666666666666666666666666666666666666555555555555555544433
No 74
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=88.09 E-value=8.7 Score=33.79 Aligned_cols=54 Identities=26% Similarity=0.369 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHH
Q 020103 149 KARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLS---TENTELKLRLQAMEQQA 202 (331)
Q Consensus 149 KkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~---~EN~eLK~RLqaLEqq~ 202 (331)
|-.-|..|..+++.|+.+...+..++..+........ ..|..|..||+.||.+.
T Consensus 33 ~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeel 89 (143)
T PF12718_consen 33 KEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEEL 89 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHH
Confidence 3444555555555555555555555544444333222 23345566666666554
No 75
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.96 E-value=17 Score=39.14 Aligned_cols=47 Identities=23% Similarity=0.427 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 020103 150 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQ 196 (331)
Q Consensus 150 kqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLq 196 (331)
+.|+..++.+.+.+......|..++.....++..|..+|.+||..+.
T Consensus 279 ~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 279 QAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888888888888888888888888888888888888877664
No 76
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=87.59 E-value=11 Score=41.30 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020103 154 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKL 193 (331)
Q Consensus 154 eeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~ 193 (331)
+-+..+.++|+.|...|+.++...+.++..|+.|..+|+.
T Consensus 541 e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 541 ESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555666666666666666666666666655555544
No 77
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=87.34 E-value=7.3 Score=41.56 Aligned_cols=61 Identities=21% Similarity=0.327 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 141 SAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 141 SArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
-+.+.+.-=++-...||.++..|+.++..|..++...++.+..|..++..+....+.+..+
T Consensus 147 ~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E 207 (546)
T PF07888_consen 147 ECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEE 207 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444566666666666666666666666666666666655555555544433
No 78
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=86.96 E-value=9.9 Score=39.78 Aligned_cols=75 Identities=28% Similarity=0.323 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHH----HH-------------HHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA----QLR----DA-------------LNE 210 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~----qLr----da-------------lne 210 (331)
.++.|+.++++|..||+.|+..++.|...++.|..+-..+..+|+++..+. +++ +. |.+
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELie 377 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIE 377 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 456777899999999999999999999999999988877777777665443 111 11 566
Q ss_pred HHHHHHHHHHHHhccC
Q 020103 211 ALKKEVERLKVATGEM 226 (331)
Q Consensus 211 ~Lk~EVqrLk~atge~ 226 (331)
-|.+|.++|+...+..
T Consensus 378 elrkelehlr~~kl~~ 393 (502)
T KOG0982|consen 378 ELRKELEHLRRRKLVL 393 (502)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6777888776655543
No 79
>PRK09039 hypothetical protein; Validated
Probab=86.93 E-value=17 Score=36.15 Aligned_cols=40 Identities=15% Similarity=0.275 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 159 KVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 159 kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
+|..|+.++..|+.|+..++.....++.+..+.+.+|+.+
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444
No 80
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=86.61 E-value=22 Score=35.36 Aligned_cols=70 Identities=19% Similarity=0.205 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKV 221 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~ 221 (331)
-+++=..++..|+.||..|......|++....|..+-..=..++..+|.+..-.....+.|..|+.++|.
T Consensus 54 K~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~Ks 123 (307)
T PF10481_consen 54 KVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKS 123 (307)
T ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666677777777777666666666666655555555566655543333345555555555443
No 81
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=86.57 E-value=4 Score=34.61 Aligned_cols=41 Identities=22% Similarity=0.361 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020103 155 ELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 195 (331)
Q Consensus 155 eLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RL 195 (331)
+|=..+..|+.....|..++..|+.+...|..||..|+..-
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN 45 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIEN 45 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888999999999999999999999999999995543
No 82
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=86.40 E-value=16 Score=29.68 Aligned_cols=48 Identities=29% Similarity=0.519 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHH
Q 020103 155 ELERKVQTLQTEATTLSAQLTLFQR---DTTDLSTENTELKLRLQAMEQQA 202 (331)
Q Consensus 155 eLE~kVq~Lq~ENs~L~~qlt~Lqr---~~~~L~~EN~eLK~RLqaLEqq~ 202 (331)
.|..++..|+.+-+.++.++..+.. ....|..+-..||.++..++.+.
T Consensus 40 ~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~ 90 (108)
T PF02403_consen 40 ELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQL 90 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666777777766665 36677777788888877776653
No 83
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=86.36 E-value=12 Score=42.69 Aligned_cols=46 Identities=26% Similarity=0.281 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020103 150 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 195 (331)
Q Consensus 150 kqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RL 195 (331)
...|++||.+++.++.+...+...+......+..|..+-..|+.+|
T Consensus 447 ~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L 492 (1041)
T KOG0243|consen 447 AEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKL 492 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444444444433333333433333333333
No 84
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=86.11 E-value=6.5 Score=38.44 Aligned_cols=17 Identities=35% Similarity=0.374 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHhcc
Q 020103 209 NEALKKEVERLKVATGE 225 (331)
Q Consensus 209 ne~Lk~EVqrLk~atge 225 (331)
...|++++..|...+|-
T Consensus 278 v~~Lk~~~~~Le~~~gw 294 (325)
T PF08317_consen 278 VKRLKAKVDALEKLTGW 294 (325)
T ss_pred HHHHHHHHHHHHHHHCc
Confidence 44566677777666664
No 85
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=86.00 E-value=28 Score=33.55 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 020103 204 LRDALNEALKKEVERLKVAT 223 (331)
Q Consensus 204 Lrdalne~Lk~EVqrLk~at 223 (331)
|...++..|-.+.+|++...
T Consensus 168 L~~~l~~ell~~yeri~~~~ 187 (239)
T COG1579 168 LKEKLDPELLSEYERIRKNK 187 (239)
T ss_pred HHHhcCHHHHHHHHHHHhcC
Confidence 33334444445555555544
No 86
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=85.89 E-value=6.7 Score=32.78 Aligned_cols=44 Identities=23% Similarity=0.369 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020103 159 KVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA 202 (331)
Q Consensus 159 kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~ 202 (331)
.+..++.+...+..++..++.+...+...|.+|-..+..+..+.
T Consensus 4 ~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~ 47 (106)
T PF05837_consen 4 EILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQ 47 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666666666666666666666666666666655554
No 87
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=85.83 E-value=24 Score=32.27 Aligned_cols=39 Identities=26% Similarity=0.406 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTEL 191 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eL 191 (331)
..+|+.++..|+.++..|..++..++.++..+...+.++
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~ 160 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEEL 160 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777777777777777777666666555554
No 88
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=85.52 E-value=26 Score=38.40 Aligned_cols=39 Identities=13% Similarity=0.317 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 141 SAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQR 179 (331)
Q Consensus 141 SArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr 179 (331)
..-++|++=++-+..||+++...+.....|.+||..-++
T Consensus 478 ~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk 516 (697)
T PF09726_consen 478 NLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERK 516 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888888889999988888888888888766553
No 89
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=85.47 E-value=29 Score=33.96 Aligned_cols=10 Identities=50% Similarity=0.664 Sum_probs=4.8
Q ss_pred HHHHHHHHHh
Q 020103 214 KEVERLKVAT 223 (331)
Q Consensus 214 ~EVqrLk~at 223 (331)
.||.+||...
T Consensus 276 ~Ev~~Lk~~~ 285 (325)
T PF08317_consen 276 SEVKRLKAKV 285 (325)
T ss_pred HHHHHHHHHH
Confidence 4455554443
No 90
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=85.28 E-value=15 Score=34.95 Aligned_cols=61 Identities=18% Similarity=0.272 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020103 156 LERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVAT 223 (331)
Q Consensus 156 LE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~at 223 (331)
||.+...+..+...|..++...+.+...+..++..|+.+.+.+..+ .+.|.+|-+.|+..+
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~E-------ydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDE-------YDRLLEEYSKLQEQI 209 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH-------HHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666776666655333 445555666665543
No 91
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=85.26 E-value=14 Score=31.77 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 154 SELERKVQTLQTEATTLSAQLTLFQ 178 (331)
Q Consensus 154 eeLE~kVq~Lq~ENs~L~~qlt~Lq 178 (331)
++|+..++.|+.++......+..|+
T Consensus 40 d~L~~~l~~L~~q~~s~~qr~~eLq 64 (107)
T PF09304_consen 40 DQLRNALQSLQAQNASRNQRIAELQ 64 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 92
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=85.03 E-value=0.037 Score=55.56 Aligned_cols=53 Identities=32% Similarity=0.355 Sum_probs=44.3
Q ss_pred cCChHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 020103 126 TVDPKRAKRILANRQSAAR---SKERKARYISELERKVQTLQ-TEATTLSAQLTLFQ 178 (331)
Q Consensus 126 ~~D~KR~KRiLaNRESArR---SReRKkqyleeLE~kVq~Lq-~ENs~L~~qlt~Lq 178 (331)
..+.||..|..+|+.+|.+ +|.||+.+...|..+|+.|+ .++.-|..++..|+
T Consensus 150 ~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lq 206 (395)
T KOG1414|consen 150 EPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQ 206 (395)
T ss_pred cchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccc
Confidence 3568999999999999999 99999999999999999999 66666555555433
No 93
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=84.64 E-value=37 Score=32.21 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 020103 162 TLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQ 200 (331)
Q Consensus 162 ~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEq 200 (331)
.++.|+..+..++..|+.+...|...|..|..+|..++.
T Consensus 213 ~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~ 251 (312)
T PF00038_consen 213 SAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQ 251 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHH
Confidence 344444444444444444444444445455444444443
No 94
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=84.58 E-value=1.6 Score=39.86 Aligned_cols=52 Identities=21% Similarity=0.374 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDAL 208 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdal 208 (331)
|+++|.|+++-=..|.-|..+|. +...|..+++.||..+-.|.++..+++.+
T Consensus 2 LeD~EsklN~AIERnalLE~ELd----EKE~L~~~~QRLkDE~RDLKqEl~V~ek~ 53 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELD----EKENLREEVQRLKDELRDLKQELIVQEKL 53 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCH--------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999884 34567788888888887777777665443
No 95
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=84.26 E-value=23 Score=32.54 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=8.6
Q ss_pred HHhHHHHHHHHHHHHHHHH
Q 020103 179 RDTTDLSTENTELKLRLQA 197 (331)
Q Consensus 179 r~~~~L~~EN~eLK~RLqa 197 (331)
+.+..|..-|.-|+.+|+.
T Consensus 74 qR~~~L~qvN~lLReQLEq 92 (182)
T PF15035_consen 74 QRSEELAQVNALLREQLEQ 92 (182)
T ss_pred HhHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 96
>PHA02562 46 endonuclease subunit; Provisional
Probab=84.21 E-value=34 Score=34.91 Aligned_cols=38 Identities=18% Similarity=0.325 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020103 154 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTEL 191 (331)
Q Consensus 154 eeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eL 191 (331)
..|+.++..|+.+...+..++..+..++..+..+..++
T Consensus 361 ~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 398 (562)
T PHA02562 361 KKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSEL 398 (562)
T ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444443333
No 97
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=84.11 E-value=6.7 Score=34.57 Aligned_cols=52 Identities=23% Similarity=0.415 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 150 ARYISELERKVQTLQTEATTLSAQL--TLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 150 kqyleeLE~kVq~Lq~ENs~L~~ql--t~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
+..+.+|+..+..|+.+...|...+ ..|......|..|+..|..+|+.|...
T Consensus 85 ~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 85 REELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4456667777777777777776666 556677778888888888888877653
No 98
>PF15058 Speriolin_N: Speriolin N terminus
Probab=83.99 E-value=1.6 Score=40.92 Aligned_cols=43 Identities=28% Similarity=0.400 Sum_probs=32.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 177 FQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERL 219 (331)
Q Consensus 177 Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrL 219 (331)
+..++..|+.||.+||+++..|+....|+.+|.|+..+-++|-
T Consensus 10 lrhqierLv~ENeeLKKlVrLirEN~eLksaL~ea~~~~~~r~ 52 (200)
T PF15058_consen 10 LRHQIERLVRENEELKKLVRLIRENHELKSALGEACAEPSQRQ 52 (200)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 4455667888888898888888877777777777776665554
No 99
>PRK10698 phage shock protein PspA; Provisional
Probab=83.94 E-value=16 Score=34.25 Aligned_cols=60 Identities=18% Similarity=0.289 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 149 KARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDAL 208 (331)
Q Consensus 149 KkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdal 208 (331)
-...+..|+.++...+.....|..++..|+..+..+...-..|+.|....+.+.++.+.+
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~ 156 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQL 156 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888888888889999999999999999999999999999998888887663
No 100
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=83.93 E-value=9.4 Score=33.66 Aligned_cols=28 Identities=29% Similarity=0.496 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRD 180 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~ 180 (331)
+.+|..++..|..++..|..++..|...
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~ 108 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSE 108 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5566666666666666666666555443
No 101
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=83.89 E-value=18 Score=35.95 Aligned_cols=56 Identities=23% Similarity=0.285 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020103 162 TLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATG 224 (331)
Q Consensus 162 ~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~atg 224 (331)
.|+.....|...+..-+.++.-|.......|.+|+.|++.. ..++.|++|...++.
T Consensus 78 ~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqel-------kr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 78 NLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQEL-------KRCKSELERSQQAAS 133 (307)
T ss_pred HHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhc
Confidence 33333444444444444455555555566666666665542 234455555555544
No 102
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=83.72 E-value=23 Score=32.49 Aligned_cols=21 Identities=29% Similarity=0.232 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHhccCCC
Q 020103 208 LNEALKKEVERLKVATGEMMT 228 (331)
Q Consensus 208 lne~Lk~EVqrLk~atge~~~ 228 (331)
..+.+++++..++.++.-..+
T Consensus 136 ~i~~~~~~~~~~~~~anrwTD 156 (188)
T PF03962_consen 136 KIEKLKEEIKIAKEAANRWTD 156 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 455666677777766655443
No 103
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=83.47 E-value=28 Score=37.24 Aligned_cols=50 Identities=18% Similarity=0.348 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQ 200 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEq 200 (331)
.-+.+++..+..++++...+...+..+..+...|..||..|...|+.+..
T Consensus 141 e~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 141 EKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 33444455555555555555566666666666666666666655555543
No 104
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=82.99 E-value=20 Score=35.28 Aligned_cols=52 Identities=25% Similarity=0.445 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 150 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 150 kqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
..-+.+++.+++.|+.|...|..++..|+++...+..|-..|+.++..++.+
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~e 93 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEE 93 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777777777777777777777777776666666544
No 105
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=82.93 E-value=1.4 Score=36.99 Aligned_cols=76 Identities=24% Similarity=0.318 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 020103 152 YISELERKVQTLQTEATTLSAQL-TLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEMM 227 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~ql-t~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~atge~~ 227 (331)
...++|..+..+..|...|.+.| .....-...-..+...+..+...++.+..-.+.+.+.|..++..||.....+.
T Consensus 9 ~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~~~~~ 85 (100)
T PF06428_consen 9 RREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVMESME 85 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCTTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34556666666666666666655 33333222233334445555555555555555677888888899998766543
No 106
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=82.87 E-value=7.3 Score=44.37 Aligned_cols=77 Identities=23% Similarity=0.324 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 020103 150 ARYISELERKVQTLQTEATTLSAQLTLFQRDT--TDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEM 226 (331)
Q Consensus 150 kqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~--~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~atge~ 226 (331)
|.++++|+.--..|..+..-|..|+..++.+. ..++.|+=.||+++..|+.+.-.-.+..+.|..|.+.|-++...+
T Consensus 263 kdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL 341 (1195)
T KOG4643|consen 263 KDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQL 341 (1195)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456666666666666666667776666666 667788899999999999988666688999999999998877554
No 107
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=82.58 E-value=33 Score=39.45 Aligned_cols=56 Identities=18% Similarity=0.353 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 143 ARSKERKARYISELERKV-QTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 143 rRSReRKkqyleeLE~kV-q~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
++...+..+.|.+++.+. +.++.+...+..++..|+++...+...+..|+..++.+
T Consensus 371 k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~ 427 (1074)
T KOG0250|consen 371 KKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEV 427 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444 44444444444444444444444444444554444444
No 108
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=82.41 E-value=21 Score=33.05 Aligned_cols=62 Identities=18% Similarity=0.324 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 146 KERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDA 207 (331)
Q Consensus 146 ReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrda 207 (331)
+..-...+..|+.++..++.....|..++..|++++..+.+.-..|+.|.+....+..+...
T Consensus 94 k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~ 155 (219)
T TIGR02977 94 KQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQ 155 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344566778888888888888899999999999888888888898888888777666555
No 109
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=82.36 E-value=17 Score=35.47 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRD 180 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~ 180 (331)
+..+++..|++.++.|+..|..+++.++.+
T Consensus 135 e~~ee~kekl~E~~~EkeeL~~eleele~e 164 (290)
T COG4026 135 EDYEELKEKLEELQKEKEELLKELEELEAE 164 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555666666666665555544433
No 110
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=82.15 E-value=21 Score=29.87 Aligned_cols=48 Identities=21% Similarity=0.364 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTL--QTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 151 qyleeLE~kVq~L--q~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
.++..||.+++.| ..+...|...++.+..++..+..+-+.+...+..|
T Consensus 49 ~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 49 RRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555 44555555555555555555555554444444433
No 111
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=82.15 E-value=25 Score=38.75 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 020103 181 TTDLSTENTELKLRLQAM 198 (331)
Q Consensus 181 ~~~L~~EN~eLK~RLqaL 198 (331)
+.+|..|++.|...++.+
T Consensus 123 fE~~Khei~rl~Ee~~~l 140 (717)
T PF09730_consen 123 FEGLKHEIKRLEEEIELL 140 (717)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 112
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=81.97 E-value=15 Score=30.12 Aligned_cols=42 Identities=26% Similarity=0.397 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLR 194 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~R 194 (331)
|.-|.-+|..|..+|..|..++..+......|..||..||..
T Consensus 20 I~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E 61 (79)
T PRK15422 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQ 61 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555566666666554
No 113
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=81.93 E-value=28 Score=32.23 Aligned_cols=35 Identities=23% Similarity=0.403 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 146 KERKARYISELERKVQTLQTEATTLSAQLTLFQRD 180 (331)
Q Consensus 146 ReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~ 180 (331)
+++..+.+.+-+.....++.+...|..++..|+++
T Consensus 112 ~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 112 RKKLEKKIEEKEAELKELESEIKELEMKILELQRQ 146 (190)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 33333344433333344444444444444444443
No 114
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=81.90 E-value=19 Score=39.14 Aligned_cols=86 Identities=21% Similarity=0.370 Sum_probs=48.7
Q ss_pred HHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 020103 136 LANRQSAARSKERK-ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTEL---KLRLQAMEQQAQLRDALNEA 211 (331)
Q Consensus 136 LaNRESArRSReRK-kqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eL---K~RLqaLEqq~qLrdalne~ 211 (331)
..+|..+.+.+-.+ ...+.+|+.++..|+.++..|..++..+.+....-...++++ ..++..|+...+-.....+.
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~ 499 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEE 499 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333 345666666666777777777776666666554433334433 34455555554444556677
Q ss_pred HHHHHHHHHH
Q 020103 212 LKKEVERLKV 221 (331)
Q Consensus 212 Lk~EVqrLk~ 221 (331)
|+.++.+|+.
T Consensus 500 L~~~l~~l~k 509 (652)
T COG2433 500 LERKLAELRK 509 (652)
T ss_pred HHHHHHHHHH
Confidence 7777777763
No 115
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=81.67 E-value=23 Score=36.17 Aligned_cols=63 Identities=29% Similarity=0.401 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 020103 158 RKVQTLQTEATTLSAQLTLFQR---DTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEMM 227 (331)
Q Consensus 158 ~kVq~Lq~ENs~L~~qlt~Lqr---~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~atge~~ 227 (331)
.+++.|+.+.+.++.++..+.. +...|..+-++||.++..++.+ ...+.+++..+-..++-++
T Consensus 42 ~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~-------~~~~~~~~~~~~~~iPN~~ 107 (425)
T PRK05431 42 TELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAE-------LDELEAELEELLLRIPNLP 107 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhCCCCC
Confidence 3444444444444444443221 1223444445555555544433 3334444444444444443
No 116
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=81.59 E-value=17 Score=29.63 Aligned_cols=68 Identities=21% Similarity=0.340 Sum_probs=39.9
Q ss_pred HHHhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHH
Q 020103 135 ILANRQSAARSKERKA------RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLST---ENTELKLRLQAMEQQA 202 (331)
Q Consensus 135 iLaNRESArRSReRKk------qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~---EN~eLK~RLqaLEqq~ 202 (331)
+..|.+..+.+-.++. ..+.+|..+...++.+...|.++-..+.++...+.. +-.+|+.++..+..+.
T Consensus 7 ir~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i 83 (108)
T PF02403_consen 7 IRENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEI 83 (108)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHH
Confidence 3346666555555442 455566666666777777777666666666655554 3455656655554443
No 117
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=81.50 E-value=12 Score=37.11 Aligned_cols=40 Identities=23% Similarity=0.279 Sum_probs=27.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 020103 174 LTLFQRDTTDLSTENTELKLRLQAMEQQA-QLRDALNEALK 213 (331)
Q Consensus 174 lt~Lqr~~~~L~~EN~eLK~RLqaLEqq~-qLrdalne~Lk 213 (331)
-..|.-++.+|+.+|.+||.|++.||.+- -|++++.++.+
T Consensus 250 ~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~ 290 (294)
T KOG4571|consen 250 KEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVYK 290 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667788899999999988887663 44545555444
No 118
>smart00338 BRLZ basic region leucin zipper.
Probab=81.41 E-value=11 Score=28.28 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=9.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHH
Q 020103 177 FQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 177 Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
|+.+...|..+|..|+.++..|
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l 52 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERL 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444
No 119
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=81.38 E-value=14 Score=32.21 Aligned_cols=54 Identities=26% Similarity=0.438 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020103 170 LSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVAT 223 (331)
Q Consensus 170 L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~at 223 (331)
|..+-+-.+++-..+..|-.+|+.||..||.+.+-.+.+++-|...|.-|..++
T Consensus 9 LQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aL 62 (134)
T PF08232_consen 9 LQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYAL 62 (134)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555566666666666666666666655555555555554444333
No 120
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=81.37 E-value=45 Score=33.11 Aligned_cols=65 Identities=23% Similarity=0.371 Sum_probs=35.3
Q ss_pred HhhhhccCChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020103 120 KLAELWTVDPKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAME 199 (331)
Q Consensus 120 ~LaEla~~D~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLE 199 (331)
.|+| +++|-.|=|+.| ..|..+...|.-++..|...+..++..+..+..|+. ..+..++
T Consensus 85 ~l~e---vEekyrkAMv~n---------------aQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~---eK~~elE 143 (302)
T PF09738_consen 85 SLAE---VEEKYRKAMVSN---------------AQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYR---EKIRELE 143 (302)
T ss_pred HHHH---HHHHHHHHHHHH---------------hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 4554 678888889998 335555555555555555555555555444444443 2334444
Q ss_pred HHHHHH
Q 020103 200 QQAQLR 205 (331)
Q Consensus 200 qq~qLr 205 (331)
.+++-.
T Consensus 144 r~K~~~ 149 (302)
T PF09738_consen 144 RQKRAH 149 (302)
T ss_pred HHHHHH
Confidence 444333
No 121
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=81.26 E-value=48 Score=31.07 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 020103 144 RSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELK 192 (331)
Q Consensus 144 RSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK 192 (331)
..+..-.+.+..|+.++..|+..|..|...++..+++...|..+...+.
T Consensus 49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 49 DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555556666666666655555555555555555554443
No 122
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=81.23 E-value=21 Score=38.32 Aligned_cols=59 Identities=17% Similarity=0.366 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 149 KARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDA 207 (331)
Q Consensus 149 KkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrda 207 (331)
..+-+++|..+++.|..+...+..++..++..+..+..+..+.+...+.++.+..++..
T Consensus 326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k 384 (594)
T PF05667_consen 326 QEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKK 384 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666666666666666666666666555443
No 123
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=80.95 E-value=36 Score=29.37 Aligned_cols=54 Identities=22% Similarity=0.252 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020103 144 RSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQA 197 (331)
Q Consensus 144 RSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqa 197 (331)
+|.+--|--.++|-.+...|++-+..|..+...+.+.+..|.++-.++...|..
T Consensus 23 ~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 23 RSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555555555555555555555555555555544
No 124
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=80.81 E-value=27 Score=32.91 Aligned_cols=43 Identities=35% Similarity=0.318 Sum_probs=25.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 020103 180 DTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEM 226 (331)
Q Consensus 180 ~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~atge~ 226 (331)
.+..+..||.+||.++..++.+.. ..+.|++|.++||...+..
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~----~~~~l~~en~~L~~lL~~~ 112 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQ----ELEQLEAENARLRELLNLK 112 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCc
Confidence 344566666666666666554432 2246677778888776543
No 125
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=80.77 E-value=18 Score=36.09 Aligned_cols=39 Identities=36% Similarity=0.400 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 160 VQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 160 Vq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
....+.|++.|..++..+++++..+..||.+|...|...
T Consensus 229 ~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~s 267 (306)
T PF04849_consen 229 NRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQAS 267 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 345678889999999999999999999999999998775
No 126
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=80.65 E-value=10 Score=37.35 Aligned_cols=61 Identities=23% Similarity=0.342 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 155 ELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKE 215 (331)
Q Consensus 155 eLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~E 215 (331)
+.+.+++..+.+...+..++..|+.++.....+...|...++..+........|...|..|
T Consensus 232 ~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E 292 (344)
T PF12777_consen 232 EAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGE 292 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcch
Confidence 3444444444444455555555555666666666666666665554433333344444433
No 127
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=80.60 E-value=32 Score=31.56 Aligned_cols=31 Identities=19% Similarity=0.338 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020103 161 QTLQTEATTLSAQLTLFQRDTTDLSTENTEL 191 (331)
Q Consensus 161 q~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eL 191 (331)
..++.++..|..++..|+.+...|......+
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ 153 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQL 153 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333333
No 128
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=80.40 E-value=10 Score=32.54 Aligned_cols=40 Identities=25% Similarity=0.379 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020103 154 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKL 193 (331)
Q Consensus 154 eeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~ 193 (331)
.+|=.++..|+.....|..++..|+.....|..||..|+.
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~i 43 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRL 43 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788888888888999999999988889889988844
No 129
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=80.39 E-value=41 Score=38.74 Aligned_cols=52 Identities=25% Similarity=0.339 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhHHHHHHHHHHHHHHHHHH
Q 020103 148 RKARYISELERKVQTLQTEATTLSAQLTLFQR----------DTTDLSTENTELKLRLQAME 199 (331)
Q Consensus 148 RKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr----------~~~~L~~EN~eLK~RLqaLE 199 (331)
.+.+++++||..+..|+.||..|..+|..|.. .+..+...++++|+.+.+|+
T Consensus 527 ~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~idaL~ 588 (1195)
T KOG4643|consen 527 LLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKYIDALN 588 (1195)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 34566777888888888888888777766654 23334445555555555544
No 130
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=80.37 E-value=15 Score=38.70 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQ 178 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lq 178 (331)
+.+|+.+++.|..+|..|.++++.|+
T Consensus 68 ~k~~r~~~~~l~~~N~~l~~eN~~L~ 93 (472)
T TIGR03752 68 VKELRKRLAKLISENEALKAENERLQ 93 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666665555555544443
No 131
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=80.30 E-value=4 Score=39.48 Aligned_cols=40 Identities=33% Similarity=0.368 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 020103 184 LSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEM 226 (331)
Q Consensus 184 L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~atge~ 226 (331)
|..||.+||.++..+..+.+. ..+.|++|-++||..++..
T Consensus 71 l~~EN~~Lr~e~~~l~~~~~~---~~~~l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 71 LEYENYKLRQELLKKNQQLEI---LTQNLKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCc
Confidence 455555555555544222221 1233666677777766543
No 132
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=80.19 E-value=22 Score=35.61 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQ 178 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lq 178 (331)
-+.-+-.+++.|+.+|..|+.....++
T Consensus 42 El~~ek~~~~~L~~e~~~lr~~sv~~~ 68 (310)
T PF09755_consen 42 ELETEKARCKHLQEENRALREASVRIQ 68 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444566666666666665544443
No 133
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=80.16 E-value=30 Score=30.73 Aligned_cols=73 Identities=19% Similarity=0.187 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 020103 154 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEM 226 (331)
Q Consensus 154 eeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~atge~ 226 (331)
+.....+...+..+..+..+|+.|......-..+-..|+..++.......-++..++.|+.|-+.||.=.+..
