Query 020103
Match_columns 331
No_of_seqs 232 out of 856
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 11:50:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020103.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020103hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.5 3.3E-14 1.1E-18 105.1 7.1 52 130-181 1-52 (55)
2 2wt7_A Proto-oncogene protein 99.3 1.9E-11 6.4E-16 92.1 9.5 55 129-183 1-55 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.2 2.9E-11 1E-15 90.2 9.1 52 130-181 1-52 (61)
4 1jnm_A Proto-oncogene C-JUN; B 99.1 1.5E-10 5.3E-15 86.6 7.7 51 130-180 1-51 (62)
5 2dgc_A Protein (GCN4); basic d 99.0 3.8E-10 1.3E-14 85.4 7.1 47 135-181 14-60 (63)
6 1gd2_E Transcription factor PA 99.0 8E-10 2.7E-14 85.6 7.5 66 127-192 5-70 (70)
7 1ci6_A Transcription factor AT 98.8 6.8E-09 2.3E-13 78.3 7.1 51 130-180 2-52 (63)
8 1gu4_A CAAT/enhancer binding p 98.4 2.4E-06 8.1E-11 67.3 9.5 54 127-180 12-65 (78)
9 1hjb_A Ccaat/enhancer binding 98.3 3.2E-06 1.1E-10 67.9 9.8 53 127-179 12-64 (87)
10 3a5t_A Transcription factor MA 98.2 1.8E-07 6.1E-12 77.8 -0.1 60 114-178 26-85 (107)
11 2wt7_B Transcription factor MA 98.1 2E-05 6.7E-10 63.8 10.6 72 115-198 17-88 (90)
12 2oqq_A Transcription factor HY 97.1 0.0011 3.6E-08 46.9 6.1 39 150-195 2-40 (42)
13 2jee_A YIIU; FTSZ, septum, coi 95.4 0.34 1.2E-05 38.4 12.2 51 151-201 6-56 (81)
14 1skn_P DNA-binding domain of S 95.2 0.014 4.7E-07 47.4 3.5 32 128-159 60-91 (92)
15 2w6a_A ARF GTPase-activating p 94.8 0.11 3.7E-06 39.3 7.3 40 153-192 22-61 (63)
16 2jee_A YIIU; FTSZ, septum, coi 93.5 0.97 3.3E-05 35.8 10.6 45 153-197 22-66 (81)
17 3hnw_A Uncharacterized protein 93.4 0.62 2.1E-05 39.7 10.2 55 148-202 72-126 (138)
18 3oja_B Anopheles plasmodium-re 92.8 1.6 5.6E-05 42.8 13.7 72 154-225 505-583 (597)
19 3s4r_A Vimentin; alpha-helix, 92.4 2.6 9E-05 33.5 12.0 65 158-222 23-92 (93)
20 3oja_B Anopheles plasmodium-re 92.4 2.1 7.3E-05 41.9 13.8 18 208-225 559-576 (597)
21 3efg_A Protein SLYX homolog; x 91.8 0.4 1.4E-05 37.3 6.4 49 151-199 14-62 (78)
22 3ol1_A Vimentin; structural ge 91.7 3.5 0.00012 33.9 12.3 10 210-219 93-102 (119)
23 3a7p_A Autophagy protein 16; c 91.2 3.6 0.00012 36.0 12.3 39 157-195 95-133 (152)
24 2ve7_C Kinetochore protein NUF 89.5 0.41 1.4E-05 44.2 5.2 51 115-165 105-155 (250)
25 3s9g_A Protein hexim1; cyclin 89.4 1.7 5.7E-05 35.8 8.2 37 155-191 41-84 (104)
26 3cve_A Homer protein homolog 1 89.1 6.5 0.00022 30.4 11.1 48 154-201 3-50 (72)
27 3na7_A HP0958; flagellar bioge 89.1 13 0.00043 33.7 15.3 44 155-198 94-137 (256)
28 3cvf_A Homer-3, homer protein 88.9 3.3 0.00011 32.6 9.3 48 154-201 9-56 (79)
29 2dfs_A Myosin-5A; myosin-V, in 88.9 9.6 0.00033 41.8 16.1 21 179-199 1023-1043(1080)
30 4ath_A MITF, microphthalmia-as 88.2 1.9 6.6E-05 34.2 7.6 45 149-204 37-81 (83)
31 3u1c_A Tropomyosin alpha-1 cha 87.6 9.6 0.00033 30.5 15.3 54 145-198 17-70 (101)
32 2dfs_A Myosin-5A; myosin-V, in 87.3 6.1 0.00021 43.3 13.4 30 159-188 985-1014(1080)
33 3hnw_A Uncharacterized protein 87.2 5.1 0.00018 34.0 10.2 51 150-200 81-131 (138)
34 3vkg_A Dynein heavy chain, cyt 87.2 3.9 0.00013 49.7 12.6 62 157-218 2027-2088(3245)
35 1deb_A APC protein, adenomatou 86.9 3.7 0.00013 30.1 7.8 42 153-194 5-46 (54)
36 3cvf_A Homer-3, homer protein 86.9 1.4 4.9E-05 34.7 6.1 41 179-219 13-53 (79)
37 3mq7_A Bone marrow stromal ant 86.8 3.2 0.00011 35.0 8.5 17 181-197 73-89 (121)
38 3a7p_A Autophagy protein 16; c 86.2 9.9 0.00034 33.2 11.6 50 152-201 69-118 (152)
39 3swy_A Cyclic nucleotide-gated 85.9 4.3 0.00015 29.0 7.6 44 155-201 2-45 (46)
40 1hjb_A Ccaat/enhancer binding 85.8 7.5 0.00026 30.9 9.9 40 175-228 39-78 (87)
41 1i84_S Smooth muscle myosin he 85.5 7.2 0.00025 42.7 12.8 43 153-195 859-901 (1184)
42 2v71_A Nuclear distribution pr 84.4 16 0.00055 32.8 12.5 29 174-202 90-118 (189)
43 3swk_A Vimentin; cytoskeleton, 84.2 8 0.00027 30.3 9.3 68 154-221 3-84 (86)
44 3u59_A Tropomyosin beta chain; 84.1 14 0.00048 29.3 15.3 55 145-199 17-71 (101)
45 3m48_A General control protein 84.1 1.2 4.1E-05 30.0 3.7 26 153-178 2-27 (33)
46 1i84_S Smooth muscle myosin he 84.1 6.5 0.00022 43.0 11.7 14 184-197 918-931 (1184)
47 2oxj_A Hybrid alpha/beta pepti 84.1 1.4 4.8E-05 29.8 4.1 27 152-178 2-28 (34)
48 3mq9_A Bone marrow stromal ant 84.0 26 0.0009 33.4 14.8 67 151-220 404-470 (471)
49 3he5_A Synzip1; heterodimeric 83.5 5.3 0.00018 28.3 7.0 16 208-223 32-47 (49)
50 1gu4_A CAAT/enhancer binding p 83.3 8.5 0.00029 29.9 9.0 37 176-226 40-76 (78)
51 1go4_E MAD1 (mitotic arrest de 83.1 13 0.00043 30.4 10.2 69 152-227 13-95 (100)
52 3swf_A CGMP-gated cation chann 82.5 4.8 0.00016 31.4 7.1 46 155-203 4-49 (74)
53 3u1c_A Tropomyosin alpha-1 cha 82.2 17 0.0006 28.9 15.3 77 142-218 21-97 (101)
54 2yy0_A C-MYC-binding protein; 82.0 2.6 9E-05 30.6 5.2 27 169-195 23-49 (53)
55 3c3f_A Alpha/beta peptide with 81.7 2 6.7E-05 29.1 4.1 27 152-178 2-28 (34)
56 3i00_A HIP-I, huntingtin-inter 81.5 22 0.00075 29.6 11.8 11 209-219 70-80 (120)
57 3o0z_A RHO-associated protein 81.2 29 0.00098 30.7 13.5 10 211-220 101-110 (168)
58 1kd8_B GABH BLL, GCN4 acid bas 81.1 2.7 9.2E-05 28.7 4.6 28 152-179 2-29 (36)
59 2ocy_A RAB guanine nucleotide 81.1 27 0.00093 30.4 15.0 70 157-226 78-148 (154)
60 1nkp_B MAX protein, MYC proto- 80.8 1.9 6.6E-05 32.9 4.5 23 150-172 46-68 (83)
61 4ati_A MITF, microphthalmia-as 80.6 0.77 2.6E-05 38.0 2.3 24 181-204 93-116 (118)
62 1wle_A Seryl-tRNA synthetase; 80.5 17 0.00057 36.7 12.3 22 157-178 83-104 (501)
63 3cve_A Homer protein homolog 1 80.4 8.5 0.00029 29.8 7.9 39 180-218 8-46 (72)
64 1t2k_D Cyclic-AMP-dependent tr 80.0 5.4 0.00019 29.0 6.4 26 174-199 24-49 (61)
65 2v4h_A NF-kappa-B essential mo 79.9 23 0.00079 29.4 10.9 48 137-184 31-81 (110)
66 3a7o_A Autophagy protein 16; c 79.6 7.3 0.00025 30.3 7.2 27 174-200 48-74 (75)
67 1go4_E MAD1 (mitotic arrest de 79.4 3.5 0.00012 33.7 5.8 23 153-175 21-43 (100)
68 3m9b_A Proteasome-associated A 79.1 2.4 8.1E-05 39.7 5.2 13 209-221 84-96 (251)
69 1kd8_A GABH AIV, GCN4 acid bas 78.9 2.2 7.4E-05 29.2 3.6 28 152-179 2-29 (36)
70 3c3g_A Alpha/beta peptide with 78.8 3.8 0.00013 27.5 4.7 26 153-178 2-27 (33)
71 2hy6_A General control protein 78.1 2.8 9.5E-05 28.3 3.9 28 152-179 2-29 (34)
72 2bni_A General control protein 77.9 2.8 9.6E-05 28.3 3.9 27 152-178 2-28 (34)
73 3o0z_A RHO-associated protein 77.9 37 0.0012 30.0 14.7 62 134-202 73-134 (168)
74 2c9l_Y EB1, zebra, BZLF1 trans 77.8 13 0.00045 27.7 7.9 35 136-170 7-41 (63)
75 2dq0_A Seryl-tRNA synthetase; 77.8 19 0.00064 35.7 11.6 46 156-201 43-91 (455)
76 2w83_C C-JUN-amino-terminal ki 77.8 20 0.00068 28.1 9.3 46 157-202 8-60 (77)
77 3qh9_A Liprin-beta-2; coiled-c 77.7 24 0.00083 27.9 10.2 54 163-216 24-77 (81)
78 2wq1_A General control protein 77.6 4.3 0.00015 27.3 4.7 26 153-178 2-27 (33)
79 1gd2_E Transcription factor PA 77.5 5.3 0.00018 30.5 5.9 41 154-201 25-65 (70)
80 4etp_A Kinesin-like protein KA 77.3 7.4 0.00025 37.9 8.4 45 172-223 17-61 (403)
81 2v66_B Nuclear distribution pr 77.2 30 0.001 28.7 13.5 49 153-201 37-85 (111)
82 3vmx_A Voltage-gated hydrogen 77.1 9.7 0.00033 27.5 6.8 35 157-191 3-37 (48)
83 3tnu_B Keratin, type II cytosk 76.9 18 0.00062 29.7 9.6 28 153-180 45-72 (129)
84 1uo4_A General control protein 76.5 3.3 0.00011 28.0 3.9 26 153-178 3-28 (34)
85 1nlw_A MAD protein, MAX dimeri 76.3 4.8 0.00017 31.1 5.5 31 149-179 45-75 (80)
86 3he5_A Synzip1; heterodimeric 76.2 14 0.00048 26.1 7.3 24 152-175 4-27 (49)
87 1wle_A Seryl-tRNA synthetase; 75.9 70 0.0024 32.2 15.4 97 125-224 39-154 (501)
88 1ik9_A DNA repair protein XRCC 75.4 39 0.0013 30.4 12.0 67 151-220 139-206 (213)
89 2v66_B Nuclear distribution pr 75.1 23 0.00077 29.4 9.5 32 171-202 34-65 (111)
90 1fmh_A General control protein 75.0 6.2 0.00021 26.0 4.8 28 153-180 3-30 (33)
91 3u06_A Protein claret segregat 75.0 8.3 0.00028 37.8 8.1 55 161-222 6-60 (412)
92 4emc_A Monopolin complex subun 74.7 12 0.0004 33.9 8.3 45 151-202 13-57 (190)
93 2wt7_B Transcription factor MA 74.5 6.5 0.00022 31.6 5.9 17 182-198 51-67 (90)
94 3tnu_A Keratin, type I cytoske 74.3 17 0.00057 30.0 8.7 29 152-180 46-74 (131)
95 3na7_A HP0958; flagellar bioge 74.0 50 0.0017 29.7 12.8 70 150-221 31-104 (256)
96 2oqq_A Transcription factor HY 73.9 5.5 0.00019 28.1 4.7 24 151-174 17-40 (42)
97 1ci6_A Transcription factor AT 73.5 16 0.00056 26.8 7.6 28 174-201 25-52 (63)
98 3jsv_C NF-kappa-B essential mo 73.3 28 0.00095 28.2 9.4 57 136-192 8-67 (94)
99 1ses_A Seryl-tRNA synthetase; 72.4 56 0.0019 31.9 13.2 49 151-199 28-84 (421)
100 2oto_A M protein; helical coil 71.4 45 0.0015 28.0 11.8 31 154-184 53-83 (155)
101 1jnm_A Proto-oncogene C-JUN; B 71.3 4.7 0.00016 29.4 4.1 28 174-201 24-51 (62)
102 3m9b_A Proteasome-associated A 71.1 5.7 0.00019 37.2 5.6 28 153-180 56-83 (251)
103 1nkp_A C-MYC, MYC proto-oncoge 71.1 11 0.00037 29.5 6.4 35 150-198 51-85 (88)
104 1t6f_A Geminin; coiled-coil, c 70.8 7.9 0.00027 26.5 4.7 28 165-192 7-34 (37)
105 3oja_A Leucine-rich immune mol 70.6 48 0.0016 31.8 12.2 35 164-198 427-461 (487)
106 3ol1_A Vimentin; structural ge 70.5 42 0.0014 27.4 10.7 31 151-181 20-50 (119)
107 2eqb_B RAB guanine nucleotide 70.5 42 0.0014 27.3 12.2 48 151-198 12-59 (97)
108 3ghg_A Fibrinogen alpha chain; 70.5 16 0.00055 37.7 9.1 42 145-186 104-145 (562)
109 2dq0_A Seryl-tRNA synthetase; 70.2 73 0.0025 31.5 13.6 75 151-225 31-108 (455)
110 3m91_A Proteasome-associated A 69.8 21 0.0007 25.8 7.1 15 156-170 14-28 (51)
111 3a2a_A Voltage-gated hydrogen 69.6 12 0.0004 27.9 5.8 35 157-191 10-44 (58)
112 3ghg_A Fibrinogen alpha chain; 69.4 41 0.0014 34.7 11.7 17 209-225 140-156 (562)
113 4h22_A Leucine-rich repeat fli 69.3 46 0.0016 27.3 11.7 13 126-138 6-18 (103)
114 2v71_A Nuclear distribution pr 69.2 64 0.0022 28.9 15.0 49 153-201 90-138 (189)
115 3u59_A Tropomyosin beta chain; 68.7 41 0.0014 26.5 15.3 67 150-216 29-95 (101)
116 2ocy_A RAB guanine nucleotide 68.7 59 0.002 28.3 11.4 49 151-199 44-92 (154)
117 1ic2_A Tropomyosin alpha chain 68.0 37 0.0013 25.8 11.1 43 159-201 14-56 (81)
118 3tnu_A Keratin, type I cytoske 67.9 50 0.0017 27.1 12.5 10 212-221 117-126 (131)
119 1f5n_A Interferon-induced guan 67.4 81 0.0028 32.3 13.7 78 142-223 503-583 (592)
120 3q0x_A Centriole protein; cent 67.4 24 0.00081 32.5 8.8 56 125-186 158-213 (228)
121 1ses_A Seryl-tRNA synthetase; 67.1 25 0.00084 34.4 9.4 28 158-185 28-55 (421)
122 1am9_A Srebp-1A, protein (ster 66.4 8.4 0.00029 29.6 4.8 20 177-196 55-74 (82)
123 3i00_A HIP-I, huntingtin-inter 66.1 56 0.0019 27.1 10.8 46 146-198 35-80 (120)
124 2wt7_A Proto-oncogene protein 65.8 36 0.0012 24.8 9.4 28 174-201 25-52 (63)
125 3s4r_A Vimentin; alpha-helix, 65.4 39 0.0014 26.6 8.7 24 172-195 56-79 (93)
126 1jcd_A Major outer membrane li 65.4 36 0.0012 24.7 7.6 24 153-176 6-29 (52)
127 2kz5_A Transcription factor NF 65.1 0.89 3E-05 36.8 -1.0 23 129-151 65-87 (91)
128 4etp_A Kinesin-like protein KA 64.9 23 0.00078 34.5 8.7 47 150-196 9-55 (403)
129 1dip_A Delta-sleep-inducing pe 64.6 5.2 0.00018 31.4 3.2 23 169-191 19-41 (78)
130 3qne_A Seryl-tRNA synthetase, 64.3 61 0.0021 32.7 11.8 46 156-201 45-93 (485)
131 2xdj_A Uncharacterized protein 64.2 50 0.0017 25.8 9.0 34 153-186 22-55 (83)
132 2lw1_A ABC transporter ATP-bin 64.1 47 0.0016 25.5 9.0 51 151-201 22-78 (89)
133 3m48_A General control protein 63.9 9.4 0.00032 25.6 3.9 16 209-224 16-31 (33)
134 2r2v_A GCN4 leucine zipper; co 63.8 9.9 0.00034 25.7 4.1 27 152-178 2-28 (34)
135 1dip_A Delta-sleep-inducing pe 63.5 7.5 0.00026 30.5 4.0 23 150-172 21-43 (78)
136 3qne_A Seryl-tRNA synthetase, 63.4 34 0.0011 34.5 9.8 94 128-225 14-110 (485)
137 3mq9_A Bone marrow stromal ant 63.2 45 0.0015 31.8 10.3 66 151-221 397-464 (471)
138 2eqb_B RAB guanine nucleotide 62.4 43 0.0015 27.2 8.4 38 154-191 22-59 (97)
139 3s9g_A Protein hexim1; cyclin 62.1 59 0.002 26.7 9.2 24 170-193 35-58 (104)
140 1zme_C Proline utilization tra 62.0 7.1 0.00024 27.9 3.4 25 150-174 43-67 (70)
141 2yy0_A C-MYC-binding protein; 61.8 15 0.0005 26.6 5.1 18 181-198 21-38 (53)
142 2zxx_A Geminin; coiled-coil, c 61.6 17 0.0006 28.5 5.8 29 165-193 34-62 (79)
143 2j5u_A MREC protein; bacterial 61.3 4.7 0.00016 36.9 2.9 41 182-226 22-62 (255)
144 1a93_B MAX protein, coiled coi 60.9 12 0.00042 25.2 4.1 24 174-197 9-32 (34)
145 3bas_A Myosin heavy chain, str 59.6 60 0.002 25.2 12.1 48 151-198 35-82 (89)
146 2oto_A M protein; helical coil 59.2 79 0.0027 26.5 11.8 24 175-198 53-76 (155)
147 4h22_A Leucine-rich repeat fli 59.0 21 0.00072 29.4 6.1 13 210-222 68-80 (103)
148 3m0d_C TNF receptor-associated 58.1 53 0.0018 24.2 9.2 28 149-176 4-31 (65)
149 1dh3_A Transcription factor CR 58.0 15 0.00051 26.5 4.5 26 174-199 24-49 (55)
150 2dgc_A Protein (GCN4); basic d 58.0 14 0.00047 27.4 4.5 24 175-198 33-56 (63)
151 3qh9_A Liprin-beta-2; coiled-c 57.9 59 0.002 25.7 8.3 22 181-202 21-42 (81)
152 3q8t_A Beclin-1; autophagy, AT 57.8 69 0.0024 25.4 11.4 44 148-191 22-65 (96)
153 2oa5_A Hypothetical protein BQ 57.1 5.8 0.0002 33.0 2.5 24 152-175 9-32 (110)
154 2dq3_A Seryl-tRNA synthetase; 56.7 15 0.00052 35.9 5.8 64 157-227 43-109 (425)
155 2efr_A General control protein 56.6 98 0.0034 26.8 11.8 42 153-194 72-113 (155)
156 4emc_A Monopolin complex subun 56.5 94 0.0032 28.0 10.4 44 152-195 21-64 (190)
157 3efg_A Protein SLYX homolog; x 56.5 41 0.0014 25.9 7.1 26 154-179 10-35 (78)
158 3m91_A Proteasome-associated A 56.3 48 0.0016 23.9 7.0 10 210-219 40-49 (51)
159 2oxj_A Hybrid alpha/beta pepti 56.0 20 0.00068 24.2 4.5 16 209-224 17-32 (34)
160 3oa7_A Head morphogenesis prot 55.6 39 0.0013 30.8 7.8 42 160-201 32-73 (206)
161 2fxo_A Myosin heavy chain, car 55.0 86 0.003 25.6 10.7 13 211-223 108-120 (129)
162 1am9_A Srebp-1A, protein (ster 54.7 60 0.0021 24.7 7.8 17 152-168 51-67 (82)
163 1nlw_A MAD protein, MAX dimeri 53.7 50 0.0017 25.3 7.2 15 182-196 64-78 (80)
164 2v4h_A NF-kappa-B essential mo 53.7 95 0.0033 25.7 12.0 18 181-198 85-102 (110)
165 3tnu_B Keratin, type II cytosk 53.1 92 0.0031 25.4 12.0 30 153-182 38-67 (129)
166 3cl3_D NF-kappa-B essential mo 52.9 24 0.00084 30.1 5.7 21 203-223 87-107 (130)
167 1wlq_A Geminin; coiled-coil; 2 52.4 48 0.0017 26.3 7.0 30 164-193 37-66 (83)
168 2wuj_A Septum site-determining 52.3 15 0.0005 26.7 3.7 20 180-199 35-54 (57)
169 2er8_A Regulatory protein Leu3 52.1 7.8 0.00027 28.0 2.3 23 149-171 47-69 (72)
170 2e7s_A RAB guanine nucleotide 51.9 18 0.00061 31.0 4.7 30 193-222 103-132 (135)
171 1wt6_A Myotonin-protein kinase 51.6 87 0.003 24.7 10.3 16 138-153 14-29 (81)
172 1joc_A EEA1, early endosomal a 51.1 88 0.003 25.6 8.8 20 156-175 16-35 (125)
173 3q8t_A Beclin-1; autophagy, AT 50.9 90 0.0031 24.7 13.9 44 155-198 8-51 (96)
174 3c3f_A Alpha/beta peptide with 50.8 26 0.0009 23.6 4.4 17 209-225 17-33 (34)
175 3nmd_A CGMP dependent protein 50.4 44 0.0015 25.8 6.3 27 195-221 42-68 (72)
176 1uii_A Geminin; human, DNA rep 50.3 36 0.0012 27.0 5.9 29 165-193 46-74 (83)
177 3nmd_A CGMP dependent protein 49.9 68 0.0023 24.8 7.3 28 149-176 38-65 (72)
178 3lss_A Seryl-tRNA synthetase; 49.4 81 0.0028 31.7 9.8 20 158-177 51-70 (484)
