Citrus Sinensis ID: 020104

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-
Protein Sequence
MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSSKKLLDAGFRYNYGIDEMFDEAIQCCKEKGYL
Secondary Structure (PSIPRED)
cccccccEEEEccccHHHHHHHHHHHHcccEEEEEEccccccccccHHHHHHHHcccccccccEEEEccccccccHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccEEEEccccccccccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccEEEEccccccccccccccccHHHHHHHHHcccccccccccccccEEHHHHHHHHHHHHccccccccEEEEcccccHHHHHHHHHHHccccccccccccccccccccccccHHHHHHccccccccHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEcccHHHHHHHHHHHHHHcccEEEEEEEcccccccccHHHHHHHHHcccccHHEEEEEccccccccHHHHHcccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccEEEEEcccccccccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEccEEEcccccccccHHHHHHHHHHccccHHHHHHHcccEEEHHHHHHHHHHHHcccccccEEEEccccccHHHHHHHHHHHcccccccccccccccccccccEEcHHHHHHcccEEEccHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
meegkgrvcvtggtgFIASWLIMRLLDHgysvtttvrseldpehrnskdlsflknlpgaseRLRIFHadlshpdgfdaaIAGCTGvlhvatpvdfedkepeeVITQRAINGTLGILKSCLKSGTVKRVVYTSsnaavfyndkdvdmmdetfWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGldlvtlipsmvvgpficpkfagsVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEypdakgryicsSHTLTIQEMAEFLsakypeypiptvdslaeiegyrapgssskkllDAGFRYNYGIDEMFDEAIQCCKEKGYL
Flexible Loop (DISEMBL)
meegkgrvcvtgGTGFIASWLIMRLLDHGYSVTTTVrseldpehrnskdlsflkNLPGASERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITqraingtlgilkSCLKSGTVKRVVYtssnaavfyndkdvdmMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGyrapgssskklldAGFRYNYGIDEMFDEAIQCCKEKGYL
Low Complexity Region (SEG)
MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSSKKLLDAGFRYNYGIDEMFDEAIQCCKEKGYL
Disordered region (IsUnstruct)
******RVCVTGGTGFIASWLIMRLLDHGYSVTTTV****************L**L*GASERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYR*******KLLDAGFRYNYGIDEMFDEAIQCCK*****
Disordered Region (DISOPRED)
****KGR**VTGGTGFIASWLIMRLLDHGYSVTTTVRSELD*****SKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSSKKLLDAGFRYNYGIDEMFDEAIQCCKEKGYL
Disordered Region (DISEMBL)
MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSSKKLLDAGFRYNYGIDEMFDEAIQCCKEKGYL
Disordered Region (DISPRO)
****KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSSKKLLDAGFRYNYGIDEMFDEAIQCCKEK***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSSKKLLDAGFRYNYGIDEMFDEAIQCCKEKGYL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	331	2.2.26 [Sep-21-2011]
P51106	354	Dihydroflavonol-4-reducta	N/A	no	0.978	0.915	0.460	4e-82
P51102	382	Dihydroflavonol-4-reducta	no	no	0.981	0.850	0.465	6e-81
Q9XES5	348	Bifunctional dihydroflavo	N/A	no	0.957	0.910	0.458	8e-80
Q84KP0	347	Bifunctional dihydroflavo	N/A	no	0.957	0.913	0.452	5e-79
P51105	366	Dihydroflavonol-4-reducta	N/A	no	0.960	0.868	0.446	5e-78
P51110	337	Dihydroflavonol-4-reducta	no	no	0.942	0.925	0.454	5e-77
P14720	380	Dihydroflavonol-4-reducta	N/A	no	0.942	0.821	0.442	1e-75
P51103	364	Dihydroflavonol-4-reducta	N/A	no	0.969	0.881	0.465	1e-75
P51108	357	Dihydroflavonol-4-reducta	N/A	no	0.978	0.907	0.464	5e-75
P51104	360	Dihydroflavonol-4-reducta	N/A	no	0.954	0.877	0.437	6e-74

>sp|P51106|DFRA_HORVU Dihydroflavonol-4-reductase OS=Hordeum vulgare GN=ANT18 PE=3 SV=1

 Score =  305 bits (780), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 153/332 (46%), Positives = 213/332 (64%), Gaps = 8/332 (2%)

Query: 1   MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGAS 60
           M+  KG V VTG +GF+ SWL+M+LL  GY+V  TVR   DP   N +    L  LPGA 
Sbjct: 1   MDGNKGPVVVTGASGFVGSWLVMKLLQAGYTVRATVR---DPA--NVEKTKPLLELPGAK 55

Query: 61  ERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCL 120
           ERL I+ ADLS    F+ AIAGCTGV HVATP+DF+ ++PE  + +  + G L I+++C 
Sbjct: 56  ERLSIWKADLSEDGSFNEAIAGCTGVFHVATPMDFDSQDPENEVIKPTVEGMLSIMRACK 115

Query: 121 KSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAAL 180
           ++GTVKR+V+TSS  +V   ++     D+  WSD+DY R++   G  Y +SK L E+AA+
Sbjct: 116 EAGTVKRIVFTSSAGSVNIEERPRPAYDQDNWSDIDYCRRVKMTGWMYFVSKALAEKAAM 175

Query: 181 EFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVA 240
           E+A E+GLD +++IP++VVGPF+      S+ ++LALI GN   Y  L    +VH+DD+ 
Sbjct: 176 EYASENGLDFISIIPTLVVGPFLSAGMPPSLVTALALITGNEAHYSILKQVQLVHLDDLC 235

Query: 241 RAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAP-GSS 299
            A  FL E+P+A GRYICSSH  TI  +A  L  ++PEY IP     A ++    P   S
Sbjct: 236 DAMTFLFEHPEANGRYICSSHDATIHGLARMLQDRFPEYDIP--QKFAGVDDNLQPIHFS 293

Query: 300 SKKLLDAGFRYNYGIDEMFDEAIQCCKEKGYL 331
           SKKLLD GF + Y  ++MFD AI  C++KG +
Sbjct: 294 SKKLLDHGFSFRYTTEDMFDAAIHTCRDKGLI 325

Hordeum vulgare (taxid: 4513)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 1EC: 9

>sp|P51102|DFRA_ARATH Dihydroflavonol-4-reductase OS=Arabidopsis thaliana GN=DFRA PE=3 SV=2

 Score =  301 bits (770), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 154/331 (46%), Positives = 210/331 (63%), Gaps = 6/331 (1%)

Query: 1   MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGAS 60
           M   K  VCVTG +GFI SWL+MRLL+ GY V  TVR   DP   N K +  L +LP A 
Sbjct: 1   MVSQKETVCVTGASGFIGSWLVMRLLERGYFVRATVR---DP--GNLKKVQHLLDLPNAK 55

Query: 61  ERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCL 120
             L ++ ADLS    +D AI GC GV HVATP+DFE K+PE  + +  +NG LGI+K+C+
Sbjct: 56  TLLTLWKADLSEEGSYDDAINGCDGVFHVATPMDFESKDPENEVIKPTVNGMLGIMKACV 115

Query: 121 KSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAAL 180
           K+ TV+R V+TSS   V   +   ++ DE  WSD+++I      G  Y +SKTL E+AA 
Sbjct: 116 KAKTVRRFVFTSSAGTVNVEEHQKNVYDENDWSDLEFIMSKKMTGWMYFVSKTLAEKAAW 175

Query: 181 EFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVA 240
           +FAEE GLD +++IP++VVGPFI      S+ ++L+ I  N   Y  +     VH+DD+ 
Sbjct: 176 DFAEEKGLDFISIIPTLVVGPFITTSMPPSLITALSPITRNEAHYSIIRQGQYVHLDDLC 235

Query: 241 RAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSS 300
            AHIFL E   AKGRYICSSH  TI  +++FL  KYPEY +P+     + E  ++   SS
Sbjct: 236 NAHIFLYEQAAAKGRYICSSHDATILTISKFLRPKYPEYNVPSTFEGVD-ENLKSIEFSS 294

Query: 301 KKLLDAGFRYNYGIDEMFDEAIQCCKEKGYL 331
           KKL D GF + Y ++EMF E+I+ C++KG+L
Sbjct: 295 KKLTDMGFNFKYSLEEMFIESIETCRQKGFL 325

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 9

>sp|Q9XES5|DFRA_MALDO Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Malus domestica GN=DFR PE=1 SV=1

 Score =  297 bits (760), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 149/325 (45%), Positives = 209/325 (64%), Gaps = 8/325 (2%)

Query: 8   VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH 67
           VCVTG +GFI SWL+MRLL+HGY+V  TVR   DP   N K +  L +LP A   L ++ 
Sbjct: 8   VCVTGASGFIGSWLVMRLLEHGYTVRATVR---DP--TNQKKVKHLLDLPKAETHLTLWK 62

Query: 68  ADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKR 127
           ADL+    FD AI GC+GV HVATP+DFE K+PE  + +  ING L ILK+C K+ TV++
Sbjct: 63  ADLADEGSFDEAIQGCSGVFHVATPMDFESKDPENEVIKPTINGLLDILKACQKAKTVRK 122

Query: 128 VVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHG 187
           +V+TSS   V   +    + DE+ WSDV++ R +   G  Y +SKTL E+AA ++A+E+ 
Sbjct: 123 LVFTSSAGTVNVEEHQKPVYDESNWSDVEFCRSVKMTGWMYFVSKTLAEQAAWKYAKENN 182

Query: 188 LDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLL 247
           +D +T+IP++V+GPF+ P    S+ + L+ IL N   YG +     VH+DD+  +HI+L 
Sbjct: 183 IDFITIIPTLVIGPFLMPSMPPSLITGLSPILRNESHYGIIKQGQYVHLDDLCLSHIYLY 242

Query: 248 EYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGS-SSKKLLDA 306
           E+P A+GRYICSSH  TI E+ + L  KYPEY IPT      I+    P   SSKKL + 
Sbjct: 243 EHPKAEGRYICSSHDATIHELVKMLREKYPEYNIPT--KFKGIDDNLEPVHFSSKKLREI 300

Query: 307 GFRYNYGIDEMFDEAIQCCKEKGYL 331
           GF + Y +++MF  A+  C+ KG +
Sbjct: 301 GFEFKYSLEDMFVGAVDACRAKGLI 325

Bifunctional enzyme involved in the flavonoid metabolism. May use dihydroquercetin, dihydrokaempferol, eriodictyol, garbanzol (5-deoxydihydrokaempferol), dihydrofisetin (5-deoxydihydroquercetin), naringenin to a low extent (10%), but not 5-deoxynaringenin or butin (5-deoxyeriodictyol) as substrate.

Malus domestica (taxid: 3750)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 3

EC: 4

>sp|Q84KP0|DFRA_PYRCO Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Pyrus communis GN=DFR PE=1 SV=1

 Score =  295 bits (754), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 147/325 (45%), Positives = 209/325 (64%), Gaps = 8/325 (2%)

Query: 8   VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH 67
           VCVTG +GFI SWL+MRLL+HGY+V  TVR   DP   N K +  L +LP A   L ++ 
Sbjct: 8   VCVTGASGFIGSWLVMRLLEHGYTVRATVR---DP--TNQKKVKHLLDLPKAETHLTLWK 62

Query: 68  ADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKR 127
           ADL+    FD AI GC+GV HVATP+DFE ++PE  + +  ING L ILK+C K+ TV++
Sbjct: 63  ADLADEGSFDEAIQGCSGVFHVATPMDFESRDPENEVIKPTINGLLDILKACQKAKTVRK 122

Query: 128 VVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHG 187
           +V+TSS   V   +    + DE+ WSDV++ R +   G  Y +SKTL E+AA ++A+E+ 
Sbjct: 123 LVFTSSAGTVNVEEHQKPVYDESNWSDVEFCRSVKMTGWMYFVSKTLAEQAAWKYAKENN 182

Query: 188 LDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLL 247
           +D +T+IP++V+GPF+ P    S+ + L+ IL N   YG +     VH+DD+  +HI+L 
Sbjct: 183 IDFITIIPTLVIGPFLMPSMPPSLITGLSPILRNESHYGIIKQGQYVHLDDLCLSHIYLY 242

Query: 248 EYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGS-SSKKLLDA 306
           ++P A+GRYICSSH  TI E+ + L  KYPEY IPT      I+    P   SSKKL + 
Sbjct: 243 KHPKAEGRYICSSHDATIHELVKMLREKYPEYNIPT--KFKGIDDNLEPVHFSSKKLREI 300

Query: 307 GFRYNYGIDEMFDEAIQCCKEKGYL 331
           GF + Y +++MF  A+  C+ KG +
Sbjct: 301 GFEFKYSLEDMFVGAVDACRAKGLI 325

Bifunctional enzyme involved in the flavonoid metabolism. May use dihydroquercetin, eriodictyol, garbanzol (5-deoxydihydrokaempferol), dihydrofisetin (5-deoxydihydroquercetin), dihydrokaempferol to a low extent (5%), but not naringenin, 5-deoxynaringenin or butin (5-deoxyeriodictyol) as substrate.

Pyrus communis (taxid: 23211)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 3

EC: 4

>sp|P51105|DFRA_GERHY Dihydroflavonol-4-reductase OS=Gerbera hybrida GN=DFR PE=2 SV=1

 Score =  291 bits (744), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 150/336 (44%), Positives = 211/336 (62%), Gaps = 18/336 (5%)

Query: 2   EEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASE 61
           E+    VCVTG  GFI SWL+MRLL+ GY V  TVR   DP   + K +  L  LP A  
Sbjct: 3   EDSPATVCVTGAAGFIGSWLVMRLLERGYVVHATVR---DP--GDLKKVKHLLELPKAQT 57

Query: 62  RLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLK 121
            L+++ ADL+    FD AI GC GV H+ATP+DFE K+PE  I +  I G L I++SC+K
Sbjct: 58  NLKLWKADLTQEGSFDEAIQGCHGVFHLATPMDFESKDPENEIIKPTIEGVLSIIRSCVK 117

Query: 122 SGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYI--RKLDSWGKSYAISKTLTERAA 179
           + TVK++V+TSS   V   +K + + DE+ WSD+D+I  +K+ +W   Y +SKTL E+AA
Sbjct: 118 AKTVKKLVFTSSAGTVNGQEKQLHVYDESHWSDLDFIYSKKMTAW--MYFVSKTLAEKAA 175

Query: 180 LEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDV 239
            +  + + +  +++IP++VVGPFI   F  S+ ++L+LI GN   Y  +     VH+DD+
Sbjct: 176 WDATKGNNISFISIIPTLVVGPFITSTFPPSLVTALSLITGNEAHYSIIKQGQYVHLDDL 235

Query: 240 ARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPT----VDSLAEIEGYRA 295
              HI+L E P AKGRYICSSH  TI ++A+ +  K+PEY IPT    +D    I  +  
Sbjct: 236 CECHIYLYENPKAKGRYICSSHDATIHQLAKIIKDKWPEYYIPTKFPGIDEELPIVSF-- 293

Query: 296 PGSSSKKLLDAGFRYNYGIDEMFDEAIQCCKEKGYL 331
              SSKKL+D GF + Y +++MF  AI  C+EKG L
Sbjct: 294 ---SSKKLIDTGFEFKYNLEDMFKGAIDTCREKGLL 326

Gerbera hybrida (taxid: 18101)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 9

>sp|P51110|DFRA_VITVI Dihydroflavonol-4-reductase OS=Vitis vinifera GN=DFR PE=1 SV=1

 Score =  288 bits (736), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 150/330 (45%), Positives = 208/330 (63%), Gaps = 18/330 (5%)

Query: 8   VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH 67
           VCVTG +GFI SWL+MRLL+   +V  TVR   DP   N K +  L +LP A   L ++ 
Sbjct: 8   VCVTGASGFIGSWLVMRLLERRLTVRATVR---DP--TNVKKVKHLLDLPKAETHLTLWK 62

Query: 68  ADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKR 127
           ADL+    FD AI GCTGV HVATP+DFE K+PE  + +  I G LGI+KSC  + TV+R
Sbjct: 63  ADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRR 122

Query: 128 VVYTSSNAAVFYNDKDVDMMDETFWSDVDYIR--KLDSWGKSYAISKTLTERAALEFAEE 185
           +V+TSS   V   +  + + DE+ WSD+++ R  K+ +W   Y +SKTL E+AA ++A+E
Sbjct: 123 LVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAW--MYFVSKTLAEQAAWKYAKE 180

Query: 186 HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIF 245
           + +D +T+IP++VVGPFI      S+ ++L+ I GN   Y  +     VH+DD+  AHI+
Sbjct: 181 NNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIY 240

Query: 246 LLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPT----VDSLAEIEGYRAPGSSSK 301
           L E P A+GRYICSSH   I ++A+ L  KYPEY IPT    VD     E  ++   SSK
Sbjct: 241 LFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVD-----ENLKSVCFSSK 295

Query: 302 KLLDAGFRYNYGIDEMFDEAIQCCKEKGYL 331
           KL D GF + Y +++MF  A+  C+ KG L
Sbjct: 296 KLTDLGFEFKYSLEDMFTGAVDTCRAKGLL 325

Vitis vinifera (taxid: 29760)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 9

>sp|P14720|DFRA_PETHY Dihydroflavonol-4-reductase OS=Petunia hybrida GN=DFRA PE=2 SV=2

 Score =  283 bits (724), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 146/330 (44%), Positives = 206/330 (62%), Gaps = 18/330 (5%)

Query: 8   VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH 67
           VCVTG  GFI SWL+MRLL+ GY+V  TVR   DPE  N K +  L  LP A   L ++ 
Sbjct: 18  VCVTGAAGFIGSWLVMRLLERGYNVHATVR---DPE--NKKKVKHLLELPKADTNLTLWK 72

Query: 68  ADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKR 127
           ADL+    FD AI GC GV HVATP+DFE K+PE  + +  + G L I++SC K+ TVKR
Sbjct: 73  ADLTVEGSFDEAIQGCQGVFHVATPMDFESKDPENEVIKPTVRGMLSIIESCAKANTVKR 132

Query: 128 VVYTSSNAAVFYNDKDVDMMDETFWSDVDYI--RKLDSWGKSYAISKTLTERAALEFAEE 185
           +V+TSS   +   ++     D+T WSD+D+I  +K+  W   Y  SK L E+AA+E A++
Sbjct: 133 LVFTSSAGTLDVQEQQKLFYDQTSWSDLDFIYAKKMTGW--MYFASKILAEKAAMEEAKK 190

Query: 186 HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIF 245
             +D +++IP +VVGPFI P F  S+ ++L+LI GN   Y  +     VH+DD+  AHIF
Sbjct: 191 KNIDFISIIPPLVVGPFITPTFPPSLITALSLITGNEAHYCIIKQGQYVHLDDLCEAHIF 250

Query: 246 LLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPT----VDSLAEIEGYRAPGSSSK 301
           L E+P A GR+ICSSH   I ++A+ +  K+PEY +PT    +D    +  +     SSK
Sbjct: 251 LYEHPKADGRFICSSHHAIIYDVAKMVREKWPEYYVPTEFKGIDKDLPVVSF-----SSK 305

Query: 302 KLLDAGFRYNYGIDEMFDEAIQCCKEKGYL 331
           KL D GF++ Y +++M+  AI  C++K  L
Sbjct: 306 KLTDMGFQFKYTLEDMYKGAIDTCRQKQLL 335

Petunia hybrida (taxid: 4102)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 9

>sp|P51103|DFRA_CALCH Dihydroflavonol-4-reductase OS=Callistephus chinensis GN=F PE=2 SV=1

 Score =  283 bits (724), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 155/333 (46%), Positives = 209/333 (62%), Gaps = 12/333 (3%)

Query: 2   EEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASE 61
           E+    VCVTG  GFI SWL+MRLL+ GY V  TVR+  D      K +  L  LP A  
Sbjct: 3   EDSPPTVCVTGAAGFIGSWLVMRLLERGYIVRATVRNPGD-----MKKVKHLLELPKAET 57

Query: 62  RLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLK 121
            L ++ ADL+    FD AI GC GV HVATP+DFE K+PE  I +  I G L I++SC K
Sbjct: 58  NLTLWKADLTQEGSFDEAIEGCHGVFHVATPMDFESKDPENEIIKPTIEGILSIIRSCAK 117

Query: 122 SGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYI--RKLDSWGKSYAISKTLTERAA 179
           + TVK++VYTSS   V   +  + + DE+ WSD+D+I  +K+ +W   Y +SKTL E+AA
Sbjct: 118 AKTVKKLVYTSSAGTVNVQETQLPVYDESHWSDLDFIYSKKMTAW--MYFVSKTLAEKAA 175

Query: 180 LEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDV 239
           +E A+E+ +D V++IP +VVGPFI P F  S+ ++L+LI G    Y  +     VH+DD+
Sbjct: 176 MEAAKENNIDFVSIIPPLVVGPFINPTFPPSLITALSLINGAESHYSIIKQGQYVHLDDL 235

Query: 240 ARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEI-EGYRAPGS 298
              HIFL E P+AKGRYICS    TI ++A  +  K+PEY +PT    A I E       
Sbjct: 236 CECHIFLYENPEAKGRYICSKQDATIHQLARMIKQKWPEYHVPT--QFAGIDEELPTVSF 293

Query: 299 SSKKLLDAGFRYNYGIDEMFDEAIQCCKEKGYL 331
           SSKKL+D GF++ Y +++MF  AI  CKEKG+L
Sbjct: 294 SSKKLIDMGFKFKYDLEDMFKGAIDSCKEKGFL 326

Callistephus chinensis (taxid: 13379)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 9

>sp|P51108|DFRA_MAIZE Dihydroflavonol-4-reductase OS=Zea mays GN=A1 PE=3 SV=1

 Score =  281 bits (719), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 157/338 (46%), Positives = 213/338 (63%), Gaps = 14/338 (4%)

Query: 1   MEEG-----KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKN 55
           ME G     KG V VTG +GF+ SWL+M+LL  GY+V  TVR   DP   N      L +
Sbjct: 1   MERGAGASEKGTVLVTGASGFVGSWLVMKLLQAGYTVRATVR---DPA--NVGKTKPLMD 55

Query: 56  LPGASERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGI 115
           LPGA+ERL I+ ADL+    F  AI GCTGV HVATP+DF  K+PE  + +  + G + I
Sbjct: 56  LPGATERLSIWKADLAEEGSFHDAIRGCTGVFHVATPMDFLSKDPENEVIKPTVEGMISI 115

Query: 116 LKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLT 175
           +++C ++GTV+R+V+TSS   V   ++   + DE  W+DVD+ R++   G  Y +SKTL 
Sbjct: 116 MRACKEAGTVRRIVFTSSAGTVNLEERQRPVYDEESWTDVDFCRRVKMTGWMYFVSKTLA 175

Query: 176 ERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVH 235
           E+AAL +A EHGLDLVT+IP++VVGPFI      S+ ++LALI GN   Y  L    ++H
Sbjct: 176 EKAALAYAAEHGLDLVTIIPTLVVGPFISASMPPSLITALALITGNAPHYSILKQVQLIH 235

Query: 236 VDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRA 295
           +DD+  A IFL E P A GRY+CSSH +TI  +A  L  +YPEY +P       I+    
Sbjct: 236 LDDLCDAEIFLFENPAAAGRYVCSSHDVTIHGLAAMLRDRYPEYDVP--QRFPGIQDDLQ 293

Query: 296 PGS-SSKKLLDAGFRYNYG-IDEMFDEAIQCCKEKGYL 331
           P   SSKKL D GF + Y  +++MFD AI+ C+EKG +
Sbjct: 294 PVRFSSKKLQDLGFTFRYKTLEDMFDAAIRTCQEKGLI 331

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 9

>sp|P51104|DFRA_DIACA Dihydroflavonol-4-reductase OS=Dianthus caryophyllus GN=A PE=2 SV=1

 Score =  277 bits (709), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 146/334 (43%), Positives = 207/334 (61%), Gaps = 18/334 (5%)

Query: 4   GKGR-VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASER 62
           G+G  VCVTG +GFI SWLIMRLL+ GY+V  TVR   DP+  N+K +  L +LP A   
Sbjct: 20  GQGETVCVTGASGFIGSWLIMRLLERGYTVRATVR---DPD--NTKKVQHLLDLPNAKTN 74

Query: 63  LRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKS 122
           L ++ ADL     FDAA+ GCTGV H+ATP+DFE K+PE  + +  ING L ILKSC+K+
Sbjct: 75  LTLWKADLHEEGSFDAAVDGCTGVFHIATPMDFESKDPENEMIKPTINGMLDILKSCVKA 134

Query: 123 GTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEF 182
             ++RVV+TSS   V        + DET WS +D+IR +   G  Y +SK L E+AA ++
Sbjct: 135 -KLRRVVFTSSGGTVNVEATQKPVYDETCWSALDFIRSVKMTGWMYFVSKILAEQAAWKY 193

Query: 183 AEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARA 242
           A E+ L+ +++IP +VVGPFI P    S+ ++L+ I      Y  +     VH+DD+  +
Sbjct: 194 AAENNLEFISIIPPLVVGPFIMPSMPPSLITALSPITRTESHYTIIKQGQFVHLDDLCMS 253

Query: 243 HIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPT-----VDSLAEIEGYRAPG 297
           HIFL E P A GRYI S+   TI ++A+ L  +YPEY +PT      + + +++      
Sbjct: 254 HIFLYENPKANGRYIASACAATIYDIAKMLREEYPEYNVPTKFKDYKEDMGQVQ------ 307

Query: 298 SSSKKLLDAGFRYNYGIDEMFDEAIQCCKEKGYL 331
            SSKKL D GF + YG+ +M+  A++ C+ KG L
Sbjct: 308 FSSKKLTDLGFEFKYGLKDMYTAAVESCRAKGLL 341

Dianthus caryophyllus (taxid: 3570)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	331
225453897	327	PREDICTED: dihydroflavonol-4-reductase [	0.987	1.0	0.703	1e-138
296089142	665	unnamed protein product [Vitis vinifera]	0.987	0.491	0.712	1e-137
225453889	335	PREDICTED: dihydroflavonol-4-reductase i	0.987	0.976	0.712	1e-137
147769574	327	hypothetical protein VITISV_025424 [Viti	0.987	1.0	0.700	1e-137
225453895	327	PREDICTED: dihydroflavonol-4-reductase [	0.987	1.0	0.694	1e-137
224063846	327	predicted protein [Populus trichocarpa]	0.987	1.0	0.691	1e-134
225453893	351	PREDICTED: dihydroflavonol-4-reductase-l	0.981	0.925	0.673	1e-129
255570805	326	cinnamoyl-CoA reductase, putative [Ricin	0.981	0.996	0.662	1e-127
224087435	328	predicted protein [Populus trichocarpa]	0.987	0.996	0.662	1e-126
255541306	343	cinnamoyl-CoA reductase, putative [Ricin	0.981	0.947	0.644	1e-124

>gi|225453897|ref|XP_002278913.1| PREDICTED: dihydroflavonol-4-reductase [Vitis vinifera] gi|296089144|emb|CBI38847.3| unnamed protein product [Vitis vinifera]

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 233/331 (70%), Positives = 278/331 (83%), Gaps = 4/331 (1%)

Query: 1   MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGAS 60
           ME  KGRVCVTGGTGFIASWL+M+LL HGYSV  T+RS   P+ +  KD+S+L NLPGAS
Sbjct: 1   MEGEKGRVCVTGGTGFIASWLVMKLLQHGYSVNATIRSH--PQSK--KDVSYLTNLPGAS 56

Query: 61  ERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCL 120
           E+LRI++ADLS P  F+AAI GC GV HVA P+DFED EPEE +T+R++ GTLGILK+CL
Sbjct: 57  EKLRIYNADLSDPSSFEAAIEGCIGVFHVAHPIDFEDTEPEETVTKRSVEGTLGILKACL 116

Query: 121 KSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAAL 180
            S TVKRVVYTSS +AV YNDK  D+ DE+ WSDVD+++ L+ WG SY ISKT+TERAAL
Sbjct: 117 NSKTVKRVVYTSSTSAVEYNDKGGDIKDESSWSDVDFLKALNYWGLSYMISKTMTERAAL 176

Query: 181 EFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVA 240
           +FA EHGLDLVT+IPS VVGPFICP+F GSV ++LAL+LG+++ Y FL++ SMVHVDDV 
Sbjct: 177 DFAHEHGLDLVTVIPSFVVGPFICPRFPGSVNAALALVLGDQQHYHFLMSVSMVHVDDVC 236

Query: 241 RAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSS 300
            AHIFLLEYPDAKGRYICSS  LT+ EM+EFLSAKYP+ PIPT+DSL E++GY  PG SS
Sbjct: 237 SAHIFLLEYPDAKGRYICSSDRLTLNEMSEFLSAKYPQLPIPTIDSLKEVQGYGTPGVSS 296

Query: 301 KKLLDAGFRYNYGIDEMFDEAIQCCKEKGYL 331
           KKLLD GF+Y YG+DEMFDEAIQCCKEKG+L
Sbjct: 297 KKLLDTGFKYKYGLDEMFDEAIQCCKEKGFL 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089142|emb|CBI38845.3| unnamed protein product [Vitis vinifera]

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 236/331 (71%), Positives = 271/331 (81%), Gaps = 4/331 (1%)

Query: 1   MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGAS 60
           ME  KG+VCVTGGTGFIASWLIM+LL HGYSV  T+RS   P+ +  KD+ +L NLPGAS
Sbjct: 1   MEGEKGKVCVTGGTGFIASWLIMKLLQHGYSVNATIRSH--PQIK--KDIRYLTNLPGAS 56

Query: 61  ERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCL 120
           ERL+IF ADLS P  FDAAI GC GV HVA PVDFE+ EP+E + +R++ GTLGILK CL
Sbjct: 57  ERLQIFKADLSEPQSFDAAIEGCIGVFHVAHPVDFEEGEPQETVIRRSVEGTLGILKGCL 116

Query: 121 KSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAAL 180
           KS TVKRVVYTSS AAV YN+KD D+MDE+ WSD+D I  +   G SY ISKT  ERAAL
Sbjct: 117 KSKTVKRVVYTSSTAAVVYNNKDEDIMDESSWSDIDVINSIKPLGSSYVISKTRIERAAL 176

Query: 181 EFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVA 240
           EFAE+HGLDLV+LIPS VVGPFICP F GSV   LA+ILGN+  Y +L NTSMVHVDDVA
Sbjct: 177 EFAEQHGLDLVSLIPSFVVGPFICPGFPGSVHLILAMILGNQHHYQYLKNTSMVHVDDVA 236

Query: 241 RAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSS 300
            AHIFLLEYPDAKGRYICSS  LT+ EM+E LSAKYP+ PIPT+DSL EI+G+R PG+SS
Sbjct: 237 SAHIFLLEYPDAKGRYICSSDILTLNEMSELLSAKYPQLPIPTIDSLKEIQGFRIPGASS 296

Query: 301 KKLLDAGFRYNYGIDEMFDEAIQCCKEKGYL 331
           KKLLDAGF+Y YG+DEMF+EAIQCCKEKG+L
Sbjct: 297 KKLLDAGFKYKYGVDEMFEEAIQCCKEKGFL 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453889|ref|XP_002278819.1| PREDICTED: dihydroflavonol-4-reductase isoform 1 [Vitis vinifera]

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 236/331 (71%), Positives = 271/331 (81%), Gaps = 4/331 (1%)

Query: 1   MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGAS 60
           ME  KG+VCVTGGTGFIASWLIM+LL HGYSV  T+RS   P+ +  KD+ +L NLPGAS
Sbjct: 1   MEGEKGKVCVTGGTGFIASWLIMKLLQHGYSVNATIRSH--PQIK--KDIRYLTNLPGAS 56

Query: 61  ERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCL 120
           ERL+IF ADLS P  FDAAI GC GV HVA PVDFE+ EP+E + +R++ GTLGILK CL
Sbjct: 57  ERLQIFKADLSEPQSFDAAIEGCIGVFHVAHPVDFEEGEPQETVIRRSVEGTLGILKGCL 116

Query: 121 KSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAAL 180
           KS TVKRVVYTSS AAV YN+KD D+MDE+ WSD+D I  +   G SY ISKT  ERAAL
Sbjct: 117 KSKTVKRVVYTSSTAAVVYNNKDEDIMDESSWSDIDVINSIKPLGSSYVISKTRIERAAL 176

Query: 181 EFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVA 240
           EFAE+HGLDLV+LIPS VVGPFICP F GSV   LA+ILGN+  Y +L NTSMVHVDDVA
Sbjct: 177 EFAEQHGLDLVSLIPSFVVGPFICPGFPGSVHLILAMILGNQHHYQYLKNTSMVHVDDVA 236

Query: 241 RAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSS 300
            AHIFLLEYPDAKGRYICSS  LT+ EM+E LSAKYP+ PIPT+DSL EI+G+R PG+SS
Sbjct: 237 SAHIFLLEYPDAKGRYICSSDILTLNEMSELLSAKYPQLPIPTIDSLKEIQGFRIPGASS 296

Query: 301 KKLLDAGFRYNYGIDEMFDEAIQCCKEKGYL 331
           KKLLDAGF+Y YG+DEMF+EAIQCCKEKG+L
Sbjct: 297 KKLLDAGFKYKYGVDEMFEEAIQCCKEKGFL 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147769574|emb|CAN76937.1| hypothetical protein VITISV_025424 [Vitis vinifera]

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 232/331 (70%), Positives = 276/331 (83%), Gaps = 4/331 (1%)

Query: 1   MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGAS 60
           ME  KGRVCVTGGTGFIASWL+M+LL HGYSV  T+RS   P+ +  KD+S+L NLPGAS
Sbjct: 1   MEGEKGRVCVTGGTGFIASWLVMKLLQHGYSVNATIRSH--PQSK--KDVSYLTNLPGAS 56

Query: 61  ERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCL 120
           E+LRI++ADLS P  F+AAI GC GV HVA PVDFED EPEE +T+R++ GTLGILK+CL
Sbjct: 57  EKLRIYNADLSDPSSFEAAIEGCNGVFHVAHPVDFEDTEPEETVTKRSVEGTLGILKACL 116

Query: 121 KSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAAL 180
            S TVKRVVYTSS++AV YNDK  ++ DE+ WSDVD+++ L+ WG SY ISKT TERAAL
Sbjct: 117 NSKTVKRVVYTSSSSAVEYNDKGGNIKDESSWSDVDFLKALNYWGXSYMISKTXTERAAL 176

Query: 181 EFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVA 240
           +FA EHGLDLVT+IPS VVGPFICP+F GSV ++LAL+LG++++Y  L+N SMVHVDD  
Sbjct: 177 DFAHEHGLDLVTVIPSFVVGPFICPRFPGSVNTALALVLGDQQQYHILMNISMVHVDDAC 236

Query: 241 RAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSS 300
            AHIFLLEYPDAKGRYICSS  LT+ EM+EFLSAKYP+ PIPT+DSL E+ GY  PG SS
Sbjct: 237 SAHIFLLEYPDAKGRYICSSDRLTLNEMSEFLSAKYPQLPIPTIDSLKEVRGYGIPGVSS 296

Query: 301 KKLLDAGFRYNYGIDEMFDEAIQCCKEKGYL 331
           KKLLD GF+Y YG+DEMFDEAIQCCKEKG+L
Sbjct: 297 KKLLDTGFKYKYGLDEMFDEAIQCCKEKGFL 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453895|ref|XP_002278887.1| PREDICTED: dihydroflavonol-4-reductase [Vitis vinifera] gi|296089143|emb|CBI38846.3| unnamed protein product [Vitis vinifera]

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 230/331 (69%), Positives = 277/331 (83%), Gaps = 4/331 (1%)

Query: 1   MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGAS 60
           ME  KGRVCVTGGTGFIASWL+M+LL HGYSV  T+RS   P+ +  KD+S+L NLPGAS
Sbjct: 1   MEGEKGRVCVTGGTGFIASWLVMKLLQHGYSVNATIRSH--PQSK--KDVSYLTNLPGAS 56

Query: 61  ERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCL 120
           E+LRI++ADLS P  F+AAI GC GV HVA PVDFED EPEE +T+R++ GTLGILK+CL
Sbjct: 57  EKLRIYNADLSDPSSFEAAIEGCIGVFHVAHPVDFEDTEPEETVTKRSVEGTLGILKACL 116

Query: 121 KSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAAL 180
            S TVKRVVYTSS AAV  NDK  D+ DE+ W+DVD+++ L+ WG+SY ISKT+TER+AL
Sbjct: 117 NSKTVKRVVYTSSTAAVVLNDKGGDIKDESSWTDVDFLKALNYWGQSYMISKTITERSAL 176

Query: 181 EFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVA 240
           +FA+EHGLDLVT+ PS VVGPFICP+F GSV ++LAL+LG++++Y  L+N SMVHVDDV 
Sbjct: 177 DFAQEHGLDLVTVTPSFVVGPFICPRFPGSVNTALALVLGDQQQYHVLMNISMVHVDDVC 236

Query: 241 RAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSS 300
            AHIFLLE PDAKGRYICSS  LT+ EM+EFLSAKYP+ PIPT+DSL E++GY  PG SS
Sbjct: 237 SAHIFLLECPDAKGRYICSSDRLTLNEMSEFLSAKYPQLPIPTIDSLKEVQGYGTPGVSS 296

Query: 301 KKLLDAGFRYNYGIDEMFDEAIQCCKEKGYL 331
           KKLLD GF+Y YG+DEMFDEAIQCCKEKG+L
Sbjct: 297 KKLLDTGFKYKYGLDEMFDEAIQCCKEKGFL 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063846|ref|XP_002301290.1| predicted protein [Populus trichocarpa] gi|222843016|gb|EEE80563.1| predicted protein [Populus trichocarpa]

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 229/331 (69%), Positives = 277/331 (83%), Gaps = 4/331 (1%)

Query: 1   MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGAS 60
           ME  KG+VCVTGGTGF+ASWLIMRLL+HGYSV TT+R   DPEH+  +D+SFL +LP AS
Sbjct: 1   MEGDKGKVCVTGGTGFLASWLIMRLLEHGYSVHTTIRP--DPEHK--RDVSFLTSLPEAS 56

Query: 61  ERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCL 120
           E+L+IF ADLS P+ F+ AI GC GV HVATPVDFE KEPEEV+ QRAI+GTLGILK+CL
Sbjct: 57  EKLQIFQADLSDPNSFEVAIKGCIGVFHVATPVDFESKEPEEVVVQRAIDGTLGILKACL 116

Query: 121 KSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAAL 180
            S TVKRVVYTSS AAV +ND DVD MDE++W+DV+Y++ L S+   Y ISKTLTE+ AL
Sbjct: 117 NSMTVKRVVYTSSGAAVVFNDSDVDTMDESYWTDVEYVKALKSFAGPYFISKTLTEKRAL 176

Query: 181 EFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVA 240
           EFA+EHG DLV++IPS + GPFIC KF GSV +SLA++LG +++YG LLN SMVHVDDVA
Sbjct: 177 EFADEHGFDLVSIIPSFINGPFICSKFPGSVHTSLAMVLGEQQKYGTLLNMSMVHVDDVA 236

Query: 241 RAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSS 300
           RAHIFL E+PDAKGR ICSSHT+TI++M++FLS+KYPE P+P+++SL EIEG R  G SS
Sbjct: 237 RAHIFLFEHPDAKGRNICSSHTITIEKMSKFLSSKYPECPLPSLESLKEIEGTRLAGLSS 296

Query: 301 KKLLDAGFRYNYGIDEMFDEAIQCCKEKGYL 331
           KKLLD GF++  G+DEMFD AIQ CKEKGYL
Sbjct: 297 KKLLDLGFKFKCGLDEMFDGAIQSCKEKGYL 327

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453893|ref|XP_002278874.1| PREDICTED: dihydroflavonol-4-reductase-like [Vitis vinifera]

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 223/331 (67%), Positives = 268/331 (80%), Gaps = 6/331 (1%)

Query: 2   EEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSK-DLSFLKNLPGAS 60
           E  KGRVCVTGGTGFIASWLIM+LL HGYSV  T+RS     H  SK D+S++ NLPGAS
Sbjct: 26  ENEKGRVCVTGGTGFIASWLIMKLLQHGYSVNATIRS-----HPGSKKDISYITNLPGAS 80

Query: 61  ERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCL 120
           E+L+IF+ADLS P  F+ A+ GC GV HVA PVDFE +EPEE +T+R++ GTL ILK+CL
Sbjct: 81  EKLQIFNADLSEPHSFEPALEGCIGVFHVAHPVDFEAREPEETVTRRSVEGTLAILKACL 140

Query: 121 KSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAAL 180
            S TVKRVVYTSS +AV +NDKD DM DE+ WSDV++IR L S+   Y ISKT TERAAL
Sbjct: 141 NSKTVKRVVYTSSASAVVFNDKDEDMKDESSWSDVEFIRSLGSFAGPYMISKTETERAAL 200

Query: 181 EFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVA 240
           EFAE+HGLDLVTL+PS VVGPF+CP   GSV+ +L +I G +++Y  L+NTSMVHVDDVA
Sbjct: 201 EFAEKHGLDLVTLLPSFVVGPFLCPFLPGSVQMALTMIKGIQDQYQNLMNTSMVHVDDVA 260

Query: 241 RAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSS 300
            AHIFLL YP+AKGRY CSS+T+TI EM+EFLSAKYP+ PIPT +SL+ I+GYR PG SS
Sbjct: 261 SAHIFLLHYPNAKGRYNCSSNTITINEMSEFLSAKYPQLPIPTTESLSGIQGYRTPGLSS 320

Query: 301 KKLLDAGFRYNYGIDEMFDEAIQCCKEKGYL 331
           KKLLD GF + +G+DEMFD A+QCCKEKG+L
Sbjct: 321 KKLLDTGFVFKHGLDEMFDGAVQCCKEKGFL 351

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570805|ref|XP_002526355.1| cinnamoyl-CoA reductase, putative [Ricinus communis] gi|223534314|gb|EEF36026.1| cinnamoyl-CoA reductase, putative [Ricinus communis]

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 220/332 (66%), Positives = 271/332 (81%), Gaps = 7/332 (2%)

Query: 1   MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGAS 60
           MEE K  V VTGGTG++ASWLIMRLLDHGYSV TT+R   DPE +  +D++FL +LPGAS
Sbjct: 1   MEENK--VAVTGGTGYVASWLIMRLLDHGYSVHTTIRP--DPEQK--RDITFLTSLPGAS 54

Query: 61  ERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFE-DKEPEEVITQRAINGTLGILKSC 119
           ++L+IFHADLS P+ FD AI GC GV HVATP      +EPEEV+T++AI+GT+GILK C
Sbjct: 55  DKLKIFHADLSDPNSFDDAIKGCIGVFHVATPTPGHYTEEPEEVVTRKAIDGTIGILKVC 114

Query: 120 LKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAA 179
           L S TVKRVVYTSS +AV +NDK+  +MDE+FWSDVDYI+ L+S+   Y +SKTL E+ A
Sbjct: 115 LNSKTVKRVVYTSSTSAVDFNDKNAQVMDESFWSDVDYIKALNSFASPYWVSKTLAEKKA 174

Query: 180 LEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDV 239
           LEFAEEHGLDLVT+IPS VVGPFICP    SV ++LA+I G  + Y  L NTSMVHVDD+
Sbjct: 175 LEFAEEHGLDLVTVIPSFVVGPFICPNLPASVEAALAMIFGKSDLYNLLRNTSMVHVDDL 234

Query: 240 ARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSS 299
           ARAHIFL E+P+AKGR+ICSS  +TI+EM++FLSAKYP++PIPTVDSL +IEG++ P  S
Sbjct: 235 ARAHIFLFEHPNAKGRHICSSDRITIEEMSKFLSAKYPQFPIPTVDSLKDIEGFQGPALS 294

Query: 300 SKKLLDAGFRYNYGIDEMFDEAIQCCKEKGYL 331
           SKKLLD GF++ YG+DEMFD AIQCCKEKG++
Sbjct: 295 SKKLLDYGFKFMYGLDEMFDGAIQCCKEKGHI 326

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087435|ref|XP_002308165.1| predicted protein [Populus trichocarpa] gi|222854141|gb|EEE91688.1| predicted protein [Populus trichocarpa]

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 220/332 (66%), Positives = 267/332 (80%), Gaps = 5/332 (1%)

Query: 1   MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGAS 60
           ME  KGRVCVTGGTGF+ASWLIM+LL+ GYSV TTVR    PEH+  +D+SFL +LPG S
Sbjct: 1   MEGEKGRVCVTGGTGFVASWLIMKLLEQGYSVNTTVRPH--PEHK--RDVSFLTSLPGGS 56

Query: 61  ERLRIFHADLSHPDGFDAAIAGCTGVLHVATP-VDFEDKEPEEVITQRAINGTLGILKSC 119
           ERL IF+ADLS P GFD AI GC GV HVA+P +DF + EPEEV+ QRA +GTLGILK+C
Sbjct: 57  ERLEIFYADLSEPSGFDVAIKGCIGVFHVASPTLDFGNGEPEEVVIQRATDGTLGILKAC 116

Query: 120 LKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAA 179
           L S TVKRVV TSS +AV +N   V+MMDE +WSDVDYI+  +     Y ISKTLTE+ A
Sbjct: 117 LNSKTVKRVVLTSSASAVAFNGSGVEMMDEAYWSDVDYIKASNLPIGPYFISKTLTEKRA 176

Query: 180 LEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDV 239
           LEFA+EHGLDLVTL P+ + GPFICP    SV  SLA++LG+RE+YG L+N  M+H+DDV
Sbjct: 177 LEFAQEHGLDLVTLAPTYIHGPFICPNMPSSVHISLAMVLGDREQYGLLINAPMLHIDDV 236

Query: 240 ARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSS 299
           ARAHIFLLEYP+AKGRYICS  T+TI+EM+EFLSAKYP+Y IPT++ L ++EG + PG S
Sbjct: 237 ARAHIFLLEYPEAKGRYICSKDTITIEEMSEFLSAKYPDYSIPTLEYLKDVEGLKIPGLS 296

Query: 300 SKKLLDAGFRYNYGIDEMFDEAIQCCKEKGYL 331
           SKKL+D+GF++ YG++EMFD AIQCCKEKG L
Sbjct: 297 SKKLVDSGFKFRYGLEEMFDGAIQCCKEKGLL 328

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541306|ref|XP_002511717.1| cinnamoyl-CoA reductase, putative [Ricinus communis] gi|223548897|gb|EEF50386.1| cinnamoyl-CoA reductase, putative [Ricinus communis]

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 212/329 (64%), Positives = 269/329 (81%), Gaps = 4/329 (1%)

Query: 3   EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASER 62
           + K +  +TGGTGF+ASWL+MRLL+HGYSV TT+R   DPEH+  +D+SFL +LPGAS++
Sbjct: 19  QTKVQYVLTGGTGFLASWLVMRLLEHGYSVHTTIRP--DPEHK--RDVSFLTSLPGASKK 74

Query: 63  LRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKS 122
           L+IF ADLS PD F+AAI GC GV   ATPVD E+KEPE+VI +RA++G LGILK+CL S
Sbjct: 75  LQIFEADLSDPDSFEAAIKGCIGVFLAATPVDIENKEPEKVIVKRALDGALGILKTCLNS 134

Query: 123 GTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEF 182
            TVKRVVYTSS +AV +NDK    MDE+FW+D +YI+ L S   SY ISK LTE+ AL+F
Sbjct: 135 KTVKRVVYTSSASAVVFNDKVAHAMDESFWNDTNYIKSLMSPFASYLISKILTEKKALDF 194

Query: 183 AEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARA 242
           A+EHGLDLVT++PS +VGPF CPKF GSV +S A+ILG +E+Y  LLN SMVH DDVARA
Sbjct: 195 AQEHGLDLVTVVPSFIVGPFNCPKFPGSVHTSFAMILGEKEQYSALLNMSMVHTDDVARA 254

Query: 243 HIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSSKK 302
           HIFLLE PDAKGRYICSS+T+TI+E+++FLS KYPEYPIPT+D+L +I+G+++   SS+K
Sbjct: 255 HIFLLENPDAKGRYICSSNTMTIEELSKFLSHKYPEYPIPTIDALQDIKGHKSARLSSQK 314

Query: 303 LLDAGFRYNYGIDEMFDEAIQCCKEKGYL 331
           LL  GF++ +G DEMFD+AIQ C+EKG+L
Sbjct: 315 LLKLGFKFKHGPDEMFDDAIQTCREKGHL 343

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	331
TAIR|locus:2050882	364	BEN1 [Arabidopsis thaliana (ta	0.969	0.881	0.515	9.7e-80
TAIR|locus:2165427	382	DFR "dihydroflavonol 4-reducta	0.975	0.845	0.465	1.3e-75
TAIR|locus:2122093	326	DRL1 "dihydroflavonol 4-reduct	0.957	0.972	0.441	3.1e-67
TAIR|locus:2195733	340	BAN "BANYULS" [Arabidopsis tha	0.951	0.926	0.423	4.8e-62
TAIR|locus:2201272	321	TKPR2 "tetraketide alpha-pyron	0.939	0.968	0.400	4.9e-53
TAIR|locus:2150315	326	AT5G19440 [Arabidopsis thalian	0.942	0.957	0.404	2.1e-52
TAIR|locus:2056171	318	AT2G02400 [Arabidopsis thalian	0.939	0.977	0.358	9.2e-52
TAIR|locus:2031255	320	AT1G25460 [Arabidopsis thalian	0.936	0.968	0.400	1.7e-50
TAIR|locus:2033904	325	AT1G51410 [Arabidopsis thalian	0.948	0.966	0.386	1.7e-50
TAIR|locus:2171258	324	AT5G58490 [Arabidopsis thalian	0.936	0.956	0.379	6.7e-49