T Consensus 29 ~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa~t~ 101 (135)
T TIGR03495 29 ERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRWADTP 101 (135)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhcCC
Confidence 3334445556666666666776666655555556666666667666666667777888888888888766543
No 134
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=80.09 E-value=18 Score=38.68 Aligned_cols=52 Identities=25% Similarity=0.289 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA 202 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~ 202 (331)
+.|+.+..+...++.||.+|..+|..++++...+..|+.+|+.-|+++.+-.
T Consensus 219 eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~ 270 (596)
T KOG4360|consen 219 EELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQ 270 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3456666677788999999999999999999999999999999999876543
No 135
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=80.02 E-value=14 Score=38.39 Aligned_cols=42 Identities=26% Similarity=0.321 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020103 154 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 195 (331)
Q Consensus 154 eeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RL 195 (331)
+.+-.+...+..+...+.+.++..+-....|..||..|..+.
T Consensus 30 s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 30 SRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666666666666666666666666665544
No 136
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=79.93 E-value=38 Score=36.23 Aligned_cols=64 Identities=25% Similarity=0.382 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 148 RKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEA 211 (331)
Q Consensus 148 RKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~ 211 (331)
.=.+.++.++..|+.|...+..+..++......+..+..+-..|+.+.+.++.++++-.++.+.
T Consensus 42 ~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~ 105 (618)
T PF06419_consen 42 PVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLER 105 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455788999999999999999999999999999999999999999999999998887775444
No 137
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=79.91 E-value=11 Score=36.33 Aligned_cols=49 Identities=12% Similarity=0.254 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 150 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 150 kqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
.+|.+..++....++....+=+.....++.+...|+.||..|+.+++.|
T Consensus 193 ~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l 241 (269)
T KOG3119|consen 193 PEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQL 241 (269)
T ss_pred HHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555444444444555555556666666665555444
No 138
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=79.89 E-value=27 Score=31.82 Aligned_cols=56 Identities=23% Similarity=0.359 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDA 207 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrda 207 (331)
.+..|+..+..+......|...+..++.++..+..+-..|+.+......+.++.++
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~ 154 (221)
T PF04012_consen 99 QAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEA 154 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666666666666666666666666666666666555544
No 139
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=79.81 E-value=17 Score=36.10 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRD 180 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~ 180 (331)
+.|-|.+++.=++|+..|+.|+.-++++
T Consensus 77 Lkes~~~l~dRetEI~eLksQL~RMrED 104 (305)
T PF15290_consen 77 LKESENRLHDRETEIDELKSQLARMRED 104 (305)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3444555555556666666666555544
No 140
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=79.71 E-value=0.3 Score=49.10 Aligned_cols=45 Identities=29% Similarity=0.475 Sum_probs=38.7
Q ss_pred CChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 127 VDPKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLS 171 (331)
Q Consensus 127 ~D~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~ 171 (331)
.|+++.|=+.+||.+|-++|.|||..+..|+.+...+..++..|.
T Consensus 282 p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~ 326 (395)
T KOG1414|consen 282 PDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL 326 (395)
T ss_pred chhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence 356665558899999999999999999999999999888887765
No 141
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=79.63 E-value=26 Score=37.47 Aligned_cols=53 Identities=25% Similarity=0.345 Sum_probs=39.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020103 172 AQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATG 224 (331)
Q Consensus 172 ~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~atg 224 (331)
.++..+......+.+|...+|.++..|+.+...-...|..|..+++++|..+.
T Consensus 141 e~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld 193 (546)
T KOG0977|consen 141 EKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLD 193 (546)
T ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 33344445566778888888999998888875555788888888888887543
No 142
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=79.62 E-value=43 Score=33.28 Aligned_cols=88 Identities=19% Similarity=0.217 Sum_probs=50.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--------HHHHHHH
Q 020103 135 ILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAME--------QQAQLRD 206 (331)
Q Consensus 135 iLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLE--------qq~qLrd 206 (331)
.++|.+.--.+|.---+.+..||..+.++......|..-|..|++.++.|+.-.+.----|+.++ .-+.|-.
T Consensus 75 ~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLES 154 (333)
T KOG1853|consen 75 QERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLES 154 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555556677777777777777777777777777777777654332212233333 2233322
Q ss_pred H--HHHHHHHHHHHHHHH
Q 020103 207 A--LNEALKKEVERLKVA 222 (331)
Q Consensus 207 a--lne~Lk~EVqrLk~a 222 (331)
- ..++|-++|+|||--
T Consensus 155 ELdEke~llesvqRLkdE 172 (333)
T KOG1853|consen 155 ELDEKEVLLESVQRLKDE 172 (333)
T ss_pred HhhHHHHHHHHHHHHHHH
Confidence 2 234566777777654
No 143
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=79.37 E-value=41 Score=29.13 Aligned_cols=14 Identities=36% Similarity=0.423 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHH
Q 020103 208 LNEALKKEVERLKV 221 (331)
Q Consensus 208 lne~Lk~EVqrLk~ 221 (331)
.++.|+..|..||.
T Consensus 97 ~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 97 EVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666666654
No 144
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=79.28 E-value=1.2 Score=36.99 Aligned_cols=48 Identities=23% Similarity=0.384 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
.||+.|...+..|..++..|..++..|+.+...+...+..|+..|...
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~a 72 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQA 72 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhh
Confidence 588999999999999999999999998888888877777777665443
No 145
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=79.13 E-value=7.4 Score=33.45 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020103 158 RKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAME 199 (331)
Q Consensus 158 ~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLE 199 (331)
.+|-.||.-...|+.++..+++++-.|..||+.|-+.|+.|-
T Consensus 63 tQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLM 104 (120)
T KOG3650|consen 63 TQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLM 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Confidence 456677777788999999999999999999999999888763
No 146
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=79.12 E-value=34 Score=28.04 Aligned_cols=66 Identities=17% Similarity=0.201 Sum_probs=57.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020103 132 AKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQA 197 (331)
Q Consensus 132 ~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqa 197 (331)
+.++-..+......=..|..-+..||.++..|..|.+.-..+.-.+.+....|..|+..|+..+..
T Consensus 5 L~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~K 70 (96)
T PF08647_consen 5 LVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSK 70 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 345666777777777888899999999999999999999999999999999999999999776644
No 147
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=78.89 E-value=15 Score=34.61 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020103 150 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKL 193 (331)
Q Consensus 150 kqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~ 193 (331)
...+.+|..+.+.|+.|+..|..++..+ ..+..||.+|+.
T Consensus 68 ~~~~~~l~~en~~L~~e~~~l~~~~~~~----~~l~~en~~L~~ 107 (276)
T PRK13922 68 LASLFDLREENEELKKELLELESRLQEL----EQLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 3344444444444444444444443332 245556666644
No 148
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=78.73 E-value=58 Score=31.36 Aligned_cols=78 Identities=15% Similarity=0.241 Sum_probs=47.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q 020103 132 AKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA--QLRDALN 209 (331)
Q Consensus 132 ~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~--qLrdaln 209 (331)
+|=.++-|+.++---++|.+|+..+......+.+|...|..++.. . |+.+|..++..+.+. -++.++.
T Consensus 151 lK~vlk~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~-------a---~~~~k~e~~Rf~~~k~~D~k~~~~ 220 (243)
T cd07666 151 LMGVIKRRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVEC-------A---NNALKADWERWKQNMQTDLRSAFT 220 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH-------H---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777777777776666544334444444444444433 2 666888888877765 5677777
Q ss_pred HHHHHHHHHH
Q 020103 210 EALKKEVERL 219 (331)
Q Consensus 210 e~Lk~EVqrL 219 (331)
+.++.-|+.-
T Consensus 221 ~yae~~i~~~ 230 (243)
T cd07666 221 DMAENNISYY 230 (243)
T ss_pred HHHHHHHHHH
Confidence 7766555443
No 149
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=78.71 E-value=13 Score=28.57 Aligned_cols=48 Identities=21% Similarity=0.351 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKK 214 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~ 214 (331)
+.+||.++..+....+ .+..||.+|+..++.+++..+---.++|++..
T Consensus 2 i~elEn~~~~~~~~i~--------------tvk~en~~i~~~ve~i~envk~ll~lYE~Vs~ 49 (55)
T PF05377_consen 2 IDELENELPRIESSIN--------------TVKKENEEISESVEKIEENVKDLLSLYEVVSN 49 (55)
T ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566666666655443 34556777777777777765444356666543
No 150
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=78.42 E-value=28 Score=38.27 Aligned_cols=66 Identities=30% Similarity=0.419 Sum_probs=40.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 134 RILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQL---TLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 134 RiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~ql---t~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
-+|.-+..|+.-|-|-.+.+ ||.+-+.|.+.-.-|..++ +.|+.+...|++|-.+||.++.+||.+
T Consensus 128 svLteqVeaQgEKIrDLE~c--ie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEke 196 (861)
T KOG1899|consen 128 SVLTEQVEAQGEKIRDLETC--IEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKE 196 (861)
T ss_pred HHHHHHHHHhhhhHHHHHHH--HHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHH
Confidence 46666777777766665543 3333333333333333333 667777778888888888888887743
No 151
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=78.32 E-value=10 Score=31.43 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 171 SAQLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 171 ~~qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
..++..|+.+..+|..||..|+.+|...
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~l~~e 75 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKKLDTE 75 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555555544443
No 152
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=78.17 E-value=12 Score=35.68 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 020103 149 KARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQ 196 (331)
Q Consensus 149 KkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLq 196 (331)
.+..++..+.+.+.+++.+..|..|...++++++.|..||+.|..+++
T Consensus 163 L~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 163 LETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 334455555566666667777778888888888888888888866654
No 153
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=77.97 E-value=29 Score=39.64 Aligned_cols=63 Identities=19% Similarity=0.335 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----------HHHHHHHHHHHHHHHHHHH
Q 020103 139 RQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTT----------DLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 139 RESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~----------~L~~EN~eLK~RLqaLEqq 201 (331)
++.+.+-=+||..-+++|++....|..+...+..+|..|+++.+ .|..-|-+|..++..||.+
T Consensus 398 ~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeet 470 (1243)
T KOG0971|consen 398 HQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEET 470 (1243)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHH
Confidence 56667777888889999999888888888888888888887754 3444455555555544444
No 154
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=77.97 E-value=27 Score=34.10 Aligned_cols=53 Identities=25% Similarity=0.310 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020103 147 ERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAME 199 (331)
Q Consensus 147 eRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLE 199 (331)
+--+..++++-.+...|..++..|..++..++.+...|..||..|...+..+.
T Consensus 138 ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 138 EELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 34455566666666777777777777777777777777777776655554444
No 155
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=77.66 E-value=22 Score=43.11 Aligned_cols=83 Identities=23% Similarity=0.230 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 141 SAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLK 220 (331)
Q Consensus 141 SArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk 220 (331)
.|.|++.+=..-|.+||..+......+..+..++..++.+...|..+........+.+..+....+..+.+|..|++.|+
T Consensus 1601 e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~ 1680 (1930)
T KOG0161|consen 1601 EALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELR 1680 (1930)
T ss_pred HHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334333333455666666665555555555555544444444444444444334333333333344444444444444
Q ss_pred HHh
Q 020103 221 VAT 223 (331)
Q Consensus 221 ~at 223 (331)
..+
T Consensus 1681 ~~l 1683 (1930)
T KOG0161|consen 1681 EKL 1683 (1930)
T ss_pred HHH
Confidence 443
No 156
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=77.64 E-value=47 Score=30.91 Aligned_cols=72 Identities=24% Similarity=0.267 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHh
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA-------QLRDALNEALKKEVERLKVAT 223 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~-------qLrdalne~Lk~EVqrLk~at 223 (331)
.|...||..+..|+.+...++.++..+...-... ..+....|..|+.+. .--+.-+..|+.||.+||...
T Consensus 136 ~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~---Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~ 212 (221)
T PF05700_consen 136 IHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRR---QEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKA 212 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888877665432211 112223334444433 222234555667777777665
Q ss_pred cc
Q 020103 224 GE 225 (331)
Q Consensus 224 ge 225 (331)
++
T Consensus 213 ~~ 214 (221)
T PF05700_consen 213 AE 214 (221)
T ss_pred HH
Confidence 44
No 157
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=77.62 E-value=64 Score=32.99 Aligned_cols=53 Identities=25% Similarity=0.327 Sum_probs=34.7
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 020103 128 DPKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLS 185 (331)
Q Consensus 128 D~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~ 185 (331)
++..+++.+++|.. . -=...+.+|..+...|+.+...|.++...+.++...+.
T Consensus 10 n~~~v~~~l~~R~~---~--~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~ 62 (425)
T PRK05431 10 NPEAVKEALAKRGF---P--LDVDELLELDEERRELQTELEELQAERNALSKEIGQAK 62 (425)
T ss_pred CHHHHHHHHHhcCC---c--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666666621 0 01456677788888888888888888888777776543
No 158
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=77.62 E-value=66 Score=30.52 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 148 RKARYISELERKVQTLQTEATTLSAQLTLFQRD 180 (331)
Q Consensus 148 RKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~ 180 (331)
+-+..+..|+.++..|+..|..|..++..++..
T Consensus 220 ~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~ 252 (312)
T PF00038_consen 220 ELRRQIQSLQAELESLRAKNASLERQLRELEQR 252 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHhhhhhhccccchhhhhhhHHHHHHH
Confidence 444455666666666666666666666665543
No 159
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=77.22 E-value=35 Score=34.79 Aligned_cols=85 Identities=21% Similarity=0.232 Sum_probs=0.0
Q ss_pred ChHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHH
Q 020103 128 DPKRAKRILANRQS----AARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRD----TTDLSTENTELKLRLQAME 199 (331)
Q Consensus 128 D~KR~KRiLaNRES----ArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~----~~~L~~EN~eLK~RLqaLE 199 (331)
++..+++.+++|-. ....=..--+...+|..+++.|+.+.+.++.++..+.+. ...|..+-++||.+|..++
T Consensus 10 n~~~v~~~l~~R~~~~~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 89 (418)
T TIGR00414 10 NPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELS 89 (418)
T ss_pred CHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH-HHHHHHHHHH
Q 020103 200 QQA-QLRDALNEAL 212 (331)
Q Consensus 200 qq~-qLrdalne~L 212 (331)
.+. .+.+.+++.+
T Consensus 90 ~~~~~~~~~~~~~~ 103 (418)
T TIGR00414 90 AALKALEAELQDKL 103 (418)
T ss_pred HHHHHHHHHHHHHH
No 160
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.15 E-value=23 Score=36.11 Aligned_cols=53 Identities=26% Similarity=0.310 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 157 ERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEV 216 (331)
Q Consensus 157 E~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EV 216 (331)
|.++..++.+.+.|.. .-+.|..--++|+.-+++||++.+.-..-.++|+.-+
T Consensus 224 eeeme~~~aeq~slkR-------t~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~ 276 (365)
T KOG2391|consen 224 EEEMERLQAEQESLKR-------TEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKV 276 (365)
T ss_pred HHHHHHHHHHHHHHHh-------hHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3444444444444444 4444555555555566666666655455566666433
No 161
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=77.01 E-value=11 Score=27.42 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Q 020103 170 LSAQLTLFQRDTTDLSTENTELK 192 (331)
Q Consensus 170 L~~qlt~Lqr~~~~L~~EN~eLK 192 (331)
|......|+..++.|..+|..|+
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~ 25 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLK 25 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555553
No 162
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=76.89 E-value=58 Score=36.97 Aligned_cols=64 Identities=16% Similarity=0.246 Sum_probs=33.4
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020103 128 DPKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTEL 191 (331)
Q Consensus 128 D~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eL 191 (331)
|..++|--++-+.+.+---++-+..++++|.+....+.....|...++.+......|...|...
T Consensus 387 e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di 450 (980)
T KOG0980|consen 387 EQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDI 450 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445554555555555444444445666666666666666665555555554444444333333
No 163
>PF15294 Leu_zip: Leucine zipper
Probab=76.37 E-value=9.2 Score=37.61 Aligned_cols=45 Identities=22% Similarity=0.454 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 020103 156 LERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQ 200 (331)
Q Consensus 156 LE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEq 200 (331)
|..++..|+.||..|+.++..++.++.....|+..|+.+|..+.-
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788888888888888888888888888888888887777655
No 164
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=76.26 E-value=47 Score=29.23 Aligned_cols=50 Identities=26% Similarity=0.365 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQ 200 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEq 200 (331)
...+.||.+++.|..++..+..+|+.|+..+..|..+-..+..+|..+..
T Consensus 14 ~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~ 63 (143)
T PF12718_consen 14 DRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKE 63 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777777766666666666666666555555433
No 165
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.23 E-value=16 Score=29.39 Aligned_cols=30 Identities=23% Similarity=0.123 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRD 180 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~ 180 (331)
++|.+||.++..=+.-...|+..++..+..
T Consensus 8 ~Ri~eLE~r~AfQE~tieeLn~~laEq~~~ 37 (72)
T COG2900 8 ARIIELEIRLAFQEQTIEELNDALAEQQLV 37 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777776666666666666554433
No 166
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=75.51 E-value=13 Score=31.19 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=11.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 173 QLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 173 qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
++..+++++..+..+|..|+.++..|
T Consensus 35 q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 35 QVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333344444455554444444
No 167
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=75.48 E-value=34 Score=29.93 Aligned_cols=57 Identities=19% Similarity=0.172 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 154 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNE 210 (331)
Q Consensus 154 eeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne 210 (331)
+.|-.....|+........++..|+.++...+.....-..+|+.|+..++.....++
T Consensus 23 e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~ 79 (160)
T PF13094_consen 23 EQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALERERE 79 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555666667777777777777777777777777665443333
No 168
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=75.41 E-value=5 Score=31.17 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020103 166 EATTLSAQLTLFQRDTTDLSTENTELKL 193 (331)
Q Consensus 166 ENs~L~~qlt~Lqr~~~~L~~EN~eLK~ 193 (331)
|...|+.+|..|..++..|..||..||.
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555566666666654
No 169
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=75.41 E-value=27 Score=33.85 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHH
Q 020103 159 KVQTLQTEATTLSAQLTLFQRDTT----DLSTENTELKL 193 (331)
Q Consensus 159 kVq~Lq~ENs~L~~qlt~Lqr~~~----~L~~EN~eLK~ 193 (331)
.+..|..||..|+.++..++.+.. .+..||..||.
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~ 105 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRE 105 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777665533322 25666666654
No 170
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=75.27 E-value=52 Score=32.38 Aligned_cols=6 Identities=50% Similarity=0.362 Sum_probs=2.2
Q ss_pred HHHHHH
Q 020103 192 KLRLQA 197 (331)
Q Consensus 192 K~RLqa 197 (331)
+.||..
T Consensus 234 ~~rl~~ 239 (269)
T PF05278_consen 234 KGRLGE 239 (269)
T ss_pred HHHHHH
Confidence 333333
No 171
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=75.26 E-value=62 Score=37.38 Aligned_cols=50 Identities=24% Similarity=0.378 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA 202 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~ 202 (331)
+.+|+.+++.+...+..-+..+..-+..+..|..|-.+|+..+...+++.
T Consensus 789 lkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l 838 (1174)
T KOG0933|consen 789 LKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQL 838 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444445555555555555444444443
No 172
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=75.23 E-value=23 Score=37.37 Aligned_cols=16 Identities=50% Similarity=0.640 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHh
Q 020103 208 LNEALKKEVERLKVAT 223 (331)
Q Consensus 208 lne~Lk~EVqrLk~at 223 (331)
.|+..++|++.||+++
T Consensus 303 e~e~~rkelE~lR~~L 318 (575)
T KOG4403|consen 303 ENETSRKELEQLRVAL 318 (575)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4444444555554444
No 173
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.97 E-value=28 Score=39.21 Aligned_cols=70 Identities=24% Similarity=0.314 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 020103 150 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEM 226 (331)
Q Consensus 150 kqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~atge~ 226 (331)
++|+++|...++.|...+..|-.++..+++....|..||.+|+..++..- ....-|++++.-||...|-+
T Consensus 649 ~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~-------s~hsql~~q~~~Lk~qLg~~ 718 (970)
T KOG0946|consen 649 EKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFI-------SEHSQLKDQLDLLKNQLGII 718 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhccc
Confidence 45667777777777777777777777777777777777777766555431 12233444555555555543
No 174
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=74.95 E-value=64 Score=29.05 Aligned_cols=55 Identities=16% Similarity=0.329 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 020103 160 VQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA--QLRDALNEALKKEVE 217 (331)
Q Consensus 160 Vq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~--qLrdalne~Lk~EVq 217 (331)
+..++.+...+..++..+++++..+. ..+|..+...+... -++..+.+.+...|.
T Consensus 165 ~~~~~~ei~~~~~~~~~~~~~~~~is---~~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~ 221 (236)
T PF09325_consen 165 VEQAENEIEEAERRVEQAKDEFEEIS---ENIKKELERFEKEKVKDFKSMLEEYAESQIE 221 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433332 23444444444332 334444444444443
No 175
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=74.64 E-value=29 Score=26.02 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=11.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 175 TLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 175 t~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
..|+..+..|..+|..|+.++..|
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~L 52 (64)
T PF00170_consen 29 EELEEKVEELESENEELKKELEQL 52 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555554444444
No 176
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=74.56 E-value=36 Score=36.31 Aligned_cols=15 Identities=47% Similarity=0.764 Sum_probs=10.7
Q ss_pred HHHHHH---HHHHHHHHH
Q 020103 208 LNEALK---KEVERLKVA 222 (331)
Q Consensus 208 lne~Lk---~EVqrLk~a 222 (331)
+|+-|. +||+.||.+
T Consensus 499 mNeqL~~Q~eeI~~LK~~ 516 (518)
T PF10212_consen 499 MNEQLAKQREEIQTLKLA 516 (518)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 666665 788888853
No 177
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=74.47 E-value=65 Score=37.17 Aligned_cols=51 Identities=20% Similarity=0.324 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQL-TLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~ql-t~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
.++..+...+..|+..+..+.++. ..++.+...+..+-..|+.+++.++.+
T Consensus 365 n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~ 416 (1074)
T KOG0250|consen 365 NSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQ 416 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444 344444444444444455555554443
No 178
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.44 E-value=40 Score=33.10 Aligned_cols=56 Identities=20% Similarity=0.353 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 146 KERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 146 ReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
...+..-+.+++..++.++.+...|-.++..++.+...+..++.+++..|..++.+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~e 88 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKE 88 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567778888888888888888888888777777777777777777776555
No 179
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=73.93 E-value=13 Score=35.58 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020103 148 RKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKL 193 (331)
Q Consensus 148 RKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~ 193 (331)
|=++...|||.++..+..++..|..++.. |.++|-.|=.
T Consensus 90 RFR~Rn~ELE~elr~~~~~~~~L~~Ev~~-------L~~DN~kLYE 128 (248)
T PF08172_consen 90 RFRQRNAELEEELRKQQQTISSLRREVES-------LRADNVKLYE 128 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 33444577888777777766666666555 5555666533
No 180
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=73.85 E-value=61 Score=28.29 Aligned_cols=79 Identities=22% Similarity=0.294 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q 020103 139 RQSAARSKERKARYISELE-------RKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ--AQLRDALN 209 (331)
Q Consensus 139 RESArRSReRKkqyleeLE-------~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq--~qLrdaln 209 (331)
-+.|...-.+|+..++.|+ .+|..|+.+...+..++..+..++..+ +..++..+..++.. .-++..+.
T Consensus 119 ~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i---~~~~~~El~~f~~~~~~dlk~~l~ 195 (218)
T cd07596 119 LQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI---SERLKEELKRFHEERARDLKAALK 195 (218)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443 244444444444444444444433333 33444445554442 24455555
Q ss_pred HHHHHHHHHHH
Q 020103 210 EALKKEVERLK 220 (331)
Q Consensus 210 e~Lk~EVqrLk 220 (331)
..+...+..-+
T Consensus 196 ~~~~~qi~~~~ 206 (218)
T cd07596 196 EFARLQVQYAE 206 (218)
T ss_pred HHHHHHHHHHH
Confidence 55555544433
No 181
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=73.70 E-value=35 Score=26.27 Aligned_cols=29 Identities=31% Similarity=0.503 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDT 181 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~ 181 (331)
|++|...|+.|......|+..+..++.+.
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v 33 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADV 33 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555444443
No 182
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=73.31 E-value=36 Score=30.48 Aligned_cols=16 Identities=25% Similarity=0.517 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHh
Q 020103 208 LNEALKKEVERLKVAT 223 (331)
Q Consensus 208 lne~Lk~EVqrLk~at 223 (331)
++..+..||..||...
T Consensus 132 ~~~ki~~ei~~lr~~i 147 (177)
T PF07798_consen 132 LNNKIDTEIANLRTEI 147 (177)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445556666666543
No 183
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=73.28 E-value=48 Score=26.85 Aligned_cols=69 Identities=14% Similarity=0.338 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA-QLRDALNEALKKEVERLKVAT 223 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~-qLrdalne~Lk~EVqrLk~at 223 (331)
..++.+-.+...+..+.+.+..+-..++.++..-..|...++..+-.||++. .++ +.-.+||.+||.-+
T Consensus 4 elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK----~~YEeEI~rLr~eL 73 (79)
T PF08581_consen 4 ELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMK----QQYEEEIARLRREL 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 4566677778888888888888888888888888889999999999998875 444 44568899998754
No 184
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=73.14 E-value=23 Score=36.20 Aligned_cols=51 Identities=24% Similarity=0.275 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020103 145 SKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 195 (331)
Q Consensus 145 SReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RL 195 (331)
-=.|-+.++..||.-+.+++.||..|..++..+.+++.+.+.|+.+|...|
T Consensus 121 vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrEL 171 (401)
T PF06785_consen 121 VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNREL 171 (401)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHH
Confidence 335667778889999999999999999999999999988888877774444
No 185
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=73.08 E-value=9.3 Score=39.35 Aligned_cols=75 Identities=25% Similarity=0.275 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 139 RQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKK 214 (331)
Q Consensus 139 RESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~ 214 (331)
-++|+--|+|-.+--...|..+..+..|...|++++.........|..|+..||.-+..+|...+.. .-|+.|+.
T Consensus 226 eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~-~pNeqLk~ 300 (561)
T KOG1103|consen 226 EEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHL-RPNEQLKG 300 (561)
T ss_pred hHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc-CccccccC
Confidence 4677888888888888888889999999999999999888888889999999988888777665432 23454443
No 186
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=72.83 E-value=38 Score=31.14 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA 202 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~ 202 (331)
+++=..+...|...|+-|..++......+..|..++..|...+..+..+.
T Consensus 69 LeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL 118 (182)
T PF15035_consen 69 LEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDEL 118 (182)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555566666666666666666666666666655555543333
No 187
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.78 E-value=27 Score=33.92 Aligned_cols=32 Identities=16% Similarity=0.307 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCCCCCCC
Q 020103 209 NEALKKEVERLKVATGEMMTPTDTYNLGMQPI 240 (331)
Q Consensus 209 ne~Lk~EVqrLk~atge~~~~~~~f~~~~~q~ 240 (331)
..++..+++.||..+|..+..+.|.-...++.
T Consensus 91 ~~~ie~~l~~l~~~aG~v~V~G~Gl~ITi~d~ 122 (247)
T COG3879 91 DAALEDRLEKLRMLAGSVPVTGPGLVITIDDP 122 (247)
T ss_pred HHHHHHHHHHHHHHhccCCCcCCcEEEEecCC
Confidence 34455578899999999887777666666553
No 188
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=72.74 E-value=20 Score=43.14 Aligned_cols=77 Identities=31% Similarity=0.331 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 020103 145 SKERKARYISELERKV-------QTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ-AQLRDALNEALKKEV 216 (331)
Q Consensus 145 SReRKkqyleeLE~kV-------q~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq-~qLrdalne~Lk~EV 216 (331)
.+.+.-..+.+|..+| .-|+.++.+|..+++........|..||...|+|-+.|..+ ...--.-.+.|+.||
T Consensus 1237 e~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei 1316 (1822)
T KOG4674|consen 1237 ENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEI 1316 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 3444444444544444 44555666667777777777777777888888888887666 233233444455555
Q ss_pred HHHHH
Q 020103 217 ERLKV 221 (331)
Q Consensus 217 qrLk~ 221 (331)
.+|+.