179 3s84_A Apolipoprotein A-IV; fo 49.1 1.6E+02 0.0056 27.1 13.4 84 139-225 164-249 (273)
180 4e61_A Protein BIM1; EB1-like 48.9 1E+02 0.0035 25.3 8.7 51 167-219 6-61 (106)
181 2efr_A General control protein 48.9 1.3E+02 0.0045 26.0 15.2 15 207-221 140-154 (155)
182 3trt_A Vimentin; cytoskeleton, 48.8 78 0.0027 23.3 8.3 11 187-197 57-67 (77)
183 3htk_A Structural maintenance 48.8 67 0.0023 22.6 7.8 17 151-167 12-28 (60)
184 2wvr_A Geminin; DNA replicatio 48.7 82 0.0028 28.8 8.8 29 165-193 115-143 (209)
185 2xnx_M M protein, M1-BC1; cell 48.3 90 0.0031 27.1 8.6 42 179-220 87-128 (146)
186 3u06_A Protein claret segregat 48.0 57 0.002 31.9 8.3 32 160-191 19-50 (412)
187 3c3g_A Alpha/beta peptide with 47.7 32 0.0011 23.1 4.4 17 209-225 16-32 (33)
188 3swk_A Vimentin; cytoskeleton, 47.5 89 0.003 24.2 7.8 56 168-223 3-58 (86)
189 2zqm_A Prefoldin beta subunit 47.3 69 0.0023 24.9 7.3 10 149-158 32-41 (117)
190 3bas_A Myosin heavy chain, str 46.8 99 0.0034 23.9 13.1 50 149-198 12-61 (89)
191 2j5u_A MREC protein; bacterial 46.7 9.7 0.00033 34.8 2.5 7 185-191 49-55 (255)
192 3vkg_A Dynein heavy chain, cyt 46.3 1.2E+02 0.0042 37.3 12.1 45 152-196 2029-2073(3245)
193 1ic2_A Tropomyosin alpha chain 46.3 94 0.0032 23.5 10.8 54 145-198 14-67 (81)
194 2dq3_A Seryl-tRNA synthetase; 46.2 58 0.002 31.7 8.1 33 151-183 30-62 (425)
195 2w83_C C-JUN-amino-terminal ki 45.9 35 0.0012 26.8 5.2 36 163-198 28-63 (77)
196 3uux_B Mitochondrial division 45.5 58 0.002 30.3 7.5 43 153-202 165-207 (242)
197 2wuj_A Septum site-determining 44.7 19 0.00063 26.1 3.3 29 151-179 27-55 (57)
198 3trt_A Vimentin; cytoskeleton, 44.4 93 0.0032 22.9 9.3 39 153-191 37-75 (77)
199 2hy6_A General control protein 43.9 33 0.0011 23.1 4.0 17 209-225 17-33 (34)
200 1m1j_B Fibrinogen beta chain; 43.4 2.1E+02 0.0072 28.7 11.7 14 210-223 178-191 (464)
201 1ik9_A DNA repair protein XRCC 43.2 1.8E+02 0.0063 26.0 10.4 39 153-191 134-172 (213)
202 2bni_A General control protein 43.1 33 0.0011 23.1 3.9 17 209-225 17-33 (34)
203 2no2_A HIP-I, huntingtin-inter 42.3 1.4E+02 0.0046 24.2 10.6 22 143-164 21-42 (107)
204 1hlo_A Protein (transcription 42.2 22 0.00074 26.9 3.4 15 152-166 58-72 (80)
205 2wq1_A General control protein 42.0 46 0.0016 22.3 4.5 17 209-225 16-32 (33)
206 2fic_A Bridging integrator 1; 41.9 1.7E+02 0.006 25.4 12.6 68 129-199 143-210 (251)
207 1deq_A Fibrinogen (alpha chain 41.9 60 0.002 32.2 7.3 29 151-179 113-141 (390)
208 2oa5_A Hypothetical protein BQ 41.6 80 0.0027 26.2 7.0 22 175-196 11-32 (110)
209 1fmh_A General control protein 40.9 36 0.0012 22.4 3.8 25 176-200 5-29 (33)
210 3tq2_A KE1; parallel three hel 40.5 56 0.0019 21.8 4.8 28 192-219 7-34 (36)
211 3vp9_A General transcriptional 40.2 52 0.0018 26.5 5.5 34 187-224 51-85 (92)
212 1s1c_X RHO-associated, coiled- 39.2 1.3E+02 0.0044 23.1 9.4 31 155-185 3-33 (71)
213 1wt6_A Myotonin-protein kinase 39.2 1.4E+02 0.0048 23.5 7.8 11 151-161 14-24 (81)
214 1p9i_A Cortexillin I/GCN4 hybr 39.0 31 0.001 22.4 3.2 17 182-198 9-25 (31)
215 1m1j_A Fibrinogen alpha subuni 38.8 2.7E+02 0.0091 28.4 11.5 68 130-197 89-157 (491)
216 3e98_A GAF domain of unknown f 38.7 99 0.0034 28.1 7.9 47 152-202 66-112 (252)
217 1nkp_B MAX protein, MYC proto- 38.6 74 0.0025 23.9 6.0 14 183-196 65-78 (83)
218 1fxk_C Protein (prefoldin); ar 38.4 1.1E+02 0.0036 24.6 7.3 22 155-176 99-120 (133)
219 2ve7_A Kinetochore protein HEC 38.3 43 0.0015 31.5 5.6 21 159-179 186-206 (315)
220 3bbp_D GRIP and coiled-coil do 38.3 27 0.00094 27.0 3.4 13 208-220 51-63 (71)
221 1uo4_A General control protein 38.2 50 0.0017 22.3 4.2 16 209-224 17-32 (34)
222 2xv5_A Lamin-A/C; structural p 38.1 1.3E+02 0.0045 22.9 8.2 12 151-162 12-23 (74)
223 3uux_B Mitochondrial division 37.9 2.5E+02 0.0086 26.1 12.0 52 150-201 176-227 (242)
224 1lwu_C Fibrinogen gamma chain; 37.7 98 0.0034 29.6 8.0 6 157-162 18-23 (323)
225 2dnx_A Syntaxin-12; snare, HAB 37.6 1.1E+02 0.0038 25.0 7.4 22 155-176 48-69 (130)
226 1nkp_A C-MYC, MYC proto-oncoge 37.0 1E+02 0.0035 23.8 6.7 14 207-220 73-86 (88)
227 3w03_C DNA repair protein XRCC 36.8 53 0.0018 29.3 5.6 42 126-177 136-178 (184)
228 4gkw_A Spindle assembly abnorm 36.6 1.5E+02 0.0052 25.7 8.2 27 153-179 100-126 (167)
229 1gk7_A Vimentin; intermediate 35.8 50 0.0017 22.4 4.1 21 175-195 16-36 (39)
230 4b4t_K 26S protease regulatory 35.8 54 0.0018 32.1 6.0 53 162-221 39-91 (428)
231 3htk_A Structural maintenance 35.6 1.1E+02 0.0039 21.4 8.5 40 154-193 8-47 (60)
232 1jcd_A Major outer membrane li 35.1 1.3E+02 0.0043 21.8 7.3 26 158-183 4-29 (52)
233 3lss_A Seryl-tRNA synthetase; 34.4 3.4E+02 0.012 27.2 11.6 13 188-200 113-125 (484)
234 2xdj_A Uncharacterized protein 34.1 1.6E+02 0.0056 22.8 10.3 30 169-198 24-53 (83)
235 1fmh_B General control protein 33.7 70 0.0024 21.0 4.3 16 183-198 12-27 (33)
236 3he4_A Synzip6; heterodimeric 33.4 59 0.002 23.5 4.3 31 154-184 20-50 (56)
237 2i1j_A Moesin; FERM, coiled-co 33.4 73 0.0025 32.4 6.7 39 153-191 337-375 (575)
238 1a93_B MAX protein, coiled coi 33.4 62 0.0021 21.8 4.1 21 160-180 9-29 (34)
239 4b4t_K 26S protease regulatory 33.3 70 0.0024 31.3 6.4 21 154-174 45-65 (428)
240 3he5_B Synzip2; heterodimeric 33.0 1.3E+02 0.0045 21.4 7.5 11 211-221 35-45 (52)
241 2xu6_A MDV1 coiled coil; prote 32.9 94 0.0032 24.0 5.7 11 192-202 41-51 (72)
242 2nrj_A HBL B protein; enteroto 32.3 2.1E+02 0.0071 27.2 9.3 73 149-224 121-193 (346)
243 1deq_A Fibrinogen (alpha chain 32.0 3.9E+02 0.013 26.5 13.5 16 208-223 142-157 (390)
244 1zxa_A CGMP-dependent protein 31.9 70 0.0024 24.3 4.8 30 148-177 22-51 (67)
245 4dnd_A Syntaxin-10, SYN10; str 31.9 1.8E+02 0.0062 24.1 7.8 62 151-223 67-128 (130)
246 1gk6_A Vimentin; intermediate 31.5 1.3E+02 0.0046 21.6 6.1 20 156-175 5-24 (59)
247 3viq_B Mating-type switching p 31.0 1.7E+02 0.0058 23.1 7.0 24 155-178 5-28 (85)
248 2zvf_A Alanyl-tRNA synthetase; 31.0 1.3E+02 0.0046 24.7 6.9 16 183-198 36-51 (171)
249 2aze_A Transcription factor DP 31.0 1.4E+02 0.0049 26.0 7.2 20 146-165 21-40 (155)
250 1gmj_A ATPase inhibitor; coile 31.0 2E+02 0.0068 22.8 9.3 7 139-145 25-31 (84)
251 3vhx_B Kinesin-like protein KI 30.6 22 0.00076 30.0 1.9 18 9-26 7-24 (120)
252 3plt_A Sphingolipid long chain 30.5 2.6E+02 0.0089 25.8 9.3 63 134-201 97-160 (234)
253 4ani_A Protein GRPE; chaperone 30.3 2E+02 0.0067 26.0 8.3 25 276-307 171-199 (213)
254 3q0x_A Centriole protein; cent 30.2 2.3E+02 0.008 25.9 8.9 45 161-205 167-212 (228)
255 3ra3_A P1C; coiled coil domain 29.6 34 0.0012 21.7 2.2 16 184-199 5-20 (28)
256 3gp4_A Transcriptional regulat 29.2 2.4E+02 0.0081 23.1 9.3 11 128-138 61-71 (142)
257 1x8y_A Lamin A/C; structural p 28.8 2E+02 0.0067 22.1 11.0 8 213-220 69-76 (86)
258 1uii_A Geminin; human, DNA rep 28.8 2.1E+02 0.007 22.7 7.1 18 184-201 44-61 (83)
259 3lay_A Zinc resistance-associa 28.0 1.1E+02 0.0036 26.9 6.0 13 183-195 117-129 (175)
260 3ljm_A Coil Ser L9C; de novo d 27.7 1.1E+02 0.0036 19.9 4.3 17 155-171 5-21 (31)
261 1h7c_A Tubulin-specific chaper 27.7 2.4E+02 0.0082 22.7 9.0 37 188-224 47-83 (108)
262 3jsv_C NF-kappa-B essential mo 27.6 2.4E+02 0.0083 22.7 10.3 14 187-200 41-54 (94)
263 1m1j_C Fibrinogen gamma chain; 27.0 1.7E+02 0.0057 28.9 7.8 10 211-220 123-132 (409)
264 3t98_B Nucleoporin NUP58/NUP45 26.6 2.4E+02 0.0082 22.3 9.3 9 212-220 70-78 (93)
265 1uix_A RHO-associated kinase; 26.6 2.2E+02 0.0074 21.9 8.2 31 156-186 2-32 (71)
266 3m0a_A TNF receptor-associated 26.4 1.8E+02 0.0062 20.8 9.1 23 154-176 8-30 (66)
267 4dk0_A Putative MACA; alpha-ha 25.9 3.7E+02 0.013 24.2 10.0 12 212-223 141-152 (369)
268 1avy_A Fibritin, gpwac M; bact 25.6 1.6E+02 0.0054 22.9 5.7 17 213-230 35-51 (74)
269 2l5g_A GPS2 protein, G protein 25.0 79 0.0027 21.7 3.5 20 151-170 15-34 (38)
270 2w6b_A RHO guanine nucleotide 24.7 1.6E+02 0.0055 21.7 5.4 11 183-193 21-31 (56)
271 3swy_A Cyclic nucleotide-gated 24.2 1.9E+02 0.0065 20.4 5.6 28 152-179 6-33 (46)
272 2odv_A Plectin 1, HD1; plakin 24.1 3.9E+02 0.013 23.9 9.4 33 129-161 102-134 (235)
273 4gkw_A Spindle assembly abnorm 23.7 3.6E+02 0.012 23.3 11.5 31 153-183 48-78 (167)
274 3viq_B Mating-type switching p 23.7 2.7E+02 0.0093 22.0 7.8 22 152-173 9-30 (85)
275 3v86_A De novo design helix; c 23.3 1.1E+02 0.0038 19.2 3.7 18 156-173 5-22 (27)
276 2akf_A Coronin-1A; coiled coil 23.1 1E+02 0.0036 20.2 3.7 18 155-172 3-20 (32)
277 1kd8_B GABH BLL, GCN4 acid bas 22.8 1.8E+02 0.0063 19.7 5.0 13 212-224 20-32 (36)
278 2zdi_C Prefoldin subunit alpha 22.3 1.4E+02 0.0047 24.7 5.4 21 155-175 109-129 (151)
279 2gkw_A TNF receptor-associated 22.2 1.4E+02 0.0048 25.4 5.6 15 154-168 3-17 (192)
280 3e98_A GAF domain of unknown f 22.1 2.1E+02 0.0072 25.9 7.0 27 175-201 68-94 (252)
281 3rkg_A Magnesium transporter M 22.1 3.5E+02 0.012 24.9 8.6 23 191-213 172-195 (261)
282 1lrz_A FEMA, factor essential 22.0 2.8E+02 0.0095 26.3 8.2 24 151-174 247-270 (426)
283 1kd8_A GABH AIV, GCN4 acid bas 21.9 1.2E+02 0.004 20.7 3.9 9 214-222 22-30 (36)
284 2fxo_A Myosin heavy chain, car 21.7 3.2E+02 0.011 22.1 15.9 9 211-219 115-123 (129)
285 3a2a_A Voltage-gated hydrogen 21.6 1.9E+02 0.0066 21.4 5.3 24 180-203 12-35 (58)
286 1hwt_C Protein (heme activator 21.6 36 0.0012 24.8 1.5 22 149-170 56-77 (81)
287 4ath_A MITF, microphthalmia-as 21.6 1.9E+02 0.0066 22.7 5.7 31 150-180 48-78 (83)
288 1wlq_A Geminin; coiled-coil; 2 21.3 3.1E+02 0.01 21.7 7.2 11 187-197 39-49 (83)
289 2l5g_B Putative uncharacterize 21.2 2E+02 0.0068 20.2 5.0 30 155-184 6-35 (42)
290 2k48_A Nucleoprotein; viral pr 21.1 3.5E+02 0.012 22.3 8.1 23 153-175 37-59 (107)
291 3w03_C DNA repair protein XRCC 21.0 2E+02 0.0069 25.6 6.4 34 147-180 141-174 (184)
292 1m1j_B Fibrinogen beta chain; 20.9 6.4E+02 0.022 25.2 15.2 9 134-142 110-118 (464)
293 2ve7_C Kinetochore protein NUF 20.9 36 0.0012 31.2 1.6 17 184-200 160-176 (250)
294 2p0t_A UPF0307 protein pspto_4 20.8 4E+02 0.014 23.3 8.3 21 139-159 61-81 (176)
295 4b4t_J 26S protease regulatory 20.7 1.1E+02 0.0036 30.1 5.0 10 212-221 58-67 (405)
296 1r8e_A Multidrug-efflux transp 20.2 2.1E+02 0.0072 24.9 6.4 12 128-139 65-76 (278)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.50 E-value=3.3e-14 Score=105.09 Aligned_cols=52 Identities=31% Similarity=0.514 Sum_probs=49.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020103 130 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDT 181 (331)
Q Consensus 130 KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~ 181 (331)
||.+|+++||+||++||+||++|+++||.+|..|+.+|..|..++..|+..+
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999999999999999887654
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.28 E-value=1.9e-11 Score=92.06 Aligned_cols=55 Identities=20% Similarity=0.364 Sum_probs=49.3
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 020103 129 PKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTD 183 (331)
Q Consensus 129 ~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~ 183 (331)
+||.+|+.+||+||++||+||++|+.+|+.+|..|+.+|..|..++..|+.++..
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999988766554433
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.25 E-value=2.9e-11 Score=90.16 Aligned_cols=52 Identities=29% Similarity=0.514 Sum_probs=47.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020103 130 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDT 181 (331)
Q Consensus 130 KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~ 181 (331)
||.+|+.+||+||++||+||++|+.+||.+|..|+.+|..|..++..|+.++
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999888765543
No 4
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.12 E-value=1.5e-10 Score=86.60 Aligned_cols=51 Identities=29% Similarity=0.518 Sum_probs=46.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 130 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRD 180 (331)
Q Consensus 130 KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~ 180 (331)
|+.+|..+||+||++||+||++|+.+||.+|..|+.+|..|..++..|+.+
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e 51 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQ 51 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999999999999999999988875544
No 5
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.04 E-value=3.8e-10 Score=85.38 Aligned_cols=47 Identities=26% Similarity=0.359 Sum_probs=41.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020103 135 ILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDT 181 (331)
Q Consensus 135 iLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~ 181 (331)
..+||+||++||+||++|+.+||.+|..|+.+|..|..++..|+..+
T Consensus 14 R~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 14 RARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35699999999999999999999999999999999998888776643
No 6
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=99.00 E-value=8e-10 Score=85.57 Aligned_cols=66 Identities=23% Similarity=0.249 Sum_probs=55.9
Q ss_pred CChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 020103 127 VDPKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELK 192 (331)
Q Consensus 127 ~D~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK 192 (331)
.++...||...||.|++..|+||.+||.+||.+|..|+.++..|..++..|..++..|..||..||
T Consensus 5 ~~~~~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 5 DQEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred ccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 445568999999999999999999999999999999999998887777777777777777776653
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=98.83 E-value=6.8e-09 Score=78.30 Aligned_cols=51 Identities=18% Similarity=0.331 Sum_probs=41.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 130 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRD 180 (331)
Q Consensus 130 KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~ 180 (331)
|+.+++.+||.||+|+|.||+.++.+|+.+++.|+.+|..|..++..|+.+
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999999999999999999999999999999988865543
No 8
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.35 E-value=2.4e-06 Score=67.30 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=46.5
Q ss_pred CChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 127 VDPKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRD 180 (331)
Q Consensus 127 ~D~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~ 180 (331)
.|++-..|..+|.++|++||+++++...+++.+|..|+.||..|..+|..|+.+
T Consensus 12 ~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E 65 (78)
T 1gu4_A 12 HSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRE 65 (78)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667899999999999999999999999999999999998888765543
No 9
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.33 E-value=3.2e-06 Score=67.86 Aligned_cols=53 Identities=19% Similarity=0.188 Sum_probs=45.2
Q ss_pred CChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 127 VDPKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQR 179 (331)
Q Consensus 127 ~D~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr 179 (331)
.|++-..|..+|.++|++||+++++...+++.++..|+.||..|..+|..|+.