TAIR|locus:2050882 BEN1 [Arabidopsis thaliana (taxid:3702)]

 Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
 Identities = 171/332 (51%), Positives = 221/332 (66%)

Query:     6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRI 65
             G VCVTGG+GF+ASWLIMRLL  GYSV  TVR+  +    N KD+S+L  LP ASERL+I
Sbjct:    38 GLVCVTGGSGFVASWLIMRLLQRGYSVRATVRTNSEG---NKKDISYLTELPFASERLQI 94

Query:    66 FHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTV 125
             F ADL+ P+ F  AI GC  V HVA P+D    E EE +T+R + G +GILKSCL + TV
Sbjct:    95 FTADLNEPESFKPAIEGCKAVFHVAHPMDPNSNETEETVTKRTVQGLMGILKSCLDAKTV 154

Query:   126 KRVVYTSSNAAVFY---NDKDVDMMDETFWSDVDYIR--KLDSWGKSYAISKTLTERAAL 180
             KR  YTSS   VFY   N      +DE+ WSDV+  R  K      SY +SK   E AAL
Sbjct:   155 KRFFYTSSAVTVFYSGGNGGGGGEVDESVWSDVEVFRNQKEKRVSSSYVVSKMAAETAAL 214

Query:   181 EFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNT-SMVHVDDV 239
             EF  ++GL++VTL+  +VVGPFI      SV  SLA++ GN +E  +L +T +MVH+DDV
Sbjct:   215 EFGGKNGLEVVTLVIPLVVGPFISSSLPSSVFISLAMLFGNYKEK-YLFDTYNMVHIDDV 273

Query:   240 ARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSS 299
             ARA IFLLE P AKGRYICSS  + I E+ EFLS K+P++ +P++D L + +  +  G S
Sbjct:   274 ARAMIFLLEKPVAKGRYICSSVEMKIDEVFEFLSTKFPQFQLPSID-LNKYKVEKRMGLS 332

Query:   300 SKKLLDAGFRYNYGIDEMFDEAIQCCKEKGYL 331
             SKKL  AGF + YG +E+F  AI+ C+ +G+L
Sbjct:   333 SKKLKSAGFEFKYGAEEIFSGAIRSCQARGFL 364

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=ISS

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0009813 "flavonoid biosynthetic process" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0010422 "regulation of brassinosteroid biosynthetic process" evidence=IMP

GO:0016131 "brassinosteroid metabolic process" evidence=IMP

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2165427 DFR "dihydroflavonol 4-reductase" [Arabidopsis thaliana (taxid:3702)]

 Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
 Identities = 155/333 (46%), Positives = 213/333 (63%)

Query:     1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGAS 60
             M   K  VCVTG +GFI SWL+MRLL+ GY V  TVR   DP   N K +  L +LP A 
Sbjct:     1 MVSQKETVCVTGASGFIGSWLVMRLLERGYFVRATVR---DPG--NLKKVQHLLDLPNAK 55

Query:    61 ERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCL 120
               L ++ ADLS    +D AI GC GV HVATP+DFE K+PE  + +  +NG LGI+K+C+
Sbjct:    56 TLLTLWKADLSEEGSYDDAINGCDGVFHVATPMDFESKDPENEVIKPTVNGMLGIMKACV 115

Query:   121 KSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYI--RKLDSWGKSYAISKTLTERA 178
             K+ TV+R V+TSS   V   +   ++ DE  WSD+++I  +K+  W   Y +SKTL E+A
Sbjct:   116 KAKTVRRFVFTSSAGTVNVEEHQKNVYDENDWSDLEFIMSKKMTGW--MYFVSKTLAEKA 173

Query:   179 ALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDD 238
             A +FAEE GLD +++IP++VVGPFI      S+ ++L+ I  N   Y  +     VH+DD
Sbjct:   174 AWDFAEEKGLDFISIIPTLVVGPFITTSMPPSLITALSPITRNEAHYSIIRQGQYVHLDD 233

Query:   239 VARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGS 298
             +  AHIFL E   AKGRYICSSH  TI  +++FL  KYPEY +P+     + E  ++   
Sbjct:   234 LCNAHIFLYEQAAAKGRYICSSHDATILTISKFLRPKYPEYNVPSTFEGVD-ENLKSIEF 292

Query:   299 SSKKLLDAGFRYNYGIDEMFDEAIQCCKEKGYL 331
             SSKKL D GF + Y ++EMF E+I+ C++KG+L
Sbjct:   293 SSKKLTDMGFNFKYSLEEMFIESIETCRQKGFL 325

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0042406 "extrinsic to endoplasmic reticulum membrane" evidence=TAS

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA;IMP;TAS

GO:0045552 "dihydrokaempferol 4-reductase activity" evidence=IMP;TAS

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2122093 DRL1 "dihydroflavonol 4-reductase-like1" [Arabidopsis thaliana (taxid:3702)]

 Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
 Identities = 148/335 (44%), Positives = 207/335 (61%)

Query:     1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGAS 60
             M++ KG+VCVTG +GF+ASWL+ RLL  GY V  TVR   DP   N K L+ L  L GA 
Sbjct:     1 MDQAKGKVCVTGASGFLASWLVKRLLLEGYEVIGTVR---DPG--NEKKLAHLWKLEGAK 55

Query:    61 ERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCL 120
             ERLR+  ADL     FD AI GC GV H A+PV      PEE I + AI GTL +L+SC 
Sbjct:    56 ERLRLVKADLMEEGSFDNAIMGCQGVFHTASPVLKPTSNPEEEILRPAIEGTLNVLRSCR 115

Query:   121 KSGTVKRVVYTSSNAAVFYNDKDVDM---MDETFWSDVDYIRKLDSWGKSYAISKTLTER 177
             K+ ++KRVV TSS++ V   D D D    +DE+ W+ V+  ++   W   YA+SKTL E+
Sbjct:   116 KNPSLKRVVLTSSSSTVRIRD-DFDPKIPLDESIWTSVELCKRFQVW---YALSKTLAEQ 171

Query:   178 AALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVD 237
             AA +F+EE+G+DLVT++PS +VGP + P    +    L L+ G  E++ +      VH+D
Sbjct:   172 AAWKFSEENGIDLVTVLPSFLVGPSLPPDLCSTASDVLGLLKGETEKFQWHGQMGYVHID 231

Query:   238 DVARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPT-VDSLAEIEGYRAP 296
             DVAR HI + E+  A+GRYICSS+ ++++E+  FLSA+YP  PIP   + L  +  Y   
Sbjct:   232 DVARTHIVVFEHEAAQGRYICSSNVISLEELVSFLSARYPSLPIPKRFEKLNRLH-Y--- 287

Query:   297 GSSSKKLLDAGFRYNYGIDEMFDEAIQCCKEKGYL 331
                + K+   G ++   ++EMFD+ I    E+GYL
Sbjct:   288 DFDTSKIQSLGLKFK-SLEEMFDDCIASLVEQGYL 321

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0009555 "pollen development" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0010584 "pollen exine formation" evidence=IMP

GO:0080110 "sporopollenin biosynthetic process" evidence=IMP

TAIR|locus:2195733 BAN "BANYULS" [Arabidopsis thaliana (taxid:3702)]

 Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
 Identities = 145/342 (42%), Positives = 215/342 (62%)

Query:     4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERL 63
             G  + CV GGTG +AS LI  LL  GY V TTVR   DPE  N K ++ L+ L    + L
Sbjct:     9 GSKKACVIGGTGNLASILIKHLLQSGYKVNTTVR---DPE--NEKKIAHLRKLQELGD-L 62

Query:    64 RIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSG 123
             +IF ADL+  D F+++ +GC  + HVATP++F+ ++PE+ + + AI G + +LKSCLKS 
Sbjct:    63 KIFKADLTDEDSFESSFSGCEYIFHVATPINFKSEDPEKDMIKPAIQGVINVLKSCLKSK 122

Query:   124 TVKRVVYTSSNAAVFYNDKDVD--MMDETFWSDVDYI--RKLDSWGKSYAISKTLTERAA 179
             +VKRV+YTSS AAV  N+      +M+E  W+DV+++   K  +WG  Y ISK L E+ A
Sbjct:   123 SVKRVIYTSSAAAVSINNLSGTGIVMNEENWTDVEFLTEEKPFNWG--YPISKVLAEKTA 180

Query:   180 LEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR------EEYGFLLNT-S 232
              EFA+E+ ++LVT+IP+++ G  +      S+  S++ I G        +E   L  + S
Sbjct:   181 WEFAKENKINLVTVIPALIAGNSLLSDPPSSLSLSMSFITGKEMHVTGLKEMQKLSGSIS 240

Query:   233 MVHVDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIE- 291
              VHVDD+ARAH+FL E   A GRYIC ++  ++ E+A+FL  +YP+Y +     L+E E 
Sbjct:   241 FVHVDDLARAHLFLAEKETASGRYICCAYNTSVPEIADFLIQRYPKYNV-----LSEFEE 295

Query:   292 GYRAPGS--SSKKLLDAGFRYNYGIDEMFDEAIQCCKEKGYL 331
             G   P    SS+KL++ GFR+ YGI+EM+D+ I+  + KG +
Sbjct:   296 GLSIPKLTLSSQKLINEGFRFEYGINEMYDQMIEYFESKGLI 337

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0033729 "anthocyanidin reductase activity" evidence=IDA

GO:0009964 "negative regulation of flavonoid biosynthetic process" evidence=IMP

GO:0016491 "oxidoreductase activity" evidence=ISS

TAIR|locus:2201272 TKPR2 "tetraketide alpha-pyrone reductase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 131/327 (40%), Positives = 183/327 (55%)

Query:    10 VTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHAD 69
             VTGGTGFIAS++I  LL+ G++V TTVR+  D E      + FL    GA +RL+I  AD
Sbjct:     6 VTGGTGFIASYIIKSLLELGHTVRTTVRNPRDEEK-----VGFLWEFQGAKQRLKILQAD 60

Query:    70 LSHPDGFDAAIAGCTGVLHVATPVDF-EDKEPEEVITQRAINGTLGILKSCLKS-GTVKR 127
             L+    FD A+ G  GV H A+PV   +D   +E +    I GT  ++ SC KS  T+KR
Sbjct:    61 LTVEGSFDEAVNGVDGVFHTASPVLVPQDHNIQETLVDPIIKGTTNVMSSCAKSKATLKR 120

Query:   128 VVYTSSNAAVFYN-DK-DVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE 185
             +V TSS +++ Y  D  +   ++E+ WSD +Y ++ + W   Y  +KTL ER A   AEE
Sbjct:   121 IVLTSSCSSIRYRFDATEASPLNESHWSDPEYCKRFNLW---YGYAKTLGEREAWRIAEE 177

Query:   186 HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIF 245
              GLDLV + PS VVGP + PK   ++   LA+  G   EY        VH+DDV  AH+ 
Sbjct:   178 KGLDLVVVNPSFVVGPLLGPKPTSTLLMILAIAKGLAGEYPNF-TVGFVHIDDVVAAHVL 236

Query:   246 LLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGS-SSKKLL 304
              +E P A GR ICSS      E+ E +  KYP YP    +  +  EG  +P S  ++K+ 
Sbjct:   237 AMEEPKASGRIICSSSVAHWSEIIELMRNKYPNYPFE--NKCSNKEGDNSPHSMDTRKIH 294

Query:   305 DAGFRYNYGIDEMFDEAIQCCKEKGYL 331
             + GF     + EMFD+ I   ++KG L
Sbjct:   295 ELGFGSFKSLPEMFDDCIISFQKKGLL 321

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0010584 "pollen exine formation" evidence=IMP

GO:0080110 "sporopollenin biosynthetic process" evidence=IMP

TAIR|locus:2150315 AT5G19440 [Arabidopsis thaliana (taxid:3702)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 135/334 (40%), Positives = 181/334 (54%)

Query:     4 GKGRV-CVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASER 62
             G+G+V CVTG +G+IASWL+  LL  GY+V  +VR   DP     K    L +L GA ER
Sbjct:     5 GEGKVVCVTGASGYIASWLVKFLLSRGYTVKASVRDPSDP-----KKTQHLVSLEGAKER 59

Query:    63 LRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKS 122
             L +F ADL     FD+AI GC GV H A+P   + K+P+  +   A+ GTL +L SC K+
Sbjct:    60 LHLFKADLLEQGSFDSAIDGCHGVFHTASPFFNDAKDPQAELIDPAVKGTLNVLNSCAKA 119

Query:   123 GTVKRVVYTSSNAAVFYNDK----DVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERA 178
              +VKRVV TSS AAV YN K    DV + DET++SD +       W   Y +SKTL E A
Sbjct:   120 SSVKRVVVTSSMAAVGYNGKPRTPDVTV-DETWFSDPELCEASKMW---YVLSKTLAEDA 175

Query:   179 ALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDD 238
             A + A+E GLD+VT+ P+MV+GP + P    S  + L LI G +      L+   V+V D
Sbjct:   176 AWKLAKEKGLDIVTINPAMVIGPLLQPTLNTSAAAILNLINGAKTFPN--LSFGWVNVKD 233

Query:   239 VARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPT--VDSLAEIEGYRAP 296
             VA AHI   E P A GRY      +   E+   L   YP  P+P   VD    +  Y+  
Sbjct:   234 VANAHIQAFEVPSANGRYCLVERVVHHSEIVNILRELYPNLPLPERCVDENPYVPTYQVS 293

Query:   297 GSSSKKLLDAGFRYNYGIDEMFDEAIQCCKEKGY 330
                ++ L   G  Y   +     E ++  KEKG+
Sbjct:   294 KDKTRSL---GIDY-IPLKVSIKETVESLKEKGF 323

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

TAIR|locus:2056171 AT2G02400 [Arabidopsis thaliana (taxid:3702)]

 Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
 Identities = 119/332 (35%), Positives = 188/332 (56%)

Query:     5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLR 64
             K  VCVTG  GFI SW+I  L++ GY   T + + + P      D + L  LPG+  +++
Sbjct:     3 KETVCVTGANGFIGSWIIRTLIEKGY---TKIHASIYP----GSDPTHLLQLPGSDSKIK 55

Query:    65 IFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDK-EPEEVITQRAINGTLGILKSCLKSG 123
             IF ADL   D    AI GC GV HVA+P   +   +PE+ + + A+ GT+ +L++  K  
Sbjct:    56 IFEADLLDSDAISRAIDGCAGVFHVASPCTLDPPVDPEKELVEPAVKGTINVLEAA-KRF 114

Query:   124 TVKRVVYTSSNAAVFYNDKDVDMM--DETFWSDVDYIRKLDSWGKSYAISKTLTERAALE 181
              V+RVV TSS +A+  N    + +  DE+ WSD+D+ +    W   Y ISKTL E+AA E
Sbjct:   115 NVRRVVITSSISALVPNPNWPEKVPVDESSWSDLDFCKSRQKW---YPISKTLAEKAAWE 171

Query:   182 FAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE--EYGFLLNTSMVHVDDV 239
             F+E+HG ++VT+ PS  +GP + P    S    L L+ G+ E  E+ +L    +VHV DV
Sbjct:   172 FSEKHGTNIVTIHPSTCLGPLLQPNLNASCAVLLQLLQGSTETQEHHWL---GVVHVKDV 228

Query:   240 ARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSS 299
             A+ H+ L E PDA GR++C++      E A  +S  +PE+ +   D   +  G  +   +
Sbjct:   229 AKGHVMLFETPDASGRFLCTNGIYQFSEFAALVSKLFPEFAVHKFDKETQ-PGLTSCNDA 287

Query:   300 SKKLLDAGFRYNYGIDEMFDEAIQCCKEKGYL 331
             +K+L++ G  +   +++   E +Q  ++KG+L
Sbjct:   288 AKRLIELGLVFT-AVEDAVKETVQSLRDKGFL 318

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0016621 "cinnamoyl-CoA reductase activity" evidence=ISS

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2031255 AT1G25460 [Arabidopsis thaliana (taxid:3702)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 131/327 (40%), Positives = 176/327 (53%)

Query:    10 VTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHAD 69
             VTGGT FIAS +I  LL+ G+ V TTVR   D E      + FL +L GA ERL+IF AD
Sbjct:     6 VTGGTSFIASHVIKSLLEFGHYVRTTVRDSEDEEK-----VGFLWDLKGAKERLKIFEAD 60

Query:    70 LSHPDGFDAAIAGCTGVLHVATPVDFE-DKEPEEVITQRAINGTLGILKSCLKS-GTVKR 127
             L+    FD A+ G  GV H+A+ V    D    +      I+GT+ ++ SC KS  TVKR
Sbjct:    61 LTIEGSFDEAVNGVDGVFHIASRVSVRLDNNNLDKFDPN-ISGTMNVMNSCAKSRNTVKR 119

Query:   128 VVYTSSNAAVFYN-DK-DVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE 185
             +V TSS+ A+ Y  D   V  ++E+ W+D++Y +    W   YA  KTL E+ A   A +
Sbjct:   120 IVLTSSSTAIRYRFDATQVSPLNESHWTDLEYCKHFKIW---YAYKKTLGEKEAWRIAAD 176

Query:   186 HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIF 245
               L+LV +IPS  +GP + PK   S    L++I G R  Y        VH+DDV  A I 
Sbjct:   177 KKLNLVVVIPSFCIGPILSPKPTSSPLIFLSIIKGTRGTYPNFRG-GFVHIDDVVAAQIL 235

Query:   246 LLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGS-SSKKLL 304
              +E P A GR +CSS      E+ E L  KYP YP  T       EG   P S  + K+ 
Sbjct:   236 AMEEPKASGRILCSSSVAHWSEIIEMLRIKYPLYPFET--KCGSEEGKDMPHSLDTTKIH 293

Query:   305 DAGFRYNYGIDEMFDEAIQCCKEKGYL 331
             + GF     + EMFD+ I+C ++KG L
Sbjct:   294 ELGFASFKSLTEMFDDCIKCFQDKGLL 320

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

TAIR|locus:2033904 AT1G51410 [Arabidopsis thaliana (taxid:3702)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 130/336 (38%), Positives = 187/336 (55%)

Query:     2 EEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASE 61
             EE K  VCVTG +G+IASW++  LL  GY+V  +VR   DP  R ++ L  L+   GA E
Sbjct:     4 EEEK-TVCVTGASGYIASWIVKLLLLRGYTVKASVRDPNDP--RKTEHLLALE---GAEE 57

Query:    62 RLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLK 121
             RL++F A+L     FD+AI GC GV H A+P   + K+P+  +   A+ GT+ +L SCLK
Sbjct:    58 RLKLFKANLLEEGSFDSAIDGCEGVFHTASPFYHDVKDPQAELLDPAVKGTINVLSSCLK 117

Query:   122 SGTVKRVVYTSSNAAVFYNDKD---VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERA 178
             + +VKRVV TSS AAV +N        ++DET+++D DY R    W   Y +SKTL E A
Sbjct:   118 TSSVKRVVLTSSIAAVAFNGMPRTPETIVDETWFADPDYCRASKLW---YVLSKTLAENA 174

Query:   179 ALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNT-SMVHVD 237
             A +FA+E+ L LV++ P+MV+GP + P    S  + L+LI G +    F   T   V+V 
Sbjct:   175 AWKFAKENNLQLVSINPAMVIGPLLQPTLNTSAAAVLSLIKGAQT---FPNATFGWVNVK 231

Query:   238 DVARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPT--VDSLAEIEGYRA 295
             DVA AHI   E PDA GRY          E+   L   YP++ +P    D    I  Y+ 
Sbjct:   232 DVANAHIQAFENPDADGRYCLVERVAHYSEVVNILHDLYPDFQLPEKCADEKIYIPTYKV 291

Query:   296 PGSSSKKLLDAGFRYNYGIDEMFDEAIQCCKEKGYL 331
                S +K    G  +   ++    E ++  ++KG++
Sbjct:   292 ---SKEKAESLGVEF-VPLEVSIKETVESLRDKGFI 323

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=ISS

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

TAIR|locus:2171258 AT5G58490 [Arabidopsis thaliana (taxid:3702)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 125/329 (37%), Positives = 185/329 (56%)

Query:     8 VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH 67
             VCVTG +G I SWL+ +LL  GYSV  TV++  D      K+   L+ L GA+ RL +F 
Sbjct:     9 VCVTGASGCIGSWLVHQLLLRGYSVHATVKNLQD-----EKETKHLEGLEGAATRLHLFE 63

Query:    68 ADLSHPDGFDAAIAGCTGVLHVATP--VDFEDKEPEEVITQRAINGTLGILKSCLKSGTV 125
              DL   D   AAI GC+GV H+A+P  VD E ++P++ +   A+ GT+ +L +  K  +V
Sbjct:    64 MDLLQYDTVSAAINGCSGVFHLASPCIVD-EVQDPQKQLLDPAVKGTINVLTAA-KEASV 121

Query:   126 KRVVYTSSNAAVFYNDK-DVDMM-DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFA 183
             KRVV TSS +A+  +     D + +E  W+  DY R+   W   Y +SKTL E+AA EFA
Sbjct:   122 KRVVVTSSISAITPSPNWPADKIKNEECWAAEDYCRQNGLW---YPLSKTLAEKAAWEFA 178

Query:   184 EEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEY-GFLLNTSMVHVDDVARA 242
             EE GLD+V + P  V+GP I P    S+   L L+ G  E Y  F + +  VH  DVA A
Sbjct:   179 EEKGLDVVVVNPGTVMGPVIPPSLNASMHMLLRLLQGCTETYENFFMGS--VHFKDVALA 236

Query:   243 HIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSSKK 302
             HI + E P +KGR++C        +    ++  YP Y +P +    +  G     ++SKK
Sbjct:   237 HILVYEDPYSKGRHLCVEAISHYGDFVAKVAELYPNYNVPKLPRETQ-PGLLRDKNASKK 295

Query:   303 LLDAGFRYNYGIDEMFDEAIQCCKEKGYL 331
             L+D G ++   ++E+  E ++  K KG++
Sbjct:   296 LIDLGLKF-ISMEEIIKEGVESLKSKGFI 323

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0016621 "cinnamoyl-CoA reductase activity" evidence=ISS

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9UT59	YKJ7_SCHPO	1, ., 1, ., 1, ., -	0.3107	0.8731	0.8601	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.3.1	0.921
4th Layer	1.1.1.219	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	331
cd08958	293	cd08958, FR_SDR_e, flavonoid reductase (FR), exten	1e-145
PLN02650	351	PLN02650, PLN02650, dihydroflavonol-4-reductase	1e-123
PLN00198	338	PLN00198, PLN00198, anthocyanidin reductase; Provi	8e-99
cd05193	295	cd05193, AR_like_SDR_e, aldehyde reductase, flavon	3e-89
PLN02896	353	PLN02896, PLN02896, cinnamyl-alcohol dehydrogenase	2e-87
PLN02662	322	PLN02662, PLN02662, cinnamyl-alcohol dehydrogenase	5e-80
cd05227	301	cd05227, AR_SDR_e, aldehyde reductase, extended (e	2e-73
PLN02986	322	PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase	2e-61
PLN02989	325	PLN02989, PLN02989, cinnamyl-alcohol dehydrogenase	1e-56
PLN02214	342	PLN02214, PLN02214, cinnamoyl-CoA reductase	4e-56
COG0451	314	COG0451, WcaG, Nucleoside-diphosphate-sugar epimer	2e-42
cd05228	318	cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr	2e-38
PLN02583	297	PLN02583, PLN02583, cinnamoyl-CoA reductase	1e-33
TIGR03466	328	TIGR03466, HpnA, hopanoid-associated sugar epimera	4e-31
pfam01370	233	pfam01370, Epimerase, NAD dependent epimerase/dehy	1e-28
PLN02686	367	PLN02686, PLN02686, cinnamoyl-CoA reductase	2e-28
cd08946	200	cd08946, SDR_e, extended (e) SDRs	6e-24
cd05256	304	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-e	2e-20
cd05232	303	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase,	2e-18
cd05263	293	cd05263, MupV_like_SDR_e, Pseudomonas fluorescens	7e-17
pfam01073	280	pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydr	1e-16
cd05257	316	cd05257, Arna_like_SDR_e, Arna decarboxylase_like,	1e-14
cd05271	273	cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ub	2e-14
cd05241	331	cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid d	3e-14
cd09813	335	cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD	5e-14
cd09811	354	cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD	4e-13
cd05265	250	cd05265, SDR_a1, atypical (a) SDRs, subgroup 1	4e-13
cd05242	296	cd05242, SDR_a8, atypical (a) SDRs, subgroup 8	5e-13
cd05262	291	cd05262, SDR_a7, atypical (a) SDRs, subgroup 7	6e-13
pfam07993	245	pfam07993, NAD_binding_4, Male sterility protein	2e-12
cd05264	300	cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase	4e-12
cd05260	316	cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase	4e-11
cd05243	203	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	4e-11
cd05240	306	cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase	7e-11
TIGR04180	297	TIGR04180, EDH_00030, NAD dependent epimerase/dehy	5e-10
cd05239	300	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, exte	6e-09
TIGR01777	291	TIGR01777, yfcH, TIGR01777 family protein	8e-09
pfam13460	182	pfam13460, NAD_binding_10, NADH(P)-binding	1e-08
cd05235	290	cd05235, SDR_e1, extended (e) SDRs, subgroup 1	1e-08
cd05234	305	cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase,	2e-08
cd05246	315	cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydra	2e-08
cd05247	323	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase,	3e-08
COG3320	382	COG3320, COG3320, Putative dehydrogenase domain of	4e-08
cd05251	242	cd05251, NmrA_like_SDR_a, NmrA (a transcriptional	8e-08
TIGR01746	367	TIGR01746, Thioester-redct, thioester reductase do	9e-08
cd05236	320	cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (F	9e-08
cd05230	305	cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase	2e-07
cd05258	337	cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, e	3e-07
cd05266	251	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4	3e-07
COG1090	297	COG1090, COG1090, Predicted nucleoside-diphosphate	4e-07
cd05245	293	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2	9e-07
cd05273	328	cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-	9e-07
COG0702	275	COG0702, COG0702, Predicted nucleoside-diphosphate	1e-06
cd05238	305	cd05238, Gne_like_SDR_e, Escherichia coli Gne (a n	1e-06
cd05269	272	cd05269, TMR_SDR_a, triphenylmethane reductase (TM	1e-06
cd05226	176	cd05226, SDR_e_a, Extended (e) and atypical (a) SD	1e-06
COG1087	329	COG1087, GalE, UDP-glucose 4-epimerase [Cell envel	2e-06
cd09812	339	cd09812, 3b-HSD_like_1_SDR_e, 3beta-hydroxysteroid	9e-06
PLN02240	352	PLN02240, PLN02240, UDP-glucose 4-epimerase	3e-05
PLN02427	386	PLN02427, PLN02427, UDP-apiose/xylose synthase	9e-05
cd05252	336	cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydrata	2e-04
cd08939	239	cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine	3e-04
cd05231	259	cd05231, NmrA_TMR_like_1_SDR_a, NmrA (a transcript	4e-04
cd08957	307	cd08957, WbmH_like_SDR_e, Bordetella bronchiseptic	7e-04
pfam08659	181	pfam08659, KR, KR domain	0.001
PRK10675	338	PRK10675, PRK10675, UDP-galactose-4-epimerase; Pro	0.001
cd05325	233	cd05325, carb_red_sniffer_like_SDR_c, carbonyl red	0.002
cd05254	280	cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4	0.002
cd05233	234	cd05233, SDR_c, classical (c) SDRs	0.002
cd08947	224	cd08947, NmrA_TMR_like_SDR_a, NmrA (a transcriptio	0.002
cd05244	207	cd05244, BVR-B_like_SDR_a, biliverdin IX beta redu	0.002

>gnl|CDD|187661 cd08958, FR_SDR_e, flavonoid reductase (FR), extended (e) SDRs

 Score =  411 bits (1060), Expect = e-145
 Identities = 159/305 (52%), Positives = 204/305 (66%), Gaps = 16/305 (5%)

Query: 8   VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH 67
           VCVTG +GFI SWL+ RLL  GY+V  TVR   DP   + K ++ L  L GA ERL++F 
Sbjct: 1   VCVTGASGFIGSWLVKRLLQRGYTVRATVR---DPG--DEKKVAHLLELEGAKERLKLFK 55

Query: 68  ADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKR 127
           ADL     FDAAI GC GV HVA+PVDF+ ++PEE + + A+ GTL +L++C K+ +VKR
Sbjct: 56  ADLLDYGSFDAAIDGCDGVFHVASPVDFDSEDPEEEMIEPAVKGTLNVLEACAKAKSVKR 115

Query: 128 VVYTSSNAAVFYND--KDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE 185
           VV+TSS AAV +N    +  ++DE+ WSD+D+ +K   W   YA+SKTL E+AA EFAEE
Sbjct: 116 VVFTSSVAAVVWNPNRGEGKVVDESCWSDLDFCKKTKLW---YALSKTLAEKAAWEFAEE 172

Query: 186 HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEY--GFLLNTSMVHVDDVARAH 243
           +GLDLVT+ PS+VVGPF+ P    S +  L+L+ GN E Y  G L   ++VHVDDVA AH
Sbjct: 173 NGLDLVTVNPSLVVGPFLQPSLNSSSQLILSLLKGNAEMYQNGSL---ALVHVDDVADAH 229

Query: 244 IFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSSKKL 303
           I L E P A GRYICSSH +T  E+A  L+ KYP+Y IPT     +  G      SSKKL
Sbjct: 230 ILLYEKPSASGRYICSSHVVTRPELAALLAKKYPQYNIPTKFED-DQPGVARVKLSSKKL 288

Query: 304 LDAGF 308
            D GF
Sbjct: 289 KDLGF 293

This subgroup contains FRs of the extended SDR-type and related proteins. These FRs act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites; they have the characteristic active site triad of the SDRs (though not the upstream active site Asn) and a NADP-binding motif that is very similar to the typical extended SDR motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293

>gnl|CDD|178256 PLN02650, PLN02650, dihydroflavonol-4-reductase

 Score =  356 bits (916), Expect = e-123
 Identities = 159/336 (47%), Positives = 216/336 (64%), Gaps = 16/336 (4%)

Query: 1   MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGAS 60
           M   K  VCVTG +GFI SWL+MRLL+ GY+V  TVR   DP   N K +  L +LPGA+
Sbjct: 1   MGSQKETVCVTGASGFIGSWLVMRLLERGYTVRATVR---DPA--NVKKVKHLLDLPGAT 55

Query: 61  ERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCL 120
            RL ++ ADL+    FD AI GCTGV HVATP+DFE K+PE  + +  +NG L I+K+C 
Sbjct: 56  TRLTLWKADLAVEGSFDDAIRGCTGVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACA 115

Query: 121 KSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAAL 180
           K+ TV+R+V+TSS   V   +    + DE  WSD+D+ R+    G  Y +SKTL E+AA 
Sbjct: 116 KAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKKMTGWMYFVSKTLAEKAAW 175

Query: 181 EFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVA 240
           ++A E+GLD +++IP++VVGPFI      S+ ++L+LI GN   Y  +     VH+DD+ 
Sbjct: 176 KYAAENGLDFISIIPTLVVGPFISTSMPPSLITALSLITGNEAHYSIIKQGQFVHLDDLC 235

Query: 241 RAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTV-----DSLAEIEGYRA 295
            AHIFL E+P A+GRYICSSH  TI ++A+ L  KYPEY IP       + L  +E    
Sbjct: 236 NAHIFLFEHPAAEGRYICSSHDATIHDLAKMLREKYPEYNIPARFPGIDEDLKSVE---- 291

Query: 296 PGSSSKKLLDAGFRYNYGIDEMFDEAIQCCKEKGYL 331
              SSKKL D GF + Y +++MFD AI+ C+EKG +
Sbjct: 292 --FSSKKLTDLGFTFKYSLEDMFDGAIETCREKGLI 325

Length = 351

>gnl|CDD|215100 PLN00198, PLN00198, anthocyanidin reductase; Provisional

 Score =  294 bits (755), Expect = 8e-99
 Identities = 146/343 (42%), Positives = 208/343 (60%), Gaps = 29/343 (8%)

Query: 4   GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERL 63
           GK   CV GGTGF+AS LI  LL  GY+V TTVR   DPE  N K ++ L+ L    + L
Sbjct: 8   GKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVR---DPE--NQKKIAHLRALQELGD-L 61

Query: 64  RIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSG 123
           +IF ADL+  + F+A IAGC  V HVATPV+F  ++PE  + + AI G   +LK+C K+ 
Sbjct: 62  KIFGADLTDEESFEAPIAGCDLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAK 121

Query: 124 TVKRVVYTSSNAAVFYNDKDVD--MMDETFWSDVDYIR--KLDSWGKSYAISKTLTERAA 179
           +VKRV+ TSS AAV  N       +M+E  W+DV+++   K  +WG  Y  SKTL E+AA
Sbjct: 122 SVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKPPTWG--YPASKTLAEKAA 179

Query: 180 LEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLN--------- 230
            +FAEE+ +DL+T+IP+++ GP +      S+  +++LI GN     FL+N         
Sbjct: 180 WKFAEENNIDLITVIPTLMAGPSLTSDIPSSLSLAMSLITGNE----FLINGLKGMQMLS 235

Query: 231 --TSMVHVDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLA 288
              S+ HV+DV RAHIFL E   A GRYIC +   ++ E+A+FL  +YP+Y +PT     
Sbjct: 236 GSISITHVEDVCRAHIFLAEKESASGRYICCAANTSVPELAKFLIKRYPQYQVPT--DFG 293

Query: 289 EIEGYRAPGSSSKKLLDAGFRYNYGIDEMFDEAIQCCKEKGYL 331
           +         SS+KL+  GF + YGI+E++D+ ++  K KG L
Sbjct: 294 DFPSKAKLIISSEKLISEGFSFEYGIEEIYDQTVEYFKAKGLL 336

Length = 338

>gnl|CDD|187536 cd05193, AR_like_SDR_e, aldehyde reductase, flavonoid reductase, and related proteins, extended (e) SDRs

 Score =  268 bits (687), Expect = 3e-89
 Identities = 113/283 (39%), Positives = 156/283 (55%), Gaps = 15/283 (5%)

Query: 8   VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH 67
           V VTG +GF+AS ++ +LL+ GY V  TVR   DP     K ++ L +L     RL +  
Sbjct: 1   VLVTGASGFVASHVVEQLLERGYKVRATVR---DPS--KVKKVNHLLDLDAKPGRLELAV 55

Query: 68  ADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKR 127
           ADL+    FD  I GC GV HVATPV F  K+P EVI   AI GTL  LK+   + +VKR
Sbjct: 56  ADLTDEQSFDEVIKGCAGVFHVATPVSFSSKDPNEVIKP-AIGGTLNALKAAAAAKSVKR 114

Query: 128 VVYTSSNAAVFYNDKDVDMM--DETFWSDVDYIR--KLDSWGKSYAISKTLTERAALEFA 183
            V TSS  +V     +V+ +  DE  W+  ++    K  +W   YA SKTL E+AA +FA
Sbjct: 115 FVLTSSAGSVLIPKPNVEGIVLDEKSWNLEEFDSDPKKSAWV--YAASKTLAEKAAWKFA 172

Query: 184 EEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEY-GFLLNTS--MVHVDDVA 240
           +E+ +DL+T+IP++ +G     +   S   +++LI GN        L      VHV D+ 
Sbjct: 173 DENNIDLITVIPTLTIGTIFDSETPSSSGWAMSLITGNEGVSPALALIPPGYYVHVVDIC 232

Query: 241 RAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPT 283
            AHI  LE P A+GRYIC++       + + L  KYP Y  PT
Sbjct: 233 LAHIGCLELPIARGRYICTAGNFDWNTLLKTLRKKYPSYTFPT 275

This subgroup contains aldehyde reductase and flavonoid reductase of the extended SDR-type and related proteins. Proteins in this subgroup have a complete SDR-type active site tetrad and a close match to the canonical extended SDR NADP-binding motif. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 295

>gnl|CDD|178484 PLN02896, PLN02896, cinnamyl-alcohol dehydrogenase

 Score =  265 bits (680), Expect = 2e-87
 Identities = 140/348 (40%), Positives = 195/348 (56%), Gaps = 27/348 (7%)

Query: 2   EEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASE 61
           E   G  CVTG TG+I SWL+  LL  GY+V  T+R   DP     K L  L       +
Sbjct: 7   ESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLR---DPA----KSLHLLSKWKEG-D 58

Query: 62  RLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFE----DKEPEEVITQR----AINGTL 113
           RLR+F ADL     FD A+ GC GV HVA  ++F+        EE +  +    AI GTL
Sbjct: 59  RLRLFRADLQEEGSFDEAVKGCDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTL 118

Query: 114 GILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDM---MDETFWSDVDYIRKLDSWGKSYAI 170
            +LKSCLKS TVKRVV+TSS + +   D +      +DET  + +D++    + G  Y +
Sbjct: 119 NVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPIDHVWNTKASGWVYVL 178

Query: 171 SKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFL-- 228
           SK LTE AA ++A+E+G+DLV++I + V GPF+ P    S++  L+ I G+ + +  L  
Sbjct: 179 SKLLTEEAAFKYAKENGIDLVSVITTTVAGPFLTPSVPSSIQVLLSPITGDSKLFSILSA 238

Query: 229 LNTSM-----VHVDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPT 283
           +N+ M     VH++D+  AHIFL+E   A+GRYIC   +  + E+   LS +YP      
Sbjct: 239 VNSRMGSIALVHIEDICDAHIFLMEQTKAEGRYICCVDSYDMSELINHLSKEYPCS-NIQ 297

Query: 284 VDSLAEIEGYRAPGSSSKKLLDAGFRYNYGIDEMFDEAIQCCKEKGYL 331
           V    E  G      SSKKL D GF Y YGI+E+ D+ I CC + G+L
Sbjct: 298 VRLDEEKRGSIPSEISSKKLRDLGFEYKYGIEEIIDQTIDCCVDHGFL 345

Length = 353

>gnl|CDD|178268 PLN02662, PLN02662, cinnamyl-alcohol dehydrogenase family protein

 Score =  246 bits (629), Expect = 5e-80
 Identities = 132/338 (39%), Positives = 182/338 (53%), Gaps = 28/338 (8%)

Query: 3   EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASER 62
           EGK  VCVTG +G+IASWL+  LL  GY+V  TVR   DP     K    L  L GA ER
Sbjct: 3   EGK-VVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDP-----KKTEHLLALDGAKER 56

Query: 63  LRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKS 122
           L +F A+L     FD+ + GC GV H A+P   +  +P+  +   A+ GTL +L+SC K 
Sbjct: 57  LHLFKANLLEEGSFDSVVDGCEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKV 116

Query: 123 GTVKRVVYTSSNAAVFYNDK----DVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERA 178
            +VKRVV TSS AAV YN K    DV ++DET++SD  +  +   W   Y +SKTL E A
Sbjct: 117 PSVKRVVVTSSMAAVAYNGKPLTPDV-VVDETWFSDPAFCEESKLW---YVLSKTLAEEA 172

Query: 179 ALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR----EEYGFLLNTSMV 234
           A +FA+E+G+D+VT+ P+MV+GP + P    S  + L LI G +      Y +      V
Sbjct: 173 AWKFAKENGIDMVTINPAMVIGPLLQPTLNTSAEAILNLINGAQTFPNASYRW------V 226

Query: 235 HVDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYR 294
            V DVA AHI   E P A GRY      +   E+ + L   YP   +P  +  A+ + Y 
Sbjct: 227 DVRDVANAHIQAFEIPSASGRYCLVERVVHYSEVVKILHELYPTLQLP--EKCADDKPYV 284

Query: 295 APGSSSK-KLLDAGFRYNYGIDEMFDEAIQCCKEKGYL 331
                SK K    G  +   ++    + ++  KEKG+L
Sbjct: 285 PTYQVSKEKAKSLGIEFI-PLEVSLKDTVESLKEKGFL 321

Length = 322

>gnl|CDD|187538 cd05227, AR_SDR_e, aldehyde reductase, extended (e) SDRs

 Score =  228 bits (584), Expect = 2e-73
 Identities = 108/311 (34%), Positives = 160/311 (51%), Gaps = 24/311 (7%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
            V VTG TGFIAS ++ +LL  GY V  TVRS      +++K  + LK   G ++RL   
Sbjct: 1   LVLVTGATGFIASHIVEQLLKAGYKVRGTVRSLS----KSAKLKALLKA-AGYNDRLEFV 55

Query: 67  HADL-SHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTV 125
             D  + P+ +D A+ G   V+HVA+P  F   + E+ +   A+ GTL +L++   +G+V
Sbjct: 56  IVDDLTAPNAWDEALKGVDYVIHVASPFPFTGPDAEDDVIDPAVEGTLNVLEAAKAAGSV 115

Query: 126 KRVVYTSSNAAVFY---NDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEF 182
           KRVV TSS AAV      D    +  E  W+D+   +        Y  SKTL E+AA EF
Sbjct: 116 KRVVLTSSVAAVGDPTAEDPGK-VFTEEDWNDLTISKSNGLDA--YIASKTLAEKAAWEF 172

Query: 183 AEEH--GLDLVTLIPSMVVGPFICPKFAGSVRSSLALI--LGNREEYGFL--LNTSMVHV 236
            +E+    +L+T+ P  V+GP      A  + SS  LI  L + +       L    V V
Sbjct: 173 VKENKPKFELITINPGYVLGP---SLLADELNSSNELINKLLDGKLPAIPPNLPFGYVDV 229

Query: 237 DDVARAHIFLLEYPDAKG-RYICSSHTLTIQEMAEFLSAKYPEY--PIPTVDSLAEIEGY 293
            DVA AH+  LE P+A G R+I S+   + QE+A+ L  ++P+   P P  + L      
Sbjct: 230 RDVADAHVRALESPEAAGQRFIVSAGPFSFQEIADLLREEFPQLTAPFPAPNPLMLSILV 289

Query: 294 RAPGSSSKKLL 304
           +     S++LL
Sbjct: 290 KFDNRKSEELL 300

This subgroup contains aldehyde reductase of the extended SDR-type and related proteins. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 301

>gnl|CDD|178567 PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase family protein

 Score =  198 bits (504), Expect = 2e-61
 Identities = 116/297 (39%), Positives = 163/297 (54%), Gaps = 21/297 (7%)

Query: 1   MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGAS 60
           M  G   VCVTG +G+IASW++  LL  GY+V  TVR   D   R  K    L  L GA 
Sbjct: 1   MNGGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVR---DLTDR--KKTEHLLALDGAK 55

Query: 61  ERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCL 120
           ERL++F ADL     F+ AI GC  V H A+PV F  K+P+  +   A+ GT+ +L +C 
Sbjct: 56  ERLKLFKADLLEESSFEQAIEGCDAVFHTASPVFFTVKDPQTELIDPALKGTINVLNTCK 115

Query: 121 KSGTVKRVVYTSSNAAVFYNDKDV---DMMDETFWSDVDYIRKLDSWGKSYAISKTLTER 177
           ++ +VKRV+ TSS AAV +    +   D++DETF+SD    R+  +W   Y +SK L E 
Sbjct: 116 ETPSVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRETKNW---YPLSKILAEN 172

Query: 178 AALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILG----NREEYGFLLNTSM 233
           AA EFA+++G+D+V L P  + GP + P    SV   +  I G    N   Y F      
Sbjct: 173 AAWEFAKDNGIDMVVLNPGFICGPLLQPTLNFSVELIVDFINGKNLFNNRFYRF------ 226

Query: 234 VHVDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEI 290
           V V DVA AHI  LE P A GRYI     +++ ++ + L   +P+  I   +  +E+
Sbjct: 227 VDVRDVALAHIKALETPSANGRYIIDGPIMSVNDIIDILRELFPDLCIADTNEESEM 283

Length = 322

>gnl|CDD|178569 PLN02989, PLN02989, cinnamyl-alcohol dehydrogenase family protein

 Score =  186 bits (473), Expect = 1e-56
 Identities = 113/288 (39%), Positives = 162/288 (56%), Gaps = 20/288 (6%)

Query: 1   MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGAS 60
           M +G   VCVTG +G+IASW++  LL  GY++  TVR   DP+ R   D   L  L GA 
Sbjct: 1   MADGGKVVCVTGASGYIASWIVKLLLFRGYTINATVR---DPKDRKKTD--HLLALDGAK 55

Query: 61  ERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDK-EPEEVITQRAINGTLGILKSC 119
           ERL++F ADL     F+ AI GC  V H A+PV    K +P+  +   A+NGT+ +L++C
Sbjct: 56  ERLKLFKADLLDEGSFELAIDGCETVFHTASPVAITVKTDPQVELINPAVNGTINVLRTC 115

Query: 120 LKSGTVKRVVYTSSNAAVFYNDKDV---DMMDETFWSDVDYIRKLDSWGKSYAISKTLTE 176
            K  +VKRV+ TSS AAV   +  +   D++DETF+++  +  +   W   Y +SKTL E
Sbjct: 116 TKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEERKQW---YVLSKTLAE 172

Query: 177 RAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTS---M 233
            AA  FA+++ +DL+ L P +V GP + P    SV   + L+ G         NT+    
Sbjct: 173 DAAWRFAKDNEIDLIVLNPGLVTGPILQPTLNFSVAVIVELMKGKNP-----FNTTHHRF 227

Query: 234 VHVDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPI 281
           V V DVA AH+  LE P A GRYI     +TI+++   L   +P+  I
Sbjct: 228 VDVRDVALAHVKALETPSANGRYIIDGPVVTIKDIENVLREFFPDLCI 275

Length = 325

>gnl|CDD|177862 PLN02214, PLN02214, cinnamoyl-CoA reductase

 Score =  185 bits (470), Expect = 4e-56
 Identities = 118/327 (36%), Positives = 183/327 (55%), Gaps = 20/327 (6%)

Query: 8   VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH 67
           VCVTG  G+IASW++  LL+ GY+V  TVR+  DP++      + L+ L G  ERL +  
Sbjct: 13  VCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKN------THLRELEGGKERLILCK 66

Query: 68  ADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKR 127
           ADL   +   AAI GC GV H A+PV     +PE+++ + A+NG   ++ +  ++  VKR
Sbjct: 67  ADLQDYEALKAAIDGCDGVFHTASPVT---DDPEQMV-EPAVNGAKFVINAAAEA-KVKR 121

Query: 128 VVYTSSNAAVFYNDKDVD---MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAE 184
           VV TSS  AV Y D + D   ++DE+ WSD+D+ +   +W   Y   K + E+AA E A+
Sbjct: 122 VVITSSIGAV-YMDPNRDPEAVVDESCWSDLDFCKNTKNW---YCYGKMVAEQAAWETAK 177

Query: 185 EHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHI 244
           E G+DLV L P +V+GP + P    S+   L  + G+ + Y  L   + V V DVA AH+
Sbjct: 178 EKGVDLVVLNPVLVLGPPLQPTINASLYHVLKYLTGSAKTYANL-TQAYVDVRDVALAHV 236

Query: 245 FLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSSKKLL 304
            + E P A GRY+ +       E+ E L+  +PEYP+PT     +    +    +++K+ 
Sbjct: 237 LVYEAPSASGRYLLAESARHRGEVVEILAKLFPEYPLPTKCKDEKNPRAKPYKFTNQKIK 296

Query: 305 DAGFRYNYGIDEMFDEAIQCCKEKGYL 331
           D G  +      ++D  ++  +EKG+L
Sbjct: 297 DLGLEFTSTKQSLYD-TVKSLQEKGHL 322

Length = 342

>gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

 Score =  148 bits (375), Expect = 2e-42
 Identities = 83/329 (25%), Positives = 122/329 (37%), Gaps = 36/329 (10%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
           R+ VTGG GFI S L+ RLL  G+ V    R   D        + F              
Sbjct: 2   RILVTGGAGFIGSHLVERLLAAGHDVRGLDRL-RDGLDPLLSGVEF-------------V 47

Query: 67  HADLSHPDGFDAAIAGC-TGVLHVATPVDFEDKEPEEVITQRAIN--GTLGILKSCLKSG 123
             DL+  D  D    G    V+H+A      D    +      +N  GTL +L++   +G
Sbjct: 48  VLDLTDRDLVDELAKGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAG 107

Query: 124 TVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFA 183
            VKR V+ SS + V Y D     +DE                  Y +SK   E+    +A
Sbjct: 108 -VKRFVFASSVSVV-YGDPPPLPIDED--------LGPPRPLNPYGVSKLAAEQLLRAYA 157

Query: 184 EEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNT-----SMVHVDD 238
             +GL +V L P  V GP   P  +  V S+    L   E    +          V+VDD
Sbjct: 158 RLYGLPVVILRPFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDD 217

Query: 239 VARAHIFLLEYPDAKGRYICSSHT-LTIQEMAEFLSAKY---PEYPIPTVDSLAEIEGYR 294
           VA A +  LE PD     I S    +T++E+AE ++          +             
Sbjct: 218 VADALLLALENPDGGVFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGRRGDLREG 277

Query: 295 APGSSSKKLLDAGFRYNYGIDEMFDEAIQ 323
                SK     G+     ++E   + ++
Sbjct: 278 KLLDISKARAALGWEPKVSLEEGLADTLE 306

Length = 314

>gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs

 Score =  138 bits (350), Expect = 2e-38
 Identities = 90/284 (31%), Positives = 118/284 (41%), Gaps = 44/284 (15%)

Query: 10  VTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHAD 69
           VTG TGF+ S L+  LL  GY V   VRS          D   L  LP     + +   D
Sbjct: 3   VTGATGFLGSNLVRALLAQGYRVRALVRS--------GSDAVLLDGLP-----VEVVEGD 49