T Consensus 1317 ~~Lk~ 1321 (1822)
T KOG4674|consen 1317 SRLKE 1321 (1822)
T ss_pred HHHHH
Confidence 55543
No 189
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=72.74 E-value=24 Score=27.36 Aligned_cols=39 Identities=18% Similarity=0.375 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 166 EATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQL 204 (331)
Q Consensus 166 ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qL 204 (331)
....+..++..++++...+..||..|+.++..+.....+
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rI 63 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHERI 63 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 344555566666666666777777777777766554443
No 190
>PRK02224 chromosome segregation protein; Provisional
Probab=72.52 E-value=93 Score=33.90 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 020103 159 KVQTLQTEATTLSAQL 174 (331)
Q Consensus 159 kVq~Lq~ENs~L~~ql 174 (331)
++..|+.+...|...+
T Consensus 538 ~~~~l~~e~~~l~~~~ 553 (880)
T PRK02224 538 RAEELRERAAELEAEA 553 (880)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 191
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=72.35 E-value=44 Score=40.76 Aligned_cols=65 Identities=26% Similarity=0.371 Sum_probs=48.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 137 ANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 137 aNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
.-.+.++++++-=...+...|+++..|++|+..|...+..+.+....+..|..++..++..+..+
T Consensus 1646 ~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~ 1710 (1930)
T KOG0161|consen 1646 RELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQ 1710 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 35667777777777777888888888888888888877777777777777777777777665433
No 192
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=71.99 E-value=84 Score=29.09 Aligned_cols=56 Identities=18% Similarity=0.304 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 020103 145 SKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQ 200 (331)
Q Consensus 145 SReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEq 200 (331)
.-.+-+.-+..+..++..++.+...|.-+...|..++..+..|..+|..+....=+
T Consensus 80 ~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~ 135 (201)
T PF13851_consen 80 NYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQ 135 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666666666666666666666666666666666666655544333
No 193
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=71.94 E-value=62 Score=27.69 Aligned_cols=15 Identities=33% Similarity=0.563 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 020103 184 LSTENTELKLRLQAM 198 (331)
Q Consensus 184 L~~EN~eLK~RLqaL 198 (331)
|..|..+++.|+..|
T Consensus 103 le~e~~~~~~r~~dL 117 (132)
T PF07926_consen 103 LEKELSELEQRIEDL 117 (132)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444444
No 194
>PLN02678 seryl-tRNA synthetase
Probab=71.92 E-value=89 Score=32.60 Aligned_cols=89 Identities=19% Similarity=0.269 Sum_probs=41.1
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHH
Q 020103 128 DPKRAKRILANRQSAARSKERKARYISEL-------ERKVQTLQTEATTLSAQLTLFQR---DTTDLSTENTELKLRLQA 197 (331)
Q Consensus 128 D~KR~KRiLaNRESArRSReRKkqyleeL-------E~kVq~Lq~ENs~L~~qlt~Lqr---~~~~L~~EN~eLK~RLqa 197 (331)
++..+++.+++|-.. .+ -...+.+| ..++..|+.+.+.++.++..+.. ....|..+-++||.++..
T Consensus 14 ~~~~v~~~l~~R~~~-~~---~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~ 89 (448)
T PLN02678 14 DPELIRESQRRRFAS-VE---LVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITE 89 (448)
T ss_pred CHHHHHHHHHhhCCC-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Confidence 455666666666421 00 12333333 44455555555555555543221 122333444445554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 020103 198 MEQQAQLRDALNEALKKEVERLKVATGEMM 227 (331)
Q Consensus 198 LEqq~qLrdalne~Lk~EVqrLk~atge~~ 227 (331)
++. ....+++++..+-..++-++
T Consensus 90 le~-------~~~~~~~~l~~~~~~iPNi~ 112 (448)
T PLN02678 90 KEA-------EVQEAKAALDAKLKTIGNLV 112 (448)
T ss_pred HHH-------HHHHHHHHHHHHHHhCCCCC
Confidence 433 33445555555555555554
No 195
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=71.92 E-value=44 Score=37.89 Aligned_cols=45 Identities=20% Similarity=0.339 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 157 ERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 157 E~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
.+-|..|+.....+..|+..||..|..++.|...|..-++.++.+
T Consensus 91 Rrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d 135 (1265)
T KOG0976|consen 91 RRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDD 135 (1265)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555555555555555555554444444333
No 196
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=71.43 E-value=29 Score=34.65 Aligned_cols=46 Identities=22% Similarity=0.320 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQ 196 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLq 196 (331)
..|.+|+.+++.+..||..|...+...+.....|.+|..+|+.+-.
T Consensus 241 sqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~ 286 (306)
T PF04849_consen 241 SQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYA 286 (306)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777777666777777777766543
No 197
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=71.31 E-value=57 Score=35.08 Aligned_cols=52 Identities=15% Similarity=0.249 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 147 ERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 147 eRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
+++.+-+..++.+...+.+....+...+.....++.....||..|..+|..+
T Consensus 194 ~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~ 245 (596)
T KOG4360|consen 194 EKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDL 245 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555455554444444444444444444444444444444444444433
No 198
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=70.94 E-value=47 Score=32.03 Aligned_cols=53 Identities=13% Similarity=0.111 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020103 139 RQSAARSKERKARYIS----ELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTEL 191 (331)
Q Consensus 139 RESArRSReRKkqyle----eLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eL 191 (331)
=+|+-..-+||.-+.+ .++.+++.|+.++..|..+++.++.++..-..-|.++
T Consensus 169 yeSsvAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~ 225 (259)
T KOG4001|consen 169 YESSVAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEE 225 (259)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3566777788876654 5788888999999999888888887776666555554
No 199
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=70.72 E-value=1e+02 Score=30.99 Aligned_cols=62 Identities=19% Similarity=0.249 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 140 QSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 140 ESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
++++|-....+..+.++|...+.-+...+....+-..++.....|..||--|+++|...-..
T Consensus 182 E~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K 243 (305)
T PF14915_consen 182 ESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNK 243 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666677777766666666666666666666666666666776666666554333
No 200
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=70.69 E-value=68 Score=28.64 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSA---QLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALK 213 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~---qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk 213 (331)
+..|+.++.....+...|.. -+..|+.+...|..+|...+...++--.+.++..++..+|.
T Consensus 29 ~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ai~~al~ 92 (155)
T PF06810_consen 29 RDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKDSAIKSALK 92 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444 33445555555555665333333332223333344444444
No 201
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=70.52 E-value=32 Score=27.58 Aligned_cols=54 Identities=26% Similarity=0.271 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HHH---HHHHHHHHHHHHHHHhc
Q 020103 171 SAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQL----RDA---LNEALKKEVERLKVATG 224 (331)
Q Consensus 171 ~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qL----rda---lne~Lk~EVqrLk~atg 224 (331)
-.-+..+|.+.+.++-|+-+|+++|...+++.-- .|| ..-.|.+|...+|.+..
T Consensus 7 P~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~ 67 (70)
T PF08606_consen 7 PSLLSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALA 67 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHH
Confidence 3446778899999999999999999888777411 111 22334456666665543
No 202
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=70.52 E-value=58 Score=36.13 Aligned_cols=63 Identities=24% Similarity=0.374 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 159 KVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKV 221 (331)
Q Consensus 159 kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~ 221 (331)
++..|+.....|..++.........|..+|..||.++.+-..+...-+.....|+.|++.++.
T Consensus 588 q~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk 650 (786)
T PF05483_consen 588 QMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKK 650 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555566666665555566666667766666655444433333444444444444443
No 203
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=70.42 E-value=75 Score=31.90 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=12.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHH
Q 020103 176 LFQRDTTDLSTENTELKLRLQ 196 (331)
Q Consensus 176 ~Lqr~~~~L~~EN~eLK~RLq 196 (331)
.|.++...|.+|++.|..+|.
T Consensus 182 ~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 182 RLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 344555666666666665554
No 204
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=70.23 E-value=26 Score=32.62 Aligned_cols=29 Identities=21% Similarity=0.434 Sum_probs=14.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 173 QLTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 173 qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
++..|+++...+...|-++..-+..|+++
T Consensus 176 ~L~~Le~~W~~~v~kn~eie~a~~~Le~e 204 (221)
T PF05700_consen 176 ELRYLEQRWKELVSKNLEIEVACEELEQE 204 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554444444433
No 205
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=70.16 E-value=48 Score=35.04 Aligned_cols=14 Identities=14% Similarity=0.382 Sum_probs=8.1
Q ss_pred HHHHHHHHHhccCC
Q 020103 214 KEVERLKVATGEMM 227 (331)
Q Consensus 214 ~EVqrLk~atge~~ 227 (331)
+.|+.|...+..+|
T Consensus 435 ~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 435 EKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHhHh
Confidence 55666666555554
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=70.15 E-value=31 Score=32.97 Aligned_cols=44 Identities=14% Similarity=0.302 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 195 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RL 195 (331)
-+.+|..++..|+.|+..|+.+++.++.+...+....++|-..|
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dl 98 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQI 98 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888888888877776666666555554443
No 207
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=70.14 E-value=1.2e+02 Score=35.39 Aligned_cols=11 Identities=18% Similarity=0.241 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 020103 146 KERKARYISEL 156 (331)
Q Consensus 146 ReRKkqyleeL 156 (331)
+.+++..|.+|
T Consensus 852 ~e~~~~eI~~L 862 (1311)
T TIGR00606 852 IQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 208
>PRK02119 hypothetical protein; Provisional
Probab=70.13 E-value=43 Score=26.48 Aligned_cols=28 Identities=14% Similarity=0.219 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRD 180 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~ 180 (331)
+..+|.++..|+...+-....+..|...
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~ 31 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQA 31 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888777776666666655443
No 209
>PRK04406 hypothetical protein; Provisional
Probab=70.09 E-value=46 Score=26.52 Aligned_cols=30 Identities=13% Similarity=0.281 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDTT 182 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~ 182 (331)
++.||.++..|+...+-+...|..|.+...
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~ 35 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALS 35 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888888888877777666666654433
No 210
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=69.77 E-value=93 Score=28.73 Aligned_cols=38 Identities=13% Similarity=0.244 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 143 ARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRD 180 (331)
Q Consensus 143 rRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~ 180 (331)
+.-..+++..+..|..+++.++.++.....++..++..
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~ 99 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRES 99 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555555555555555444433
No 211
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=69.47 E-value=24 Score=32.27 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=12.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 172 AQLTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 172 ~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
.+...|+.+...|..+|..|...++.+++.
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~ 133 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLRQR 133 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444333
No 212
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=69.42 E-value=96 Score=28.75 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHh
Q 020103 208 LNEALKKEVERLKVAT 223 (331)
Q Consensus 208 lne~Lk~EVqrLk~at 223 (331)
.+..|..||++|...+
T Consensus 172 ~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 172 EVKSLQEEIQRLNQKL 187 (194)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566777787776654
No 213
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=69.31 E-value=19 Score=27.17 Aligned_cols=29 Identities=28% Similarity=0.526 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 170 LSAQLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 170 L~~qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
+..++..++.+...+..+|..|+.+++.+
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444455555555555544
No 214
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.28 E-value=1.3e+02 Score=30.92 Aligned_cols=18 Identities=11% Similarity=0.241 Sum_probs=9.7
Q ss_pred cccccccccccCCCCCCC
Q 020103 56 DLFCSYMDMDKIGSKPTG 73 (331)
Q Consensus 56 d~~~~~~d~~~~~s~~~~ 73 (331)
+++..|-+.-..-|.+.+
T Consensus 130 ~l~a~f~~~pP~ys~~~~ 147 (365)
T KOG2391|consen 130 ELIAAFSEDPPVYSRSLP 147 (365)
T ss_pred HHHHHhcCCCccccCCCC
Confidence 355666666666554333
No 215
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=69.27 E-value=1.2e+02 Score=29.87 Aligned_cols=41 Identities=24% Similarity=0.341 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 139 RQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQR 179 (331)
Q Consensus 139 RESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr 179 (331)
|+-|.+-+..=+..+++|.+|-....-..+-|+++++.|-+
T Consensus 46 ~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~ 86 (277)
T PF15030_consen 46 RDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQ 86 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHH
Confidence 33333334333444444444443333334444444444433
No 216
>PF15294 Leu_zip: Leucine zipper
Probab=69.16 E-value=22 Score=34.99 Aligned_cols=52 Identities=27% Similarity=0.411 Sum_probs=41.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 020103 175 TLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEM 226 (331)
Q Consensus 175 t~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~atge~ 226 (331)
.+|......|..||..||.||..++.++-..--....|...+..|+...|..
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~ 179 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQ 179 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4477888999999999999999999998655446677777777887755543
No 217
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=69.00 E-value=23 Score=26.71 Aligned_cols=30 Identities=20% Similarity=0.422 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 148 RKARYISELERKVQTLQTEATTLSAQLTLF 177 (331)
Q Consensus 148 RKkqyleeLE~kVq~Lq~ENs~L~~qlt~L 177 (331)
++.+.+.+|+.+++.++.+|..|..++..|
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556677777777777777776666655
No 218
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=68.87 E-value=1.3e+02 Score=29.93 Aligned_cols=14 Identities=36% Similarity=0.546 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHhc
Q 020103 211 ALKKEVERLKVATG 224 (331)
Q Consensus 211 ~Lk~EVqrLk~atg 224 (331)
.|++.+..|...+|
T Consensus 275 ~Lk~~~~~Le~l~g 288 (312)
T smart00787 275 KLKEQLKLLQSLTG 288 (312)
T ss_pred HHHHHHHHHHHHhC
Confidence 34444444444444
No 219
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=68.60 E-value=26 Score=30.42 Aligned_cols=39 Identities=31% Similarity=0.386 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020103 155 ELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKL 193 (331)
Q Consensus 155 eLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~ 193 (331)
++=.+|..|+.....|.+++..++++...|..||..|+.
T Consensus 5 eiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~l 43 (114)
T COG4467 5 EIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRL 43 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 455678889999999999999999999999999999944
No 220
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=68.56 E-value=1.3e+02 Score=30.92 Aligned_cols=69 Identities=23% Similarity=0.362 Sum_probs=44.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHH
Q 020103 131 RAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQ--------------RDTTDLSTENTELKLRLQ 196 (331)
Q Consensus 131 R~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lq--------------r~~~~L~~EN~eLK~RLq 196 (331)
|+|.+.-|-+--+.-|+- +++-..+.++|+..|.+|..++..++ .-...+..||..|+.+|+
T Consensus 76 kirk~~e~~eglr~i~es----~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~ 151 (401)
T PF06785_consen 76 KIRKITEKDEGLRKIRES----VEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLD 151 (401)
T ss_pred HHHHHHhccHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHH
Confidence 566666666665555543 33344455667777777766665443 334556678999988888
Q ss_pred HHHHHHH
Q 020103 197 AMEQQAQ 203 (331)
Q Consensus 197 aLEqq~q 203 (331)
++.+++.
T Consensus 152 ~l~~e~~ 158 (401)
T PF06785_consen 152 ALQQECG 158 (401)
T ss_pred HHHHHHh
Confidence 8887763
No 221
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=68.20 E-value=60 Score=31.84 Aligned_cols=6 Identities=33% Similarity=0.352 Sum_probs=4.0
Q ss_pred CCCCcc
Q 020103 51 GGSEDD 56 (331)
Q Consensus 51 ~~~~dd 56 (331)
+++|+|
T Consensus 43 i~tE~d 48 (267)
T PF10234_consen 43 IDTEQD 48 (267)
T ss_pred CCcHHH
Confidence 667776
No 222
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=68.05 E-value=1.4e+02 Score=34.60 Aligned_cols=27 Identities=19% Similarity=0.436 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 154 SELERKVQTLQTEATTLSAQLTLFQRD 180 (331)
Q Consensus 154 eeLE~kVq~Lq~ENs~L~~qlt~Lqr~ 180 (331)
+++|..++....+...+..+++.++..
T Consensus 624 ~~~e~~l~~~~~~~~~~~~~~~~~~~~ 650 (1201)
T PF12128_consen 624 EELEKQLKQINKKIEELKREITQAEQE 650 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443333
No 223
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=68.04 E-value=87 Score=32.43 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=7.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHH
Q 020103 175 TLFQRDTTDLSTENTELKLRL 195 (331)
Q Consensus 175 t~Lqr~~~~L~~EN~eLK~RL 195 (331)
..+..++..+..+..+|..++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~ 154 (525)
T TIGR02231 134 DFNGSEIERLLTEDREAERRI 154 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 224
>PHA02562 46 endonuclease subunit; Provisional
Probab=67.69 E-value=1.2e+02 Score=31.10 Aligned_cols=41 Identities=10% Similarity=0.144 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 161 QTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 161 q~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
..|+.+..+|..+...+..+...|..+-.+++..+..++.+
T Consensus 361 ~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke 401 (562)
T PHA02562 361 KKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE 401 (562)
T ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333444444444444333
No 225
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=67.69 E-value=93 Score=33.98 Aligned_cols=28 Identities=29% Similarity=0.488 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020103 154 SELERKVQTLQTEATTLSAQLTLFQRDT 181 (331)
Q Consensus 154 eeLE~kVq~Lq~ENs~L~~qlt~Lqr~~ 181 (331)
.+|+.+|..|+.++..|..+|..+.+++
T Consensus 82 ~~L~~everLraei~~l~~~I~~~e~e~ 109 (632)
T PF14817_consen 82 RELEKEVERLRAEIQELDKEIESREREV 109 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555444443
No 226
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=67.66 E-value=52 Score=29.51 Aligned_cols=10 Identities=60% Similarity=0.564 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 020103 209 NEALKKEVER 218 (331)
Q Consensus 209 ne~Lk~EVqr 218 (331)
.++|++.++.
T Consensus 177 ~~~LkkQ~~~ 186 (192)
T PF05529_consen 177 IEALKKQSEG 186 (192)
T ss_pred HHHHHHHHHH
Confidence 3344443333
No 227
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=67.45 E-value=9.9 Score=31.27 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 148 RKARYISELERKVQTLQTEATTLSAQLTLFQ 178 (331)
Q Consensus 148 RKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lq 178 (331)
-|+.+++.|+.+++.++.+|..|..+|..++
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4577888899999998888888888877654
No 228
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=67.36 E-value=15 Score=38.42 Aligned_cols=66 Identities=23% Similarity=0.322 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 020103 154 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLR---DALNEALKKEVERLKV 221 (331)
Q Consensus 154 eeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLr---dalne~Lk~EVqrLk~ 221 (331)
+.|..+|..|+.+|..|..++..+.-.|..+..||+-| ++...+-|++-- +.....|-++|+.|..
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l--~~Asv~IQaraeqeeEfisntLlkkiqal~k 114 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPL--LLASVEIQARAEQEEEFISNTLLKKIQALFK 114 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchh--hhhhhHHhhccchHHHHHHHHHHHHHHHhhc
Confidence 44566677888888888888888888888888888888 445555554322 3333355567777754
No 229
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=66.84 E-value=31 Score=34.27 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQ 200 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEq 200 (331)
.|+=.||.+.+.+..|..+|..|+..|+.++..+.+.-++.|..|+.|..
T Consensus 64 ~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglre 113 (389)
T PF06216_consen 64 DYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLRE 113 (389)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45556666666777777777777776666666666555555555555543
No 230
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=66.38 E-value=70 Score=32.32 Aligned_cols=85 Identities=18% Similarity=0.262 Sum_probs=46.9
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020103 129 PKRAKRILANRQSAARSKERKARYISELERKVQTLQTEA-----------TTLSAQLTLFQRDTTDLSTENTELKLRLQA 197 (331)
Q Consensus 129 ~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~EN-----------s~L~~qlt~Lqr~~~~L~~EN~eLK~RLqa 197 (331)
.++.|++|++|...-..=+||...+.-=+..+++|..-- .....++.+|++++..|..+-.++..+|+.
T Consensus 121 ~~e~r~~lk~RI~rSEAFKRKllE~kYD~~mL~qLr~g~~~~~~~~~~~~~~~~D~v~LLqkk~~~l~~~l~~~~~eL~~ 200 (323)
T PF08537_consen 121 GREERRLLKDRILRSEAFKRKLLEKKYDKRMLEQLRRGRSKNRHNRPRNPSSNSDRVILLQKKIDELEERLNDLEKELEI 200 (323)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456668999999887777777554443344555554311 112356666666666666555555555555
Q ss_pred HHHHHHHHHHHHHHHH
Q 020103 198 MEQQAQLRDALNEALK 213 (331)
Q Consensus 198 LEqq~qLrdalne~Lk 213 (331)
+........-.|..|+
T Consensus 201 ~~k~L~faqekn~Llq 216 (323)
T PF08537_consen 201 TKKDLKFAQEKNALLQ 216 (323)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4333333333344433
No 231
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=66.36 E-value=63 Score=25.51 Aligned_cols=46 Identities=20% Similarity=0.312 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQA 197 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqa 197 (331)
.|..|-.+-+.|....-.+...|..|+.....+..+...|+.++..
T Consensus 13 ~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~ 58 (74)
T PF12329_consen 13 QIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEE 58 (74)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333433333333333333334444444444444444444433333
No 232
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=66.26 E-value=63 Score=28.07 Aligned_cols=66 Identities=24% Similarity=0.272 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGE 225 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~atge 225 (331)
+.++..++..|+........++..++ ..+.+|..|+=.+-....+-.-..-.|..|.+.|+.....
T Consensus 53 l~~i~~~l~~L~~~~~~~~~rl~~~r-------~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~ 118 (141)
T PF13874_consen 53 LKEINDKLEELQKHDLETSARLEEAR-------RRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEA 118 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 44455555555444444444444443 3444444443222222222223334454455555444433
No 233
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=66.11 E-value=52 Score=30.16 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020103 143 ARSKERKARYISELERKVQTLQ 164 (331)
Q Consensus 143 rRSReRKkqyleeLE~kVq~Lq 164 (331)
...-++....+.+|+.++..+.
T Consensus 75 ~~~~~~~~~~i~~l~~~i~~~~ 96 (188)
T PF03962_consen 75 QKEIEELEKKIEELEEKIEEAK 96 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444455555554443
No 234
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.53 E-value=1.2e+02 Score=33.22 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHH
Q 020103 159 KVQTLQTEATTLSAQLTLFQ---RDTTDLSTENTELKLRLQAMEQQA 202 (331)
Q Consensus 159 kVq~Lq~ENs~L~~qlt~Lq---r~~~~L~~EN~eLK~RLqaLEqq~ 202 (331)
....|+.||-.|..++..|+ -++.+|..|++.|...+..|..+.
T Consensus 171 eYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ 217 (772)
T KOG0999|consen 171 EYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQL 217 (772)
T ss_pred HHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666665554 357788888888887777776664
No 235
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=65.52 E-value=26 Score=33.69 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQ 178 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lq 178 (331)
-+..|..+|+.|+++|.+|.+++..|+
T Consensus 108 ~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 108 TISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566666666666666666655543
No 236
>PRK04863 mukB cell division protein MukB; Provisional
Probab=65.11 E-value=1.9e+02 Score=34.75 Aligned_cols=59 Identities=24% Similarity=0.265 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 147 ERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLR 205 (331)
Q Consensus 147 eRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLr 205 (331)
...+..+.+++.++..++.+...|..++..++.....+..+...+...++.++.-..+.
T Consensus 372 eeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~ 430 (1486)
T PRK04863 372 EEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLC 430 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455555556666666666666666666666666666655555555555444443
No 237
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=65.08 E-value=1.5e+02 Score=29.41 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020103 154 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQA 197 (331)
Q Consensus 154 eeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqa 197 (331)
+.|+..+..|+.+...|..+++.+..-...|......|+..+..
T Consensus 147 ~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~ 190 (312)
T smart00787 147 EGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQ 190 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666555544444444444444433
No 238
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=64.91 E-value=1.9e+02 Score=30.48 Aligned_cols=40 Identities=33% Similarity=0.354 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 020103 183 DLSTENTELKLRLQAMEQQAQLR---DALNEALKKEVERLKVA 222 (331)
Q Consensus 183 ~L~~EN~eLK~RLqaLEqq~qLr---dalne~Lk~EVqrLk~a 222 (331)
.|..+-..|+.+-..+||+++-- .--.+.+.+|..++..+
T Consensus 183 Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa 225 (499)
T COG4372 183 QLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAA 225 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556656666665321 11234445555555433
No 239
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=64.84 E-value=1.1e+02 Score=27.60 Aligned_cols=87 Identities=20% Similarity=0.249 Sum_probs=51.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 132 AKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEA 211 (331)
Q Consensus 132 ~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~ 211 (331)
.-|++.-=..+-.-|.++..+++.++..+...+.....|...-..-..+...+..|-.+++.++..++.... ...+.
T Consensus 116 y~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~---~is~~ 192 (236)
T PF09325_consen 116 YLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFE---EISEN 192 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 344444444555566666777777777776666666666555333344555566666666666665554432 34567
Q ss_pred HHHHHHHHHH
Q 020103 212 LKKEVERLKV 221 (331)
Q Consensus 212 Lk~EVqrLk~ 221 (331)
++.|+.|...
T Consensus 193 ~k~E~~rf~~ 202 (236)
T PF09325_consen 193 IKKELERFEK 202 (236)
T ss_pred HHHHHHHHHH
Confidence 7788877754
No 240
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=64.50 E-value=1.5e+02 Score=31.91 Aligned_cols=49 Identities=16% Similarity=0.130 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
|.+.|.+|..|.........++..+.........+-..++..++.+|.+
T Consensus 25 l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~q 73 (701)
T PF09763_consen 25 LLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQ 73 (701)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444444444444444444444433333333444444444444433
No 241
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.38 E-value=90 Score=30.68 Aligned_cols=48 Identities=8% Similarity=0.341 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 154 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 154 eeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
.+++.+|+.|..+...+..++..++.++..+..+-..|+..|..++..
T Consensus 48 ~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~ 95 (265)
T COG3883 48 KNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKEN 95 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555666666666655555443
No 242
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=64.25 E-value=1.4e+02 Score=34.48 Aligned_cols=64 Identities=23% Similarity=0.387 Sum_probs=37.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020103 132 AKRILANRQSAARSKERKARYISELERKV-----QTLQT-----EATTLSAQLTLFQRDTTDLSTENTELKLRL 195 (331)
Q Consensus 132 ~KRiLaNRESArRSReRKkqyleeLE~kV-----q~Lq~-----ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RL 195 (331)
+|++.+-|..|+..-+.|-+|..+|-.-. .+|.. ...+|..++..++++++.|+.+-..||..+
T Consensus 282 qrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEm 355 (1243)
T KOG0971|consen 282 QRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEM 355 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677778888888888888777764322 22222 223355555555555555555555555544
No 243
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=64.19 E-value=15 Score=31.97 Aligned_cols=29 Identities=28% Similarity=0.365 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020103 165 TEATTLSAQLTLFQRDTTDLSTENTELKL 193 (331)
Q Consensus 165 ~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~ 193 (331)
.|...|+.++..|..++..|+.||.-||.
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445566666666666677777777754
No 244
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=64.13 E-value=1.8e+02 Score=34.33 Aligned_cols=81 Identities=17% Similarity=0.309 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 140 QSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERL 219 (331)
Q Consensus 140 ESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrL 219 (331)
++...+..+++.-+.+|+.++..+..|....+..+..+......+...-..+++++..+.....-...-|++|. -+.||
T Consensus 531 ~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~-al~r~ 609 (1293)
T KOG0996|consen 531 LASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLD-ALMRL 609 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH-HHHHH
Confidence 34455566777777777777777777777777777777776666666667777777777665555555677765 35566
Q ss_pred HH
Q 020103 220 KV 221 (331)
Q Consensus 220 k~ 221 (331)
+.