T Consensus 12 ~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~ 64 (87)
T 1hjb_A 12 HSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSR 64 (87)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677789999999999999999999999999999998888877765433
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.20 E-value=1.8e-07 Score=77.75 Aligned_cols=60 Identities=23% Similarity=0.383 Sum_probs=47.0
Q ss_pred hcCChhHhhhhccCChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 114 KAMDPDKLAELWTVDPKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQ 178 (331)
Q Consensus 114 k~~~~~~LaEla~~D~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lq 178 (331)
+.++.+.+.+ .|..||.++||.+|+.+|.||...+.+||.++..|+.+...|..++..+.
T Consensus 26 ~~Ls~~e~~~-----lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~ 85 (107)
T 3a5t_A 26 RGLSKEEIIQ-----LKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMK 85 (107)
T ss_dssp TTCCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHH
T ss_pred hCCCHHHHHH-----HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555 69999999999999999999999999999988887776666555444433
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.13 E-value=2e-05 Score=63.75 Aligned_cols=72 Identities=18% Similarity=0.310 Sum_probs=55.1
Q ss_pred cCChhHhhhhccCChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 020103 115 AMDPDKLAELWTVDPKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLR 194 (331)
Q Consensus 115 ~~~~~~LaEla~~D~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~R 194 (331)
..+.+.+.. .|..||-++||-+|+-+|.||...+.+||.++..|+.+...|..++..+ ..|-..+|.+
T Consensus 17 gls~eev~~-----lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~-------~~e~d~~k~k 84 (90)
T 2wt7_B 17 GFTKDEVIR-----LKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRL-------ARERDAYKVK 84 (90)
T ss_dssp TCCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred CCCHHHHHH-----HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 455555554 6889999999999999999999999999999998888777777665544 4455556655
Q ss_pred HHHH
Q 020103 195 LQAM 198 (331)
Q Consensus 195 LqaL 198 (331)
+++|
T Consensus 85 ~~~L 88 (90)
T 2wt7_B 85 SEKL 88 (90)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 5543
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=97.14 E-value=0.0011 Score=46.89 Aligned_cols=39 Identities=33% Similarity=0.559 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020103 150 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 195 (331)
Q Consensus 150 kqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RL 195 (331)
|.|+.+||.+++.|+..|+.|..++..| ..||.-|++-|
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstL-------q~EN~mLRqvl 40 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTL-------QNENQMLRHIL 40 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHh
Confidence 5899999999999999999998888765 45777776543
No 13
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.43 E-value=0.34 Score=38.41 Aligned_cols=51 Identities=22% Similarity=0.287 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
.-++.||.||+.+-..++-|..++..|+.++..|..+|.+++..-..+..+
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~e 56 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERE 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 357788999998888888888888888888888888888876665555444
No 14
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=95.17 E-value=0.014 Score=47.36 Aligned_cols=32 Identities=13% Similarity=0.182 Sum_probs=26.8
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020103 128 DPKRAKRILANRQSAARSKERKARYISELERK 159 (331)
Q Consensus 128 D~KR~KRiLaNRESArRSReRKkqyleeLE~k 159 (331)
..|.+||..+||.+|+++|+||...+++|+..
T Consensus 60 ~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~~ 91 (92)
T 1skn_P 60 LIRKIRRRGKNKVAARTCRQRRTDRHDKMSHY 91 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcc
Confidence 36889999999999999999999999888753
No 15
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=94.83 E-value=0.11 Score=39.33 Aligned_cols=40 Identities=35% Similarity=0.486 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELK 192 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK 192 (331)
+..=|.||++|..-|+.|+.++..+++....|..||..|+
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 3455889999999999999999999999999999999986
No 16
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=93.48 E-value=0.97 Score=35.81 Aligned_cols=45 Identities=24% Similarity=0.368 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQA 197 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqa 197 (331)
|.-|.-++..|+.+|..|..++..++.....|..||..|+.....
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~ 66 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNG 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666666666677777777665443
No 17
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=93.38 E-value=0.62 Score=39.68 Aligned_cols=55 Identities=16% Similarity=0.206 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020103 148 RKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA 202 (331)
Q Consensus 148 RKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~ 202 (331)
+.++.++.|+.+++.+..|+..|..++..++.++..+..++.+|+.++..++.+.
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445577888888888888888888888888888888888888888887776553
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.83 E-value=1.6 Score=42.76 Aligned_cols=72 Identities=15% Similarity=0.200 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 020103 154 SELERKVQTLQTEATTLSAQLTLFQ-------RDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGE 225 (331)
Q Consensus 154 eeLE~kVq~Lq~ENs~L~~qlt~Lq-------r~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~atge 225 (331)
+.|+..++.++...+.+..++..++ +++..+..|..+++.+++.++++...-...+..+++|+..|...+..
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444444444444444444444444 44444444444554444444433322222344444555555444443
No 19
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=92.43 E-value=2.6 Score=33.50 Aligned_cols=65 Identities=18% Similarity=0.269 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 158 RKVQTLQTEATTLSAQLTLFQRDTT-----DLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVA 222 (331)
Q Consensus 158 ~kVq~Lq~ENs~L~~qlt~Lqr~~~-----~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~a 222 (331)
.||..|+.+|..|..++..++.+.. ....+-..|+.+|..+.....--....+-|.+++.+||..
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566666677777666666654322 2345666666666666555433334455577778777753
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.35 E-value=2.1 Score=41.93 Aligned_cols=18 Identities=11% Similarity=0.145 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 020103 208 LNEALKKEVERLKVATGE 225 (331)
Q Consensus 208 lne~Lk~EVqrLk~atge 225 (331)
....|++|.+.++...-+
T Consensus 559 ~~~~l~~e~~~~~~~~~~ 576 (597)
T 3oja_B 559 KQAELRQETSLKRQKVKQ 576 (597)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555666555544433
No 21
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=91.80 E-value=0.4 Score=37.31 Aligned_cols=49 Identities=18% Similarity=0.091 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAME 199 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLE 199 (331)
.+|.+||.++...+.-...|...|..-+++...|..+.+.|..|+..++
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678999999999999999999988888888888777777777766654
No 22
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=91.66 E-value=3.5 Score=33.93 Aligned_cols=10 Identities=40% Similarity=0.630 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 020103 210 EALKKEVERL 219 (331)
Q Consensus 210 e~Lk~EVqrL 219 (331)
+.|++|+.-|
T Consensus 93 esL~eEl~FL 102 (119)
T 3ol1_A 93 ESLQEEIAFL 102 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444333
No 23
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=91.16 E-value=3.6 Score=36.00 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020103 157 ERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 195 (331)
Q Consensus 157 E~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RL 195 (331)
..-++.|+.|...|..++..++.+...|..||..|-.|.
T Consensus 95 ~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 95 NKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777777888887776663
No 24
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=89.49 E-value=0.41 Score=44.23 Aligned_cols=51 Identities=14% Similarity=0.105 Sum_probs=32.7
Q ss_pred cCChhHhhhhccCChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 115 AMDPDKLAELWTVDPKRAKRILANRQSAARSKERKARYISELERKVQTLQT 165 (331)
Q Consensus 115 ~~~~~~LaEla~~D~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ 165 (331)
.+..=.+.+|...++||.+|+|+-=.==.+.|+-|..-++++-.+.+.+..
T Consensus 105 gv~DFtl~DL~kP~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~ 155 (250)
T 2ve7_C 105 RVNDFETADILCPKAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSAD 155 (250)
T ss_dssp TCCCCCHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred CCCCCcHhHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556677888899999999886555566666665554444444433333
No 25
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=89.38 E-value=1.7 Score=35.83 Aligned_cols=37 Identities=24% Similarity=0.412 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHH
Q 020103 155 ELERKVQTLQTEATTLSA-------QLTLFQRDTTDLSTENTEL 191 (331)
Q Consensus 155 eLE~kVq~Lq~ENs~L~~-------qlt~Lqr~~~~L~~EN~eL 191 (331)
+||.++..|+.||..|.. ++..|+.+...|.+||..|
T Consensus 41 ~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L 84 (104)
T 3s9g_A 41 ELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQL 84 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence 456666666555555544 3344444444444444444
No 26
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=89.13 E-value=6.5 Score=30.41 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 154 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 154 eeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
.++..+++.++.+|..|..+|..++.+...-..+-..++..|..+-+.
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~ 50 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEI 50 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357778888888888888888888888877777777776666655433
No 27
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=89.06 E-value=13 Score=33.67 Aligned_cols=44 Identities=11% Similarity=0.198 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 155 ELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 155 eLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
.|+.++..+..++..|..++..+......+..+-..++.++..+
T Consensus 94 aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~ 137 (256)
T 3na7_A 94 SLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLEL 137 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333333333333333343343333
No 28
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=88.90 E-value=3.3 Score=32.56 Aligned_cols=48 Identities=25% Similarity=0.328 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 154 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 154 eeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
+++..+++.++.+|..|..+|..++.+...-..+-..++..|..+-+.
T Consensus 9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~ 56 (79)
T 3cvf_A 9 EETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQL 56 (79)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777778888888888877777777666666666666555433
No 29
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=88.89 E-value=9.6 Score=41.76 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=11.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHH
Q 020103 179 RDTTDLSTENTELKLRLQAME 199 (331)
Q Consensus 179 r~~~~L~~EN~eLK~RLqaLE 199 (331)
.....|..||..|++++..|+
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555
No 30
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=88.18 E-value=1.9 Score=34.21 Aligned_cols=45 Identities=31% Similarity=0.426 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 149 KARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQL 204 (331)
Q Consensus 149 KkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qL 204 (331)
-..||..|..+++.+..+.. +...|...|+.|..|+|.||.+++.
T Consensus 37 svdYI~~Lq~e~~r~~e~e~-----------r~k~le~~n~~l~~riqELE~qa~~ 81 (83)
T 4ath_A 37 SVDYIRKLQREQQRAKDLEN-----------RQKKLEHANRHLLLRVQELEMQARA 81 (83)
T ss_dssp HHHHHHHHHHTHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 36777777666665554433 3445889999999999999999864
No 31
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=87.57 E-value=9.6 Score=30.48 Aligned_cols=54 Identities=9% Similarity=0.128 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 145 SKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 145 SReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
-+..-....+.+|.+++.++..+..+..++..|++.+..|..+-..+..+|...
T Consensus 17 e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 17 DKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555666666666666666666666666666666666555555555443
No 32
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=87.29 E-value=6.1 Score=43.29 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 020103 159 KVQTLQTEATTLSAQLTLFQRDTTDLSTEN 188 (331)
Q Consensus 159 kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN 188 (331)
+|..|+.++..|..++..+.++...++..+
T Consensus 985 ~v~~L~~e~~~l~~~~~~~~ke~~~lee~~ 1014 (1080)
T 2dfs_A 985 RVLSLQEEIAKLRKELHQTQTEKKTIEEWA 1014 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 33
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=87.21 E-value=5.1 Score=33.97 Aligned_cols=51 Identities=12% Similarity=0.203 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 020103 150 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQ 200 (331)
Q Consensus 150 kqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEq 200 (331)
.+.+++++.++..|..+...+..++..+.++...|..++.+|..++..|+.
T Consensus 81 ~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 81 SLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666666677777777666666643
No 34
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=87.15 E-value=3.9 Score=49.73 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 157 ERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVER 218 (331)
Q Consensus 157 E~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqr 218 (331)
+.+++..+.+...|.++++.|+.++..+..|...|+.+++..+........|.+.|..|-.|
T Consensus 2027 ~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~R 2088 (3245)
T 3vkg_A 2027 KLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGR 2088 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 33444455556666667777777777788888888888887777766666677777655433
No 35
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=86.94 E-value=3.7 Score=30.12 Aligned_cols=42 Identities=26% Similarity=0.328 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLR 194 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~R 194 (331)
.+.|-++|..|..||+.|+.++..-..+...|+.|-..+|.-
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKev 46 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEV 46 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHH
Confidence 467888999999999999999888777777777776666543
No 36
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=86.89 E-value=1.4 Score=34.65 Aligned_cols=41 Identities=37% Similarity=0.445 Sum_probs=24.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 179 RDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERL 219 (331)
Q Consensus 179 r~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrL 219 (331)
.+...+..+|.+|+.+|+.++++..=....-+.++.|+.++
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l 53 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRA 53 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445667777788888877766543333445555555544
No 37
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=86.80 E-value=3.2 Score=35.04 Aligned_cols=17 Identities=35% Similarity=0.411 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHHHHH
Q 020103 181 TTDLSTENTELKLRLQA 197 (331)
Q Consensus 181 ~~~L~~EN~eLK~RLqa 197 (331)
...|..|+..|++.|+.
T Consensus 73 vqeLqgEI~~Lnq~Lq~ 89 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQD 89 (121)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 38
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=86.21 E-value=9.9 Score=33.23 Aligned_cols=50 Identities=14% Similarity=0.252 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
-|..|+.++..|+.++..|...+..-.+.+..+..|...|..++..++..
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~k 118 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQK 118 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555544444444444444444444444444444
No 39
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=85.85 E-value=4.3 Score=28.97 Aligned_cols=44 Identities=27% Similarity=0.430 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 155 ELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 155 eLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
+||.+|..|+.-...|..+++-|-.+ ..+-...||+||..||.+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae---~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAE---YNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhc
Confidence 45555555555444444444333222 233456789999888765
No 40
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=85.85 E-value=7.5 Score=30.86 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=23.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 020103 175 TLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEMMT 228 (331)
Q Consensus 175 t~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~atge~~~ 228 (331)
..++.....|..||..|+.+|+. |+.|+..|+....++|+
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~--------------L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQ--------------LSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHCcH
Confidence 34445566677777777665554 55667777777777664
No 41
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=85.49 E-value=7.2 Score=42.66 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 195 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RL 195 (331)
+.+|+.++..++.....+...+..++.+...|..+...++.++
T Consensus 859 l~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L 901 (1184)
T 1i84_S 859 MQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKL 901 (1184)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555444444444444444444444444444333
No 42
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=84.42 E-value=16 Score=32.77 Aligned_cols=29 Identities=14% Similarity=0.297 Sum_probs=18.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020103 174 LTLFQRDTTDLSTENTELKLRLQAMEQQA 202 (331)
Q Consensus 174 lt~Lqr~~~~L~~EN~eLK~RLqaLEqq~ 202 (331)
++.|+.++..|...+..|+.+|-.||+..
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~N 118 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQAN 118 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55556666666666666666666666553
No 43
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=84.25 E-value=8 Score=30.28 Aligned_cols=68 Identities=16% Similarity=0.211 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 154 SELERKVQTLQTEATTLSAQLTLFQRD--------------TTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERL 219 (331)
Q Consensus 154 eeLE~kVq~Lq~ENs~L~~qlt~Lqr~--------------~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrL 219 (331)
.+|..++..+..++..|..++.-++.. ...++++-..||.-+..+.....=-++..+.|++|+.-|
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555554443322 223334444455544444444333335667778887776
Q ss_pred HH
Q 020103 220 KV 221 (331)
Q Consensus 220 k~ 221 (331)
|.
T Consensus 83 kk 84 (86)
T 3swk_A 83 KK 84 (86)
T ss_dssp TT
T ss_pred hh
Confidence 53
No 44
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=84.12 E-value=14 Score=29.27 Aligned_cols=55 Identities=11% Similarity=0.114 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020103 145 SKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAME 199 (331)
Q Consensus 145 SReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLE 199 (331)
-+..-....+.+|.+++.+...+..+..++..|++.+..|..+-..+..+|....
T Consensus 17 e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~ 71 (101)
T 3u59_A 17 DKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQ 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566677777777777777777777777777666666666555555443
No 45
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=84.09 E-value=1.2 Score=29.97 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQ 178 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lq 178 (331)
+..||.||..|-.+|+.|..++.-|+
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45789999999999998888887654
No 46
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=84.08 E-value=6.5 Score=42.98 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 020103 184 LSTENTELKLRLQA 197 (331)
Q Consensus 184 L~~EN~eLK~RLqa 197 (331)
+..+...|+.+++.
T Consensus 918 l~~~~~~Le~~l~e 931 (1184)
T 1i84_S 918 LAAKKQELEEILHE 931 (1184)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 47
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=84.06 E-value=1.4 Score=29.78 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQ 178 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lq 178 (331)
++..||.+|..|-.+|+.|..++.-|+
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 467889999988888888887776554
No 48
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=83.99 E-value=26 Score=33.43 Aligned_cols=67 Identities=18% Similarity=0.284 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLK 220 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk 220 (331)
+.|.+++....+++++.++....+-.|+.. |..+-..-..|++.+|.+..-..+..+.+.+||.++|
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 404 QELTEAQKGFQDVEAQAATANHTVMALMAS---LDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHhhhcchhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334455555555555555555555555443 3333333335778777776656666777778888886
No 49
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=83.45 E-value=5.3 Score=28.31 Aligned_cols=16 Identities=31% Similarity=0.385 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHh
Q 020103 208 LNEALKKEVERLKVAT 223 (331)
Q Consensus 208 lne~Lk~EVqrLk~at 223 (331)
+...|.+||..||..+
T Consensus 32 liaylekeianlrkki 47 (49)
T 3he5_A 32 LIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4456667777776654
No 50
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=83.29 E-value=8.5 Score=29.94 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=18.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 020103 176 LFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEM 226 (331)
Q Consensus 176 ~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~atge~ 226 (331)
.++.....|..||..|+.+|+. |+.|+..|+....+.
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~~--------------L~~E~~~Lr~ll~q~ 76 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVEQ--------------LSRELSTLRNLFKQL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHC
Confidence 3344455566666666554443 445566666544443
No 51
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=83.06 E-value=13 Score=30.44 Aligned_cols=69 Identities=22% Similarity=0.232 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLR--------------LQAMEQQAQLRDALNEALKKEVE 217 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~R--------------LqaLEqq~qLrdalne~Lk~EVq 217 (331)
-+..|..++..|+.|+..|..++..|+-+. |+..|+-. ..+...+. ..-..+.|++||+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L-----e~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~--~~~~~e~Lq~E~e 85 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQL-----ERRALQGDYDQSRTKVLHMSLNPTSVARQR--LREDHSQLQAECE 85 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHSSCCSCCCTTTEEEEEESSCHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhccccCCccCeeeeecCChHHHHHHH--HHHHHHHHHHHHH
Confidence 455666666666666666666666554332 22111000 01111010 1135678889999
Q ss_pred HHHHHhccCC
Q 020103 218 RLKVATGEMM 227 (331)
Q Consensus 218 rLk~atge~~ 227 (331)
+||..+-.+-
T Consensus 86 rLr~~v~~lE 95 (100)
T 1go4_E 86 RLRGLLRAME 95 (100)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHHHh
Confidence 9998876553
No 52
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=82.46 E-value=4.8 Score=31.42 Aligned_cols=46 Identities=22% Similarity=0.340 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 020103 155 ELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQ 203 (331)
Q Consensus 155 eLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~q 203 (331)
+||.+|..|+.-...|..+++-|-.+ ...-...||+||..||.+..