Query: 70  LSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAIN--GTLGILKSCLKSGTVKR 127
           L+      AA+ GC  V H+A       K+ +E       N  GT  +L + L++G V+R
Sbjct: 50  LTDAASLAAAMKGCDRVFHLAAFTSLWAKDRKE---LYRTNVEGTRNVLDAALEAG-VRR 105

Query: 128 VVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHG 187
           VV+TSS AA+         +DET   +             Y  SK L E   LE A E G
Sbjct: 106 VVHTSSIAALGGPPDGR--IDETTPWNERPFPND------YYRSKLLAELEVLEAAAE-G 156

Query: 188 LDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLL-----NTSMVHVDDVARA 242
           LD+V + PS V GP       G    +   +       G L       TS V V DVA  
Sbjct: 157 LDVVIVNPSAVFGP-------GDEGPTSTGLDVLDYLNGKLPAYPPGGTSFVDVRDVAEG 209

Query: 243 HIFLLEYPDAKGRYICSSHTLTIQEMAEFLSA----KYPEYPIP 282
           HI  +E      RYI     L+ +++ E L+     K P   IP
Sbjct: 210 HIAAMEKGRRGERYILGGENLSFKQLFETLAEITGVKPPRRTIP 253

This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318

>gnl|CDD|178195 PLN02583, PLN02583, cinnamoyl-CoA reductase

 Score =  125 bits (316), Expect = 1e-33
 Identities = 89/320 (27%), Positives = 151/320 (47%), Gaps = 49/320 (15%)

Query: 1   MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGAS 60
            +E    VCV   +G++  WL+ RLL  GY+V   V+   + E    K++  L       
Sbjct: 2   FDESSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQK--NGETEIEKEIRGLSC---EE 56

Query: 61  ERLRIFHADLSHPDGFD-----AAIAGCTGVLHVATPVDFEDKEPE---EVITQRAINGT 112
           ERL++F  D       D      A+ GC+G+     P        E   +V  + A N  
Sbjct: 57  ERLKVFDVDP-----LDYHSILDALKGCSGLFCCFDPPSDYPSYDEKMVDVEVRAAHN-- 109

Query: 113 LGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDM---MDETFWSDVDYIRKLDSWGKSYA 169
             +L++C ++ T+++VV+TSS  AV + D ++     +DE  WSD ++ RK   W   +A
Sbjct: 110 --VLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNFCRKFKLW---HA 164

Query: 170 ISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEY--GF 227
           ++KTL+E+ A   A + G+++V++   +++GP        S+      + G  + Y  G 
Sbjct: 165 LAKTLSEKTAWALAMDRGVNMVSINAGLLMGP--------SLTQHNPYLKGAAQMYENGV 216

Query: 228 LLNTSMVHVDDVARAHIFLLEYPDAKGRYICSSHTLTIQE----MAEFLSAKYPEYPIPT 283
           L+    V V+ +  AHI   E   + GRY+C +H +  +E    +A+ LS   P  P   
Sbjct: 217 LV---TVDVNFLVDAHIRAFEDVSSYGRYLCFNHIVNTEEDAVKLAQMLSPLIPSPPPYE 273

Query: 284 VDSLAEIEGYRAPGSSSKKL 303
           +    E+   R     +KKL
Sbjct: 274 MQGS-EVYQQRI---RNKKL 289

Length = 297

>gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase

 Score =  119 bits (300), Expect = 4e-31
 Identities = 105/296 (35%), Positives = 139/296 (46%), Gaps = 49/296 (16%)

Query: 6   GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRI 65
            +V VTG TGF+ S ++  LL+ G  V   VR   D   RN      L+ L        I
Sbjct: 1   MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDR--RN------LEGLDV-----EI 47

Query: 66  FHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAIN--GTLGILKSCLKSG 123
              DL  P     A+AGC  + HVA        +PEE+    A N  GT  +L++ L++G
Sbjct: 48  VEGDLRDPASLRKAVAGCRALFHVAADYRLWAPDPEEM---YAANVEGTRNLLRAALEAG 104

Query: 124 TVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFA 183
            V+RVVYTSS A +     D    DET  S +D     D  G  Y  SK L E+AALE A
Sbjct: 105 -VERVVYTSSVATLGVR-GDGTPADETTPSSLD-----DMIG-HYKRSKFLAEQAALEMA 156

Query: 184 EEHGLDLVTLIPSMVVGPF-ICPKFAGSVRSSLALILGNREEYGFLLNT--SMVHVDDVA 240
            E GL +V + PS  +GP  I P   G  R  +  + G    Y   ++T  ++VHVDDVA
Sbjct: 157 AEKGLPVVIVNPSTPIGPRDIKPTPTG--RIIVDFLNGKMPAY---VDTGLNLVHVDDVA 211

Query: 241 RAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAP 296
             H+  LE      RYI     LT++++               +D LAEI G  AP
Sbjct: 212 EGHLLALERGRIGERYILGGENLTLKQI---------------LDKLAEITGRPAP 252

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species. Length = 328

>gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family

 Score =  110 bits (276), Expect = 1e-28
 Identities = 80/259 (30%), Positives = 114/259 (44%), Gaps = 39/259 (15%)

Query: 8   VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH 67
           + VTGGTGFI S L+ RLL  GY V    R       R S+           + R+R   
Sbjct: 1   ILVTGGTGFIGSHLVRRLLQEGYEVIVLGRR------RRSE--------SLNTGRIRFHE 46

Query: 68  ADLSHPDGFDAAIAGC--TGVLHVA--TPVDFEDKEPEEVITQRAINGTLGILKSCLKSG 123
            DL+ PD  +  +A      V+H+A  + V    ++P + I +  + GTL +L++  ++G
Sbjct: 47  GDLTDPDALERLLAEVQPDAVIHLAAQSGVGASFEDPADFI-RANVLGTLRLLEAARRAG 105

Query: 124 TVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFA 183
            VKR V+ SS + V Y D     + E        +  L      YA +K   ER    +A
Sbjct: 106 -VKRFVFASS-SEV-YGDVADPPITED-----TPLGPLSP----YAAAKLAAERLVEAYA 153

Query: 184 EEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLA-LILGNREEYGFLLNTSM-----VHVD 237
             +GL  V L    V GP     F   V  +L   IL  +     LL         ++VD
Sbjct: 154 RAYGLRAVILRLFNVYGPGNPDPFVTHVIPALIRRILEGKPIL--LLGDGTQRRDFLYVD 211

Query: 238 DVARAHIFLLEYPDAKGRY 256
           DVARA +  LE+PD    Y
Sbjct: 212 DVARAILLALEHPDGGEIY 230

This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233

>gnl|CDD|215370 PLN02686, PLN02686, cinnamoyl-CoA reductase

 Score =  112 bits (282), Expect = 2e-28
 Identities = 88/295 (29%), Positives = 135/295 (45%), Gaps = 55/295 (18%)

Query: 8   VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH 67
           VCVTGG  F+   ++ RLL HGYSV   V ++        +D   L+ +    E  R   
Sbjct: 56  VCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQ--------EDKEKLREMEMFGEMGRSND 107

Query: 68  ------ADLSHPDGFDAAIAGCTGVLHVATPVD-------------FEDKEPEEVITQRA 108
                 A+L+ P+    A  GC GV H +  VD              E K  E VI    
Sbjct: 108 GIWTVMANLTEPESLHEAFDGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVI---- 163

Query: 109 INGTLGILKSCLKSGTVKRVVYTSSNAAVFYND---KDVD-MMDETFWSDVDYIRKLDSW 164
                   ++C+++ +V++ V+TSS  A  +      D+  ++DE  WSD  + R    W
Sbjct: 164 --------EACVRTESVRKCVFTSSLLACVWRQNYPHDLPPVIDEESWSDESFCRDNKLW 215

Query: 165 GKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREE 224
              YA+ K   E+AA   A   GL L T+ P++V GP     F  +  +++A + G +E 
Sbjct: 216 ---YALGKLKAEKAAWRAARGKGLKLATICPALVTGPGF---FRRNSTATIAYLKGAQEM 269

Query: 225 YG-FLLNTSMVHVDDVARAHIFLLEYPDAK---GRYICSSHTLTIQEMAEFLSAK 275
               LL T    V+ +A AH+ + E    K   GRYIC  H ++ ++ AE L+ +
Sbjct: 270 LADGLLAT--ADVERLAEAHVCVYEAMGNKTAFGRYICFDHVVSREDEAEELARQ 322

Length = 367

>gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs

 Score = 96.6 bits (241), Expect = 6e-24
 Identities = 67/251 (26%), Positives = 97/251 (38%), Gaps = 59/251 (23%)

Query: 8   VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH 67
           + VTGG GFI S L+ RLL+ G+ V    R ++                        + H
Sbjct: 1   ILVTGGAGFIGSHLVRRLLERGHEVVVIDRLDV------------------------VVH 36

Query: 68  ADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKR 127
                     AA+ G          V      P+E   +  + GTL +L++  K+G VKR
Sbjct: 37  L---------AALVG----------VPASWDNPDEDF-ETNVVGTLNLLEAARKAG-VKR 75

Query: 128 VVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHG 187
            VY SS +   Y   +    +E          +  S    Y +SK   E     + E +G
Sbjct: 76  FVYASSASV--YGSPEGLPEEEE------TPPRPLS---PYGVSKLAAEHLLRSYGESYG 124

Query: 188 LDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREE--YGFLLNT-SMVHVDDVARAHI 244
           L +V L  + V GP   P+  G V   +   L  +    +G    T   +HVDDV RA +
Sbjct: 125 LPVVILRLANVYGPGQRPRLDGVVNDFIRRALEGKPLTVFGGGNQTRDFIHVDDVVRAIL 184

Query: 245 FLLEYPDAKGR 255
             LE P   G 
Sbjct: 185 HALENPLEGGG 195

Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200

>gnl|CDD|187566 cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs

 Score = 89.6 bits (223), Expect = 2e-20
 Identities = 86/329 (26%), Positives = 124/329 (37%), Gaps = 53/329 (16%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
           RV VTGG GFI S L+ RLL+ G+ V   V   L    +         NLP     ++  
Sbjct: 1   RVLVTGGAGFIGSHLVERLLERGHEV--IVLDNLSTGKKE--------NLPEVKPNVKFI 50

Query: 67  HADLSHPDGFDAAIAGCTGVLHVAT----PVDFEDKEPEEVITQRAINGTLGILKSCLKS 122
             D+   +  + A  G   V H A     P   ED   +  +    + GTL +L++  K+
Sbjct: 51  EGDIRDDELVEFAFEGVDYVFHQAAQASVPRSIEDPIKDHEVN---VLGTLNLLEAARKA 107

Query: 123 GTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEF 182
           G VKR VY SS++   Y D      DE           L      YA+SK   E     F
Sbjct: 108 G-VKRFVYASSSSV--YGDPPYLPKDED-----HPPNPL----SPYAVSKYAGELYCQVF 155

Query: 183 AEEHGLDLVTLIPSMVVGP---------FICPKFAGSVRSSLALILGNREEYG--FLLNT 231
           A  +GL  V+L    V GP          + P F           +    E    F    
Sbjct: 156 ARLYGLPTVSLRYFNVYGPRQDPNGGYAAVIPIFIERALKGEPPTIYGDGEQTRDF---- 211

Query: 232 SMVHVDDVARAHIFLLEYPDAKGRY-ICSSHTLTIQEMAEFLS---AKYPEYPIPTVDSL 287
              +V+DV  A++           Y I +    ++ E+AE +     K  E P+      
Sbjct: 212 --TYVEDVVEANLLAATAGAGGEVYNIGTGKRTSVNELAELIREILGKELE-PVYAPPRP 268

Query: 288 AEIEGYRAPGSSSKKLLDAGFRYNYGIDE 316
            ++    A  S +KKLL  G+      +E
Sbjct: 269 GDVRHSLADISKAKKLL--GWEPKVSFEE 295

This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 304

>gnl|CDD|187543 cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs

 Score = 83.9 bits (208), Expect = 2e-18
 Identities = 68/273 (24%), Positives = 102/273 (37%), Gaps = 49/273 (17%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
           +V VTG  GFI   L+ +LL  G  V   VR+                N   +       
Sbjct: 1   KVLVTGANGFIGRALVDKLLSRGEEVRIAVRNAE--------------NAEPSVVL---- 42

Query: 67  HADLSHPDGFDAAIAGCTGVLHVATPV-DFEDKEPEEVITQRAIN--GTLGILKSCLKSG 123
            A+L   D F     G   V+H+A  V    D+  + +   R +N   T  + ++  + G
Sbjct: 43  -AELPDIDSFTDLFLGVDAVVHLAARVHVMNDQGADPLSDYRKVNTELTRRLARAAARQG 101

Query: 124 TVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFA 183
            VKR V+ SS              +    +  D           Y  SK   ERA LE  
Sbjct: 102 -VKRFVFLSSVKVNGEGTVGAPFDETDPPAPQDA----------YGRSKLEAERALLELG 150

Query: 184 EEHGLDLVTLIPSMVVGPFICPKFAGSVRSS---LALILG---NREEYGFLLNTSMVHVD 237
              G+++V L P MV GP +   FA  +R     L L  G   NR         S+V +D
Sbjct: 151 ASDGMEVVILRPPMVYGPGVRGNFARLMRLIDRGLPLPPGAVKNRR--------SLVSLD 202

Query: 238 DVARAHIFLLEYPDAKGR-YICS-SHTLTIQEM 268
           ++  A    +  P A    ++ S    ++  E+
Sbjct: 203 NLVDAIYLCISLPKAANGTFLVSDGPPVSTAEL 235

UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 303

>gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs

 Score = 79.3 bits (196), Expect = 7e-17
 Identities = 70/285 (24%), Positives = 120/285 (42%), Gaps = 43/285 (15%)

Query: 10  VTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHAD 69
           VTGGTGF+   L+ RLL++G+ V   VRSE        +    ++     ++R+R+   D
Sbjct: 3   VTGGTGFLGRHLVKRLLENGFKVLVLVRSE-----SLGEAHERIEEAGLEADRVRVLEGD 57

Query: 70  LSHPD-GFDAA-----IAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSG 123
           L+ P+ G  AA           V+H A   DF+   P E   +  I+GT  +L+   +  
Sbjct: 58  LTQPNLGLSAAASRELAGKVDHVIHCAASYDFQ--APNEDAWRTNIDGTEHVLELAARLD 115

Query: 124 TVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFA 183
             +R  Y S+ A V       +       ++++  +   +    Y  SK   E+     A
Sbjct: 116 I-QRFHYVST-AYV-----AGNREGNIRETELNPGQNFKNP---YEQSKAEAEQLVRAAA 165

Query: 184 EEHGLDLVTLIPSMVVGPFIC---PKFAGSVRSSLAL--------ILGNREEYGFLLNTS 232
            +  + L    PS+VVG        K  G       L        + GN+         +
Sbjct: 166 TQ--IPLTVYRPSIVVGDSKTGRIEKIDGLYELLNLLAKLGRWLPMPGNKGARL-----N 218

Query: 233 MVHVDDVARAHIFLLEYPDAKGR--YICSSHTLTIQEMAEFLSAK 275
           +V VD VA A ++L + P+A G+  ++      T++E+A+   + 
Sbjct: 219 LVPVDYVADAIVYLSKKPEANGQIFHLTDPTPQTLREIADLFKSA 263

This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293

>gnl|CDD|216283 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase family

 Score = 78.5 bits (194), Expect = 1e-16
 Identities = 70/283 (24%), Positives = 109/283 (38%), Gaps = 41/283 (14%)

Query: 10  VTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHAD 69
           VTGG GF+   ++  LL  G      VR   D          F K      + +     D
Sbjct: 2   VTGGGGFLGRHIVRLLLREGE--LQEVRV-FDLRFSPELLEDFSK-----LQVITYIEGD 53

Query: 70  LSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVV 129
           ++       A+ G   V+H A  +D   K   + I +  + GT  +L +C+K+G V+ +V
Sbjct: 54  VTDKQDLRRALQGSDVVIHTAAIIDVFGKAYRDTIMKVNVKGTQNVLDACVKAG-VRVLV 112

Query: 130 YTSSNAAVFYNDKDVDMM--DETFWSDVDYIRKLDSWGKSYAISKTLTERAALE---FAE 184
           YTSS   V  N     ++  DET            +    Y  SK L E+  L+      
Sbjct: 113 YTSSMEVVGPNSYGQPIVNGDET-------TPYESTHQDPYPESKALAEKLVLKANGSTL 165

Query: 185 EHGLDLVT--LIPSMVVGP---FICPKFAGSVRSSLAL-ILGNREEYGFLLNTSMVHVDD 238
           ++G  L T  L P+ + G    F+ P     +++ LA    G++        +  V+V +
Sbjct: 166 KNGGRLYTCALRPAGIFGEGDPFLFPFLVRLLKNGLAKFRTGDKNVL-----SDRVYVGN 220

Query: 239 VARAHIFL---LEYPDAKGR-----YICSSHTLTIQEMAEFLS 273
           VA AHI     L+ P          Y  S  T       +F  
Sbjct: 221 VAWAHILAARALQDPKKASSIAGQFYFISDDT-PHNSYDDFNR 262

The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyzes the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Length = 280

>gnl|CDD|187567 cd05257, Arna_like_SDR_e, Arna decarboxylase_like, extended (e) SDRs

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 72/280 (25%), Positives = 107/280 (38%), Gaps = 34/280 (12%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGAS-ERLRI 65
            V VTG  GFI S L  RLL  G+ V       LD    NS +   L  L  A  +R   
Sbjct: 1   NVLVTGADGFIGSHLTERLLREGHEVRA-----LD--IYNSFNSWGL--LDNAVHDRFHF 51

Query: 66  FHADLSHPDGFDAAIAGCTGVLHVATP--VDFEDKEPEEVITQRAINGTLGILKSCLKSG 123
              D+      +  +  C  V H+A    + +    P   + +  + GTL +L++     
Sbjct: 52  ISGDVRDASEVEYLVKKCDVVFHLAALIAIPYSYTAPLSYV-ETNVFGTLNVLEAACVLY 110

Query: 124 TVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFA 183
             KRVV+TS++    Y       +DE     + YI K  S    Y+ SK   +R A  + 
Sbjct: 111 -RKRVVHTSTSEV--YGTAQDVPIDED--HPLLYINKPRS---PYSASKQGADRLAYSYG 162

Query: 184 EEHGLDLVTLIPSMVVGPFICP-KFAGSVRSSLAL-----ILGNREEYGFLLNTSMVHVD 237
              GL +  + P    GP         ++ S  A+      LG+              V 
Sbjct: 163 RSFGLPVTIIRPFNTYGPRQSARAVIPTIISQRAIGQRLINLGDGSPT-----RDFNFVK 217

Query: 238 DVARAHIFLLEYPDAKGRYI--CSSHTLTIQEMAEFLSAK 275
           D AR  I +L+  +A G  I   S   ++I   A  L  +
Sbjct: 218 DTARGFIDILDAIEAVGEIINNGSGEEISIGNPAVELIVE 257

Decarboxylase domain of ArnA. ArnA, is an enzyme involved in the modification of outer membrane protein lipid A of gram-negative bacteria. It is a bifunctional enzyme that catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid and N-10-formyltetrahydrofolate-dependent formylation of UDP-4-amino-4-deoxy-l-arabinose; its NAD-dependent decaboxylating activity is in the C-terminal 360 residues. This subgroup belongs to the extended SDR family, however the NAD binding motif is not a perfect match and the upstream Asn of the canonical active site tetrad is not conserved. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316

>gnl|CDD|187579 cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs

 Score = 71.9 bits (177), Expect = 2e-14
 Identities = 65/295 (22%), Positives = 104/295 (35%), Gaps = 75/295 (25%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
            V V G TGFI  +++ RL   G  V    R E       ++ L  + +L      +   
Sbjct: 2   VVTVFGATGFIGRYVVNRLAKRGSQVIVPYRCE-----AYARRLLVMGDLGQ----VLFV 52

Query: 67  HADLSHPDGFDAAIAG------CTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCL 120
             DL   +    A+ G        G L+      FED           + G   + K+  
Sbjct: 53  EFDLRDDESIRKALEGSDVVINLVGRLYETKNFSFEDVH---------VEGPERLAKAAK 103

Query: 121 KSGTVKRVVYTSS-NAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAA 179
           ++G V+R+++ S+  A       D +       S   Y+R           SK   E A 
Sbjct: 104 EAG-VERLIHISALGA-------DAN-------SPSKYLR-----------SKAEGEEAV 137

Query: 180 LEFAEEHGLDLVTLIPSMVVGP---FICPKFAGSVRSSLALILGNREEYGFLLNTSM--- 233
            E   E       + PS+V G    F+  +FA  + + L                +    
Sbjct: 138 REAFPEA----TIVRPSVVFGREDRFLN-RFA-KLLAFLPFPP------LIGGGQTKFQP 185

Query: 234 VHVDDVARAHIFLLEYPDAKGR--YICSSHTLTIQEMAEFLSA----KYPEYPIP 282
           V+V DVA A    L+ P+ +G+   +      T+ E+ E L      K    P+P
Sbjct: 186 VYVGDVAEAIARALKDPETEGKTYELVGPKVYTLAELVELLRRLGGRKRRVLPLP 240

This subgroup of extended SDR-like proteins are atypical SDRs. They have a glycine-rich NAD(P)-binding motif similar to the typical SDRs, GXXGXXG, and have the YXXXK active site motif (though not the other residues of the SDR tetrad). Members identified include NDUFA9 (mitochondrial) and putative nucleoside-diphosphate-sugar epimerase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 273

>gnl|CDD|187552 cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs

 Score = 72.1 bits (177), Expect = 3e-14
 Identities = 57/244 (23%), Positives = 93/244 (38%), Gaps = 34/244 (13%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
            V VTGG+GF    L+ +LL+ G    T VRS  D         +           +   
Sbjct: 1   SVLVTGGSGFFGERLVKQLLERG---GTYVRS-FD---IAPPGEALSAWQH---PNIEFL 50

Query: 67  HADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVK 126
             D++  +  + A++G   V H A  V      P ++  +  + GT  +L +C + G V+
Sbjct: 51  KGDITDRNDVEQALSGADCVFHTAAIVPLA--GPRDLYWEVNVGGTQNVLDACQRCG-VQ 107

Query: 127 RVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH 186
           + VYTSS+ +V +  +++   DET       +         YA +K + E   LE     
Sbjct: 108 KFVYTSSS-SVIFGGQNIHNGDET-------LPYPPLDSDMYAETKAIAEIIVLEANGRD 159

Query: 187 GLDLVTLIPSMVVGPFICPKFAGSVRSSLALIL------GNREEYGFLLNTSMVHVDDVA 240
            L    L P+ + GP         +       L             F       +V ++A
Sbjct: 160 DLLTCALRPAGIFGPG-DQGLVPILFEWAEKGLVKFVFGRGNNLVDF------TYVHNLA 212

Query: 241 RAHI 244
            AHI
Sbjct: 213 HAHI 216

Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 331

>gnl|CDD|187673 cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs

 Score = 71.2 bits (175), Expect = 5e-14
 Identities = 66/246 (26%), Positives = 106/246 (43%), Gaps = 37/246 (15%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
              V GG+GF+   L+ +LL  G     TV    D            +  P +S R++  
Sbjct: 1   SCLVVGGSGFLGRHLVEQLLRRG---NPTVHV-FDIRPT-------FELDPSSSGRVQFH 49

Query: 67  HADLSHPDGFDAAI--AGCTGVLHVATPVDFEDKEP-EEVITQRAINGTLGILKSCLKSG 123
             DL+ P   + A    G   V H A+P    + +   +V  Q    GT  ++++C K G
Sbjct: 50  TGDLTDPQDLEKAFNEKGPNVVFHTASPDHGSNDDLYYKVNVQ----GTRNVIEACRKCG 105

Query: 124 TVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEF- 182
            VK++VYTSS A+V +N +D+   DE+      Y  K      +Y  +K L E+  L+  
Sbjct: 106 -VKKLVYTSS-ASVVFNGQDIINGDESL----PYPDKHQD---AYNETKALAEKLVLKAN 156

Query: 183 AEEHGLDLVTLIPSMVVGP---FICPKFAGSVRSSLA-LILGNREEYGFLLNTSMVHVDD 238
             E GL    L P+ + GP    + P    + ++      +G+             +V++
Sbjct: 157 DPESGLLTCALRPAGIFGPGDRQLVPGLLKAAKNGKTKFQIGDGNNLF-----DFTYVEN 211

Query: 239 VARAHI 244
           VA AHI
Sbjct: 212 VAHAHI 217

This subgroup includes human NSDHL and related proteins. These proteins have the characteristic active site tetrad of extended SDRs, and also have a close match to their NAD(P)-binding motif. Human NSDHL is a 3beta-hydroxysteroid dehydrogenase (3 beta-HSD) which functions in the cholesterol biosynthetic pathway. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Mutations in the gene encoding NSDHL cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. This subgroup also includes an unusual bifunctional [3beta-hydroxysteroid dehydrogenase (3b-HSD)/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 335

>gnl|CDD|187671 cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD (hydroxysteroid dehydrogenase) and HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs

 Score = 69.1 bits (169), Expect = 4e-13
 Identities = 67/255 (26%), Positives = 97/255 (38%), Gaps = 46/255 (18%)

Query: 10  VTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASE------RL 63
           VTGG GF+   +I  LL+         R E   E R   D +F   L    E       +
Sbjct: 4   VTGGGGFLGQHIIRLLLE---------RKEELKEIR-VLDKAFGPELIEHFEKSQGKTYV 53

Query: 64  RIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSG 123
                D+        A  G + V+H A  VD       E + +  +NGT  +L++C+++ 
Sbjct: 54  TDIEGDIKDLSFLFRACQGVSVVIHTAAIVDVFGPPNYEELEEVNVNGTQAVLEACVQNN 113

Query: 124 TVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALE-- 181
            VKR+VYTSS      N K         ++ V+     D+    YA SK L E   L   
Sbjct: 114 -VKRLVYTSSIEVAGPNFK-----GRPIFNGVEDTPYEDTSTPPYASSKLLAENIVLNAN 167

Query: 182 -FAEEHGLDLVT--LIPSMVVG---PFI------CPKFAGSVRSSLALILGNREEYGFLL 229
               + G  LVT  L P  + G    F+           G +   +     N        
Sbjct: 168 GAPLKQGGYLVTCALRPMYIYGEGSHFLTEIFDFLLTNNGWLFPRIKGSGVN-------- 219

Query: 230 NTSMVHVDDVARAHI 244
              +V+V +VA AHI
Sbjct: 220 --PLVYVGNVAWAHI 232

This extended-SDR subgroup includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7], and related proteins. These proteins have the characteristic active site tetrad and NAD(P)-binding motif of extended SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. C(27) 3beta-HSD is a membrane-bound enzyme of the endoplasmic reticulum, it catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 354

>gnl|CDD|187575 cd05265, SDR_a1, atypical (a) SDRs, subgroup 1

 Score = 67.7 bits (166), Expect = 4e-13
 Identities = 52/254 (20%), Positives = 79/254 (31%), Gaps = 47/254 (18%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
           ++ + GGT FI   L+  LL  G+ VT          +R               E +   
Sbjct: 2   KILIIGGTRFIGKALVEELLAAGHDVTVF--------NRGRTKPDL-------PEGVEHI 46

Query: 67  HADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVK 126
             D +  D  +  + G      V   VD     P +V         L   K     G VK
Sbjct: 47  VGDRNDRDALEELLGG--EDFDVV--VDTIAYTPRQVER------ALDAFK-----GRVK 91

Query: 127 RVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH 186
           + ++ SS +   Y      + + T   + D +   D W   Y   K   E       E  
Sbjct: 92  QYIFISSASV--YLKPGRVITESTPLREPDAVGLSDPW--DYGRGKRAAEDVL---IEAA 144

Query: 187 GLDLVTLIPSMVVGPF-ICPKFAGSVRSSLA----LILGNREEYGFLLNTSMVHVDDVAR 241
                 + P  + GP     + A            L+ G+            +HV D+AR
Sbjct: 145 AFPYTIVRPPYIYGPGDYTGRLAYFFDRLARGRPILVPGDGH-----SLVQFIHVKDLAR 199

Query: 242 AHIFLLEYPDAKGR 255
           A +     P A G 
Sbjct: 200 ALLGAAGNPKAIGG 213

Atypical SDRs in this subgroup are poorly defined and have been identified putatively as isoflavones reductase, sugar dehydratase, mRNA binding protein etc. Atypical SDRs are distinct from classical SDRs. Members of this subgroup retain the canonical active site triad (though not the upstream Asn found in most SDRs) but have an unusual putative glycine-rich NAD(P)-binding motif, GGXXXXG, in the usual location. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 250

>gnl|CDD|187553 cd05242, SDR_a8, atypical (a) SDRs, subgroup 8

 Score = 68.0 bits (167), Expect = 5e-13
 Identities = 78/328 (23%), Positives = 127/328 (38%), Gaps = 65/328 (19%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
           ++ +TGGTGFI   L  RL   G+ V    R                           I 
Sbjct: 1   KIVITGGTGFIGRALTRRLTAAGHEVVVLSRRP----------------GKAEGLAEVIT 44

Query: 67  HADLSHPDGFDAAIAGCTGVLHVA-TPVD---FEDKEPEEVITQRAINGTLGILKSCLKS 122
              LS        + G   V+++A  P+    + +   +E+++ R I  T  +L   + +
Sbjct: 45  WDGLS---LGPWELPGADAVINLAGEPIACRRWTEANKKEILSSR-IEST-RVLVEAIAN 99

Query: 123 GTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKL-DSWGKSYAISKTLTERAALE 181
                 V  S++A  +Y     +++ E   S  D++ ++  +W           E+AA  
Sbjct: 100 APAPPKVLISASAVGYYGHSGDEVLTENSPSGKDFLAEVCKAW-----------EKAAQP 148

Query: 182 FAEEHGLDLVTLIPSMVVGPF--ICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDV 239
            A E G  +V L   +V+GP     PK     R  L   LG+  ++      S +H+DD+
Sbjct: 149 -ASELGTRVVILRTGVVLGPDGGALPKMLLPFRLGLGGPLGSGRQW-----MSWIHIDDL 202

Query: 240 ARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSA-----KYPE-YPIPTV-------DS 286
            R   F +E PD  G     +        AEF  A       P   P+P         + 
Sbjct: 203 VRLIEFAIENPDLSGPVNAVAPNPV--TNAEFTKALGRALHRPAGLPVPAFALKLGFGEM 260

Query: 287 LAEI--EGYRAPGSSSKKLLDAGFRYNY 312
            AE+  +G R      ++LLDAGF++ Y
Sbjct: 261 RAELLLKGQRV---LPERLLDAGFQFRY 285

This subgroup contains atypical SDRs of unknown function. Proteins in this subgroup have a glycine-rich NAD(P)-binding motif consensus that resembles that of the extended SDRs, (GXXGXXG or GGXGXXG), but lacks the characteristic active site residues of the SDRs. A Cys often replaces the usual Lys of the YXXXK active site motif, while the upstream Ser is generally present and Arg replaces the usual Asn. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 296

>gnl|CDD|187572 cd05262, SDR_a7, atypical (a) SDRs, subgroup 7

 Score = 67.8 bits (166), Expect = 6e-13
 Identities = 70/286 (24%), Positives = 107/286 (37%), Gaps = 50/286 (17%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
           +V VTG TGFI S ++  L+  G+ V    RS+       +  L       GA     + 
Sbjct: 2   KVFVTGATGFIGSAVVRELVAAGHEVVGLARSD-----AGAAKLE----AAGAQ----VH 48

Query: 67  HADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVK 126
             DL   D    A A    V+H+A   DF++      + +RAI      L+     GT K
Sbjct: 49  RGDLEDLDILRKAAAEADAVIHLAFTHDFDNFAQACEVDRRAIEALGEALR-----GTGK 103

Query: 127 RVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH 186
            ++YTS               DE      D              ++ ++E AALE AE  
Sbjct: 104 PLIYTSGIW--LLGPTGGQEEDE---EAPD--------DPPTPAARAVSEAAALELAERG 150

Query: 187 GLDLVTLIPSMVVGP----FICPKFAGSVRSSLALILG---NREEYGFLLNTSMVHVDDV 239
               V  +P +V G     F+    A +    ++  +G   NR           VH DD 
Sbjct: 151 VRASVVRLPPVVHGRGDHGFVPMLIAIAREKGVSAYVGDGKNR--------WPAVHRDDA 202

Query: 240 ARAHIFLLEYPDAKGRYICS-SHTLTIQEMAEFLSAKYPEYPIPTV 284
           AR +   LE   A   Y       + ++++AE +  +     +P V
Sbjct: 203 ARLYRLALEKGKAGSVYHAVAEEGIPVKDIAEAIGRR---LGVPVV 245

This subgroup contains atypical SDRs of unknown function. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 291

>gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein

 Score = 65.7 bits (161), Expect = 2e-12
 Identities = 65/258 (25%), Positives = 97/258 (37%), Gaps = 39/258 (15%)

Query: 10  VTGGTGFIASWLIMRLLD--HGYSVTTTVR--SELDPEHRNSKDL--SFLKNLPGASERL 63
           +TG TGF+   L+ +LL       +   VR         R  ++L    L +   A ER+
Sbjct: 1   LTGATGFLGKVLLEKLLRSTPEVKIYCLVRAKDGESALERLRQELLKYGLFDRLKALERI 60

Query: 64  RIFHADLSHPD-GFDAA----IAGCTG-VLHVATPVDFEDKEPEEVITQRAIN--GTLGI 115
                DLS P+ G        +A     ++H A  V+F   EP   +  RA N  GT  +
Sbjct: 61  IPVAGDLSEPNLGLSDEDFQELAEEVDVIIHNAATVNFV--EPYSDL--RATNVLGTREV 116

Query: 116 LKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLT 175
           L+   K        + S+  A    ++   + ++ +  D D    L      Y  SK L 
Sbjct: 117 LRLA-KQMKKLPFHHVST--AYVNGERGGLLEEKPYKLDEDEPALLGGLPNGYTQSKWLA 173

Query: 176 ERAALEFAEEHGLDLVTLIPSMVVGP----------FICPKFAGSV-RSSLALILGNREE 224
           E+   E A   GL +V   PS++ G           F      G      L  ILG+ + 
Sbjct: 174 EQLVREAAG--GLPVVIYRPSIITGESRTGWINGDDFGPRGLLGGAGLGVLPDILGDPDA 231

Query: 225 YGFLLNTSMVHVDDVARA 242
                   +V VD VA A
Sbjct: 232 -----RLDLVPVDYVANA 244

This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 245

>gnl|CDD|187574 cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase (G4E), subgroup 5, extended (e) SDRs

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 79/327 (24%), Positives = 128/327 (39%), Gaps = 51/327 (15%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
           RV + GG GFI S L+  LL+ G  V    RS    E      L  +  + G  E     
Sbjct: 1   RVLIVGGNGFIGSHLVDALLEEGPQVRVFDRSIPPYE----LPLGGVDYIKGDYENR--- 53

Query: 67  HADLSHPDGFDAAIAGCTGVLHVA---TPVDFEDKEPEEVITQRAINGTLGILKSCLKSG 123
            ADL       +A+ G   V+H+A    P         ++  Q  +  T+ +L++C  +G
Sbjct: 54  -ADLE------SALVGIDTVIHLASTTNPATSNKNPILDI--QTNVAPTVQLLEACAAAG 104

Query: 124 TVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFA 183
            + ++++ SS   V Y   +   + E+     D    +     SY ISK   E+    + 
Sbjct: 105 -IGKIIFASSGGTV-YGVPEQLPISES-----DPTLPI----SSYGISKLAIEKYLRLYQ 153

Query: 184 EEHGLDLVTLIPSMVVGPFICP-KFAGSVRSSLALILGNR--EEYGFLLNTSMV----HV 236
             +GLD   L  S   GP   P    G +  +L  IL     E +G   +   +    ++
Sbjct: 154 YLYGLDYTVLRISNPYGPGQRPDGKQGVIPIALNKILRGEPIEIWG---DGESIRDYIYI 210

Query: 237 DDVARAHIFLLEYPDAKGRY-ICSSHTLTIQEMAEFL------SAKYPEYPIPTVD---S 286
           DD+  A + LL     +  + I S    ++ E+   +      S +    P  T D    
Sbjct: 211 DDLVEALMALLRSKGLEEVFNIGSGIGYSLAELIAEIEKVTGRSVQVIYTPARTTDVPKI 270

Query: 287 LAEIEGYRAP-GSSSKKLLDAGFRYNY 312
           + +I   RA  G S K  L+ G    +
Sbjct: 271 VLDISRARAELGWSPKISLEDGLEKTW 297

This subgroup partially conserves the characteristic active site tetrad and NAD-binding motif of the extended SDRs, and has been identified as possible UDP-glucose 4-epimerase (aka UDP-galactose 4-epimerase), a homodimeric member of the extended SDR family. UDP-glucose 4-epimerase catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300

>gnl|CDD|187570 cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs

 Score = 62.6 bits (153), Expect = 4e-11
 Identities = 65/283 (22%), Positives = 106/283 (37%), Gaps = 47/283 (16%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
           R  +TG TG   S+L   LL+ GY V   VR        +S +   + +L    +R+ + 
Sbjct: 1   RALITGITGQDGSYLAEFLLEKGYEVHGIVR------RSSSFNTDRIDHLYINKDRITLH 54

Query: 67  HADLSHPDGFDAAIAGC--TGVLHVA----TPVDFEDKEPEEVITQRAINGTLGILKSCL 120
           + DL+       AI       + H+A      V F+D  PE    +    GTL +L+  +
Sbjct: 55  YGDLTDSSSLRRAIEKVRPDEIYHLAAQSHVKVSFDD--PEYTA-EVNAVGTLNLLE-AI 110

Query: 121 KSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKS-YAISKTLTERAA 179
           +   +    Y +S++  +        + E   S+    R      +S YA+SK   +   
Sbjct: 111 RILGLDARFYQASSSEEY------GKVQELPQSETTPFR-----PRSPYAVSKLYADWIT 159

Query: 180 LEFAEEHGLDLVTLIPSMVVGP-----FICPKFAGSV-RSSLALI----LGNREEYGFLL 229
             + E +GL  V        GP     F+  K    V R    L     LGN       L
Sbjct: 160 RNYREAYGLFAVNGRLFNHEGPRRGETFVTRKITRQVARIKAGLQPVLKLGN-------L 212

Query: 230 NTS--MVHVDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAE 270
           +         D   A+  LL+  +     I +  T +++E  E
Sbjct: 213 DAKRDWGDARDYVEAYWLLLQQGEPDDYVIATGETHSVREFVE 255

GDP-mannose 4,6 dehydratase, a homodimeric SDR, catalyzes the NADP(H)-dependent conversion of GDP-(D)-mannose to GDP-4-keto, 6-deoxy-(D)-mannose in the fucose biosynthesis pathway. These proteins have the canonical active site triad and NAD-binding pattern, however the active site Asn is often missing and may be substituted with Asp. A Glu residue has been identified as an important active site base. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316

>gnl|CDD|187554 cd05243, SDR_a5, atypical (a) SDRs, subgroup 5

 Score = 61.1 bits (149), Expect = 4e-11
 Identities = 34/127 (26%), Positives = 48/127 (37%), Gaps = 18/127 (14%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
           +V V G TG +   ++  LLD GY V   VR   DP                 +    + 
Sbjct: 1   KVLVVGATGKVGRHVVRELLDRGYQVRALVR---DPSQAEKL----------EAAGAEVV 47

Query: 67  HADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVK 126
             DL+  +   AA+ G   V+  A          E V     IN    ++ +  K+G VK
Sbjct: 48  VGDLTDAESLAAALEGIDAVISAAGSGGKGGPRTEAVDYDGNIN----LIDAAKKAG-VK 102

Query: 127 RVVYTSS 133
           R V  SS
Sbjct: 103 RFVLVSS 109

This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 203

>gnl|CDD|187551 cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs

 Score = 61.6 bits (150), Expect = 7e-11
 Identities = 58/243 (23%), Positives = 86/243 (35%), Gaps = 43/243 (17%)

Query: 8   VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH 67
           + VTG  G +   L  RL      +         P              PG+  ++    
Sbjct: 1   ILVTGAAGGLGRLLARRLAASPRVIGVDGLDRRRP--------------PGSPPKVEYVR 46

Query: 68  ADLSHPDGFDA-AIAGCTGVLHVATPVDFEDKEPEEVITQRAIN--GTLGILKSCLKSGT 124
            D+  P   D         V+H+A  +D      E    +  IN  GT  +L +C  +G 
Sbjct: 47  LDIRDPAAADVFREREADAVVHLAFILDPPRDGAE----RHRINVDGTQNVLDACAAAG- 101

Query: 125 VKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKS-YAISKTLTERAALEFA 183
           V RVV TSS A    +  +   + E           L    +  Y+  K   E+   EF 
Sbjct: 102 VPRVVVTSSVAVYGAHPDNPAPLTED--------APLRGSPEFAYSRDKAEVEQLLAEFR 153

Query: 184 EEH-GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE---EYGFLLNTSMVHVDDV 239
             H  L++  L P+ ++GP          R++    L  R      GF      +H DDV
Sbjct: 154 RRHPELNVTVLRPATILGP--------GTRNTTRDFLSPRRLPVPGGFDPPFQFLHEDDV 205

Query: 240 ARA 242
           ARA
Sbjct: 206 ARA 208

Members of this bacterial subgroup are identified as possible sugar epimerases, such as UDP-glucose 4 epimerase. However, while the NAD(P)-binding motif is fairly well conserved, not all members retain the canonical active site tetrad of the extended SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 306

>gnl|CDD|200431 TIGR04180, EDH_00030, NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family

 Score = 59.2 bits (144), Expect = 5e-10
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 13/130 (10%)

Query: 8   VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGA-SERLRI 65
           V VTG  GFI S L+  L+  GY V   V         NS +   +L   P    +++ +
Sbjct: 1   VLVTGADGFIGSHLVEALVRQGYEVRAFVLY-------NSFNSWGWLDTSPPEVKDKIEV 53

Query: 66  FHADLSHPDGFDAAIAGCTGVLHVAT--PVDFEDKEPEEVITQRAINGTLGILKSCLKSG 123
              D+  PD    A+ GC  V H+A    + +    P+  +    + GTL +L++    G
Sbjct: 54  VTGDIRDPDSVRKAMKGCDVVFHLAALIAIPYSYIAPDSYV-DTNVTGTLNVLQAARDLG 112

Query: 124 TVKRVVYTSS 133
            V++VV+TS+
Sbjct: 113 -VEKVVHTST 121

This clade within the NAD dependent epimerase/dehydratase superfamily (pfam01370) is characterized by inclusion of its members within a cassette of seven distinctive enzymes. These include four genes homologous to the elements of the neuraminic (sialic) acid biosynthesis cluster (NeuABCD), an aminotransferase and a nucleotidyltransferase in addition to the epimerase/dehydratase. Together it is very likely that these enzymes direct the biosynthesis of a nine-carbon sugar analagous to CMP-neuraminic acid. These seven genes form the core of the cassette, although they are often accompanied by additional genes that may further modify the product sugar. Although this cassette is widely distributed in bacteria, the family nomenclature arises from the instance in Leptospira interrogans serovar Lai, str. 56601, where it appears as the 30th gene in the 91-gene lipopolysaccharide biosynthesis cluster. Length = 297

>gnl|CDD|187550 cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs

 Score = 56.1 bits (136), Expect = 6e-09
 Identities = 68/287 (23%), Positives = 116/287 (40%), Gaps = 65/287 (22%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYS-VTTTVRSELDPEHRNSKDLSFLKNLPGASERLRI 65
           ++ VTG  G + S ++  L   GY  V      ELD   + +    F K  P       +
Sbjct: 1   KILVTGHRGLVGSAIVRVLARRGYENVVFRTSKELDLTDQEAVRAFFEKEKPDY-----V 55

Query: 66  FHADLSHPDGFDAAIAGCTGVLHVAT-PVDFEDKEPEEVITQRAINGTLGILKSCLKSGT 124
            H          AA  G  G++   T P DF        +    +     ++ +  + G 
Sbjct: 56  IHL---------AAKVG--GIVANMTYPADF--------LRDNLLIND-NVIHAAHRFG- 94

Query: 125 VKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIR-KLDSWGKSYAISKTLTERAALEFA 183
           VK++V+  S+    Y D     +DE+     D +    +   + YAI+K    +    + 
Sbjct: 95  VKKLVFLGSSCI--YPDLAPQPIDES-----DLLTGPPEPTNEGYAIAKRAGLKLCEAYR 147

Query: 184 EEHGLDLVTLIPSMVVGPFICPKFAGSVRSSL--ALI-------LGNREE---YG----- 226
           +++G D ++++P+ + GP     F     S +  ALI       L   +E   +G     
Sbjct: 148 KQYGCDYISVMPTNLYGPH--DNFDPE-NSHVIPALIRKFHEAKLRGGKEVTVWGSGTPR 204

Query: 227 --FLLNTSMVHVDDVARAHIFLLEYPDAKGRY-ICSSHTLTIQEMAE 270
             FL      + DD+ARA +FLLE  D      + S   ++I+E+AE
Sbjct: 205 REFL------YSDDLARAIVFLLENYDEPIIVNVGSGVEISIRELAE 245

GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase) acts in the NADP-dependent synthesis of GDP-fucose from GDP-mannose. Two activities have been proposed for the same active site: epimerization and reduction. Proteins in this subgroup are extended SDRs, which have a characteristic active site tetrad and an NADP-binding motif, [AT]GXXGXXG, that is a close match to the archetypical form. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300

>gnl|CDD|233570 TIGR01777, yfcH, TIGR01777 family protein

 Score = 55.7 bits (135), Expect = 8e-09
 Identities = 77/336 (22%), Positives = 126/336 (37%), Gaps = 83/336 (24%)

Query: 8   VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH 67
           + +TGGTGFI   L  RL   G+ VT   RS   P   N+K         G         
Sbjct: 1   ILITGGTGFIGRALTQRLTKRGHEVTILTRSP--PPGANTKW-------EGYKPWAGEDA 51

Query: 68  ADLSHPDGFDAAI--AGCTGVLH-VATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGT 124
             L   +G DA I  AG   +     T       E ++ I    I+ T  +L   + +  
Sbjct: 52  DSL---EGADAVINLAG-EPIADKRWTE------ERKQEIRDSRIDTT-RLLVEAIAAAE 100

Query: 125 VKRVVYTSSNAAVFYNDKDVDMMDET-------FWSDVDYIRKLDSWGKSYAISKTLTER 177
            K  V+ S++A  +Y   +     E        F +++        W           E 
Sbjct: 101 QKPKVFISASAVGYYGPSEDREYTEEDSPAGDDFLAELCR-----DW-----------EE 144

Query: 178 AALEFAEEHGLDLVTLIPSMVVGP-------FICP--KFAGSVRSSLALILGNREEYGFL 228
           AA   AE+ G  +V L   +V+GP        + P     G         LG+  ++   
Sbjct: 145 AAQA-AEDLGTRVVLLRTGIVLGPKGGALAKMLLPFRLGLGGP-------LGSGRQW--- 193

Query: 229 LNTSMVHVDDVARAHIFLLEYPDAKGRYICSS-HTLTIQEMAEFLSAKY--P-EYPIPTV 284
              S +H++D+ +  +F LE     G    ++   +  +E A+ L+     P  +P+P  
Sbjct: 194 --FSWIHIEDLVQLILFALENASVSGPVNATAPEPVRNKEFAKALARALHRPAFFPVPAF 251

Query: 285 --------DSLAEIEGYRAPGSSSKKLLDAGFRYNY 312
                    +   ++G R      +KLL+AGF++ Y
Sbjct: 252 VLRALLGEMAALLLKGQRV---LPEKLLEAGFQFQY 284

This model represents a clade of proteins of unknown function including the E. coli yfcH protein [Hypothetical proteins, Conserved]. Length = 291

>gnl|CDD|222146 pfam13460, NAD_binding_10, NADH(P)-binding

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 42/241 (17%), Positives = 63/241 (26%), Gaps = 62/241 (25%)

Query: 10  VTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHAD 69
           V G TG     L+  LL  G+ VT   R+                     +  +     D
Sbjct: 3   VIGATGKTGRRLVKELLARGHQVTALSRNP----------------SKAPAPGVTPVQKD 46

Query: 70  LSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVV 129
           L        A+AG   V+        +              G   +L +  ++G V+R+V
Sbjct: 47  LFDLADLAEALAGVDAVVDAFGARPDDSD------------GVKHLLDAAARAG-VRRIV 93

Query: 130 YTSSNAA-VFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGL 188
             S+                  F                YA +K     AA E     GL
Sbjct: 94  VVSAAGLYRDEPGTFRLDDAPLF--------------PPYARAK----AAAEELLRASGL 135

Query: 189 DLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLE 248
           D   + P                  +  +              S +   DVA A +  LE
Sbjct: 136 DWTIVRPGA---------LFDEEGETYEIGTEGDPAGE-----SSISRADVAAALLDELE 181

Query: 249 Y 249
            
Sbjct: 182 N 182

Length = 182

>gnl|CDD|187546 cd05235, SDR_e1, extended (e) SDRs, subgroup 1

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 66/314 (21%), Positives = 118/314 (37%), Gaps = 63/314 (20%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTT--VRSELDPEHRNSKDLSFLKNLPGA----- 59
            V +TG TGF+ ++L+  LL           VR++ D E    + +  LK          
Sbjct: 1   TVLLTGATGFLGAYLLRELLKRKNVSKIYCLVRAK-DEEAALERLIDNLKEYGLNLWDEL 59