T Consensus 610 ke 611 (1293)
T KOG0996|consen 610 KE 611 (1293)
T ss_pred HH
Confidence 65
No 245
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=63.55 E-value=2e+02 Score=32.18 Aligned_cols=67 Identities=22% Similarity=0.344 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERL 219 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrL 219 (331)
++.++.....++..+..|...+...+.++..|.+++..|+.+|..-..+.--+.+-++.+.+|..++
T Consensus 310 l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~ 376 (775)
T PF10174_consen 310 LETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRL 376 (775)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444455555555555666666666666666554444333333344444444433
No 246
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=63.50 E-value=1.4e+02 Score=28.65 Aligned_cols=26 Identities=12% Similarity=0.195 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 150 ARYISELERKVQTLQTEATTLSAQLT 175 (331)
Q Consensus 150 kqyleeLE~kVq~Lq~ENs~L~~qlt 175 (331)
++....|+.+...++.....|..++.
T Consensus 228 ~~~~~~le~~~~~~ee~~~~L~ekme 253 (297)
T PF02841_consen 228 KEQEQMLEQQERSYEEHIKQLKEKME 253 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555554443
No 247
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=63.48 E-value=95 Score=26.55 Aligned_cols=66 Identities=26% Similarity=0.359 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKV 221 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~ 221 (331)
|-.+|-..... -.....|+.++..++.....|..+....+..|...+..+.-+ -..|.+|+..++.
T Consensus 47 YE~El~~Ha~~-~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~q---k~~le~e~~~~~~ 112 (132)
T PF07926_consen 47 YERELVKHAED-IKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQ---KEQLEKELSELEQ 112 (132)
T ss_pred HHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHH
Confidence 44444433333 223344555555555555555555555555554444443222 2334445544443
No 248
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=63.29 E-value=90 Score=28.30 Aligned_cols=78 Identities=21% Similarity=0.301 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 143 ARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVA 222 (331)
Q Consensus 143 rRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~a 222 (331)
...++.-++.|..|..++...+.+...+...|..++.+ |....+.|+.....+..-..=..+..+.|+++++.++..
T Consensus 102 ~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~---l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~ 178 (184)
T PF05791_consen 102 QKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDK---LQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEE 178 (184)
T ss_dssp HT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGG
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 34455555667777777777777777777766666543 555566666655554333333334566677777776554
Q ss_pred h
Q 020103 223 T 223 (331)
Q Consensus 223 t 223 (331)
+
T Consensus 179 I 179 (184)
T PF05791_consen 179 I 179 (184)
T ss_dssp G
T ss_pred H
Confidence 3
No 249
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=63.22 E-value=1.9e+02 Score=33.48 Aligned_cols=52 Identities=19% Similarity=0.249 Sum_probs=29.3
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 129 PKRAKRILANRQSAARSKERKARYIS---ELERKVQTLQTEATTLSAQLTLFQRD 180 (331)
Q Consensus 129 ~KR~KRiLaNRESArRSReRKkqyle---eLE~kVq~Lq~ENs~L~~qlt~Lqr~ 180 (331)
.++++++-.+|.-..+.+..++.... .+..+...|+.+...+..++..+.++
T Consensus 784 ~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 838 (1201)
T PF12128_consen 784 EKELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQE 838 (1201)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 35566777778888888887776532 23334444444444444444444443
No 250
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=63.20 E-value=53 Score=25.44 Aligned_cols=25 Identities=12% Similarity=0.223 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 156 LERKVQTLQTEATTLSAQLTLFQRD 180 (331)
Q Consensus 156 LE~kVq~Lq~ENs~L~~qlt~Lqr~ 180 (331)
||.++..|+...+-+...+..|...
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~ 26 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDV 26 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777666666655555443
No 251
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=63.18 E-value=38 Score=34.62 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 020103 160 VQTLQTEATTLSAQLTLFQRDTTDL 184 (331)
Q Consensus 160 Vq~Lq~ENs~L~~qlt~Lqr~~~~L 184 (331)
...|+.||..|++++..|..+.+.|
T Consensus 34 ~~aLr~EN~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 34 NFALRMENHSLKKENNDLKIEVERL 58 (420)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555
No 252
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=63.06 E-value=27 Score=28.37 Aligned_cols=56 Identities=23% Similarity=0.326 Sum_probs=23.6
Q ss_pred cCChhHhhhhccCChHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 020103 115 AMDPDKLAELWTVDPKRAKRILANRQSAARSKERKAR----YISELERKVQTLQTEATTLSA 172 (331)
Q Consensus 115 ~~~~~~LaEla~~D~KR~KRiLaNRESArRSReRKkq----yleeLE~kVq~Lq~ENs~L~~ 172 (331)
-+..+.|..|...|...+-+.|. .+-.+-|.||.+ .+..|..++..|..+|..|..
T Consensus 37 ~~~GedL~~Ls~~eL~~LE~~Le--~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~ 96 (100)
T PF01486_consen 37 HLMGEDLESLSLKELQQLEQQLE--SALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQ 96 (100)
T ss_pred ccccccccccchHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455444334333333333 233444555544 333444444444444444433
No 253
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=63.06 E-value=68 Score=26.70 Aligned_cols=44 Identities=25% Similarity=0.342 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020103 148 RKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTEL 191 (331)
Q Consensus 148 RKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eL 191 (331)
=|+.|=...|.+|..|+.++..|..++..|+.+...-..|-.+|
T Consensus 39 LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 39 LKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37777788888888888888888888888887766655555554
No 254
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=62.98 E-value=1.2e+02 Score=27.72 Aligned_cols=92 Identities=23% Similarity=0.307 Sum_probs=56.9
Q ss_pred HHHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHH
Q 020103 130 KRAKRILANRQSAARSKE-----RKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLS----TENTELKLRLQAMEQ 200 (331)
Q Consensus 130 KR~KRiLaNRESArRSRe-----RKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~----~EN~eLK~RLqaLEq 200 (331)
.|.|+-++-+..|+.+|. |=...-++||.-+.=...|...++..|....++..-|. .--.++|.-|.++..
T Consensus 44 ErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nE 123 (159)
T PF04949_consen 44 ERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNE 123 (159)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677777777763 22334466777666667777777777777666655543 345677777888777
Q ss_pred HHHHHHHHHHHHH---HHHHHHHH
Q 020103 201 QAQLRDALNEALK---KEVERLKV 221 (331)
Q Consensus 201 q~qLrdalne~Lk---~EVqrLk~ 221 (331)
..+-+..|...|. .|-+++|.
T Consensus 124 knkeK~~Lv~~L~eLv~eSE~~rm 147 (159)
T PF04949_consen 124 KNKEKAQLVTRLMELVSESERLRM 147 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655555544443 34455544
No 255
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=62.96 E-value=71 Score=35.04 Aligned_cols=75 Identities=23% Similarity=0.272 Sum_probs=46.2
Q ss_pred hcCChhHhhhhccCChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020103 114 KAMDPDKLAELWTVDPKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKL 193 (331)
Q Consensus 114 k~~~~~~LaEla~~D~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~ 193 (331)
+-+.+--|..-.+.|.|-+--|.+| +|-.||..|..|+.-|+.++...++-...|...+++|..
T Consensus 301 rEVeNLilENsqLLetKNALNiVKN----------------DLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEE 364 (832)
T KOG2077|consen 301 REVENLILENSQLLETKNALNIVKN----------------DLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEE 364 (832)
T ss_pred HHHHHHHHhhHHHHhhhhHHHHHHH----------------HHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333345678888888876 566677777777777776666666666666666666666
Q ss_pred HHHHHHHHHHH
Q 020103 194 RLQAMEQQAQL 204 (331)
Q Consensus 194 RLqaLEqq~qL 204 (331)
.|..+.+++..
T Consensus 365 Elk~~k~ea~~ 375 (832)
T KOG2077|consen 365 ELKKAKAEAED 375 (832)
T ss_pred HHHHHHHHHHH
Confidence 66555555433
No 256
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=62.81 E-value=1.1e+02 Score=26.87 Aligned_cols=11 Identities=45% Similarity=0.435 Sum_probs=5.5
Q ss_pred HHHHHHhccCC
Q 020103 217 ERLKVATGEMM 227 (331)
Q Consensus 217 qrLk~atge~~ 227 (331)
.|||..-.+++
T Consensus 105 ~rLk~LG~eVS 115 (136)
T PF04871_consen 105 ERLKELGEEVS 115 (136)
T ss_pred HHHHHcCCCcc
Confidence 45665444443
No 257
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=62.74 E-value=55 Score=31.83 Aligned_cols=59 Identities=31% Similarity=0.225 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 020103 160 VQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEM 226 (331)
Q Consensus 160 Vq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~atge~ 226 (331)
+.........+...+.. +..+..||++||.++..+++... ..+.|++|-++||...+..
T Consensus 51 ~~~p~~~v~~~~~~~~~----~~~~~~en~~Lk~~l~~~~~~~~----~~~~l~~EN~~Lr~lL~~~ 109 (284)
T COG1792 51 VAAPFEFVDGVLEFLKS----LKDLALENEELKKELAELEQLLE----EVESLEEENKRLKELLDFK 109 (284)
T ss_pred HhhHHHHHHhHHHHHHH----hHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCc
Confidence 33333333344444443 44577889999888877765533 4477888888998887764
No 258
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=62.73 E-value=67 Score=28.17 Aligned_cols=38 Identities=18% Similarity=0.404 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 184 LSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKV 221 (331)
Q Consensus 184 L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~ 221 (331)
|..-.++|.+||+.+.....-..++.+..++||..++.
T Consensus 59 l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~ 96 (126)
T PF07889_consen 59 LSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVRE 96 (126)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 33444445555555444433333344444444444443
No 259
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=62.65 E-value=71 Score=24.80 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 020103 184 LSTENTELKLRLQAME 199 (331)
Q Consensus 184 L~~EN~eLK~RLqaLE 199 (331)
+...|-.+..+|+..+
T Consensus 23 vk~~n~~~e~kLqeaE 38 (61)
T PF08826_consen 23 VKSANLAFESKLQEAE 38 (61)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 260
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=62.63 E-value=43 Score=32.06 Aligned_cols=47 Identities=26% Similarity=0.251 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAME 199 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLE 199 (331)
+..||+.++.-......|..||..|+++...|.-++.++..+|+.|.
T Consensus 42 ~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~ 88 (263)
T PRK10803 42 VTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVV 88 (263)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44566665554444455666666666666666666666666665543
No 261
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=62.48 E-value=1.4e+02 Score=33.14 Aligned_cols=11 Identities=27% Similarity=0.434 Sum_probs=6.8
Q ss_pred cccCCCccccc
Q 020103 306 DINGRNSHLVK 316 (331)
Q Consensus 306 ~i~~~~~~~~~ 316 (331)
=|-|||++++|
T Consensus 727 IIHGkGtG~Lr 737 (771)
T TIGR01069 727 IIHGKGSGKLR 737 (771)
T ss_pred EEcCCChhHHH
Confidence 35677776544
No 262
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=62.47 E-value=1.8e+02 Score=30.50 Aligned_cols=66 Identities=8% Similarity=0.192 Sum_probs=47.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020103 137 ANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA 202 (331)
Q Consensus 137 aNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~ 202 (331)
+++...++-=+++...|.+-..+.+.|+.+...+..++..+..+......++.+++.+|..++...
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l 103 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARL 103 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 455666666666667777777777777777777777777777777777777777777777765553
No 263
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=62.06 E-value=1.6e+02 Score=29.79 Aligned_cols=54 Identities=13% Similarity=0.186 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHHHHHH-HHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTEN-----TELKLRLQAMEQQA-QLR 205 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN-----~eLK~RLqaLEqq~-qLr 205 (331)
-+.+|..++..|+.+|..|..++..+..++..+..+. .-++.-+..|...+ +||
T Consensus 138 ~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR 197 (342)
T PF06632_consen 138 ANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIR 197 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3445555555555555555555555555555555433 33444445555443 444
No 264
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=62.05 E-value=1.8e+02 Score=33.79 Aligned_cols=83 Identities=22% Similarity=0.333 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Q 020103 144 RSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ--------AQLRDALNEALKKE 215 (331)
Q Consensus 144 RSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq--------~qLrdalne~Lk~E 215 (331)
......+.-+++||......-.+...|...+....-+...+.+++.++|.++..+... .+|+ .+.+.++.+
T Consensus 411 e~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~-~~i~~~~~d 489 (1200)
T KOG0964|consen 411 EQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLR-SLIANLEED 489 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3344455555666666666666666666666666666677777777777776654322 1333 245555666
Q ss_pred HHHHHHHhccCC
Q 020103 216 VERLKVATGEMM 227 (331)
Q Consensus 216 VqrLk~atge~~ 227 (331)
|.+-...++.++
T Consensus 490 l~~~~~~L~~~~ 501 (1200)
T KOG0964|consen 490 LSRAEKNLRATM 501 (1200)
T ss_pred HHHHHHHHHHhc
Confidence 665555555544
No 265
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=62.02 E-value=73 Score=29.96 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020103 162 TLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 195 (331)
Q Consensus 162 ~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RL 195 (331)
.|..++..|.+++..|+..+..+.+|-++|..-|
T Consensus 83 ~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~L 116 (201)
T KOG4603|consen 83 VLDGKIVALTEKVQSLQQTCSYVEAEIKELSSAL 116 (201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444444444444444444444443333
No 266
>PRK14127 cell division protein GpsB; Provisional
Probab=61.98 E-value=61 Score=27.82 Aligned_cols=23 Identities=13% Similarity=0.294 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLT 175 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt 175 (331)
|+++-..+..|..|+..|..++.
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~ 54 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENA 54 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444433333333
No 267
>PF15058 Speriolin_N: Speriolin N terminus
Probab=61.97 E-value=16 Score=34.45 Aligned_cols=38 Identities=29% Similarity=0.338 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
.+.|-.+++.|-.||.+|++++. |..||.+||.-|..-
T Consensus 7 yeGlrhqierLv~ENeeLKKlVr--------LirEN~eLksaL~ea 44 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVR--------LIRENHELKSALGEA 44 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHH--------HHHHHHHHHHHHHHh
Confidence 35567778888888888888776 456888887764433
No 268
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=61.79 E-value=13 Score=32.53 Aligned_cols=28 Identities=32% Similarity=0.386 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 149 KARYISELERKVQTLQTEATTLSAQLTL 176 (331)
Q Consensus 149 KkqyleeLE~kVq~Lq~ENs~L~~qlt~ 176 (331)
|..-+++|..+++.|+.||..|..++..
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456899999999999999999998853
No 269
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=61.59 E-value=1.2e+02 Score=30.77 Aligned_cols=74 Identities=18% Similarity=0.224 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA-Q-------LRDALNEALKKEVERLKVA 222 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~-q-------Lrdalne~Lk~EVqrLk~a 222 (331)
+-.++|+.+.+.|+........+++.+.+-.......-..-|.|+..+.... + ......+.|++++.+-+..
T Consensus 4 eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~ 83 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQ 83 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhh
Confidence 4567888888888888877777666555443333333333333333332221 1 1223445566666555544
Q ss_pred hc
Q 020103 223 TG 224 (331)
Q Consensus 223 tg 224 (331)
..
T Consensus 84 l~ 85 (330)
T PF07851_consen 84 LF 85 (330)
T ss_pred HH
Confidence 43
No 270
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=61.47 E-value=1.1e+02 Score=27.42 Aligned_cols=14 Identities=29% Similarity=0.605 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 020103 187 ENTELKLRLQAMEQ 200 (331)
Q Consensus 187 EN~eLK~RLqaLEq 200 (331)
.|.+|+.+|..++.
T Consensus 52 d~eeLk~~i~~lq~ 65 (155)
T PF06810_consen 52 DNEELKKQIEELQA 65 (155)
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444433
No 271
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=61.41 E-value=26 Score=25.62 Aligned_cols=25 Identities=20% Similarity=0.469 Sum_probs=14.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Q 020103 175 TLFQRDTTDLSTENTELKLRLQAME 199 (331)
Q Consensus 175 t~Lqr~~~~L~~EN~eLK~RLqaLE 199 (331)
..++..+..|..+|..|+.++..|+
T Consensus 28 ~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 28 EELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455556666666666555554
No 272
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=61.30 E-value=1.4e+02 Score=33.12 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=18.0
Q ss_pred CChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 127 VDPKRAKRILANRQSAARSKERKARYISELERKVQTLQTE 166 (331)
Q Consensus 127 ~D~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~E 166 (331)
.+..+.-++|..-+.-++.=+.+++.++.+..+++.+..+
T Consensus 513 ~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~ 552 (782)
T PRK00409 513 EDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEE 552 (782)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554444444444444444444444433333
No 273
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=61.25 E-value=1.3e+02 Score=27.27 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 020103 161 QTLQTEATTLSAQLTLFQRDTTDLSTENTE 190 (331)
Q Consensus 161 q~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~e 190 (331)
..++.++..|..++..|+..+..|......
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344555555555555555554444433333
No 274
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=60.97 E-value=1.2e+02 Score=32.18 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 150 ARYISELERKVQTLQTEATTLSAQLTLFQR 179 (331)
Q Consensus 150 kqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr 179 (331)
++|++++-.++..|+.+.+.+.+....+.+
T Consensus 353 k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~ 382 (493)
T KOG0804|consen 353 KQYYELLITEADSLKQESSDLEAEKKIVER 382 (493)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 344444444444444444444433333333
No 275
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=60.81 E-value=26 Score=26.54 Aligned_cols=48 Identities=27% Similarity=0.367 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 148 RKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 148 RKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
||+..|.+||.+++.=+ |.-.+ .-.........|..||..|+.+|..+
T Consensus 1 kw~~Rl~ELe~klkaer-E~R~~--d~~~a~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 1 KWLLRLEELERKLKAER-EARSL--DRSAARKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred CHHHHHHHHHHHHHHhH-HhccC--CchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888776543 11111 11233445556666777776665543
No 276
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=60.64 E-value=1.8e+02 Score=32.22 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLF 177 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~L 177 (331)
.+.+|+.+.+.|+.....|..++..+
T Consensus 580 ~L~~l~e~~~~l~~~ae~LaeR~e~a 605 (717)
T PF10168_consen 580 ELQELQEERKSLRESAEKLAERYEEA 605 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 277
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=60.62 E-value=72 Score=31.42 Aligned_cols=63 Identities=19% Similarity=0.382 Sum_probs=35.2
Q ss_pred HHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 134 RILANRQSAAR-SKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 134 RiLaNRESArR-SReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
.-|+|||..-. +|.||+.-..++ ..|+...- -..+|..|++++..+++||-....+|..+..+
T Consensus 131 K~IR~~E~sl~p~R~~r~~l~d~I----~kLk~k~P-~s~kl~~LeqELvraEae~lvaEAqL~n~kR~ 194 (271)
T PF13805_consen 131 KSIRNREESLQPSRDRRRKLQDEI----AKLKYKDP-QSPKLVVLEQELVRAEAENLVAEAQLSNIKRQ 194 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-T-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHhHHHHHHH----HHHHhcCC-CChHHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Confidence 34677776544 455554433333 22322211 23456677777777777777777777666554
No 278
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=60.55 E-value=1.7e+02 Score=31.94 Aligned_cols=56 Identities=13% Similarity=0.262 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 020103 139 RQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLR 194 (331)
Q Consensus 139 RESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~R 194 (331)
|+.+.+-|..=++-|+.|..++..|..++..+..++..-.........+-..++.+
T Consensus 74 ~e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k 129 (632)
T PF14817_consen 74 RENEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHK 129 (632)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555566777777777777777777777766555555555555554444
No 279
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=60.37 E-value=1.1e+02 Score=27.41 Aligned_cols=14 Identities=21% Similarity=0.136 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 020103 183 DLSTENTELKLRLQ 196 (331)
Q Consensus 183 ~L~~EN~eLK~RLq 196 (331)
....|...||.+.+
T Consensus 172 ~~~~~~~~LkkQ~~ 185 (192)
T PF05529_consen 172 KKEKEIEALKKQSE 185 (192)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333334433333
No 280
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=60.35 E-value=86 Score=30.94 Aligned_cols=66 Identities=17% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 150 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKE 215 (331)
Q Consensus 150 kqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~E 215 (331)
+.-++.+-.++..|+.||..+..+..........+..|+..+...+..+..+..--..|-.+|..|
T Consensus 243 k~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~e 308 (309)
T PF09728_consen 243 KKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQAE 308 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
No 281
>PHA03155 hypothetical protein; Provisional
Probab=60.31 E-value=12 Score=32.67 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLT 175 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt 175 (331)
-+++|+.+++.|+.||..|..++.
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~ 32 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLL 32 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999998884
No 282
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=60.25 E-value=50 Score=26.43 Aligned_cols=42 Identities=17% Similarity=0.408 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 164 QTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLR 205 (331)
Q Consensus 164 q~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLr 205 (331)
..+...+..++..++++...|..||..|+..+..+....++.
T Consensus 34 ~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~rIe 75 (97)
T PF04999_consen 34 RHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSSPSRIE 75 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 344556667777778888888888888887777776554443
No 283
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=60.17 E-value=28 Score=30.68 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 020103 155 ELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELK 192 (331)
Q Consensus 155 eLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK 192 (331)
..|..++.|+.+...=-.++..|+++...+...|..|.
T Consensus 91 ~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Le 128 (131)
T PF04859_consen 91 TYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLE 128 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333444444444333444444444444444444443
No 284
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=60.07 E-value=87 Score=27.31 Aligned_cols=48 Identities=17% Similarity=0.339 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 154 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 154 eeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
..+|+.-..=+.|.+.|.++|+.|+-+..++..=|..|+.||.-||..
T Consensus 14 ~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~a 61 (134)
T PF08232_consen 14 HRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYA 61 (134)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777888888899988888888888888888888777654
No 285
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=59.91 E-value=1.4e+02 Score=27.39 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=23.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 134 RILANRQSAARSKERKARYISELERKVQTLQTEATTLS 171 (331)
Q Consensus 134 RiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~ 171 (331)
|++.-=..+-.-|.++..+++.++..+..++....+|.
T Consensus 98 r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~ 135 (216)
T cd07627 98 RSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLK 135 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44433344555666777777777777776666666654
No 286
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=59.39 E-value=17 Score=28.37 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020103 150 ARYISELERKVQTLQTEATTLSA 172 (331)
Q Consensus 150 kqyleeLE~kVq~Lq~ENs~L~~ 172 (331)
|..|.+|+.++..|+.||+-|+.
T Consensus 20 K~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 20 KEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566677777777777766654
No 287
>PRK12705 hypothetical protein; Provisional
Probab=59.07 E-value=2.5e+02 Score=29.95 Aligned_cols=10 Identities=30% Similarity=0.786 Sum_probs=5.4
Q ss_pred cccCCCCCCC
Q 020103 262 VQLPEFHPFQ 271 (331)
Q Consensus 262 ~~~~~~~~~~ 271 (331)
+.|+.|.|-.
T Consensus 241 V~ls~fdp~r 250 (508)
T PRK12705 241 VVISSFNPIR 250 (508)
T ss_pred hhhcccCccc
Confidence 4566666533
No 288
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=59.06 E-value=32 Score=28.44 Aligned_cols=37 Identities=30% Similarity=0.376 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHH----HH--HHHHHHHHHHHHHHHHHH
Q 020103 186 TENTELKLRLQAMEQQA----QL--RDALNEALKKEVERLKVA 222 (331)
Q Consensus 186 ~EN~eLK~RLqaLEqq~----qL--rdalne~Lk~EVqrLk~a 222 (331)
.||..|+..|+.|..+. .+ ....|-.|++|+.+|+.-
T Consensus 24 ~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f 66 (86)
T PF12711_consen 24 EENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSF 66 (86)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555554332 11 113566677777777654
No 289
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=58.91 E-value=1.5e+02 Score=28.00 Aligned_cols=51 Identities=22% Similarity=0.342 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA 202 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~ 202 (331)
.+..||.++..|..+...|..+.+........+...-.....+.+.+....
T Consensus 46 ~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i 96 (264)
T PF06008_consen 46 QLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFI 96 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666666666655555555555555555555554443
No 290
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=58.89 E-value=80 Score=34.09 Aligned_cols=52 Identities=23% Similarity=0.396 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 150 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 150 kqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
+..|++|+.++..+..+...|...+..+..+......++.+|...+...+..
T Consensus 334 ~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~ 385 (594)
T PF05667_consen 334 QEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKT 385 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777777777777777777777777777777777777766665544443
No 291
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=58.82 E-value=1.8e+02 Score=33.86 Aligned_cols=44 Identities=23% Similarity=0.156 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLR 194 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~R 194 (331)
..+++|...+..+..+...+..++.-+......+..+...++.+
T Consensus 888 ~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 (1311)
T TIGR00606 888 EQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISS 931 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444333
No 292
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=58.79 E-value=2.3e+02 Score=33.40 Aligned_cols=9 Identities=0% Similarity=-0.171 Sum_probs=4.1
Q ss_pred cccccccCC
Q 020103 24 QSEVQYRIP 32 (331)
Q Consensus 24 ~se~~~~~~ 32 (331)
+-.+-|.+.
T Consensus 85 y~~~e~~~~ 93 (1353)
T TIGR02680 85 YLWLEFGRV 93 (1353)
T ss_pred eEEEEeecc
Confidence 334445554
No 293
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=58.57 E-value=2.6e+02 Score=29.94 Aligned_cols=46 Identities=24% Similarity=0.289 Sum_probs=20.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 130 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLT 175 (331)
Q Consensus 130 KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt 175 (331)
.....+......+.+...+.+.-+..++.++..++.+...+..++.
T Consensus 421 e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 466 (650)
T TIGR03185 421 EQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLD 466 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444443
No 294
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=58.40 E-value=1.7e+02 Score=27.85 Aligned_cols=67 Identities=22% Similarity=0.359 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 155 ELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKV 221 (331)
Q Consensus 155 eLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~ 221 (331)
.|+.+...++.++..|..+..........|..+..++...+..|+....-++.....|+.++...+.
T Consensus 51 ~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 51 ELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555566666677777777777777777777777766654443
No 295
>PRK14160 heat shock protein GrpE; Provisional
Probab=58.34 E-value=1.1e+02 Score=29.09 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
-+..|+.++..|+.++..|..++..++.++..+.++...+|.|...=
T Consensus 55 ~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE 101 (211)
T PRK14160 55 KIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKE 101 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577777888888888888888888888888889888888887653
No 296
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=58.26 E-value=10 Score=27.57 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020103 163 LQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 195 (331)
Q Consensus 163 Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RL 195 (331)
|-..|+.|..++..++..+..|..||..|+.++
T Consensus 12 laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 12 LAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ------------------HHHHHHHHHHHHHHH
T ss_pred HHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 334456666666666666777777777776554
No 297
>PRK02793 phi X174 lysis protein; Provisional
Probab=58.19 E-value=90 Score=24.56 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 154 SELERKVQTLQTEATTLSAQLTLFQR 179 (331)
Q Consensus 154 eeLE~kVq~Lq~ENs~L~~qlt~Lqr 179 (331)
.++|.++..|+...+-....|..|..
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~ 29 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNV 29 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777777777766666665555544
No 298
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=58.01 E-value=12 Score=27.29 Aligned_cols=42 Identities=31% Similarity=0.313 Sum_probs=9.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 132 AKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQL 174 (331)
Q Consensus 132 ~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~ql 174 (331)
.|+...|++=|+..-..+. .+.+||.++..|..||-.|+.++
T Consensus 3 ~k~~~qn~~laK~Ns~l~~-ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 3 EKYSRQNRELAKRNSALSI-KIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------------------------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHhHHHHh-HHHHHHhHHHHHHHHHHHHHHHh
Confidence 3455556555554444333 35666777777776666666543
No 299
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=58.00 E-value=94 Score=24.72 Aligned_cols=50 Identities=22% Similarity=0.252 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA 202 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~ 202 (331)
+..||.--+.+...-.......+.|+..+.....+|..|+.++..|.+++
T Consensus 9 l~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv 58 (70)
T PF04899_consen 9 LSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQV 58 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555555555555555666666666666665553
No 300
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=57.87 E-value=55 Score=26.59 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 020103 203 QLRDALNEALKKEVERLKVAT 223 (331)
Q Consensus 203 qLrdalne~Lk~EVqrLk~at 223 (331)
++|....+.+..++..|+...