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaE---y~ssQ~KLKqRit~LE~~~~ 49 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAE---YESMQQKLKQRLTKVEKFLK 49 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence 45555555555444444444433222 33445678999999988743
No 53
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=82.20 E-value=17 Score=28.93 Aligned_cols=77 Identities=16% Similarity=0.162 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 142 AARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVER 218 (331)
Q Consensus 142 ArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqr 218 (331)
|..--..-..-+..+|.+...+..++..|..++..++.++..+...-...+..|..-+....-.++.+..|..-|+-
T Consensus 21 a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriql 97 (101)
T 3u1c_A 21 ALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444555666666666666666666666666666555555555555555544444444455555554443
No 54
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=81.98 E-value=2.6 Score=30.55 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020103 169 TLSAQLTLFQRDTTDLSTENTELKLRL 195 (331)
Q Consensus 169 ~L~~qlt~Lqr~~~~L~~EN~eLK~RL 195 (331)
.|..++..|+.++..|..++.+|+.+|
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445556666666554
No 55
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=81.73 E-value=2 Score=29.06 Aligned_cols=27 Identities=7% Similarity=0.153 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQ 178 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lq 178 (331)
++..||.||..|-.++..|..++.-|+
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 467899999999999888888877654
No 56
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=81.53 E-value=22 Score=29.61 Aligned_cols=11 Identities=36% Similarity=0.555 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 020103 209 NEALKKEVERL 219 (331)
Q Consensus 209 ne~Lk~EVqrL 219 (331)
|+.|+.|++.|
T Consensus 70 ~e~Lr~e~~~l 80 (120)
T 3i00_A 70 CEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 57
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=81.18 E-value=29 Score=30.71 Aligned_cols=10 Identities=50% Similarity=0.793 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 020103 211 ALKKEVERLK 220 (331)
Q Consensus 211 ~Lk~EVqrLk 220 (331)
.|..|+.++|
T Consensus 101 ~L~~El~~~k 110 (168)
T 3o0z_A 101 SLQEEVKHLK 110 (168)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 58
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=81.13 E-value=2.7 Score=28.71 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQR 179 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lqr 179 (331)
.+..||.+|..|-.++..|..++.-|+.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4678999999998888888888776554
No 59
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=81.05 E-value=27 Score=30.39 Aligned_cols=70 Identities=20% Similarity=0.284 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 020103 157 ERKVQTLQTEATTLSAQL-TLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEM 226 (331)
Q Consensus 157 E~kVq~Lq~ENs~L~~ql-t~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~atge~ 226 (331)
|.....++.|...|.+.+ .....-...-..+...++.+...|+.+..=.+.+.+.|...+..||...-.+
T Consensus 78 E~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m 148 (154)
T 2ocy_A 78 EEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSL 148 (154)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555554433 2222222222333444555555555555556778889999999999866544
No 60
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=80.84 E-value=1.9 Score=32.95 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020103 150 ARYISELERKVQTLQTEATTLSA 172 (331)
Q Consensus 150 kqyleeLE~kVq~Lq~ENs~L~~ 172 (331)
..||..|+.+++.|+.+...|..
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~ 68 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKR 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666665554444433
No 61
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=80.59 E-value=0.77 Score=37.96 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 181 TTDLSTENTELKLRLQAMEQQAQL 204 (331)
Q Consensus 181 ~~~L~~EN~eLK~RLqaLEqq~qL 204 (331)
...|..+|..|..+|+.||.+++.
T Consensus 93 ~~~l~~~n~~L~~riqeLE~~a~~ 116 (118)
T 4ati_A 93 QKKLEHANRHLLLRVQELEMQARA 116 (118)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445888999999999999988754
No 62
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=80.46 E-value=17 Score=36.69 Aligned_cols=22 Identities=9% Similarity=0.330 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020103 157 ERKVQTLQTEATTLSAQLTLFQ 178 (331)
Q Consensus 157 E~kVq~Lq~ENs~L~~qlt~Lq 178 (331)
..+++.|+.+.+.++.++..+.
T Consensus 83 ~~~~~~l~~~rn~~sk~i~~~~ 104 (501)
T 1wle_A 83 REQIRSLEEEKEAVTEAVRALV 104 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555555555555555433
No 63
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=80.38 E-value=8.5 Score=29.76 Aligned_cols=39 Identities=18% Similarity=0.348 Sum_probs=19.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 180 DTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVER 218 (331)
Q Consensus 180 ~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqr 218 (331)
+...+..+|..|+.+|+.++++..=....-+.++.|+.+
T Consensus 8 kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~ 46 (72)
T 3cve_A 8 KLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKT 46 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666655542222233344444433
No 64
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=79.96 E-value=5.4 Score=28.97 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=15.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020103 174 LTLFQRDTTDLSTENTELKLRLQAME 199 (331)
Q Consensus 174 lt~Lqr~~~~L~~EN~eLK~RLqaLE 199 (331)
+..|+..+..|..+|..|+.++..|+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~ 49 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLR 49 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666555543
No 65
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=79.90 E-value=23 Score=29.45 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=32.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHH
Q 020103 137 ANRQSAARSKERKARYISELERKVQTLQT---EATTLSAQLTLFQRDTTDL 184 (331)
Q Consensus 137 aNRESArRSReRKkqyleeLE~kVq~Lq~---ENs~L~~qlt~Lqr~~~~L 184 (331)
.|=.+|-..=..|+..+++|..++..+.. .+.-|.+|+..+..++..=
T Consensus 31 ~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aE 81 (110)
T 2v4h_A 31 QQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAE 81 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 33455566666678888888888777777 5556777777766665443
No 66
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=79.56 E-value=7.3 Score=30.35 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=17.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 020103 174 LTLFQRDTTDLSTENTELKLRLQAMEQ 200 (331)
Q Consensus 174 lt~Lqr~~~~L~~EN~eLK~RLqaLEq 200 (331)
...|.-+...+..||+.|..||+.|.+
T Consensus 48 ~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 48 TERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 344555666788899999999888754
No 67
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=79.42 E-value=3.5 Score=33.70 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLT 175 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt 175 (331)
|+.||.+...|..++..|..++.
T Consensus 21 i~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 21 VEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555543
No 68
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=79.06 E-value=2.4 Score=39.74 Aligned_cols=13 Identities=46% Similarity=0.521 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHH
Q 020103 209 NEALKKEVERLKV 221 (331)
Q Consensus 209 ne~Lk~EVqrLk~ 221 (331)
.+.|++|+++|+.
T Consensus 84 l~~LkeElerL~s 96 (251)
T 3m9b_A 84 LLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcC
Confidence 4556778888775
No 69
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=78.91 E-value=2.2 Score=29.17 Aligned_cols=28 Identities=18% Similarity=0.400 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQR 179 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lqr 179 (331)
.+..||.||..|-.++..|..++.-|+.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3567899999998888888887776554
No 70
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=78.77 E-value=3.8 Score=27.53 Aligned_cols=26 Identities=12% Similarity=0.273 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQ 178 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lq 178 (331)
+..||.||..|-.+|..|..++.-|+
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 56789999999888888888777554
No 71
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=78.06 E-value=2.8 Score=28.33 Aligned_cols=28 Identities=14% Similarity=0.278 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQR 179 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lqr 179 (331)
.+..||.+|+.|-.+|..|..++.-|+.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4567999999999888888887776543
No 72
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=77.94 E-value=2.8 Score=28.32 Aligned_cols=27 Identities=11% Similarity=0.349 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQ 178 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lq 178 (331)
++..||.||..|-.++..|..++.-|+
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHH
Confidence 457899999999999988888877654
No 73
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=77.93 E-value=37 Score=30.04 Aligned_cols=62 Identities=21% Similarity=0.320 Sum_probs=42.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020103 134 RILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA 202 (331)
Q Consensus 134 RiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~ 202 (331)
.+-+-=+.=++.|.+--+.+.+|+.++..|+.|...+....+. +..+|+.|-.+|..+|..+
T Consensus 73 ~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k-------~~~e~r~L~Ekl~~lEKe~ 134 (168)
T 3o0z_A 73 QLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEK-------VEGERKEAQDMLNHSEKEK 134 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 3444444556777777788888888888888877777665553 5566777777776666654
No 74
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=77.85 E-value=13 Score=27.72 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=23.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 136 LANRQSAARSKERKARYISELERKVQTLQTEATTL 170 (331)
Q Consensus 136 LaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L 170 (331)
-+||.+++++|.|=++.++-...-...-..||..|
T Consensus 7 yknr~asrk~rakfkn~lqh~r~vaaaks~en~rl 41 (63)
T 2c9l_Y 7 YKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRL 41 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHH
Confidence 58999999999998876665544444333444333
No 75
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=77.82 E-value=19 Score=35.71 Aligned_cols=46 Identities=13% Similarity=0.315 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHH
Q 020103 156 LERKVQTLQTEATTLSAQLTLFQRD---TTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 156 LE~kVq~Lq~ENs~L~~qlt~Lqr~---~~~L~~EN~eLK~RLqaLEqq 201 (331)
|..+++.|+.+.+.++.++..+.+. ...|..+-.+|+.+|..++.+
T Consensus 43 ~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 91 (455)
T 2dq0_A 43 KLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENE 91 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666554322 344555566666666555443
No 76
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=77.75 E-value=20 Score=28.14 Aligned_cols=46 Identities=26% Similarity=0.279 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020103 157 ERKVQTLQTEATTLSAQL-------TLFQRDTTDLSTENTELKLRLQAMEQQA 202 (331)
Q Consensus 157 E~kVq~Lq~ENs~L~~ql-------t~Lqr~~~~L~~EN~eLK~RLqaLEqq~ 202 (331)
-++|..|-.||+.|...- ..|-.+.+.|..|+..|+..+.++.+..
T Consensus 8 gkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~ 60 (77)
T 2w83_C 8 GREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAK 60 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 345555666666555433 3445667777788888887777776654
No 77
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=77.70 E-value=24 Score=27.89 Aligned_cols=54 Identities=19% Similarity=0.259 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 163 LQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEV 216 (331)
Q Consensus 163 Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EV 216 (331)
|-.|.+.|+-+|+.+..+...-+..-..-|..|..|.++.-.+++..+.|+.++
T Consensus 24 L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 24 LLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333333344444433333222222233334455555555555666555555543
No 78
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=77.61 E-value=4.3 Score=27.27 Aligned_cols=26 Identities=12% Similarity=0.184 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQ 178 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lq 178 (331)
+..||.||..|-.++..|..++.-|+
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56799999999999888888877554
No 79
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=77.45 E-value=5.3 Score=30.52 Aligned_cols=41 Identities=20% Similarity=0.391 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 154 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 154 eeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
+.-+..+..|+. ++..|+.....|..||..|+.++..|..+
T Consensus 25 eRK~~~i~~LE~-------~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 25 KRKEDHLKALET-------QVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555444 44444455556777888887777666443
No 80
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=77.34 E-value=7.4 Score=37.93 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=22.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020103 172 AQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVAT 223 (331)
Q Consensus 172 ~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~at 223 (331)
.++..+++....+..++.+|+.++... +.+...|..+++.||..+
T Consensus 17 ~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~rr~l~n~~~elkgnI 61 (403)
T 4etp_A 17 EKIAALKEKIKDTELGMKELNEILIKE-------ETVRRTLHNELQELRGNI 61 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHcCCCe
Confidence 333333333334445555555444433 233455667777777543
No 81
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=77.24 E-value=30 Score=28.65 Aligned_cols=49 Identities=18% Similarity=0.267 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
+..|+.++..|+..+..|...+-.|...++.|....+..-.-|+.|+..
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k 85 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQR 85 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHH
Confidence 4445555555555555555555555555555555555554445544433
No 82
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=77.10 E-value=9.7 Score=27.49 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020103 157 ERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTEL 191 (331)
Q Consensus 157 E~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eL 191 (331)
|.++..|..-|..|..+++.|+..|..++.|+..|
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL 37 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERL 37 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 56777788888888888888888887777776655
No 83
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=76.93 E-value=18 Score=29.68 Aligned_cols=28 Identities=11% Similarity=0.293 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRD 180 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~ 180 (331)
|..|+.+++.++..+..|...+..++..
T Consensus 45 iq~L~~el~~l~~~~~~LE~~l~e~e~~ 72 (129)
T 3tnu_B 45 IQRLRAEIDNVKKQCANLQNAIADAEQR 72 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 5556666666666666666666555544
No 84
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=76.47 E-value=3.3 Score=28.00 Aligned_cols=26 Identities=12% Similarity=0.280 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQ 178 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lq 178 (331)
+..||.||..|-.+|..|..++.-|+
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56789999999998888888877554
No 85
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=76.30 E-value=4.8 Score=31.08 Aligned_cols=31 Identities=16% Similarity=0.151 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 149 KARYISELERKVQTLQTEATTLSAQLTLFQR 179 (331)
Q Consensus 149 KkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr 179 (331)
-..||..|+.+...|+.++..|..++..|+.
T Consensus 45 A~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~ 75 (80)
T 1nlw_A 45 AKLHIKKLEDSDRKAVHQIDQLQREQRHLKR 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888887777777766655554444433
No 86
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=76.22 E-value=14 Score=26.13 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLT 175 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt 175 (331)
.+..||.+|..|+.||.+|..+.-
T Consensus 4 lvaqlenevaslenenetlkkknl 27 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNL 27 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcc
Confidence 466788888888888888877653
No 87
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=75.88 E-value=70 Score=32.21 Aligned_cols=97 Identities=14% Similarity=0.075 Sum_probs=52.4
Q ss_pred ccCChHHHHHHHHhHHHH-HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---------
Q 020103 125 WTVDPKRAKRILANRQSA-ARSKERK-------ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTE--------- 187 (331)
Q Consensus 125 a~~D~KR~KRiLaNRESA-rRSReRK-------kqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~E--------- 187 (331)
..+|.|-+| .|.+.. +..+.|+ ...+.+|..+...++.+...|.++...+.++...+...
T Consensus 39 pmlD~~~ir---~n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~ 115 (501)
T 1wle_A 39 PLLDMESLC---AYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQD 115 (501)
T ss_dssp CCCCHHHHH---HSHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGC
T ss_pred CccCHHHHH---hCHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccc
Confidence 456766655 466654 3333333 24566777777777888888877777777776655432
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020103 188 --NTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATG 224 (331)
Q Consensus 188 --N~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~atg 224 (331)
-.+|+.++..+..+..-.+.....+.+++..+-..++
T Consensus 116 ~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iP 154 (501)
T 1wle_A 116 PQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLP 154 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2355555555544433222333334444444333333
No 88
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=75.39 E-value=39 Score=30.44 Aligned_cols=67 Identities=10% Similarity=0.143 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA-QLRDALNEALKKEVERLK 220 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~-qLrdalne~Lk~EVqrLk 220 (331)
+.+..|..++..|+.+.+.|.+++..+-... -..|+.-|+.-+..|...+ +||+ +-..|-.|++...
T Consensus 139 ~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K--~~~E~~L~~KF~~lLNeKK~KIR~-lq~~Ll~~~~~~~ 206 (213)
T 1ik9_A 139 AKNEHLQKENERLLRDWNDVQGRFEKAVSAK--EALETDLYKRFILVLNEKKTKIRS-LHNKLLNAAQERE 206 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHhh
Confidence 3344444445555555555555444443332 2235555666666666654 5553 3334444444443
No 89
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=75.13 E-value=23 Score=29.37 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020103 171 SAQLTLFQRDTTDLSTENTELKLRLQAMEQQA 202 (331)
Q Consensus 171 ~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~ 202 (331)
...++.|+.++..|..+|..|+.+|-.|||..
T Consensus 34 ~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~N 65 (111)
T 2v66_B 34 YKQVSVLEDDLSQTRAIKEQLHKYVRELEQAN 65 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566778888888888888888888888774
No 90
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=75.00 E-value=6.2 Score=26.01 Aligned_cols=28 Identities=18% Similarity=0.437 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRD 180 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~ 180 (331)
+..||.+|.+.+.||-.|..++..|+.+
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 3457777777777777776666655543
No 91
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=74.98 E-value=8.3 Score=37.85 Aligned_cols=55 Identities=20% Similarity=0.156 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 161 QTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVA 222 (331)
Q Consensus 161 q~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~a 222 (331)
..|+.|...|..++..++++...+..|+.+++++|... +.+...|..+++.||..
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~-------~~~rr~l~n~~~~l~gn 60 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQS-------NMERKELHNTVMDLRDN 60 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhCCC
Confidence 34444555555555555555555666666665554332 23345566677777643
No 92
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=74.68 E-value=12 Score=33.86 Aligned_cols=45 Identities=24% Similarity=0.298 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA 202 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~ 202 (331)
+.++.-+.-|+.|+.||..|..++.. ...|+..|+.+|+.++.+.
T Consensus 13 ~ql~~ad~LV~~L~~En~~L~~ql~~-------k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 13 QQIDSADLLVANLVNENFVLSEKLDT-------KATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp -------CHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhh
Confidence 34444555677777777777777664 4456666666666666654
No 93
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=74.48 E-value=6.5 Score=31.56 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020103 182 TDLSTENTELKLRLQAM 198 (331)
Q Consensus 182 ~~L~~EN~eLK~RLqaL 198 (331)
..|+.++..|..+++.|
T Consensus 51 ~~LE~e~~~L~~e~~~L 67 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQL 67 (90)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555554444444
No 94
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=74.27 E-value=17 Score=30.02 Aligned_cols=29 Identities=17% Similarity=0.178 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQRD 180 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lqr~ 180 (331)
.|..|+.+++.+...+..|...+..++..
T Consensus 46 ~iq~L~~el~~l~~~~~sLE~~l~e~e~~ 74 (131)
T 3tnu_A 46 TMQNLEIELQSQLSMKASLENSLEETKGR 74 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34556666666666666666666555544
No 95
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=74.01 E-value=50 Score=29.70 Aligned_cols=70 Identities=6% Similarity=0.069 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 020103 150 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDA----LNEALKKEVERLKV 221 (331)
Q Consensus 150 kqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrda----lne~Lk~EVqrLk~ 221 (331)
...+.+|+.++..++.....+..++..++.+...+..+-..++.++...+.+. ..+ ..++|..|++.++.
T Consensus 31 p~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l--~~v~~~kE~~aL~kEie~~~~ 104 (256)
T 3na7_A 31 RKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM--SEIKSERELRSLNIEEDIAKE 104 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HccCCHHHHHHHHHHHHHHHH
Confidence 36688888888888888888888888888888888888888888877776543 111 34556666655543
No 96
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=73.92 E-value=5.5 Score=28.06 Aligned_cols=24 Identities=42% Similarity=0.437 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQL 174 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~ql 174 (331)
....+||.+|.+|+.||..|+.-+
T Consensus 17 ~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 17 NKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHh
Confidence 346788888988888888877543
No 97
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=73.52 E-value=16 Score=26.84 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=17.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 174 LTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 174 lt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
...|+.+...|..+|.+|+.++..|+.+
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666667777776666665444
No 98
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=73.31 E-value=28 Score=28.23 Aligned_cols=57 Identities=18% Similarity=0.207 Sum_probs=37.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 020103 136 LANRQSAARSKERKARYISELERKVQTLQ---TEATTLSAQLTLFQRDTTDLSTENTELK 192 (331)
Q Consensus 136 LaNRESArRSReRKkqyleeLE~kVq~Lq---~ENs~L~~qlt~Lqr~~~~L~~EN~eLK 192 (331)
..|-.+|-..=..|+..|++|-..+..++ ..+.-|.+|+..+..++..=.+.-..+.
T Consensus 8 ~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~ 67 (94)
T 3jsv_C 8 RQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLV 67 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666668888888887777776 5566677777777777655444433333
No 99
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=72.39 E-value=56 Score=31.88 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDT--------TDLSTENTELKLRLQAME 199 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~--------~~L~~EN~eLK~RLqaLE 199 (331)
..+.+|..+...++.+...|.++...+.++. ..|..+-.+|+.++..++
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLE 84 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444332 334444444444444443
No 100
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=71.44 E-value=45 Score=28.02 Aligned_cols=31 Identities=29% Similarity=0.363 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 020103 154 SELERKVQTLQTEATTLSAQLTLFQRDTTDL 184 (331)
Q Consensus 154 eeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L 184 (331)
.+|+.+++.|...|..|..++..+..++..|
T Consensus 53 ~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 53 EELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666665555555333
No 101
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=71.25 E-value=4.7 Score=29.45 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=15.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 174 LTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 174 lt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
+..|+..+..|..+|..|+.++..|+.+
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e 51 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQ 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666655554333
No 102
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=71.13 E-value=5.7 Score=37.20 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRD 180 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~ 180 (331)
+.+|+.++..|+..|..|...+..++++
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~E 83 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQ 83 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555444444333
No 103
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=71.08 E-value=11 Score=29.47 Aligned_cols=35 Identities=26% Similarity=0.388 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 150 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 150 kqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
..||..|+.+...|+.+.. .|..+|..|+.+|+.|
T Consensus 51 ~~YI~~L~~~~~~l~~~~~--------------~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 51 TAYILSVQAEEQKLISEED--------------LLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHh
Confidence 3566666666555555443 3445566666666554
No 104
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=70.78 E-value=7.9 Score=26.52 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 020103 165 TEATTLSAQLTLFQRDTTDLSTENTELK 192 (331)
Q Consensus 165 ~ENs~L~~qlt~Lqr~~~~L~~EN~eLK 192 (331)
.||.+|...++.-+.+...|..||.+|+
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 5788899999988888999999998884
No 105
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=70.61 E-value=48 Score=31.77 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 164 QTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 164 q~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
+.|...+....+..+++...+..||..|+.-++.+
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (487)
T 3oja_A 427 QSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEA 461 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhh
Confidence 33333334444444444445555555555544444
No 106
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=70.53 E-value=42 Score=27.37 Aligned_cols=31 Identities=19% Similarity=0.330 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDT 181 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~ 181 (331)
.||.+|..++..+..++..|..++..++...