Query: 60  -SERLRIFHADLSHPD-GFDAAIAG-----CTGVLHVATPVDF----EDKEPEEVITQRA 108
              R+++   DLS P+ G               ++H    V++    E+ +P  V+    
Sbjct: 60  ELSRIKVVVGDLSKPNLGLSDDDYQELAEEVDVIIHNGANVNWVYPYEELKPANVL---- 115

Query: 109 INGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSY 168
             GT  +LK    +G +K + + S+  +VF  ++   + DE      D +   +     Y
Sbjct: 116 --GTKELLKLAA-TGKLKPLHFVST-LSVFSAEEYNALDDE---ESDDMLESQNGLPNGY 168

Query: 169 AISKTLTERAALEFAEEHGLDLVTLIPSMVVGP-FICPKFAGS--------------VRS 213
             SK + E+   E A          +P  ++ P  I   F  S              ++ 
Sbjct: 169 IQSKWVAEKLLREAANRG-------LPVAIIRPGNI---FGDSETGIGNTDDFFWRLLKG 218

Query: 214 SLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDAKGR--YICSSHTLTIQEMAEF 271
            L   LG     G  L+  +  VD VARA + L      +    ++ +   +++ ++ + 
Sbjct: 219 CLQ--LGIYPISGAPLD--LSPVDWVARAIVKLALNESNEFSIYHLLNPPLISLNDLLDA 274

Query: 272 LSAKYPEYPIPTVD 285
           L  K   Y I  V 
Sbjct: 275 LEEK--GYSIKEVS 286

This family consists of an SDR module of multidomain proteins identified as putative polyketide sythases fatty acid synthases (FAS), and nonribosomal peptide synthases, among others. However, unlike the usual ketoreductase modules of FAS and polyketide synthase, these domains are related to the extended SDRs, and have canonical NAD(P)-binding motifs and an active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 290

>gnl|CDD|187545 cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, subgroup 2, extended (e) SDRs

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 43/146 (29%), Positives = 64/146 (43%), Gaps = 27/146 (18%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVT------TTVRSELDPEHRNSKDLSFLKNLPGAS 60
           R+ VTGG GFI S L+ RLL+ G  V       +  R  ++PE  N K   F+K      
Sbjct: 1   RILVTGGAGFIGSHLVDRLLEEGNEVVVVDNLSSGRRENIEPEFEN-KAFRFVK------ 53

Query: 61  ERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVD--FEDKEPEEVITQRAINGTLGILKS 118
             L    AD       D        V H+A   D      +P+  + +  +  T  +L++
Sbjct: 54  RDLLDT-ADKVAKKDGDT-------VFHLAANPDVRLGATDPDIDLEENVL-ATYNVLEA 104

Query: 119 CLKSGTVKRVVYTSSNAAVFYNDKDV 144
              +G VKR+V+ SS + V Y +  V
Sbjct: 105 MRANG-VKRIVFASS-STV-YGEAKV 127

UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of archaeal and bacterial proteins, and has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305

>gnl|CDD|187557 cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs

 Score = 54.5 bits (132), Expect = 2e-08
 Identities = 64/264 (24%), Positives = 98/264 (37%), Gaps = 68/264 (25%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSF---LKNLP--GASE 61
           ++ VTGG GFI S  +  LL+            LD        L++   L+NL    +S 
Sbjct: 2   KILVTGGAGFIGSNFVRYLLNKYPDYKIIN---LD-------KLTYAGNLENLEDVSSSP 51

Query: 62  RLRIFHADLSHPDGFDAAIA--GCTGVLHVA--TPVDFEDKEPEEVITQRAINGTLGILK 117
           R R    D+   +  D          V+H A  + VD    +PE  I +  + GT  +L+
Sbjct: 52  RYRFVKGDICDAELVDRLFEEEKIDAVIHFAAESHVDRSISDPEPFI-RTNVLGTYTLLE 110

Query: 118 SCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKS---------- 167
           +  K G VKR V+ S+              DE +         L   G+           
Sbjct: 111 AARKYG-VKRFVHIST--------------DEVYGD-------LLDDGEFTETSPLAPTS 148

Query: 168 -YAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPF-----ICPKFAGSVRSSLALILGN 221
            Y+ SK   +     +   +GL +V    S   GP+     + P F       +   L  
Sbjct: 149 PYSASKAAADLLVRAYHRTYGLPVVITRCSNNYGPYQFPEKLIPLF-------ILNALDG 201

Query: 222 REE--YGFLLNT-SMVHVDDVARA 242
           +    YG  LN    ++V+D ARA
Sbjct: 202 KPLPIYGDGLNVRDWLYVEDHARA 225

This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 315

>gnl|CDD|187558 cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs

 Score = 53.7 bits (130), Expect = 3e-08
 Identities = 68/280 (24%), Positives = 110/280 (39%), Gaps = 75/280 (26%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
           +V VTGG G+I S  ++ LL+ GY V       LD      ++   L        R+  +
Sbjct: 1   KVLVTGGAGYIGSHTVVELLEAGYDVVV-----LDNLSNGHRE--ALP--RIEKIRIEFY 51

Query: 67  HADLSHPDGFDAAIA--GCTGVLH----------VATPVDFEDKEPEEVITQRAINGTLG 114
             D+      D   A      V+H          V  P+ + D           + GTL 
Sbjct: 52  EGDIRDRAALDKVFAEHKIDAVIHFAALKAVGESVQKPLKYYDNN---------VVGTLN 102

Query: 115 ILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTL 174
           +L++    G VK  V+ SS+AAV Y + +   + E        +   + +G+    +K +
Sbjct: 103 LLEAMRAHG-VKNFVF-SSSAAV-YGEPETVPITEE-----APLNPTNPYGR----TKLM 150

Query: 175 TERAALEFAEEHGLDLVTL--------IPSMVVG----------PFICPKFAGSVRSSLA 216
            E+   + A+  GL+ V L         PS ++G          P++  + A   R  LA
Sbjct: 151 VEQILRDLAKAPGLNYVILRYFNPAGAHPSGLIGEDPQIPNNLIPYVL-QVALGRREKLA 209

Query: 217 LILGNREEYGFLLNT-------SMVHVDDVARAHIFLLEY 249
            I G+  +Y     T         +HV D+A AH+  LE 
Sbjct: 210 -IFGD--DY----PTPDGTCVRDYIHVVDLADAHVLALEK 242

UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 323

>gnl|CDD|225857 COG3320, COG3320, Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 53.6 bits (129), Expect = 4e-08
 Identities = 62/276 (22%), Positives = 100/276 (36%), Gaps = 37/276 (13%)

Query: 7   RVCVTGGTGFIASWLIMRLLD--HGYSVTTTVRSELDPEHRNSKDLSFLKNLPG------ 58
            V +TG TGF+ ++L++ LLD      V   VR++   E   ++     K          
Sbjct: 2   NVLLTGATGFLGAYLLLELLDRSDA-KVICLVRAQ-SDEAALAR---LEKTFDLYRHWDE 56

Query: 59  -ASERLRIFHADLSHPD-GFDAA----IAGCTG-VLHVATPVDFEDKEPEEVITQRAIN- 110
            +++R+ +   DL+ PD G        +A     ++H A  V+     P      R  N 
Sbjct: 57  LSADRVEVVAGDLAEPDLGLSERTWQELAENVDLIIHNAALVNH--VFPYS--ELRGANV 112

Query: 111 -GTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYA 169
            GT  +L+    +G  K + Y SS +      +        F                Y 
Sbjct: 113 LGTAEVLRLAA-TGKPKPLHYVSSISV--GETEYYSNFTVDFDEISPTRNVGQGLAGGYG 169

Query: 170 ISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGS---VRSSLALI-LGNREEY 225
            SK + E+   E A + GL +    P  + G              R  L L+ LG   + 
Sbjct: 170 RSKWVAEKLVRE-AGDRGLPVTIFRPGYITGDSRTGALNTRDFLTRLVLGLLQLGIAPDS 228

Query: 226 GFLLNTSMVHVDDVARAHIFLLEYP-DAKGRYICSS 260
            + L+  M+ VD VARA +       +A       S
Sbjct: 229 EYSLD--MLPVDHVARAVVAPSVQVAEAIAALGAHS 262

Length = 382

>gnl|CDD|187561 cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs

 Score = 51.9 bits (125), Expect = 8e-08
 Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 21/124 (16%)

Query: 10  VTGGTGFIASWLIMRLLDH-GYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHA 68
           V G TG     ++  LL   G+ V    R   DP    +K L        A+  + +   
Sbjct: 3   VFGATGKQGGSVVRALLKDPGFKVRALTR---DPSSPAAKAL--------AAPGVEVVQG 51

Query: 69  DLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRV 128
           DL  P+  +AA+ G  GV  V     +E    +E+   +  N    ++ +  ++G V+  
Sbjct: 52  DLDDPESLEAALKGVYGVFLVTDF--WEAGGEDEI--AQGKN----VVDAAKRAG-VQHF 102

Query: 129 VYTS 132
           V++S
Sbjct: 103 VFSS 106

NmrA and HSCARG like proteins. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 242

>gnl|CDD|233557 TIGR01746, Thioester-redct, thioester reductase domain

 Score = 52.8 bits (127), Expect = 9e-08
 Identities = 68/306 (22%), Positives = 105/306 (34%), Gaps = 49/306 (16%)

Query: 8   VCVTGGTGFIASWLIMRLLD--HGYSVTTTVRSELDPEH-----RNSKDLSFLKNLPGAS 60
           V +TG TGF+ ++L+  LL       V   VR+    EH     R +     L +   A 
Sbjct: 2   VLLTGATGFLGAYLLEELLRRSTQAKVICLVRAA-SEEHAMERLREALRSYRLWHEDLAR 60

Query: 61  ERLRIFHADLSHPD-GFDAA-----IAGCTGVLHVATPVDFEDKEPEEVITQRAIN--GT 112
           ER+ +   DLS P  G   A           ++H    V++      E+   R  N  GT
Sbjct: 61  ERIEVVAGDLSEPRLGLSDAEWERLAENVDTIVHNGALVNWV-YPYSEL---RGANVLGT 116

Query: 113 LGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISK 172
             +L+    SG  K + Y S+ +     D      D+        +         YA SK
Sbjct: 117 REVLRLAA-SGRAKPLHYVSTISVGAAIDLSTVTEDDAT------VTPPPGLAGGYAQSK 169

Query: 173 TLTERAALEFAEEHGLDLVTLIPSMVVGP----------FICPKFAGSVRSSLALILGNR 222
            + E    E A + GL +  + P  ++G            +     G +           
Sbjct: 170 WVAELLVRE-ASDRGLPVTIVRPGRILGNSYTGAINSSDILWRMVKGCLALGAYPQSPEL 228

Query: 223 EEYGFLLNTSMVHVDDVARAHIFLLEYPDAKGRYICSSHTLTIQEM--AEFLSA-KYPEY 279
            E        +  VD VARA + L   P A        H +  + +   EFL   +   Y
Sbjct: 229 TE-------DLTPVDFVARAIVVLSSRPAASAGGP-VFHVVNPEPVSLDEFLDWLERAGY 280

Query: 280 PIPTVD 285
            +  V 
Sbjct: 281 NLRLVS 286

This model includes the terminal domain from the fungal alpha aminoadipate reductase enzyme (also known as aminoadipate semialdehyde dehydrogenase) which is involved in the biosynthesis of lysine , as well as the reductase-containing component of the myxochelin biosynthetic gene cluster, MxcG. The mechanism of reduction involves activation of the substrate by adenylation and transfer to a covalently-linked pantetheine cofactor as a thioester. This thioester is then reduced to give an aldehyde (thus releasing the product) and a regenerated pantetheine thiol. (In myxochelin biosynthesis this aldehyde is further reduced to an alcohol or converted to an amine by an aminotransferase.) This is a fundamentally different reaction than beta-ketoreductase domains of polyketide synthases which act at a carbonyl two carbons removed from the thioester and forms an alcohol as a product. This domain is invariably found at the C-terminus of the proteins which contain it (presumably because it results in the release of the product). The majority of hits to this model are non-ribosomal peptide synthetases in which this domain is similarly located proximal to a thiolation domain (pfam00550). In some cases this domain is found at the end of a polyketide synthetase enzyme, but is unlike ketoreductase domains which are found before the thiolase domains. Exceptions to this observed relationship with the thiolase domain include three proteins which consist of stand-alone reductase domains (GP|466833 from M. leprae, GP|435954 from Anabaena and OMNI|NTL02SC1199 from Strep. coelicolor) and one protein (OMNI|NTL01NS2636 from Nostoc) which contains N-terminal homology with a small group of hypothetical proteins but no evidence of a thiolation domain next to the putative reductase domain. Below the noise cutoff to this model are proteins containing more distantly related ketoreductase and dehydratase/epimerase domains. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. Length = 367

>gnl|CDD|187547 cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 75/331 (22%), Positives = 117/331 (35%), Gaps = 69/331 (20%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTT---VR--SELDPEHR-----NSKDLSFLKNL 56
            V +TG TGF+   L+ +LL     +      +R  S    E R       K     +NL
Sbjct: 2   SVLITGATGFLGKVLLEKLLRSCPDIGKIYLLIRGKSGQSAEERLRELLKDKLFDRGRNL 61

Query: 57  -PGASERLRIFHADLSHPD-GFDAAIAGC-----TGVLHVATPVDFEDKEPEEVITQRAI 109
            P    ++     DLS P+ G               ++H A  V F+++  E +    +I
Sbjct: 62  NPLFESKIVPIEGDLSEPNLGLSDEDLQTLIEEVNIIIHCAATVTFDERLDEAL----SI 117

Query: 110 N--GTLGILKSCLKSGTVKRVVYTS---SNAAVFYNDKDVDMMDETFWSDVDYIRKLD-- 162
           N  GTL +L+   +   +K  V+ S    N      ++ V          +D +  +D  
Sbjct: 118 NVLGTLRLLELAKRCKKLKAFVHVSTAYVNGDRQLIEEKVYPPPADPEKLIDILELMDDL 177

Query: 163 -----------SWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVG----PFICPKF 207
                          +Y  +K L ER  L+      L LV + PS+V      PF  P +
Sbjct: 178 ELERATPKLLGGHPNTYTFTKALAERLVLKERG--NLPLVIVRPSIVGATLKEPF--PGW 233

Query: 208 AGSVRSSLALILGNREEYGFLLNTSM----------VHVDDVARAHIFLLEYP-DAKGR- 255
             +      L L     YG  +  +M          + VD VA A +    Y    K R 
Sbjct: 234 IDNFNGPDGLFLA----YGKGILRTMNADPNAVADIIPVDVVANALLAAAAYSGVRKPRE 289

Query: 256 ---YICSS---HTLTIQEMAEFLSAKYPEYP 280
              Y C S   +  T  E  E ++    + P
Sbjct: 290 LEVYHCGSSDVNPFTWGEAEELINQYLKKNP 320

SDRs are Rossmann-fold NAD(P)H-binding proteins, many of which may function as fatty acyl CoA reductases (FAR), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. This N-terminal domain shares the catalytic triad (but not the upstream Asn) and characteristic NADP-binding motif of the extended SDR family. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 320

>gnl|CDD|187541 cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 68/278 (24%), Positives = 110/278 (39%), Gaps = 44/278 (15%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRI 65
           R+ +TGG GF+ S L  RLL+ G+ V       +D      K  +  L   P        
Sbjct: 2   RILITGGAGFLGSHLCDRLLEDGHEVIC-----VDNFFTGRKRNIEHLIGHP----NFEF 52

Query: 66  FHADLSHP--DGFDAAIAGCTGVLHVA---TPVDFEDKEPEEVITQRAINGTLGILKSCL 120
              D++ P     D        + H+A   +PV ++   P + +    + GTL +L    
Sbjct: 53  IRHDVTEPLYLEVDQ-------IYHLACPASPVHYQ-YNPIKTLKTNVL-GTLNMLGLAK 103

Query: 121 KSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYI--RKLDSWGKSYAISKTLTERA 178
           + G   RV+  S++    Y D +V    E++W +V+ I  R        Y   K + E  
Sbjct: 104 RVGA--RVLLASTSEV--YGDPEVHPQPESYWGNVNPIGPR------SCYDEGKRVAETL 153

Query: 179 ALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREE----YGFLLNT-SM 233
            + +  +HG+D+         GP + P     V + +   L  R E    YG    T S 
Sbjct: 154 CMAYHRQHGVDVRIARIFNTYGPRMHPNDGRVVSNFIVQAL--RGEPITVYGDGTQTRSF 211

Query: 234 VHVDDVARAHIFLLEYPDAKGRY-ICSSHTLTIQEMAE 270
            +V D+    I L+      G   + +    TI E+AE
Sbjct: 212 QYVSDLVEGLIRLMNSDYFGGPVNLGNPEEFTILELAE 249

UGD catalyzes the formation of UDP-xylose from UDP-glucuronate; it is an extended-SDR, and has the characteristic glycine-rich NAD-binding pattern, TGXXGXXG, and active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305

>gnl|CDD|187568 cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 13/133 (9%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVT---TTVRSELDPEHRNSKDLSFLKNLPGASERL 63
           RV +TGG GFI S L    L  G+ V      +R        N   L   +   G    +
Sbjct: 2   RVLITGGAGFIGSNLARFFLKQGWEVIGFDNLMRRGSF---GNLAWLKANREDGG----V 54

Query: 64  RIFHADLSHPDGFDAAIAGCTGVLHVA--TPVDFEDKEPEEVITQRAINGTLGILKSCLK 121
           R  H D+ + +  +        ++H A    V      P       A  GTL +L++  +
Sbjct: 55  RFVHGDIRNRNDLEDLFEDIDLIIHTAAQPSVTTSASSPRLDFETNA-LGTLNVLEAARQ 113

Query: 122 SGTVKRVVYTSSN 134
                  ++TS+N
Sbjct: 114 HAPNAPFIFTSTN 126

CDP-tyvelose 2-epimerase is a tetrameric SDR that catalyzes the conversion of CDP-D-paratose to CDP-D-tyvelose, the last step in tyvelose biosynthesis. This subgroup is a member of the extended SDR subfamily, with a characteristic active site tetrad and NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 337

>gnl|CDD|187576 cd05266, SDR_a4, atypical (a) SDRs, subgroup 4

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 59/266 (22%), Positives = 90/266 (33%), Gaps = 57/266 (21%)

Query: 13  GTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSH 72
           G G++   L  +LL  G+ VT T RS                  P          ADL+ 
Sbjct: 5   GCGYLGQRLARQLLAQGWQVTGTTRSP-----EKLAADRPAGVTP--------LAADLTQ 51

Query: 73  PDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTS 132
           P      +A    ++ ++ P              RA+   L       +   V+RV+Y S
Sbjct: 52  PG----LLADVDHLV-ISLPPPAGSYRGGYDPGLRALLDALA------QLPAVQRVIYLS 100

Query: 133 SNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDL-- 190
           S   V Y D+  + +DET                S     T + RA LE AE+  L L  
Sbjct: 101 S-TGV-YGDQQGEWVDET----------------SPPNPSTESGRALLE-AEQALLALGS 141

Query: 191 --VTLI-PSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLL 247
              T++  + + GP   P       +                 T+ +HVDD+  A  F L
Sbjct: 142 KPTTILRLAGIYGPGRHP---LRRLAQGTGRPPAGNAP-----TNRIHVDDLVGALAFAL 193

Query: 248 EYPDAKGRY-ICSSHTLTIQEMAEFL 272
           + P     Y +     +T  E  +  
Sbjct: 194 QRPAPGPVYNVVDDLPVTRGEFYQAA 219

Atypical SDRs in this subgroup are poorly defined, one member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is related to, but is different from, the archetypical SDRs, GXGXXG. This subgroup also lacks most of the characteristic active site residues of the SDRs; however, the upstream Ser is present at the usual place, and some potential catalytic residues are present in place of the usual YXXXK active site motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 251

>gnl|CDD|224015 COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 77/326 (23%), Positives = 126/326 (38%), Gaps = 64/326 (19%)

Query: 8   VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH 67
           + +TGGTG I   L  RL   G+ VT   R    P   +      +    G ++ L    
Sbjct: 1   ILITGGTGLIGRALTARLRKGGHQVTILTRR---PPKASQNLHPNVTLWEGLADAL---- 53

Query: 68  ADLSHPDGFDAAI--AGCTGVLHVATPVDFE---DKEPEEVITQRAINGTLGILKSCLKS 122
                  G DA I  AG         P+  E    ++ +E I Q  IN T   L   + +
Sbjct: 54  -----TLGIDAVINLAG--------EPI-AERRWTEKQKEEIRQSRINTT-EKLVELIAA 98

Query: 123 GTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKL-DSWGKSYAISKTLTERAALE 181
              K  V  S++A  +Y      ++ E      D++ +L   W           E  AL+
Sbjct: 99  SETKPKVLISASAVGYYGHSGDRVVTEESPPGDDFLAQLCQDW-----------EEEALQ 147

Query: 182 FAEEHGLDLVTLIPSMVVGPF--ICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDV 239
            A++ G  +V L   +V+ P      K     +  L   LG+  ++      S +H++D+
Sbjct: 148 -AQQLGTRVVLLRTGVVLSPDGGALGKMLPLFKLGLGGKLGSGRQW-----FSWIHIEDL 201

Query: 240 ARAHIFLLEYPDAKGRYICSS-HTLTIQEMAEFLSA---KYPEYPIPTV-------DSLA 288
             A +FLLE     G +  ++ + +  +E A  L     +    P+P+        +   
Sbjct: 202 VNAILFLLENEQLSGPFNLTAPNPVRNKEFAHALGRALHRPAILPVPSFALRLLLGEMAD 261

Query: 289 EI-EGYRA-PGSSSKKLLDAGFRYNY 312
            +  G R  P    KKL  AGF++ Y
Sbjct: 262 LLLGGQRVLP----KKLEAAGFQFQY 283

Length = 297

>gnl|CDD|187556 cd05245, SDR_a2, atypical (a) SDRs, subgroup 2

 Score = 49.3 bits (118), Expect = 9e-07
 Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 26/130 (20%)

Query: 8   VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH 67
           V VTG TG++   L+ RLL  G+ V   VRS      +       L + P  SER+ +  
Sbjct: 1   VLVTGATGYVGGRLVPRLLQEGHQVRALVRS----PEK-------LADRP-WSERVTVVR 48

Query: 68  ADLSHPDGFDAAIAGCTGV---LHVATP-VDFEDKEPEEVITQRAINGTLGILKSCLKSG 123
            DL  P+   AA+ G       +H      DFE+ +      + A N      ++   +G
Sbjct: 49  GDLEDPESLRAALEGIDTAYYLVHSMGSGGDFEEAD-----RRAARN----FARAARAAG 99

Query: 124 TVKRVVYTSS 133
            VKR++Y   
Sbjct: 100 -VKRIIYLGG 108

This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293

>gnl|CDD|187581 cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME)-like, extended (e) SDRs

 Score = 49.4 bits (118), Expect = 9e-07
 Identities = 69/319 (21%), Positives = 118/319 (36%), Gaps = 53/319 (16%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
           R  VTG  GFI S L  RL   G+ V         PEH               ++     
Sbjct: 2   RALVTGAGGFIGSHLAERLKAEGHYV--RGADWKSPEHMTQ-----------PTDDDEFH 48

Query: 67  HADLSHPDGFDAAIAGCTGVLHVATPV---DFEDKEPEEVI-TQRAINGTLGILKSCLKS 122
             DL   +    A  G   V H+A  +    +       ++     IN    +L++   +
Sbjct: 49  LVDLREMENCLKATEGVDHVFHLAADMGGMGYIQSNHAVIMYNNTLIN--FNMLEAARIN 106

Query: 123 GTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSW----GKSYAISKTLTERA 178
           G V+R ++ SS A V+   K ++       + V  +R+ D+W      +Y   K  TER 
Sbjct: 107 G-VERFLFASS-ACVYPEFKQLE-------TTVVRLREEDAWPAEPQDAYGWEKLATERL 157

Query: 179 ALEFAEEHGLDLVTLIPSMVVGPF-------------ICPKFAGSVRSSLALILGNREEY 225
              + E++G++   +    + GP              +C K A       A      E +
Sbjct: 158 CQHYNEDYGIETRIVRFHNIYGPRGTWDGGREKAPAAMCRKVA------TAKDGDRFEIW 211

Query: 226 GFLLNT-SMVHVDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTV 284
           G  L T S  ++DD       L+E    +   + S   +++ E+AE + + +   P+  +
Sbjct: 212 GDGLQTRSFTYIDDCVEGLRRLMESDFGEPVNLGSDEMVSMNELAEMVLS-FSGKPLEII 270

Query: 285 DSLAEIEGYRAPGSSSKKL 303
                 +G R   S +  L
Sbjct: 271 HHTPGPQGVRGRNSDNTLL 289

This subgroup of NDP-sugar epimerase/dehydratases are extended SDRs; they have the characteristic active site tetrad, and an NAD-binding motif: TGXXGXX[AG], which is a close match to the canonical NAD-binding motif. Members include Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME) which catalyzes the epimerization of two positions of GDP-alpha-D-mannose to form GDP-beta-L-galactose. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 328

>gnl|CDD|223774 COG0702, COG0702, Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 56/273 (20%), Positives = 82/273 (30%), Gaps = 61/273 (22%)

Query: 6   GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRI 65
            ++ VTG TGF+   ++  LL  G+ V   VR+                   G    L  
Sbjct: 1   MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA----------GGVEVVL-- 48

Query: 66  FHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTV 125
              DL  P    A   G  GVL ++  +D  D           +   +   ++      V
Sbjct: 49  --GDLRDPKSLVAGAKGVDGVLLISGLLDGSDAFR-----AVQVTAVVRAAEAAGAG--V 99

Query: 126 KRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFA-E 184
           K  V  S              +     S     R                 +AA+E A  
Sbjct: 100 KHGVSLSV-------------LGADAASPSALAR----------------AKAAVEAALR 130

Query: 185 EHGLDLVTL-IPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAH 243
             G+   TL   +  +G       A        +  G           S + VDDVA A 
Sbjct: 131 SSGIPYTTLRRAAFYLGAGAAFIEAAEAAGLPVIPRGI-------GRLSPIAVDDVAEAL 183

Query: 244 IFLLEYPDAKGR--YICSSHTLTIQEMAEFLSA 274
              L+ P   GR   +     LT+ E+A  L  
Sbjct: 184 AAALDAPATAGRTYELAGPEALTLAELASGLDY 216

Length = 275

>gnl|CDD|187549 cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 48/201 (23%), Positives = 80/201 (39%), Gaps = 33/201 (16%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
           +V +TG +GF+   L  RLL           S++  E     D+   K  P  + R+   
Sbjct: 2   KVLITGASGFVGQRLAERLL-----------SDVPNERLILIDVVSPKA-PSGAPRVTQI 49

Query: 67  HADLSHPDGFDAAIAG-CTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTV 125
             DL+ P   +A   G    V H+A  V    +   ++  +  ++GT  +L++  K+G  
Sbjct: 50  AGDLAVPALIEALANGRPDVVFHLAAIVSGGAEADFDLGYRVNVDGTRNLLEALRKNGPK 109

Query: 126 KRVVYTSSNAAVFYNDKDVDMMDET----FWSDVDYIRKLDSWGKSYAISKTLTERAALE 181
            R V+TSS  AV+       + D T                    SY   K + E    +
Sbjct: 110 PRFVFTSS-LAVYGLPLPNPVTDHTALDPAS--------------SYGAQKAMCELLLND 154

Query: 182 FAEEHGLDLVTLI-PSMVVGP 201
           ++    +D  TL  P++ V P
Sbjct: 155 YSRRGFVDGRTLRLPTVCVRP 175

Nucleoside-diphosphate-sugar 4-epimerase has the characteristic active site tetrad and NAD-binding motif of the extended SDR, and is related to more specifically defined epimerases such as UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), which catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup includes Escherichia coli 055:H7 Gne, a UDP-GlcNAc 4-epimerase, essential for O55 antigen synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305

>gnl|CDD|187578 cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 53/269 (19%), Positives = 92/269 (34%), Gaps = 66/269 (24%)

Query: 10  VTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHAD 69
           VTG TG + + ++  LL    SV   VR+        +K  +      G      +   D
Sbjct: 3   VTGATGKLGTAVVELLLAKVASVVALVRNP-----EKAKAFAA----DGV----EVRQGD 49

Query: 70  LSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVV 129
              P+  + A  G   +L + +P D ED+  +    +  I+       +  ++G VK +V
Sbjct: 50  YDDPETLERAFEGVDRLLLI-SPSDLEDRIQQH---KNFID-------AAKQAG-VKHIV 97

Query: 130 YTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLD 189
           Y S          +    D  F              + +      TE+      E  G+ 
Sbjct: 98  YLS-----ASGADE----DSPF-----------LLARDHGA----TEKY----LEASGIP 129

Query: 190 LVTLIPSMVVGPFICPKFAGSVRSS--LALILGNREEYGFLLNTSMVHVDDVARAHIFLL 247
              L P   +      +F  S+     +    G+ +        + V   D+A A    L
Sbjct: 130 YTILRPGWFMDNL--LEFLPSILEEGTIYGPAGDGK-------VAFVDRRDIAEAAAAAL 180

Query: 248 EYPDAKGR-Y-ICSSHTLTIQEMAEFLSA 274
             P  +G+ Y +     L+  E+A  LS 
Sbjct: 181 TEPGHEGKVYNLTGPEALSYAELAAILSE 209

TMR is an atypical NADP-binding protein of the SDR family. It lacks the active site residues of the SDRs but has a glycine rich NAD(P)-binding motif that matches the extended SDRs. Proteins in this subgroup however, are more similar in length to the classical SDRs. TMR was identified as a reducer of triphenylmethane dyes, important environmental pollutants. This subgroup also includes Escherichia coli NADPH-dependent quinine oxidoreductase (QOR2), which catalyzes two-electron reduction of quinone; but is unlikely to play a major role in protecting against quinone cytotoxicity. Atypical SDRs are distinct from classical SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 272

>gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 19/126 (15%)

Query: 8   VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH 67
           + + G TGFI   L   LL+ G+ VT  V        RN+K LS     P A        
Sbjct: 1   ILILGATGFIGRALARELLEQGHEVTLLV--------RNTKRLSKEDQEPVAVV-----E 47

Query: 68  ADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKR 127
            DL   D    A+ G   V+H+A     + ++  EV     + GT  +L++  K   VK 
Sbjct: 48  GDLRDLDSLSDAVQGVDVVIHLAGA-PRDTRDFCEVD----VEGTRNVLEAA-KEAGVKH 101

Query: 128 VVYTSS 133
            ++ SS
Sbjct: 102 FIFISS 107

Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176

>gnl|CDD|224012 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 68/290 (23%), Positives = 106/290 (36%), Gaps = 74/290 (25%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
           +V VTGG G+I S  + +LL  G+ V       LD      K    L  L       + +
Sbjct: 2   KVLVTGGAGYIGSHTVRQLLKTGHEVVV-----LDNLSNGHKI--ALLKLQF-----KFY 49

Query: 67  HADLSHPDGFDAAIA--GCTGVLH----------VATPVDFEDKEPEEVITQRAINGTLG 114
             DL       A         V+H          V  P+ + D           + GTL 
Sbjct: 50  EGDLLDRALLTAVFEENKIDAVVHFAASISVGESVQNPLKYYDNN---------VVGTLN 100

Query: 115 ILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTL 174
           ++++ L++G VK+ ++ SS AAV Y +     + ET                 Y  SK +
Sbjct: 101 LIEAMLQTG-VKKFIF-SSTAAV-YGEPTTSPISETSPLAPI---------NPYGRSKLM 148

Query: 175 TERAALEFAEEHGLDLVTL--------IPSMVVG----------PFICPKFAGSVRSSLA 216
           +E    + A+ +   +V L         P   +G          P       G  R  L 
Sbjct: 149 SEEILRDAAKANPFKVVILRYFNVAGACPDGTLGQRYPGATLLIPVAAEAALGK-RDKLF 207

Query: 217 LILGNREEYGFLLNTSM---VHVDDVARAHIFLLEYPDAKGRYICSSHTL 263
            I G+  +Y     T +   +HVDD+A AH+  L+Y    G    S++  
Sbjct: 208 -IFGD--DYDTKDGTCIRDYIHVDDLADAHVLALKYLKEGG----SNNIF 250

Length = 329

>gnl|CDD|187672 cd09812, 3b-HSD_like_1_SDR_e, 3beta-hydroxysteroid dehydrogenase (3b-HSD)-like, subgroup1, extended (e) SDRs

 Score = 46.3 bits (110), Expect = 9e-06
 Identities = 76/305 (24%), Positives = 122/305 (40%), Gaps = 55/305 (18%)

Query: 8   VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH 67
           V +TGG G+    L   L   G  V          E            LP   E ++   
Sbjct: 2   VLITGGGGYFGFRLGCALAKSGVHVILFDIRRPQQE------------LP---EGIKFIQ 46

Query: 68  ADLSHPDGFDAAIAGCTGVLHVAT-PVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVK 126
           AD+      + A+AG   V H+A+  +   ++   E+I +  + GT  I++ C++   V 
Sbjct: 47  ADVRDLSQLEKAVAGVDCVFHIASYGMSGREQLNRELIEEINVRGTENIIQVCVRR-RVP 105

Query: 127 RVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH 186
           R++YTS+   +F   + +   DE+    + Y+  LD     Y+ +K++ E+  L+ A   
Sbjct: 106 RLIYTSTFNVIF-GGQPIRNGDES----LPYL-PLDLHVDHYSRTKSIAEQLVLK-ANNM 158

Query: 187 GLD-----LVT--LIPSMVVGP---FICPKFAGSVRSSLALILGNREEYG-FLLNTSMVH 235
            L      L T  L P+ + GP      P+    +   L + +     YG        VH
Sbjct: 159 PLPNNGGVLRTCALRPAGIYGPGEQRHLPRIVSYIEKGLFMFV-----YGDPKSLVEFVH 213

Query: 236 VDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYP----EYPIPTVDSLAEIE 291
           VD++ +AHI   E       YI S         A F+S   P    E+  P V+ L    
Sbjct: 214 VDNLVQAHILAAEALTTAKGYIASGQ-------AYFISDGRPVNNFEFFRPLVEGL---- 262

Query: 292 GYRAP 296
           GY  P
Sbjct: 263 GYSFP 267

An uncharacterized subgroup of the 3b-HSD-like extended-SDR family. Proteins in this subgroup have the characteristic active site tetrad and NAD(P)-binding motif of extended-SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 339

>gnl|CDD|177883 PLN02240, PLN02240, UDP-glucose 4-epimerase

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 11/95 (11%)

Query: 1  MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSF--LKNLPG 58
          M      + VTGG G+I S  +++LL  GY V   V   LD    NS + +   +K L G
Sbjct: 1  MSLMGRTILVTGGAGYIGSHTVLQLLLAGYKV--VVIDNLD----NSSEEALRRVKELAG 54

Query: 59 A-SERLRIFHADLSHPDGFDAAIAGCT--GVLHVA 90
             + L     DL   +  +   A      V+H A
Sbjct: 55 DLGDNLVFHKVDLRDKEALEKVFASTRFDAVIHFA 89

Length = 352

>gnl|CDD|178047 PLN02427, PLN02427, UDP-apiose/xylose synthase

 Score = 43.3 bits (102), Expect = 9e-05
 Identities = 78/328 (23%), Positives = 134/328 (40%), Gaps = 71/328 (21%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGA---SERL 63
            +C+ G  GFI S L  +L+      T T    L  +  N K    L+  P     S R+
Sbjct: 16  TICMIGAGGFIGSHLCEKLM------TETPHKVLALDVYNDKIKHLLE--PDTVPWSGRI 67

Query: 64  RIFHADLSHPDGFDAAIAGCTGVLHVA---TPVDFEDKEPEEVITQRAINGTLGILKSCL 120
           +    ++ H    +  I      +++A   TP D+  + P + I    I+  L ++K C 
Sbjct: 68  QFHRINIKHDSRLEGLIKMADLTINLAAICTPADYNTR-PLDTIYSNFIDA-LPVVKYCS 125

Query: 121 KSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVD-YIRKLDS------------WGKS 167
           ++   KR+++ S+              D     D   Y+ K D             W  S
Sbjct: 126 ENN--KRLIHFSTCEVYGKTIGSFLPKDHPLRQDPAFYVLKEDESPCIFGSIEKQRW--S 181

Query: 168 YAISKTLTERAALEFAE--EHGLDLVTLIPSMVVGP---FI---------CPK----FAG 209
           YA +K L ER  L +AE  E+GL+   + P   +GP   FI          P+    F+ 
Sbjct: 182 YACAKQLIER--LIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSN 239

Query: 210 SV--RSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDAKGRYICS----SHTL 263
           ++  R  L L+ G + +  F      V++ D   A + ++E P     +I +    ++ +
Sbjct: 240 NLLRREPLKLVDGGQSQRTF------VYIKDAIEAVLLMIENPARANGHIFNVGNPNNEV 293

Query: 264 TIQEMAEFLSAKY------PEYPIPTVD 285
           T++++AE ++  Y      P    PTVD
Sbjct: 294 TVRQLAEMMTEVYAKVSGEPALEEPTVD 321

Length = 386

>gnl|CDD|187562 cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 40/150 (26%), Positives = 64/150 (42%), Gaps = 26/150 (17%)

Query: 3   EGKGRVCVTGGTGFIASWLIMRLLD-----HGYSVTTTVRSELDPEHRNSKDLSFLKNLP 57
           +GK RV VTG TGF  SWL + L +      GYS+         P      +L       
Sbjct: 3   QGK-RVLVTGHTGFKGSWLSLWLQELGAKVIGYSLDPPTN----PNLFELANLD------ 51

Query: 58  GASERLRIFHADLSHPDGFDAAIAGCTG--VLHVA--TPVDFEDKEPEEVITQRAINGTL 113
               ++     D+   +    AI       V H+A    V    K+P E   +  + GT+
Sbjct: 52  ---NKISSTRGDIRDLNALREAIREYEPEIVFHLAAQPLVRLSYKDPVETF-ETNVMGTV 107

Query: 114 GILKSCLKSGTVKRVVYTSSNAAVFYNDKD 143
            +L++  ++G+VK VV  +S+    Y +K+
Sbjct: 108 NLLEAIRETGSVKAVVNVTSDKC--YENKE 135

This subgroup contains CDP-D-glucose 4,6-dehydratase, an extended SDR, which catalyzes the conversion of CDP-D-glucose to CDP-4-keto-6-deoxy-D-glucose. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 336

>gnl|CDD|187643 cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 39/146 (26%), Positives = 59/146 (40%), Gaps = 18/146 (12%)

Query: 8   VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH 67
           V +TGG+  I   L   L+  G +V    RSE   E    +++    N  G   ++    
Sbjct: 4   VLITGGSSGIGKALAKELVKEGANVIIVARSESKLEEA-VEEIEAEANASGQ--KVSYIS 60

Query: 68  ADLSHPDGFDAAIAGCTG-------VLHVA---TPVDFEDKEPEEVITQRAIN--GTLGI 115
           ADLS  +  + A A           V++ A    P  FED   EE      +N  G+L +
Sbjct: 61  ADLSDYEEVEQAFAQAVEKGGPPDLVVNCAGISIPGLFEDLTAEEFERGMDVNYFGSLNV 120

Query: 116 LKSCL---KSGTVKRVVYTSSNAAVF 138
             + L   K      +V+ SS AA+ 
Sbjct: 121 AHAVLPLMKEQRPGHIVFVSSQAALV 146

These proteins include members identified as KDSR, ribitol type dehydrogenase, and others. The group shows strong conservation of the active site tetrad and glycine rich NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 239

>gnl|CDD|187542 cd05231, NmrA_TMR_like_1_SDR_a, NmrA (a transcriptional regulator) and triphenylmethane reductase (TMR) like proteins, subgroup 1, atypical (a) SDRs

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 69/271 (25%), Positives = 89/271 (32%), Gaps = 63/271 (23%)

Query: 10  VTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHAD 69
           VTG TG I S +   LL+ G  V   VRS         +  + L    GA     +   D
Sbjct: 3   VTGATGRIGSKVATTLLEAGRPVRALVRS--------DERAAALAAR-GA----EVVVGD 49

Query: 70  LSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVV 129
           L  P    AA+AG   V  +A P    D  P  V    A         S L+   VKRVV
Sbjct: 50  LDDPAVLAAALAGVDAVFFLAPPAPTADARPGYVQAAEAF-------ASALREAGVKRVV 102

Query: 130 YTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLD 189
             SS  A        D    +       IR    W         L E+         GL 
Sbjct: 103 NLSSVGA--------DPESPS-----GLIR--GHW---------LMEQV----LNWAGLP 134

Query: 190 LVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFL---LNTSMVHVDDVARAHIFL 246
           +V L P+          F  ++ S    I                  +  DD+AR    L
Sbjct: 135 VVHLRPAW---------FMENLLSQAPSIRKAGVLALPFPGDGRLPPIATDDIARVAAKL 185

Query: 247 LEYPDAKG---RYICSSHTLTIQEMAEFLSA 274
           L  P+  G     +     LT+ E+A  LS 
Sbjct: 186 LLDPEWHGHRVYELTGPEDLTMNEIAAALSR 216

Atypical SDRs related to NMRa, TMR, and HSCARG (an NADPH sensor). This subgroup resembles the SDRs and has a partially conserved characteristic [ST]GXXGXXG NAD-binding motif, but lacks the conserved active site residues. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 259

>gnl|CDD|187660 cd08957, WbmH_like_SDR_e, Bordetella bronchiseptica enzymes WbmH and WbmG-like, extended (e) SDRs

 Score = 40.6 bits (95), Expect = 7e-04
 Identities = 59/202 (29%), Positives = 86/202 (42%), Gaps = 39/202 (19%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVT-----TTVRSELDPEHRNSKDLSFLKNLPGASE 61
           +V +TGG G I S LI  LL+ G+ V       T R E  P+H N   L+ ++       
Sbjct: 2   KVLITGGAGQIGSHLIEHLLERGHQVVVIDNFATGRREHLPDHPN---LTVVEGSIADKA 58

Query: 62  RLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAIN--GTLGILKSC 119
            +     D   PD           V+H A       K+P++       N  G   ++++ 
Sbjct: 59  LVDKLFGDFK-PDA----------VVHTAAAY----KDPDDWYEDTLTNVVGGANVVQAA 103

Query: 120 LKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAA 179
            K+G VKR++Y  +  A+ Y  K   M        +D+ R     G SYAISKT  E   
Sbjct: 104 KKAG-VKRLIYFQT--ALCYGLKP--MQQPIR---LDHPR--APPGSSYAISKTAGE--- 150

Query: 180 LEFAEEHGLDLVTLIPSMVVGP 201
             + E  G+D VT   + V GP
Sbjct: 151 -YYLELSGVDFVTFRLANVTGP 171

Bordetella bronchiseptica enzymes WbmH and WbmG, and related proteins. This subgroup exhibits the active site tetrad and NAD-binding motif of the extended SDR family. It has been proposed that the active site in Bordetella WbmG and WbmH cannot function as an epimerase, and that it plays a role in O-antigen synthesis pathway from UDP-2,3-diacetamido-2,3-dideoxy-l-galacturonic acid. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 307

>gnl|CDD|219957 pfam08659, KR, KR domain

 Score = 39.0 bits (92), Expect = 0.001
 Identities = 33/149 (22%), Positives = 49/149 (32%), Gaps = 24/149 (16%)

Query: 6   GRVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERL 63
           G   VTGG G +   L   L + G  + V  +     DPE       + L  L      +
Sbjct: 1   GTYLVTGGLGGLGLELARWLAERGARHLVLLSRSGAPDPEAE-----ALLAELEARGAEV 55

Query: 64  RIFHADLSHPDGFDAAIAGC-------TGVLHVATPVD---FEDKEPEEVITQRA----I 109
            +   D+S  D   A +A          GV+H A  +      +   E+    R     +
Sbjct: 56  TVVACDVSDRDAVRALLAEIRADGPPLRGVIHAAGVLRDALLANMTAEDF--ARVLAPKV 113

Query: 110 NGTLGILKSCLKSGTVKRVVYTSSNAAVF 138
            G    L    +   +   V  SS A V 
Sbjct: 114 TGAW-NLHEATRDRPLDFFVLFSSIAGVL 141

This enzymatic domain is part of bacterial polyketide synthases and catalyzes the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. Length = 181

>gnl|CDD|182639 PRK10675, PRK10675, UDP-galactose-4-epimerase; Provisional

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 45/156 (28%), Positives = 66/156 (42%), Gaps = 28/156 (17%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVT------TTVRSELDPEHRNSKDLSFLKNLPGAS 60
           RV VTGG+G+I S   ++LL +G+ V        + RS L    R              +
Sbjct: 2   RVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61

Query: 61  ERL--RIFHADLSHPDGFDAAI--AGCTGV-LHVATPVDFEDKEPEEVITQRAINGTLGI 115
           E L   I H    H    D  I  AG   V   V  P+++ D           +NGTL  
Sbjct: 62  EALLTEILHD---HA--IDTVIHFAGLKAVGESVQKPLEYYDNN---------VNGTL-R 106

Query: 116 LKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETF 151
           L S +++  VK ++++SS  A  Y D+      E+F
Sbjct: 107 LISAMRAANVKNLIFSSS--ATVYGDQPKIPYVESF 140

Length = 338

>gnl|CDD|187586 cd05325, carb_red_sniffer_like_SDR_c, carbonyl reductase sniffer-like, classical (c) SDRs

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 49/220 (22%), Positives = 74/220 (33%), Gaps = 55/220 (25%)

Query: 45  RNSKDLSFLKNLPGASERLRIFHADLSHP--------------DGFDAAIAGCTGVLHVA 90
           R+    + L  L  +  RL I   D++                 G D  I    G+LH  
Sbjct: 31  RDPSAATELAALGASHSRLHILELDVTDEIAESAEAVAERLGDAGLDVLIN-NAGILHSY 89

Query: 91  TPVDFEDKEPEEVITQRAIN--GTLGILKSC---LKSGTVKRVVYTSSNAAVFYNDKDVD 145
            P    D   E+++    +N  G L + ++    L  G   +++  SS          + 
Sbjct: 90  GPASEVD--SEDLLEVFQVNVLGPLLLTQAFLPLLLKGARAKIINISSRVG------SIG 141

Query: 146 MMDETFWSDVDYIRKLDSWGKSYAISKT----LTERAALEFAEEHGLDLVTLIPSMV--- 198
                             W  SY  SK     LT+  A+E  +  G+ +V+L P  V   
Sbjct: 142 DNT------------SGGWY-SYRASKAALNMLTKSLAVEL-KRDGITVVSLHPGWVRTD 187

Query: 199 -VGPFICPKF----AGSVRSSLALILGNREEY-GFLLNTS 232
             GPF   K       SV   L +I    EE  G  L+  
Sbjct: 188 MGGPFAKNKGPITPEESVAGLLKVIDNLNEEDSGKFLDYD 227

Sniffer is an NADPH-dependent carbonyl reductase of the classical SDR family. Studies in Drosophila melanogaster implicate Sniffer in the prevention of neurodegeneration due to aging and oxidative-stress. This subgroup also includes Rhodococcus sp. AD45 IsoH, which is an NAD-dependent 1-hydroxy-2-glutathionyl-2-methyl-3-butene dehydrogenase involved in isoprene metabolism, Aspergillus nidulans StcE encoded by a gene which is part of a proposed sterigmatocystin biosynthesis gene cluster, Bacillus circulans SANK 72073 BtrF encoded by a gene found in the butirosin biosynthesis gene cluster, and Aspergillus parasiticus nor-1 involved in the biosynthesis of aflatoxins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 233

>gnl|CDD|187564 cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs

 Score = 39.1 bits (92), Expect = 0.002
 Identities = 61/278 (21%), Positives = 105/278 (37%), Gaps = 54/278 (19%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
           ++ +TG TG +   L+  L + GY V  T RS                       R  +F
Sbjct: 1   KILITGATGMLGRALVRLLKERGYEVIGTGRS-----------------------RASLF 37

Query: 67  HADLSHPDGFDAAIAGC--TGVLHVA--TPVDFEDKEPEEVITQRAIN--GTLGILKSCL 120
             DL+ PD  + AI       +++ A  T VD  + +PE       +N      + ++  
Sbjct: 38  KLDLTDPDAVEEAIRDYKPDVIINCAAYTRVDKCESDPELAY---RVNVLAPENLARAAK 94

Query: 121 KSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAAL 180
           + G   R+++ S++  VF   K         + + D    L+ +GK    SK L E A L
Sbjct: 95  EVGA--RLIHISTD-YVFDGKK-------GPYKEEDAPNPLNVYGK----SKLLGEVAVL 140

Query: 181 EFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFL-LNTSMVHVDDV 239
                +    + L  S + G     +    V   L L    +E         S  +  D+
Sbjct: 141 NANPRY----LILRTSWLYGELKNGE--NFVEWMLRLAAERKEVNVVHDQIGSPTYAADL 194

Query: 240 ARAHIFLLEYPDAKGRY-ICSSHTLTIQEMAEFLSAKY 276
           A A + L+E     G Y + +S  ++  E A+ ++   
Sbjct: 195 ADAILELIERNSLTGIYHLSNSGPISKYEFAKLIADAL 232

dTDP-6-deoxy-L-lyxo-4-hexulose reductase, an extended SDR, synthesizes dTDP-L-rhamnose from alpha-D-glucose-1-phosphate, providing the precursor of L-rhamnose, an essential cell wall component of many pathogenic bacteria. This subgroup has the characteristic active site tetrad and NADP-binding motif. This subgroup also contains human MAT2B, the regulatory subunit of methionine adenosyltransferase (MAT); MAT catalyzes S-adenosylmethionine synthesis. The human gene encoding MAT2B encodes two major splicing variants which are induced in human cell liver cancer and regulate HuR, an mRNA-binding protein which stabilizes the mRNA of several cyclins, to affect cell proliferation. Both MAT2B variants include this extended SDR domain. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 280