T Consensus 64 ~VR~rK~~~l~~~i~~l~~ke 84 (100)
T PF01486_consen 64 RVRSRKDQLLMEQIEELKKKE 84 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 667677777777777776543
No 301
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=57.86 E-value=1.4e+02 Score=28.04 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020103 150 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA 202 (331)
Q Consensus 150 kqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~ 202 (331)
-..+-.||.+|..|+.....+...+..-+.+.-.+..+-..||++|.+++..+
T Consensus 78 A~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~ 130 (189)
T TIGR02132 78 ASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKL 130 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHH
Confidence 34566777788777776666555555444555566666677777777776654
No 302
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=57.86 E-value=33 Score=27.12 Aligned_cols=30 Identities=30% Similarity=0.514 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQRDT 181 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~ 181 (331)
.+..|+.++..++.+...|..++..+..++
T Consensus 63 ~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l 92 (106)
T PF01920_consen 63 AIEELEERIEKLEKEIKKLEKQLKYLEKKL 92 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544444444433
No 303
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=57.66 E-value=1.1e+02 Score=32.59 Aligned_cols=51 Identities=18% Similarity=0.190 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HH----HhHHHHHHHHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLF---QR----DTTDLSTENTELKLRLQAMEQQA 202 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~L---qr----~~~~L~~EN~eLK~RLqaLEqq~ 202 (331)
.++.||.++..|+.+...|..++..- .. ....+..|-.+++.+|+.++.++
T Consensus 564 ~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w 621 (638)
T PRK10636 564 EIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAW 621 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888888887777777432 11 34455556666666666655554
No 304
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=57.61 E-value=1.2e+02 Score=25.74 Aligned_cols=67 Identities=21% Similarity=0.167 Sum_probs=35.5
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 129 PKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 129 ~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
..+.+|++-.+..+-..---. +----...-.....+..+++.+++++..|..+|..|+.++..|+..
T Consensus 20 ~~~~~~~l~~~l~~~l~~f~~------~~~~g~~~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 20 RVRRRRILTLVLLALLALFQY------LAWFGKNGAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHH------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344555555555554433222 2222222223334455555566666667777777777777777666
No 305
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=57.52 E-value=41 Score=25.80 Aligned_cols=33 Identities=18% Similarity=0.394 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQRDTTDL 184 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L 184 (331)
-+..|+..+.+++.||..|+..+..+.+....|
T Consensus 8 ~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 8 ELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677778888888888888887777665444
No 306
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.34 E-value=1.3e+02 Score=34.22 Aligned_cols=52 Identities=21% Similarity=0.210 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 020103 145 SKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQ 196 (331)
Q Consensus 145 SReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLq 196 (331)
-+.+-.-.++.|..+++.|+.|+..|..+++........|..++.-||.+|.
T Consensus 665 lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 665 LIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334444455566666666666666666666666666666666666666655
No 307
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=57.20 E-value=52 Score=28.77 Aligned_cols=36 Identities=31% Similarity=0.321 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020103 146 KERKARYISELERKVQTLQTEATTLSAQLTLFQRDT 181 (331)
Q Consensus 146 ReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~ 181 (331)
+..|..-+.+|+.++..|+.+..+|..+-..++.++
T Consensus 65 k~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l 100 (119)
T COG1382 65 KVSKEEAVDELEERKETLELRIKTLEKQEEKLQERL 100 (119)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667777777776666666665555544433
No 308
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=56.77 E-value=51 Score=35.69 Aligned_cols=65 Identities=26% Similarity=0.237 Sum_probs=43.3
Q ss_pred cCChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 126 TVDPKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 126 ~~D~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
..|+|-.||-. |+=|-+--..+-++.+. .-...|.+++..|..+++.|.+||..||.||..++.+
T Consensus 274 ~~d~kv~krqQ---------RmIKNResA~~SRkKKK--Ey~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~E 338 (655)
T KOG4343|consen 274 GSDIKVLKRQQ---------RMIKNRESACQSRKKKK--EYMLGLEARLQALLSENEQLKKENATLKRQLDELVSE 338 (655)
T ss_pred ccCHHHHHHHH---------HHHhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 35888888842 33343333344333221 1123477888888889999999999999999998664
No 309
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=56.76 E-value=47 Score=27.84 Aligned_cols=31 Identities=13% Similarity=0.196 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 148 RKARYISELERKVQTLQTEATTLSAQLTLFQ 178 (331)
Q Consensus 148 RKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lq 178 (331)
+.++.+.+++.+++.|+.+|..|..++..|+
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555555555555555555444
No 310
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=56.74 E-value=3.5e+02 Score=31.43 Aligned_cols=74 Identities=27% Similarity=0.307 Sum_probs=54.6
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 128 DPKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTL-----FQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 128 D~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~-----Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
|-...-|=|.||+--.-++++..+|-+++|.+-.+|......|..-+.. +++-...+..|-.+||..++.....
T Consensus 1026 d~~~r~~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kkr~e 1104 (1189)
T KOG1265|consen 1026 DNAGRVRELVNRQTQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDKKRME 1104 (1189)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556689999999999999999999999999999988887654433 3333445667788888777664433
No 311
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=56.73 E-value=2.6e+02 Score=29.48 Aligned_cols=51 Identities=22% Similarity=0.335 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 020103 142 AARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELK 192 (331)
Q Consensus 142 ArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK 192 (331)
|++-..+-++.+..|..+.+.|+++..+|..+-..|..+...|.++-++|.
T Consensus 128 a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 128 ARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444555555555555555555555555555555555544443
No 312
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=56.57 E-value=62 Score=35.66 Aligned_cols=40 Identities=38% Similarity=0.460 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 155 ELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 155 eLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
.++.+|++||+|. |..|+ .+|+....|+.||++|+ ++-..
T Consensus 230 s~~e~i~~LQeE~--l~tQ~-kYQreLErlEKENkeLr-~lll~ 269 (980)
T KOG0447|consen 230 SDKEKIDQLQEEL--LHTQL-KYQRILERLEKENKELR-KLVLQ 269 (980)
T ss_pred hHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHhhHHHH-HHHhh
Confidence 4677889998875 33333 36788999999999998 44333
No 313
>PHA03162 hypothetical protein; Provisional
Probab=56.50 E-value=7.6 Score=34.56 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 148 RKARYISELERKVQTLQTEATTLSAQLT 175 (331)
Q Consensus 148 RKkqyleeLE~kVq~Lq~ENs~L~~qlt 175 (331)
+|+.-+++|+.++..|+.||..|..++.
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556689999999999999999999983
No 314
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=56.42 E-value=1.8e+02 Score=27.44 Aligned_cols=50 Identities=22% Similarity=0.328 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
.+..|+..+..|..+..........+......+...-..|...+..+...
T Consensus 53 ~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~ 102 (264)
T PF06008_consen 53 ELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDN 102 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666666666666666666666666666666666666666666666433
No 315
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=56.13 E-value=1e+02 Score=28.33 Aligned_cols=47 Identities=23% Similarity=0.280 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA 202 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~ 202 (331)
=|.=.|+++..|+.+|..|..+++.|-. ...+|..+-.++..+....
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li~----~Ar~Ne~~~~~~~~l~l~L 87 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELIE----NARENEAIFQRLHRLVLAL 87 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 4566788899999999999888887654 5678888888888776664
No 316
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=55.83 E-value=56 Score=33.41 Aligned_cols=44 Identities=23% Similarity=0.159 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 155 ELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 155 eLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
.|-.+|..|..+...+.++|++-.++|..+..|-..+|.-+..|
T Consensus 144 nl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~L 187 (405)
T KOG2010|consen 144 NLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVL 187 (405)
T ss_pred ceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777777777777777777777766666665555
No 317
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=55.81 E-value=86 Score=26.48 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhccC
Q 020103 208 LNEALKKEVERLKVATGEM 226 (331)
Q Consensus 208 lne~Lk~EVqrLk~atge~ 226 (331)
.|+.|+.|++++|...|..
T Consensus 30 eN~~l~~EL~kyk~~~g~~ 48 (96)
T PF11365_consen 30 ENKQLTEELNKYKSKYGDL 48 (96)
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 3666777888888877654
No 318
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=55.48 E-value=1.7e+02 Score=27.16 Aligned_cols=10 Identities=10% Similarity=0.351 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 020103 155 ELERKVQTLQ 164 (331)
Q Consensus 155 eLE~kVq~Lq 164 (331)
.++.+++.|+
T Consensus 100 k~~~~l~~L~ 109 (194)
T PF15619_consen 100 KTKDELKHLK 109 (194)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 319
>PF14645 Chibby: Chibby family
Probab=55.46 E-value=40 Score=28.95 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 020103 158 RKVQTLQTEATTLSAQLTLFQRDT 181 (331)
Q Consensus 158 ~kVq~Lq~ENs~L~~qlt~Lqr~~ 181 (331)
.+.+.|+.||+-|.-++..|-.-.
T Consensus 78 ~~n~~L~EENN~Lklk~elLlDML 101 (116)
T PF14645_consen 78 KENQQLEEENNLLKLKIELLLDML 101 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666554433
No 320
>PRK04325 hypothetical protein; Provisional
Probab=55.25 E-value=99 Score=24.48 Aligned_cols=27 Identities=11% Similarity=0.247 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQR 179 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr 179 (331)
...+|.++..|+...+-+...|..|..
T Consensus 4 ~~~~e~Ri~~LE~klAfQE~tIe~LN~ 30 (74)
T PRK04325 4 VQEMEDRITELEIQLAFQEDLIDGLNA 30 (74)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777666665555555443
No 321
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=55.09 E-value=65 Score=28.01 Aligned_cols=13 Identities=46% Similarity=0.677 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHH
Q 020103 147 ERKARYISELERK 159 (331)
Q Consensus 147 eRKkqyleeLE~k 159 (331)
+++++|+..|+..
T Consensus 77 E~~~~~i~~~~~~ 89 (139)
T PF13935_consen 77 ERAQQRIAELEQE 89 (139)
T ss_pred HHHHHHHHHHHHH
Confidence 3466666666655
No 322
>PF13166 AAA_13: AAA domain
Probab=55.03 E-value=2.9e+02 Score=29.36 Aligned_cols=46 Identities=15% Similarity=0.333 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 156 LERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 156 LE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
+...+..+..+...+...+..+......+..+-..++..+..++.+
T Consensus 408 ~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~ 453 (712)
T PF13166_consen 408 LKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQ 453 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444444444444444433
No 323
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=54.86 E-value=68 Score=34.15 Aligned_cols=58 Identities=26% Similarity=0.374 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020103 149 KARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVAT 223 (331)
Q Consensus 149 KkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~at 223 (331)
|+.-+++|..+|-.|..-...|..+ .-++|++-+..|+.++.+| ..|.-||+.||.++
T Consensus 567 ~k~s~delr~qi~el~~ive~lk~~-------------~~kel~kl~~dleeek~mr----~~lemei~~lkka~ 624 (627)
T KOG4348|consen 567 KKNSLDELRAQIIELLCIVEALKKD-------------HGKELEKLRKDLEEEKTMR----SNLEMEIEKLKKAV 624 (627)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHH----hhhHhhHHHHHHHh
Confidence 4556777777777666555544433 3345666666677777777 56778899998765
No 324
>PRK00846 hypothetical protein; Provisional
Probab=54.75 E-value=1.1e+02 Score=24.87 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 154 SELERKVQTLQTEATTLSAQLTLFQRD 180 (331)
Q Consensus 154 eeLE~kVq~Lq~ENs~L~~qlt~Lqr~ 180 (331)
.++|.++..|+...+-....+..|...
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~ 35 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEA 35 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666665555555544443
No 325
>PF14282 FlxA: FlxA-like protein
Probab=54.39 E-value=79 Score=26.40 Aligned_cols=20 Identities=30% Similarity=0.557 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSA 172 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~ 172 (331)
|+.|+.+++.|+.+...|..
T Consensus 21 I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 21 IEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 34444444444444444433
No 326
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=54.37 E-value=2.4e+02 Score=28.39 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 020103 181 TTDLSTENTELKLRLQAMEQQAQ 203 (331)
Q Consensus 181 ~~~L~~EN~eLK~RLqaLEqq~q 203 (331)
.++|-.||+-|+.||..++.+.-
T Consensus 191 IDaLi~ENRyL~erl~q~qeE~~ 213 (319)
T PF09789_consen 191 IDALIMENRYLKERLKQLQEEKE 213 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777889999888888766643
No 327
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=54.32 E-value=3.4e+02 Score=31.79 Aligned_cols=49 Identities=20% Similarity=0.350 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAME 199 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLE 199 (331)
.-++.|.-++..|+.+...+..++..+..++..|..|+..|...+...+
T Consensus 815 ~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~ 863 (1174)
T KOG0933|consen 815 NEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVE 863 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3345566666666666666666666666666666666666655554443
No 328
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=54.07 E-value=1.5e+02 Score=25.82 Aligned_cols=66 Identities=11% Similarity=0.155 Sum_probs=40.8
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHH
Q 020103 129 PKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSA-------QLTLFQRDTTDLSTENTELKLR 194 (331)
Q Consensus 129 ~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~-------qlt~Lqr~~~~L~~EN~eLK~R 194 (331)
.+-..+++.--..+-.-|.++..+++.++..+...+.+...|.. ++..++.++..++.+-..++.+
T Consensus 95 L~~y~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~ 167 (218)
T cd07596 95 LKEYLRYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKR 167 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666667777778888888888888887777777653 4444444444444443333333
No 329
>COG5293 Predicted ATPase [General function prediction only]
Probab=54.06 E-value=3.1e+02 Score=29.55 Aligned_cols=78 Identities=13% Similarity=0.201 Sum_probs=56.9
Q ss_pred HHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 132 AKRILANRQSAARSKERKAR-YISELERKVQTLQTEATTLS---------AQLTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 132 ~KRiLaNRESArRSReRKkq-yleeLE~kVq~Lq~ENs~L~---------~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
-|+|..||-+--.+.-.|.+ -+.+++.+++.|..+.+.+. .+.+.|...+..+..|-.++..|++.+.+-
T Consensus 329 ~r~~~e~R~~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~g~~e~y~~l~ee~~~~~~elae~~~rie~l~k~ 408 (591)
T COG5293 329 NRAITEERHDYLQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNRGVFEKYQTLCEEIIALRGELAELEYRIEPLRKL 408 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHH
Confidence 35788888887777766543 46677777777776666543 355677888888889999999999988887
Q ss_pred HHHHHHHH
Q 020103 202 AQLRDALN 209 (331)
Q Consensus 202 ~qLrdaln 209 (331)
..+.+.++
T Consensus 409 ~~~~~~i~ 416 (591)
T COG5293 409 HALDQYIG 416 (591)
T ss_pred HHHHHHHH
Confidence 77765543
No 330
>PRK00295 hypothetical protein; Provisional
Probab=54.05 E-value=1e+02 Score=23.98 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 156 LERKVQTLQTEATTLSAQLTLFQRD 180 (331)
Q Consensus 156 LE~kVq~Lq~ENs~L~~qlt~Lqr~ 180 (331)
+|.++..|+...+-+...|..|...
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~ 27 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDV 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777776666666555555443
No 331
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=53.86 E-value=1.7e+02 Score=26.49 Aligned_cols=45 Identities=16% Similarity=0.137 Sum_probs=36.7
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 129 PKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQ 173 (331)
Q Consensus 129 ~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~q 173 (331)
.+|..++..+-..|.+.|..=.....+.|.++..-..+...+..+
T Consensus 40 e~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e 84 (155)
T PRK06569 40 NNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKE 84 (155)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888888888999988888888888888888888887777665
No 332
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=53.77 E-value=61 Score=35.06 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=14.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHH
Q 020103 179 RDTTDLSTENTELKLRLQAME 199 (331)
Q Consensus 179 r~~~~L~~EN~eLK~RLqaLE 199 (331)
.....|..||..|+.++..++
T Consensus 566 ~~l~~L~~En~~L~~~l~~le 586 (722)
T PF05557_consen 566 STLEALQAENEDLLARLRSLE 586 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 446677788888888885543
No 333
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=53.64 E-value=3.1e+02 Score=29.36 Aligned_cols=46 Identities=20% Similarity=0.206 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQ 196 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLq 196 (331)
..+..|+.++..++.+...+..++..++++...+..+-..++.++.
T Consensus 421 e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 466 (650)
T TIGR03185 421 EQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLD 466 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555554444444444444443
No 334
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=53.19 E-value=1.7e+02 Score=27.31 Aligned_cols=70 Identities=17% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHHH-HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 139 RQSAARSKER-KAR-------YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDAL 208 (331)
Q Consensus 139 RESArRSReR-Kkq-------yleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdal 208 (331)
+..|.+.... |+. =+..|-.-...+..||..|..++..+.+++..|...+..|..+-+.|.++.-+.++|
T Consensus 129 ~~l~e~a~~el~~k~~ale~~A~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~eq~~~e~L 206 (206)
T PF14988_consen 129 LQLGERAHKELKKKAQALELAAKKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQEQWYLESL 206 (206)
T ss_pred HHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
No 335
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=53.09 E-value=1.8e+02 Score=32.61 Aligned_cols=37 Identities=14% Similarity=0.251 Sum_probs=15.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 179 RDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKE 215 (331)
Q Consensus 179 r~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~E 215 (331)
..+..+..|-..+...|..|.....+.+..+.+|...
T Consensus 364 ~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~k 400 (775)
T PF10174_consen 364 AQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKK 400 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444333333333333333
No 336
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=52.97 E-value=1.8e+02 Score=26.36 Aligned_cols=43 Identities=23% Similarity=0.387 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020103 155 ELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQA 197 (331)
Q Consensus 155 eLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqa 197 (331)
+|..+|..|+.+|..|..++..+..+...|.....+|+.....
T Consensus 93 ~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~ 135 (158)
T PF09744_consen 93 DLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNR 135 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHH
Confidence 3444555555555555554444444444455555555444433
No 337
>PLN02320 seryl-tRNA synthetase
Probab=52.83 E-value=1.4e+02 Score=31.69 Aligned_cols=63 Identities=19% Similarity=0.250 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 020103 158 RKVQTLQTEATTLSAQLTLFQ--RDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEMM 227 (331)
Q Consensus 158 ~kVq~Lq~ENs~L~~qlt~Lq--r~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~atge~~ 227 (331)
.++..|+.+.+.++.++.... .+...|..+-++||.+|..+|.+. ..+.+++..+-..++-++
T Consensus 107 ~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~-------~~~~~~l~~~~l~iPN~~ 171 (502)
T PLN02320 107 KEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDL-------VKLTDELQLEAQSIPNMT 171 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhCCCCC
Confidence 334444444444444443310 112344455555555555554442 233444545444444444
No 338
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=52.47 E-value=1.3e+02 Score=32.46 Aligned_cols=69 Identities=17% Similarity=0.197 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 020103 139 RQSAARSKERKARYISELE---RKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQ-LRDA 207 (331)
Q Consensus 139 RESArRSReRKkqyleeLE---~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~q-Lrda 207 (331)
|.-...+.++|++|-.||- ..+..-+++...|.-++...+++...+..+|+.++..+..||.+-+ ++|+
T Consensus 34 ~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d~ 106 (604)
T KOG3564|consen 34 RKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIKDM 106 (604)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4445567777777766654 4455556667778888999999999999999999999999999864 4433
No 339
>PLN02678 seryl-tRNA synthetase
Probab=52.36 E-value=96 Score=32.35 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 020103 159 KVQTLQTEATTLSAQLTLFQRDT 181 (331)
Q Consensus 159 kVq~Lq~ENs~L~~qlt~Lqr~~ 181 (331)
++-.|-.+..+|..++..|+.+.
T Consensus 34 ~il~ld~~~r~l~~~~e~lr~er 56 (448)
T PLN02678 34 EVIALDKEWRQRQFELDSLRKEF 56 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 340
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=52.32 E-value=52 Score=34.75 Aligned_cols=29 Identities=17% Similarity=0.371 Sum_probs=22.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020103 174 LTLFQRDTTDLSTENTELKLRLQAMEQQA 202 (331)
Q Consensus 174 lt~Lqr~~~~L~~EN~eLK~RLqaLEqq~ 202 (331)
+..|+.++....+||++|+.+++.+|.+.
T Consensus 274 id~LE~rv~~~taeNqeL~kkV~~Le~~N 302 (472)
T KOG0709|consen 274 IDGLESRVSAFTAENQELQKKVEELELSN 302 (472)
T ss_pred HHHHhhhhhhcccCcHHHHHHHHHHhhcc
Confidence 44566677778889999999888887764
No 341
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=52.01 E-value=3.8e+02 Score=30.94 Aligned_cols=36 Identities=22% Similarity=0.208 Sum_probs=20.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 135 ILANRQSAARSKERKARYISELERKVQTLQTEATTL 170 (331)
Q Consensus 135 iLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L 170 (331)
+.+.-++|..+...+.+...+|..++..++.+...+
T Consensus 450 i~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~ 485 (980)
T KOG0980|consen 450 IQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRA 485 (980)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666666666666666665555554443
No 342
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=52.01 E-value=1.2e+02 Score=28.50 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 154 SELERKVQTLQTEATTLSAQLTLFQR 179 (331)
Q Consensus 154 eeLE~kVq~Lq~ENs~L~~qlt~Lqr 179 (331)
..|+.+|+.|+.++....+++..|..
T Consensus 89 ~~l~ek~q~l~~t~s~veaEik~L~s 114 (201)
T KOG4603|consen 89 VALTEKVQSLQQTCSYVEAEIKELSS 114 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555544443
No 343
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=51.64 E-value=34 Score=31.94 Aligned_cols=44 Identities=23% Similarity=0.309 Sum_probs=30.3
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 128 DPKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLF 177 (331)
Q Consensus 128 D~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~L 177 (331)
+-.|.+|..+++ .+..++.+.+|+.+|..|+.+...+...+..|
T Consensus 89 Ey~R~~~~e~~k------ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L 132 (181)
T KOG3335|consen 89 EYWRQARKERKK------EEKRKQEIMELRLKVEKLENAIAELTKFFSQL 132 (181)
T ss_pred hhHHhhhcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777766655 56677788888888888877555555544443
No 344
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=51.56 E-value=1.5e+02 Score=25.01 Aligned_cols=25 Identities=12% Similarity=0.053 Sum_probs=13.5
Q ss_pred CChHHHHHHHHhHHHHHHHHHHHHH
Q 020103 127 VDPKRAKRILANRQSAARSKERKAR 151 (331)
Q Consensus 127 ~D~KR~KRiLaNRESArRSReRKkq 151 (331)
.|-..+...+.|-.-|.-..+.+..
T Consensus 27 ~Di~~Lq~~i~~vtf~~l~~e~~~~ 51 (118)
T PF13815_consen 27 LDIDTLQENIENVTFCDLENEDCQH 51 (118)
T ss_pred cCHHHHHHHHHhcceeccChhhccC
Confidence 4555555555555555555555544
No 345
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.47 E-value=1.3e+02 Score=33.05 Aligned_cols=63 Identities=25% Similarity=0.421 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 020103 157 ERKVQTLQTEATTLSAQLTLFQRDTT-------DLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEM 226 (331)
Q Consensus 157 E~kVq~Lq~ENs~L~~qlt~Lqr~~~-------~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~atge~ 226 (331)
|..|+.|+.++..|..+++....... .|..|...|++++..| ++..+.++.|+..++.+.|+.
T Consensus 7 eq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEl-------eaeyd~~R~Eldqtkeal~q~ 76 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEEL-------EAEYDLARTELDQTKEALGQY 76 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666655444332 2334555666666555 356677777777777777654
No 346
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=51.43 E-value=2.2e+02 Score=26.94 Aligned_cols=70 Identities=21% Similarity=0.347 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 020103 156 LERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGE 225 (331)
Q Consensus 156 LE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~atge 225 (331)
+|+.+..-+.....|...+...+.+-......-.+.+..+++|+.+..-..+.-..|...|..|......
T Consensus 117 ~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~~ 186 (192)
T PF11180_consen 117 LERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQANE 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3334444444444444444444455555555555566666666555544444455666677777665543
No 347
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=51.40 E-value=1.7e+02 Score=28.88 Aligned_cols=17 Identities=18% Similarity=0.128 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 020103 207 ALNEALKKEVERLKVAT 223 (331)
Q Consensus 207 alne~Lk~EVqrLk~at 223 (331)
+...-.++++.+++...
T Consensus 223 ~el~~aK~~~~~~~~~~ 239 (264)
T PF07246_consen 223 HELSDAKEDMIRLRNDI 239 (264)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 33344445555555443
No 348
>PHA03011 hypothetical protein; Provisional
Probab=51.30 E-value=1.4e+02 Score=25.91 Aligned_cols=49 Identities=22% Similarity=0.253 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020103 169 TLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATG 224 (331)
Q Consensus 169 ~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~atg 224 (331)
.|.+|...|-.++.-++.|-+.|..-+ |-.+-..-.|++|+.+||....
T Consensus 68 eL~~qYN~L~dEYn~i~Ne~k~~~~iI-------Qdn~d~I~~LraeIDkLK~nia 116 (120)
T PHA03011 68 ELIAQYNELLDEYNLIENEIKDLEIII-------QDNDDEIHFLRAEIDKLKENIA 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhchHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444443322 2233345567888888887554
No 349
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=51.00 E-value=3.2e+02 Score=30.39 Aligned_cols=11 Identities=18% Similarity=0.413 Sum_probs=6.7
Q ss_pred cccCCCccccc
Q 020103 306 DINGRNSHLVK 316 (331)
Q Consensus 306 ~i~~~~~~~~~ 316 (331)
=|-|+|++++|
T Consensus 738 IIHGkGtG~Lr 748 (782)
T PRK00409 738 IIHGKGTGKLR 748 (782)
T ss_pred EEcCCChhHHH
Confidence 36677776544
No 350
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=50.97 E-value=3.9e+02 Score=30.09 Aligned_cols=80 Identities=25% Similarity=0.330 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 020103 147 ERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA----QLRDALNEALKKEVERLKVA 222 (331)
Q Consensus 147 eRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~----qLrdalne~Lk~EVqrLk~a 222 (331)
+-|-.++++|..+.+.|....+.-..++..+.-....|..|-..++.....+-+.. --+...-+.|..||..+|+.
T Consensus 604 Enk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~~EveK~k~~ 683 (786)
T PF05483_consen 604 ENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEELLGEVEKAKLT 683 (786)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 34556666666666666666555555555555555555555555555444432221 11223556788899999988
Q ss_pred hccC
Q 020103 223 TGEM 226 (331)
Q Consensus 223 tge~ 226 (331)
+.+.
T Consensus 684 a~EA 687 (786)
T PF05483_consen 684 ADEA 687 (786)
T ss_pred HHHH
Confidence 7654
No 351
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=50.86 E-value=1.2e+02 Score=23.90 Aligned_cols=63 Identities=22% Similarity=0.326 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVA 222 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~a 222 (331)
|.+=..++..|..|-..|+.+.-.+......|...+.++...+..+. ...+.+..++..|+..
T Consensus 7 l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~-------~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 7 LAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELK-------KKLEELEKELESLEER 69 (74)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 45566777777777777777766665555555555555554444432 2233444566666543
No 352
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=50.85 E-value=1.3e+02 Score=27.34 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=39.0
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 129 PKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRD 180 (331)
Q Consensus 129 ~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~ 180 (331)
.+..+++++.|.-|+-.=++|-.-..+|..+++..+..+..+...|+.+..+
T Consensus 83 ~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~ 134 (152)
T PF11500_consen 83 EKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQ 134 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888888888888877777777666666655443
No 353
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=50.55 E-value=5.2 Score=43.03 Aligned_cols=61 Identities=20% Similarity=0.381 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHH
Q 020103 140 QSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTD---LSTENTELKLRLQAMEQ 200 (331)
Q Consensus 140 ESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~---L~~EN~eLK~RLqaLEq 200 (331)
++....=++|.+-+.+|..+|+.|+..|..|..++..|..+... +..+...||.++..|+.
T Consensus 314 E~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~ 377 (713)
T PF05622_consen 314 ENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQ 377 (713)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33333444688889999999999999998888777777655443 33344444444444443
No 354
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=50.31 E-value=1.8e+02 Score=25.74 Aligned_cols=20 Identities=30% Similarity=0.190 Sum_probs=8.5
Q ss_pred HHhHHHHHHHHHHHHHHHHH
Q 020103 179 RDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 179 r~~~~L~~EN~eLK~RLqaL 198 (331)
.....+..++..++..|...