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~ 50 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDI 50 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777776666555443
No 107
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=70.53 E-value=42 Score=27.28 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
..+..|+.++.....+...|...+..-+........++..+...|+.|
T Consensus 12 e~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL 59 (97)
T 2eqb_B 12 EDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666555555555555555555555554
No 108
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=70.46 E-value=16 Score=37.65 Aligned_cols=42 Identities=12% Similarity=0.248 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 020103 145 SKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLST 186 (331)
Q Consensus 145 SReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~ 186 (331)
....+.+|.++||++++.|+.++..-..+|..||..+..+..
T Consensus 104 NdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~ 145 (562)
T 3ghg_A 104 RDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLV 145 (562)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555566666666666555544555555544443333
No 109
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=70.25 E-value=73 Score=31.48 Aligned_cols=75 Identities=15% Similarity=0.080 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLST---ENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGE 225 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~---EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~atge 225 (331)
..+.+|..+...++.+...|.++...+.++...+.. +-.+|+.++..+..+..-.+.....+.+++..+-..++.
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN 108 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPN 108 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 455567777777777777777777777766655432 124566666555554433333334444444444333333
No 110
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=69.84 E-value=21 Score=25.83 Aligned_cols=15 Identities=27% Similarity=0.563 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 020103 156 LERKVQTLQTEATTL 170 (331)
Q Consensus 156 LE~kVq~Lq~ENs~L 170 (331)
|..++..|...|..|
T Consensus 14 l~~~l~~L~~rN~rL 28 (51)
T 3m91_A 14 LEARIDSLAARNSKL 28 (51)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 111
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=69.56 E-value=12 Score=27.90 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020103 157 ERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTEL 191 (331)
Q Consensus 157 E~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eL 191 (331)
|.++..|..-|-.|..++..|+.+|...+.|+..|
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL 44 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERL 44 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677777777777777777776666666555
No 112
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=69.36 E-value=41 Score=34.72 Aligned_cols=17 Identities=24% Similarity=0.208 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhcc
Q 020103 209 NEALKKEVERLKVATGE 225 (331)
Q Consensus 209 ne~Lk~EVqrLk~atge 225 (331)
.+.+..+|+||.+++.-
T Consensus 140 Ledq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 140 VRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445678888877743
No 113
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=69.33 E-value=46 Score=27.33 Aligned_cols=13 Identities=31% Similarity=0.470 Sum_probs=9.0
Q ss_pred cCChHHHHHHHHh
Q 020103 126 TVDPKRAKRILAN 138 (331)
Q Consensus 126 ~~D~KR~KRiLaN 138 (331)
.+++|-.|=|++|
T Consensus 6 EvEEKyrKAMVsn 18 (103)
T 4h22_A 6 EVEEKYKKAMVSN 18 (103)
T ss_dssp --CCTHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3677888888887
No 114
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=69.21 E-value=64 Score=28.88 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
+..|+.++..|+..+..|...|..|...++.|....+.+-.-++.++..
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~k 138 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQR 138 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHH
Confidence 6677777777777777777777777777777777777766655555443
No 115
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=68.70 E-value=41 Score=26.52 Aligned_cols=67 Identities=18% Similarity=0.217 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 150 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEV 216 (331)
Q Consensus 150 kqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EV 216 (331)
..-+..+|.+...+..+...|..++..++.++..+...-..+...|...+..+.-.++-+.+|..-|
T Consensus 29 e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRri 95 (101)
T 3u59_A 29 EADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555555555555444444444444444443333333333333333333
No 116
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=68.69 E-value=59 Score=28.28 Aligned_cols=49 Identities=14% Similarity=0.189 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAME 199 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLE 199 (331)
..+..|+.++.....+...|..++..-+........++..+...|+.|.
T Consensus 44 ~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLT 92 (154)
T 2ocy_A 44 EDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 92 (154)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777788888888877777666666666667777766666653
No 117
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=68.02 E-value=37 Score=25.77 Aligned_cols=43 Identities=16% Similarity=0.192 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 159 KVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 159 kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
...........+..++.........+..|-..|..+++.++.+
T Consensus 14 e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~e 56 (81)
T 1ic2_A 14 DKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDE 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444445555555555555444
No 118
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=67.92 E-value=50 Score=27.14 Aligned_cols=10 Identities=20% Similarity=0.464 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q 020103 212 LKKEVERLKV 221 (331)
Q Consensus 212 Lk~EVqrLk~ 221 (331)
|..||...|.
T Consensus 117 Ld~EIatYRk 126 (131)
T 3tnu_A 117 LEQEIATYRR 126 (131)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455555443
No 119
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=67.44 E-value=81 Score=32.28 Aligned_cols=78 Identities=21% Similarity=0.267 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 020103 142 AARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRD---ALNEALKKEVER 218 (331)
Q Consensus 142 ArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrd---alne~Lk~EVqr 218 (331)
++..+++.++.-.-+|.+-+.++.....|..++..=++ ..+...++.|..+|+. |...|++ ...+.|..||+.
T Consensus 503 ~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~--~~~~e~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~ei~~ 578 (592)
T 1f5n_A 503 AKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRV--QLLKEQERTLALKLQE--QEQLLKEGFQKESRIMKNEIQD 578 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH--HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555666666666666666665443221 2233344455444443 2223332 367788899999
Q ss_pred HHHHh
Q 020103 219 LKVAT 223 (331)
Q Consensus 219 Lk~at 223 (331)
|+...
T Consensus 579 l~~~~ 583 (592)
T 1f5n_A 579 LQTKM 583 (592)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 98873
No 120
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=67.36 E-value=24 Score=32.47 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=43.6
Q ss_pred ccCChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 020103 125 WTVDPKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLST 186 (331)
Q Consensus 125 a~~D~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~ 186 (331)
...+...+|+-++.|-.+-++ .+..|+.+++..+.|++++.+++...+++...+..
T Consensus 158 ~~asde~Ik~yLa~R~~~lK~------kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~ 213 (228)
T 3q0x_A 158 RPGNDSVVKQFLAFRLSEVKG------TCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLRE 213 (228)
T ss_dssp EECCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999988887664 46788999999999999999988877766554443
No 121
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=67.12 E-value=25 Score=34.42 Aligned_cols=28 Identities=18% Similarity=0.298 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 020103 158 RKVQTLQTEATTLSAQLTLFQRDTTDLS 185 (331)
Q Consensus 158 ~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~ 185 (331)
.++..|-.+...+..++..|+.+...+.
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~s 55 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVA 55 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555544444444443
No 122
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=66.42 E-value=8.4 Score=29.58 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=9.3
Q ss_pred HHHHhHHHHHHHHHHHHHHH
Q 020103 177 FQRDTTDLSTENTELKLRLQ 196 (331)
Q Consensus 177 Lqr~~~~L~~EN~eLK~RLq 196 (331)
|+.+...|..||..|+.+++
T Consensus 55 Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 55 LQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555544443
No 123
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=66.07 E-value=56 Score=27.11 Aligned_cols=46 Identities=15% Similarity=0.245 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 146 KERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 146 ReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
+..-+.|+..|+.+|..|+.+...-..+ ......||..|+..++.+
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e~r~~-------~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAEQQHL-------RQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 4455556666666666555554443332 334455566665555544
No 124
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=65.82 E-value=36 Score=24.80 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=19.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 174 LTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 174 lt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
+..|+.++..|..+|..|+..+..|..+
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e 52 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777888888887777665444
No 125
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=65.43 E-value=39 Score=26.63 Aligned_cols=24 Identities=8% Similarity=0.349 Sum_probs=10.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Q 020103 172 AQLTLFQRDTTDLSTENTELKLRL 195 (331)
Q Consensus 172 ~qlt~Lqr~~~~L~~EN~eLK~RL 195 (331)
..+..|+++...+..+|..|...+
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~~e~ 79 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVEVER 79 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443333
No 126
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=65.38 E-value=36 Score=24.69 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTL 176 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~ 176 (331)
+.+|..+|++|......|+..+..
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~a 29 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANA 29 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555444444444444433
No 127
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=65.11 E-value=0.89 Score=36.78 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=20.7
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHH
Q 020103 129 PKRAKRILANRQSAARSKERKAR 151 (331)
Q Consensus 129 ~KR~KRiLaNRESArRSReRKkq 151 (331)
-+.+||..+||.+|++.|+||..
T Consensus 65 IrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 65 VRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp HHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 57889999999999999999864
No 128
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=64.86 E-value=23 Score=34.48 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 020103 150 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQ 196 (331)
Q Consensus 150 kqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLq 196 (331)
+..+.+|+.++..|+.++..+..++..+++++...+.+.+.|-.+++
T Consensus 9 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~ 55 (403)
T 4etp_A 9 KEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQ 55 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555554444444444433333
No 129
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=64.57 E-value=5.2 Score=31.41 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Q 020103 169 TLSAQLTLFQRDTTDLSTENTEL 191 (331)
Q Consensus 169 ~L~~qlt~Lqr~~~~L~~EN~eL 191 (331)
.|+.+|..|..++..|+.||+.|
T Consensus 19 vLKe~I~EL~e~~~qLE~EN~~L 41 (78)
T 1dip_A 19 ILKEQIRELVEKNSQLERENTLL 41 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555555555
No 130
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=64.29 E-value=61 Score=32.69 Aligned_cols=46 Identities=11% Similarity=0.164 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHH
Q 020103 156 LERKVQTLQTEATTLSAQLTLFQRD---TTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 156 LE~kVq~Lq~ENs~L~~qlt~Lqr~---~~~L~~EN~eLK~RLqaLEqq 201 (331)
|..+++.|+.+.+.++.++..+.+. ...|..|-.+|+.+|..++.+
T Consensus 45 ~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~ 93 (485)
T 3qne_A 45 LRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEK 93 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666666666666655432 345666667777776666544
No 131
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=64.24 E-value=50 Score=25.81 Aligned_cols=34 Identities=15% Similarity=0.274 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLST 186 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~ 186 (331)
+-+|-.++..|+.|+..|+.++..++.+...+..
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4556666666666666666666655554444433
No 132
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=64.06 E-value=47 Score=25.53 Aligned_cols=51 Identities=14% Similarity=0.213 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---H---HHhHHHHHHHHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLF---Q---RDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~L---q---r~~~~L~~EN~eLK~RLqaLEqq 201 (331)
+-++.|+.++..|+.+...|..++..- . ..+..|..+-..+...|..+...
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~er 78 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFER 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999999999999988642 1 23444555555555555554433
No 133
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=63.88 E-value=9.4 Score=25.62 Aligned_cols=16 Identities=50% Similarity=0.580 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHhc
Q 020103 209 NEALKKEVERLKVATG 224 (331)
Q Consensus 209 ne~Lk~EVqrLk~atg 224 (331)
|..|..||.|||...+
T Consensus 16 n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 16 NWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhh
Confidence 4445567777776654
No 134
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=63.79 E-value=9.9 Score=25.65 Aligned_cols=27 Identities=7% Similarity=0.166 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQ 178 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lq 178 (331)
.+..||.||+.|-.++..|..++.-|+
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 356788898888888888777776554
No 135
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=63.52 E-value=7.5 Score=30.51 Aligned_cols=23 Identities=35% Similarity=0.351 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020103 150 ARYISELERKVQTLQTEATTLSA 172 (331)
Q Consensus 150 kqyleeLE~kVq~Lq~ENs~L~~ 172 (331)
|..|.+|+.++.+|+.||+-|+.
T Consensus 21 Ke~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 21 KEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777776654
No 136
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=63.45 E-value=34 Score=34.53 Aligned_cols=94 Identities=12% Similarity=0.080 Sum_probs=52.6
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHH
Q 020103 128 DPKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTE---NTELKLRLQAMEQQAQL 204 (331)
Q Consensus 128 D~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~E---N~eLK~RLqaLEqq~qL 204 (331)
++..++..+++|-... --...+.+|..+...++.+...|.++...+.++...+... -.+|+.++..+..+..-
T Consensus 14 n~~~v~~~~~~R~~~~----~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~ 89 (485)
T 3qne_A 14 DPEIIKASQKKRGDSV----ELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKE 89 (485)
T ss_dssp CHHHHHHHHHHHTCCS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHH
Confidence 4555565555553210 0145567788888888888888888888877777665442 23566666655554433
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q 020103 205 RDALNEALKKEVERLKVATGE 225 (331)
Q Consensus 205 rdalne~Lk~EVqrLk~atge 225 (331)
.+.....+.+++..+-..++-
T Consensus 90 le~~~~~~~~~~~~~l~~iPN 110 (485)
T 3qne_A 90 IIEKEAEADKNLRSKINQVGN 110 (485)
T ss_dssp HHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHhCCC
Confidence 333333344444444333333
No 137
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=63.24 E-value=45 Score=31.82 Aligned_cols=66 Identities=14% Similarity=0.143 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEA--LKKEVERLKV 221 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~--Lk~EVqrLk~ 221 (331)
.+...|++++..++.--..+++|-....+....|+ ..|...... +++++.+-.+++ |..+++.++.
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 464 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALM---ASLDAEKAQ--GQKKVEELEGEITTLNHKLQDASA 464 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHH---HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666666555444333333 233333222 334555444443 3344544443
No 138
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=62.38 E-value=43 Score=27.20 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020103 154 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTEL 191 (331)
Q Consensus 154 eeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eL 191 (331)
...+.++..|..+...-...-..++.....+..|-..|
T Consensus 22 ~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL 59 (97)
T 2eqb_B 22 SDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555444444444444445555555555555
No 139
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=62.07 E-value=59 Score=26.71 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Q 020103 170 LSAQLTLFQRDTTDLSTENTELKL 193 (331)
Q Consensus 170 L~~qlt~Lqr~~~~L~~EN~eLK~ 193 (331)
|..+.-.|.+.+..+..||+.|+.
T Consensus 35 LIqEYl~LE~~~s~le~e~~rlr~ 58 (104)
T 3s9g_A 35 LIKEYLELEKSLSRMEDENNRLRL 58 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555566665544
No 140
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=61.95 E-value=7.1 Score=27.91 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 150 ARYISELERKVQTLQTEATTLSAQL 174 (331)
Q Consensus 150 kqyleeLE~kVq~Lq~ENs~L~~ql 174 (331)
..|++.||.++..|+.....|...+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588999999999988887776654
No 141
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=61.78 E-value=15 Score=26.56 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 020103 181 TTDLSTENTELKLRLQAM 198 (331)
Q Consensus 181 ~~~L~~EN~eLK~RLqaL 198 (331)
+..|..||.+||.++..|
T Consensus 21 ~eaLk~E~~eLk~k~~~L 38 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAI 38 (53)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444445555554444444
No 142
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=61.58 E-value=17 Score=28.51 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020103 165 TEATTLSAQLTLFQRDTTDLSTENTELKL 193 (331)
Q Consensus 165 ~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~ 193 (331)
.||..|..+|..++.....|..||..|+.
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~e 62 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRKENKDLAE 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888888888888889988855
No 143
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=61.28 E-value=4.7 Score=36.94 Aligned_cols=41 Identities=34% Similarity=0.307 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 020103 182 TDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEM 226 (331)
Q Consensus 182 ~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~atge~ 226 (331)
..|..||.+||.++..|+.+.. ..+.|++|.++||..++..
T Consensus 22 ~~l~~eN~~Lk~e~~~l~~~~~----~~~~l~~En~rLr~lL~~~ 62 (255)
T 2j5u_A 22 KNTYTENQHLKERLEELAQLES----EVADLKKENKDLKESLDIT 62 (255)
T ss_dssp ----CTTTTHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCc
Confidence 3455667777666666654432 3466778888999887653
No 144
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=60.91 E-value=12 Score=25.22 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=11.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Q 020103 174 LTLFQRDTTDLSTENTELKLRLQA 197 (331)
Q Consensus 174 lt~Lqr~~~~L~~EN~eLK~RLqa 197 (331)
+...+++...|..+|..|..++..
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHhhHHHHHHHHHHHHHHHHh
Confidence 333444444444555555444443
No 145
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=59.57 E-value=60 Score=25.20 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
....+||.+...|..+.+.|..+++.+...+..|.....+|-..|..|
T Consensus 35 ~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 35 RIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344678888888888888888888777888888877777776666655
No 146
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=59.17 E-value=79 Score=26.48 Aligned_cols=24 Identities=13% Similarity=0.375 Sum_probs=10.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 175 TLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 175 t~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
..|+..+..|...|..|+.++..+
T Consensus 53 ~eL~~~~~~Le~~n~~L~~~lke~ 76 (155)
T 2oto_A 53 EELEKAKQALEDQRKDLETKLKEL 76 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444333
No 147
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=59.05 E-value=21 Score=29.37 Aligned_cols=13 Identities=23% Similarity=0.240 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 020103 210 EALKKEVERLKVA 222 (331)
Q Consensus 210 e~Lk~EVqrLk~a 222 (331)
..|+.++.-|+..
T Consensus 68 ~~L~~~~~~lk~~ 80 (103)
T 4h22_A 68 SILQFQFAEVKEA 80 (103)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 148
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=58.14 E-value=53 Score=24.18 Aligned_cols=28 Identities=21% Similarity=0.423 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 149 KARYISELERKVQTLQTEATTLSAQLTL 176 (331)
Q Consensus 149 KkqyleeLE~kVq~Lq~ENs~L~~qlt~ 176 (331)
|...+.+||.++..++.-...+..++..
T Consensus 4 ~~~~~~~le~kl~~lEnIv~~l~~eve~ 31 (65)
T 3m0d_C 4 KEKLLAELEGKLRVFENIVAVLNKEVEA 31 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4566788888888887766655444443
No 149
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=57.98 E-value=15 Score=26.51 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=16.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020103 174 LTLFQRDTTDLSTENTELKLRLQAME 199 (331)
Q Consensus 174 lt~Lqr~~~~L~~EN~eLK~RLqaLE 199 (331)
+..|+.++..|..||..|+.++..|.
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556667777777777666654
No 150
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=57.96 E-value=14 Score=27.40 Aligned_cols=24 Identities=13% Similarity=0.256 Sum_probs=10.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 175 TLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 175 t~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
..|+.+...|..+|..|+.++..|
T Consensus 33 ~~Le~~v~~L~~eN~~L~~ev~~L 56 (63)
T 2dgc_A 33 KQLEDKVEELLSKNYHLENEVARL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555554444443
No 151
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=57.86 E-value=59 Score=25.68 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 020103 181 TTDLSTENTELKLRLQAMEQQA 202 (331)
Q Consensus 181 ~~~L~~EN~eLK~RLqaLEqq~ 202 (331)
..+|..|-+.|+.++..||.+.
T Consensus 21 ~E~L~qEi~~Lr~kv~elEnEr 42 (81)
T 3qh9_A 21 AEELLQELRHLKIKVEELENER 42 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555554444443
No 152
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=57.79 E-value=69 Score=25.36 Aligned_cols=44 Identities=11% Similarity=0.277 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020103 148 RKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTEL 191 (331)
Q Consensus 148 RKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eL 191 (331)
+-.+-|.+||..-..+..+...+..+...+..+-...-.+-+.+
T Consensus 22 ~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~ 65 (96)
T 3q8t_A 22 RLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEF 65 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33444444555444444444444444444444333333344444
No 153
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=57.14 E-value=5.8 Score=33.03 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLT 175 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt 175 (331)
-+++|..+++.|+.||..|+.++.
T Consensus 9 t~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 368899999999999999888875
No 154
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=56.66 E-value=15 Score=35.88 Aligned_cols=64 Identities=20% Similarity=0.376 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 020103 157 ERKVQTLQTEATTLSAQLTLFQR---DTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEMM 227 (331)
Q Consensus 157 E~kVq~Lq~ENs~L~~qlt~Lqr---~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~atge~~ 227 (331)
..+++.|+.+.+.++.++..+.+ +...|..+-.+|+.++..++.+. ..+.+++..+-..++.++
T Consensus 43 ~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ipN~~ 109 (425)
T 2dq3_A 43 IKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEEL-------RKVEEELKNTLLWIPNLP 109 (425)
T ss_dssp HHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhCCCCC
Confidence 34444555555555555543321 12344556666666666654442 234445555544444443
No 155
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=56.59 E-value=98 Score=26.78 Aligned_cols=42 Identities=14% Similarity=0.227 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLR 194 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~R 194 (331)
.+.+|.++..|+........+.....+.+..|..+...|..+
T Consensus 72 Ed~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~ 113 (155)
T 2efr_A 72 EDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDE 113 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444333
No 156
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=56.52 E-value=94 Score=27.99 Aligned_cols=44 Identities=18% Similarity=0.275 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 195 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RL 195 (331)
.|..|-.++..|..++.....++..|+++...+...-..++.++
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~ 64 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQT 64 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 34555555555555555555555555555555544444444433
No 157
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=56.50 E-value=41 Score=25.87 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 154 SELERKVQTLQTEATTLSAQLTLFQR 179 (331)
Q Consensus 154 eeLE~kVq~Lq~ENs~L~~qlt~Lqr 179 (331)
.+||.++..|+...+-+...|..|..