>gnl|CDD|212491 cd05233, SDR_c, classical (c) SDRs

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 54/263 (20%), Positives = 84/263 (31%), Gaps = 65/263 (24%)

Query: 8   VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH 67
             VTG +  I   +  RL   G  V            RN + L+ L  +           
Sbjct: 1   ALVTGASSGIGRAIARRLAREGAKVVLA--------DRNEEALAELAAIEALGGNAVAVQ 52

Query: 68  ADLSHPDGFDAAIAGCT---GVLHV-------ATPVDFEDKEPEEVITQRAIN--GTLGI 115
           AD+S  +  +A +       G L +       A P   E+   E+      +N  G   +
Sbjct: 53  ADVSDEEDVEALVEEALEEFGRLDILVNNAGIARPGPLEELTDEDWDRVLDVNLTGVFLL 112

Query: 116 LKSCLK------SGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYA 169
            ++ L        G   R+V  SS A +                     R L     +YA
Sbjct: 113 TRAALPHMKKQGGG---RIVNISSVAGL---------------------RPLPGQA-AYA 147

Query: 170 ISK----TLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEY 225
            SK     LT   ALE A  +G+ +  + P +V  P +           LA  +      
Sbjct: 148 ASKAALEGLTRSLALELA-PYGIRVNAVAPGLVDTPMLAKLGPEEAEKELAAAIPLGR-- 204

Query: 226 GFLLNTSMVHVDDVARAHIFLLE 248
                  +   ++VA A +FL  
Sbjct: 205 -------LGTPEEVAEAVVFLAS 220

SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 234

>gnl|CDD|187651 cd08947, NmrA_TMR_like_SDR_a, NmrA (a transcriptional regulator), HSCARG (an NADPH sensor), and triphenylmethane reductase (TMR) like proteins, atypical (a) SDRs

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 26/129 (20%), Positives = 45/129 (34%), Gaps = 22/129 (17%)

Query: 8   VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH 67
           + VTG TG     +I  LL       + VR+ +    RN +  + L    G      +  
Sbjct: 1   IAVTGATGQQGGSVIRHLLA---KGASQVRAVV----RNVEKAATLA-DQGVE----VRQ 48

Query: 68  ADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKR 127
            D + P+    A AG + +  +  P    D   E    +        +  +  ++G  K 
Sbjct: 49  GDYNQPELLQKAFAGASKLFIITGPH--YDNTLEIKQGK-------NVADAARRAGV-KH 98

Query: 128 VVYTSSNAA 136
           +  T    A
Sbjct: 99  IYSTGYAFA 107

Atypical SDRs belonging to this subgroup include NmrA, HSCARG, and TMR, these proteins bind NAD(P) but they lack the usual catalytic residues of the SDRs. Atypical SDRs are distinct from classical SDRs. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. TMR, an NADP-binding protein, lacks the active site residues of the SDRs but has a glycine rich NAD(P)-binding motif that matches the extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 224

>gnl|CDD|187555 cd05244, BVR-B_like_SDR_a, biliverdin IX beta reductase (BVR-B, aka flavin reductase)-like proteins; atypical (a) SDRs

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 24/142 (16%)

Query: 10  VTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHAD 69
           + G TG   S ++   L  G+ VT  VR   DP    ++            E+L++   D
Sbjct: 4   IIGATGRTGSAIVREALARGHEVTALVR---DPAKLPAEH-----------EKLKVVQGD 49

Query: 70  LSHPDGFDAAIAGCTGVLH-VATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRV 128
           +   +    A+ G   V+  + T  D                GT  I+ S +K+  VKR+
Sbjct: 50  VLDLEDVKEALEGQDAVISALGTRNDLSP--TTLHSE-----GTRNIV-SAMKAAGVKRL 101

Query: 129 VYTSSNAAVFYNDKDVDMMDET 150
           +     A    +   V ++ +T
Sbjct: 102 IVVGG-AGSLDDRPKVTLVLDT 122

Human BVR-B catalyzes pyridine nucleotide-dependent production of bilirubin-IX beta during fetal development; in the adult BVR-B has flavin and ferric reductase activities. Human BVR-B catalyzes the reduction of FMN, FAD, and riboflavin. Recognition of flavin occurs mostly by hydrophobic interactions, accounting for the broad substrate specificity. Atypical SDRs are distinct from classical SDRs. BVR-B does not share the key catalytic triad, or conserved tyrosine typical of SDRs. The glycine-rich NADP-binding motif of BVR-B is GXXGXXG, which is similar but not identical to the pattern seen in extended SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 207

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	331
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	100.0
PLN02650	351	dihydroflavonol-4-reductase	100.0
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	100.0
COG1088	340	RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope	100.0
PLN00198	338	anthocyanidin reductase; Provisional	100.0
PLN02214	342	cinnamoyl-CoA reductase	100.0
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	100.0
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	100.0
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	100.0
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	100.0
PLN02896	353	cinnamyl-alcohol dehydrogenase	100.0
PLN02427	386	UDP-apiose/xylose synthase	100.0
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	100.0
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	100.0
PLN02166	436	dTDP-glucose 4,6-dehydratase	100.0
PLN02572	442	UDP-sulfoquinovose synthase	100.0
PLN02206	442	UDP-glucuronate decarboxylase	100.0
PLN02695	370	GDP-D-mannose-3',5'-epimerase	100.0
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	100.0
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	100.0
KOG0747	331	consensus Putative NAD+-dependent epimerases [Carb	100.0
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	100.0
PLN02653	340	GDP-mannose 4,6-dehydratase	100.0
PLN02260	668	probable rhamnose biosynthetic enzyme	100.0
PLN02240	352	UDP-glucose 4-epimerase	100.0
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	100.0
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	100.0
KOG1429	350	consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro	100.0
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	100.0
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	100.0
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	100.0
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	100.0
PRK10675	338	UDP-galactose-4-epimerase; Provisional	100.0
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	100.0
PLN02583	297	cinnamoyl-CoA reductase	100.0
KOG1371	343	consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo	100.0
PLN02686	367	cinnamoyl-CoA reductase	100.0
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	100.0
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	100.0
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	100.0
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	100.0
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	100.0
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	100.0
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	100.0
PLN00016	378	RNA-binding protein; Provisional	100.0
COG1089	345	Gmd GDP-D-mannose dehydratase [Cell envelope bioge	100.0
KOG1431	315	consensus GDP-L-fucose synthetase [Carbohydrate tr	100.0
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	100.0
KOG1430	361	consensus C-3 sterol dehydrogenase/3-beta-hydroxys	100.0
PRK05865	854	hypothetical protein; Provisional	100.0
CHL00194	317	ycf39 Ycf39; Provisional	100.0
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	100.0
PLN02996	491	fatty acyl-CoA reductase	100.0
PLN02778	298	3,5-epimerase/4-reductase	100.0
PRK07201	657	short chain dehydrogenase; Provisional	100.0
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	99.98
TIGR01746	367	Thioester-redct thioester reductase domain. It has	99.97
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	99.97
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	99.97
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	99.97
PLN02260	668	probable rhamnose biosynthetic enzyme	99.96
PF07993	249	NAD_binding_4: Male sterility protein; InterPro: I	99.96
PLN02503	605	fatty acyl-CoA reductase 2	99.96
KOG1372	376	consensus GDP-mannose 4,6 dehydratase [Carbohydrat	99.96
PRK12320	699	hypothetical protein; Provisional	99.96
COG3320	382	Putative dehydrogenase domain of multifunctional n	99.95
PRK06482	276	short chain dehydrogenase; Provisional	99.94
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	99.94
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	99.93
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	99.93
KOG2865	391	consensus NADH:ubiquinone oxidoreductase, NDUFA9/3	99.92
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	99.92
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	99.92
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.91
PRK09135	249	pteridine reductase; Provisional	99.91
PRK06180	277	short chain dehydrogenase; Provisional	99.91
PRK07806	248	short chain dehydrogenase; Provisional	99.91
PRK08263	275	short chain dehydrogenase; Provisional	99.91
PLN03209	576	translocon at the inner envelope of chloroplast su	99.91
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	99.9
PRK07775	274	short chain dehydrogenase; Provisional	99.9
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	99.9
PRK06914	280	short chain dehydrogenase; Provisional	99.9
PRK05875	276	short chain dehydrogenase; Provisional	99.9
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	99.9
KOG2774	366	consensus NAD dependent epimerase [General functio	99.9
PRK07074	257	short chain dehydrogenase; Provisional	99.9
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	99.9
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.89
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.89
PRK07067	257	sorbitol dehydrogenase; Provisional	99.89
KOG1221	467	consensus Acyl-CoA reductase [Lipid transport and	99.89
PRK07774	250	short chain dehydrogenase; Provisional	99.89
PRK06138	252	short chain dehydrogenase; Provisional	99.89
PRK12746	254	short chain dehydrogenase; Provisional	99.89
PRK12935	247	acetoacetyl-CoA reductase; Provisional	99.89
PRK06182	273	short chain dehydrogenase; Validated	99.89
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.88
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.88
PRK08219	227	short chain dehydrogenase; Provisional	99.88
PRK07523	255	gluconate 5-dehydrogenase; Provisional	99.88
PRK12829	264	short chain dehydrogenase; Provisional	99.88
PRK12828	239	short chain dehydrogenase; Provisional	99.88
PRK06179	270	short chain dehydrogenase; Provisional	99.87
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	99.87
PRK06128	300	oxidoreductase; Provisional	99.87
PRK06194	287	hypothetical protein; Provisional	99.87
PRK12827	249	short chain dehydrogenase; Provisional	99.87
PRK05993	277	short chain dehydrogenase; Provisional	99.87
PRK05876	275	short chain dehydrogenase; Provisional	99.87
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.87
PRK07890	258	short chain dehydrogenase; Provisional	99.87
PRK07060	245	short chain dehydrogenase; Provisional	99.87
PRK08628	258	short chain dehydrogenase; Provisional	99.87
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	99.87
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	99.86
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	99.86
PRK06701	290	short chain dehydrogenase; Provisional	99.86
PRK06123	248	short chain dehydrogenase; Provisional	99.86
PRK05717	255	oxidoreductase; Validated	99.86
PLN02253	280	xanthoxin dehydrogenase	99.86
PRK09186	256	flagellin modification protein A; Provisional	99.86
PRK09134	258	short chain dehydrogenase; Provisional	99.86
PRK10538	248	malonic semialdehyde reductase; Provisional	99.86
PRK12937	245	short chain dehydrogenase; Provisional	99.85
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.85
PRK06500	249	short chain dehydrogenase; Provisional	99.85
PRK06181	263	short chain dehydrogenase; Provisional	99.85
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	99.85
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.85
PRK07024	257	short chain dehydrogenase; Provisional	99.85
PRK07453	322	protochlorophyllide oxidoreductase; Validated	99.85
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	99.85
PRK12939	250	short chain dehydrogenase; Provisional	99.85
PRK06841	255	short chain dehydrogenase; Provisional	99.85
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	99.85
PRK07985	294	oxidoreductase; Provisional	99.85
PRK08264	238	short chain dehydrogenase; Validated	99.85
PRK08213	259	gluconate 5-dehydrogenase; Provisional	99.85
PRK06523	260	short chain dehydrogenase; Provisional	99.85
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	99.85
PRK06196	315	oxidoreductase; Provisional	99.84
PRK07577	234	short chain dehydrogenase; Provisional	99.84
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.84
PRK07454	241	short chain dehydrogenase; Provisional	99.84
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.84
PRK12743	256	oxidoreductase; Provisional	99.84
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.84
PRK12824	245	acetoacetyl-CoA reductase; Provisional	99.84
PRK07825	273	short chain dehydrogenase; Provisional	99.84
PRK06114	254	short chain dehydrogenase; Provisional	99.84
PRK09291	257	short chain dehydrogenase; Provisional	99.84
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	99.83
PRK06947	248	glucose-1-dehydrogenase; Provisional	99.83
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	99.83
PRK07478	254	short chain dehydrogenase; Provisional	99.83
PRK08085	254	gluconate 5-dehydrogenase; Provisional	99.83
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	99.83
PRK06398	258	aldose dehydrogenase; Validated	99.83
PRK07856	252	short chain dehydrogenase; Provisional	99.83
PRK12747	252	short chain dehydrogenase; Provisional	99.83
PRK07035	252	short chain dehydrogenase; Provisional	99.83
PRK08265	261	short chain dehydrogenase; Provisional	99.83
PRK06101	240	short chain dehydrogenase; Provisional	99.83
PRK08643	256	acetoin reductase; Validated	99.83
PRK07814	263	short chain dehydrogenase; Provisional	99.83
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.83
PRK12744	257	short chain dehydrogenase; Provisional	99.83
PRK08017	256	oxidoreductase; Provisional	99.83
PRK06124	256	gluconate 5-dehydrogenase; Provisional	99.83
PRK07063	260	short chain dehydrogenase; Provisional	99.83
PRK08324	681	short chain dehydrogenase; Validated	99.82
PRK05693	274	short chain dehydrogenase; Provisional	99.82
PRK05650	270	short chain dehydrogenase; Provisional	99.82
PRK08251	248	short chain dehydrogenase; Provisional	99.82
PRK08589	272	short chain dehydrogenase; Validated	99.82
PRK07041	230	short chain dehydrogenase; Provisional	99.82
PRK08267	260	short chain dehydrogenase; Provisional	99.82
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	99.82
PRK07069	251	short chain dehydrogenase; Validated	99.82
PRK07326	237	short chain dehydrogenase; Provisional	99.82
PRK06057	255	short chain dehydrogenase; Provisional	99.82
PRK12938	246	acetyacetyl-CoA reductase; Provisional	99.82
PRK06197	306	short chain dehydrogenase; Provisional	99.82
PRK08278	273	short chain dehydrogenase; Provisional	99.82
PRK06949	258	short chain dehydrogenase; Provisional	99.82
PRK08277	278	D-mannonate oxidoreductase; Provisional	99.82
PRK09242	257	tropinone reductase; Provisional	99.82
PRK06172	253	short chain dehydrogenase; Provisional	99.82
PRK07109	334	short chain dehydrogenase; Provisional	99.81
PRK05867	253	short chain dehydrogenase; Provisional	99.81
PRK12742	237	oxidoreductase; Provisional	99.81
PRK07102	243	short chain dehydrogenase; Provisional	99.81
PRK05866	293	short chain dehydrogenase; Provisional	99.81
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.81
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	99.81
PRK08226	263	short chain dehydrogenase; Provisional	99.81
PRK07904	253	short chain dehydrogenase; Provisional	99.81
PRK07097	265	gluconate 5-dehydrogenase; Provisional	99.81
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	99.8
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	99.8
PRK09072	263	short chain dehydrogenase; Provisional	99.8
PRK06198	260	short chain dehydrogenase; Provisional	99.8
PRK07576	264	short chain dehydrogenase; Provisional	99.8
COG0300	265	DltE Short-chain dehydrogenases of various substra	99.8
PRK07677	252	short chain dehydrogenase; Provisional	99.8
PRK07023	243	short chain dehydrogenase; Provisional	99.79
PRK06924	251	short chain dehydrogenase; Provisional	99.79
PRK05872	296	short chain dehydrogenase; Provisional	99.79
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	99.79
PRK06139	330	short chain dehydrogenase; Provisional	99.79
PRK08339	263	short chain dehydrogenase; Provisional	99.79
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	99.79
PRK06483	236	dihydromonapterin reductase; Provisional	99.79
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.78
PRK08703	239	short chain dehydrogenase; Provisional	99.78
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	99.78
PRK08936	261	glucose-1-dehydrogenase; Provisional	99.78
TIGR02415	254	23BDH acetoin reductases. One member of this famil	99.78
PRK07062	265	short chain dehydrogenase; Provisional	99.77
PRK06953	222	short chain dehydrogenase; Provisional	99.77
PRK06484	520	short chain dehydrogenase; Validated	99.77
PRK08340	259	glucose-1-dehydrogenase; Provisional	99.77
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	99.77
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	99.77
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	99.77
COG2910	211	Putative NADH-flavin reductase [General function p	99.77
TIGR01831	239	fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas	99.77
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	99.77
PRK05854	313	short chain dehydrogenase; Provisional	99.76
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	99.76
PRK07578	199	short chain dehydrogenase; Provisional	99.76
PRK06940	275	short chain dehydrogenase; Provisional	99.76
PRK07832	272	short chain dehydrogenase; Provisional	99.76
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	99.75
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.75
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	99.75
PRK07831	262	short chain dehydrogenase; Provisional	99.75
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	99.75
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	99.74
PRK05884	223	short chain dehydrogenase; Provisional	99.74
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.74
PRK08177	225	short chain dehydrogenase; Provisional	99.74
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	99.73
PRK05855	582	short chain dehydrogenase; Validated	99.73
PRK06125	259	short chain dehydrogenase; Provisional	99.73
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	99.73
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	99.73
PRK07201	657	short chain dehydrogenase; Provisional	99.72
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	99.72
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	99.72
PRK07791	286	short chain dehydrogenase; Provisional	99.71
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	99.71
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	99.71
PRK12367	245	short chain dehydrogenase; Provisional	99.71
PRK06484	520	short chain dehydrogenase; Validated	99.71
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	99.7
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.7
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	99.7
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	99.69
TIGR01500	256	sepiapter_red sepiapterin reductase. This model de	99.69
PLN02780	320	ketoreductase/ oxidoreductase	99.68
PRK09009	235	C factor cell-cell signaling protein; Provisional	99.68
smart00822	180	PKS_KR This enzymatic domain is part of bacterial	99.68
PRK05599	246	hypothetical protein; Provisional	99.68
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	99.68
KOG3019	315	consensus Predicted nucleoside-diphosphate sugar e	99.68
KOG0725	270	consensus Reductases with broad range of substrate	99.64
PRK08862	227	short chain dehydrogenase; Provisional	99.63
PRK08303	305	short chain dehydrogenase; Provisional	99.63
PLN00015	308	protochlorophyllide reductase	99.63
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	99.62
KOG1200	256	consensus Mitochondrial/plastidial beta-ketoacyl-A	99.61
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	99.6
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	99.6
KOG1208	314	consensus Dehydrogenases with different specificit	99.55
KOG4039	238	consensus Serine/threonine kinase TIP30/CC3 [Signa	99.55
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	99.54
KOG1203	411	consensus Predicted dehydrogenase [Carbohydrate tr	99.54
KOG4169	261	consensus 15-hydroxyprostaglandin dehydrogenase an	99.52
PRK12428	241	3-alpha-hydroxysteroid dehydrogenase; Provisional	99.52
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	99.52
KOG4288	283	consensus Predicted oxidoreductase [General functi	99.51
COG1028	251	FabG Dehydrogenases with different specificities (	99.47
PF08659	181	KR: KR domain; InterPro: IPR013968 This domain is	99.46
PF13561	241	adh_short_C2: Enoyl-(Acyl carrier protein) reducta	99.46
KOG1610	322	consensus Corticosteroid 11-beta-dehydrogenase and	99.41
KOG1611	249	consensus Predicted short chain-type dehydrogenase	99.41
PRK06300	299	enoyl-(acyl carrier protein) reductase; Provisiona	99.4
KOG1207	245	consensus Diacetyl reductase/L-xylulose reductase	99.39
TIGR02813	2582	omega_3_PfaA polyketide-type polyunsaturated fatty	99.38
KOG1210	331	consensus Predicted 3-ketosphinganine reductase [S	99.37
PTZ00325	321	malate dehydrogenase; Provisional	99.36
PLN00106	323	malate dehydrogenase	99.24
PRK06720	169	hypothetical protein; Provisional	99.14
PRK08309	177	short chain dehydrogenase; Provisional	99.13
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	99.11
KOG1199	260	consensus Short-chain alcohol dehydrogenase/3-hydr	99.08
KOG1204	253	consensus Predicted dehydrogenase [Secondary metab	99.07
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	98.97
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.94
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	98.86
KOG1478	341	consensus 3-keto sterol reductase [Lipid transport	98.85
PRK09620	229	hypothetical protein; Provisional	98.77
PRK05086	312	malate dehydrogenase; Provisional	98.73
COG0623	259	FabI Enoyl-[acyl-carrier-protein]	98.69
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	98.68
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	98.64
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	98.64
PRK06732	229	phosphopantothenate--cysteine ligase; Validated	98.62
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	98.56
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	98.51
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	98.46
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	98.3
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	98.26
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	98.25
KOG2733	423	consensus Uncharacterized membrane protein [Functi	98.24
PRK14982	340	acyl-ACP reductase; Provisional	98.24
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	98.22
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	98.16
PRK05442	326	malate dehydrogenase; Provisional	98.14
PF13950	62	Epimerase_Csub: UDP-glucose 4-epimerase C-term sub	98.05
COG3268	382	Uncharacterized conserved protein [Function unknow	98.04
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	98.0
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	97.99
TIGR02114	227	coaB_strep phosphopantothenate--cysteine ligase, s	97.98
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	97.93
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.91
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	97.89
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.88
PF04127	185	DFP: DNA / pantothenate metabolism flavoprotein; I	97.85
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	97.85
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	97.84
PLN02602	350	lactate dehydrogenase	97.79
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	97.76
PRK06223	307	malate dehydrogenase; Reviewed	97.75
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.74
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	97.73
TIGR00521	390	coaBC_dfp phosphopantothenoylcysteine decarboxylas	97.71
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	97.69
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	97.68
PTZ00082	321	L-lactate dehydrogenase; Provisional	97.67
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	97.66
PLN00112	444	malate dehydrogenase (NADP); Provisional	97.66
PTZ00117	319	malate dehydrogenase; Provisional	97.65
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	97.63
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.59
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	97.59
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	97.54
PRK09496	453	trkA potassium transporter peripheral membrane com	97.53
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	97.46
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	97.45
PRK04148	134	hypothetical protein; Provisional	97.44
PRK00048	257	dihydrodipicolinate reductase; Provisional	97.44
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.43
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	97.42
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	97.4
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	97.36
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	97.35
PLN02383	344	aspartate semialdehyde dehydrogenase	97.29
KOG4022	236	consensus Dihydropteridine reductase DHPR/QDPR [Am	97.27
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	97.27
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	97.25
COG4982	866	3-oxoacyl-[acyl-carrier protein]	97.25
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	97.24
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	97.23
PRK09496	453	trkA potassium transporter peripheral membrane com	97.21
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	97.19
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	97.18
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	97.18
PRK08057	248	cobalt-precorrin-6x reductase; Reviewed	97.16
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	97.16
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	97.16
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	97.09
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	97.04
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	97.0
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	96.98
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.96
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	96.94
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	96.93
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	96.92
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.92
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	96.91
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.91
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	96.9
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.9
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.84
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	96.83
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	96.82
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	96.81
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	96.81
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	96.81
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.76
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	96.74
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.74
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.74
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.72
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.68
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	96.68
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	96.64
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	96.61
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	96.61
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	96.61
PF02571	249	CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro:	96.6
PRK13982	475	bifunctional SbtC-like/phosphopantothenoylcysteine	96.6
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	96.6
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.59
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	96.58
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.53
PRK08328	231	hypothetical protein; Provisional	96.52
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.51
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	96.5
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	96.49
PRK10669	558	putative cation:proton antiport protein; Provision	96.47
PRK13243	333	glyoxylate reductase; Reviewed	96.47
PRK08655	437	prephenate dehydrogenase; Provisional	96.45
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.41
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	96.41
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.4
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	96.38
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.36
PRK08223	287	hypothetical protein; Validated	96.35
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	96.34
PLN02353	473	probable UDP-glucose 6-dehydrogenase	96.33
KOG0172	445	consensus Lysine-ketoglutarate reductase/saccharop	96.33
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	96.32
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	96.31
PRK09288	395	purT phosphoribosylglycinamide formyltransferase 2	96.31
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	96.27
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	96.27
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.26
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	96.24
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	96.21
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	96.2
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	96.2
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.19
KOG1496	332	consensus Malate dehydrogenase [Energy production	96.19
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	96.19
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	96.16
PRK07574	385	formate dehydrogenase; Provisional	96.14
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	96.14
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	96.14
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	96.13
PRK12480	330	D-lactate dehydrogenase; Provisional	96.13
PRK06436	303	glycerate dehydrogenase; Provisional	96.13
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	96.12
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.1
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	96.1
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	96.1
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	96.1
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.1
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.09
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	96.08
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	96.08
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	96.08
PRK08818	370	prephenate dehydrogenase; Provisional	96.07
PF08732	410	HIM1: HIM1; InterPro: IPR014843 HIM1 (high inducti	96.01
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	95.99
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.98
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	95.98
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.97
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.94
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	95.91
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	95.91
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	95.9
COG2130	340	Putative NADP-dependent oxidoreductases [General f	95.89
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	95.87
PRK13940	414	glutamyl-tRNA reductase; Provisional	95.86
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	95.83
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.82
PRK07417	279	arogenate dehydrogenase; Reviewed	95.81
PRK03659	601	glutathione-regulated potassium-efflux system prot	95.8
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.77
PRK03562	621	glutathione-regulated potassium-efflux system prot	95.76
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	95.75
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.7
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	95.69
PRK06719	157	precorrin-2 dehydrogenase; Validated	95.67
PRK15116	268	sulfur acceptor protein CsdL; Provisional	95.65
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	95.65
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	95.64
TIGR01142	380	purT phosphoribosylglycinamide formyltransferase 2	95.63
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	95.63
PLN03139	386	formate dehydrogenase; Provisional	95.61
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	95.61
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	95.59
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	95.58
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.57
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	95.57
PLN02928	347	oxidoreductase family protein	95.57
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	95.56
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.55
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	95.47
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.47
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	95.47
PRK06849	389	hypothetical protein; Provisional	95.46
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	95.46
PRK13403	335	ketol-acid reductoisomerase; Provisional	95.44
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	95.41
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	95.41

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=100.00  E-value=2e-50  Score=337.81  Aligned_cols=316  Identities=45%  Similarity=0.760  Sum_probs=269.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      ++++|+|||||||||+++++.|+++||.|++++|++     ++.++...+.++....++...+.+|+.|++++..++.++
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~-----~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gc   79 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDP-----EDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGC   79 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCc-----chhhhHHHHHhcccCcccceEEeccccccchHHHHHhCC
Confidence            567999999999999999999999999999999999     565555566666666677999999999999999999999


Q ss_pred             cEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecC---CCCCCcccCCCCCChhhhhh
Q 020104           84 TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYN---DKDVDMMDETFWSDVDYIRK  160 (331)
Q Consensus        84 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~---~~~~~~~~E~~~~~~~~~~~  160 (331)
                      |.|||+|+++.+...++..+.++..+.|+.|++++|++.+.++|+|++||..+..+.   ......++|+.|.+.+++..
T Consensus        80 dgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~~~~~~  159 (327)
T KOG1502|consen   80 DGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDLDFCRC  159 (327)
T ss_pred             CEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCCCCcccccccCCcHHHHHh
Confidence            999999999987766665589999999999999999999889999999999888644   33456789999998887765


Q ss_pred             cCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHHHHH
Q 020104          161 LDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVA  240 (331)
Q Consensus       161 ~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a  240 (331)
                      ..   +-|..+|..+|+..++++++.+++.+.+-|+.|+||...+.........+..+.|....+.... ..|+|++|+|
T Consensus       160 ~~---~~Y~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~GP~l~~~l~~s~~~~l~~i~G~~~~~~n~~-~~~VdVrDVA  235 (327)
T KOG1502|consen  160 KK---LWYALSKTLAEKAAWEFAKENGLDLVTINPGLVFGPGLQPSLNSSLNALLKLIKGLAETYPNFW-LAFVDVRDVA  235 (327)
T ss_pred             hH---HHHHHHHHHHHHHHHHHHHhCCccEEEecCCceECCCcccccchhHHHHHHHHhcccccCCCCc-eeeEeHHHHH
Confidence            44   5699999999999999999999999999999999999888666666667777777654444333 3599999999


Q ss_pred             HHHHHhhcCCCCCceEEEeccccCHHHHHHHHHhhCCCCCCCCccCCccc--cCCcCcccCcHHHHHcC-CccccChhhh
Q 020104          241 RAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEI--EGYRAPGSSSKKLLDAG-FRYNYGIDEM  317 (331)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~k~~~lg-~~~~~~~~e~  317 (331)
                      +|.+.+++++..+|+|+|.++..++.|+++++.+.+|...+|.  .....  .......++++|++.|| |+++ +++|+
T Consensus       236 ~AHv~a~E~~~a~GRyic~~~~~~~~ei~~~l~~~~P~~~ip~--~~~~~~~~~~~~~~~~~~k~k~lg~~~~~-~l~e~  312 (327)
T KOG1502|consen  236 LAHVLALEKPSAKGRYICVGEVVSIKEIADILRELFPDYPIPK--KNAEEHEGFLTSFKVSSEKLKSLGGFKFR-PLEET  312 (327)
T ss_pred             HHHHHHHcCcccCceEEEecCcccHHHHHHHHHHhCCCCCCCC--CCCccccccccccccccHHHHhcccceec-ChHHH
Confidence            9999999999999999999988889999999999999777665  33332  23334468999998877 7777 99999


Q ss_pred             HHHHHHHHHHcCCC
Q 020104          318 FDEAIQCCKEKGYL  331 (331)
Q Consensus       318 i~~~~~~~~~~~~~  331 (331)
                      +.++++++++.|++
T Consensus       313 ~~dt~~sl~~~~~l  326 (327)
T KOG1502|consen  313 LSDTVESLREKGLL  326 (327)
T ss_pred             HHHHHHHHHHhcCC
Confidence            99999999998875

>PLN02650 dihydroflavonol-4-reductase

Probab=100.00  E-value=3.9e-49  Score=350.00  Aligned_cols=324  Identities=48%  Similarity=0.877  Sum_probs=242.1

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |-+..|+|||||||||||++|+++|+++|++|++++|+.     .....+..+........+++++.+|+.|.+.+.+++
T Consensus         1 ~~~~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~-----~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~   75 (351)
T PLN02650          1 MGSQKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDP-----ANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAI   75 (351)
T ss_pred             CCCCCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCc-----chhHHHHHHHhccCCCCceEEEEecCCChhhHHHHH
Confidence            566678999999999999999999999999999999986     232222222111111135889999999999999999


Q ss_pred             cCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhh
Q 020104           81 AGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRK  160 (331)
Q Consensus        81 ~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~  160 (331)
                      +++|+|||+|+.......++....+++|+.++.+++++|++.+.++||||+||.++|+........++|+++...+...+
T Consensus        76 ~~~d~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~  155 (351)
T PLN02650         76 RGCTGVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRR  155 (351)
T ss_pred             hCCCEEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhc
Confidence            99999999998765433344347889999999999999998754689999999987753222222357776543333223


Q ss_pred             cCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHHHHH
Q 020104          161 LDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVA  240 (331)
Q Consensus       161 ~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a  240 (331)
                      ...|.++|+.+|..+|.+++.++++++++++++||+++|||+........+........+....+.....++|+|++|+|
T Consensus       156 ~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~V~Dva  235 (351)
T PLN02650        156 KKMTGWMYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFISTSMPPSLITALSLITGNEAHYSIIKQGQFVHLDDLC  235 (351)
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCCCCCCCccHHHHHHHhcCCccccCcCCCcceeeHHHHH
Confidence            33456789999999999999999989999999999999999865433332222222233333333333447999999999


Q ss_pred             HHHHHhhcCCCCCceEEEeccccCHHHHHHHHHhhCCCCCCCCccCCccc-cCCcCcccCcHHHHHcCCccccChhhhHH
Q 020104          241 RAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEI-EGYRAPGSSSKKLLDAGFRYNYGIDEMFD  319 (331)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~~~lg~~~~~~~~e~i~  319 (331)
                      ++++++++++..++.|++++..+|+.|+++.+.+..+...++.  ..... ........|++|++.|||+|+++++++|+
T Consensus       236 ~a~~~~l~~~~~~~~~i~~~~~~s~~el~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~d~~k~~~lG~~p~~~l~egl~  313 (351)
T PLN02650        236 NAHIFLFEHPAAEGRYICSSHDATIHDLAKMLREKYPEYNIPA--RFPGIDEDLKSVEFSSKKLTDLGFTFKYSLEDMFD  313 (351)
T ss_pred             HHHHHHhcCcCcCceEEecCCCcCHHHHHHHHHHhCcccCCCC--CCCCcCcccccccCChHHHHHhCCCCCCCHHHHHH
Confidence            9999999887666788888888999999999999887544443  21111 22334567888888899999999999999


Q ss_pred             HHHHHHHHcCCC
Q 020104          320 EAIQCCKEKGYL  331 (331)
Q Consensus       320 ~~~~~~~~~~~~  331 (331)
                      ++++|+++++.+
T Consensus       314 ~~i~~~~~~~~~  325 (351)
T PLN02650        314 GAIETCREKGLI  325 (351)
T ss_pred             HHHHHHHHcCCC
Confidence            999999988764

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=1e-49  Score=324.25  Aligned_cols=293  Identities=22%  Similarity=0.277  Sum_probs=239.0

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--Cc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--GC   83 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~   83 (331)
                      |+||||||+||||+|.+.+|++.|++|++++.-..    +..+.+.+        ..++++++|+.|.+.+.+.++  ++
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~----g~~~~v~~--------~~~~f~~gDi~D~~~L~~vf~~~~i   68 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSN----GHKIALLK--------LQFKFYEGDLLDRALLTAVFEENKI   68 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCC----CCHHHhhh--------ccCceEEeccccHHHHHHHHHhcCC
Confidence            58999999999999999999999999999986541    11122211        116899999999999999996  69


Q ss_pred             cEEEEecccCC--CCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhc
Q 020104           84 TGVLHVATPVD--FEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKL  161 (331)
Q Consensus        84 d~Vih~a~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~  161 (331)
                      |.|||+||...  .+..+|. ++++.|+.+|++|+++|++++ +++|||-||..|||  .+...|++|+.+         
T Consensus        69 daViHFAa~~~VgESv~~Pl-~Yy~NNv~gTl~Ll~am~~~g-v~~~vFSStAavYG--~p~~~PI~E~~~---------  135 (329)
T COG1087          69 DAVVHFAASISVGESVQNPL-KYYDNNVVGTLNLIEAMLQTG-VKKFIFSSTAAVYG--EPTTSPISETSP---------  135 (329)
T ss_pred             CEEEECccccccchhhhCHH-HHHhhchHhHHHHHHHHHHhC-CCEEEEecchhhcC--CCCCcccCCCCC---------
Confidence            99999998655  5566888 999999999999999999999 99999999999995  566689999996         


Q ss_pred             CCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCC-------CccHHHHHHHHhCCCcc---cccC---
Q 020104          162 DSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKF-------AGSVRSSLALILGNREE---YGFL---  228 (331)
Q Consensus       162 ~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~-------~~~~~~~~~~~~~~~~~---~~~~---  228 (331)
                      ..|.||||+||++.|++++.++..+++++++||..++.|....+.+       ..++....+...|+...   +++.   
T Consensus       136 ~~p~NPYG~sKlm~E~iL~d~~~a~~~~~v~LRYFN~aGA~~~G~iGe~~~~~thLip~~~q~A~G~r~~l~ifG~DY~T  215 (329)
T COG1087         136 LAPINPYGRSKLMSEEILRDAAKANPFKVVILRYFNVAGACPDGTLGQRYPGATLLIPVAAEAALGKRDKLFIFGDDYDT  215 (329)
T ss_pred             CCCCCcchhHHHHHHHHHHHHHHhCCCcEEEEEecccccCCCCCccCCCCCCcchHHHHHHHHHhcCCceeEEeCCCCCC
Confidence            3578999999999999999999999999999999999997544322       23455555666666542   2221   


Q ss_pred             -CC---ccceeHHHHHHHHHHhhcCCCCC---ceEEE-eccccCHHHHHHHHHhhCCCCCCCCccCCcc--ccCCcCccc
Q 020104          229 -LN---TSMVHVDDVARAHIFLLEYPDAK---GRYIC-SSHTLTIQEMAEFLSAKYPEYPIPTVDSLAE--IEGYRAPGS  298 (331)
Q Consensus       229 -~~---~~~i~v~D~a~~~~~~~~~~~~~---~~~~~-~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~  298 (331)
                       ..   ||||||.|+|++.+.+++.-..+   .+||+ +|..+|+.|+++.+.+..| .++|.  .+.+  ..+......
T Consensus       216 ~DGT~iRDYIHV~DLA~aH~~Al~~L~~~g~~~~~NLG~G~G~SV~evi~a~~~vtg-~~ip~--~~~~RR~GDpa~l~A  292 (329)
T COG1087         216 KDGTCIRDYIHVDDLADAHVLALKYLKEGGSNNIFNLGSGNGFSVLEVIEAAKKVTG-RDIPV--EIAPRRAGDPAILVA  292 (329)
T ss_pred             CCCCeeeeeeehhHHHHHHHHHHHHHHhCCceeEEEccCCCceeHHHHHHHHHHHhC-CcCce--eeCCCCCCCCceeEe
Confidence             11   79999999999999998743322   47896 5788999999999999998 55555  3332  255667899


Q ss_pred             CcHHH-HHcCCcccc-ChhhhHHHHHHHHH
Q 020104          299 SSKKL-LDAGFRYNY-GIDEMFDEAIQCCK  326 (331)
Q Consensus       299 ~~~k~-~~lg~~~~~-~~~e~i~~~~~~~~  326 (331)
                      |++|+ +.|||+|++ ++++.+++.++|.+
T Consensus       293 d~~kA~~~Lgw~p~~~~L~~ii~~aw~W~~  322 (329)
T COG1087         293 DSSKARQILGWQPTYDDLEDIIKDAWDWHQ  322 (329)
T ss_pred             CHHHHHHHhCCCcccCCHHHHHHHHHHHhh
Confidence            99999 999999999 99999999999998

>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=7.7e-49  Score=317.53  Aligned_cols=305  Identities=19%  Similarity=0.185  Sum_probs=243.8

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCe--EEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYS--VTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      |++|||||+||||++++++++++..+  |+.++.=.      -...+..+..+. ..++..++++|+.|.+.+.+++.  
T Consensus         1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLT------YAgn~~~l~~~~-~~~~~~fv~~DI~D~~~v~~~~~~~   73 (340)
T COG1088           1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLT------YAGNLENLADVE-DSPRYRFVQGDICDRELVDRLFKEY   73 (340)
T ss_pred             CcEEEecCcchHHHHHHHHHHhcCCCceEEEEeccc------ccCCHHHHHhhh-cCCCceEEeccccCHHHHHHHHHhc
Confidence            58999999999999999999988644  45444322      122222222221 23689999999999999999997  


Q ss_pred             CccEEEEecccCC--CCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhh
Q 020104           82 GCTGVLHVATPVD--FEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIR  159 (331)
Q Consensus        82 ~~d~Vih~a~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~  159 (331)
                      .+|+|+|+|+-.+  .+-.+|. .++++|+.||.+|++++++.....||+|+||..|||.-......++|++|.      
T Consensus        74 ~~D~VvhfAAESHVDRSI~~P~-~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~tp~------  146 (340)
T COG1088          74 QPDAVVHFAAESHVDRSIDGPA-PFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTETTPY------  146 (340)
T ss_pred             CCCeEEEechhccccccccChh-hhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcccCCCC------
Confidence            5999999998555  5555676 999999999999999999997234999999999998555555578999863      


Q ss_pred             hcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHH-HHHHhCCC-cccccCCC-ccceeH
Q 020104          160 KLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSS-LALILGNR-EEYGFLLN-TSMVHV  236 (331)
Q Consensus       160 ~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~-~~~i~v  236 (331)
                         .|.|||+.||++++.+++.+.+.+|++++|.|+++-|||.+-+.  .++... ...+.|.+ +.++++.+ +||+||
T Consensus       147 ---~PsSPYSASKAasD~lVray~~TYglp~~ItrcSNNYGPyqfpE--KlIP~~I~nal~g~~lpvYGdG~~iRDWl~V  221 (340)
T COG1088         147 ---NPSSPYSASKAASDLLVRAYVRTYGLPATITRCSNNYGPYQFPE--KLIPLMIINALLGKPLPVYGDGLQIRDWLYV  221 (340)
T ss_pred             ---CCCCCcchhhhhHHHHHHHHHHHcCCceEEecCCCCcCCCcCch--hhhHHHHHHHHcCCCCceecCCcceeeeEEe
Confidence               67899999999999999999999999999999999999987652  344443 45667776 77888887 899999


Q ss_pred             HHHHHHHHHhhcCCCCCceEEEec-cccCHHHHHHHHHhhCCCCCCCCc--cCC-ccc-cCCcCcccCcHHH-HHcCCcc
Q 020104          237 DDVARAHIFLLEYPDAKGRYICSS-HTLTIQEMAEFLSAKYPEYPIPTV--DSL-AEI-EGYRAPGSSSKKL-LDAGFRY  310 (331)
Q Consensus       237 ~D~a~~~~~~~~~~~~~~~~~~~~-~~~s~~e~~~~i~~~~~~~~~~~~--~~~-~~~-~~~~~~~~~~~k~-~~lg~~~  310 (331)
                      +|-|+|+..++.+...|++||+++ ...+.-|+++.|.+.+++.....-  ..+ .+. .......+|.+|+ ++|||.|
T Consensus       222 eDh~~ai~~Vl~kg~~GE~YNIgg~~E~~Nlevv~~i~~~l~~~~~~~~~li~~V~DRpGHD~RYaid~~Ki~~eLgW~P  301 (340)
T COG1088         222 EDHCRAIDLVLTKGKIGETYNIGGGNERTNLEVVKTICELLGKDKPDYRDLITFVEDRPGHDRRYAIDASKIKRELGWRP  301 (340)
T ss_pred             HhHHHHHHHHHhcCcCCceEEeCCCccchHHHHHHHHHHHhCccccchhhheEeccCCCCCccceeechHHHhhhcCCCc
Confidence            999999999999999999999865 678999999999999883322100  011 111 2335678899999 9999999


Q ss_pred             ccChhhhHHHHHHHHHHcC
Q 020104          311 NYGIDEMFDEAIQCCKEKG  329 (331)
Q Consensus       311 ~~~~~e~i~~~~~~~~~~~  329 (331)
                      +++|++|++++++||.++.
T Consensus       302 ~~~fe~GlrkTv~WY~~N~  320 (340)
T COG1088         302 QETFETGLRKTVDWYLDNE  320 (340)
T ss_pred             CCCHHHHHHHHHHHHHhch
Confidence            9999999999999998863

>PLN00198 anthocyanidin reductase; Provisional

Probab=100.00  E-value=8.4e-48  Score=339.84  Aligned_cols=320  Identities=43%  Similarity=0.726  Sum_probs=237.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      ++|+|||||||||||++|+++|+++|++|++++|+..     .......+..+.. .++++++.+|+.|.+++.+++.++
T Consensus         8 ~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~-----~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~   81 (338)
T PLN00198          8 GKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPE-----NQKKIAHLRALQE-LGDLKIFGADLTDEESFEAPIAGC   81 (338)
T ss_pred             CCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCC-----CHHHHHHHHhcCC-CCceEEEEcCCCChHHHHHHHhcC
Confidence            4578999999999999999999999999999999862     2221111111111 136889999999999999999999


Q ss_pred             cEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCC--CCCCcccCCCCCChhhhhhc
Q 020104           84 TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYND--KDVDMMDETFWSDVDYIRKL  161 (331)
Q Consensus        84 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~--~~~~~~~E~~~~~~~~~~~~  161 (331)
                      |+|||+|+.......++....+++|+.++.++++++++.+.+++|||+||.++|+...  ....+++|+.+.........
T Consensus        82 d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~~  161 (338)
T PLN00198         82 DLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSE  161 (338)
T ss_pred             CEEEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhhc
Confidence            9999999975544344543578999999999999998863378999999999996322  12345677654332222223


Q ss_pred             CCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCccc-c-c-----CCCccce
Q 020104          162 DSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEY-G-F-----LLNTSMV  234 (331)
Q Consensus       162 ~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-----~~~~~~i  234 (331)
                      .+|.++|+.+|.++|++++.++++++++++++||+++|||+.....+..+..+.....+....+ + .     .+.++|+
T Consensus       162 ~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i  241 (338)
T PLN00198        162 KPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPSLTSDIPSSLSLAMSLITGNEFLINGLKGMQMLSGSISIT  241 (338)
T ss_pred             CCccchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCCccCCCCCcHHHHHHHHcCCccccccccccccccCCccee
Confidence            4567889999999999999999988999999999999999865443333322223333333211 1 1     1126999


Q ss_pred             eHHHHHHHHHHhhcCCCCCceEEEeccccCHHHHHHHHHhhCCCCCCCCccCCccccCCcCcccCcHHHHHcCCccccCh
Q 020104          235 HVDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSSKKLLDAGFRYNYGI  314 (331)
Q Consensus       235 ~v~D~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lg~~~~~~~  314 (331)
                      |++|+|++++.+++.+..++.|++++..+|+.|+++.+.+.++...++.  .+..........+|++|++.+||+|++++
T Consensus       242 ~V~D~a~a~~~~~~~~~~~~~~~~~~~~~s~~el~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~~G~~p~~~l  319 (338)
T PLN00198        242 HVEDVCRAHIFLAEKESASGRYICCAANTSVPELAKFLIKRYPQYQVPT--DFGDFPSKAKLIISSEKLISEGFSFEYGI  319 (338)
T ss_pred             EHHHHHHHHHHHhhCcCcCCcEEEecCCCCHHHHHHHHHHHCCCCCCCc--cccccCCCCccccChHHHHhCCceecCcH
Confidence            9999999999999886656778878888999999999999887443333  22221222345689999955799999999


Q ss_pred             hhhHHHHHHHHHHcCCC
Q 020104          315 DEMFDEAIQCCKEKGYL  331 (331)
Q Consensus       315 ~e~i~~~~~~~~~~~~~  331 (331)
                      +|+|+++++||+++++|
T Consensus       320 ~~gi~~~~~~~~~~~~~  336 (338)
T PLN00198        320 EEIYDQTVEYFKAKGLL  336 (338)
T ss_pred             HHHHHHHHHHHHHcCCC
Confidence            99999999999998875

>PLN02214 cinnamoyl-CoA reductase

Probab=100.00  E-value=1.5e-47  Score=337.65  Aligned_cols=312  Identities=35%  Similarity=0.602  Sum_probs=238.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      ++|+|||||||||||++++++|+++|++|++++|+..     .... ..+..+.....+++++.+|+.|.+++.++++++
T Consensus         9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~-----~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   82 (342)
T PLN02214          9 AGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPD-----DPKN-THLRELEGGKERLILCKADLQDYEALKAAIDGC   82 (342)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCch-----hhhH-HHHHHhhCCCCcEEEEecCcCChHHHHHHHhcC
Confidence            4678999999999999999999999999999999762     1110 011111111135888999999999999999999


Q ss_pred             cEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccc-eeecCCC-CCCcccCCCCCChhhhhhc
Q 020104           84 TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNA-AVFYNDK-DVDMMDETFWSDVDYIRKL  161 (331)
Q Consensus        84 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~-~~~~~~~-~~~~~~E~~~~~~~~~~~~  161 (331)
                      |+|||+|+...   .++. ..+++|+.++.+++++|++.+ ++||||+||.. +|+.... ...+++|++|...+.   +
T Consensus        83 d~Vih~A~~~~---~~~~-~~~~~nv~gt~~ll~aa~~~~-v~r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~---~  154 (342)
T PLN02214         83 DGVFHTASPVT---DDPE-QMVEPAVNGAKFVINAAAEAK-VKRVVITSSIGAVYMDPNRDPEAVVDESCWSDLDF---C  154 (342)
T ss_pred             CEEEEecCCCC---CCHH-HHHHHHHHHHHHHHHHHHhcC-CCEEEEeccceeeeccCCCCCCcccCcccCCChhh---c
Confidence            99999999753   3454 889999999999999999998 89999999964 6642221 123578887643221   2


Q ss_pred             CCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHHHHHH
Q 020104          162 DSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVAR  241 (331)
Q Consensus       162 ~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~  241 (331)
                      ..|.+.|+.+|..+|++++.++++++++++++||+++|||+..+.....+..+.....+....++ ...++|||++|+|+
T Consensus       155 ~~p~~~Y~~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~i~V~Dva~  233 (342)
T PLN02214        155 KNTKNWYCYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPLQPTINASLYHVLKYLTGSAKTYA-NLTQAYVDVRDVAL  233 (342)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCcccCC-CCCcCeeEHHHHHH
Confidence            34567899999999999999988889999999999999998654332333333344445443333 22379999999999


Q ss_pred             HHHHhhcCCCCCceEEEeccccCHHHHHHHHHhhCCCCCCCCccCCccccCCcCcccCcHHHHHcCCccccChhhhHHHH
Q 020104          242 AHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSSKKLLDAGFRYNYGIDEMFDEA  321 (331)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lg~~~~~~~~e~i~~~  321 (331)
                      +++.+++++..++.||++++.++++|+++.+.+.+|...++...............+|++|++.|||+|+ +++|+|+++
T Consensus       234 a~~~al~~~~~~g~yn~~~~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~LG~~p~-~lee~i~~~  312 (342)
T PLN02214        234 AHVLVYEAPSASGRYLLAESARHRGEVVEILAKLFPEYPLPTKCKDEKNPRAKPYKFTNQKIKDLGLEFT-STKQSLYDT  312 (342)
T ss_pred             HHHHHHhCcccCCcEEEecCCCCHHHHHHHHHHHCCCCCCCCCCccccCCCCCccccCcHHHHHcCCccc-CHHHHHHHH
Confidence            9999999876678999877789999999999999985554441111111233455689999977999996 999999999