T Consensus 84 eKl~~~~~~~~~l~~~l~~~ 103 (177)
T PF13870_consen 84 EKLHFLSEELERLKQELKDR 103 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443
No 355
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=50.24 E-value=1e+02 Score=34.01 Aligned_cols=48 Identities=23% Similarity=0.260 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
..+.+||.|-+.|+.|+.++..+++.+++....-..|-..||..++..
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqa 140 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQA 140 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHH
Confidence 457789999999999999999999998887766666666666655443
No 356
>PLN02320 seryl-tRNA synthetase
Probab=50.12 E-value=3.5e+02 Score=28.91 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 020103 150 ARYISELERKVQTLQTEATTLSAQLTLFQRDTT 182 (331)
Q Consensus 150 kqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~ 182 (331)
...+.+|..+...++.+...|.++...+.++..
T Consensus 92 vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~ 124 (502)
T PLN02320 92 LELVLELYENMLALQKEVERLRAERNAVANKMK 124 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666766666666666655543
No 357
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=50.09 E-value=98 Score=31.14 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020103 156 LERKVQTLQTEATTLSAQLTL 176 (331)
Q Consensus 156 LE~kVq~Lq~ENs~L~~qlt~ 176 (331)
|-.++..++.++..|+.+++.
T Consensus 91 Lrqkl~E~qGD~KlLR~~la~ 111 (319)
T PF09789_consen 91 LRQKLNEAQGDIKLLREKLAR 111 (319)
T ss_pred HHHHHHHHhchHHHHHHHHHh
Confidence 333444444444444444433
No 358
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=50.03 E-value=1.4e+02 Score=24.36 Aligned_cols=15 Identities=27% Similarity=0.426 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 020103 207 ALNEALKKEVERLKV 221 (331)
Q Consensus 207 alne~Lk~EVqrLk~ 221 (331)
.+|..|..+...++.
T Consensus 40 ~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 40 ELNKKLQDQLLNLQR 54 (76)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 344444444444433
No 359
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=49.97 E-value=2.4e+02 Score=26.97 Aligned_cols=16 Identities=31% Similarity=0.331 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHhccC
Q 020103 211 ALKKEVERLKVATGEM 226 (331)
Q Consensus 211 ~Lk~EVqrLk~atge~ 226 (331)
.+.+|+..||..+.++
T Consensus 85 r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 85 RLYEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445666666655554
No 360
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=49.69 E-value=1.5e+02 Score=32.91 Aligned_cols=74 Identities=23% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 020103 149 KARYISELERKVQTLQTEAT---TLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGE 225 (331)
Q Consensus 149 KkqyleeLE~kVq~Lq~ENs---~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~atge 225 (331)
..+|+++|+....++..+.+ .-...+..|+.+..+|.+++..+ ..|+.+.-.-+-+|+-|+.+.++-+.+..+
T Consensus 249 qlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~----~~l~~~~~~LELeN~~l~tkL~rwE~~~~~ 324 (716)
T KOG4593|consen 249 QLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGRL----EKLQSTLLGLELENEDLLTKLQRWERADQE 324 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Q ss_pred C
Q 020103 226 M 226 (331)
Q Consensus 226 ~ 226 (331)
+
T Consensus 325 ~ 325 (716)
T KOG4593|consen 325 M 325 (716)
T ss_pred h
No 361
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=49.68 E-value=1.7e+02 Score=28.86 Aligned_cols=52 Identities=19% Similarity=0.290 Sum_probs=31.7
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 129 PKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRD 180 (331)
Q Consensus 129 ~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~ 180 (331)
-|..|+.+.+.....+.|.-.-..|..||.++..++.++....++|+.+.|+
T Consensus 143 ~R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~ 194 (271)
T PF13805_consen 143 SRDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQ 194 (271)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Confidence 3445556666555444443333466777777777777777777777766665
No 362
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=49.62 E-value=86 Score=28.82 Aligned_cols=38 Identities=21% Similarity=0.372 Sum_probs=27.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 173 QLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNE 210 (331)
Q Consensus 173 qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne 210 (331)
-+.+.+++...|..+|++|+.+++.|-..++-.+.+..
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li~~Ar~Ne~~~~ 78 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELIENARENEAIFQ 78 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888888888888888888776654444333
No 363
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=49.24 E-value=56 Score=31.82 Aligned_cols=44 Identities=23% Similarity=0.259 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 020103 147 ERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLR 194 (331)
Q Consensus 147 eRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~R 194 (331)
.-+..+..+|..+.+.|+.++..+..... +...|+.||..||.-
T Consensus 62 ~~~~~~~~~~~~en~~Lk~~l~~~~~~~~----~~~~l~~EN~~Lr~l 105 (284)
T COG1792 62 LEFLKSLKDLALENEELKKELAELEQLLE----EVESLEEENKRLKEL 105 (284)
T ss_pred HHHHHHhHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 34555556666666666665554444333 344567777776543
No 364
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=49.21 E-value=2.8e+02 Score=27.81 Aligned_cols=82 Identities=23% Similarity=0.425 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 020103 139 RQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA-QLRDALNEALKKEVE 217 (331)
Q Consensus 139 RESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~-qLrdalne~Lk~EVq 217 (331)
+.+.-+-.+++ .+|..++..+..+...|.+++..+......+..+-.++-.+++.+.... .+..-+++ |..++.
T Consensus 19 k~~~~e~~ekR----~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~e-L~~~~~ 93 (294)
T COG1340 19 KEEIEELKEKR----DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQE-LRKEYR 93 (294)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 34444444444 7788888888888888888888888888888888888877777765553 33322333 556666
Q ss_pred HHHHHhcc
Q 020103 218 RLKVATGE 225 (331)
Q Consensus 218 rLk~atge 225 (331)
.|+...+.
T Consensus 94 ~l~e~~~~ 101 (294)
T COG1340 94 ELKEKRNE 101 (294)
T ss_pred HHHHHhhh
Confidence 66665554
No 365
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=49.05 E-value=1.2e+02 Score=28.18 Aligned_cols=62 Identities=15% Similarity=0.136 Sum_probs=30.4
Q ss_pred hhcCChhHhhhhccCChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 113 KKAMDPDKLAELWTVDPKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLF 177 (331)
Q Consensus 113 Kk~~~~~~LaEla~~D~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~L 177 (331)
..+.=+...+|+.....+.+... ++..+.-=++|++++.+-+.+...++.+..+|..++...
T Consensus 111 ~~~~C~N~C~e~~~~~~~~~~~~---~~~~~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~ 172 (176)
T PF12999_consen 111 SGGKCPNTCAELGKEYREELEEE---EEIYKEGLKIRQELIEEAKKKREELEKKLEELEKEIQAA 172 (176)
T ss_pred CCCCCccHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667777632221111111 122223333456777766666666666666555555543
No 366
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=48.99 E-value=2.6e+02 Score=31.18 Aligned_cols=10 Identities=50% Similarity=0.677 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 020103 211 ALKKEVERLK 220 (331)
Q Consensus 211 ~Lk~EVqrLk 220 (331)
.|.+-|.-||
T Consensus 108 slQKqvs~Lk 117 (717)
T PF09730_consen 108 SLQKQVSVLK 117 (717)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 367
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=48.53 E-value=2.3e+02 Score=31.96 Aligned_cols=37 Identities=24% Similarity=0.385 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 162 TLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 162 ~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
.|..+...+..++..++.....|...+..|+..+..|
T Consensus 220 ~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL 256 (916)
T KOG0249|consen 220 RLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQL 256 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3444444444444444444444444444444444333
No 368
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=48.46 E-value=1.9e+02 Score=25.31 Aligned_cols=46 Identities=17% Similarity=0.154 Sum_probs=40.0
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 129 PKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQL 174 (331)
Q Consensus 129 ~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~ql 174 (331)
.+|..++...-+.|.+.+..=.....+.|.++...+.+...+..+.
T Consensus 52 ~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A 97 (156)
T CHL00118 52 DERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQS 97 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688889999999999999999999999999999999888876654
No 369
>PRK14143 heat shock protein GrpE; Provisional
Probab=48.36 E-value=1.3e+02 Score=28.91 Aligned_cols=15 Identities=33% Similarity=0.559 Sum_probs=9.7
Q ss_pred chHHHhhhcCCCcccccccccC
Q 020103 288 HAFSEMLQQDPLGRLQGLDING 309 (331)
Q Consensus 288 ~~~~~~~~~~~~~~~qgl~i~~ 309 (331)
+.+-+.+|. ||-|.+
T Consensus 196 gtVv~v~qk-------GY~l~~ 210 (238)
T PRK14143 196 DVVLEELQR-------GYHLGG 210 (238)
T ss_pred CeEEEEeeC-------CceeCC
Confidence 455666776 788844
No 370
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=48.34 E-value=1.5e+02 Score=30.87 Aligned_cols=37 Identities=14% Similarity=0.147 Sum_probs=23.5
Q ss_pred CChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 127 VDPKRAKRILANRQSAARSKERKARYISELERKVQTL 163 (331)
Q Consensus 127 ~D~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~L 163 (331)
.++|..||+..--+-=||-|.+=...|.+|-.-|=..
T Consensus 226 ~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~ 262 (411)
T KOG1318|consen 226 ALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKC 262 (411)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4445444545555677777777778888887655444
No 371
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=48.14 E-value=1.3e+02 Score=33.07 Aligned_cols=15 Identities=40% Similarity=0.423 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 020103 207 ALNEALKKEVERLKV 221 (331)
Q Consensus 207 alne~Lk~EVqrLk~ 221 (331)
..++.+++|+.-||.
T Consensus 344 sDYeeIK~ELsiLk~ 358 (629)
T KOG0963|consen 344 SDYEEIKKELSILKA 358 (629)
T ss_pred ccHHHHHHHHHHHHH
Confidence 344455555555543
No 372
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=48.06 E-value=87 Score=33.18 Aligned_cols=17 Identities=12% Similarity=0.302 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020103 154 SELERKVQTLQTEATTL 170 (331)
Q Consensus 154 eeLE~kVq~Lq~ENs~L 170 (331)
.+-+.+...|+.+...|
T Consensus 72 teqQ~kasELEKqLaaL 88 (475)
T PRK13729 72 TEMQVTAAQMQKQYEEI 88 (475)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 373
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=47.98 E-value=3.7e+02 Score=28.59 Aligned_cols=15 Identities=7% Similarity=0.337 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHhc
Q 020103 210 EALKKEVERLKVATG 224 (331)
Q Consensus 210 e~Lk~EVqrLk~atg 224 (331)
.=|++.+.+++..+.
T Consensus 143 ~Pl~e~l~~f~~~v~ 157 (475)
T PRK10361 143 SPLREQLDGFRRQVQ 157 (475)
T ss_pred hhHHHHHHHHHHHHH
Confidence 335577788876554
No 374
>PRK11281 hypothetical protein; Provisional
Probab=47.83 E-value=1.8e+02 Score=33.96 Aligned_cols=52 Identities=19% Similarity=0.096 Sum_probs=23.1
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 129 PKRAKRILANRQSAARSKERKARYISEL----ERKVQTLQTEATTLSAQLTLFQRD 180 (331)
Q Consensus 129 ~KR~KRiLaNRESArRSReRKkqyleeL----E~kVq~Lq~ENs~L~~qlt~Lqr~ 180 (331)
++.+.|+-.||.-.+.-+.+.+.-...- +.+...|++|...|..++...++.
T Consensus 159 ERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~ 214 (1113)
T PRK11281 159 ERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKS 214 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666665555554443211000 233444455555555554444443
No 375
>smart00340 HALZ homeobox associated leucin zipper.
Probab=47.79 E-value=37 Score=25.01 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=17.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 174 LTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 174 lt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
...|++-+..|..||+.|...++.|
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eL 31 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQEL 31 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777788888888876554443
No 376
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=47.72 E-value=2.4e+02 Score=26.35 Aligned_cols=7 Identities=43% Similarity=0.952 Sum_probs=2.7
Q ss_pred HHHHhHH
Q 020103 134 RILANRQ 140 (331)
Q Consensus 134 RiLaNRE 140 (331)
+.+-||.
T Consensus 81 k~lE~r~ 87 (237)
T PF00261_consen 81 KVLENRE 87 (237)
T ss_dssp HHHHHHH
T ss_pred HHHHhHH
Confidence 3333333
No 377
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=47.70 E-value=2.2e+02 Score=32.18 Aligned_cols=12 Identities=42% Similarity=0.545 Sum_probs=9.2
Q ss_pred HHHHHHHHHhcc
Q 020103 214 KEVERLKVATGE 225 (331)
Q Consensus 214 ~EVqrLk~atge 225 (331)
+||.||+..+-.
T Consensus 536 aEi~RL~eLtR~ 547 (861)
T PF15254_consen 536 AEIERLRELTRT 547 (861)
T ss_pred HHHHHHHHHHHH
Confidence 788888887744
No 378
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=47.64 E-value=76 Score=24.50 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 148 RKARYISELERKVQTLQTEATTLSAQLTLFQ 178 (331)
Q Consensus 148 RKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lq 178 (331)
.....+..++.++..++.+|..|..++..|.
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445566677777777777777776666543
No 379
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=47.47 E-value=1.5e+02 Score=30.56 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--H---HHHHH---HHHHHHHHH
Q 020103 184 LSTENTELKLRLQAMEQQAQLR--D---ALNEA---LKKEVERLK 220 (331)
Q Consensus 184 L~~EN~eLK~RLqaLEqq~qLr--d---alne~---Lk~EVqrLk 220 (331)
-..|-..||+.|..||....-+ + -+.|+ ++..|.+|.
T Consensus 274 Hq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 274 HQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3467788899998888765222 1 13333 446677777
No 380
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=47.33 E-value=76 Score=33.66 Aligned_cols=49 Identities=16% Similarity=0.259 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQ------RDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lq------r~~~~L~~EN~eLK~RLqaLEqq 201 (331)
++.||.++..|+.+...|..++..-. .....+..|-.+++.++..++.+
T Consensus 570 ~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (635)
T PRK11147 570 LEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAFER 624 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888887774321 03344444444444444444333
No 381
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=47.31 E-value=1.4e+02 Score=23.68 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 020103 163 LQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQ 200 (331)
Q Consensus 163 Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEq 200 (331)
.+...+.|...++..+++...|...+..|-.++..|..
T Consensus 26 Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ 63 (70)
T PF04899_consen 26 WQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSE 63 (70)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444433
No 382
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=47.28 E-value=3.1e+02 Score=29.92 Aligned_cols=45 Identities=11% Similarity=0.279 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 157 ERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 157 E~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
+.-|..++..+..+...+..++.++.....|+..|+.....|..+
T Consensus 279 ~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~ 323 (581)
T KOG0995|consen 279 QAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQ 323 (581)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444455555555555555555555544444333
No 383
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=47.19 E-value=2e+02 Score=30.43 Aligned_cols=54 Identities=19% Similarity=0.322 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020103 149 KARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA 202 (331)
Q Consensus 149 KkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~ 202 (331)
..+|++.|...+++.......+...+..++++...+..+-.+|.-+|..+-.+.
T Consensus 430 SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~T 483 (507)
T PF05600_consen 430 SPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERT 483 (507)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 457888888888888888888888888888888888888888888777765443
No 384
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=47.03 E-value=2.6e+02 Score=26.61 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 020103 148 RKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDL 184 (331)
Q Consensus 148 RKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L 184 (331)
+...-+..|+.+.+.++.+...|..+...+......|
T Consensus 30 e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL 66 (246)
T PF00769_consen 30 ESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRL 66 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555544444444443333333
No 385
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=46.65 E-value=1.2e+02 Score=23.35 Aligned_cols=46 Identities=9% Similarity=0.281 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 020103 155 ELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQ 200 (331)
Q Consensus 155 eLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEq 200 (331)
+++.++..+++....+...+..+++....+..+-..+..+|..++.
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444445555443
No 386
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=46.53 E-value=1.5e+02 Score=23.51 Aligned_cols=77 Identities=18% Similarity=0.259 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Q 020103 147 ERKARYISELERKVQTLQTEATTLSAQLTL-FQRDTTDLSTENTELKLRLQAMEQQA-QLRDALNEALKKEVERLKVAT 223 (331)
Q Consensus 147 eRKkqyleeLE~kVq~Lq~ENs~L~~qlt~-Lqr~~~~L~~EN~eLK~RLqaLEqq~-qLrdalne~Lk~EVqrLk~at 223 (331)
.....++..|+..+..++........+|.. ...-...|..+...|-.+|....... ..-....+.|..++..|+.+.
T Consensus 17 ~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~ 95 (127)
T smart00502 17 AELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSHAI 95 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666666666666632 23333445555666666666654443 112234444555555554444
No 387
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=46.42 E-value=3.3e+02 Score=28.54 Aligned_cols=65 Identities=15% Similarity=0.304 Sum_probs=39.6
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 020103 129 PKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQ 196 (331)
Q Consensus 129 ~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLq 196 (331)
+||.+.++..-++ -|+++.+|..+=..-+..|+.|...|..|+..-..+....+.+...|..+|+
T Consensus 113 E~khrKli~dLE~---dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLe 177 (561)
T KOG1103|consen 113 EKKHRKLIKDLEA---DREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLE 177 (561)
T ss_pred HHHHHHHHHHHHH---HHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443332 3455666666666667788888888888887666665556555555554443
No 388
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=46.24 E-value=1.3e+02 Score=28.01 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 020103 183 DLSTENTELKLRLQAM 198 (331)
Q Consensus 183 ~L~~EN~eLK~RLqaL 198 (331)
.+..+..+|+..|+..
T Consensus 157 e~~~~l~~l~~ei~~~ 172 (176)
T PF12999_consen 157 ELEKKLEELEKEIQAA 172 (176)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 389
>PRK01156 chromosome segregation protein; Provisional
Probab=46.09 E-value=4.5e+02 Score=29.00 Aligned_cols=6 Identities=0% Similarity=0.545 Sum_probs=2.7
Q ss_pred hHHHhh
Q 020103 289 AFSEML 294 (331)
Q Consensus 289 ~~~~~~ 294 (331)
.+-++|
T Consensus 845 ~l~~~l 850 (895)
T PRK01156 845 NLKDII 850 (895)
T ss_pred HHHHHH
Confidence 344444
No 390
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=46.06 E-value=1.9e+02 Score=24.74 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=8.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHH
Q 020103 177 FQRDTTDLSTENTELKLRLQA 197 (331)
Q Consensus 177 Lqr~~~~L~~EN~eLK~RLqa 197 (331)
++.+++.|.-.|..|-.|++.
T Consensus 45 ~eqE~dSL~FrN~QL~kRV~~ 65 (102)
T PF10205_consen 45 LEQENDSLTFRNQQLTKRVEV 65 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444333
No 391
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=45.94 E-value=1.8e+02 Score=28.98 Aligned_cols=10 Identities=30% Similarity=0.395 Sum_probs=4.8
Q ss_pred CCCCCCCCCC
Q 020103 92 RYSNSIDGTT 101 (331)
Q Consensus 92 ~~s~s~d~~~ 101 (331)
-.|.|+|..+
T Consensus 68 DtSsS~dse~ 77 (302)
T PF09738_consen 68 DTSSSVDSEA 77 (302)
T ss_pred cccccccccc
Confidence 3445555443
No 392
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=45.92 E-value=3.5e+02 Score=28.42 Aligned_cols=15 Identities=27% Similarity=0.384 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 020103 191 LKLRLQAMEQQAQLR 205 (331)
Q Consensus 191 LK~RLqaLEqq~qLr 205 (331)
|..+...|.....|.
T Consensus 214 L~~e~~~L~n~e~i~ 228 (563)
T TIGR00634 214 LEAEQQRLSNLEKLR 228 (563)
T ss_pred HHHHHHHHhCHHHHH
Confidence 444444443333333
No 393
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=45.90 E-value=70 Score=24.78 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTL 176 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~ 176 (331)
++||+.++..|+.|+..+...+..
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888777654
No 394
>PRK10963 hypothetical protein; Provisional
Probab=45.80 E-value=81 Score=29.36 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA 202 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~ 202 (331)
|.=.|++++.|+.+|..|..++..|- ....+|..+-.++..+....
T Consensus 39 VSL~ErQ~~~LR~r~~~Le~~l~~Li----~~A~~Ne~l~~~~~~l~l~L 84 (223)
T PRK10963 39 VSLVEWQMARQRNHIHVLEEEMTLLM----EQAIANEDLFYRLLPLQSRL 84 (223)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 34467788888888888888887654 35678888888887776664
No 395
>PRK00736 hypothetical protein; Provisional
Probab=45.76 E-value=1.4e+02 Score=23.19 Aligned_cols=23 Identities=9% Similarity=0.199 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020103 156 LERKVQTLQTEATTLSAQLTLFQ 178 (331)
Q Consensus 156 LE~kVq~Lq~ENs~L~~qlt~Lq 178 (331)
+|.++..|+...+-+...|..|.
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln 25 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELS 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666665555555544443
No 396
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=45.76 E-value=4.5e+02 Score=28.99 Aligned_cols=33 Identities=21% Similarity=0.195 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 166 EATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 166 ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
|..-+...+...+.....|..|+..|+.+++..
T Consensus 236 ev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~ 268 (629)
T KOG0963|consen 236 EVSLIMTELEDAQQRIVFLEREVEQLREQLAKA 268 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444555555666677777777766543
No 397
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=45.68 E-value=1.6e+02 Score=31.75 Aligned_cols=51 Identities=18% Similarity=0.252 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020103 148 RKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA 202 (331)
Q Consensus 148 RKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~ 202 (331)
++|...++|+.+++. ..++...+..|.+++..|...-+.+...+..|++..
T Consensus 275 ~lk~~n~~l~e~i~e----a~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~ 325 (622)
T COG5185 275 NLKTQNDNLYEKIQE----AMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKS 325 (622)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 444455555555543 223455555555666666655555555555555544
No 398
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=45.66 E-value=2.5e+02 Score=26.70 Aligned_cols=17 Identities=18% Similarity=0.196 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHhccC
Q 020103 210 EALKKEVERLKVATGEM 226 (331)
Q Consensus 210 e~Lk~EVqrLk~atge~ 226 (331)
..|..|+..||......
T Consensus 90 ~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 90 GQLEAELAELREELACA 106 (202)
T ss_pred hhhHHHHHHHHHHHHhh
Confidence 34556777777776654
No 399
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=45.48 E-value=1.5e+02 Score=30.03 Aligned_cols=26 Identities=27% Similarity=0.540 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 150 ARYISELERKVQTLQTEATTLSAQLT 175 (331)
Q Consensus 150 kqyleeLE~kVq~Lq~ENs~L~~qlt 175 (331)
.+|++.|+.++..|+.+..+|..++.
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~ 266 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLE 266 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666665555544
No 400
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=45.35 E-value=1.7e+02 Score=23.90 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 193 LRLQAMEQQAQLRDALNEALKKEVERL 219 (331)
Q Consensus 193 ~RLqaLEqq~qLrdalne~Lk~EVqrL 219 (331)
.|+...+....--+..|+.|..=|..|
T Consensus 37 ~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 37 DRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333345677777777776
No 401
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=45.13 E-value=1.3e+02 Score=31.62 Aligned_cols=44 Identities=27% Similarity=0.296 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 020103 142 AARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLS 185 (331)
Q Consensus 142 ArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~ 185 (331)
-.-.|.||+.-+++||.-|.--++|..-...+...++++.++|.
T Consensus 341 ~~~~~~~kk~~~eeLESIVRiKqAEA~MFQ~kAdEARrEAE~Lq 384 (446)
T PF07227_consen 341 LQFERQRKKPQIEELESIVRIKQAEAKMFQLKADEARREAEGLQ 384 (446)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999998888887776666666666665554
No 402
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=45.03 E-value=2.9e+02 Score=29.10 Aligned_cols=68 Identities=10% Similarity=0.193 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020103 156 LERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVAT 223 (331)
Q Consensus 156 LE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~at 223 (331)
+..++............++..|+.....|..|-...|..+..+.+...........|..|+.+++..+
T Consensus 286 ~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eL 353 (522)
T PF05701_consen 286 AKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSEL 353 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Confidence 33333333333333444444444444555555555555555555554444455556666666665544
No 403
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=45.01 E-value=3.4e+02 Score=27.41 Aligned_cols=54 Identities=24% Similarity=0.413 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020103 144 RSKERKARYISELERKVQ---TLQTEA----TTLSAQLTLFQRDTTDLSTENTELKLRLQA 197 (331)
Q Consensus 144 RSReRKkqyleeLE~kVq---~Lq~EN----s~L~~qlt~Lqr~~~~L~~EN~eLK~RLqa 197 (331)
.+.++.+.|+++.|.-.. .|+... ..|...+.....+...|.+||..|..+|+.
T Consensus 21 q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~ 81 (305)
T PF14915_consen 21 QNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEK 81 (305)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHH
Confidence 456677778777765322 222222 234445555666777777788877776644
No 404
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=44.93 E-value=3.6e+02 Score=27.65 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=15.5
Q ss_pred hhhHHhhhcCChhHhhhhccCChH
Q 020103 107 LESIEAKKAMDPDKLAELWTVDPK 130 (331)
Q Consensus 107 ~~~~~~Kk~~~~~~LaEla~~D~K 130 (331)
.|..-..++-+|...+|++..|-.
T Consensus 235 ~D~vAd~ra~TPtaaae~~~p~~~ 258 (432)
T TIGR00237 235 SDFVADLRAPTPSAAAEIVSPNQD 258 (432)
T ss_pred HHHhhhccCCCcHHHHHHhCccHH
Confidence 444445677777778887766643
No 405
>PRK00106 hypothetical protein; Provisional
Probab=44.78 E-value=4.3e+02 Score=28.43 Aligned_cols=7 Identities=14% Similarity=0.150 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 020103 150 ARYISEL 156 (331)
Q Consensus 150 kqyleeL 156 (331)
+++..+.
T Consensus 71 ke~~lEa 77 (535)
T PRK00106 71 KELLLEA 77 (535)
T ss_pred HHHHHHH
Confidence 3333333
No 406
>PRK14148 heat shock protein GrpE; Provisional
Probab=44.66 E-value=2e+02 Score=26.92 Aligned_cols=42 Identities=12% Similarity=0.207 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 157 ERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 157 E~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
+.++..|+.+...|..++..++.++..+.+|...++.|++.=
T Consensus 39 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE 80 (195)
T PRK14148 39 EEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERD 80 (195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666777777777777777776553
No 407
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=44.64 E-value=1.8e+02 Score=25.17 Aligned_cols=27 Identities=33% Similarity=0.506 Sum_probs=2.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020103 173 QLTLFQRDTTDLSTENTELKLRLQAME 199 (331)
Q Consensus 173 qlt~Lqr~~~~L~~EN~eLK~RLqaLE 199 (331)
.+..+...-..|..|..+|+.+|++|+
T Consensus 94 ~~eilr~~g~~l~~eEe~L~~~le~l~ 120 (141)
T PF13874_consen 94 KQEILRNRGYALSPEEEELRKRLEALE 120 (141)
T ss_dssp HHHHHHH--------------------
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 333333333344445555555554443
No 408
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=44.60 E-value=2.2e+02 Score=27.05 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQL 174 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~ql 174 (331)
|+.+|+.+++.......+|...+
T Consensus 82 ~~qeLe~~L~~~~qk~~tl~e~~ 104 (203)
T KOG3433|consen 82 VLQELESQLATGSQKKATLGESI 104 (203)
T ss_pred HHHHHHHHHHHhhhhHhHHHHHH
Confidence 33444444444444444443333
No 409
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=44.58 E-value=2.8e+02 Score=26.30 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQ 196 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLq 196 (331)
|.=|-.+++..++|.+.=..+|-.|..++..+.++.+....++.