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~ 35 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSE 35 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666665555555554443
No 158
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=56.35 E-value=48 Score=23.88 Aligned_cols=10 Identities=60% Similarity=0.863 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q 020103 210 EALKKEVERL 219 (331)
Q Consensus 210 e~Lk~EVqrL 219 (331)
..|++||++|
T Consensus 40 ~~Lkeele~L 49 (51)
T 3m91_A 40 LALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3445555554
No 159
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=56.02 E-value=20 Score=24.17 Aligned_cols=16 Identities=44% Similarity=0.535 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHhc
Q 020103 209 NEALKKEVERLKVATG 224 (331)
Q Consensus 209 ne~Lk~EVqrLk~atg 224 (331)
|+.|..||.|||...+
T Consensus 17 n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 17 NXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred hhhHHHHHHHHHHHHh
Confidence 4444556777776554
No 160
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=55.59 E-value=39 Score=30.78 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 160 VQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 160 Vq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
+++|+++..+...+...|+.....+.+||..|+.+++.++..
T Consensus 32 ~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn 73 (206)
T 3oa7_A 32 LQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGN 73 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCC
Confidence 455666666666677777777888999999999999988754
No 161
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=54.98 E-value=86 Score=25.65 Aligned_cols=13 Identities=31% Similarity=0.355 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHh
Q 020103 211 ALKKEVERLKVAT 223 (331)
Q Consensus 211 ~Lk~EVqrLk~at 223 (331)
.|..+|+.|+..+
T Consensus 108 kle~e~~~Lk~~l 120 (129)
T 2fxo_A 108 KLEDECSELKRDI 120 (129)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555443
No 162
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=54.70 E-value=60 Score=24.71 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEAT 168 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs 168 (331)
||..|+.+++.|+.++.
T Consensus 51 YI~~Lq~~~~~L~~e~~ 67 (82)
T 1am9_A 51 YIRFLQHSNQKLKQENL 67 (82)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 163
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=53.70 E-value=50 Score=25.31 Aligned_cols=15 Identities=33% Similarity=0.481 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 020103 182 TDLSTENTELKLRLQ 196 (331)
Q Consensus 182 ~~L~~EN~eLK~RLq 196 (331)
..|..+|.+|+.+|+
T Consensus 64 ~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 64 DQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 344445555555543
No 164
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=53.66 E-value=95 Score=25.75 Aligned_cols=18 Identities=17% Similarity=0.276 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 020103 181 TTDLSTENTELKLRLQAM 198 (331)
Q Consensus 181 ~~~L~~EN~eLK~RLqaL 198 (331)
...+..|..+|+.+|..|
T Consensus 85 REkl~~eKe~L~~ql~~L 102 (110)
T 2v4h_A 85 REKLVEKKEYLQEQLEQL 102 (110)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHH
Confidence 334444444444444433
No 165
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=53.07 E-value=92 Score=25.38 Aligned_cols=30 Identities=30% Similarity=0.410 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDTT 182 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~ 182 (331)
|.+|-+.|+.|+.+...|..+...|+....
T Consensus 38 i~elrr~iq~L~~el~~l~~~~~~LE~~l~ 67 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQCANLQNAIA 67 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 444445555555555444444444444433
No 166
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=52.93 E-value=24 Score=30.07 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 020103 203 QLRDALNEALKKEVERLKVAT 223 (331)
Q Consensus 203 qLrdalne~Lk~EVqrLk~at 223 (331)
+|+.|-+..+.+-=+.||...
T Consensus 87 qLQ~AY~~LfqeYd~~lK~~~ 107 (130)
T 3cl3_D 87 QLQVAYHQLFQEYDNHIKSSV 107 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444455544
No 167
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=52.35 E-value=48 Score=26.28 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020103 164 QTEATTLSAQLTLFQRDTTDLSTENTELKL 193 (331)
Q Consensus 164 q~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~ 193 (331)
-.||..|..++..++.+...|..||.+|+.
T Consensus 37 L~EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 37 LKENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888888888888888888888888854
No 168
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=52.33 E-value=15 Score=26.66 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=8.8
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q 020103 180 DTTDLSTENTELKLRLQAME 199 (331)
Q Consensus 180 ~~~~L~~EN~eLK~RLqaLE 199 (331)
.+..|..||.+|+.++..++
T Consensus 35 ~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 35 DYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555554443
No 169
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=52.10 E-value=7.8 Score=27.99 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020103 149 KARYISELERKVQTLQTEATTLS 171 (331)
Q Consensus 149 KkqyleeLE~kVq~Lq~ENs~L~ 171 (331)
+..|+++||.+|..|+.....|.
T Consensus 47 ~~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 47 KRARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh
Confidence 34789999999998887665543
No 170
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=51.93 E-value=18 Score=31.01 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 193 LRLQAMEQQAQLRDALNEALKKEVERLKVA 222 (331)
Q Consensus 193 ~RLqaLEqq~qLrdalne~Lk~EVqrLk~a 222 (331)
.+...|+.+..=.+.+.+.|...+..||..
T Consensus 103 ~r~~~L~~ql~e~e~ll~~lq~QL~~LK~v 132 (135)
T 2e7s_A 103 ILNKRLTEQLREKDMLLDTLTLQLKNLKKV 132 (135)
T ss_dssp HHHHHHHHTTTHHHHCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344555555555666543
No 171
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=51.62 E-value=87 Score=24.71 Aligned_cols=16 Identities=13% Similarity=0.052 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHHHHHH
Q 020103 138 NRQSAARSKERKARYI 153 (331)
Q Consensus 138 NRESArRSReRKkqyl 153 (331)
|=+||-.+-.|-|+-|
T Consensus 14 eLQSALeaEIqAKQ~i 29 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSL 29 (81)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566666655555543
No 172
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=51.14 E-value=88 Score=25.58 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020103 156 LERKVQTLQTEATTLSAQLT 175 (331)
Q Consensus 156 LE~kVq~Lq~ENs~L~~qlt 175 (331)
.|.+|..|+.++..|..++.
T Consensus 16 ~e~e~~~l~~~~~el~~~l~ 35 (125)
T 1joc_A 16 GEGEIEKLQTKVLELQRKLD 35 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHH
Confidence 34445555555444444443
No 173
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=50.92 E-value=90 Score=24.67 Aligned_cols=44 Identities=14% Similarity=0.279 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 155 ELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 155 eLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
.|+.++..|..+-..|..++..|.++...+..+-..+...+..+
T Consensus 8 ~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 8 QLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERL 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444433
No 174
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=50.85 E-value=26 Score=23.59 Aligned_cols=17 Identities=18% Similarity=0.087 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHhcc
Q 020103 209 NEALKKEVERLKVATGE 225 (331)
Q Consensus 209 ne~Lk~EVqrLk~atge 225 (331)
|..|..||.|||...++
T Consensus 17 ~~~Le~EV~RLk~ll~~ 33 (34)
T 3c3f_A 17 LYHXENEXARIXKLLXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHHHhc
Confidence 34455677777776553
No 175
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=50.43 E-value=44 Score=25.84 Aligned_cols=27 Identities=19% Similarity=0.454 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 195 LQAMEQQAQLRDALNEALKKEVERLKV 221 (331)
Q Consensus 195 LqaLEqq~qLrdalne~Lk~EVqrLk~ 221 (331)
|..++....-++.++..|+.|+..++.
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444444444555555555555543
No 176
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=50.30 E-value=36 Score=27.01 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020103 165 TEATTLSAQLTLFQRDTTDLSTENTELKL 193 (331)
Q Consensus 165 ~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~ 193 (331)
.||..|..+|..++.+...|..+|.+|+.
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777766666666666666643
No 177
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=49.91 E-value=68 Score=24.75 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 149 KARYISELERKVQTLQTEATTLSAQLTL 176 (331)
Q Consensus 149 KkqyleeLE~kVq~Lq~ENs~L~~qlt~ 176 (331)
|...|.+||.++.....++..|..++..
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555777777777777776666666544
No 178
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=49.39 E-value=81 Score=31.73 Aligned_cols=20 Identities=5% Similarity=-0.179 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020103 158 RKVQTLQTEATTLSAQLTLF 177 (331)
Q Consensus 158 ~kVq~Lq~ENs~L~~qlt~L 177 (331)
.+++.|+.+.+.+++++..+
T Consensus 51 ~~~~~l~~~rN~~sk~i~~~ 70 (484)
T 3lss_A 51 FLTEASKKLINICSKAVGAK 70 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555443
No 179
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=49.14 E-value=1.6e+02 Score=27.09 Aligned_cols=84 Identities=19% Similarity=0.338 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 020103 139 RQSAARSKERKARYISELERKVQTLQTEAT-TLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA-QLRDALNEALKKEV 216 (331)
Q Consensus 139 RESArRSReRKkqyleeLE~kVq~Lq~ENs-~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~-qLrdalne~Lk~EV 216 (331)
...|...+.|=..++++|-.++.-+-.+.. .|...+..++.. |..-+..+.++++.+.+.. -..+.++.+|...+
T Consensus 164 ~~~a~~L~~~l~~~~eeLr~~L~p~ae~lr~~l~~~~e~l~~~---l~~~~~~~~qq~e~f~~~~~p~~e~~~~~l~~~~ 240 (273)
T 3s84_A 164 KKNAEELKARISASAEELRQRLAPLAEDVRGNLRGNTEGLQKS---LAELGGHLDQQVEEFRRRVEPYGENFNKALVQQM 240 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHH---HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Confidence 345666677777777777776655433321 222333344443 4444577888888887665 45667899999999
Q ss_pred HHHHHHhcc
Q 020103 217 ERLKVATGE 225 (331)
Q Consensus 217 qrLk~atge 225 (331)
+.|+..++.
T Consensus 241 e~l~~~l~~ 249 (273)
T 3s84_A 241 EQLRQKLGP 249 (273)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHhCc
Confidence 999998864
No 180
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=48.88 E-value=1e+02 Score=25.33 Aligned_cols=51 Identities=25% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Q 020103 167 ATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA-----QLRDALNEALKKEVERL 219 (331)
Q Consensus 167 Ns~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~-----qLrdalne~Lk~EVqrL 219 (331)
+..|.+++...+.+...|..+..+||..++.||.+. +|| ..|.|-.+...+
T Consensus 6 ~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLR--dIEiLcQe~~~~ 61 (106)
T 4e61_A 6 LVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLR--DIEILVHTTQDL 61 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHh
No 181
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=48.88 E-value=1.3e+02 Score=25.97 Aligned_cols=15 Identities=47% Similarity=0.501 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHH
Q 020103 207 ALNEALKKEVERLKV 221 (331)
Q Consensus 207 alne~Lk~EVqrLk~ 221 (331)
+.+..|..||.||+.
T Consensus 140 ~~~~~~~~~~~~~~~ 154 (155)
T 2efr_A 140 SKNYHLENEVARLKK 154 (155)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHhhc
Confidence 456667788888863
No 182
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=48.82 E-value=78 Score=23.34 Aligned_cols=11 Identities=36% Similarity=0.552 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 020103 187 ENTELKLRLQA 197 (331)
Q Consensus 187 EN~eLK~RLqa 197 (331)
|..+|+.+++.
T Consensus 57 Ei~elrr~iq~ 67 (77)
T 3trt_A 57 ESTEYRRQVQS 67 (77)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344333333
No 183
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=48.78 E-value=67 Score=22.57 Aligned_cols=17 Identities=24% Similarity=0.219 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEA 167 (331)
Q Consensus 151 qyleeLE~kVq~Lq~EN 167 (331)
.++.+++.++..+..+.
T Consensus 12 ~~~~~~~~~~~~~~~~~ 28 (60)
T 3htk_A 12 NQVEELTEKCSLKTDEF 28 (60)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334433443333333
No 184
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=48.65 E-value=82 Score=28.77 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020103 165 TEATTLSAQLTLFQRDTTDLSTENTELKL 193 (331)
Q Consensus 165 ~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~ 193 (331)
.||..|..+|..++.+...|..||.+|+.
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELAE 143 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888888888754
No 185
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=48.29 E-value=90 Score=27.06 Aligned_cols=42 Identities=21% Similarity=0.460 Sum_probs=13.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 179 RDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLK 220 (331)
Q Consensus 179 r~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk 220 (331)
.++..+..+...|...++.++.+.+|.++...-|+.++...|
T Consensus 87 a~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDLeASR 128 (146)
T 2xnx_M 87 LELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLDASR 128 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTTTC---------------
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 333444444445555555555555555555555554444433
No 186
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=48.01 E-value=57 Score=31.89 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020103 160 VQTLQTEATTLSAQLTLFQRDTTDLSTENTEL 191 (331)
Q Consensus 160 Vq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eL 191 (331)
++.|+.++..+.+++..+.+++.....+.+.|
T Consensus 19 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l 50 (412)
T 3u06_A 19 TEELLRCNEQQAAELETCKEQLFQSNMERKEL 50 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 187
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=47.66 E-value=32 Score=23.05 Aligned_cols=17 Identities=18% Similarity=0.224 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHhcc
Q 020103 209 NEALKKEVERLKVATGE 225 (331)
Q Consensus 209 ne~Lk~EVqrLk~atge 225 (331)
|..|..||.|||...++
T Consensus 16 ~~~Le~EV~RLk~lL~~ 32 (33)
T 3c3g_A 16 XYHXENXLARIKXLLXE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHHHcc
Confidence 34455677777766553
No 188
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=47.50 E-value=89 Score=24.23 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020103 168 TTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVAT 223 (331)
Q Consensus 168 s~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~at 223 (331)
..|+.++..+..+...|..|-..++.-+..+.....---.+...+..++..||..+
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~Lrkdv 58 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDV 58 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34555555555555555555555544444332221111112234445555555433
No 189
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=47.29 E-value=69 Score=24.89 Aligned_cols=10 Identities=10% Similarity=0.129 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 020103 149 KARYISELER 158 (331)
Q Consensus 149 KkqyleeLE~ 158 (331)
+...+.+++.
T Consensus 32 l~~~~~e~~~ 41 (117)
T 2zqm_A 32 VQLELTEAKK 41 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333344333
No 190
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=46.81 E-value=99 Score=23.93 Aligned_cols=50 Identities=6% Similarity=0.147 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 149 KARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 149 KkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
.-..+..++.++..|.............|...+..|..|.+.|..++...
T Consensus 12 ~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~ea 61 (89)
T 3bas_A 12 QEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQL 61 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34455556666666666666666666666666666777777665554333
No 191
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=46.67 E-value=9.7 Score=34.83 Aligned_cols=7 Identities=43% Similarity=0.686 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 020103 185 STENTEL 191 (331)
Q Consensus 185 ~~EN~eL 191 (331)
..||..|
T Consensus 49 ~~En~rL 55 (255)
T 2j5u_A 49 KKENKDL 55 (255)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344433
No 192
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=46.31 E-value=1.2e+02 Score=37.34 Aligned_cols=45 Identities=18% Similarity=0.330 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQ 196 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLq 196 (331)
.+.+++.+++.++.+...|.++...+.++...|..|-...+.+|+
T Consensus 2029 ~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~ 2073 (3245)
T 3vkg_A 2029 KQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVD 2073 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444433
No 193
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=46.27 E-value=94 Score=23.51 Aligned_cols=54 Identities=15% Similarity=0.170 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 145 SKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 145 SReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
-...-...++.++.++...+..+..+...+..|++.+..|..+-..+..+|...
T Consensus 14 e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 14 DKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556667777777777777777777777777666666666665555443
No 194
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=46.21 E-value=58 Score=31.75 Aligned_cols=33 Identities=9% Similarity=0.240 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDTTD 183 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~ 183 (331)
..+.+|..+...++.+...|.++...+.++...
T Consensus 30 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~ 62 (425)
T 2dq3_A 30 DKVLELDKRRREIIKRLEALRSERNKLSKEIGK 62 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666655555443
No 195
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=45.95 E-value=35 Score=26.76 Aligned_cols=36 Identities=17% Similarity=0.115 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 163 LQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 163 Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
|..-...|-+++..|..+...|..|+..+.+-...+
T Consensus 28 Lnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~ 63 (77)
T 2w83_C 28 LNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKL 63 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444443333333
No 196
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=45.51 E-value=58 Score=30.33 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA 202 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~ 202 (331)
++-|+.+......|+..+-.+|+.| ..--+.+..||..+|+..
T Consensus 165 LelL~IRK~ma~sEI~EID~KI~~L-------~~mR~~vl~RLA~lEqdE 207 (242)
T 3uux_B 165 LEFLNIQKNSTLSEIRDIEVEVENL-------RQKKEKLLGKIANIEQNQ 207 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhH
Confidence 3444444444444444444444433 233334445555555554
No 197
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=44.67 E-value=19 Score=26.09 Aligned_cols=29 Identities=10% Similarity=0.353 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQR 179 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr 179 (331)
.+++++...+..|..||..|..++..+++
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47778888888888888888877776654
No 198
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=44.40 E-value=93 Score=22.93 Aligned_cols=39 Identities=15% Similarity=0.232 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTEL 191 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eL 191 (331)
+++|...+..-..+......++..|++.+..|..|-..|
T Consensus 37 ~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 37 FADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666666555555556666666666666666655444
No 199
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=43.91 E-value=33 Score=23.14 Aligned_cols=17 Identities=47% Similarity=0.536 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHhcc
Q 020103 209 NEALKKEVERLKVATGE 225 (331)
Q Consensus 209 ne~Lk~EVqrLk~atge 225 (331)
|..|..||.||+...|+
T Consensus 17 ~~~Le~eV~RL~~ll~~ 33 (34)
T 2hy6_A 17 NYHLANAVARLAKAVGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 34445677777776653
No 200
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=43.37 E-value=2.1e+02 Score=28.74 Aligned_cols=14 Identities=29% Similarity=0.598 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHh
Q 020103 210 EALKKEVERLKVAT 223 (331)
Q Consensus 210 e~Lk~EVqrLk~at 223 (331)
+.|+..|+.|+..+
T Consensus 178 ~~l~~ki~~l~~~~ 191 (464)
T 1m1j_B 178 DSLHKKIQKLENAI 191 (464)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555554433
No 201
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=43.17 E-value=1.8e+02 Score=26.00 Aligned_cols=39 Identities=23% Similarity=0.179 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTEL 191 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eL 191 (331)
+.+|+.++..|+.+|..|...+..+..++..+..+..++
T Consensus 134 ~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~ 172 (213)
T 1ik9_A 134 IAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEAL 172 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666777777766666666666666555555555544
No 202
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=43.07 E-value=33 Score=23.15 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhcc
Q 020103 209 NEALKKEVERLKVATGE 225 (331)
Q Consensus 209 ne~Lk~EVqrLk~atge 225 (331)
+..|..||.|||...|+
T Consensus 17 ~~~L~~EV~RLk~lL~~ 33 (34)
T 2bni_A 17 GHHICNELARIKKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHhcc
Confidence 44455677777776553
No 203
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=42.25 E-value=1.4e+02 Score=24.21 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020103 143 ARSKERKARYISELERKVQTLQ 164 (331)
Q Consensus 143 rRSReRKkqyleeLE~kVq~Lq 164 (331)
+.+..=..+...+|+.+|..++
T Consensus 21 ~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 21 RQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444555555555543
No 204
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=42.24 E-value=22 Score=26.91 Aligned_cols=15 Identities=40% Similarity=0.565 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTE 166 (331)
Q Consensus 152 yleeLE~kVq~Lq~E 166 (331)
||..|+.+++.|+.+
T Consensus 58 YI~~L~~~~~~L~~e 72 (80)
T 1hlo_A 58 YIQYMRRKNHTHQQD 72 (80)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 205
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=42.02 E-value=46 Score=22.30 Aligned_cols=17 Identities=24% Similarity=0.147 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHhcc
Q 020103 209 NEALKKEVERLKVATGE 225 (331)
Q Consensus 209 ne~Lk~EVqrLk~atge 225 (331)
+..|..||.||+...|+
T Consensus 16 ~~~le~EV~Rl~~ll~~ 32 (33)
T 2wq1_A 16 IYHNTNEIARNTKLVGE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 44556678888776664
No 206
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=41.90 E-value=1.7e+02 Score=25.39 Aligned_cols=68 Identities=13% Similarity=0.109 Sum_probs=27.5
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020103 129 PKRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAME 199 (331)
Q Consensus 129 ~KR~KRiLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLE 199 (331)
-+-.+..++.|+..+.-=.+.+..+..|..+-..-.........++...+..+..+ |..|+..|..+.
T Consensus 143 ~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~kd~~kl~kae~el~~ak~~ye~l---n~~L~~eLp~l~ 210 (251)
T 2fic_A 143 FPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEM---NVDLQEELPSLW 210 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 34444444444444433333333333332221111112223444444455544433 666666666553
No 207
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=41.87 E-value=60 Score=32.17 Aligned_cols=29 Identities=14% Similarity=0.361 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQR 179 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr 179 (331)
+|.++||.++..|+..+..-...|..|+.