Q ss_pred             HHHHHHcCCC
Q 020104          322 IQCCKEKGYL  331 (331)
Q Consensus       322 ~~~~~~~~~~  331 (331)
                      ++||++.|.|
T Consensus       313 ~~~~~~~~~~  322 (342)
T PLN02214        313 VKSLQEKGHL  322 (342)
T ss_pred             HHHHHHcCCC
Confidence            9999998875

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=100.00  E-value=5.3e-47  Score=332.64  Aligned_cols=318  Identities=36%  Similarity=0.597  Sum_probs=239.7

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |+-.+++|||||||||||++++++|++.|++|+++.|+.     ...+....+........+++++.+|+.|++++.+++
T Consensus         1 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~   75 (322)
T PLN02986          1 MNGGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDL-----TDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAI   75 (322)
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCC-----cchHHHHHHHhccCCCCceEEEecCCCCcchHHHHH
Confidence            555568999999999999999999999999999999987     332222222111111246899999999999999999


Q ss_pred             cCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCC---CCCcccCCCCCChhh
Q 020104           81 AGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDK---DVDMMDETFWSDVDY  157 (331)
Q Consensus        81 ~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~---~~~~~~E~~~~~~~~  157 (331)
                      +++|+|||+|+.......++....++.|+.++.+++++|++...++|||++||.+++.++..   ...+++|+++.....
T Consensus        76 ~~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~  155 (322)
T PLN02986         76 EGCDAVFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPSL  155 (322)
T ss_pred             hCCCEEEEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCccCCCCCCcCcccCCChHH
Confidence            99999999999765443444435789999999999999998622899999999887643322   234578887643221


Q ss_pred             hhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHH
Q 020104          158 IRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVD  237 (331)
Q Consensus       158 ~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~  237 (331)
                      .   ..+.+.|+.+|..+|++++.+.++++++++++||+++|||+..+........+.....+.. .++ ...++|+|++
T Consensus       156 ~---~~~~~~Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~-~~~-~~~~~~v~v~  230 (322)
T PLN02986        156 C---RETKNWYPLSKILAENAAWEFAKDNGIDMVVLNPGFICGPLLQPTLNFSVELIVDFINGKN-LFN-NRFYRFVDVR  230 (322)
T ss_pred             h---hccccchHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCCCCCCCCccHHHHHHHHcCCC-CCC-CcCcceeEHH
Confidence            1   1345789999999999999999888999999999999999865432222222233334443 222 2236999999


Q ss_pred             HHHHHHHHhhcCCCCCceEEEeccccCHHHHHHHHHhhCCCCCCCCccCCccc-cCCcCcccCcHHHHHcCCccccChhh
Q 020104          238 DVARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEI-EGYRAPGSSSKKLLDAGFRYNYGIDE  316 (331)
Q Consensus       238 D~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~~~lg~~~~~~~~e  316 (331)
                      |+|++++.+++++..+++||++++.+|+.|+++.+.+.+|...++.  ..... .......+|++|++.|||+|+ +++|
T Consensus       231 Dva~a~~~al~~~~~~~~yni~~~~~s~~e~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~d~~~~~~lg~~~~-~l~e  307 (322)
T PLN02986        231 DVALAHIKALETPSANGRYIIDGPIMSVNDIIDILRELFPDLCIAD--TNEESEMNEMICKVCVEKVKNLGVEFT-PMKS  307 (322)
T ss_pred             HHHHHHHHHhcCcccCCcEEEecCCCCHHHHHHHHHHHCCCCCCCC--CCccccccccCCccCHHHHHHcCCccc-CHHH
Confidence            9999999999987767799998888999999999999998554443  11111 111123489999977999998 9999


Q ss_pred             hHHHHHHHHHHcCCC
Q 020104          317 MFDEAIQCCKEKGYL  331 (331)
Q Consensus       317 ~i~~~~~~~~~~~~~  331 (331)
                      +|+++++|+++.|+|
T Consensus       308 ~~~~~~~~~~~~~~~  322 (322)
T PLN02986        308 SLRDTILSLKEKCLL  322 (322)
T ss_pred             HHHHHHHHHHHcCCC
Confidence            999999999999976

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=100.00  E-value=2.5e-47  Score=337.44  Aligned_cols=308  Identities=16%  Similarity=0.131  Sum_probs=231.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccC-CC-CCCCcEEEEeCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKN-LP-GASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      .+|+|||||||||||++|+++|+++|++|++++|....    ....+..+.. .. ....+++++.+|+.|.+.+.++++
T Consensus        14 ~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~   89 (348)
T PRK15181         14 APKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTG----YQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACK   89 (348)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCc----chhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhh
Confidence            35799999999999999999999999999999986521    1111111100 00 012468899999999999999999


Q ss_pred             CccEEEEecccCC--CCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhh
Q 020104           82 GCTGVLHVATPVD--FEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIR  159 (331)
Q Consensus        82 ~~d~Vih~a~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~  159 (331)
                      ++|+|||+|+...  ....++. ..+++|+.++.+++++|++.+ +++|||+||.++|+.  ....+..|+++       
T Consensus        90 ~~d~ViHlAa~~~~~~~~~~~~-~~~~~Nv~gt~nll~~~~~~~-~~~~v~~SS~~vyg~--~~~~~~~e~~~-------  158 (348)
T PRK15181         90 NVDYVLHQAALGSVPRSLKDPI-ATNSANIDGFLNMLTAARDAH-VSSFTYAASSSTYGD--HPDLPKIEERI-------  158 (348)
T ss_pred             CCCEEEECccccCchhhhhCHH-HHHHHHHHHHHHHHHHHHHcC-CCeEEEeechHhhCC--CCCCCCCCCCC-------
Confidence            9999999999654  2234555 789999999999999999998 899999999999963  23445566653       


Q ss_pred             hcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCC--CccHHHHH-HHHhCCCcc-cccCCC-ccce
Q 020104          160 KLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKF--AGSVRSSL-ALILGNREE-YGFLLN-TSMV  234 (331)
Q Consensus       160 ~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~--~~~~~~~~-~~~~~~~~~-~~~~~~-~~~i  234 (331)
                        ..|.++|+.+|..+|.+++.+..+++++++++||+++|||++.+..  ...+..+. ....+.+.. ++.+.+ ++|+
T Consensus       159 --~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~g~~~rd~i  236 (348)
T PRK15181        159 --GRPLSPYAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRRQNPNGAYSAVIPRWILSLLKDEPIYINGDGSTSRDFC  236 (348)
T ss_pred             --CCCCChhhHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcCCCCCCccccCHHHHHHHHHcCCCcEEeCCCCceEeeE
Confidence              3466789999999999999998888999999999999999865432  22344443 344455533 344444 8999


Q ss_pred             eHHHHHHHHHHhhcCC---CCCceEEEe-ccccCHHHHHHHHHhhCCCCCCC---CccCCc--cccCCcCcccCcHHH-H
Q 020104          235 HVDDVARAHIFLLEYP---DAKGRYICS-SHTLTIQEMAEFLSAKYPEYPIP---TVDSLA--EIEGYRAPGSSSKKL-L  304 (331)
Q Consensus       235 ~v~D~a~~~~~~~~~~---~~~~~~~~~-~~~~s~~e~~~~i~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~k~-~  304 (331)
                      |++|+|+++++++...   ..+++||++ ++.+|++|+++.+.+..+....+   ......  .........+|++|+ +
T Consensus       237 ~v~D~a~a~~~~~~~~~~~~~~~~yni~~g~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~  316 (348)
T PRK15181        237 YIENVIQANLLSATTNDLASKNKVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAEPIYKDFRDGDVKHSQADITKIKT  316 (348)
T ss_pred             EHHHHHHHHHHHHhcccccCCCCEEEecCCCcEeHHHHHHHHHHHhCcccccccCCCcccCCCCCCcccccccCHHHHHH
Confidence            9999999999877543   246789974 57899999999999877622110   000111  112334567899999 7


Q ss_pred             HcCCccccChhhhHHHHHHHHHHc
Q 020104          305 DAGFRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       305 ~lg~~~~~~~~e~i~~~~~~~~~~  328 (331)
                      .|||+|+++++|+|+++++|++.+
T Consensus       317 ~lGw~P~~sl~egl~~~~~w~~~~  340 (348)
T PRK15181        317 FLSYEPEFDIKEGLKQTLKWYIDK  340 (348)
T ss_pred             HhCCCCCCCHHHHHHHHHHHHHHh
Confidence            899999999999999999999754

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=100.00  E-value=3e-46  Score=328.15  Aligned_cols=314  Identities=38%  Similarity=0.618  Sum_probs=233.8

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      .|+|||||||||||++|+++|+++|++|++++|+.     ........+.......++++++.+|+.|++.+..+++++|
T Consensus         4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d   78 (322)
T PLN02662          4 GKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDP-----NDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCE   78 (322)
T ss_pred             CCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCC-----CchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCC
Confidence            57899999999999999999999999999999986     2222121111111112478999999999999999999999


Q ss_pred             EEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhc-CCccEEEEecccceeecCC-C--CCCcccCCCCCChhhhhh
Q 020104           85 GVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKS-GTVKRVVYTSSNAAVFYND-K--DVDMMDETFWSDVDYIRK  160 (331)
Q Consensus        85 ~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~-~--~~~~~~E~~~~~~~~~~~  160 (331)
                      +|||+|+.......++....+++|+.++.+++++|++. + ++||||+||.+++.++. .  ...+++|+.+......  
T Consensus        79 ~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~-~~~~v~~SS~~~~~y~~~~~~~~~~~~E~~~~~p~~~--  155 (322)
T PLN02662         79 GVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPS-VKRVVVTSSMAAVAYNGKPLTPDVVVDETWFSDPAFC--  155 (322)
T ss_pred             EEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCC-CCEEEEccCHHHhcCCCcCCCCCCcCCcccCCChhHh--
Confidence            99999997654334443378899999999999999987 6 89999999987532221 1  2345777764321110  


Q ss_pred             cCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHHHHH
Q 020104          161 LDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVA  240 (331)
Q Consensus       161 ~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a  240 (331)
                       ..+.+.|+.+|..+|++++.+.++++++++++||+++|||+..+........+...+.+.. .++ ...++|+|++|+|
T Consensus       156 -~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~i~v~Dva  232 (322)
T PLN02662        156 -EESKLWYVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPLLQPTLNTSAEAILNLINGAQ-TFP-NASYRWVDVRDVA  232 (322)
T ss_pred             -hcccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCCCCCCCCchHHHHHHHhcCCc-cCC-CCCcCeEEHHHHH
Confidence             1123579999999999999998888999999999999999865432222222233333332 222 2347999999999


Q ss_pred             HHHHHhhcCCCCCceEEEeccccCHHHHHHHHHhhCCCCCCCCccCCccccCCcCcccCcHHHHHcCCccccChhhhHHH
Q 020104          241 RAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSSKKLLDAGFRYNYGIDEMFDE  320 (331)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lg~~~~~~~~e~i~~  320 (331)
                      ++++.+++++..++.||+++..+|++|+++.+.+..|...++... ...........+|++|++.|||+++ +++++|++
T Consensus       233 ~a~~~~~~~~~~~~~~~~~g~~~s~~e~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~d~~k~~~lg~~~~-~~~~~l~~  310 (322)
T PLN02662        233 NAHIQAFEIPSASGRYCLVERVVHYSEVVKILHELYPTLQLPEKC-ADDKPYVPTYQVSKEKAKSLGIEFI-PLEVSLKD  310 (322)
T ss_pred             HHHHHHhcCcCcCCcEEEeCCCCCHHHHHHHHHHHCCCCCCCCCC-CCccccccccccChHHHHHhCCccc-cHHHHHHH
Confidence            999999998766678888788899999999999988755444311 1111233456799999966999985 99999999


Q ss_pred             HHHHHHHcCCC
Q 020104          321 AIQCCKEKGYL  331 (331)
Q Consensus       321 ~~~~~~~~~~~  331 (331)
                      +++||+++|++
T Consensus       311 ~~~~~~~~~~~  321 (322)
T PLN02662        311 TVESLKEKGFL  321 (322)
T ss_pred             HHHHHHHcCCC
Confidence            99999999875

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=100.00  E-value=7.7e-46  Score=325.81  Aligned_cols=317  Identities=35%  Similarity=0.570  Sum_probs=237.4

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |+..+|+||||||+||||++++++|+++|++|++++|+..     .......+........+++++.+|+.|.+++.+++
T Consensus         1 ~~~~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~-----~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~   75 (325)
T PLN02989          1 MADGGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPK-----DRKKTDHLLALDGAKERLKLFKADLLDEGSFELAI   75 (325)
T ss_pred             CCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCc-----chhhHHHHHhccCCCCceEEEeCCCCCchHHHHHH
Confidence            7777889999999999999999999999999999998872     22221111111111246889999999999999999


Q ss_pred             cCccEEEEecccCCCC--CCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCC---CCCCcccCCCCCCh
Q 020104           81 AGCTGVLHVATPVDFE--DKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYND---KDVDMMDETFWSDV  155 (331)
Q Consensus        81 ~~~d~Vih~a~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~---~~~~~~~E~~~~~~  155 (331)
                      +++|+|||+|+.....  ..++. ..+++|+.++.+++++|.+...+++||++||..+|+...   ....+++|+++...
T Consensus        76 ~~~d~vih~A~~~~~~~~~~~~~-~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p  154 (325)
T PLN02989         76 DGCETVFHTASPVAITVKTDPQV-ELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNP  154 (325)
T ss_pred             cCCCEEEEeCCCCCCCCCCChHH-HHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCch
Confidence            9999999999965422  22333 788999999999999998853268999999998875322   12346788876432


Q ss_pred             hhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCcccee
Q 020104          156 DYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVH  235 (331)
Q Consensus       156 ~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  235 (331)
                      ...   ..+.++|+.+|..+|++++.+.++++++++++||+++|||+..+........+.....++.. +. ...++|+|
T Consensus       155 ~~~---~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~i~~~~~~~~~-~~-~~~r~~i~  229 (325)
T PLN02989        155 SFA---EERKQWYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPILQPTLNFSVAVIVELMKGKNP-FN-TTHHRFVD  229 (325)
T ss_pred             hHh---cccccchHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCCCCCCCCchHHHHHHHHcCCCC-CC-CcCcCeeE
Confidence            111   12346799999999999999998889999999999999998764322112222333334332 22 22379999


Q ss_pred             HHHHHHHHHHhhcCCCCCceEEEeccccCHHHHHHHHHhhCCCCCCCCccCCccc--cCCcCcccCcHHHHHcCCccccC
Q 020104          236 VDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEI--EGYRAPGSSSKKLLDAGFRYNYG  313 (331)
Q Consensus       236 v~D~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~k~~~lg~~~~~~  313 (331)
                      ++|+|++++.+++++..++.||++++.+|++|+++.+.+.+|...++.  .....  ........|++|++.|||.|.++
T Consensus       230 v~Dva~a~~~~l~~~~~~~~~ni~~~~~s~~ei~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~k~~~lg~~p~~~  307 (325)
T PLN02989        230 VRDVALAHVKALETPSANGRYIIDGPVVTIKDIENVLREFFPDLCIAD--RNEDITELNSVTFNVCLDKVKSLGIIEFTP  307 (325)
T ss_pred             HHHHHHHHHHHhcCcccCceEEEecCCCCHHHHHHHHHHHCCCCCCCC--CCCCcccccccCcCCCHHHHHHcCCCCCCC
Confidence            999999999999887667799998888999999999999998443322  11111  12235678899996699999999


Q ss_pred             hhhhHHHHHHHHHHcCC
Q 020104          314 IDEMFDEAIQCCKEKGY  330 (331)
Q Consensus       314 ~~e~i~~~~~~~~~~~~  330 (331)
                      ++|+|+++++|++..+.
T Consensus       308 l~~gi~~~~~~~~~~~~  324 (325)
T PLN02989        308 TETSLRDTVLSLKEKCL  324 (325)
T ss_pred             HHHHHHHHHHHHHHhCC
Confidence            99999999999998775

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=1.9e-45  Score=326.51  Aligned_cols=318  Identities=42%  Similarity=0.750  Sum_probs=232.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      ..|+||||||+||||++++++|+++|++|++++|+.     .....+.  ..+. ...+++++.+|+.|.+++.++++++
T Consensus         9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~-----~~~~~~~--~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~   80 (353)
T PLN02896          9 ATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDP-----AKSLHLL--SKWK-EGDRLRLFRADLQEEGSFDEAVKGC   80 (353)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCh-----HHHHHHH--Hhhc-cCCeEEEEECCCCCHHHHHHHHcCC
Confidence            457999999999999999999999999999999876     2222111  1111 1246889999999999999999999


Q ss_pred             cEEEEecccCCCC----CCChh----hHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCC---CCcccCCCC
Q 020104           84 TGVLHVATPVDFE----DKEPE----EVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKD---VDMMDETFW  152 (331)
Q Consensus        84 d~Vih~a~~~~~~----~~~~~----~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~---~~~~~E~~~  152 (331)
                      |+|||+|+.....    ..++.    ...++.|+.++.+++++|++.+.+++||++||.++|+..+..   ..+++|+.+
T Consensus        81 d~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~  160 (353)
T PLN02896         81 DGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQ  160 (353)
T ss_pred             CEEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccC
Confidence            9999999875432    12332    123445579999999999887437899999999999733221   145677643


Q ss_pred             CChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccC----
Q 020104          153 SDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFL----  228 (331)
Q Consensus       153 ~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  228 (331)
                      ...+...++.++.++|+.+|.++|+++..+++.++++++++||+++|||+.....+..+......+.+....++..    
T Consensus       161 ~p~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  240 (353)
T PLN02896        161 TPIDHVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFLTPSVPSSIQVLLSPITGDSKLFSILSAVN  240 (353)
T ss_pred             CcHHHhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCcCCCCCchHHHHHHHhcCCccccccccccc
Confidence            3222111223455689999999999999999989999999999999999876555544444443334443222211    


Q ss_pred             ---CCccceeHHHHHHHHHHhhcCCCCCceEEEeccccCHHHHHHHHHhhCCCCCCCCccCC-ccccCCcCcccCcHHHH
Q 020104          229 ---LNTSMVHVDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSL-AEIEGYRAPGSSSKKLL  304 (331)
Q Consensus       229 ---~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~  304 (331)
                         +.++|+|++|+|++++.+++.+..++.|++++..+|++|+++.+.+.++...+..  .+ ...........|+++++
T Consensus       241 ~~~~~~dfi~v~Dva~a~~~~l~~~~~~~~~~~~~~~~s~~el~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  318 (353)
T PLN02896        241 SRMGSIALVHIEDICDAHIFLMEQTKAEGRYICCVDSYDMSELINHLSKEYPCSNIQV--RLDEEKRGSIPSEISSKKLR  318 (353)
T ss_pred             cccCceeEEeHHHHHHHHHHHHhCCCcCccEEecCCCCCHHHHHHHHHHhCCCCCccc--cccccccCccccccCHHHHH
Confidence               1259999999999999999876666788888888999999999999887332211  11 11111223456888887


Q ss_pred             HcCCccccChhhhHHHHHHHHHHcCCC
Q 020104          305 DAGFRYNYGIDEMFDEAIQCCKEKGYL  331 (331)
Q Consensus       305 ~lg~~~~~~~~e~i~~~~~~~~~~~~~  331 (331)
                      .|||+|+++++++|+++++|+++++.|
T Consensus       319 ~lGw~p~~~l~~~i~~~~~~~~~~~~~  345 (353)
T PLN02896        319 DLGFEYKYGIEEIIDQTIDCCVDHGFL  345 (353)
T ss_pred             HcCCCccCCHHHHHHHHHHHHHHCCCC
Confidence            799999999999999999999998764

>PLN02427 UDP-apiose/xylose synthase

Probab=100.00  E-value=1.2e-43  Score=318.49  Aligned_cols=313  Identities=15%  Similarity=0.179  Sum_probs=223.5

Q ss_pred             CceEEEecCcchhHHHHHHHHHHC-CCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDH-GYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .|+|||||||||||++|+++|+++ |++|++++|+.     .....+..... .....+++++.+|+.|.+.+.++++++
T Consensus        14 ~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~-----~~~~~l~~~~~-~~~~~~~~~~~~Dl~d~~~l~~~~~~~   87 (386)
T PLN02427         14 PLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYN-----DKIKHLLEPDT-VPWSGRIQFHRINIKHDSRLEGLIKMA   87 (386)
T ss_pred             CcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCc-----hhhhhhhcccc-ccCCCCeEEEEcCCCChHHHHHHhhcC
Confidence            468999999999999999999998 59999999876     22111111000 011246899999999999999999999


Q ss_pred             cEEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChh-----
Q 020104           84 TGVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVD-----  156 (331)
Q Consensus        84 d~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~-----  156 (331)
                      |+|||+|+....  ...++. +.+..|+.++.+++++|++.+  ++|||+||.++|+..  ...+++|+.+...+     
T Consensus        88 d~ViHlAa~~~~~~~~~~~~-~~~~~n~~gt~~ll~aa~~~~--~r~v~~SS~~vYg~~--~~~~~~e~~p~~~~~~~~~  162 (386)
T PLN02427         88 DLTINLAAICTPADYNTRPL-DTIYSNFIDALPVVKYCSENN--KRLIHFSTCEVYGKT--IGSFLPKDHPLRQDPAFYV  162 (386)
T ss_pred             CEEEEcccccChhhhhhChH-HHHHHHHHHHHHHHHHHHhcC--CEEEEEeeeeeeCCC--cCCCCCccccccccccccc
Confidence            999999986542  223444 667889999999999998876  799999999999632  22234444332110     


Q ss_pred             ------h--hhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCC---------CCCccHHHHH-HHH
Q 020104          157 ------Y--IRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICP---------KFAGSVRSSL-ALI  218 (331)
Q Consensus       157 ------~--~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~---------~~~~~~~~~~-~~~  218 (331)
                            .  ..+...|.+.|+.+|.++|+++..++..++++++++||+++|||+...         .....+..+. ...
T Consensus       163 ~~e~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~i~~~~~~~~  242 (386)
T PLN02427        163 LKEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLL  242 (386)
T ss_pred             ccccccccccCCCCccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCCCCccccccccccccchHHHHHHHHHh
Confidence                  0  001123457899999999999999988889999999999999997531         1122222222 233


Q ss_pred             hCCCcc-cccCCC-ccceeHHHHHHHHHHhhcCCC--CCceEEEec--cccCHHHHHHHHHhhCCCCCCCCc-----cCC
Q 020104          219 LGNREE-YGFLLN-TSMVHVDDVARAHIFLLEYPD--AKGRYICSS--HTLTIQEMAEFLSAKYPEYPIPTV-----DSL  287 (331)
Q Consensus       219 ~~~~~~-~~~~~~-~~~i~v~D~a~~~~~~~~~~~--~~~~~~~~~--~~~s~~e~~~~i~~~~~~~~~~~~-----~~~  287 (331)
                      .+.+.. ++.+.+ ++|+|++|+|++++.+++++.  .+++||+++  +.+|+.|+++.+.+.+|.......     ...
T Consensus       243 ~~~~~~~~g~g~~~r~~i~V~Dva~ai~~al~~~~~~~g~~yni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~  322 (386)
T PLN02427        243 RREPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLAEMMTEVYAKVSGEPALEEPTVDV  322 (386)
T ss_pred             cCCCeEEECCCCceECcEeHHHHHHHHHHHHhCcccccCceEEeCCCCCCccHHHHHHHHHHHhcccccccccccccccc
Confidence            444433 333333 799999999999999998753  356899865  489999999999998873211100     000


Q ss_pred             c-----c--ccCCcCcccCcHHH-HHcCCccccChhhhHHHHHHHHHHc
Q 020104          288 A-----E--IEGYRAPGSSSKKL-LDAGFRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       288 ~-----~--~~~~~~~~~~~~k~-~~lg~~~~~~~~e~i~~~~~~~~~~  328 (331)
                      +     .  .........|.+|+ +.|||+|+++++++|+++++|++..
T Consensus       323 ~~~~~~~~~~~~~~~~~~d~~k~~~~lGw~p~~~l~~gl~~~~~~~~~~  371 (386)
T PLN02427        323 SSKEFYGEGYDDSDKRIPDMTIINKQLGWNPKTSLWDLLESTLTYQHKT  371 (386)
T ss_pred             CcccccCccccchhhccCCHHHHHHhcCCCcCccHHHHHHHHHHHHHHH
Confidence            0     0  12234566799999 8899999999999999999998753

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=100.00  E-value=1.5e-43  Score=313.84  Aligned_cols=305  Identities=19%  Similarity=0.250  Sum_probs=223.6

Q ss_pred             CceEEEecCcchhHHHHHHHHHHC-CCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCC-CCccHHHHhcC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDH-GYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLS-HPDGFDAAIAG   82 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~   82 (331)
                      ||+|||||||||||++|+++|++. |++|++++|+.     ...   ..+..    ..+++++.+|+. +.+.+.+++++
T Consensus         1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~-----~~~---~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~   68 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQT-----DRL---GDLVN----HPRMHFFEGDITINKEWIEYHVKK   68 (347)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcH-----HHH---HHhcc----CCCeEEEeCCCCCCHHHHHHHHcC
Confidence            368999999999999999999986 69999999865     111   11111    146899999997 66777788889


Q ss_pred             ccEEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhh
Q 020104           83 CTGVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRK  160 (331)
Q Consensus        83 ~d~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~  160 (331)
                      +|+|||+|+....  ...++. ..+++|+.++++++++|++.+  ++|||+||..+|+..  ...+++|+++...  ..+
T Consensus        69 ~d~ViH~aa~~~~~~~~~~p~-~~~~~n~~~~~~ll~aa~~~~--~~~v~~SS~~vyg~~--~~~~~~ee~~~~~--~~~  141 (347)
T PRK11908         69 CDVILPLVAIATPATYVKQPL-RVFELDFEANLPIVRSAVKYG--KHLVFPSTSEVYGMC--PDEEFDPEASPLV--YGP  141 (347)
T ss_pred             CCEEEECcccCChHHhhcCcH-HHHHHHHHHHHHHHHHHHhcC--CeEEEEecceeeccC--CCcCcCccccccc--cCc
Confidence            9999999986442  234565 788999999999999999987  699999999999632  2345666652100  012


Q ss_pred             cCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCC------CCccHHHHH-HHHhCCCccc-ccCCC-c
Q 020104          161 LDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPK------FAGSVRSSL-ALILGNREEY-GFLLN-T  231 (331)
Q Consensus       161 ~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~------~~~~~~~~~-~~~~~~~~~~-~~~~~-~  231 (331)
                      ...|.+.|+.+|.++|++++.++.+++++++++||+++|||+..+.      ....+..+. ....+.+..+ +.+.+ +
T Consensus       142 ~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilR~~~v~Gp~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~r  221 (347)
T PRK11908        142 INKPRWIYACSKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGEPISLVDGGSQKR  221 (347)
T ss_pred             CCCccchHHHHHHHHHHHHHHHHHHcCCCeEEEeeeeeeCCCccCCCccccCCcchHHHHHHHHhCCCceEEecCCceee
Confidence            2346778999999999999999988899999999999999985431      122333333 3334544333 33333 7


Q ss_pred             cceeHHHHHHHHHHhhcCCC---CCceEEEec--cccCHHHHHHHHHhhCCCCC-C-------CCccCCc------cccC
Q 020104          232 SMVHVDDVARAHIFLLEYPD---AKGRYICSS--HTLTIQEMAEFLSAKYPEYP-I-------PTVDSLA------EIEG  292 (331)
Q Consensus       232 ~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~--~~~s~~e~~~~i~~~~~~~~-~-------~~~~~~~------~~~~  292 (331)
                      +|+|++|++++++.+++++.   .+++||+++  ..+|++|+++.+.+.++..+ +       .......      ....
T Consensus       222 ~~i~v~D~a~a~~~~~~~~~~~~~g~~yni~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (347)
T PRK11908        222 AFTDIDDGIDALMKIIENKDGVASGKIYNIGNPKNNHSVRELANKMLELAAEYPEYAESAKKVKLVETTSGAYYGKGYQD  301 (347)
T ss_pred             ccccHHHHHHHHHHHHhCccccCCCCeEEeCCCCCCcCHHHHHHHHHHHhcCcccccccccccccccCCchhccCcCcch
Confidence            99999999999999998753   367899865  36999999999998776221 1       0000000      0012


Q ss_pred             CcCcccCcHHH-HHcCCccccChhhhHHHHHHHHHHc
Q 020104          293 YRAPGSSSKKL-LDAGFRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       293 ~~~~~~~~~k~-~~lg~~~~~~~~e~i~~~~~~~~~~  328 (331)
                      ......|++|+ +.|||+|+++++++++++++|++++
T Consensus       302 ~~~~~~d~~k~~~~lGw~p~~~l~~~l~~~~~~~~~~  338 (347)
T PRK11908        302 VQNRVPKIDNTMQELGWAPKTTMDDALRRIFEAYRGH  338 (347)
T ss_pred             hccccCChHHHHHHcCCCCCCcHHHHHHHHHHHHHHH
Confidence            23455688999 8999999999999999999999865

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=100.00  E-value=1.2e-43  Score=315.53  Aligned_cols=305  Identities=17%  Similarity=0.174  Sum_probs=225.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--C
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--G   82 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~   82 (331)
                      ||+|||||||||||++|++.|+++|++|+++.++..     .......+.... ...+++++.+|+.|.+++.++++  +
T Consensus         1 ~~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~   74 (355)
T PRK10217          1 MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLT-----YAGNLMSLAPVA-QSERFAFEKVDICDRAELARVFTEHQ   74 (355)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCc-----cccchhhhhhcc-cCCceEEEECCCcChHHHHHHHhhcC
Confidence            468999999999999999999999988665444331     111111111110 11367889999999999999987  4


Q ss_pred             ccEEEEecccCCCC--CCChhhHHHHHHHHHHHHHHHHHHhc---------CCccEEEEecccceeecCCCCCCcccCCC
Q 020104           83 CTGVLHVATPVDFE--DKEPEEVITQRAINGTLGILKSCLKS---------GTVKRVVYTSSNAAVFYNDKDVDMMDETF  151 (331)
Q Consensus        83 ~d~Vih~a~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~---------~~~~~~v~~SS~~~~~~~~~~~~~~~E~~  151 (331)
                      +|+|||+||.....  ..++. ..+++|+.++.+++++|++.         + +++||++||..+|+.......+++|++
T Consensus        75 ~D~Vih~A~~~~~~~~~~~~~-~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~-~~~~i~~SS~~vyg~~~~~~~~~~E~~  152 (355)
T PRK10217         75 PDCVMHLAAESHVDRSIDGPA-AFIETNIVGTYTLLEAARAYWNALTEDKKS-AFRFHHISTDEVYGDLHSTDDFFTETT  152 (355)
T ss_pred             CCEEEECCcccCcchhhhChH-HHHHHhhHHHHHHHHHHHHhhhcccccccC-ceEEEEecchhhcCCCCCCCCCcCCCC
Confidence            99999999876532  22444 89999999999999999863         3 679999999999964333345678876


Q ss_pred             CCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHH-HHHhCCCc-ccccCC
Q 020104          152 WSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSL-ALILGNRE-EYGFLL  229 (331)
Q Consensus       152 ~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~  229 (331)
                      +         ..|.+.|+.+|.++|.+++.++++++++++++||+++|||+..+.  ..+..+. ....+.+. .++.+.
T Consensus       153 ~---------~~p~s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~--~~~~~~~~~~~~~~~~~~~g~g~  221 (355)
T PRK10217        153 P---------YAPSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFPE--KLIPLMILNALAGKPLPVYGNGQ  221 (355)
T ss_pred             C---------CCCCChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCcc--cHHHHHHHHHhcCCCceEeCCCC
Confidence            4         245778999999999999999888899999999999999986431  2233332 33344443 345444


Q ss_pred             C-ccceeHHHHHHHHHHhhcCCCCCceEEEe-ccccCHHHHHHHHHhhCCCCC--CCCc-------cC-C-ccccCCcCc
Q 020104          230 N-TSMVHVDDVARAHIFLLEYPDAKGRYICS-SHTLTIQEMAEFLSAKYPEYP--IPTV-------DS-L-AEIEGYRAP  296 (331)
Q Consensus       230 ~-~~~i~v~D~a~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~i~~~~~~~~--~~~~-------~~-~-~~~~~~~~~  296 (331)
                      + ++|+|++|+|++++.++..+..+++||++ ++.+|++|+++.+.+.++...  .+..       .. . .........
T Consensus       222 ~~~~~i~v~D~a~a~~~~~~~~~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (355)
T PRK10217        222 QIRDWLYVEDHARALYCVATTGKVGETYNIGGHNERKNLDVVETICELLEELAPNKPQGVAHYRDLITFVADRPGHDLRY  301 (355)
T ss_pred             eeeCcCcHHHHHHHHHHHHhcCCCCCeEEeCCCCcccHHHHHHHHHHHhcccccccccccccccccceecCCCCCCCccc
Confidence            4 89999999999999999887667899975 578999999999999775211  1110       00 0 011223456


Q ss_pred             ccCcHHH-HHcCCccccChhhhHHHHHHHHHHc
Q 020104          297 GSSSKKL-LDAGFRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       297 ~~~~~k~-~~lg~~~~~~~~e~i~~~~~~~~~~  328 (331)
                      .+|++|+ +.|||+|+++++|+++++++||+.+
T Consensus       302 ~~d~~k~~~~lg~~p~~~l~e~l~~~~~~~~~~  334 (355)
T PRK10217        302 AIDASKIARELGWLPQETFESGMRKTVQWYLAN  334 (355)
T ss_pred             ccCHHHHHHhcCCCCcCcHHHHHHHHHHHHHhC
Confidence            7899999 8899999999999999999999775

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=100.00  E-value=1.6e-43  Score=318.82  Aligned_cols=300  Identities=20%  Similarity=0.243  Sum_probs=222.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      +.|||||||||||||++|+++|+++|++|++++|...    ........+..    .++++++.+|+.+..     +.++
T Consensus       119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~----~~~~~~~~~~~----~~~~~~~~~Di~~~~-----~~~~  185 (436)
T PLN02166        119 KRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFT----GRKENLVHLFG----NPRFELIRHDVVEPI-----LLEV  185 (436)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCC----ccHhHhhhhcc----CCceEEEECcccccc-----ccCC
Confidence            3478999999999999999999999999999998641    11111111111    146788899987653     4589


Q ss_pred             cEEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhc
Q 020104           84 TGVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKL  161 (331)
Q Consensus        84 d~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~  161 (331)
                      |+|||+|+....  ...++. ..+++|+.++.+|+++|++.+ + +|||+||.+||+  +....+.+|+.+...    .+
T Consensus       186 D~ViHlAa~~~~~~~~~~p~-~~~~~Nv~gT~nLleaa~~~g-~-r~V~~SS~~VYg--~~~~~p~~E~~~~~~----~p  256 (436)
T PLN02166        186 DQIYHLACPASPVHYKYNPV-KTIKTNVMGTLNMLGLAKRVG-A-RFLLTSTSEVYG--DPLEHPQKETYWGNV----NP  256 (436)
T ss_pred             CEEEECceeccchhhccCHH-HHHHHHHHHHHHHHHHHHHhC-C-EEEEECcHHHhC--CCCCCCCCccccccC----CC
Confidence            999999986542  223555 889999999999999999988 5 899999999996  333456777643211    11


Q ss_pred             CCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHH-HHHhCCCc-ccccCCC-ccceeHHH
Q 020104          162 DSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSL-ALILGNRE-EYGFLLN-TSMVHVDD  238 (331)
Q Consensus       162 ~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~-~~~i~v~D  238 (331)
                      ..|.+.|+.+|..+|++++.+++.++++++++||+++|||+........+..++ ....+.+. .++.+.+ ++|+|++|
T Consensus       257 ~~p~s~Yg~SK~~aE~~~~~y~~~~~l~~~ilR~~~vYGp~~~~~~~~~i~~~i~~~l~~~~i~v~g~g~~~rdfi~V~D  336 (436)
T PLN02166        257 IGERSCYDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQTIRKQPMTVYGDGKQTRSFQYVSD  336 (436)
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCCCCCccchHHHHHHHHhcCCCcEEeCCCCeEEeeEEHHH
Confidence            245678999999999999999988899999999999999986532223343333 33445443 3444444 89999999


Q ss_pred             HHHHHHHhhcCCCCCceEEEe-ccccCHHHHHHHHHhhCCC-CCCCCccCCccccCCcCcccCcHHH-HHcCCccccChh
Q 020104          239 VARAHIFLLEYPDAKGRYICS-SHTLTIQEMAEFLSAKYPE-YPIPTVDSLAEIEGYRAPGSSSKKL-LDAGFRYNYGID  315 (331)
Q Consensus       239 ~a~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~k~-~~lg~~~~~~~~  315 (331)
                      +++++..+++.+ ..++||++ ++.+|+.|+++.+.+..+. ..+..  ............+|++|+ +.|||+|+++++
T Consensus       337 va~ai~~~~~~~-~~giyNIgs~~~~Si~ela~~I~~~~g~~~~i~~--~p~~~~~~~~~~~d~~Ka~~~LGw~P~~sl~  413 (436)
T PLN02166        337 LVDGLVALMEGE-HVGPFNLGNPGEFTMLELAEVVKETIDSSATIEF--KPNTADDPHKRKPDISKAKELLNWEPKISLR  413 (436)
T ss_pred             HHHHHHHHHhcC-CCceEEeCCCCcEeHHHHHHHHHHHhCCCCCeee--CCCCCCCccccccCHHHHHHHcCCCCCCCHH
Confidence            999999998764 45789975 6789999999999998872 11111  001112334567899999 889999999999


Q ss_pred             hhHHHHHHHHHHc
Q 020104          316 EMFDEAIQCCKEK  328 (331)
Q Consensus       316 e~i~~~~~~~~~~  328 (331)
                      ++++++++||+.+
T Consensus       414 egl~~~i~~~~~~  426 (436)
T PLN02166        414 EGLPLMVSDFRNR  426 (436)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999764

>PLN02572 UDP-sulfoquinovose synthase

Probab=100.00  E-value=2.1e-43  Score=319.49  Aligned_cols=319  Identities=13%  Similarity=0.136  Sum_probs=222.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCC--c----------cccccccCCCCCCCcEEEEeCCCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRN--S----------KDLSFLKNLPGASERLRIFHADLS   71 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--~----------~~~~~~~~~~~~~~~~~~~~~D~~   71 (331)
                      ++|+|||||||||||++|+++|+++|++|++++|.........  .          ..+..+...  ...+++++.+|+.
T Consensus        46 ~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~v~~v~~Dl~  123 (442)
T PLN02572         46 KKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEV--SGKEIELYVGDIC  123 (442)
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHh--hCCcceEEECCCC
Confidence            5689999999999999999999999999999875321000000  0          000000000  0136889999999


Q ss_pred             CCccHHHHhc--CccEEEEecccCCC--CCCCh--hhHHHHHHHHHHHHHHHHHHhcCCcc-EEEEecccceeecCCCCC
Q 020104           72 HPDGFDAAIA--GCTGVLHVATPVDF--EDKEP--EEVITQRAINGTLGILKSCLKSGTVK-RVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        72 ~~~~~~~~~~--~~d~Vih~a~~~~~--~~~~~--~~~~~~~n~~~~~~l~~~~~~~~~~~-~~v~~SS~~~~~~~~~~~  144 (331)
                      |.+.+.++++  ++|+|||+|+....  ...++  ....+++|+.++.+++++|++.+ ++ +||++||..+|+..  . 
T Consensus       124 d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~g-v~~~~V~~SS~~vYG~~--~-  199 (442)
T PLN02572        124 DFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFA-PDCHLVKLGTMGEYGTP--N-  199 (442)
T ss_pred             CHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhC-CCccEEEEecceecCCC--C-
Confidence            9999999987  58999999976431  11222  12557899999999999999988 75 99999999999632  1 


Q ss_pred             CcccCCCCC-----ChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCC------------
Q 020104          145 DMMDETFWS-----DVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKF------------  207 (331)
Q Consensus       145 ~~~~E~~~~-----~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~------------  207 (331)
                      .+++|....     ..+....+..|.++|+.+|.++|.+++.++..++++++++||+++|||++....            
T Consensus       200 ~~~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~~~~~~~~~li~~~~~~  279 (442)
T PLN02572        200 IDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETMMDEELINRLDYD  279 (442)
T ss_pred             CCCcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCCcccccccccccccCcc
Confidence            233332110     000000123567899999999999999999989999999999999999865311            


Q ss_pred             ---CccHHHH-HHHHhCCCc-ccccCCC-ccceeHHHHHHHHHHhhcCCC-CC--ceEEEeccccCHHHHHHHHHhh---
Q 020104          208 ---AGSVRSS-LALILGNRE-EYGFLLN-TSMVHVDDVARAHIFLLEYPD-AK--GRYICSSHTLTIQEMAEFLSAK---  275 (331)
Q Consensus       208 ---~~~~~~~-~~~~~~~~~-~~~~~~~-~~~i~v~D~a~~~~~~~~~~~-~~--~~~~~~~~~~s~~e~~~~i~~~---  275 (331)
                         ...+..+ .....+.+. .++.+.+ ++|+||+|+|++++.+++++. .+  .+||++++.+|+.|+++.+.+.   
T Consensus       280 ~~~~~~i~~~~~~~~~g~~i~v~g~G~~~Rdfi~V~Dva~a~~~al~~~~~~g~~~i~Nigs~~~si~el~~~i~~~~~~  359 (442)
T PLN02572        280 GVFGTALNRFCVQAAVGHPLTVYGKGGQTRGFLDIRDTVRCIEIAIANPAKPGEFRVFNQFTEQFSVNELAKLVTKAGEK  359 (442)
T ss_pred             cchhhHHHHHHHHHhcCCCceecCCCCEEECeEEHHHHHHHHHHHHhChhhcCceeEEEeCCCceeHHHHHHHHHHHHHh
Confidence               0122222 233345543 3455555 899999999999999998653 23  3688877889999999999998   


Q ss_pred             CCC-CCCCCccCCccccCCcCcccCcHHHHHcCCcccc---ChhhhHHHHHHHHHHc
Q 020104          276 YPE-YPIPTVDSLAEIEGYRAPGSSSKKLLDAGFRYNY---GIDEMFDEAIQCCKEK  328 (331)
Q Consensus       276 ~~~-~~~~~~~~~~~~~~~~~~~~~~~k~~~lg~~~~~---~~~e~i~~~~~~~~~~  328 (331)
                      +|. ..+.................|.+|++.|||+|++   ++++++.++++||+++
T Consensus       360 ~g~~~~~~~~p~~~~~~~~~~~~~d~~k~~~LGw~p~~~~~~l~~~l~~~~~~~~~~  416 (442)
T PLN02572        360 LGLDVEVISVPNPRVEAEEHYYNAKHTKLCELGLEPHLLSDSLLDSLLNFAVKYKDR  416 (442)
T ss_pred             hCCCCCeeeCCCCcccccccccCccHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHhh
Confidence            662 1211100011112223556789999779999998   8999999999999865

>PLN02206 UDP-glucuronate decarboxylase

Probab=100.00  E-value=5.7e-43  Score=315.77  Aligned_cols=300  Identities=18%  Similarity=0.230  Sum_probs=221.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      ..|||||||||||||++|+++|+++|++|++++|...    ...+.....  .  ...+++++.+|+.++     ++.++
T Consensus       118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~----~~~~~~~~~--~--~~~~~~~i~~D~~~~-----~l~~~  184 (442)
T PLN02206        118 KGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFT----GRKENVMHH--F--SNPNFELIRHDVVEP-----ILLEV  184 (442)
T ss_pred             CCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCc----cchhhhhhh--c--cCCceEEEECCccCh-----hhcCC
Confidence            4579999999999999999999999999999987541    111111100  0  124678889998765     34579


Q ss_pred             cEEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhc
Q 020104           84 TGVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKL  161 (331)
Q Consensus        84 d~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~  161 (331)
                      |+|||+|+....  ...++. ..+++|+.++.+|+++|++.+ + +|||+||..+|+  .....+.+|+.+...    .+
T Consensus       185 D~ViHlAa~~~~~~~~~~p~-~~~~~Nv~gt~nLleaa~~~g-~-r~V~~SS~~VYg--~~~~~p~~E~~~~~~----~P  255 (442)
T PLN02206        185 DQIYHLACPASPVHYKFNPV-KTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSEVYG--DPLQHPQVETYWGNV----NP  255 (442)
T ss_pred             CEEEEeeeecchhhhhcCHH-HHHHHHHHHHHHHHHHHHHhC-C-EEEEECChHHhC--CCCCCCCCccccccC----CC
Confidence            999999986542  223555 889999999999999999998 5 999999999995  333446667643211    11


Q ss_pred             CCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHH-HHHhCCCcc-cccCCC-ccceeHHH
Q 020104          162 DSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSL-ALILGNREE-YGFLLN-TSMVHVDD  238 (331)
Q Consensus       162 ~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~-~~~i~v~D  238 (331)
                      ..+.+.|+.+|..+|+++..+.++++++++++||+++|||+........+..++ ....+.+.. ++.+.+ ++|+|++|
T Consensus       256 ~~~~s~Y~~SK~~aE~~~~~y~~~~g~~~~ilR~~~vyGp~~~~~~~~~v~~~i~~~l~~~~i~i~g~G~~~rdfi~V~D  335 (442)
T PLN02206        256 IGVRSCYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD  335 (442)
T ss_pred             CCccchHHHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCccccchHHHHHHHHHcCCCcEEeCCCCEEEeEEeHHH
Confidence            234678999999999999999888899999999999999985432222333333 334444433 444444 79999999


Q ss_pred             HHHHHHHhhcCCCCCceEEEe-ccccCHHHHHHHHHhhCCC-CCCCCccCCccccCCcCcccCcHHH-HHcCCccccChh
Q 020104          239 VARAHIFLLEYPDAKGRYICS-SHTLTIQEMAEFLSAKYPE-YPIPTVDSLAEIEGYRAPGSSSKKL-LDAGFRYNYGID  315 (331)
Q Consensus       239 ~a~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~k~-~~lg~~~~~~~~  315 (331)
                      +|++++.+++++ .++.||++ ++.+|+.|+++.+.+.++. ..+..  ............+|++|+ +.|||+|+++++
T Consensus       336 va~ai~~a~e~~-~~g~yNIgs~~~~sl~Elae~i~~~~g~~~~i~~--~p~~~~~~~~~~~d~sKa~~~LGw~P~~~l~  412 (442)
T PLN02206        336 LVEGLMRLMEGE-HVGPFNLGNPGEFTMLELAKVVQETIDPNAKIEF--RPNTEDDPHKRKPDITKAKELLGWEPKVSLR  412 (442)
T ss_pred             HHHHHHHHHhcC-CCceEEEcCCCceeHHHHHHHHHHHhCCCCceee--CCCCCCCccccccCHHHHHHHcCCCCCCCHH
Confidence            999999998765 45689975 5789999999999998762 22211  001112234567899999 889999999999


Q ss_pred             hhHHHHHHHHHHc
Q 020104          316 EMFDEAIQCCKEK  328 (331)
Q Consensus       316 e~i~~~~~~~~~~  328 (331)
                      |+|+++++||+..
T Consensus       413 egl~~~~~~~~~~  425 (442)
T PLN02206        413 QGLPLMVKDFRQR  425 (442)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999764

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=100.00  E-value=3.9e-43  Score=312.20  Aligned_cols=300  Identities=19%  Similarity=0.195  Sum_probs=222.8

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      ..+|+|||||||||||++++++|.++||+|++++|...     .  ...   .   ....++++.+|+.|.+.+..++.+
T Consensus        19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~-----~--~~~---~---~~~~~~~~~~Dl~d~~~~~~~~~~   85 (370)
T PLN02695         19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKN-----E--HMS---E---DMFCHEFHLVDLRVMENCLKVTKG   85 (370)
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccc-----c--ccc---c---ccccceEEECCCCCHHHHHHHHhC
Confidence            45689999999999999999999999999999998651     1  000   0   012357788999999888888889


Q ss_pred             ccEEEEecccCC---CCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCC--CCCcccCCCCCChhh
Q 020104           83 CTGVLHVATPVD---FEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDK--DVDMMDETFWSDVDY  157 (331)
Q Consensus        83 ~d~Vih~a~~~~---~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~--~~~~~~E~~~~~~~~  157 (331)
                      +|+|||+|+...   ....++. ...+.|+.++.+++++|++.+ +++|||+||.++|+....  ...++.|++.     
T Consensus        86 ~D~Vih~Aa~~~~~~~~~~~~~-~~~~~N~~~t~nll~aa~~~~-vk~~V~~SS~~vYg~~~~~~~~~~~~E~~~-----  158 (370)
T PLN02695         86 VDHVFNLAADMGGMGFIQSNHS-VIMYNNTMISFNMLEAARING-VKRFFYASSACIYPEFKQLETNVSLKESDA-----  158 (370)
T ss_pred             CCEEEEcccccCCccccccCch-hhHHHHHHHHHHHHHHHHHhC-CCEEEEeCchhhcCCccccCcCCCcCcccC-----
Confidence            999999998653   1223343 567899999999999999998 899999999999963321  1124555541     