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~ 55 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQ 55 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33344444444444443333333333333333333333333333
No 410
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=44.55 E-value=62 Score=33.18 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020103 156 LERKVQTLQTEATTLSAQLTLF 177 (331)
Q Consensus 156 LE~kVq~Lq~ENs~L~~qlt~L 177 (331)
|..+-..|..||+.|+.+++.|
T Consensus 37 Lr~EN~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 37 LRMENHSLKKENNDLKIEVERL 58 (420)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444433
No 411
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=44.27 E-value=1.5e+02 Score=23.02 Aligned_cols=33 Identities=15% Similarity=0.259 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 020103 162 TLQTEATTLSAQLTLFQRDTTDLSTENTELKLR 194 (331)
Q Consensus 162 ~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~R 194 (331)
..+..|-.+..++.....++..|..+-..|+.+
T Consensus 22 kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e 54 (61)
T PF08826_consen 22 KVKSANLAFESKLQEAEKRNRELEQEIERLKKE 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555554444444444433333333
No 412
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=43.83 E-value=1.5e+02 Score=22.87 Aligned_cols=26 Identities=19% Similarity=0.414 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Q 020103 158 RKVQTLQTEATTLSAQLTLFQRDTTD 183 (331)
Q Consensus 158 ~kVq~Lq~ENs~L~~qlt~Lqr~~~~ 183 (331)
.|+.+|..+...|..++..|..+...
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~ 28 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNA 28 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555544443333
No 413
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=43.69 E-value=2e+02 Score=31.86 Aligned_cols=49 Identities=18% Similarity=0.227 Sum_probs=30.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020103 175 TLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVAT 223 (331)
Q Consensus 175 t~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~at 223 (331)
..|-.+.+.|..||..|+-.+.+..|-..--+-.+..|.+|+.++|..+
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea 373 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEA 373 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566778888888887777765554222234555666766666554
No 414
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=43.63 E-value=3.7e+02 Score=28.19 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=27.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 133 KRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQ 178 (331)
Q Consensus 133 KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lq 178 (331)
++.|..|..|.+--..-++...++...+..++.+......++..++
T Consensus 196 ~~~L~~~~~A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk 241 (511)
T PF09787_consen 196 RQELEERPKALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYK 241 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3455556666666555566666666666666666665555555444
No 415
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=43.41 E-value=6e+02 Score=29.75 Aligned_cols=110 Identities=15% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHhhhcCChhHhhhhccCChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Q 020103 110 IEAKKAMDPDKLAELWTVDPKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQ----------- 178 (331)
Q Consensus 110 ~~~Kk~~~~~~LaEla~~D~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lq----------- 178 (331)
.++-|++.++.|-+. -+.++-+-.++.+-.+....|..++..|++.+..|+.+...+..+...+.
T Consensus 165 ~eTekAig~~~ll~~----h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~ 240 (1072)
T KOG0979|consen 165 VETEKAIGAEELLQY----HIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKW 240 (1072)
T ss_pred HHHHHhcCchhhHHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q ss_pred -------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020103 179 -------RDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVAT 223 (331)
Q Consensus 179 -------r~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~at 223 (331)
+.+..+...-..+|..+..++...+-..-..+.|+.++..+....
T Consensus 241 v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~ 292 (1072)
T KOG0979|consen 241 VEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKI 292 (1072)
T ss_pred cchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHH
No 416
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=43.40 E-value=1.6e+02 Score=23.23 Aligned_cols=44 Identities=20% Similarity=0.360 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 155 ELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 155 eLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
.|-.+++.|...|..|...+.....+...|..........+-++
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~al 45 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATAL 45 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 46677788888888888888888888888877666665554444
No 417
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=43.16 E-value=1.4e+02 Score=30.17 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=12.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Q 020103 179 RDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 179 r~~~~L~~EN~eLK~RLqaLEqq 201 (331)
+.+..|..||.+||.++..|+.+
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~ 79 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEER 79 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666665555555444
No 418
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=43.01 E-value=4e+02 Score=27.61 Aligned_cols=17 Identities=18% Similarity=0.219 Sum_probs=6.3
Q ss_pred hHHHHHHHHHHHHHHHH
Q 020103 181 TTDLSTENTELKLRLQA 197 (331)
Q Consensus 181 ~~~L~~EN~eLK~RLqa 197 (331)
...+..+-.+|+.+|+.
T Consensus 147 ~~~~~~~~~~~~~~l~~ 163 (525)
T TIGR02231 147 DREAERRIRELEKQLSE 163 (525)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 419
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=42.81 E-value=1e+02 Score=28.43 Aligned_cols=29 Identities=38% Similarity=0.399 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020103 171 SAQLTLFQRDTTDLSTENTELKLRLQAME 199 (331)
Q Consensus 171 ~~qlt~Lqr~~~~L~~EN~eLK~RLqaLE 199 (331)
..+++.++.....|..+|..|+.+...++
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~~~~~ 138 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQELAITE 138 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555555444443
No 420
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=42.72 E-value=4e+02 Score=27.53 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=36.2
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 129 PKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQL 174 (331)
Q Consensus 129 ~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~ql 174 (331)
.+|..+|..+-+.|...+.+=.++..+.|.++...+.|...+..+-
T Consensus 31 ~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A 76 (445)
T PRK13428 31 AARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEA 76 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888888888888888888888888877766554
No 421
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=42.50 E-value=2.4e+02 Score=24.96 Aligned_cols=15 Identities=13% Similarity=0.364 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHhc
Q 020103 210 EALKKEVERLKVATG 224 (331)
Q Consensus 210 e~Lk~EVqrLk~atg 224 (331)
+.+..++++|++++.
T Consensus 114 ~~~~~ki~~Le~~i~ 128 (146)
T PF08702_consen 114 RSNRQKIQRLEQDID 128 (146)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334456666666554
No 422
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=42.43 E-value=2.5e+02 Score=25.11 Aligned_cols=14 Identities=43% Similarity=0.558 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHh
Q 020103 210 EALKKEVERLKVAT 223 (331)
Q Consensus 210 e~Lk~EVqrLk~at 223 (331)
..|+.+++.+|..+
T Consensus 141 ~~lr~~iE~~K~~~ 154 (177)
T PF07798_consen 141 ANLRTEIESLKWDT 154 (177)
T ss_pred HHHHHHHHHHHHHH
Confidence 35777777776654
No 423
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=42.02 E-value=32 Score=38.69 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020103 150 ARYISELERKVQTLQTEATTLSA 172 (331)
Q Consensus 150 kqyleeLE~kVq~Lq~ENs~L~~ 172 (331)
-+||.+++.++..|+.|...++.
T Consensus 828 ~kql~eykvey~vLq~El~~~~~ 850 (948)
T KOG4436|consen 828 SKQLAEYKVEYHVLQEELTTSSH 850 (948)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 46888899999999888887766
No 424
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=42.01 E-value=3.8e+02 Score=29.23 Aligned_cols=14 Identities=29% Similarity=0.461 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTE 166 (331)
Q Consensus 153 leeLE~kVq~Lq~E 166 (331)
+.+|+.....|..+
T Consensus 169 L~Elq~~Fv~ltne 182 (617)
T PF15070_consen 169 LAELQDAFVKLTNE 182 (617)
T ss_pred HHHHHHHHHHHHHh
Confidence 33443333333333
No 425
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=41.95 E-value=1.7e+02 Score=30.47 Aligned_cols=62 Identities=19% Similarity=0.291 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGE 225 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~atge 225 (331)
++.+||.++..++.....+.. ...+.+++.+++.++.+...-....+.|+..+++|+.....
T Consensus 171 Rl~~L~~qi~~~~~~l~~~~~------------~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~ 232 (475)
T PF10359_consen 171 RLDELEEQIEKHEEKLGELEL------------NPDDPELKSDIEELERHISSLKERIEFLENMLEDLEDSESS 232 (475)
T ss_pred HHHHHHHHHHHHHHhhhcccc------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 345666666665555444332 12233334444444433322223445555666667665443
No 426
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=41.86 E-value=60 Score=31.21 Aligned_cols=39 Identities=41% Similarity=0.553 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020103 147 ERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAME 199 (331)
Q Consensus 147 eRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLE 199 (331)
.|+.+||..|+.+....+.. ++.|..||..|+.||+.|+
T Consensus 101 ~kA~~~i~~l~~~~~~~~~~--------------~e~l~~e~~~l~~rl~ql~ 139 (232)
T KOG2483|consen 101 DKALEHIQSLERKSATQQQD--------------IEDLSRENRKLKARLEQLS 139 (232)
T ss_pred hhHHHHHHHHHhHHHHHHHH--------------HHHHHHHHHHHHHHHHHhc
Confidence 46778888888877665544 4456667778877777664
No 427
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=41.85 E-value=2.4e+02 Score=24.74 Aligned_cols=52 Identities=10% Similarity=0.282 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 150 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 150 kqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
.++|+.|..++.....-......+++.++.+...+..+-..+...+..|+..
T Consensus 67 sqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~k 118 (126)
T PF07889_consen 67 SQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGK 118 (126)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888887777777777788877777777777666666666665443
No 428
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=41.72 E-value=4.8e+02 Score=29.32 Aligned_cols=56 Identities=14% Similarity=0.274 Sum_probs=22.5
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 020103 129 PKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTE 190 (331)
Q Consensus 129 ~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~e 190 (331)
.+|.+-+|+ +-|+|-...+-.|..+--.+....+.|..+++.|+.....-..|+..
T Consensus 301 ~~K~q~LL~------~WREKVFaLmVQLkaQeleh~~~~~qL~~qVAsLQeev~sq~qEqai 356 (739)
T PF07111_consen 301 SRKCQQLLS------RWREKVFALMVQLKAQELEHRDSVKQLRGQVASLQEEVASQQQEQAI 356 (739)
T ss_pred HHHHHHHHH------HHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555443 22333333333333333333333344444444444444333333333
No 429
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=41.41 E-value=2.1e+02 Score=32.38 Aligned_cols=54 Identities=24% Similarity=0.467 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 155 ELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNE 210 (331)
Q Consensus 155 eLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne 210 (331)
.|+.++..+.....++...-..|......|..|-..|+ + +.++++..+++.++.
T Consensus 220 ~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~-~-~~~~~~~~mrd~~~~ 273 (916)
T KOG0249|consen 220 RLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR-R-SSLEKEQELRDHLRT 273 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-H-HHHhhhhhhcchhhh
Confidence 33333333333333333333334444444444444444 2 444444444444433
No 430
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=41.29 E-value=5.7e+02 Score=28.84 Aligned_cols=18 Identities=22% Similarity=0.556 Sum_probs=13.3
Q ss_pred CccccccccccccCCCCC
Q 020103 54 EDDLFCSYMDMDKIGSKP 71 (331)
Q Consensus 54 ~dd~~~~~~d~~~~~s~~ 71 (331)
+=+|+-=|+.|++|+.-+
T Consensus 378 ~i~LMDDFlEmEkLA~~s 395 (769)
T PF05911_consen 378 DIDLMDDFLEMEKLAALS 395 (769)
T ss_pred cHHHHHHHHHHHHHHhcC
Confidence 446788888999997544
No 431
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=40.91 E-value=3.9e+02 Score=26.84 Aligned_cols=76 Identities=26% Similarity=0.271 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHH-----HHHHH--------HHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRD-------TTDLSTENTELKLRLQAMEQQA-----QLRDA--------LNE 210 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~-------~~~L~~EN~eLK~RLqaLEqq~-----qLrda--------lne 210 (331)
.|..-|+..|..|..+-..|..|....+++ +..-+.|-.+++.+++.+.++. ++|.+ +..
T Consensus 101 ~~~rll~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~ 180 (330)
T KOG2991|consen 101 KYTRLLSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFL 180 (330)
T ss_pred cccchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHH
Confidence 455566677777777777777776665544 3334456777777777777664 55555 345
Q ss_pred HHHHHHHHHHHHhccC
Q 020103 211 ALKKEVERLKVATGEM 226 (331)
Q Consensus 211 ~Lk~EVqrLk~atge~ 226 (331)
.|+.|++.-+..+-+.
T Consensus 181 rlK~ele~tk~Klee~ 196 (330)
T KOG2991|consen 181 RLKGELEQTKDKLEEA 196 (330)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6777777666665554
No 432
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=40.80 E-value=2.3e+02 Score=24.21 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=22.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 020103 134 RILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLST 186 (331)
Q Consensus 134 RiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~ 186 (331)
.+...++....+-+.=.+....++.++..+..+...+..++..|..++..+..
T Consensus 31 ~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~ 83 (150)
T PF07200_consen 31 ELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQ 83 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444443
No 433
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=40.72 E-value=1.8e+02 Score=29.56 Aligned_cols=42 Identities=19% Similarity=0.299 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 160 VQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 160 Vq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
|..||..|..|..||...+.++.-|..-|++=-..++.|.|.
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqT 43 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQT 43 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666665555555554444433334444333
No 434
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=40.72 E-value=3.4e+02 Score=26.12 Aligned_cols=100 Identities=25% Similarity=0.364 Sum_probs=56.8
Q ss_pred hcCChhHhhhhccCChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhHHHHHH
Q 020103 114 KAMDPDKLAELWTVDPKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLT------LFQRDTTDLSTE 187 (331)
Q Consensus 114 k~~~~~~LaEla~~D~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt------~Lqr~~~~L~~E 187 (331)
|+.+.+-|.--+..||+-..| ...+..=...|++|..+|..++.|...|..... .-+.....|..-
T Consensus 100 KafSkeGL~~~~k~dp~e~ek--------~e~~~wl~~~Id~L~~QiE~~E~E~E~L~~~~kKkk~~~~~~~r~~~l~~~ 171 (233)
T PF04065_consen 100 KAFSKEGLMAASKLDPKEKEK--------EEARDWLKDSIDELNRQIEQLEAEIESLSSQKKKKKKDSTKQERIEELESR 171 (233)
T ss_pred cccchhhhhcccccCcchHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCccchhHHHHHHHH
Confidence 455555555334456765544 344566677889999999999999888876542 233334445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Q 020103 188 NTELKLRLQAMEQQAQLRDALNEALK-KEVERLKVAT 223 (331)
Q Consensus 188 N~eLK~RLqaLEqq~qLrdalne~Lk-~EVqrLk~at 223 (331)
....+-.+..||+-.++- -|+.|. +.|..|+-.+
T Consensus 172 ierhk~Hi~kLE~lLR~L--~N~~l~~e~V~~ikedi 206 (233)
T PF04065_consen 172 IERHKFHIEKLELLLRLL--DNDELDPEQVEDIKEDI 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHH--HcCCCCHHHHHHHHHHH
Confidence 555555556665543332 233332 4444444444
No 435
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=40.69 E-value=5.6e+02 Score=28.64 Aligned_cols=13 Identities=46% Similarity=0.590 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHh
Q 020103 211 ALKKEVERLKVAT 223 (331)
Q Consensus 211 ~Lk~EVqrLk~at 223 (331)
.|.+|+.+|+..+
T Consensus 605 rleEE~e~L~~kl 617 (698)
T KOG0978|consen 605 RLEEELERLKRKL 617 (698)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 436
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=40.67 E-value=1.3e+02 Score=25.43 Aligned_cols=43 Identities=26% Similarity=0.397 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 020103 154 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQ 196 (331)
Q Consensus 154 eeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLq 196 (331)
.+|..+++-.+.|..-|+..++.+..++..|+.|-+.+|....
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g 46 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYG 46 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5677777777888877777777777777777777766666553
No 437
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=40.62 E-value=1.6e+02 Score=29.11 Aligned_cols=46 Identities=17% Similarity=0.287 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQA 197 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqa 197 (331)
.+.+.+.++..++.....|..++....++...|..+-.....+|..
T Consensus 236 ~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~r 281 (344)
T PF12777_consen 236 QLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLER 281 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3334444444444444444444444444444555555544444443
No 438
>PRK14011 prefoldin subunit alpha; Provisional
Probab=40.61 E-value=1.6e+02 Score=26.20 Aligned_cols=6 Identities=50% Similarity=0.501 Sum_probs=2.4
Q ss_pred HHHHHH
Q 020103 193 LRLQAM 198 (331)
Q Consensus 193 ~RLqaL 198 (331)
.+++.+
T Consensus 127 ~k~~~~ 132 (144)
T PRK14011 127 KRAQAI 132 (144)
T ss_pred HHHHHH
Confidence 334444
No 439
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=40.52 E-value=82 Score=23.88 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 155 ELERKVQTLQTEATTLSAQLTLFQ 178 (331)
Q Consensus 155 eLE~kVq~Lq~ENs~L~~qlt~Lq 178 (331)
....++..|+.||..|.+++..++
T Consensus 26 ~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 26 AARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555666666666655443
No 440
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=40.25 E-value=1e+02 Score=30.59 Aligned_cols=51 Identities=24% Similarity=0.279 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTL-------FQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~-------Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
..+.++|.+|+.|+.-|..|.++++. +-..-..+.+|-..++.+|..|+..
T Consensus 217 dRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~kmeE~ 274 (311)
T PF04642_consen 217 DRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKKMEEE 274 (311)
T ss_pred HHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhcccHH
Confidence 45678999999999999999999832 2233345666777777777777654
No 441
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=40.05 E-value=38 Score=29.60 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=18.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020103 174 LTLFQRDTTDLSTENTELKLRLQAME 199 (331)
Q Consensus 174 lt~Lqr~~~~L~~EN~eLK~RLqaLE 199 (331)
+..|..+...|..||..||.+|..--
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 34455566678899999999886543
No 442
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=39.97 E-value=3.6e+02 Score=26.11 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020103 155 ELERKVQTLQTEATTLSAQL 174 (331)
Q Consensus 155 eLE~kVq~Lq~ENs~L~~ql 174 (331)
.++.++..++.+...+..++
T Consensus 155 ~~~~~i~~~~~~l~~~~~~l 174 (423)
T TIGR01843 155 QLEAELAGLQAQLQALRQQL 174 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 443
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=39.94 E-value=94 Score=31.09 Aligned_cols=9 Identities=11% Similarity=0.390 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 020103 159 KVQTLQTEA 167 (331)
Q Consensus 159 kVq~Lq~EN 167 (331)
++++|+..+
T Consensus 16 ~~~~~~~~~ 24 (389)
T PRK03992 16 QIRQLELKL 24 (389)
T ss_pred HHHHHHHHH
Confidence 333333333
No 444
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=39.80 E-value=3.3e+02 Score=25.67 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=12.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 134 RILANRQSAARSKERKARYISELER 158 (331)
Q Consensus 134 RiLaNRESArRSReRKkqyleeLE~ 158 (331)
+.+.+--.|+.+|-||. |.+||.
T Consensus 98 ~Rm~~qL~~aE~rhrr~--i~eLe~ 120 (192)
T PF09727_consen 98 RRMLEQLAAAEKRHRRT--IQELEE 120 (192)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHH
Confidence 33444455666666655 455554
No 445
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=39.79 E-value=6.1e+02 Score=29.79 Aligned_cols=89 Identities=21% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhHHHHH
Q 020103 131 RAKRILANRQSAARSK----------ERKARYISELERKVQTLQTE--------------ATTLSAQLTLFQRDTTDLST 186 (331)
Q Consensus 131 R~KRiLaNRESArRSR----------eRKkqyleeLE~kVq~Lq~E--------------Ns~L~~qlt~Lqr~~~~L~~ 186 (331)
+.+|-+.+.+-.+... .|+.+..+..-.+.+.+..+ |..|+.++....++...+..
T Consensus 207 ~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~ 286 (1109)
T PRK10929 207 RLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQSGDLPKSIVAQFKINRELSQALNQQAQRMDLIAS 286 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH-HHHHH---------HHHHHHHHHHHH
Q 020103 187 ENTELKLRLQAMEQQA-QLRDA---------LNEALKKEVERL 219 (331)
Q Consensus 187 EN~eLK~RLqaLEqq~-qLrda---------lne~Lk~EVqrL 219 (331)
+|...|.++..+.|.. .+++- +-+.|.+..++|
T Consensus 287 ~~~~~~~~l~~~~q~~~~i~eQi~~l~~S~~Lg~~L~~Q~~~L 329 (1109)
T PRK10929 287 QQRQAASQTLQVRQALNTLREQSQWLGVSNALGEALRAQVARL 329 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhC
No 446
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.75 E-value=4.4e+02 Score=27.12 Aligned_cols=86 Identities=16% Similarity=0.261 Sum_probs=46.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Q 020103 136 LANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLF--QRDTTDLSTENTELKLRLQAMEQQAQLR----DALN 209 (331)
Q Consensus 136 LaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~L--qr~~~~L~~EN~eLK~RLqaLEqq~qLr----daln 209 (331)
+..=+++-..|.+..+-+.+++..+.........+...+..+ .........+...+..++..++.+..++ +.++
T Consensus 372 ~~~~k~~~~~r~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~k~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~ 451 (503)
T KOG2273|consen 372 LESVKSLFEQRSKALQKLQEAQRELSSKKEQLSKLKKKNRSSFGFDKIDLAEKEIEKLEEKVNELEELLALKELELDEIS 451 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 333344444455555555555555555555555555554331 2233445566666666777766444332 1467
Q ss_pred HHHHHHHHHHHH
Q 020103 210 EALKKEVERLKV 221 (331)
Q Consensus 210 e~Lk~EVqrLk~ 221 (331)
+.++.|+++++.
T Consensus 452 ~~~~~e~~~f~~ 463 (503)
T KOG2273|consen 452 ERIRAELERFEE 463 (503)
T ss_pred HHHHHHHHHHHH
Confidence 777788777754
No 447
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=39.74 E-value=2.4e+02 Score=24.11 Aligned_cols=9 Identities=33% Similarity=0.693 Sum_probs=4.1
Q ss_pred CChhHhhhh
Q 020103 116 MDPDKLAEL 124 (331)
Q Consensus 116 ~~~~~LaEl 124 (331)
++.+.|.+|
T Consensus 4 lS~~eL~~L 12 (150)
T PF07200_consen 4 LSTEELQEL 12 (150)
T ss_dssp -TTHHHHHH
T ss_pred CCHHHHHHH
Confidence 444555554
No 448
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=39.71 E-value=4.3e+02 Score=26.96 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 020103 148 RKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDL 184 (331)
Q Consensus 148 RKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L 184 (331)
|=+..-+.+|.|+..|+.+|.-+..+-..++.+|...
T Consensus 30 ~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~qyrec 66 (328)
T PF15369_consen 30 RLKAEQESFEKKIRQLEEQNELIIKEREDLQQQYREC 66 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3344556777777777777777777777666655443
No 449
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=39.57 E-value=1.6e+02 Score=24.32 Aligned_cols=51 Identities=24% Similarity=0.274 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTL---FQRDTTDLSTENTELKLRLQAMEQQA 202 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~---Lqr~~~~L~~EN~eLK~RLqaLEqq~ 202 (331)
.|+.||.++.........+..++.. -..+...|+.|-..|+.++...|.+.
T Consensus 6 eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL 59 (85)
T PF15188_consen 6 EIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKEL 59 (85)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHH
Confidence 3555666665555555444444421 11234456666666666666665554
No 450
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.51 E-value=3.8e+02 Score=27.00 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020103 155 ELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATG 224 (331)
Q Consensus 155 eLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~atg 224 (331)
.|-.++..+.+-.+.|..++..+++. +....++|-..|..+....-.-+.-.+.|+.|+..+|..+-
T Consensus 126 ~Ld~~~~~~~~~~~~l~~~va~v~q~---~~~qq~Els~~L~~l~~~~~~~s~~~~k~esei~~Ik~lvl 192 (300)
T KOG2629|consen 126 QLDDQFDKAAKSLNALMDEVAQVSQL---LATQQSELSRALASLKNTLVQLSRNIEKLESEINTIKQLVL 192 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Confidence 33344444444444444444433332 23333355555555444432223445567788888886543
No 451
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=39.47 E-value=52 Score=28.31 Aligned_cols=27 Identities=22% Similarity=0.470 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 172 AQLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 172 ~qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
..+..++++...|..||+-||.+++.|
T Consensus 72 ~e~~rlkkk~~~LeEENNlLklKievL 98 (108)
T cd07429 72 REVLRLKKKNQQLEEENNLLKLKIEVL 98 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
No 452
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=39.40 E-value=2.5e+02 Score=30.48 Aligned_cols=20 Identities=30% Similarity=0.313 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 020103 204 LRDALNEALKKEVERLKVAT 223 (331)
Q Consensus 204 Lrdalne~Lk~EVqrLk~at 223 (331)
++..-.+.|++|.++|+...
T Consensus 563 ~k~~~l~~L~~En~~L~~~l 582 (722)
T PF05557_consen 563 IKKSTLEALQAENEDLLARL 582 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44456788889999988766
No 453
>PRK01156 chromosome segregation protein; Provisional
Probab=39.38 E-value=5.6e+02 Score=28.24 Aligned_cols=8 Identities=0% Similarity=0.181 Sum_probs=3.6
Q ss_pred cccCCCCC
Q 020103 28 QYRIPDDM 35 (331)
Q Consensus 28 ~~~~~~~~ 35 (331)
.+.|.+.+
T Consensus 18 ~i~f~~gi 25 (895)
T PRK01156 18 EIEFDTGI 25 (895)
T ss_pred eEecCCCe
Confidence 34455444
No 454
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=39.35 E-value=3.4e+02 Score=25.69 Aligned_cols=8 Identities=50% Similarity=1.128 Sum_probs=5.7
Q ss_pred cccCCCCC
Q 020103 28 QYRIPDDM 35 (331)
Q Consensus 28 ~~~~~~~~ 35 (331)
-+|+|..+
T Consensus 18 G~rIPr~v 25 (195)
T PF12761_consen 18 GYRIPREV 25 (195)
T ss_pred CCcCCccC
Confidence 57788765
No 455
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=39.33 E-value=4.1e+02 Score=26.64 Aligned_cols=89 Identities=25% Similarity=0.408 Sum_probs=50.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 020103 130 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA-QLRDAL 208 (331)
Q Consensus 130 KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~-qLrdal 208 (331)
+..|.-+.+..++.+++.+ +|-.+|..+......|..+-..+..+...+..+-.++-..++.+.... .++...
T Consensus 26 ~ekR~El~~~~~~~~ekRd------eln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~ 99 (294)
T COG1340 26 KEKRDELRKEASELAEKRD------ELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKR 99 (294)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344567777777776654 344455555555555555555555555555555666666666555543 333333
Q ss_pred H---------HHHHHHHHHHHHHhc
Q 020103 209 N---------EALKKEVERLKVATG 224 (331)
Q Consensus 209 n---------e~Lk~EVqrLk~atg 224 (331)
+ ..|..++++|....-
T Consensus 100 ~~~~~~~~~~~~ler~i~~Le~~~~ 124 (294)
T COG1340 100 NEFNLGGRSIKSLEREIERLEKKQQ 124 (294)
T ss_pred hhhhccCCCHHHHHHHHHHHHHHHH
Confidence 3 457788999865543
No 456
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=39.19 E-value=4.3e+02 Score=31.06 Aligned_cols=55 Identities=22% Similarity=0.231 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 144 RSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 144 RSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
.|++|.......|...+..+....+.+...+..++..+..+..+-.++...|...
T Consensus 416 ~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~ 470 (1141)
T KOG0018|consen 416 ESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEV 470 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3444444444445555555555444444444444444444444444444444443
No 457
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=39.12 E-value=1.9e+02 Score=29.53 Aligned_cols=6 Identities=50% Similarity=0.711 Sum_probs=2.3
Q ss_pred HHHHHH
Q 020103 214 KEVERL 219 (331)
Q Consensus 214 ~EVqrL 219 (331)
++++++
T Consensus 403 ~~l~~~ 408 (451)
T PF03961_consen 403 EELERS 408 (451)
T ss_pred HHHHhh
Confidence 333333
No 458
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=38.93 E-value=7.3e+02 Score=29.44 Aligned_cols=40 Identities=13% Similarity=0.050 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 141 SAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRD 180 (331)
Q Consensus 141 SArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~ 180 (331)
.|.+....-++++++++..+...+.+...+..++..+..+
T Consensus 872 ~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~ 911 (1353)
T TIGR02680 872 HAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLR 911 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555555555444444444333
No 459
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=38.88 E-value=3.3e+02 Score=25.36 Aligned_cols=30 Identities=33% Similarity=0.496 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 020103 187 ENTELKLRLQAMEQQA-QLRDALNEALKKEV 216 (331)
Q Consensus 187 EN~eLK~RLqaLEqq~-qLrdalne~Lk~EV 216 (331)
.-..++.+++.++... .|++.+|..-..+.
T Consensus 186 qrdl~~~~~~~l~~~l~~Lq~~ln~~R~~ea 216 (240)
T PF12795_consen 186 QRDLLKARIQRLQQQLQALQNLLNQKRRQEA 216 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455554443 44555555544333
No 460
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=38.83 E-value=3.9e+02 Score=26.24 Aligned_cols=35 Identities=14% Similarity=0.356 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 144 RSKERKARYISELERKVQTLQTEATTLSAQLTLFQ 178 (331)
Q Consensus 144 RSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lq 178 (331)
.-.++-...+..|+.+|..|.+.+.....++..|.