T Consensus 113 e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~ 141 (390)
T 1deq_A 113 QINEDLRSRIEILRRKVIEQVQRINLLQK 141 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34445555555444443333223333333
No 208
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=41.61 E-value=80 Score=26.22 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=16.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH
Q 020103 175 TLFQRDTTDLSTENTELKLRLQ 196 (331)
Q Consensus 175 t~Lqr~~~~L~~EN~eLK~RLq 196 (331)
..|..+...|..||+.||.+|.
T Consensus 11 EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 11 EEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566678899999999987
No 209
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=40.93 E-value=36 Score=22.39 Aligned_cols=25 Identities=16% Similarity=0.385 Sum_probs=14.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH
Q 020103 176 LFQRDTTDLSTENTELKLRLQAMEQ 200 (331)
Q Consensus 176 ~Lqr~~~~L~~EN~eLK~RLqaLEq 200 (331)
.|+++....++||-.|.+.+..||.
T Consensus 5 qlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444455566777777666655543
No 210
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=40.46 E-value=56 Score=21.79 Aligned_cols=28 Identities=29% Similarity=0.266 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 192 KLRLQAMEQQAQLRDALNEALKKEVERL 219 (331)
Q Consensus 192 K~RLqaLEqq~qLrdalne~Lk~EVqrL 219 (331)
|..+.++..|-.+--....+|++.|..|
T Consensus 7 kekvsalkeqflmlmfkvsalkekvsal 34 (36)
T 3tq2_A 7 KEKVSALKEQFLMLMFKVSALKEKVSAL 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333334445555555444
No 211
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=40.24 E-value=52 Score=26.46 Aligned_cols=34 Identities=18% Similarity=0.348 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhc
Q 020103 187 ENTELKLRLQAMEQQA-QLRDALNEALKKEVERLKVATG 224 (331)
Q Consensus 187 EN~eLK~RLqaLEqq~-qLrdalne~Lk~EVqrLk~atg 224 (331)
|-..++..+-.||++. +++ +.-.+||.+||.-+-
T Consensus 51 Emq~Ir~tvyeLE~~h~kmK----q~YEeEI~rLr~eLe 85 (92)
T 3vp9_A 51 EMQQIRNTVYERELTHRKMK----DAYEEEIKHLKLGLE 85 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3344444455555543 333 445578888887654
No 212
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=39.23 E-value=1.3e+02 Score=23.11 Aligned_cols=31 Identities=13% Similarity=0.212 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 020103 155 ELERKVQTLQTEATTLSAQLTLFQRDTTDLS 185 (331)
Q Consensus 155 eLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~ 185 (331)
+|...|..|..|...|..++..+++++..+.
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888899998889888888887776655
No 213
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=39.19 E-value=1.4e+02 Score=23.53 Aligned_cols=11 Identities=27% Similarity=0.296 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 020103 151 RYISELERKVQ 161 (331)
Q Consensus 151 qyleeLE~kVq 161 (331)
..-..|+.+|+
T Consensus 14 eLQSALeaEIq 24 (81)
T 1wt6_A 14 ELQEALEEEVL 24 (81)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344555444
No 214
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=39.00 E-value=31 Score=22.42 Aligned_cols=17 Identities=29% Similarity=0.591 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020103 182 TDLSTENTELKLRLQAM 198 (331)
Q Consensus 182 ~~L~~EN~eLK~RLqaL 198 (331)
..|++||..||..++.+
T Consensus 9 asleaenkqlkakveel 25 (31)
T 1p9i_A 9 ASLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566666666655544
No 215
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=38.83 E-value=2.7e+02 Score=28.37 Aligned_cols=68 Identities=18% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020103 130 KRAKRILANRQSAARSKERKA-RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQA 197 (331)
Q Consensus 130 KR~KRiLaNRESArRSReRKk-qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqa 197 (331)
+-.+-+++.|+.-+.--+.+- +|.++||.++..|+..+..-...|..|+..+..+..+-+.|..-|..
T Consensus 89 ~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 89 VETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 216
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=38.75 E-value=99 Score=28.09 Aligned_cols=47 Identities=21% Similarity=0.297 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA 202 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~ 202 (331)
=+.=.|+++..|+.+|..|+.+++.|- ....+|..+-.++..+....
T Consensus 66 aVSL~erQ~~~LR~r~~~Le~~L~~Li----~~A~~Ne~l~~~~~~l~l~L 112 (252)
T 3e98_A 66 AVSLVERQVRLLRERNIEMRHRLSQLM----DVARENDRLFDKTRRLVLDL 112 (252)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 356667788888888888888887654 35678888888877776554
No 217
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=38.61 E-value=74 Score=23.92 Aligned_cols=14 Identities=29% Similarity=0.484 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 020103 183 DLSTENTELKLRLQ 196 (331)
Q Consensus 183 ~L~~EN~eLK~RLq 196 (331)
.|..+|..|+.+|+
T Consensus 65 ~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 65 DLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 218
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=38.43 E-value=1.1e+02 Score=24.65 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020103 155 ELERKVQTLQTEATTLSAQLTL 176 (331)
Q Consensus 155 eLE~kVq~Lq~ENs~L~~qlt~ 176 (331)
.|+..+..|+.....+..+++.
T Consensus 99 ~l~~~~~~l~~~l~~l~~~i~~ 120 (133)
T 1fxk_C 99 ELESTLQKMGENLRAITDIMMK 120 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 219
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=38.34 E-value=43 Score=31.51 Aligned_cols=21 Identities=19% Similarity=0.474 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020103 159 KVQTLQTEATTLSAQLTLFQR 179 (331)
Q Consensus 159 kVq~Lq~ENs~L~~qlt~Lqr 179 (331)
+++.|+.++..|..+++.|++
T Consensus 186 eie~L~~~~~~L~eEi~~Le~ 206 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQ 206 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433
No 220
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=38.26 E-value=27 Score=26.96 Aligned_cols=13 Identities=38% Similarity=0.511 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHH
Q 020103 208 LNEALKKEVERLK 220 (331)
Q Consensus 208 lne~Lk~EVqrLk 220 (331)
.++.||+||-||.
T Consensus 51 q~~lLK~EIRRlE 63 (71)
T 3bbp_D 51 QIKLLKSEIRRLE 63 (71)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3455666666654
No 221
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=38.22 E-value=50 Score=22.26 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHhc
Q 020103 209 NEALKKEVERLKVATG 224 (331)
Q Consensus 209 ne~Lk~EVqrLk~atg 224 (331)
|..|..||.|||...+
T Consensus 17 n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 17 LYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHc
Confidence 3444567777777654
No 222
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=38.12 E-value=1.3e+02 Score=22.88 Aligned_cols=12 Identities=33% Similarity=0.581 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 020103 151 RYISELERKVQT 162 (331)
Q Consensus 151 qyleeLE~kVq~ 162 (331)
.-|..||.++..
T Consensus 12 ~~i~~lE~eL~~ 23 (74)
T 2xv5_A 12 RLLAEKEREMAE 23 (74)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 223
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=37.88 E-value=2.5e+02 Score=26.08 Aligned_cols=52 Identities=17% Similarity=0.272 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 150 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 150 kqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
..-|.++..|++.|..-...+..+|+.++++=..|..+...++.|+..++..
T Consensus 176 ~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qEy 227 (242)
T 3uux_B 176 LSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEEY 227 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3568899999999999999999999999999888988888998888877543
No 224
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=37.73 E-value=98 Score=29.61 Aligned_cols=6 Identities=17% Similarity=-0.014 Sum_probs=2.2
Q ss_pred HHHHHH
Q 020103 157 ERKVQT 162 (331)
Q Consensus 157 E~kVq~ 162 (331)
|..|..
T Consensus 18 e~~i~~ 23 (323)
T 1lwu_C 18 EQIGVS 23 (323)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 333333
No 225
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.61 E-value=1.1e+02 Score=25.02 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020103 155 ELERKVQTLQTEATTLSAQLTL 176 (331)
Q Consensus 155 eLE~kVq~Lq~ENs~L~~qlt~ 176 (331)
+|..++..++.....|......
T Consensus 48 ~LR~kl~~~~~~t~~l~k~ts~ 69 (130)
T 2dnx_A 48 KLQENLQQLQHSTNQLAKETNE 69 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 226
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=36.99 E-value=1e+02 Score=23.82 Aligned_cols=14 Identities=36% Similarity=0.475 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHH
Q 020103 207 ALNEALKKEVERLK 220 (331)
Q Consensus 207 alne~Lk~EVqrLk 220 (331)
..|..|+.+++.|+
T Consensus 73 ~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 73 KRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 34556666666654
No 227
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=36.80 E-value=53 Score=29.32 Aligned_cols=42 Identities=21% Similarity=0.207 Sum_probs=23.8
Q ss_pred cCChHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 126 TVDPKRAKR-ILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLF 177 (331)
Q Consensus 126 ~~D~KR~KR-iLaNRESArRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~L 177 (331)
..||...-| ++. .-...+.+|..++.+|+.+|..|..+.+..
T Consensus 136 v~~p~e~i~elid----------~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~ 178 (184)
T 3w03_C 136 VENPAEVIRELIC----------YCLDTIAENQAKNEHLQKENERLLRDWNDV 178 (184)
T ss_dssp CSCHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777766 332 244555666666666666666665554443
No 228
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=36.63 E-value=1.5e+02 Score=25.66 Aligned_cols=27 Identities=15% Similarity=0.415 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQR 179 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr 179 (331)
+-+||.-++.--+-...|...+..|.+
T Consensus 100 LrELEADLKEKDsMVe~LT~TiG~LrK 126 (167)
T 4gkw_A 100 LGELEADLKEKDSMVESLTETIGILRK 126 (167)
T ss_dssp THHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHhhhhHHHHHHHHHHHHHHH
Confidence 345555555544555555555555544
No 229
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=35.81 E-value=50 Score=22.43 Aligned_cols=21 Identities=19% Similarity=0.137 Sum_probs=11.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHH
Q 020103 175 TLFQRDTTDLSTENTELKLRL 195 (331)
Q Consensus 175 t~Lqr~~~~L~~EN~eLK~RL 195 (331)
+..-.+...|+.+|..|..++
T Consensus 16 AsyidkVR~LE~~N~~Le~~i 36 (39)
T 1gk7_A 16 ANYIDKVRFLEQQNKILLAEL 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444555666666665544
No 230
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.79 E-value=54 Score=32.14 Aligned_cols=53 Identities=13% Similarity=0.240 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 162 TLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKV 221 (331)
Q Consensus 162 ~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~ 221 (331)
.+...+..|..++..|++++.-|..|+..|+.++..+..+ ...+++|+.+|+.
T Consensus 39 ~l~~~~~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e-------~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 39 ALSNVNSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRE-------LKRAQEEVKRIQS 91 (428)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTC
T ss_pred hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHcC
Confidence 3444445555555555555555666666665544433222 2345667766654
No 231
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=35.55 E-value=1.1e+02 Score=21.36 Aligned_cols=40 Identities=10% Similarity=0.188 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020103 154 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKL 193 (331)
Q Consensus 154 eeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~ 193 (331)
..|+..+..+......+...+..+...+..+..+-+..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~ 47 (60)
T 3htk_A 8 KTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRD 47 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555444444444444444444443333333333
No 232
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=35.08 E-value=1.3e+02 Score=21.77 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Q 020103 158 RKVQTLQTEATTLSAQLTLFQRDTTD 183 (331)
Q Consensus 158 ~kVq~Lq~ENs~L~~qlt~Lqr~~~~ 183 (331)
.++.+|..+..+|..++..|+.+...
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~a 29 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANA 29 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666665555444333
No 233
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=34.44 E-value=3.4e+02 Score=27.23 Aligned_cols=13 Identities=8% Similarity=0.302 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 020103 188 NTELKLRLQAMEQ 200 (331)
Q Consensus 188 N~eLK~RLqaLEq 200 (331)
-.+|+.+|..++.
T Consensus 113 ~~~l~~~i~~le~ 125 (484)
T 3lss_A 113 SKDLSDQVAGLAK 125 (484)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4445555544433
No 234
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=34.13 E-value=1.6e+02 Score=22.81 Aligned_cols=30 Identities=27% Similarity=0.263 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020103 169 TLSAQLTLFQRDTTDLSTENTELKLRLQAM 198 (331)
Q Consensus 169 ~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaL 198 (331)
.|..++..|+.+...|.-.+.++.-.|..|
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql 53 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQV 53 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344444444444444444444444444333
No 235
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=33.66 E-value=70 Score=20.99 Aligned_cols=16 Identities=31% Similarity=0.407 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 020103 183 DLSTENTELKLRLQAM 198 (331)
Q Consensus 183 ~L~~EN~eLK~RLqaL 198 (331)
.|.+.|-.-|+.++++
T Consensus 12 alkarnyaakqkvqal 27 (33)
T 1fmh_B 12 ALKARNYAAKQKVQAL 27 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHH
Confidence 3444444444444444
No 236
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=33.41 E-value=59 Score=23.51 Aligned_cols=31 Identities=23% Similarity=0.466 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 020103 154 SELERKVQTLQTEATTLSAQLTLFQRDTTDL 184 (331)
Q Consensus 154 eeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L 184 (331)
..||.-|..|+..|..|...+..|+++...|
T Consensus 20 aklenivarlendnanlekdianlekdianl 50 (56)
T 3he4_A 20 AKLENIVARLENDNANLEKDIANLEKDIANL 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 3456666666666666666666555554443
No 237
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=33.37 E-value=73 Score=32.37 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTEL 191 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eL 191 (331)
..+||.++.+++.+.......+...++....|..+.+..
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~ 375 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQL 375 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 467888888888887776666665555444444443333
No 238
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=33.37 E-value=62 Score=21.77 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020103 160 VQTLQTEATTLSAQLTLFQRD 180 (331)
Q Consensus 160 Vq~Lq~ENs~L~~qlt~Lqr~ 180 (331)
....+.++..|++|+..|+.+
T Consensus 9 n~a~qqDIddlkrQN~~Le~Q 29 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQ 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHhhHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 239
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.31 E-value=70 Score=31.34 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020103 154 SELERKVQTLQTEATTLSAQL 174 (331)
Q Consensus 154 eeLE~kVq~Lq~ENs~L~~ql 174 (331)
.+|..+++.|+.+..-|..+.
T Consensus 45 ~dl~~~lk~le~~~~~L~~e~ 65 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELLTLQE 65 (428)
T ss_dssp ---CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 240
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=32.99 E-value=1.3e+02 Score=21.38 Aligned_cols=11 Identities=36% Similarity=0.646 Sum_probs=6.2
Q ss_pred HHHHHHHHHHH
Q 020103 211 ALKKEVERLKV 221 (331)
Q Consensus 211 ~Lk~EVqrLk~ 221 (331)
.|+.||.||..
T Consensus 35 nlrdeiarlen 45 (52)
T 3he5_B 35 NLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44556666654
No 241
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=32.89 E-value=94 Score=24.03 Aligned_cols=11 Identities=18% Similarity=0.238 Sum_probs=5.4
Q ss_pred HHHHHHHHHHH
Q 020103 192 KLRLQAMEQQA 202 (331)
Q Consensus 192 K~RLqaLEqq~ 202 (331)
-.||+.+|+..
T Consensus 41 ldRlA~lEqdE 51 (72)
T 2xu6_A 41 LGKIANIEQNQ 51 (72)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhH
Confidence 34555555543
No 242
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=32.28 E-value=2.1e+02 Score=27.16 Aligned_cols=73 Identities=16% Similarity=0.150 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020103 149 KARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATG 224 (331)
Q Consensus 149 KkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~atg 224 (331)
-+.+|..|...+...+.....+...|..++.. |......|+.....+.....-..+..+.|++||+.++....
T Consensus 121 l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~---l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 121 LKEGITDLRGEIQQNQKYAQQLIEELTKLRDS---IGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSVN 193 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666555555443 33333334444443333322223345677888888776665
No 243
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=32.01 E-value=3.9e+02 Score=26.48 Aligned_cols=16 Identities=19% Similarity=0.156 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHh
Q 020103 208 LNEALKKEVERLKVAT 223 (331)
Q Consensus 208 lne~Lk~EVqrLk~at 223 (331)
..+.+..+|+||.+++
T Consensus 142 ~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 142 NVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445567888888887
No 244
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=31.91 E-value=70 Score=24.32 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 148 RKARYISELERKVQTLQTEATTLSAQLTLF 177 (331)
Q Consensus 148 RKkqyleeLE~kVq~Lq~ENs~L~~qlt~L 177 (331)
.|...|.+||..+..-..++..|+.++..+
T Consensus 22 ~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 22 LKEERIKELEKRLSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888888777777777777665543
No 245
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=31.89 E-value=1.8e+02 Score=24.10 Aligned_cols=62 Identities=18% Similarity=0.302 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020103 151 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVAT 223 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~at 223 (331)
....+|+.-+..++.....|..-|..+++.-. |-.|..-|.. -|......++.+|..+|..+
T Consensus 67 ~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~---------kF~l~~~Ei~--~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 67 WTTNELRNGLRSIEWDLEDLEETIGIVEANPG---------KFKLPAGDLQ--ERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH---------HHCCCHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH---------hcCCCHHHHH--HHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555554433222 1122222222 24456677778888887654
No 246
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=31.48 E-value=1.3e+02 Score=21.61 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020103 156 LERKVQTLQTEATTLSAQLT 175 (331)
Q Consensus 156 LE~kVq~Lq~ENs~L~~qlt 175 (331)
+..++..|+.+...++..++
T Consensus 5 ~q~~i~~le~el~~~r~e~~ 24 (59)
T 1gk6_A 5 LEDKVEELLSKNYHLENEVA 24 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 247
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=31.02 E-value=1.7e+02 Score=23.14 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 155 ELERKVQTLQTEATTLSAQLTLFQ 178 (331)
Q Consensus 155 eLE~kVq~Lq~ENs~L~~qlt~Lq 178 (331)
.|+.+++.|+.+...|..++..+.
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~ 28 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDAL 28 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555554443
No 248
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=30.99 E-value=1.3e+02 Score=24.72 Aligned_cols=16 Identities=6% Similarity=0.163 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 020103 183 DLSTENTELKLRLQAM 198 (331)
Q Consensus 183 ~L~~EN~eLK~RLqaL 198 (331)
.|..|+++|+.+++.+
T Consensus 36 ~l~~e~k~l~ke~~~l 51 (171)
T 2zvf_A 36 RFFEEWKDQRKEIERL 51 (171)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444333
No 249
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=30.99 E-value=1.4e+02 Score=25.98 Aligned_cols=20 Identities=15% Similarity=0.170 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020103 146 KERKARYISELERKVQTLQT 165 (331)
Q Consensus 146 ReRKkqyleeLE~kVq~Lq~ 165 (331)
=++|++|+.+|..+...++.
T Consensus 21 I~~K~~~LqeL~~Q~vafkn 40 (155)
T 2aze_A 21 IKQKQSQLQELILQQIAFKN 40 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35788888888877666554
No 250
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=30.96 E-value=2e+02 Score=22.77 Aligned_cols=7 Identities=29% Similarity=0.458 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 020103 139 RQSAARS 145 (331)
Q Consensus 139 RESArRS 145 (331)
|++|..-
T Consensus 25 rEaA~Ee 31 (84)
T 1gmj_A 25 REQAEEE 31 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHhHH
Confidence 3444433
No 251
>3vhx_B Kinesin-like protein KIF23; small GTPase, GTP binding, flemming BODY, cytokinesis, cell signaling protein complex; HET: GTP; 2.81A {Homo sapiens}
Probab=30.61 E-value=22 Score=29.97 Aligned_cols=18 Identities=44% Similarity=0.652 Sum_probs=13.6
Q ss_pred CCCCCCCCCCCCcccccc
Q 020103 9 PNPNPPTRGPYHRRSQSE 26 (331)
Q Consensus 9 ~~~~~~~r~~~hrra~se 26 (331)
|.+++|+-+..|||++|-
T Consensus 7 p~~~~~p~~~~hRRS~Sa 24 (120)
T 3vhx_B 7 PDQNAPPIRLRHRRSRSA 24 (120)
T ss_dssp -CCCCCCSSCCSCCCCSS
T ss_pred CCCCCCCcCcceecccCC
Confidence 455667778899999986
No 252
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=30.52 E-value=2.6e+02 Score=25.77 Aligned_cols=63 Identities=14% Similarity=0.323 Sum_probs=34.8
Q ss_pred HHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 134 RILANRQSA-ARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 134 RiLaNRESA-rRSReRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
.-|+|||.. +.+|.||..-..++.. |.... --+.++..|+++...++++|-....+|..+..+
T Consensus 97 K~IR~~E~svqp~R~~R~~l~~~I~k----Lk~k~-P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~ 160 (234)
T 3plt_A 97 KSIRNIEASVQPSRDRKEKITDEIAH----LKYKD-PQSTKIPVLEQELVRAEAESLVAEAQLSNITRE 160 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHC-TTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH----HhccC-CCCchHHHHHHHHHHHHHHhhHHHHHHHHhHHH
Confidence 346777765 5566666655554432 22111 113456666676666777776666666655443
No 253
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=30.35 E-value=2e+02 Score=26.01 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=13.5
Q ss_pred CCcccccccc----CcchHHHhhhcCCCcccccccc
Q 020103 276 TPHQPMLATA----NSHAFSEMLQQDPLGRLQGLDI 307 (331)
Q Consensus 276 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~qgl~i 307 (331)
..|+.+++.. .++.+-+.+|. ||-|
T Consensus 171 ~~HeAv~~v~~~~~~~gtVv~V~qk-------GY~l 199 (213)
T 4ani_A 171 YLHQAVMQAEAEGYEPNTVVEELQK-------GYKL 199 (213)
T ss_dssp TTEEEEEEECCSSSCSSSEEEEEEC-------CCEE
T ss_pred HHceeeeeecCCCCCCCcEEEEEeC-------CeEE
Confidence 3556555432 23455566666 7777
No 254
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=30.17 E-value=2.3e+02 Score=25.87 Aligned_cols=45 Identities=20% Similarity=0.206 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHH
Q 020103 161 QTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA-QLR 205 (331)
Q Consensus 161 q~Lq~ENs~L~~qlt~Lqr~~~~L~~EN~eLK~RLqaLEqq~-qLr 205 (331)
+.|....+.+++++..|++....+..|++.+..+|...++++ .+|
T Consensus 167 ~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~ 212 (228)
T 3q0x_A 167 QFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLR 212 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555556666666666667777777777776666653 444
No 255
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=29.58 E-value=34 Score=21.74 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 020103 184 LSTENTELKLRLQAME 199 (331)
Q Consensus 184 L~~EN~eLK~RLqaLE 199 (331)
|+-||..|.+.+.++.