Q ss_pred             hhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCC--ccHHHHHH-HHhC-CCc-ccccCCC-c
Q 020104          158 IRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFA--GSVRSSLA-LILG-NRE-EYGFLLN-T  231 (331)
Q Consensus       158 ~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~--~~~~~~~~-~~~~-~~~-~~~~~~~-~  231 (331)
                        .+..|.+.|+.+|..+|++++.++.+++++++++||+++|||+......  .....+.. .... .+. .++.+.+ +
T Consensus       159 --~p~~p~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~g~~~r  236 (370)
T PLN02695        159 --WPAEPQDAYGLEKLATEELCKHYTKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDEFEMWGDGKQTR  236 (370)
T ss_pred             --CCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEECCccCCCCCccccccccHHHHHHHHHcCCCCeEEeCCCCeEE
Confidence              1235678999999999999999988889999999999999997543211  11222332 2222 232 3344444 8


Q ss_pred             cceeHHHHHHHHHHhhcCCCCCceEEEe-ccccCHHHHHHHHHhhCCC-CCCCCccCCccccCCcCcccCcHHH-HHcCC
Q 020104          232 SMVHVDDVARAHIFLLEYPDAKGRYICS-SHTLTIQEMAEFLSAKYPE-YPIPTVDSLAEIEGYRAPGSSSKKL-LDAGF  308 (331)
Q Consensus       232 ~~i~v~D~a~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~k~-~~lg~  308 (331)
                      +|+|++|++++++++++++ .++.||++ ++.+|++|+++.+.+..|. .++..   .+..........|++|+ +.|||
T Consensus       237 ~~i~v~D~a~ai~~~~~~~-~~~~~nv~~~~~~s~~el~~~i~~~~g~~~~i~~---~~~~~~~~~~~~d~sk~~~~lgw  312 (370)
T PLN02695        237 SFTFIDECVEGVLRLTKSD-FREPVNIGSDEMVSMNEMAEIALSFENKKLPIKH---IPGPEGVRGRNSDNTLIKEKLGW  312 (370)
T ss_pred             eEEeHHHHHHHHHHHHhcc-CCCceEecCCCceeHHHHHHHHHHHhCCCCCcee---cCCCCCccccccCHHHHHHhcCC
Confidence            9999999999999988765 46789975 5789999999999988773 22111   11111223446899999 78999


Q ss_pred             ccccChhhhHHHHHHHHHHc
Q 020104          309 RYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       309 ~~~~~~~e~i~~~~~~~~~~  328 (331)
                      +|+++++++|+++++|++++
T Consensus       313 ~p~~~l~e~i~~~~~~~~~~  332 (370)
T PLN02695        313 APTMRLKDGLRITYFWIKEQ  332 (370)
T ss_pred             CCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999764

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=100.00  E-value=6.9e-43  Score=309.62  Aligned_cols=303  Identities=19%  Similarity=0.151  Sum_probs=225.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      +|+|||||||||||+++++.|+++|++|++++|+..     ..... ..+.    ...+++++.+|+.|.+++.++++  
T Consensus         4 ~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~-----~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~   74 (349)
T TIGR02622         4 GKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPP-----TSPNLFELLN----LAKKIEDHFGDIRDAAKLRKAIAEF   74 (349)
T ss_pred             CCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCc-----cchhHHHHHh----hcCCceEEEccCCCHHHHHHHHhhc
Confidence            579999999999999999999999999999998872     22211 1111    11357789999999999999887  


Q ss_pred             CccEEEEecccCC--CCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhh
Q 020104           82 GCTGVLHVATPVD--FEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIR  159 (331)
Q Consensus        82 ~~d~Vih~a~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~  159 (331)
                      ++|+|||+|+...  ....++. ..+++|+.++.++++++++.+.++++|++||..+|+.. ....+++|+++       
T Consensus        75 ~~d~vih~A~~~~~~~~~~~~~-~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~-~~~~~~~e~~~-------  145 (349)
T TIGR02622        75 KPEIVFHLAAQPLVRKSYADPL-ETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRND-EWVWGYRETDP-------  145 (349)
T ss_pred             CCCEEEECCcccccccchhCHH-HHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCC-CCCCCCccCCC-------
Confidence            4799999998543  2333555 88999999999999999876536799999999998522 12235666654       


Q ss_pred             hcCCCCchhHhhHHHHHHHHHHHHHHc-------CCcEEEeccCceeCCCCCCCCCccHHHHHHH-HhCCCcccccCCC-
Q 020104          160 KLDSWGKSYAISKTLTERAALEFAEEH-------GLDLVTLIPSMVVGPFICPKFAGSVRSSLAL-ILGNREEYGFLLN-  230 (331)
Q Consensus       160 ~~~~~~~~Y~~~K~~~e~~~~~~~~~~-------~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-  230 (331)
                        ..|.++|+.+|.++|.+++.++.++       +++++++||+++|||+.... ...+..+... ..+....++.+.+ 
T Consensus       146 --~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~-~~~~~~~~~~~~~g~~~~~~~g~~~  222 (349)
T TIGR02622       146 --LGGHDPYSSSKACAELVIASYRSSFFGVANFHGIKIASARAGNVIGGGDWAE-DRLIPDVIRAFSSNKIVIIRNPDAT  222 (349)
T ss_pred             --CCCCCcchhHHHHHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCCcchh-hhhhHHHHHHHhcCCCeEECCCCcc
Confidence              2457789999999999999887654       89999999999999975321 1233333333 3455555555544 


Q ss_pred             ccceeHHHHHHHHHHhhcCC-----CCCceEEEec---cccCHHHHHHHHHhhCCCCCCCCccCC--ccccCCcCcccCc
Q 020104          231 TSMVHVDDVARAHIFLLEYP-----DAKGRYICSS---HTLTIQEMAEFLSAKYPEYPIPTVDSL--AEIEGYRAPGSSS  300 (331)
Q Consensus       231 ~~~i~v~D~a~~~~~~~~~~-----~~~~~~~~~~---~~~s~~e~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  300 (331)
                      ++|+|++|+|++++.++++.     ..++.||+++   +++|+.|+++.+.+.++...+......  ..........+|+
T Consensus       223 rd~i~v~D~a~a~~~~~~~~~~~~~~~~~~yni~s~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  302 (349)
T TIGR02622       223 RPWQHVLEPLSGYLLLAEKLFTGQAEFAGAWNFGPRASDNARVVELVVDALEFWWGDDAEWEDDSDLNHPHEARLLKLDS  302 (349)
T ss_pred             cceeeHHHHHHHHHHHHHHHhhcCccccceeeeCCCcccCcCHHHHHHHHHHHhcCCCCceeeccCCCCCcccceeecCH
Confidence            89999999999999887642     2357999863   589999999999987763322210010  1112234567899


Q ss_pred             HHH-HHcCCccccChhhhHHHHHHHHHHc
Q 020104          301 KKL-LDAGFRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       301 ~k~-~~lg~~~~~~~~e~i~~~~~~~~~~  328 (331)
                      +|+ +.|||+|+++++++|+++++|+++.
T Consensus       303 ~k~~~~lgw~p~~~l~~gi~~~i~w~~~~  331 (349)
T TIGR02622       303 SKARTLLGWHPRWGLEEAVSRTVDWYKAW  331 (349)
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence            999 7799999999999999999999764

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=100.00  E-value=1.2e-42  Score=307.61  Aligned_cols=305  Identities=19%  Similarity=0.163  Sum_probs=225.1

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccC-C-CCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKN-L-PGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      |+|||||||||||++|+++|++.|++|++++|++...   ....+..+.+ . .....+++++.+|+.|.+++.++++  
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~   77 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSF---NTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEI   77 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCccc---chhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhC
Confidence            5899999999999999999999999999999986210   0111111110 0 0012468899999999999999997  


Q ss_pred             CccEEEEecccCCCC--CCChhhHHHHHHHHHHHHHHHHHHhcCCc---cEEEEecccceeecCCCCCCcccCCCCCChh
Q 020104           82 GCTGVLHVATPVDFE--DKEPEEVITQRAINGTLGILKSCLKSGTV---KRVVYTSSNAAVFYNDKDVDMMDETFWSDVD  156 (331)
Q Consensus        82 ~~d~Vih~a~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~---~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~  156 (331)
                      ++|+|||+|+.....  ..++. ..+++|+.++.+++++|++.+ +   ++|||+||.++|+.  ....+++|+++    
T Consensus        78 ~~d~ViH~Aa~~~~~~~~~~~~-~~~~~n~~gt~~ll~a~~~~~-~~~~~~~v~~SS~~vyg~--~~~~~~~E~~~----  149 (343)
T TIGR01472        78 KPTEIYNLAAQSHVKVSFEIPE-YTADVDGIGTLRLLEAVRTLG-LIKSVKFYQASTSELYGK--VQEIPQNETTP----  149 (343)
T ss_pred             CCCEEEECCcccccchhhhChH-HHHHHHHHHHHHHHHHHHHhC-CCcCeeEEEeccHHhhCC--CCCCCCCCCCC----
Confidence            479999999975522  22343 677899999999999999877 4   38999999999963  33446777764    


Q ss_pred             hhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCC-CCccHHHHHH-HHhCCCc--ccccCCC-c
Q 020104          157 YIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPK-FAGSVRSSLA-LILGNRE--EYGFLLN-T  231 (331)
Q Consensus       157 ~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~-~~~~~~~~~~-~~~~~~~--~~~~~~~-~  231 (331)
                           ..|.++|+.||..+|.+++.++.++++++++.|+.++|||+.... ....+..+.. ...+...  .++.+.+ +
T Consensus       150 -----~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~r  224 (343)
T TIGR01472       150 -----FYPRSPYAAAKLYAHWITVNYREAYGLFAVNGILFNHESPRRGENFVTRKITRAAAKIKLGLQEKLYLGNLDAKR  224 (343)
T ss_pred             -----CCCCChhHHHHHHHHHHHHHHHHHhCCceEEEeecccCCCCCCccccchHHHHHHHHHHcCCCCceeeCCCcccc
Confidence                 346789999999999999999988899999999999999975432 2222333332 3334432  3344444 8


Q ss_pred             cceeHHHHHHHHHHhhcCCCCCceEEE-eccccCHHHHHHHHHhhCCCC-CC----------CC--------ccCC-ccc
Q 020104          232 SMVHVDDVARAHIFLLEYPDAKGRYIC-SSHTLTIQEMAEFLSAKYPEY-PI----------PT--------VDSL-AEI  290 (331)
Q Consensus       232 ~~i~v~D~a~~~~~~~~~~~~~~~~~~-~~~~~s~~e~~~~i~~~~~~~-~~----------~~--------~~~~-~~~  290 (331)
                      +|+|++|+|++++.+++++. ++.||+ +++++|++|+++.+.+.+|.. ..          +.        .... .+.
T Consensus       225 d~i~V~D~a~a~~~~~~~~~-~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (343)
T TIGR01472       225 DWGHAKDYVEAMWLMLQQDK-PDDYVIATGETHSVREFVEVSFEYIGKTLNWKDKGINEVGRCKETGKVHVEIDPRYFRP  303 (343)
T ss_pred             CceeHHHHHHHHHHHHhcCC-CccEEecCCCceeHHHHHHHHHHHcCCCcccccccccccccccccCceeEEeCccccCC
Confidence            99999999999999998753 468986 568899999999999988721 10          00        0000 011


Q ss_pred             cCCcCcccCcHHH-HHcCCccccChhhhHHHHHHHHHH
Q 020104          291 EGYRAPGSSSKKL-LDAGFRYNYGIDEMFDEAIQCCKE  327 (331)
Q Consensus       291 ~~~~~~~~~~~k~-~~lg~~~~~~~~e~i~~~~~~~~~  327 (331)
                      ........|++|+ +.|||+|+++++|+|+++++++++
T Consensus       304 ~~~~~~~~d~~k~~~~lgw~p~~~l~egi~~~~~~~~~  341 (343)
T TIGR01472       304 TEVDLLLGDATKAKEKLGWKPEVSFEKLVKEMVEEDLE  341 (343)
T ss_pred             CccchhcCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHh
Confidence            2233456799999 889999999999999999999875

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4.7e-43  Score=281.59  Aligned_cols=304  Identities=21%  Similarity=0.225  Sum_probs=231.1

Q ss_pred             CceEEEecCcchhHHHHHHHHHHC--CCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDH--GYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .++++||||+||||++.+..+...  .+..+.++.=.      -...+..+++.. ..++..++.+|+.+...+.-++. 
T Consensus         6 ~~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~------~~s~~~~l~~~~-n~p~ykfv~~di~~~~~~~~~~~~   78 (331)
T KOG0747|consen    6 EKNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLD------YCSNLKNLEPVR-NSPNYKFVEGDIADADLVLYLFET   78 (331)
T ss_pred             cceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecc------cccccchhhhhc-cCCCceEeeccccchHHHHhhhcc
Confidence            478999999999999999999876  34444333211      111133333221 23788999999999988887774 


Q ss_pred             -CccEEEEecccCC--CCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhh
Q 020104           82 -GCTGVLHVATPVD--FEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYI  158 (331)
Q Consensus        82 -~~d~Vih~a~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~  158 (331)
                       ++|.|||.|+..+  ....++. +....|+.++..|+++++..+++++|||+||..|||..+.. ....|.+       
T Consensus        79 ~~id~vihfaa~t~vd~s~~~~~-~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGds~~~-~~~~E~s-------  149 (331)
T KOG0747|consen   79 EEIDTVIHFAAQTHVDRSFGDSF-EFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSDED-AVVGEAS-------  149 (331)
T ss_pred             CchhhhhhhHhhhhhhhhcCchH-HHhcCCchhhhhHHHHHHhccCeeEEEEecccceecCcccc-ccccccc-------
Confidence             7999999998665  3444666 88999999999999999999779999999999999743322 1222555       


Q ss_pred             hhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHH-HHhCCC-cccccCCC-cccee
Q 020104          159 RKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLA-LILGNR-EEYGFLLN-TSMVH  235 (331)
Q Consensus       159 ~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~-~~~i~  235 (331)
                        ++.|.++|+.+|+++|..++.|.+.++++++++|.++||||++.+  ...+..++. +..+.+ ...+.+.+ ++|+|
T Consensus       150 --~~nPtnpyAasKaAaE~~v~Sy~~sy~lpvv~~R~nnVYGP~q~~--~klipkFi~l~~~~~~~~i~g~g~~~rs~l~  225 (331)
T KOG0747|consen  150 --LLNPTNPYAASKAAAEMLVRSYGRSYGLPVVTTRMNNVYGPNQYP--EKLIPKFIKLAMRGKEYPIHGDGLQTRSYLY  225 (331)
T ss_pred             --cCCCCCchHHHHHHHHHHHHHHhhccCCcEEEEeccCccCCCcCh--HHHhHHHHHHHHhCCCcceecCcccceeeEe
Confidence              367899999999999999999999999999999999999998765  234444444 333443 44555555 89999


Q ss_pred             HHHHHHHHHHhhcCCCCCceEEE-eccccCHHHHHHHHHhhCC----CCCCCCccC-Cccc-cCCcCcccCcHHHHHcCC
Q 020104          236 VDDVARAHIFLLEYPDAKGRYIC-SSHTLTIQEMAEFLSAKYP----EYPIPTVDS-LAEI-EGYRAPGSSSKKLLDAGF  308 (331)
Q Consensus       236 v~D~a~~~~~~~~~~~~~~~~~~-~~~~~s~~e~~~~i~~~~~----~~~~~~~~~-~~~~-~~~~~~~~~~~k~~~lg~  308 (331)
                      ++|+++++..++++...|++||+ ++.+.+..|+++.+.+.+.    ....++... .... .......++.+|++.|||
T Consensus       226 veD~~ea~~~v~~Kg~~geIYNIgtd~e~~~~~l~k~i~eli~~~~~~~~~~p~~~~v~dRp~nd~Ry~~~~eKik~LGw  305 (331)
T KOG0747|consen  226 VEDVSEAFKAVLEKGELGEIYNIGTDDEMRVIDLAKDICELFEKRLPNIDTEPFIFFVEDRPYNDLRYFLDDEKIKKLGW  305 (331)
T ss_pred             HHHHHHHHHHHHhcCCccceeeccCcchhhHHHHHHHHHHHHHHhccCCCCCCcceecCCCCcccccccccHHHHHhcCC
Confidence            99999999999999878999996 5678999999998887443    233332111 1111 334457899999999999


Q ss_pred             ccccChhhhHHHHHHHHHHc
Q 020104          309 RYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       309 ~~~~~~~e~i~~~~~~~~~~  328 (331)
                      +|+++|++|++.+++||.++
T Consensus       306 ~~~~p~~eGLrktie~y~~~  325 (331)
T KOG0747|consen  306 RPTTPWEEGLRKTIEWYTKN  325 (331)
T ss_pred             cccCcHHHHHHHHHHHHHhh
Confidence            99999999999999999664

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=100.00  E-value=1.8e-42  Score=329.08  Aligned_cols=307  Identities=19%  Similarity=0.252  Sum_probs=227.3

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHC-CCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCcc-HHHHhc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDH-GYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDG-FDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~~~~   81 (331)
                      .+|+|||||||||||++|+++|+++ ||+|++++|...     ....   +..    ..+++++.+|++|..+ +.++++
T Consensus       314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~-----~~~~---~~~----~~~~~~~~gDl~d~~~~l~~~l~  381 (660)
T PRK08125        314 RRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSD-----AISR---FLG----HPRFHFVEGDISIHSEWIEYHIK  381 (660)
T ss_pred             cCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCch-----hhhh---hcC----CCceEEEeccccCcHHHHHHHhc
Confidence            4679999999999999999999986 799999999762     1111   111    1468999999998765 567788


Q ss_pred             CccEEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhh
Q 020104           82 GCTGVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIR  159 (331)
Q Consensus        82 ~~d~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~  159 (331)
                      ++|+|||+|+....  ...++. ..+++|+.++.+++++|++.+  ++|||+||.++|+.  ....+++|+++...  ..
T Consensus       382 ~~D~ViHlAa~~~~~~~~~~~~-~~~~~Nv~~t~~ll~a~~~~~--~~~V~~SS~~vyg~--~~~~~~~E~~~~~~--~~  454 (660)
T PRK08125        382 KCDVVLPLVAIATPIEYTRNPL-RVFELDFEENLKIIRYCVKYN--KRIIFPSTSEVYGM--CTDKYFDEDTSNLI--VG  454 (660)
T ss_pred             CCCEEEECccccCchhhccCHH-HHHHhhHHHHHHHHHHHHhcC--CeEEEEcchhhcCC--CCCCCcCccccccc--cC
Confidence            99999999986542  234555 788999999999999999987  69999999999963  33456788775311  11


Q ss_pred             hcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCC------CCccHHHHHH-HHhCCCcc-cccCCC-
Q 020104          160 KLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPK------FAGSVRSSLA-LILGNREE-YGFLLN-  230 (331)
Q Consensus       160 ~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~------~~~~~~~~~~-~~~~~~~~-~~~~~~-  230 (331)
                      +...|.+.|+.+|.++|++++.+++.++++++++||+++|||+....      ....+..+.. ...+.+.. .+.+.+ 
T Consensus       455 p~~~p~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~i~~~i~~~~~~~~i~~~g~g~~~  534 (660)
T PRK08125        455 PINKQRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLVDGGKQK  534 (660)
T ss_pred             CCCCCccchHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCCccccccccccccchHHHHHHHhcCCCCeEEeCCCcee
Confidence            22245678999999999999999988899999999999999975421      0122333333 33344433 344444 


Q ss_pred             ccceeHHHHHHHHHHhhcCCC---CCceEEEec-c-ccCHHHHHHHHHhhCCCCC----CCCccCCcc----------cc
Q 020104          231 TSMVHVDDVARAHIFLLEYPD---AKGRYICSS-H-TLTIQEMAEFLSAKYPEYP----IPTVDSLAE----------IE  291 (331)
Q Consensus       231 ~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~-~-~~s~~e~~~~i~~~~~~~~----~~~~~~~~~----------~~  291 (331)
                      ++|+|++|+|++++.+++++.   .+++||+++ + .+|++|+++.+.+..+...    ++....+..          ..
T Consensus       535 rd~i~v~Dva~a~~~~l~~~~~~~~g~iyni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  614 (660)
T PRK08125        535 RCFTDIRDGIEALFRIIENKDNRCDGQIINIGNPDNEASIRELAEMLLASFEKHPLRDHFPPFAGFRVVESSSYYGKGYQ  614 (660)
T ss_pred             eceeeHHHHHHHHHHHHhccccccCCeEEEcCCCCCceeHHHHHHHHHHHhccCcccccCCccccccccccccccccccc
Confidence            899999999999999998752   356899765 4 6999999999999877321    111100000          01


Q ss_pred             CCcCcccCcHHH-HHcCCccccChhhhHHHHHHHHHHcC
Q 020104          292 GYRAPGSSSKKL-LDAGFRYNYGIDEMFDEAIQCCKEKG  329 (331)
Q Consensus       292 ~~~~~~~~~~k~-~~lg~~~~~~~~e~i~~~~~~~~~~~  329 (331)
                      .......|++|+ +.|||+|+++++|+|+++++|++++.
T Consensus       615 ~~~~~~~d~~ka~~~LGw~P~~~lee~l~~~i~~~~~~~  653 (660)
T PRK08125        615 DVEHRKPSIRNARRLLDWEPKIDMQETIDETLDFFLRTV  653 (660)
T ss_pred             cccccCCChHHHHHHhCCCCCCcHHHHHHHHHHHHHhcc
Confidence            223456799999 88999999999999999999998775

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=100.00  E-value=2e-41  Score=299.48  Aligned_cols=307  Identities=16%  Similarity=0.150  Sum_probs=226.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccC-CCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKN-LPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      ++|+|||||||||||++++++|+++|++|++++|+.....   ...+..+.. ......+++++.+|+.|.+++.++++ 
T Consensus         5 ~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~   81 (340)
T PLN02653          5 PRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFN---TQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDD   81 (340)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeccccccc---ccchhhhccccccccCceEEEEecCCCHHHHHHHHHH
Confidence            4578999999999999999999999999999998762110   111221111 00112468899999999999999887 


Q ss_pred             -CccEEEEecccCCCC--CCChhhHHHHHHHHHHHHHHHHHHhcCCcc-----EEEEecccceeecCCCCCCcccCCCCC
Q 020104           82 -GCTGVLHVATPVDFE--DKEPEEVITQRAINGTLGILKSCLKSGTVK-----RVVYTSSNAAVFYNDKDVDMMDETFWS  153 (331)
Q Consensus        82 -~~d~Vih~a~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-----~~v~~SS~~~~~~~~~~~~~~~E~~~~  153 (331)
                       ++|+|||+|+.....  ..++. ..+++|+.++.+++++|++.+ ++     +||++||.++|+..  .. +++|+++ 
T Consensus        82 ~~~d~Vih~A~~~~~~~~~~~~~-~~~~~N~~gt~~ll~~~~~~~-~~~~~~~~~v~~Ss~~vyg~~--~~-~~~E~~~-  155 (340)
T PLN02653         82 IKPDEVYNLAAQSHVAVSFEMPD-YTADVVATGALRLLEAVRLHG-QETGRQIKYYQAGSSEMYGST--PP-PQSETTP-  155 (340)
T ss_pred             cCCCEEEECCcccchhhhhhChh-HHHHHHHHHHHHHHHHHHHhc-cccccceeEEEeccHHHhCCC--CC-CCCCCCC-
Confidence             479999999975422  23444 677999999999999999887 54     89999999999632  22 6778774 


Q ss_pred             ChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCC-CccHHHHHH-HHhCCCcc--cccCC
Q 020104          154 DVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKF-AGSVRSSLA-LILGNREE--YGFLL  229 (331)
Q Consensus       154 ~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~-~~~~~~~~~-~~~~~~~~--~~~~~  229 (331)
                              ..|.++|+.+|.++|.+++.++.+++++++..|+.++|||+..... ...+..+.. ...+.+..  .+.+.
T Consensus       156 --------~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~  227 (340)
T PLN02653        156 --------FHPRSPYAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKVGLQKKLFLGNLD  227 (340)
T ss_pred             --------CCCCChhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCCcccchhHHHHHHHHHHcCCCCceEeCCCc
Confidence                    2467789999999999999999888999999999999999754322 222222222 22344332  24444


Q ss_pred             C-ccceeHHHHHHHHHHhhcCCCCCceEEE-eccccCHHHHHHHHHhhCCCC---CCCCccCCccccCCcCcccCcHHH-
Q 020104          230 N-TSMVHVDDVARAHIFLLEYPDAKGRYIC-SSHTLTIQEMAEFLSAKYPEY---PIPTVDSLAEIEGYRAPGSSSKKL-  303 (331)
Q Consensus       230 ~-~~~i~v~D~a~~~~~~~~~~~~~~~~~~-~~~~~s~~e~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~k~-  303 (331)
                      + ++|+|++|+|++++.+++++. ++.||+ +++++|++|+++.+.+..+..   .+.................|++|+ 
T Consensus       228 ~~rd~i~v~D~a~a~~~~~~~~~-~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~  306 (340)
T PLN02653        228 ASRDWGFAGDYVEAMWLMLQQEK-PDDYVVATEESHTVEEFLEEAFGYVGLNWKDHVEIDPRYFRPAEVDNLKGDASKAR  306 (340)
T ss_pred             ceecceeHHHHHHHHHHHHhcCC-CCcEEecCCCceeHHHHHHHHHHHcCCCCCcceeeCcccCCccccccccCCHHHHH
Confidence            4 899999999999999998753 578986 567899999999999988731   111100111112334556799999 


Q ss_pred             HHcCCccccChhhhHHHHHHHHHHc
Q 020104          304 LDAGFRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       304 ~~lg~~~~~~~~e~i~~~~~~~~~~  328 (331)
                      +.|||+|+++++|+|+++++|+++.
T Consensus       307 ~~lgw~p~~~l~~gi~~~~~~~~~~  331 (340)
T PLN02653        307 EVLGWKPKVGFEQLVKMMVDEDLEL  331 (340)
T ss_pred             HHhCCCCCCCHHHHHHHHHHHHHHh
Confidence            8899999999999999999998753

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=100.00  E-value=1.9e-41  Score=323.78  Aligned_cols=307  Identities=19%  Similarity=0.223  Sum_probs=226.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHC--CCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDH--GYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI-   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-   80 (331)
                      .+|+|||||||||||++|+++|+++  +++|++++|..      .......+... ....+++++.+|+.|.+.+..++ 
T Consensus         5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~------~~~~~~~l~~~-~~~~~v~~~~~Dl~d~~~~~~~~~   77 (668)
T PLN02260          5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLD------YCSNLKNLNPS-KSSPNFKFVKGDIASADLVNYLLI   77 (668)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCC------ccchhhhhhhc-ccCCCeEEEECCCCChHHHHHHHh
Confidence            3579999999999999999999987  68999888753      11111111110 01257899999999998887766 


Q ss_pred             -cCccEEEEecccCCCC--CCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCC-CcccCCCCCChh
Q 020104           81 -AGCTGVLHVATPVDFE--DKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDV-DMMDETFWSDVD  156 (331)
Q Consensus        81 -~~~d~Vih~a~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~-~~~~E~~~~~~~  156 (331)
                       .++|+|||+|+.....  ..++. +.+++|+.++.+++++|++.+.+++|||+||..+|+...... .+.+|+++    
T Consensus        78 ~~~~D~ViHlAa~~~~~~~~~~~~-~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~~~~E~~~----  152 (668)
T PLN02260         78 TEGIDTIMHFAAQTHVDNSFGNSF-EFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDADVGNHEASQ----  152 (668)
T ss_pred             hcCCCEEEECCCccCchhhhhCHH-HHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccccccCccccCC----
Confidence             5799999999976532  22344 788999999999999999986578999999999996332111 12244442    


Q ss_pred             hhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHH-HhCCCc-ccccCCC-ccc
Q 020104          157 YIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLAL-ILGNRE-EYGFLLN-TSM  233 (331)
Q Consensus       157 ~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~-~~~  233 (331)
                           ..|.++|+.+|..+|.+++.+.++++++++++||+++|||+....  ..+..+... ..+.+. .++.+.. ++|
T Consensus       153 -----~~p~~~Y~~sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~~~~--~~i~~~~~~a~~g~~i~i~g~g~~~r~~  225 (668)
T PLN02260        153 -----LLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPE--KLIPKFILLAMQGKPLPIHGDGSNVRSY  225 (668)
T ss_pred             -----CCCCCCcHHHHHHHHHHHHHHHHHcCCCEEEECcccccCcCCCcc--cHHHHHHHHHhCCCCeEEecCCCceEee
Confidence                 245778999999999999999888899999999999999986432  233333332 334433 3344444 799


Q ss_pred             eeHHHHHHHHHHhhcCCCCCceEEEe-ccccCHHHHHHHHHhhCCCCCCCCccC-CccccCCcCcccCcHHHHHcCCccc
Q 020104          234 VHVDDVARAHIFLLEYPDAKGRYICS-SHTLTIQEMAEFLSAKYPEYPIPTVDS-LAEIEGYRAPGSSSKKLLDAGFRYN  311 (331)
Q Consensus       234 i~v~D~a~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~~lg~~~~  311 (331)
                      +|++|+|+++..++++...+++||++ ++.+|+.|+++.+.+.+|......... ..+........+|++|++.|||+|+
T Consensus       226 ihV~Dva~a~~~~l~~~~~~~vyni~~~~~~s~~el~~~i~~~~g~~~~~~i~~~~~~p~~~~~~~~d~~k~~~lGw~p~  305 (668)
T PLN02260        226 LYCEDVAEAFEVVLHKGEVGHVYNIGTKKERRVIDVAKDICKLFGLDPEKSIKFVENRPFNDQRYFLDDQKLKKLGWQER  305 (668)
T ss_pred             EEHHHHHHHHHHHHhcCCCCCEEEECCCCeeEHHHHHHHHHHHhCCCCcceeeecCCCCCCcceeecCHHHHHHcCCCCC
Confidence            99999999999999877677899975 578999999999999887321110000 0111223355689999988999999


Q ss_pred             cChhhhHHHHHHHHHHcC
Q 020104          312 YGIDEMFDEAIQCCKEKG  329 (331)
Q Consensus       312 ~~~~e~i~~~~~~~~~~~  329 (331)
                      ++++|+++++++||++++
T Consensus       306 ~~~~egl~~~i~w~~~~~  323 (668)
T PLN02260        306 TSWEEGLKKTMEWYTSNP  323 (668)
T ss_pred             CCHHHHHHHHHHHHHhCh
Confidence            999999999999998764

>PLN02240 UDP-glucose 4-epimerase

Probab=100.00  E-value=2.2e-41  Score=300.91  Aligned_cols=311  Identities=22%  Similarity=0.272  Sum_probs=226.4

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCC-CCCCcEEEEeCCCCCCccHHHH
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLP-GASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      |+.++|+|+|||||||||++|+++|++.|++|++++|...    ........+.... ....+++++.+|+.|++++.++
T Consensus         1 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~   76 (352)
T PLN02240          1 MSLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDN----SSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKV   76 (352)
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCc----chHHHHHHHHHhhcccCccceEEecCcCCHHHHHHH
Confidence            6777789999999999999999999999999999987641    1111111111110 1124688999999999999888


Q ss_pred             hc--CccEEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCCh
Q 020104           80 IA--GCTGVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDV  155 (331)
Q Consensus        80 ~~--~~d~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~  155 (331)
                      ++  ++|+|||+|+....  ...++. ..+++|+.++.+++++|++.+ +++||++||..+|+  .....+++|+++.  
T Consensus        77 ~~~~~~d~vih~a~~~~~~~~~~~~~-~~~~~n~~~~~~l~~~~~~~~-~~~~v~~Ss~~vyg--~~~~~~~~E~~~~--  150 (352)
T PLN02240         77 FASTRFDAVIHFAGLKAVGESVAKPL-LYYDNNLVGTINLLEVMAKHG-CKKLVFSSSATVYG--QPEEVPCTEEFPL--  150 (352)
T ss_pred             HHhCCCCEEEEccccCCccccccCHH-HHHHHHHHHHHHHHHHHHHcC-CCEEEEEccHHHhC--CCCCCCCCCCCCC--
Confidence            86  68999999986542  223454 789999999999999999988 89999999998885  3345678888752  


Q ss_pred             hhhhhcCCCCchhHhhHHHHHHHHHHHHHH-cCCcEEEeccCceeCCCCCC-------CCCccH-HHHHHHHhCCCc---
Q 020104          156 DYIRKLDSWGKSYAISKTLTERAALEFAEE-HGLDLVTLIPSMVVGPFICP-------KFAGSV-RSSLALILGNRE---  223 (331)
Q Consensus       156 ~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~-~~~~~~ilRp~~v~G~~~~~-------~~~~~~-~~~~~~~~~~~~---  223 (331)
                             .|.++|+.+|..+|++++.++.. .+++++++|++++||++...       .....+ ..+.....+...   
T Consensus       151 -------~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~R~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (352)
T PLN02240        151 -------SATNPYGRTKLFIEEICRDIHASDPEWKIILLRYFNPVGAHPSGRIGEDPKGIPNNLMPYVQQVAVGRRPELT  223 (352)
T ss_pred             -------CCCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEeecCcCCCCccccccCCCCCCcchHHHHHHHHHhCCCCceE
Confidence                   44678999999999999988754 57999999999999975321       111122 222233333322   


Q ss_pred             ccc------cCCC-ccceeHHHHHHHHHHhhcCC----C-CCceEEE-eccccCHHHHHHHHHhhCCCCCCCCccCCccc
Q 020104          224 EYG------FLLN-TSMVHVDDVARAHIFLLEYP----D-AKGRYIC-SSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEI  290 (331)
Q Consensus       224 ~~~------~~~~-~~~i~v~D~a~~~~~~~~~~----~-~~~~~~~-~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~  290 (331)
                      .++      .+.. ++|+|++|+|++++.++.+.    . .+++||+ +++++|++|+++.+.+.++. +.+......+.
T Consensus       224 ~~g~~~~~~~g~~~~~~i~v~D~a~a~~~a~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~-~~~~~~~~~~~  302 (352)
T PLN02240        224 VFGNDYPTKDGTGVRDYIHVMDLADGHIAALRKLFTDPDIGCEAYNLGTGKGTSVLEMVAAFEKASGK-KIPLKLAPRRP  302 (352)
T ss_pred             EeCCCCCCCCCCEEEeeEEHHHHHHHHHHHHhhhhhccCCCCceEEccCCCcEeHHHHHHHHHHHhCC-CCCceeCCCCC
Confidence            121      2233 79999999999998887642    2 2468996 57889999999999998872 22220011111


Q ss_pred             cCCcCcccCcHHH-HHcCCccccChhhhHHHHHHHHHHcC
Q 020104          291 EGYRAPGSSSKKL-LDAGFRYNYGIDEMFDEAIQCCKEKG  329 (331)
Q Consensus       291 ~~~~~~~~~~~k~-~~lg~~~~~~~~e~i~~~~~~~~~~~  329 (331)
                      ........|++|+ +.|||+|+++++|+|+++++|+++++
T Consensus       303 ~~~~~~~~d~~k~~~~lg~~p~~~l~~~l~~~~~~~~~~~  342 (352)
T PLN02240        303 GDAEEVYASTEKAEKELGWKAKYGIDEMCRDQWNWASKNP  342 (352)
T ss_pred             CChhhhhcCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCc
Confidence            2233456799999 88999999999999999999998875

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=100.00  E-value=2.8e-41  Score=300.09  Aligned_cols=304  Identities=18%  Similarity=0.195  Sum_probs=220.5

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCe-EEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--C
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYS-VTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--G   82 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~   82 (331)
                      |||||||||||||++++++|+++|++ |+++.|....   ........+   . ...+++++.+|+.|.+++.++++  +
T Consensus         1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~---~~~~~~~~~---~-~~~~~~~~~~Dl~d~~~~~~~~~~~~   73 (352)
T PRK10084          1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYA---GNLESLADV---S-DSERYVFEHADICDRAELDRIFAQHQ   73 (352)
T ss_pred             CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCcc---chHHHHHhc---c-cCCceEEEEecCCCHHHHHHHHHhcC
Confidence            48999999999999999999999976 5545543200   011111111   1 01457889999999999999986  4


Q ss_pred             ccEEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhc--------CCccEEEEecccceeecCCCCC--------
Q 020104           83 CTGVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKS--------GTVKRVVYTSSNAAVFYNDKDV--------  144 (331)
Q Consensus        83 ~d~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~--------~~~~~~v~~SS~~~~~~~~~~~--------  144 (331)
                      +|+|||+|+....  ...++. ..+++|+.++.+++++|++.        +.+++|||+||.++|+......        
T Consensus        74 ~d~vih~A~~~~~~~~~~~~~-~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~  152 (352)
T PRK10084         74 PDAVMHLAAESHVDRSITGPA-AFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEEL  152 (352)
T ss_pred             CCEEEECCcccCCcchhcCch-hhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccC
Confidence            8999999987542  123344 89999999999999999874        1257999999999996321111        


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHH-HHHhCCC-
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSL-ALILGNR-  222 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~~~~~-  222 (331)
                      .+++|+++         ..|.+.|+.+|.++|.+++.++++++++++++|++.+|||+....  ..+..+. ....+.. 
T Consensus       153 ~~~~E~~~---------~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~~~~--~~~~~~~~~~~~~~~~  221 (352)
T PRK10084        153 PLFTETTA---------YAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPE--KLIPLVILNALEGKPL  221 (352)
T ss_pred             CCccccCC---------CCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCcCcc--chHHHHHHHHhcCCCe
Confidence            23566653         356778999999999999999888899999999999999985321  2233332 2333444 


Q ss_pred             cccccCCC-ccceeHHHHHHHHHHhhcCCCCCceEEEe-ccccCHHHHHHHHHhhCCCC-C--CCCccCCc----cccCC
Q 020104          223 EEYGFLLN-TSMVHVDDVARAHIFLLEYPDAKGRYICS-SHTLTIQEMAEFLSAKYPEY-P--IPTVDSLA----EIEGY  293 (331)
Q Consensus       223 ~~~~~~~~-~~~i~v~D~a~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~i~~~~~~~-~--~~~~~~~~----~~~~~  293 (331)
                      ..++.+.. ++|+|++|+|++++.+++++..++.||++ ++.+|++|+++.+.+..+.. +  .+....+.    .....
T Consensus       222 ~~~~~g~~~~~~v~v~D~a~a~~~~l~~~~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~~  301 (352)
T PRK10084        222 PIYGKGDQIRDWLYVEDHARALYKVVTEGKAGETYNIGGHNEKKNLDVVLTICDLLDEIVPKATSYREQITYVADRPGHD  301 (352)
T ss_pred             EEeCCCCeEEeeEEHHHHHHHHHHHHhcCCCCceEEeCCCCcCcHHHHHHHHHHHhccccccccchhhhccccccCCCCC
Confidence            23444444 89999999999999999876667899975 57899999999999887631 1  11100110    01122


Q ss_pred             cCcccCcHHH-HHcCCccccChhhhHHHHHHHHHHc
Q 020104          294 RAPGSSSKKL-LDAGFRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       294 ~~~~~~~~k~-~~lg~~~~~~~~e~i~~~~~~~~~~  328 (331)
                      ....+|++|+ +.+||+|+++++++|+++++|++++
T Consensus       302 ~~~~~d~~k~~~~lg~~p~~~l~~~l~~~~~~~~~~  337 (352)
T PRK10084        302 RRYAIDASKISRELGWKPQETFESGIRKTVEWYLAN  337 (352)
T ss_pred             ceeeeCHHHHHHHcCCCCcCCHHHHHHHHHHHHHhC
Confidence            3456899999 7799999999999999999999875

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=100.00  E-value=1.1e-40  Score=293.72  Aligned_cols=301  Identities=32%  Similarity=0.431  Sum_probs=228.5

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCccE
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTG   85 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~   85 (331)
                      |+|+||||+||||+++++.|+++|++|++++|++.     ....+   .     ..+++++.+|+.|.+++.++++++|+
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~-----~~~~~---~-----~~~~~~~~~D~~~~~~l~~~~~~~d~   67 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTS-----DRRNL---E-----GLDVEIVEGDLRDPASLRKAVAGCRA   67 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCc-----ccccc---c-----cCCceEEEeeCCCHHHHHHHHhCCCE
Confidence            47999999999999999999999999999999872     21111   1     13688999999999999999999999


Q ss_pred             EEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCCCC
Q 020104           86 VLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWG  165 (331)
Q Consensus        86 Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~  165 (331)
                      |||+|+.......++. ..++.|+.++.++++++++.+ ++++|++||.++|+. .....+++|+++..      +..+.
T Consensus        68 vi~~a~~~~~~~~~~~-~~~~~n~~~~~~l~~~~~~~~-~~~~v~~SS~~~~~~-~~~~~~~~e~~~~~------~~~~~  138 (328)
T TIGR03466        68 LFHVAADYRLWAPDPE-EMYAANVEGTRNLLRAALEAG-VERVVYTSSVATLGV-RGDGTPADETTPSS------LDDMI  138 (328)
T ss_pred             EEEeceecccCCCCHH-HHHHHHHHHHHHHHHHHHHhC-CCeEEEEechhhcCc-CCCCCCcCccCCCC------ccccc
Confidence            9999986554444555 889999999999999999988 899999999999863 23345677876421      11224


Q ss_pred             chhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHHHHHHHHHH
Q 020104          166 KSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIF  245 (331)
Q Consensus       166 ~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~  245 (331)
                      +.|+.+|.++|++++.+..+++++++++||+.+||++....... -..+.....+....+. ....+|+|++|+|++++.
T Consensus       139 ~~Y~~sK~~~e~~~~~~~~~~~~~~~ilR~~~~~G~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~i~v~D~a~a~~~  216 (328)
T TIGR03466       139 GHYKRSKFLAEQAALEMAAEKGLPVVIVNPSTPIGPRDIKPTPT-GRIIVDFLNGKMPAYV-DTGLNLVHVDDVAEGHLL  216 (328)
T ss_pred             ChHHHHHHHHHHHHHHHHHhcCCCEEEEeCCccCCCCCCCCCcH-HHHHHHHHcCCCceee-CCCcceEEHHHHHHHHHH
Confidence            57999999999999999888899999999999999985432111 1111222222222222 223689999999999999


Q ss_pred             hhcCCCCCceEEEeccccCHHHHHHHHHhhCCCC----CCCCccC-------------Ccccc---------CCcCcccC
Q 020104          246 LLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEY----PIPTVDS-------------LAEIE---------GYRAPGSS  299 (331)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~~~~----~~~~~~~-------------~~~~~---------~~~~~~~~  299 (331)
                      +++++..+..|+++++.+|++|+++.+.+.+|..    .+|.+..             .....         ......+|
T Consensus       217 ~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  296 (328)
T TIGR03466       217 ALERGRIGERYILGGENLTLKQILDKLAEITGRPAPRVKLPRWLLLPVAWGAEALARLTGKEPRVTVDGVRMAKKKMFFS  296 (328)
T ss_pred             HHhCCCCCceEEecCCCcCHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhccCCCC
Confidence            9988766667888888999999999999988732    1211000             00000         01355789


Q ss_pred             cHHH-HHcCCccccChhhhHHHHHHHHHHcCCC
Q 020104          300 SKKL-LDAGFRYNYGIDEMFDEAIQCCKEKGYL  331 (331)
Q Consensus       300 ~~k~-~~lg~~~~~~~~e~i~~~~~~~~~~~~~  331 (331)
                      ++|+ +.|||+|+ +++++|+++++||+++|+|
T Consensus       297 ~~k~~~~lg~~p~-~~~~~i~~~~~~~~~~~~~  328 (328)
T TIGR03466       297 SAKAVRELGYRQR-PAREALRDAVEWFRANGYL  328 (328)
T ss_pred             hHHHHHHcCCCCc-CHHHHHHHHHHHHHHhCCC
Confidence            9999 88999997 9999999999999999875

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=1.2e-41  Score=273.24  Aligned_cols=301  Identities=19%  Similarity=0.234  Sum_probs=239.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      ..++|+||||.||||+|||+.|...||+|++++--..    .....+..    -..+++++.+.-|+..+     ++.++
T Consensus        26 ~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ft----g~k~n~~~----~~~~~~fel~~hdv~~p-----l~~ev   92 (350)
T KOG1429|consen   26 QNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFT----GRKENLEH----WIGHPNFELIRHDVVEP-----LLKEV   92 (350)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccc----cchhhcch----hccCcceeEEEeechhH-----HHHHh
Confidence            4579999999999999999999999999999986441    11111111    12246788888887654     77889


Q ss_pred             cEEEEecccCCCC--CCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhc
Q 020104           84 TGVLHVATPVDFE--DKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKL  161 (331)
Q Consensus        84 d~Vih~a~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~  161 (331)
                      |.|+|+|++.+..  -.+|. ..+..|+.++.+++-.|++.+  +||++.||+.||+  ++...|..|+.|.+...    
T Consensus        93 D~IyhLAapasp~~y~~npv-ktIktN~igtln~lglakrv~--aR~l~aSTseVYg--dp~~hpq~e~ywg~vnp----  163 (350)
T KOG1429|consen   93 DQIYHLAAPASPPHYKYNPV-KTIKTNVIGTLNMLGLAKRVG--ARFLLASTSEVYG--DPLVHPQVETYWGNVNP----  163 (350)
T ss_pred             hhhhhhccCCCCcccccCcc-ceeeecchhhHHHHHHHHHhC--ceEEEeecccccC--CcccCCCccccccccCc----
Confidence            9999999876622  23455 889999999999999999998  8999999999995  67778888887754332    


Q ss_pred             CCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHH-HHHhCCC-cccccCCC-ccceeHHH
Q 020104          162 DSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSL-ALILGNR-EEYGFLLN-TSMVHVDD  238 (331)
Q Consensus       162 ~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~-~~~i~v~D  238 (331)
                      .-|...|...|+.+|.++..|+++.|+.+.|.|+.+.|||+..-.-...+..+. +++.+++ ..++++.+ ++|.|++|
T Consensus       164 igpr~cydegKr~aE~L~~~y~k~~giE~rIaRifNtyGPrm~~~dgrvvsnf~~q~lr~epltv~g~G~qtRSF~yvsD  243 (350)
T KOG1429|consen  164 IGPRSCYDEGKRVAETLCYAYHKQEGIEVRIARIFNTYGPRMHMDDGRVVSNFIAQALRGEPLTVYGDGKQTRSFQYVSD  243 (350)
T ss_pred             CCchhhhhHHHHHHHHHHHHhhcccCcEEEEEeeecccCCccccCCChhhHHHHHHHhcCCCeEEEcCCcceEEEEeHHH
Confidence            345678999999999999999999999999999999999987654445554443 5666776 66777777 89999999


Q ss_pred             HHHHHHHhhcCCCCCceEEEeccccCHHHHHHHHHhhCCCCCCCCccCCcc-ccCCcCcccCcHHH-HHcCCccccChhh
Q 020104          239 VARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAE-IEGYRAPGSSSKKL-LDAGFRYNYGIDE  316 (331)
Q Consensus       239 ~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~-~~lg~~~~~~~~e  316 (331)
                      ++++++.+++.+..+.+...+++.+|+.|+++++.+..+....+.  .... ..++....-|++++ +.|||.|+.+|+|
T Consensus       244 ~Vegll~Lm~s~~~~pvNiGnp~e~Tm~elAemv~~~~~~~s~i~--~~~~~~Ddp~kR~pDit~ake~LgW~Pkv~L~e  321 (350)
T KOG1429|consen  244 LVEGLLRLMESDYRGPVNIGNPGEFTMLELAEMVKELIGPVSEIE--FVENGPDDPRKRKPDITKAKEQLGWEPKVSLRE  321 (350)
T ss_pred             HHHHHHHHhcCCCcCCcccCCccceeHHHHHHHHHHHcCCCccee--ecCCCCCCccccCccHHHHHHHhCCCCCCcHHH
Confidence            999999999998766644456788999999999999886333332  1122 25566788899999 8899999999999


Q ss_pred             hHHHHHHHHHHc
Q 020104          317 MFDEAIQCCKEK  328 (331)
Q Consensus       317 ~i~~~~~~~~~~  328 (331)
                      ++..++.|++++
T Consensus       322 gL~~t~~~fr~~  333 (350)
T KOG1429|consen  322 GLPLTVTYFRER  333 (350)
T ss_pred             hhHHHHHHHHHH
Confidence            999999998764

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=100.00  E-value=6.5e-41  Score=292.36  Aligned_cols=286  Identities=19%  Similarity=0.221  Sum_probs=203.9

Q ss_pred             EEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCc---cH-HHHhc--
Q 020104            8 VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPD---GF-DAAIA--   81 (331)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~---~~-~~~~~--   81 (331)
                      |||||||||||++|+++|+++|++|+++.|+..     .....            ..+..+|+.|..   ++ .+++.  
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~-----~~~~~------------~~~~~~~~~d~~~~~~~~~~~~~~~   64 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLK-----DGTKF------------VNLVDLDIADYMDKEDFLAQIMAGD   64 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCCceEEEecCCC-----cchHH------------HhhhhhhhhhhhhHHHHHHHHhccc
Confidence            899999999999999999999998877777651     11110            012234554433   32 23332  


Q ss_pred             ---CccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhh
Q 020104           82 ---GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYI  158 (331)
Q Consensus        82 ---~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~  158 (331)
                         ++|+|||+|+.......++. ..++.|+.++.+|+++|++.+ + +|||+||.++|+.  ....+.+|+++      
T Consensus        65 ~~~~~d~Vih~A~~~~~~~~~~~-~~~~~n~~~t~~ll~~~~~~~-~-~~i~~SS~~vyg~--~~~~~~~E~~~------  133 (308)
T PRK11150         65 DFGDIEAIFHEGACSSTTEWDGK-YMMDNNYQYSKELLHYCLERE-I-PFLYASSAATYGG--RTDDFIEEREY------  133 (308)
T ss_pred             ccCCccEEEECceecCCcCCChH-HHHHHHHHHHHHHHHHHHHcC-C-cEEEEcchHHhCc--CCCCCCccCCC------
Confidence               68999999985443333444 689999999999999999988 6 7999999999963  22335666553      