T Consensus 74 e~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~ 108 (258)
T PF15397_consen 74 EWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLS 108 (258)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666666666666666666655443
No 461
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=38.68 E-value=4.4e+02 Score=26.78 Aligned_cols=68 Identities=15% Similarity=0.212 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 154 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTE---LKLRLQAMEQQAQLRDALNEALKKEVERLKV 221 (331)
Q Consensus 154 eeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~e---LK~RLqaLEqq~qLrdalne~Lk~EVqrLk~ 221 (331)
.+|...+..++.+...|..++..++++...+..+-.. ...++..|+.+......+.+.|.+-.+..+.
T Consensus 313 ~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~ 383 (498)
T TIGR03007 313 QQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEV 383 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555554444433221 2234445555555554555555444444333
No 462
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=38.65 E-value=5.9e+02 Score=29.36 Aligned_cols=72 Identities=28% Similarity=0.340 Sum_probs=42.1
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-------------HHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 020103 129 PKRAKRILANRQSAARSKERKARYISELERKVQTLQT-EA-------------TTLSAQLTLFQRDTTDLSTENTELKLR 194 (331)
Q Consensus 129 ~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~-EN-------------s~L~~qlt~Lqr~~~~L~~EN~eLK~R 194 (331)
.||+.--.+-|+.-+.-+++++....+++.++.+++. +. ..|-. =+..+++...|..|+.+|..|
T Consensus 607 ~kRl~ee~~Ere~~R~l~E~e~i~~k~~ke~~~~~~~te~~aK~~k~~d~ed~e~lD~-d~i~~~q~eel~Ke~kElq~r 685 (988)
T KOG2072|consen 607 EKRLIEEKKEREAKRILREKEAIRKKELKERLEQLKQTEVGAKGGKEKDLEDLEKLDA-DQIKARQIEELEKERKELQSR 685 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChHHhhhcCH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555666666666665566666666665551 11 11111 134456778888999999988
Q ss_pred HHHHHHH
Q 020103 195 LQAMEQQ 201 (331)
Q Consensus 195 LqaLEqq 201 (331)
|+..+..
T Consensus 686 L~~q~Kk 692 (988)
T KOG2072|consen 686 LQYQEKK 692 (988)
T ss_pred HHHHHhh
Confidence 8876544
No 463
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=38.63 E-value=4.2e+02 Score=26.60 Aligned_cols=20 Identities=40% Similarity=0.381 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020103 154 SELERKVQTLQTEATTLSAQ 173 (331)
Q Consensus 154 eeLE~kVq~Lq~ENs~L~~q 173 (331)
..|-.|+..|+.||..|-.+
T Consensus 213 K~LMAKCR~L~qENeElG~q 232 (330)
T KOG2991|consen 213 KMLMAKCRTLQQENEELGHQ 232 (330)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45777888888888776554
No 464
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=38.61 E-value=5.6e+02 Score=30.63 Aligned_cols=8 Identities=38% Similarity=0.829 Sum_probs=4.1
Q ss_pred ccCCCCCC
Q 020103 29 YRIPDDMD 36 (331)
Q Consensus 29 ~~~~~~~~ 36 (331)
|.|||+++
T Consensus 300 l~FP~~~~ 307 (1317)
T KOG0612|consen 300 LSFPDETD 307 (1317)
T ss_pred cCCCcccc
Confidence 55665443
No 465
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=38.59 E-value=2.4e+02 Score=30.30 Aligned_cols=47 Identities=15% Similarity=0.254 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020103 156 LERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA 202 (331)
Q Consensus 156 LE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~ 202 (331)
.+.|+..+..|+..|..++...+++...+..|..+++.++..|+.+.
T Consensus 432 adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL 478 (518)
T PF10212_consen 432 ADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDEL 478 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666666666666666666655543
No 466
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=38.55 E-value=1.3e+02 Score=31.94 Aligned_cols=56 Identities=21% Similarity=0.240 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020103 169 TLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATG 224 (331)
Q Consensus 169 ~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~atg 224 (331)
.|...+..|++++..|+..+++|++|+........--..+...+..|-+.-+.+.+
T Consensus 410 el~e~le~Lq~Q~eeL~e~~n~l~qrI~eer~~v~~lkql~~~~q~e~t~ak~~~q 465 (514)
T KOG4370|consen 410 ELQEILELLQRQNEELEEKVNHLNQRIAEERERVIELKQLVNLLQEENTNAKQQFQ 465 (514)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhc
Confidence 46666778888888888888888888877644432222344444444333344333
No 467
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=38.51 E-value=2.9e+02 Score=29.19 Aligned_cols=87 Identities=9% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 140 QSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRD----------TTDLSTENTELKLRLQAMEQQAQLRDALN 209 (331)
Q Consensus 140 ESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~----------~~~L~~EN~eLK~RLqaLEqq~qLrdaln 209 (331)
+.....|..=.+.+..++..+.+++..|..|..++..++.. ...+..+-..|..++..+.....-...-.
T Consensus 299 ekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~y 378 (569)
T PRK04778 299 EREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAY 378 (569)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCH
Q ss_pred HHHHHHHHHHHHHhccC
Q 020103 210 EALKKEVERLKVATGEM 226 (331)
Q Consensus 210 e~Lk~EVqrLk~atge~ 226 (331)
+.+.+++..+....-.+
T Consensus 379 sel~e~leel~e~leei 395 (569)
T PRK04778 379 SELQEELEEILKQLEEI 395 (569)
T ss_pred HHHHHHHHHHHHHHHHH
No 468
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=38.49 E-value=4.8e+02 Score=27.46 Aligned_cols=42 Identities=19% Similarity=0.337 Sum_probs=21.5
Q ss_pred CChHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 020103 127 VDPKRAKRILANRQSAARSKERKAR-YISELERKVQTLQTEATT 169 (331)
Q Consensus 127 ~D~KR~KRiLaNRESArRSReRKkq-yleeLE~kVq~Lq~ENs~ 169 (331)
.||.++-. +.+|.+.-+.-.||.. -++++-...+.++.+...
T Consensus 298 ~dp~~L~e-le~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~ 340 (563)
T TIGR00634 298 FDPERLNE-IEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQ 340 (563)
T ss_pred CCHHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 45666555 5566666666555543 344444444444444433
No 469
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=38.47 E-value=2.1e+02 Score=22.99 Aligned_cols=33 Identities=27% Similarity=0.372 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 020103 156 LERKVQTLQTEATTLSAQLTLFQRDTTDLSTEN 188 (331)
Q Consensus 156 LE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN 188 (331)
|...|..|..|...|..++...+.++..+..+.
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~ 33 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888888888888887777766555544
No 470
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=38.43 E-value=3.6e+02 Score=25.72 Aligned_cols=46 Identities=24% Similarity=0.327 Sum_probs=37.6
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 129 PKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQL 174 (331)
Q Consensus 129 ~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~ql 174 (331)
.+|.++|..+-+.|...+..=++...+.+.+++.++.+...+..+.
T Consensus 35 ~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A 80 (250)
T PRK14474 35 KKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQA 80 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888888888988888888888888888888888887776554
No 471
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=38.36 E-value=1.7e+02 Score=28.33 Aligned_cols=14 Identities=29% Similarity=0.188 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHH
Q 020103 147 ERKARYISELERKV 160 (331)
Q Consensus 147 eRKkqyleeLE~kV 160 (331)
+-=..|-.-+|.-|
T Consensus 160 Mt~aAYqtlyeSsv 173 (259)
T KOG4001|consen 160 MTFAAYQTLYESSV 173 (259)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445666666555
No 472
>PRK14161 heat shock protein GrpE; Provisional
Probab=38.35 E-value=3.2e+02 Score=25.12 Aligned_cols=64 Identities=20% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 150 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKK 214 (331)
Q Consensus 150 kqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~ 214 (331)
+.-+.=|+.-|..++.+...|..++..++.++..+.+|-..+|.|.+.=..+.+-. +.-..++.
T Consensus 11 ~~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~-a~~~~~~~ 74 (178)
T PRK14161 11 QTINDIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDY-AIATFAKE 74 (178)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
No 473
>PF08703 PLC-beta_C: PLC-beta C terminal; InterPro: IPR014815 This domain corresponds to the alpha helical C-terminal domain of phospholipase C beta. ; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1JAD_A.
Probab=38.35 E-value=3.4e+02 Score=25.40 Aligned_cols=90 Identities=26% Similarity=0.301 Sum_probs=0.0
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020103 128 DPKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLS-----AQLTLFQRDTTDLSTENTELKLRLQAMEQQA 202 (331)
Q Consensus 128 D~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~-----~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~ 202 (331)
|....-+-|.+++...-...|+.+|..+.+.+.+++......|. .+.+.|..=...+..|..+|+..|+.=....
T Consensus 4 e~~~~~~eL~~~q~~eL~~l~~eq~~~e~e~ke~H~~e~~~kl~el~~e~Q~~QlK~LKe~~EkE~KElkK~L~~kr~e~ 83 (185)
T PF08703_consen 4 EMDQRVRELKEKQEQELLKLREEQYESEKELKEEHLKEQFQKLEELARECQAAQLKKLKETCEKETKELKKKLDRKRLES 83 (185)
T ss_dssp -TS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHH
Q ss_pred HHHHH------HHHHHHHHHHH
Q 020103 203 QLRDA------LNEALKKEVER 218 (331)
Q Consensus 203 qLrda------lne~Lk~EVqr 218 (331)
.- ++ ..+.++.||.+
T Consensus 84 I~-~k~~~dK~e~er~KrEin~ 104 (185)
T PF08703_consen 84 IK-EKKTKDKDEQERLKREINR 104 (185)
T ss_dssp HH-HTT---HHHHHHHHHHHHH
T ss_pred HH-HhhcccHHHHHHHHHHHHH
No 474
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=38.16 E-value=1.5e+02 Score=31.38 Aligned_cols=51 Identities=18% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020103 147 ERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQA 197 (331)
Q Consensus 147 eRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqa 197 (331)
++|+..++.+...+..++.....+..++..++-+...|...-++||..++.
T Consensus 442 ~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 442 QQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
No 475
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=37.88 E-value=2.2e+02 Score=23.63 Aligned_cols=56 Identities=20% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 020103 159 KVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQL-RDALNEALKK 214 (331)
Q Consensus 159 kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qL-rdalne~Lk~ 214 (331)
++..++.+|.+|.+++..++.+.....++-...+.+-.-=|....+ |+.+.+.|..
T Consensus 24 k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqknee~~~~~sr~~V~d~L~q 80 (87)
T PF10883_consen 24 KVKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKNEENTRRLSRDSVIDQLQQ 80 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCHHHHHHHHHH
No 476
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=37.73 E-value=1.7e+02 Score=23.92 Aligned_cols=43 Identities=19% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020103 149 KARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTEL 191 (331)
Q Consensus 149 KkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eL 191 (331)
+..-+..|+.++..++.+...|..++..++.+...+..+-.+|
T Consensus 61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 61 KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 477
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=37.65 E-value=72 Score=27.47 Aligned_cols=37 Identities=22% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTE 187 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~E 187 (331)
..+..|.++.++|+.||+-|+-++..|-.-.+...+|
T Consensus 72 ~e~~rlkkk~~~LeEENNlLklKievLLDMLtettae 108 (108)
T cd07429 72 REVLRLKKKNQQLEEENNLLKLKIEVLLDMLAETTAE 108 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 478
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=37.45 E-value=6.2e+02 Score=28.14 Aligned_cols=83 Identities=18% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 140 QSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERL 219 (331)
Q Consensus 140 ESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrL 219 (331)
++.+.-|+ +|+..++.--..++.....|..+...-..+...+..+-..|+.+.+.|...-.-....-+.|.+-+++|
T Consensus 543 ~a~~vlre---eYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~v 619 (717)
T PF10168_consen 543 QATKVLRE---EYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRV 619 (717)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhcc
Q 020103 220 KVATGE 225 (331)
Q Consensus 220 k~atge 225 (331)
......
T Consensus 620 l~~l~~ 625 (717)
T PF10168_consen 620 LQLLNS 625 (717)
T ss_pred HHHHhc
No 479
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=37.34 E-value=4.2e+02 Score=26.23 Aligned_cols=82 Identities=16% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 132 AKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEA 211 (331)
Q Consensus 132 ~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~ 211 (331)
.+.+....+.+..-++.+.+-++..+.++..++.+......++..++.+...+...-.+|+..-..|....-......+.
T Consensus 181 a~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~k 260 (269)
T PF05278_consen 181 AKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEK 260 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 020103 212 LK 213 (331)
Q Consensus 212 Lk 213 (331)
+.
T Consensus 261 f~ 262 (269)
T PF05278_consen 261 FH 262 (269)
T ss_pred hc
No 480
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=37.27 E-value=3.1e+02 Score=33.84 Aligned_cols=73 Identities=19% Similarity=0.331 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 147 ERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERL 219 (331)
Q Consensus 147 eRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrL 219 (331)
.|++..|+.|+..+..|..++..+...+..++...+....+-..++.++..|+|..-+-..-+.+|..|....
T Consensus 132 e~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~ 204 (1822)
T KOG4674|consen 132 ERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKV 204 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
No 481
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=37.20 E-value=4.2e+02 Score=29.03 Aligned_cols=97 Identities=22% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q 020103 143 ARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRD----------TTDLSTENTELKLRLQAMEQQA--QLRDALNE 210 (331)
Q Consensus 143 rRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~----------~~~L~~EN~eLK~RLqaLEqq~--qLrdalne 210 (331)
..+-.|=|.....|..++..|+.|..+|..+-+.++|. +.--+....|+.+||+++=.|. .|..-...
T Consensus 22 ~etldRIKdEfqflqaqyhslkleceKlA~EKteMqRhYvmYyEmSygLniemhKq~EI~KRLn~i~aQl~PfLsqehQq 101 (705)
T KOG0639|consen 22 LETLDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYVMYYEMSYGLNIEMHKQTEIAKRLNTICAQLIPFLSQEHQQ 101 (705)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhheeeeeeeccccchhhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCCCCCC
Q 020103 211 ALKKEVERLKVATGEMMTPTDTYNLGMQPIP 241 (331)
Q Consensus 211 ~Lk~EVqrLk~atge~~~~~~~f~~~~~q~~ 241 (331)
.+-.-|+|.|++|..-..++.+ .-.++++
T Consensus 102 qvlqAvEraKqvT~~eln~iig--~qaq~ls 130 (705)
T KOG0639|consen 102 QVLQAVERAKQVTMSELNAIIG--LQAQHLS 130 (705)
T ss_pred HHHHHHHHHhhcchhhhhhhcc--cccccCC
No 482
>PHA03155 hypothetical protein; Provisional
Probab=37.18 E-value=43 Score=29.23 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHH
Q 020103 174 LTLFQRDTTDLSTENTELKLRL 195 (331)
Q Consensus 174 lt~Lqr~~~~L~~EN~eLK~RL 195 (331)
+..|..+...|..||..||.+|
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl 31 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKL 31 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 483
>PHA03162 hypothetical protein; Provisional
Probab=37.15 E-value=42 Score=30.01 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHH
Q 020103 174 LTLFQRDTTDLSTENTELKLRL 195 (331)
Q Consensus 174 lt~Lqr~~~~L~~EN~eLK~RL 195 (331)
+..|..+...|..||..||.+|
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 484
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=37.14 E-value=4.1e+02 Score=26.80 Aligned_cols=69 Identities=22% Similarity=0.355 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 020103 150 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGE 225 (331)
Q Consensus 150 kqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~atge 225 (331)
+..+.|-|.+++.=++|+..|+.|+.-+++++ ++.|=.....+|..-|..+-|+ -|+.=|+-+|.-+++
T Consensus 74 kakLkes~~~l~dRetEI~eLksQL~RMrEDW--IEEECHRVEAQLALKEARkEIk-----QLkQvieTmrssL~e 142 (305)
T PF15290_consen 74 KAKLKESENRLHDRETEIDELKSQLARMREDW--IEEECHRVEAQLALKEARKEIK-----QLKQVIETMRSSLAE 142 (305)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhch
No 485
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=37.00 E-value=7.2e+02 Score=29.81 Aligned_cols=95 Identities=16% Similarity=0.230 Sum_probs=0.0
Q ss_pred cCChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020103 126 TVDPKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLS--------AQLTLFQRDTTDLSTENTELKLRLQA 197 (331)
Q Consensus 126 ~~D~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~--------~qlt~Lqr~~~~L~~EN~eLK~RLqa 197 (331)
+.+.-..++.+.++..|.. .+..-..+|+..+..++.+...|. .++...+++......+.+.|+.++..
T Consensus 443 l~~~~~~~~~~~~~~~~~~---~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~ 519 (1317)
T KOG0612|consen 443 LVNEMQEKEKLDEKCQAVA---ELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQ 519 (1317)
T ss_pred hhhHHHHhhhHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHh
Q 020103 198 MEQQAQLRDALNEAL---KKEVERLKVAT 223 (331)
Q Consensus 198 LEqq~qLrdalne~L---k~EVqrLk~at 223 (331)
++.+.......+..+ .+.|..++..+
T Consensus 520 ~~eele~~q~~~~~~~~~~~kv~~~rk~l 548 (1317)
T KOG0612|consen 520 LEEELEDAQKKNDNAADSLEKVNSLRKQL 548 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
No 486
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=36.93 E-value=5.9e+02 Score=27.78 Aligned_cols=100 Identities=21% Similarity=0.355 Sum_probs=0.0
Q ss_pred ChHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHH
Q 020103 128 DPKRAKRILAN------RQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDT--TDLSTENTELKLRLQAME 199 (331)
Q Consensus 128 D~KR~KRiLaN------RESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~--~~L~~EN~eLK~RLqaLE 199 (331)
||.++.+++.- ++.-.+-...-.+-++-|+.++..++.+......++...++++ ..+..|...+..++..++
T Consensus 238 dP~~Aa~ilN~la~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~ 317 (726)
T PRK09841 238 DPQLITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVD 317 (726)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Q ss_pred HHHHHHH---------------------HHHHHHHHHHHHHHHHhccCC
Q 020103 200 QQAQLRD---------------------ALNEALKKEVERLKVATGEMM 227 (331)
Q Consensus 200 qq~qLrd---------------------alne~Lk~EVqrLk~atge~~ 227 (331)
.|..... .....|++++.+++.....++
T Consensus 318 ~ql~~l~~~~~~l~~~~~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~~p 366 (726)
T PRK09841 318 NQLNELTFREAEISQLYKKDHPTYRALLEKRQTLEQERKRLNKRVSAMP 366 (726)
T ss_pred HHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHHHhcc
No 487
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=36.93 E-value=1.1e+02 Score=31.10 Aligned_cols=43 Identities=14% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 020103 150 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELK 192 (331)
Q Consensus 150 kqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK 192 (331)
..++.+|+.++..|+.++..|..++..++++...+..|...|+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 21 YEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 488
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=36.68 E-value=2.9e+02 Score=24.11 Aligned_cols=97 Identities=16% Similarity=0.209 Sum_probs=0.0
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHH-HHHHHHHHHHHHHHH-HHH
Q 020103 129 PKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQL-TLFQRDTTDLSTE-NTELKLRLQAMEQQA-QLR 205 (331)
Q Consensus 129 ~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~ql-t~Lqr~~~~L~~E-N~eLK~RLqaLEqq~-qLr 205 (331)
.+|..++..+-+.|.+.|..=.+...+.|.++...+.+...+..+. ...++....+..+ +.+....+...+.+. .-+
T Consensus 38 ~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek 117 (164)
T PRK14471 38 KEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILKEAREIKEKMIADAKEEAQVEGDKMIEQAKASIESEK 117 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 020103 206 DALNEALKKEVERLKVATGE 225 (331)
Q Consensus 206 dalne~Lk~EVqrLk~atge 225 (331)
......|+.++..|-+.+..
T Consensus 118 ~~a~~~l~~~i~~la~~~a~ 137 (164)
T PRK14471 118 NAAMAEIKNQVANLSVEIAE 137 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 489
>PRK15396 murein lipoprotein; Provisional
Probab=36.62 E-value=2.3e+02 Score=23.00 Aligned_cols=46 Identities=24% Similarity=0.362 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
++.|..+|+.|..+...|...+..++........|-..--+||..+
T Consensus 27 vd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~ 72 (78)
T PRK15396 27 IDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=36.46 E-value=1.8e+02 Score=26.12 Aligned_cols=45 Identities=20% Similarity=0.341 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQA 197 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqa 197 (331)
++.|..+++.|......|...++.|.+....+..+++++-.+...
T Consensus 96 ie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~ 140 (145)
T COG1730 96 IEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAA 140 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=36.24 E-value=2e+02 Score=26.34 Aligned_cols=52 Identities=15% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhHHHHHHHHHHHHHHHHHHHH
Q 020103 150 ARYISELERKVQTLQTEATTLSAQLTLFQ-----RDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 150 kqyleeLE~kVq~Lq~ENs~L~~qlt~Lq-----r~~~~L~~EN~eLK~RLqaLEqq 201 (331)
.++.+.|+.+++.|+.....+...+..++ ++.+.+...-..|.++|..+|+.
T Consensus 91 e~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~~ 147 (175)
T PRK13182 91 EAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLEPI 147 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
No 492
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=36.24 E-value=5.5e+02 Score=27.22 Aligned_cols=94 Identities=16% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHH
Q 020103 131 RAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA----QLRD 206 (331)
Q Consensus 131 R~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~----qLrd 206 (331)
+..+...-.++-...+.+|.+.-.+++.+-+.|...-..|..+...|.++...|......|..+-+.++... .+..
T Consensus 46 ke~~ke~~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~ 125 (514)
T TIGR03319 46 ETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEE 125 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 020103 207 ALNEALKKEVERLKVATG 224 (331)
Q Consensus 207 alne~Lk~EVqrLk~atg 224 (331)
.+.+...+.+..|...+|
T Consensus 126 e~~~~~~~~~~~le~~a~ 143 (514)
T TIGR03319 126 ELEELIAEQREELERISG 143 (514)
T ss_pred HHHHHHHHHHHHHHHHhC
No 493
>PRK14154 heat shock protein GrpE; Provisional
Probab=36.22 E-value=2.4e+02 Score=26.70 Aligned_cols=55 Identities=9% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 159 KVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKK 214 (331)
Q Consensus 159 kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~ 214 (331)
.+..|+.+...|..++..++.++..+.++-..+|.|.+.-..+.+-. +.-..++.
T Consensus 53 ~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~-a~e~~~~~ 107 (208)
T PRK14154 53 SREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKF-GSKQLITD 107 (208)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
No 494
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=36.22 E-value=3.1e+02 Score=32.59 Aligned_cols=77 Identities=19% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020103 147 ERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVAT 223 (331)
Q Consensus 147 eRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~at 223 (331)
.|...+......+.++...+...+..++..++.++..+..+...++..+..-+........|+..|..|..+.....
T Consensus 937 ~~~e~~~~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~a~~Li~~Ls~e~~rW~~~~ 1013 (1395)
T KOG3595|consen 937 ARLEAELKAAMKELEEKSAELQDLEEKLQRLKDEYEQLIAEKQELEEDMDACELKLLRAEELIQGLSGEKERWSETS 1013 (1395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
No 495
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=36.07 E-value=3.3e+02 Score=24.53 Aligned_cols=86 Identities=15% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 020103 150 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEMMTP 229 (331)
Q Consensus 150 kqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~atge~~~~ 229 (331)
++-+-.|..+-.+|.+.--..++.+.-++++ ..|+.+|.+|.++|..|.++.---.-..++++.-.++|-.-+-.+...
T Consensus 46 reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk-~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~~~~~~ 124 (135)
T KOG4196|consen 46 REEVVRLKQRRRTLKNRGYAQSCRVKRVQQK-HELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSAVSVGAS 124 (135)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q ss_pred CCCCCCC
Q 020103 230 TDTYNLG 236 (331)
Q Consensus 230 ~~~f~~~ 236 (331)
+...+..
T Consensus 125 ~~~pS~p 131 (135)
T KOG4196|consen 125 PVSPSSP 131 (135)
T ss_pred CCCCccc
No 496
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=35.94 E-value=3.9e+02 Score=25.42 Aligned_cols=73 Identities=19% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKL----RLQAMEQQAQLRDALNEALKKEVERLKVAT 223 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~----RLqaLEqq~qLrdalne~Lk~EVqrLk~at 223 (331)
..++.||.+++.|+........++..++..-..+..+...|.. -...+......-.+.+..+..+++.|-..+
T Consensus 68 ~~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~k~~~~l~~l~~~v 144 (256)
T PF14932_consen 68 EDLEALEEELEALQEYKELYEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQKELSAECSKLNNELNQLLGEV 144 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=35.79 E-value=5e+02 Score=26.59 Aligned_cols=105 Identities=14% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHH
Q 020103 132 AKRILANRQSAARSKERK-------ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTE----NTELKLRLQAMEQ 200 (331)
Q Consensus 132 ~KRiLaNRESArRSReRK-------kqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~E----N~eLK~RLqaLEq 200 (331)
.|-+-.|.+..+++=.|| ...|..|..+...++.+...|.++...+.++...+... -.+|+.++..+..
T Consensus 4 ik~ir~n~~~v~~~l~~R~~~~~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~ 83 (418)
T TIGR00414 4 RKLLRNNPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKE 83 (418)
T ss_pred HHHHHhCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 020103 201 QAQLRDALNEALKKEVERLKVATGEMMTPTDTYNLG 236 (331)
Q Consensus 201 q~qLrdalne~Lk~EVqrLk~atge~~~~~~~f~~~ 236 (331)
+..--+.....+.+++..+-..++.++......+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~vP~g~~ 119 (418)
T TIGR00414 84 ELTELSAALKALEAELQDKLLSIPNIPHESVPVGKD 119 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCC
No 498
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.75 E-value=2e+02 Score=28.14 Aligned_cols=67 Identities=24% Similarity=0.371 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHH
Q 020103 135 ILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLS----TENTELKLRLQAMEQQA 202 (331)
Q Consensus 135 iLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~----~EN~eLK~RLqaLEqq~ 202 (331)
+-.+++...---.|.-+-+ +|...+..+|....+|..++..++....... +-++.|..||+++...+
T Consensus 35 ~a~~~q~~k~~~~~~~r~~-~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~a 105 (247)
T COG3879 35 LAAVFQTSKGESVRRARDL-DLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRMLA 105 (247)
T ss_pred HHHHHhhccCcchhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHh
No 499
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=35.73 E-value=5.8e+02 Score=29.62 Aligned_cols=115 Identities=14% Similarity=0.139 Sum_probs=0.0
Q ss_pred HhhhcCChhHhhhhccCChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 020103 111 EAKKAMDPDKLAELWTVDPKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTE 190 (331)
Q Consensus 111 ~~Kk~~~~~~LaEla~~D~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~e 190 (331)
++|..+=.+.+.+..-.-.-..+-+---+++-.|+-.+-.+-..-|+..+..|..+...|...+....+...++..-.++
T Consensus 276 k~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~e 355 (1265)
T KOG0976|consen 276 KAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNE 355 (1265)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 020103 191 LKLRLQAMEQQAQLRDALNEALKKEVERLKVATGE 225 (331)
Q Consensus 191 LK~RLqaLEqq~qLrdalne~Lk~EVqrLk~atge 225 (331)
|..+-..++..++-..-+.+..++|.++|.....+
T Consensus 356 LEKkrd~al~dvr~i~e~k~nve~elqsL~~l~ae 390 (1265)
T KOG0976|consen 356 LEKKRDMALMDVRSIQEKKENVEEELQSLLELQAE 390 (1265)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.69 E-value=90 Score=30.56 Aligned_cols=46 Identities=22% Similarity=0.366 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAME 199 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLE 199 (331)
+.+||.++..|+.++..|+. +..++.+......+-.+.-.|++.++
T Consensus 58 ~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~~~~~~~qe~~~~~~~~~~ 103 (262)
T COG1729 58 LTQLEQQLRQLQGKIEELRG-IQELQYQNNQNVERQEENEARLDSLE 103 (262)
T ss_pred cHHHHHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHHHHHHhhhhhhc
Done!