T Consensus 5 lefendaleqkiaalk 20 (28)
T 3ra3_A 5 LEFENDALEQKIAALK 20 (28)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHH
Confidence 4444555544444443
No 256
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=29.17 E-value=2.4e+02 Score=23.14 Aligned_cols=11 Identities=18% Similarity=-0.070 Sum_probs=5.5
Q ss_pred ChHHHHHHHHh
Q 020103 128 DPKRAKRILAN 138 (331)
Q Consensus 128 D~KR~KRiLaN 138 (331)
..+.+|+++..
T Consensus 61 sL~eIk~~l~~ 71 (142)
T 3gp4_A 61 SIEALIDYLAL 71 (142)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 34455555543
No 257
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=28.84 E-value=2e+02 Score=22.09 Aligned_cols=8 Identities=13% Similarity=0.347 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 020103 213 KKEVERLK 220 (331)
Q Consensus 213 k~EVqrLk 220 (331)
..||...|
T Consensus 69 e~EIatYR 76 (86)
T 1x8y_A 69 DMEIHAYR 76 (86)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444433
No 258
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=28.80 E-value=2.1e+02 Score=22.65 Aligned_cols=18 Identities=17% Similarity=0.302 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020103 184 LSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 184 L~~EN~eLK~RLqaLEqq 201 (331)
...||..|..+|..++..
T Consensus 44 aL~EN~~Lh~~ie~l~eE 61 (83)
T 1uii_A 44 ALKENEKLHKEIEQKDNE 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345677776666665444
No 259
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=28.04 E-value=1.1e+02 Score=26.86 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 020103 183 DLSTENTELKLRL 195 (331)
Q Consensus 183 ~L~~EN~eLK~RL 195 (331)
.|..|..+|+.++
T Consensus 117 aL~~Ei~~Lr~qL 129 (175)
T 3lay_A 117 AVAKEMESLGQKL 129 (175)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 260
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=27.73 E-value=1.1e+02 Score=19.90 Aligned_cols=17 Identities=29% Similarity=0.509 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020103 155 ELERKVQTLQTEATTLS 171 (331)
Q Consensus 155 eLE~kVq~Lq~ENs~L~ 171 (331)
.||.++..|+.....|.
T Consensus 5 alekkcaalesklqale 21 (31)
T 3ljm_A 5 ALEKKCAALESKLQALE 21 (31)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444333333
No 261
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=27.71 E-value=2.4e+02 Score=22.71 Aligned_cols=37 Identities=11% Similarity=0.129 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020103 188 NTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATG 224 (331)
Q Consensus 188 N~eLK~RLqaLEqq~qLrdalne~Lk~EVqrLk~atg 224 (331)
...||++.+.++...++-......|.+.+..|+..+.
T Consensus 47 ey~iKkq~evl~Et~~mipd~~~Rl~~a~~~L~~~l~ 83 (108)
T 1h7c_A 47 NYDIKKQAEILQESRMMIPDCQRRLEAAYLDLQRILE 83 (108)
T ss_dssp CTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3467777777777776666666777777777776654
No 262
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=27.61 E-value=2.4e+02 Score=22.71 Aligned_cols=14 Identities=14% Similarity=0.076 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 020103 187 ENTELKLRLQAMEQ 200 (331)
Q Consensus 187 EN~eLK~RLqaLEq 200 (331)
....|+.++...+.
T Consensus 41 ~i~vLk~Qv~IY~~ 54 (94)
T 3jsv_C 41 TVPVLKAQADIYKA 54 (94)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
No 263
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=27.00 E-value=1.7e+02 Score=28.87 Aligned_cols=10 Identities=30% Similarity=0.650 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 020103 211 ALKKEVERLK 220 (331)
Q Consensus 211 ~Lk~EVqrLk 220 (331)
.|+..|..|.
T Consensus 123 ~l~~~i~~l~ 132 (409)
T 1m1j_C 123 QLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 264
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=26.63 E-value=2.4e+02 Score=22.32 Aligned_cols=9 Identities=33% Similarity=0.567 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 020103 212 LKKEVERLK 220 (331)
Q Consensus 212 Lk~EVqrLk 220 (331)
|.++|+.+|
T Consensus 70 lH~~V~~~K 78 (93)
T 3t98_B 70 IHENVKVLK 78 (93)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444443
No 265
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=26.61 E-value=2.2e+02 Score=21.86 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 020103 156 LERKVQTLQTEATTLSAQLTLFQRDTTDLST 186 (331)
Q Consensus 156 LE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L~~ 186 (331)
|...|..|..|...|..++..+++++..+..
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~e 32 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKD 32 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888887777666553
No 266
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=26.39 E-value=1.8e+02 Score=20.83 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020103 154 SELERKVQTLQTEATTLSAQLTL 176 (331)
Q Consensus 154 eeLE~kVq~Lq~ENs~L~~qlt~ 176 (331)
..||.++..++.-...+...+..
T Consensus 8 ~~le~k~~~~e~iv~~l~~~v~~ 30 (66)
T 3m0a_A 8 ESLEKKTATFENIVCVLNREVER 30 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHH
Confidence 34455555555544444444333
No 267
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=25.85 E-value=3.7e+02 Score=24.25 Aligned_cols=12 Identities=17% Similarity=0.113 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHh
Q 020103 212 LKKEVERLKVAT 223 (331)
Q Consensus 212 Lk~EVqrLk~at 223 (331)
++.++..++...
T Consensus 141 ~~~~l~~a~~~l 152 (369)
T 4dk0_A 141 AEIEVNTAETNL 152 (369)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 344444444443
No 268
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=25.58 E-value=1.6e+02 Score=22.87 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhccCCCCC
Q 020103 213 KKEVERLKVATGEMMTPT 230 (331)
Q Consensus 213 k~EVqrLk~atge~~~~~ 230 (331)
+.+|+.|.. .+.++.++
T Consensus 35 e~~vqaL~~-ag~ip~AP 51 (74)
T 1avy_A 35 QGDVQALQE-AGYIPEAP 51 (74)
T ss_dssp HHHHHHHHH-TCCCCCCC
T ss_pred hhhhHHHHh-cCCCCCCC
Confidence 445666665 66666543
No 269
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=25.04 E-value=79 Score=21.74 Aligned_cols=20 Identities=40% Similarity=0.456 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTL 170 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L 170 (331)
..|..|+.+++.|+.|...|
T Consensus 15 eQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 15 EQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 270
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=24.69 E-value=1.6e+02 Score=21.74 Aligned_cols=11 Identities=27% Similarity=0.552 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 020103 183 DLSTENTELKL 193 (331)
Q Consensus 183 ~L~~EN~eLK~ 193 (331)
.|..||..|+.
T Consensus 21 eL~qe~k~m~k 31 (56)
T 2w6b_A 21 ELRQDNKKMKK 31 (56)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 271
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=24.25 E-value=1.9e+02 Score=20.41 Aligned_cols=28 Identities=29% Similarity=0.275 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQLTLFQR 179 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~qlt~Lqr 179 (331)
.++.||.-+..|++.-+.|.++.+..+.
T Consensus 6 kv~~Le~~ld~LqTr~ArLlae~~ssq~ 33 (46)
T 3swy_A 6 KVEQLGSSLDTLQTRFARLLAEYNATQM 33 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666665555554443
No 272
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=24.12 E-value=3.9e+02 Score=23.95 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=23.7
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 129 PKRAKRILANRQSAARSKERKARYISELERKVQ 161 (331)
Q Consensus 129 ~KR~KRiLaNRESArRSReRKkqyleeLE~kVq 161 (331)
..++-+....|+.|-++-.++.+.++.|-.++.
T Consensus 102 W~~Le~ae~eRe~aL~~el~RlerLe~La~kf~ 134 (235)
T 2odv_A 102 WGKLHVAILEREKQLRSEFERLEALQRIVTKLQ 134 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666778899999998887766666655444
No 273
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=23.74 E-value=3.6e+02 Score=23.35 Aligned_cols=31 Identities=26% Similarity=0.344 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLTLFQRDTTD 183 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~ 183 (331)
++.|..+-..-+.|..+|++++..+++.+..
T Consensus 48 VDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K 78 (167)
T 4gkw_A 48 VDQLQKRNVAHQKEIGKLRAELGTAQRNLEK 78 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444444444455666676666666665443
No 274
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=23.69 E-value=2.7e+02 Score=21.96 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020103 152 YISELERKVQTLQTEATTLSAQ 173 (331)
Q Consensus 152 yleeLE~kVq~Lq~ENs~L~~q 173 (331)
.+..|+.++..|+.+...+.++
T Consensus 9 ~i~~L~~q~~~L~~ei~~~~a~ 30 (85)
T 3viq_B 9 RVHLLEQQKEQLESSLQDALAK 30 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555543
No 275
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=23.32 E-value=1.1e+02 Score=19.24 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020103 156 LERKVQTLQTEATTLSAQ 173 (331)
Q Consensus 156 LE~kVq~Lq~ENs~L~~q 173 (331)
|..+|-.|..|...|..+
T Consensus 5 lkdevgelkgevralkde 22 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDE 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHH
Confidence 344444444444444333
No 276
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=23.12 E-value=1e+02 Score=20.21 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020103 155 ELERKVQTLQTEATTLSA 172 (331)
Q Consensus 155 eLE~kVq~Lq~ENs~L~~ 172 (331)
.||..+..|++-...|..
T Consensus 3 rlee~~r~l~~ivq~lq~ 20 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQE 20 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 345555544444443333
No 277
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=22.84 E-value=1.8e+02 Score=19.71 Aligned_cols=13 Identities=46% Similarity=0.601 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHhc
Q 020103 212 LKKEVERLKVATG 224 (331)
Q Consensus 212 Lk~EVqrLk~atg 224 (331)
|..||.|||...+
T Consensus 20 Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 20 LKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 3445555555443
No 278
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=22.34 E-value=1.4e+02 Score=24.73 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020103 155 ELERKVQTLQTEATTLSAQLT 175 (331)
Q Consensus 155 eLE~kVq~Lq~ENs~L~~qlt 175 (331)
.|+..++.|+.....+..+++
T Consensus 109 ~l~~~l~~l~~~l~~l~~~i~ 129 (151)
T 2zdi_C 109 EYDEAIKKTQGALAELEKRIG 129 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 279
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=22.17 E-value=1.4e+02 Score=25.39 Aligned_cols=15 Identities=13% Similarity=0.127 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 020103 154 SELERKVQTLQTEAT 168 (331)
Q Consensus 154 eeLE~kVq~Lq~ENs 168 (331)
..||.++..++....
T Consensus 3 ~~l~~~~~~~~~~~~ 17 (192)
T 2gkw_A 3 GLLESQLSRHDQMLS 17 (192)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555544443
No 280
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=22.11 E-value=2.1e+02 Score=25.87 Aligned_cols=27 Identities=26% Similarity=0.398 Sum_probs=11.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020103 175 TLFQRDTTDLSTENTELKLRLQAMEQQ 201 (331)
Q Consensus 175 t~Lqr~~~~L~~EN~eLK~RLqaLEqq 201 (331)
.+.+++...|..+|.+|+.+|..|-..
T Consensus 68 SL~erQ~~~LR~r~~~Le~~L~~Li~~ 94 (252)
T 3e98_A 68 SLVERQVRLLRERNIEMRHRLSQLMDV 94 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444333
No 281
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=22.06 E-value=3.5e+02 Score=24.95 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHH
Q 020103 191 LKLRLQAMEQQA-QLRDALNEALK 213 (331)
Q Consensus 191 LK~RLqaLEqq~-qLrdalne~Lk 213 (331)
.+.+|..+++.+ .+++++.+.|.
T Consensus 172 ~~k~L~~~~~kv~~vr~~leelLd 195 (261)
T 3rkg_A 172 KSKDLTLFYQKTLLIRDLLDELLE 195 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHc
Confidence 345677777765 46777777776
No 282
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=22.03 E-value=2.8e+02 Score=26.30 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 151 RYISELERKVQTLQTEATTLSAQL 174 (331)
Q Consensus 151 qyleeLE~kVq~Lq~ENs~L~~ql 174 (331)
+|+++|+.+++.|+.+..++..++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~ 270 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKALKDI 270 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355555555555555554444433
No 283
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=21.86 E-value=1.2e+02 Score=20.68 Aligned_cols=9 Identities=44% Similarity=0.593 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 020103 214 KEVERLKVA 222 (331)
Q Consensus 214 ~EVqrLk~a 222 (331)
.||.|||..
T Consensus 22 ~EV~RL~~l 30 (36)
T 1kd8_A 22 NEVARLEKE 30 (36)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444443
No 284
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=21.74 E-value=3.2e+02 Score=22.13 Aligned_cols=9 Identities=33% Similarity=0.818 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 020103 211 ALKKEVERL 219 (331)
Q Consensus 211 ~Lk~EVqrL 219 (331)
.|++.++.+
T Consensus 115 ~Lk~~led~ 123 (129)
T 2fxo_A 115 ELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444433
No 285
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=21.64 E-value=1.9e+02 Score=21.41 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=12.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Q 020103 180 DTTDLSTENTELKLRLQAMEQQAQ 203 (331)
Q Consensus 180 ~~~~L~~EN~eLK~RLqaLEqq~q 203 (331)
+...|..-|-.|..+++-|+.++-
T Consensus 12 q~~kLKq~n~~L~~kv~~Le~~c~ 35 (58)
T 3a2a_A 12 QLLRLKQMNVQLAAKIQHLEFSCS 35 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555556666655543
No 286
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=21.63 E-value=36 Score=24.79 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020103 149 KARYISELERKVQTLQTEATTL 170 (331)
Q Consensus 149 KkqyleeLE~kVq~Lq~ENs~L 170 (331)
+..|++.|+.+|..|+.....|
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 5578999999999888755544
No 287
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=21.57 E-value=1.9e+02 Score=22.69 Aligned_cols=31 Identities=13% Similarity=0.227 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 150 ARYISELERKVQTLQTEATTLSAQLTLFQRD 180 (331)
Q Consensus 150 kqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~ 180 (331)
.+.+.+.|.+.+.|+..|..|...+.+|+.+
T Consensus 48 ~~r~~e~e~r~k~le~~n~~l~~riqELE~q 78 (83)
T 4ath_A 48 QQRAKDLENRQKKLEHANRHLLLRVQELEMQ 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 4567788889999999999999988877654
No 288
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=21.28 E-value=3.1e+02 Score=21.67 Aligned_cols=11 Identities=27% Similarity=0.477 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 020103 187 ENTELKLRLQA 197 (331)
Q Consensus 187 EN~eLK~RLqa 197 (331)
||..|..++..
T Consensus 39 EN~~Lh~~ie~ 49 (83)
T 1wlq_A 39 ENEKLHKEIEQ 49 (83)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 289
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.24 E-value=2e+02 Score=20.16 Aligned_cols=30 Identities=20% Similarity=0.390 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 020103 155 ELERKVQTLQTEATTLSAQLTLFQRDTTDL 184 (331)
Q Consensus 155 eLE~kVq~Lq~ENs~L~~qlt~Lqr~~~~L 184 (331)
+|=.++...-.|+..-..+++.++.+...|
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555556665556665555544443
No 290
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=21.11 E-value=3.5e+02 Score=22.28 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020103 153 ISELERKVQTLQTEATTLSAQLT 175 (331)
Q Consensus 153 leeLE~kVq~Lq~ENs~L~~qlt 175 (331)
|++|+.++...+.+...-..++.
T Consensus 37 ieeLQ~Ei~~~E~QL~iArQKLk 59 (107)
T 2k48_A 37 LQELQENITAHEQQLVTARQKLK 59 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555554444444333333
No 291
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=21.03 E-value=2e+02 Score=25.56 Aligned_cols=34 Identities=18% Similarity=0.098 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020103 147 ERKARYISELERKVQTLQTEATTLSAQLTLFQRD 180 (331)
Q Consensus 147 eRKkqyleeLE~kVq~Lq~ENs~L~~qlt~Lqr~ 180 (331)
+=-.+++.-|=.+++.|+.+|..|..++..|+++
T Consensus 141 e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E 174 (184)
T 3w03_C 141 EVIRELICYCLDTIAENQAKNEHLQKENERLLRD 174 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344577777777777666666655555444443
No 292
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=20.92 E-value=6.4e+02 Score=25.25 Aligned_cols=9 Identities=0% Similarity=0.176 Sum_probs=4.0
Q ss_pred HHHHhHHHH
Q 020103 134 RILANRQSA 142 (331)
Q Consensus 134 RiLaNRESA 142 (331)
.-|+|..+.
T Consensus 110 ~~lsn~Ts~ 118 (464)
T 1m1j_B 110 AKFSDTSTT 118 (464)
T ss_dssp HHHHHHHHH
T ss_pred HHHhhhhhH
Confidence 334554443
No 293
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=20.90 E-value=36 Score=31.16 Aligned_cols=17 Identities=24% Similarity=0.501 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020103 184 LSTENTELKLRLQAMEQ 200 (331)
Q Consensus 184 L~~EN~eLK~RLqaLEq 200 (331)
+..||++++.+|+.|+.
T Consensus 160 l~~En~~le~~Ie~Lk~ 176 (250)
T 2ve7_C 160 LNAAHQEALMKLERLEK 176 (250)
T ss_dssp HHHHHHHHHHSCC----
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445555555554433
No 294
>2p0t_A UPF0307 protein pspto_4464; APC85033, conserved putative protein, pseudomonas syringae P STR. DC3000, structural genomics, PSI-2; 2.19A {Pseudomonas syringae PV} SCOP: a.290.1.1
Probab=20.79 E-value=4e+02 Score=23.34 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020103 139 RQSAARSKERKARYISELERK 159 (331)
Q Consensus 139 RESArRSReRKkqyleeLE~k 159 (331)
|......|.|-.+||..|-+.
T Consensus 61 ri~~~earRRQlqyIGKLmR~ 81 (176)
T 2p0t_A 61 KHTANIARKRHILFIGKLMRD 81 (176)
T ss_dssp GCCSHHHHHHHHHHHHHHGGG
T ss_pred hccccHHHHHHHHHHHHHHhc
Confidence 444344788999999888765
No 295
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.65 E-value=1.1e+02 Score=30.08 Aligned_cols=10 Identities=30% Similarity=0.458 Sum_probs=5.5
Q ss_pred HHHHHHHHHH
Q 020103 212 LKKEVERLKV 221 (331)
Q Consensus 212 Lk~EVqrLk~ 221 (331)
+++|+++|+.
T Consensus 58 ~~~e~~~l~~ 67 (405)
T 4b4t_J 58 IKDELRLLQE 67 (405)
T ss_dssp HHHHHHHCCC
T ss_pred HHHHHHHhcC
Confidence 4556665554
No 296
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=20.16 E-value=2.1e+02 Score=24.90 Aligned_cols=12 Identities=8% Similarity=-0.039 Sum_probs=6.7
Q ss_pred ChHHHHHHHHhH
Q 020103 128 DPKRAKRILANR 139 (331)
Q Consensus 128 D~KR~KRiLaNR 139 (331)
..+.+|+++.++
T Consensus 65 ~l~~i~~~~~~~ 76 (278)
T 1r8e_A 65 PLEEMKKAQDLE 76 (278)
T ss_dssp CHHHHHHHTTSC
T ss_pred CHHHHHHHHHhC
Confidence 345566666554
Done!