Q ss_pred             hhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCC--CCccHHHHH-HHHhCCCcccccC--C-Ccc
Q 020104          159 RKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPK--FAGSVRSSL-ALILGNREEYGFL--L-NTS  232 (331)
Q Consensus       159 ~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~--~-~~~  232 (331)
                         ..|.++|+.+|..+|+.++.++..++++++++||+++|||+....  +......+. ....+....+..+  . .++
T Consensus       134 ---~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~r~  210 (308)
T PRK11150        134 ---EKPLNVYGYSKFLFDEYVRQILPEANSQICGFRYFNVYGPREGHKGSMASVAFHLNNQLNNGENPKLFEGSENFKRD  210 (308)
T ss_pred             ---CCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeeeecCCCCCCCCccchhHHHHHHHHhcCCCCEEecCCCceeee
Confidence               355678999999999999999888899999999999999986542  122222222 2333443322222  2 279


Q ss_pred             ceeHHHHHHHHHHhhcCCCCCceEEE-eccccCHHHHHHHHHhhCCCCCCCCccCCccc---cCCcCcccCcHHHHHcCC
Q 020104          233 MVHVDDVARAHIFLLEYPDAKGRYIC-SSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEI---EGYRAPGSSSKKLLDAGF  308 (331)
Q Consensus       233 ~i~v~D~a~~~~~~~~~~~~~~~~~~-~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~k~~~lg~  308 (331)
                      |+|++|+|++++.+++.. .+++||+ ++..+|+.|+++.+.+..+...+... ..+..   ........|++|++.+||
T Consensus       211 ~i~v~D~a~a~~~~~~~~-~~~~yni~~~~~~s~~el~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~k~~~~g~  288 (308)
T PRK11150        211 FVYVGDVAAVNLWFWENG-VSGIFNCGTGRAESFQAVADAVLAYHKKGEIEYI-PFPDKLKGRYQAFTQADLTKLRAAGY  288 (308)
T ss_pred             eeeHHHHHHHHHHHHhcC-CCCeEEcCCCCceeHHHHHHHHHHHhCCCcceec-cCccccccccceecccCHHHHHhcCC
Confidence            999999999999998765 3579997 46779999999999998873222110 11111   112345689999966899


Q ss_pred             cccc-ChhhhHHHHHHHHH
Q 020104          309 RYNY-GIDEMFDEAIQCCK  326 (331)
Q Consensus       309 ~~~~-~~~e~i~~~~~~~~  326 (331)
                      +|++ +++++|+++++|+.
T Consensus       289 ~p~~~~~~~gl~~~~~~~~  307 (308)
T PRK11150        289 DKPFKTVAEGVAEYMAWLN  307 (308)
T ss_pred             CCCCCCHHHHHHHHHHHhh
Confidence            9875 99999999999975

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=100.00  E-value=2.7e-40  Score=289.88  Aligned_cols=302  Identities=19%  Similarity=0.203  Sum_probs=223.3

Q ss_pred             eEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC--
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG--   82 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--   82 (331)
                      +|||||||||||++++++|++.|  ++|++++|....   ...+.+..+..    .++++++.+|+.|++++.+++++  
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~   73 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYA---GNLENLADLED----NPRYRFVKGDIGDRELVSRLFTEHQ   73 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcc---hhhhhhhhhcc----CCCcEEEEcCCcCHHHHHHHHhhcC
Confidence            59999999999999999999987  789888764310   11111111111    14688999999999999999986  


Q ss_pred             ccEEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhh
Q 020104           83 CTGVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRK  160 (331)
Q Consensus        83 ~d~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~  160 (331)
                      +|+|||+|+....  ...++. ..+++|+.++.+++++|++.+...++|++||.++|+... ...+++|+++        
T Consensus        74 ~d~vi~~a~~~~~~~~~~~~~-~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~-~~~~~~e~~~--------  143 (317)
T TIGR01181        74 PDAVVHFAAESHVDRSISGPA-AFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLE-KGDAFTETTP--------  143 (317)
T ss_pred             CCEEEEcccccCchhhhhCHH-HHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCC-CCCCcCCCCC--------
Confidence            9999999986542  223444 788999999999999999875123899999999986322 2225777764        


Q ss_pred             cCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHH-HHhCCCc-ccccCCC-ccceeHH
Q 020104          161 LDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLA-LILGNRE-EYGFLLN-TSMVHVD  237 (331)
Q Consensus       161 ~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~-~~~i~v~  237 (331)
                       ..|.+.|+.+|..+|.+++.++.+.+++++++||+.+||+.....  ..+..+.. ...+... .++.+.. ++|+|++
T Consensus       144 -~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~  220 (317)
T TIGR01181       144 -LAPSSPYSASKAASDHLVRAYHRTYGLPALITRCSNNYGPYQFPE--KLIPLMITNALAGKPLPVYGDGQQVRDWLYVE  220 (317)
T ss_pred             -CCCCCchHHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCcc--cHHHHHHHHHhcCCCceEeCCCceEEeeEEHH
Confidence             245678999999999999999888899999999999999975432  23333332 2333332 3344433 7999999


Q ss_pred             HHHHHHHHhhcCCCCCceEEE-eccccCHHHHHHHHHhhCCCCCCCCccCCc-cccCCcCcccCcHHH-HHcCCccccCh
Q 020104          238 DVARAHIFLLEYPDAKGRYIC-SSHTLTIQEMAEFLSAKYPEYPIPTVDSLA-EIEGYRAPGSSSKKL-LDAGFRYNYGI  314 (331)
Q Consensus       238 D~a~~~~~~~~~~~~~~~~~~-~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~-~~lg~~~~~~~  314 (331)
                      |+++++..++++...+++||+ +++.+|++|+++.+.+.+|...... .... ..........|++|+ +.|||+|++++
T Consensus       221 D~a~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~~lG~~p~~~~  299 (317)
T TIGR01181       221 DHCRAIYLVLEKGRVGETYNIGGGNERTNLEVVETILELLGKDEDLI-THVEDRPGHDRRYAIDASKIKRELGWAPKYTF  299 (317)
T ss_pred             HHHHHHHHHHcCCCCCceEEeCCCCceeHHHHHHHHHHHhCCCcccc-cccCCCccchhhhcCCHHHHHHHhCCCCCCcH
Confidence            999999999987766789997 4578999999999999988321110 0111 111223346899999 88999999999


Q ss_pred             hhhHHHHHHHHHHcC
Q 020104          315 DEMFDEAIQCCKEKG  329 (331)
Q Consensus       315 ~e~i~~~~~~~~~~~  329 (331)
                      +++++++++||++++
T Consensus       300 ~~~i~~~~~~~~~~~  314 (317)
T TIGR01181       300 EEGLRKTVQWYLDNE  314 (317)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999998764

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.1e-39  Score=285.68  Aligned_cols=296  Identities=27%  Similarity=0.298  Sum_probs=229.2

Q ss_pred             eEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc-cE
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC-TG   85 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-d~   85 (331)
                      +|||||||||||++|+++|++.||+|++++|...     ......         .++.++.+|+.|.+.+.++..++ |+
T Consensus         2 ~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~-----~~~~~~---------~~~~~~~~d~~~~~~~~~~~~~~~d~   67 (314)
T COG0451           2 RILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRD-----GLDPLL---------SGVEFVVLDLTDRDLVDELAKGVPDA   67 (314)
T ss_pred             eEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCc-----cccccc---------cccceeeecccchHHHHHHHhcCCCE
Confidence            5999999999999999999999999999999872     111110         35788999999988888888877 99


Q ss_pred             EEEecccCCCCCC---ChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCC-CCCChhhhhhc
Q 020104           86 VLHVATPVDFEDK---EPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDET-FWSDVDYIRKL  161 (331)
Q Consensus        86 Vih~a~~~~~~~~---~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~-~~~~~~~~~~~  161 (331)
                      |||+|+.......   ++. ..++.|+.++.+++++|++.+ +++|||.||.++++.. ....+++|+ .+         
T Consensus        68 vih~aa~~~~~~~~~~~~~-~~~~~nv~gt~~ll~aa~~~~-~~~~v~~ss~~~~~~~-~~~~~~~E~~~~---------  135 (314)
T COG0451          68 VIHLAAQSSVPDSNASDPA-EFLDVNVDGTLNLLEAARAAG-VKRFVFASSVSVVYGD-PPPLPIDEDLGP---------  135 (314)
T ss_pred             EEEccccCchhhhhhhCHH-HHHHHHHHHHHHHHHHHHHcC-CCeEEEeCCCceECCC-CCCCCcccccCC---------
Confidence            9999997663322   233 689999999999999999977 9999998888877643 334477777 32         


Q ss_pred             CCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHH-H-HHHHHhCCC-cccc-cCCC-ccceeH
Q 020104          162 DSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVR-S-SLALILGNR-EEYG-FLLN-TSMVHV  236 (331)
Q Consensus       162 ~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~-~-~~~~~~~~~-~~~~-~~~~-~~~i~v  236 (331)
                      ..|.++|+.+|..+|+.+..+...++++++++||+.+|||+........+. . +.....+.+ .... .+.. ++++|+
T Consensus       136 ~~p~~~Yg~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v  215 (314)
T COG0451         136 PRPLNPYGVSKLAAEQLLRAYARLYGLPVVILRPFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYV  215 (314)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCCCCCcCcHHHHHHHHHhCCCcceEeCCCceeEeeEeH
Confidence            345558999999999999999987899999999999999998775433222 2 223444554 3333 2233 689999


Q ss_pred             HHHHHHHHHhhcCCCCCceEEEecc--ccCHHHHHHHHHhhCCCCCCC--CccCCccccCCcCcccCcHHH-HHcCCccc
Q 020104          237 DDVARAHIFLLEYPDAKGRYICSSH--TLTIQEMAEFLSAKYPEYPIP--TVDSLAEIEGYRAPGSSSKKL-LDAGFRYN  311 (331)
Q Consensus       237 ~D~a~~~~~~~~~~~~~~~~~~~~~--~~s~~e~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~k~-~~lg~~~~  311 (331)
                      +|++++++.+++++..+ .||++++  .+|++|+++.+.+..+.....  ...............+|++|+ +.|||.|+
T Consensus       216 ~D~a~~~~~~~~~~~~~-~~ni~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~  294 (314)
T COG0451         216 DDVADALLLALENPDGG-VFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGRRGDLREGKLLDISKARAALGWEPK  294 (314)
T ss_pred             HHHHHHHHHHHhCCCCc-EEEeCCCCCcEEHHHHHHHHHHHhCCCCcceeecCCCCCCcccccccCCHHHHHHHhCCCCC
Confidence            99999999999988777 9997653  799999999999988833221  100111224445778999999 89999999


Q ss_pred             cChhhhHHHHHHHHHHcC
Q 020104          312 YGIDEMFDEAIQCCKEKG  329 (331)
Q Consensus       312 ~~~~e~i~~~~~~~~~~~  329 (331)
                      +++++++.++++|+....
T Consensus       295 ~~~~~~i~~~~~~~~~~~  312 (314)
T COG0451         295 VSLEEGLADTLEWLLKKL  312 (314)
T ss_pred             CCHHHHHHHHHHHHHHhh
Confidence            999999999999997764

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=100.00  E-value=1.7e-40  Score=289.75  Aligned_cols=282  Identities=19%  Similarity=0.210  Sum_probs=212.3

Q ss_pred             EEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--CccEE
Q 020104            9 CVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--GCTGV   86 (331)
Q Consensus         9 lVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~V   86 (331)
                      ||||||||||++|+++|++.|++|+++.+..                           .+|+.|.+++.++++  ++|+|
T Consensus         1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~~---------------------------~~Dl~~~~~l~~~~~~~~~d~V   53 (306)
T PLN02725          1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTHK---------------------------ELDLTRQADVEAFFAKEKPTYV   53 (306)
T ss_pred             CcccCCCcccHHHHHHHHhCCCcEEEeeccc---------------------------cCCCCCHHHHHHHHhccCCCEE
Confidence            6999999999999999999999887653322                           379999999999886  58999


Q ss_pred             EEecccCCC---CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCC
Q 020104           87 LHVATPVDF---EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDS  163 (331)
Q Consensus        87 ih~a~~~~~---~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~  163 (331)
                      ||||+....   ...++. +.++.|+.++.+|+++|++.+ +++|||+||..+|+  +....+++|+++..     .+..
T Consensus        54 ih~A~~~~~~~~~~~~~~-~~~~~n~~~~~~ll~~~~~~~-~~~~i~~SS~~vyg--~~~~~~~~E~~~~~-----~~~~  124 (306)
T PLN02725         54 ILAAAKVGGIHANMTYPA-DFIRENLQIQTNVIDAAYRHG-VKKLLFLGSSCIYP--KFAPQPIPETALLT-----GPPE  124 (306)
T ss_pred             EEeeeeecccchhhhCcH-HHHHHHhHHHHHHHHHHHHcC-CCeEEEeCceeecC--CCCCCCCCHHHhcc-----CCCC
Confidence            999987542   223454 789999999999999999998 89999999999986  33456788876421     1122


Q ss_pred             CCc-hhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCC--CCccHH----HHHHH-HhCCCcc--cccCCC-cc
Q 020104          164 WGK-SYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPK--FAGSVR----SSLAL-ILGNREE--YGFLLN-TS  232 (331)
Q Consensus       164 ~~~-~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~--~~~~~~----~~~~~-~~~~~~~--~~~~~~-~~  232 (331)
                      |.+ .|+.+|.++|++++.+.+.++++++++||+.+|||+....  ....+.    .+... ..+.+..  ++.+.. ++
T Consensus       125 p~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~  204 (306)
T PLN02725        125 PTNEWYAIAKIAGIKMCQAYRIQYGWDAISGMPTNLYGPHDNFHPENSHVIPALIRRFHEAKANGAPEVVVWGSGSPLRE  204 (306)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCCCCCcccHHHHHHHHHHhhcCCCeEEEcCCCCeeec
Confidence            333 5999999999999999888899999999999999975321  111122    22222 2333333  333444 79


Q ss_pred             ceeHHHHHHHHHHhhcCCCCCceEEEe-ccccCHHHHHHHHHhhCCC-CCCCCccCCccccCCcCcccCcHHHHHcCCcc
Q 020104          233 MVHVDDVARAHIFLLEYPDAKGRYICS-SHTLTIQEMAEFLSAKYPE-YPIPTVDSLAEIEGYRAPGSSSKKLLDAGFRY  310 (331)
Q Consensus       233 ~i~v~D~a~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~k~~~lg~~~  310 (331)
                      |+|++|++++++.+++.....+.||++ +..+|+.|+++.+.+.++. ..+..  ............+|++|++.+||+|
T Consensus       205 ~i~v~Dv~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~d~~k~~~lg~~p  282 (306)
T PLN02725        205 FLHVDDLADAVVFLMRRYSGAEHVNVGSGDEVTIKELAELVKEVVGFEGELVW--DTSKPDGTPRKLMDSSKLRSLGWDP  282 (306)
T ss_pred             cccHHHHHHHHHHHHhccccCcceEeCCCCcccHHHHHHHHHHHhCCCCceee--cCCCCCcccccccCHHHHHHhCCCC
Confidence            999999999999999876556778875 5789999999999998872 11111  1111122335568999997799999


Q ss_pred             ccChhhhHHHHHHHHHHc
Q 020104          311 NYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       311 ~~~~~e~i~~~~~~~~~~  328 (331)
                      +++++++|+++++|++++
T Consensus       283 ~~~~~~~l~~~~~~~~~~  300 (306)
T PLN02725        283 KFSLKDGLQETYKWYLEN  300 (306)
T ss_pred             CCCHHHHHHHHHHHHHhh
Confidence            999999999999999875

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=100.00  E-value=7.1e-40  Score=289.61  Aligned_cols=304  Identities=18%  Similarity=0.202  Sum_probs=221.2

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--Cc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--GC   83 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~   83 (331)
                      |+|||||||||||++++++|+++|++|++++|...    ........+....  ..+++++.+|+.|.+++.+++.  ++
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~~~   74 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCN----SKRSVLPVIERLG--GKHPTFVEGDIRNEALLTEILHDHAI   74 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHHCCCeEEEEecCCC----chHhHHHHHHHhc--CCCceEEEccCCCHHHHHHHHhcCCC
Confidence            48999999999999999999999999999877541    1111111111111  1356788999999999988886  69


Q ss_pred             cEEEEecccCCCC--CCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhc
Q 020104           84 TGVLHVATPVDFE--DKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKL  161 (331)
Q Consensus        84 d~Vih~a~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~  161 (331)
                      |+|||+|+.....  ..++. +.+++|+.++.+++++|++.+ +++||++||..+|+  .....+++|+++.        
T Consensus        75 d~vvh~a~~~~~~~~~~~~~-~~~~~n~~~~~~l~~~~~~~~-~~~~v~~Ss~~~yg--~~~~~~~~E~~~~--------  142 (338)
T PRK10675         75 DTVIHFAGLKAVGESVQKPL-EYYDNNVNGTLRLISAMRAAN-VKNLIFSSSATVYG--DQPKIPYVESFPT--------  142 (338)
T ss_pred             CEEEECCccccccchhhCHH-HHHHHHHHHHHHHHHHHHHcC-CCEEEEeccHHhhC--CCCCCccccccCC--------
Confidence            9999999865421  22344 789999999999999999998 89999999999885  3344567888742        


Q ss_pred             CCCCchhHhhHHHHHHHHHHHHHHc-CCcEEEeccCceeCCCCCCCC-------Cc-cHHHHHHHHhCCCcc---cc---
Q 020104          162 DSWGKSYAISKTLTERAALEFAEEH-GLDLVTLIPSMVVGPFICPKF-------AG-SVRSSLALILGNREE---YG---  226 (331)
Q Consensus       162 ~~~~~~Y~~~K~~~e~~~~~~~~~~-~~~~~ilRp~~v~G~~~~~~~-------~~-~~~~~~~~~~~~~~~---~~---  226 (331)
                      ..|.+.|+.+|..+|++++.+++.. +++++++|++++||+.....+       .. .+..+.....+....   ++   
T Consensus       143 ~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (338)
T PRK10675        143 GTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDY  222 (338)
T ss_pred             CCCCChhHHHHHHHHHHHHHHHHhcCCCcEEEEEeeeecCCCcccccccCCCCChhHHHHHHHHHHhcCCCceEEeCCcC
Confidence            2456789999999999999987654 799999999999997532111       11 122223333332211   11   


Q ss_pred             ---cCCC-ccceeHHHHHHHHHHhhcCC--CC-CceEEEe-ccccCHHHHHHHHHhhCCCCCCCCccCCccccCCcCccc
Q 020104          227 ---FLLN-TSMVHVDDVARAHIFLLEYP--DA-KGRYICS-SHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGS  298 (331)
Q Consensus       227 ---~~~~-~~~i~v~D~a~~~~~~~~~~--~~-~~~~~~~-~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (331)
                         .+.+ ++|+|++|+|++++.+++..  .. +++||++ ++.+|++|+++.+.+..|.. .+................
T Consensus       223 ~~~~g~~~~~~v~v~D~a~~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~  301 (338)
T PRK10675        223 PTEDGTGVRDYIHVMDLADGHVAAMEKLANKPGVHIYNLGAGVGSSVLDVVNAFSKACGKP-VNYHFAPRREGDLPAYWA  301 (338)
T ss_pred             CCCCCcEEEeeEEHHHHHHHHHHHHHhhhccCCCceEEecCCCceeHHHHHHHHHHHhCCC-CCeeeCCCCCCchhhhhc
Confidence               2223 79999999999999998752  22 4689975 67899999999999988732 221001111122345678


Q ss_pred             CcHHH-HHcCCccccChhhhHHHHHHHHHHc
Q 020104          299 SSKKL-LDAGFRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       299 ~~~k~-~~lg~~~~~~~~e~i~~~~~~~~~~  328 (331)
                      |++|+ +.+||+|+++++++|+++++|++++
T Consensus       302 ~~~k~~~~lg~~p~~~~~~~~~~~~~~~~~~  332 (338)
T PRK10675        302 DASKADRELNWRVTRTLDEMAQDTWHWQSRH  332 (338)
T ss_pred             CHHHHHHHhCCCCcCcHHHHHHHHHHHHHhh
Confidence            99999 8899999999999999999999764

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=100.00  E-value=6.5e-40  Score=283.95  Aligned_cols=273  Identities=16%  Similarity=0.083  Sum_probs=204.1

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--Cc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--GC   83 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~   83 (331)
                      |+||||||+||||++|+++|+++| +|++++|..                        ..+.+|+.|.+.+.++++  ++
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~------------------------~~~~~Dl~d~~~~~~~~~~~~~   55 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHS------------------------TDYCGDFSNPEGVAETVRKIRP   55 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhccC-CEEEecccc------------------------ccccCCCCCHHHHHHHHHhcCC
Confidence            489999999999999999999999 798888765                        124689999999999887  58


Q ss_pred             cEEEEecccCCCC--CCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhc
Q 020104           84 TGVLHVATPVDFE--DKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKL  161 (331)
Q Consensus        84 d~Vih~a~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~  161 (331)
                      |+|||||+.....  ..++. ..+++|+.++.+++++|++.+ + +|||+||..||+  .....|++|+++         
T Consensus        56 D~Vih~Aa~~~~~~~~~~~~-~~~~~N~~~~~~l~~aa~~~g-~-~~v~~Ss~~Vy~--~~~~~p~~E~~~---------  121 (299)
T PRK09987         56 DVIVNAAAHTAVDKAESEPE-FAQLLNATSVEAIAKAANEVG-A-WVVHYSTDYVFP--GTGDIPWQETDA---------  121 (299)
T ss_pred             CEEEECCccCCcchhhcCHH-HHHHHHHHHHHHHHHHHHHcC-C-eEEEEccceEEC--CCCCCCcCCCCC---------
Confidence            9999999976532  23444 778899999999999999998 5 899999999995  333457888874         


Q ss_pred             CCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHh-CCCc-cccc--CCC-ccceeH
Q 020104          162 DSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALIL-GNRE-EYGF--LLN-TSMVHV  236 (331)
Q Consensus       162 ~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~-~~~~-~~~~--~~~-~~~i~v  236 (331)
                      ..|.++|+.+|+.+|++++.+.    .+++++||+++|||+..    ..+..++..+. +.+. .+++  +.. +.+.++
T Consensus       122 ~~P~~~Yg~sK~~~E~~~~~~~----~~~~ilR~~~vyGp~~~----~~~~~~~~~~~~~~~~~v~~d~~g~~~~~~~~~  193 (299)
T PRK09987        122 TAPLNVYGETKLAGEKALQEHC----AKHLIFRTSWVYAGKGN----NFAKTMLRLAKEREELSVINDQFGAPTGAELLA  193 (299)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhC----CCEEEEecceecCCCCC----CHHHHHHHHHhcCCCeEEeCCCcCCCCCHHHHH
Confidence            3577899999999999998753    46799999999999743    22333443333 3332 2332  222 355677


Q ss_pred             HHHHHHHHHhhcCCCCCceEEEe-ccccCHHHHHHHHHhhCCC--CCCC-----C--ccCCcc-ccCCcCcccCcHHH-H
Q 020104          237 DDVARAHIFLLEYPDAKGRYICS-SHTLTIQEMAEFLSAKYPE--YPIP-----T--VDSLAE-IEGYRAPGSSSKKL-L  304 (331)
Q Consensus       237 ~D~a~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~i~~~~~~--~~~~-----~--~~~~~~-~~~~~~~~~~~~k~-~  304 (331)
                      +|+++++..++..+...++||++ ++.+|+.|+++.+.+..+.  ...+     .  ...++. ...+....+|++|+ +
T Consensus       194 d~~~~~~~~~~~~~~~~giyni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~i~~~~~~~~~~~~~rp~~~~ld~~k~~~  273 (299)
T PRK09987        194 DCTAHAIRVALNKPEVAGLYHLVASGTTTWHDYAALVFEEARKAGITLALNKLNAVPTSAYPTPARRPHNSRLNTEKFQQ  273 (299)
T ss_pred             HHHHHHHHHhhccCCCCCeEEeeCCCCccHHHHHHHHHHHHHhcCCCcCcCeeeecchhhcCCCCCCCCcccCCHHHHHH
Confidence            88888888877665556799975 5789999999999774321  1110     1  001111 13456678999999 7


Q ss_pred             HcCCccccChhhhHHHHHHHHH
Q 020104          305 DAGFRYNYGIDEMFDEAIQCCK  326 (331)
Q Consensus       305 ~lg~~~~~~~~e~i~~~~~~~~  326 (331)
                      .+||+|+ +|+|+|+++++.+.
T Consensus       274 ~lg~~~~-~~~~~l~~~~~~~~  294 (299)
T PRK09987        274 NFALVLP-DWQVGVKRMLTELF  294 (299)
T ss_pred             HhCCCCc-cHHHHHHHHHHHHh
Confidence            7999997 99999999998664

>PLN02583 cinnamoyl-CoA reductase

Probab=100.00  E-value=1.7e-38  Score=274.95  Aligned_cols=288  Identities=25%  Similarity=0.436  Sum_probs=212.9

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      +.+++|||||||||||++++++|+++||+|++++|+.     ........+..+.....+++++.+|+.|.+++.+++.+
T Consensus         4 ~~~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~-----~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~~   78 (297)
T PLN02583          4 ESSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKN-----GETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDALKG   78 (297)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCc-----hhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHHHcC
Confidence            4567899999999999999999999999999999964     11111111112211124688999999999999999999


Q ss_pred             ccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCC---CCCCcccCCCCCChhhhh
Q 020104           83 CTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYND---KDVDMMDETFWSDVDYIR  159 (331)
Q Consensus        83 ~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~---~~~~~~~E~~~~~~~~~~  159 (331)
                      +|.|+|+++.......++. ..+++|+.++.+++++|.+...++|+|++||..++++..   ....+++|++|.......
T Consensus        79 ~d~v~~~~~~~~~~~~~~~-~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~~~~~~E~~~~~~~~~~  157 (297)
T PLN02583         79 CSGLFCCFDPPSDYPSYDE-KMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNFCR  157 (297)
T ss_pred             CCEEEEeCccCCcccccHH-HHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCCCCCCCcccCCCHHHHh
Confidence            9999998865442222343 889999999999999999863278999999988764331   223467888775433322


Q ss_pred             hcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHHHH
Q 020104          160 KLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDV  239 (331)
Q Consensus       160 ~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~  239 (331)
                         .+...|+.+|..+|++++.++++.+++++++||+.||||+......        .+.+....++ .+.++|+|++|+
T Consensus       158 ---~~~~~Y~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~~~~~~~--------~~~~~~~~~~-~~~~~~v~V~Dv  225 (297)
T PLN02583        158 ---KFKLWHALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPSLTQHNP--------YLKGAAQMYE-NGVLVTVDVNFL  225 (297)
T ss_pred             ---hcccHHHHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCCCCCchh--------hhcCCcccCc-ccCcceEEHHHH
Confidence               1223699999999999999988789999999999999997643211        1122212222 233689999999


Q ss_pred             HHHHHHhhcCCCCCceEEEeccccC-HHHHHHHHHhhCCCCCCCCccCCccc-cCCcCcccCcHHHHHcCCcc
Q 020104          240 ARAHIFLLEYPDAKGRYICSSHTLT-IQEMAEFLSAKYPEYPIPTVDSLAEI-EGYRAPGSSSKKLLDAGFRY  310 (331)
Q Consensus       240 a~~~~~~~~~~~~~~~~~~~~~~~s-~~e~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~~~lg~~~  310 (331)
                      |++++.+++.+..++.|++.++.++ +.++++++.+.+|..+++.  ..... .......++++|++.||+++
T Consensus       226 a~a~~~al~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~~~~~~~~~~~k~~~l~~~~  296 (297)
T PLN02583        226 VDAHIRAFEDVSSYGRYLCFNHIVNTEEDAVKLAQMLSPLIPSPP--PYEMQGSEVYQQRIRNKKLNKLMEDF  296 (297)
T ss_pred             HHHHHHHhcCcccCCcEEEecCCCccHHHHHHHHHHhCCCCCCCC--cccccCCCccccccChHHHHHhCccc
Confidence            9999999998888889998877655 6789999999999776664  22111 22345678999999999875

>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=2.1e-39  Score=266.82  Aligned_cols=307  Identities=19%  Similarity=0.223  Sum_probs=240.9

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--C
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--G   82 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~   82 (331)
                      .++||||||+||||+|.+-+|+++||+|.+++.=..    .....++..+++....+++.++.+|+.|.+.++++++  +
T Consensus         2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n----~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~   77 (343)
T KOG1371|consen    2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNN----SYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVK   77 (343)
T ss_pred             CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccc----cchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcC
Confidence            468999999999999999999999999999875332    3344555555554446789999999999999999996  6


Q ss_pred             ccEEEEecccCC--CCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhh
Q 020104           83 CTGVLHVATPVD--FEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRK  160 (331)
Q Consensus        83 ~d~Vih~a~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~  160 (331)
                      +|.|+|+|+...  .+..+|. .++.+|+.++.+|++.+++++ ++.+||.||+.|||  .+...|++|+++.       
T Consensus        78 fd~V~Hfa~~~~vgeS~~~p~-~Y~~nNi~gtlnlLe~~~~~~-~~~~V~sssatvYG--~p~~ip~te~~~t-------  146 (343)
T KOG1371|consen   78 FDAVMHFAALAAVGESMENPL-SYYHNNIAGTLNLLEVMKAHN-VKALVFSSSATVYG--LPTKVPITEEDPT-------  146 (343)
T ss_pred             CceEEeehhhhccchhhhCch-hheehhhhhHHHHHHHHHHcC-CceEEEecceeeec--CcceeeccCcCCC-------
Confidence            999999998544  5566787 899999999999999999999 99999999999995  6667999999963       


Q ss_pred             cCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeC--CCCCCC-----CCccHH-HHHHH---------HhCCCc
Q 020104          161 LDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVG--PFICPK-----FAGSVR-SSLAL---------ILGNRE  223 (331)
Q Consensus       161 ~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G--~~~~~~-----~~~~~~-~~~~~---------~~~~~~  223 (331)
                       ..|.++||.+|...|.++..+...+++.++.||.++++|  |.....     .+..+. ...+.         ..+.+.
T Consensus       147 -~~p~~pyg~tK~~iE~i~~d~~~~~~~~~~~LRyfn~~ga~p~Gr~ge~p~~~~nnl~p~v~~vaigr~~~l~v~g~d~  225 (343)
T KOG1371|consen  147 -DQPTNPYGKTKKAIEEIIHDYNKAYGWKVTGLRYFNVIGAHPSGRIGEAPLGIPNNLLPYVFQVAIGRRPNLQVVGRDY  225 (343)
T ss_pred             -CCCCCcchhhhHHHHHHHHhhhccccceEEEEEeccccCccccCccCCCCccCcccccccccchhhcccccceeecCcc
Confidence             246889999999999999999988899999999999999  322111     111111 11111         122222


Q ss_pred             ccccCCC-ccceeHHHHHHHHHHhhcCCCC---CceEEE-eccccCHHHHHHHHHhhCC-CCCCCCccCCccccCCcCcc
Q 020104          224 EYGFLLN-TSMVHVDDVARAHIFLLEYPDA---KGRYIC-SSHTLTIQEMAEFLSAKYP-EYPIPTVDSLAEIEGYRAPG  297 (331)
Q Consensus       224 ~~~~~~~-~~~i~v~D~a~~~~~~~~~~~~---~~~~~~-~~~~~s~~e~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~  297 (331)
                      ...++.. ++++|+-|.|+..+.++.+...   -++||. ++...++.+++..+.+..| ..+.+.  ...+..+.....
T Consensus       226 ~t~dgt~vrdyi~v~Dla~~h~~al~k~~~~~~~~i~Nlgtg~g~~V~~lv~a~~k~~g~~~k~~~--v~~R~gdv~~~y  303 (343)
T KOG1371|consen  226 TTIDGTIVRDYIHVLDLADGHVAALGKLRGAAEFGVYNLGTGKGSSVLELVTAFEKALGVKIKKKV--VPRRNGDVAFVY  303 (343)
T ss_pred             cccCCCeeecceeeEehHHHHHHHhhccccchheeeEeecCCCCccHHHHHHHHHHHhcCCCCccc--cCCCCCCceeee
Confidence            2222222 7999999999999999987543   348885 6778999999999999998 333333  222445566778


Q ss_pred             cCcHHH-HHcCCccccChhhhHHHHHHHHHHcC
Q 020104          298 SSSKKL-LDAGFRYNYGIDEMFDEAIQCCKEKG  329 (331)
Q Consensus       298 ~~~~k~-~~lg~~~~~~~~e~i~~~~~~~~~~~  329 (331)
                      .+.+++ ++|||+|.++++++++++++|+.++.
T Consensus       304 a~~~~a~~elgwk~~~~iee~c~dlw~W~~~np  336 (343)
T KOG1371|consen  304 ANPSKAQRELGWKAKYGLQEMLKDLWRWQKQNP  336 (343)
T ss_pred             eChHHHHHHhCCccccCHHHHHHHHHHHHhcCC
Confidence            899999 99999999999999999999998763

>PLN02686 cinnamoyl-CoA reductase

Probab=100.00  E-value=2e-38  Score=281.70  Aligned_cols=297  Identities=26%  Similarity=0.380  Sum_probs=214.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCC---CCCcEEEEeCCCCCCccHHHHh
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPG---ASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      ++|+||||||+||||++++++|+++|++|+++.|+.     +....+..+.....   ...++.++.+|+.|.+++.+++
T Consensus        52 ~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~-----~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i  126 (367)
T PLN02686         52 EARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQ-----EDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAF  126 (367)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHH
Confidence            467899999999999999999999999999988876     22222222111100   0135788999999999999999


Q ss_pred             cCccEEEEecccCCCCC-CChhhHHHHHHHHHHHHHHHHHHhc-CCccEEEEecccc--eeecCCCC--CCcccCCCCCC
Q 020104           81 AGCTGVLHVATPVDFED-KEPEEVITQRAINGTLGILKSCLKS-GTVKRVVYTSSNA--AVFYNDKD--VDMMDETFWSD  154 (331)
Q Consensus        81 ~~~d~Vih~a~~~~~~~-~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~--~~~~~~~~--~~~~~E~~~~~  154 (331)
                      +++|+|||+|+..+... ........+.|+.++.+++++|++. + ++||||+||..  +|+.....  ...++|+++..
T Consensus       127 ~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~-v~r~V~~SS~~~~vyg~~~~~~~~~~i~E~~~~~  205 (367)
T PLN02686        127 DGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTES-VRKCVFTSSLLACVWRQNYPHDLPPVIDEESWSD  205 (367)
T ss_pred             HhccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCC-ccEEEEeccHHHhcccccCCCCCCcccCCCCCCC
Confidence            99999999998764321 1111256788999999999999986 6 89999999964  55421111  13467776543


Q ss_pred             hhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccce
Q 020104          155 VDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMV  234 (331)
Q Consensus       155 ~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  234 (331)
                      .+.   +..|.++|+.+|..+|++++.++++++++++++||+++|||+.....+..   ....+.+....++. +.++|+
T Consensus       206 ~~~---~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~~~~~~~~~---~~~~~~g~~~~~g~-g~~~~v  278 (367)
T PLN02686        206 ESF---CRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPGFFRRNSTA---TIAYLKGAQEMLAD-GLLATA  278 (367)
T ss_pred             hhh---cccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCCCCCCCChh---HHHHhcCCCccCCC-CCcCeE
Confidence            221   23456789999999999999998888999999999999999864322222   22333443233332 235899


Q ss_pred             eHHHHHHHHHHhhcCC---CCCceEEEeccccCHHHHHHHHHhhCCC-CCCCCccCCcc-ccCCcCcccCcHHH-HHcCC
Q 020104          235 HVDDVARAHIFLLEYP---DAKGRYICSSHTLTIQEMAEFLSAKYPE-YPIPTVDSLAE-IEGYRAPGSSSKKL-LDAGF  308 (331)
Q Consensus       235 ~v~D~a~~~~~~~~~~---~~~~~~~~~~~~~s~~e~~~~i~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~k~-~~lg~  308 (331)
                      ||+|+|++++.+++..   ..+++|+++++.+|++|+++.+.+.++. .....  ...+ .........|++|+ +.|||
T Consensus       279 ~V~Dva~A~~~al~~~~~~~~~~~yi~~g~~~s~~e~~~~i~~~~g~~~~~~~--~~~~~~~d~~~~~~d~~kl~~~l~~  356 (367)
T PLN02686        279 DVERLAEAHVCVYEAMGNKTAFGRYICFDHVVSREDEAEELARQIGLPINKIA--GNSSSDDTPARFELSNKKLSRLMSR  356 (367)
T ss_pred             EHHHHHHHHHHHHhccCCCCCCCcEEEeCCCccHHHHHHHHHHHcCCCCCcCC--CchhhcCCcccccccHHHHHHHHHH
Confidence            9999999999999752   3456887788999999999999999872 22111  1112 24456788899999 89999


Q ss_pred             ccccChh
Q 020104          309 RYNYGID  315 (331)
Q Consensus       309 ~~~~~~~  315 (331)
                      +|+...+
T Consensus       357 ~~~~~~~  363 (367)
T PLN02686        357 TRRCCYD  363 (367)
T ss_pred             hhhcccc
Confidence            9985444

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=100.00  E-value=5.3e-38  Score=274.94  Aligned_cols=289  Identities=19%  Similarity=0.176  Sum_probs=211.1

Q ss_pred             EEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc----C
Q 020104            8 VCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA----G   82 (331)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~   82 (331)
                      |||||||||||+++++.|.+.|+ +|.+++|..     .. ..+.   ++     ....+.+|+.+.+.++.+.+    +
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~-----~~-~~~~---~~-----~~~~~~~d~~~~~~~~~~~~~~~~~   66 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLR-----DG-HKFL---NL-----ADLVIADYIDKEDFLDRLEKGAFGK   66 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCCceEEEEecCC-----Cc-hhhh---hh-----hheeeeccCcchhHHHHHHhhccCC
Confidence            69999999999999999999997 788887755     11 1111   11     11346678888777776654    7


Q ss_pred             ccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcC
Q 020104           83 CTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLD  162 (331)
Q Consensus        83 ~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~  162 (331)
                      +|+|||+|+.......++. ..+++|+.++.+++++|++.+ + +|||+||.++|+..   ..+++|+++        +.
T Consensus        67 ~D~vvh~A~~~~~~~~~~~-~~~~~n~~~~~~ll~~~~~~~-~-~~v~~SS~~vy~~~---~~~~~e~~~--------~~  132 (314)
T TIGR02197        67 IEAIFHQGACSDTTETDGE-YMMENNYQYSKRLLDWCAEKG-I-PFIYASSAATYGDG---EAGFREGRE--------LE  132 (314)
T ss_pred             CCEEEECccccCccccchH-HHHHHHHHHHHHHHHHHHHhC-C-cEEEEccHHhcCCC---CCCcccccC--------cC
Confidence            9999999997655555565 788999999999999999988 5 89999999998532   234566653        12


Q ss_pred             CCCchhHhhHHHHHHHHHHHHH--HcCCcEEEeccCceeCCCCCCC--CCccHHHHH-HHHhCCCccc-------ccCCC
Q 020104          163 SWGKSYAISKTLTERAALEFAE--EHGLDLVTLIPSMVVGPFICPK--FAGSVRSSL-ALILGNREEY-------GFLLN  230 (331)
Q Consensus       163 ~~~~~Y~~~K~~~e~~~~~~~~--~~~~~~~ilRp~~v~G~~~~~~--~~~~~~~~~-~~~~~~~~~~-------~~~~~  230 (331)
                      .|.+.|+.+|..+|.+++.+..  ..+++++++||+.+||++....  ....+..+. ....+....+       +.+..
T Consensus       133 ~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  212 (314)
T TIGR02197       133 RPLNVYGYSKFLFDQYVRRRVLPEALSAQVVGLRYFNVYGPREYHKGKMASVAFHLFNQIKAGGNVKLFKSSEGFKDGEQ  212 (314)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhHhhccCCceEEEEEeeccCCCCCCCCCcccHHHHHHHHHhcCCCeEEecCccccCCCCc
Confidence            3577899999999999987543  2367999999999999986432  222233333 2333333222       23333


Q ss_pred             -ccceeHHHHHHHHHHhhcCCCCCceEEEe-ccccCHHHHHHHHHhhCCCCC-CCCccCCccc---cCCcCcccCcHHH-
Q 020104          231 -TSMVHVDDVARAHIFLLEYPDAKGRYICS-SHTLTIQEMAEFLSAKYPEYP-IPTVDSLAEI---EGYRAPGSSSKKL-  303 (331)
Q Consensus       231 -~~~i~v~D~a~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~i~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~k~-  303 (331)
                       ++|+|++|+++++..++.+ ..+++||++ ++++|++|+++.+.+.+|... +... ..+..   .......+|++|+ 
T Consensus       213 ~~~~i~v~D~a~~i~~~~~~-~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~  290 (314)
T TIGR02197       213 LRDFVYVKDVVDVNLWLLEN-GVSGIFNLGTGRARSFNDLADAVFKALGKDEKIEYI-PMPEALRGKYQYFTQADITKLR  290 (314)
T ss_pred             eeeeEEHHHHHHHHHHHHhc-ccCceEEcCCCCCccHHHHHHHHHHHhCCCCcceec-cCccccccccccccccchHHHH
Confidence             7999999999999999988 567799974 578999999999999887321 1110 11111   1123456899999 


Q ss_pred             HHcCCccccChhhhHHHHHHHHH
Q 020104          304 LDAGFRYNYGIDEMFDEAIQCCK  326 (331)
Q Consensus       304 ~~lg~~~~~~~~e~i~~~~~~~~  326 (331)
                      +.+||.|+++++|+++++++|++
T Consensus       291 ~~l~~~p~~~l~~~l~~~~~~~~  313 (314)
T TIGR02197       291 AAGYYGPFTTLEEGVKDYVQWLL  313 (314)
T ss_pred             HhcCCCCcccHHHHHHHHHHHHh
Confidence            88899999999999999999985

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=100.00  E-value=2.6e-38  Score=269.43  Aligned_cols=248  Identities=31%  Similarity=0.346  Sum_probs=186.5

Q ss_pred             EEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCccEE
Q 020104            9 CVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTGV   86 (331)
Q Consensus         9 lVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V   86 (331)
                      |||||+||||++|+++|+++|  ++|++++|...     . .....+...    ...+++++|++|++++.++++++|+|
T Consensus         1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~-----~-~~~~~~~~~----~~~~~~~~Di~d~~~l~~a~~g~d~V   70 (280)
T PF01073_consen    1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPP-----P-KFLKDLQKS----GVKEYIQGDITDPESLEEALEGVDVV   70 (280)
T ss_pred             CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccc-----c-ccchhhhcc----cceeEEEeccccHHHHHHHhcCCceE
Confidence            699999999999999999999  79999988762     1 111111111    23449999999999999999999999


Q ss_pred             EEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCC--cccCCCCCChhhhhhcCCC
Q 020104           87 LHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVD--MMDETFWSDVDYIRKLDSW  164 (331)
Q Consensus        87 ih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~--~~~E~~~~~~~~~~~~~~~  164 (331)
                      ||+|+........+.+.++++|+.||++|+++|++.+ ++||||+||.++++.......  ..+|+.+.       ...+
T Consensus        71 ~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~-VkrlVytSS~~vv~~~~~~~~~~~~dE~~~~-------~~~~  142 (280)
T PF01073_consen   71 FHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAG-VKRLVYTSSISVVFDNYKGDPIINGDEDTPY-------PSSP  142 (280)
T ss_pred             EEeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEEcCcceeEeccCCCCcccCCcCCcc-------cccc
Confidence            9999987755444455899999999999999999998 999999999999974222222  23455432       1235


Q ss_pred             CchhHhhHHHHHHHHHHHHH---H--cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC-CcccccCCC-ccceeHH
Q 020104          165 GKSYAISKTLTERAALEFAE---E--HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN-REEYGFLLN-TSMVHVD  237 (331)
Q Consensus       165 ~~~Y~~~K~~~e~~~~~~~~---~--~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~i~v~  237 (331)
                      .+.|+.||..+|++++++..   +  ..+.+++|||+.||||++....+.....   ...+. ....+.+.. .+++|++
T Consensus       143 ~~~Y~~SK~~AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d~~~~~~~~~~---~~~g~~~~~~g~~~~~~~~vyV~  219 (280)
T PF01073_consen  143 LDPYAESKALAEKAVLEANGSELKNGGRLRTCALRPAGIYGPGDQRLVPRLVKM---VRSGLFLFQIGDGNNLFDFVYVE  219 (280)
T ss_pred             cCchHHHHHHHHHHHHhhcccccccccceeEEEEeccEEeCcccccccchhhHH---HHhcccceeecCCCceECcEeHH
Confidence            67899999999999998765   2  2489999999999999876533332221   11232 234444443 7999999


Q ss_pred             HHHHHHHHhhcC---C-----CCCceEEEe-ccccC-HHHHHHHHHhhCC
Q 020104          238 DVARAHIFLLEY---P-----DAKGRYICS-SHTLT-IQEMAEFLSAKYP  277 (331)
Q Consensus       238 D~a~~~~~~~~~---~-----~~~~~~~~~-~~~~s-~~e~~~~i~~~~~  277 (331)
                      |+|.+++.+.++   +     ..|+.|+++ +++++ ++|+...+.+.+|
T Consensus       220 NvA~ahvlA~~~L~~~~~~~~~~G~~y~itd~~p~~~~~~f~~~~~~~~G  269 (280)
T PF01073_consen  220 NVAHAHVLAAQALLEPGKPERVAGQAYFITDGEPVPSFWDFMRPLWEALG  269 (280)
T ss_pred             HHHHHHHHHHHHhccccccccCCCcEEEEECCCccCcHHHHHHHHHHHCC
Confidence            999999987652   2     235678875 57788 9999999999888

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=100.00  E-value=6.5e-37  Score=269.67  Aligned_cols=300  Identities=20%  Similarity=0.224  Sum_probs=218.5

Q ss_pred             eEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--Ccc
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--GCT   84 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d   84 (331)
                      +||||||||+||+++++.|+++|++|++++|...    ........+..    ..+++.+.+|+.+.+++.++++  ++|
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~----~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~d   72 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSN----GSPEALKRGER----ITRVTFVEGDLRDRELLDRLFEEHKID   72 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCc----cchhhhhhhcc----ccceEEEECCCCCHHHHHHHHHhCCCc
Confidence            5899999999999999999999999998866431    11111111111    1257888999999999999886  699


Q ss_pred             EEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcC
Q 020104           85 GVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLD  162 (331)
Q Consensus        85 ~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~  162 (331)
                      +|||+|+....  ...++. +.++.|+.++.+++++|++.+ ++++|++||.++|+  .....+++|+++         .
T Consensus        73 ~vv~~ag~~~~~~~~~~~~-~~~~~n~~~~~~l~~~~~~~~-~~~~v~~ss~~~~g--~~~~~~~~e~~~---------~  139 (328)
T TIGR01179        73 AVIHFAGLIAVGESVQDPL-KYYRNNVVNTLNLLEAMQQTG-VKKFIFSSSAAVYG--EPSSIPISEDSP---------L  139 (328)
T ss_pred             EEEECccccCcchhhcCch-hhhhhhHHHHHHHHHHHHhcC-CCEEEEecchhhcC--CCCCCCccccCC---------C
Confidence            99999986532  222344 778999999999999999988 88999999998885  333446788774         2


Q ss_pred             CCCchhHhhHHHHHHHHHHHHHH-cCCcEEEeccCceeCCCCCCCC-------CccHHHHHHHHhCCC--c-------cc
Q 020104          163 SWGKSYAISKTLTERAALEFAEE-HGLDLVTLIPSMVVGPFICPKF-------AGSVRSSLALILGNR--E-------EY  225 (331)
Q Consensus       163 ~~~~~Y~~~K~~~e~~~~~~~~~-~~~~~~ilRp~~v~G~~~~~~~-------~~~~~~~~~~~~~~~--~-------~~  225 (331)
                      .|.+.|+.+|..+|.+++.++.+ .+++++++||+.+||+...+..       ...+..+.....+..  .       ..
T Consensus       140 ~~~~~y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (328)
T TIGR01179       140 GPINPYGRSKLMSERILRDLSKADPGLSYVILRYFNVAGADPEGTIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPT  219 (328)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHhccCCCEEEEecCcccCCCCCCccccCCcccchHHHHHHHHHHhCCCCeEEeCCcccC
Confidence            35678999999999999998877 7899999999999998643211       112222222222221  1       11


Q ss_pred             ccCCC-ccceeHHHHHHHHHHhhcCC---CCCceEEE-eccccCHHHHHHHHHhhCCCCCCCCccCCccccCCcCcccCc
Q 020104          226 GFLLN-TSMVHVDDVARAHIFLLEYP---DAKGRYIC-SSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSS  300 (331)
Q Consensus       226 ~~~~~-~~~i~v~D~a~~~~~~~~~~---~~~~~~~~-~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (331)
                      +.+.. ++|+|++|+++++..++...   ..+++||+ +++.+|++|+++.+.+.+|. +.+................++
T Consensus       220 ~~g~~~~~~v~~~D~a~~~~~~~~~~~~~~~~~~~n~~~~~~~s~~ei~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~  298 (328)
T TIGR01179       220 PDGTCVRDYIHVMDLADAHLAALEYLLNGGESHVYNLGYGQGFSVLEVIEAFKKVSGV-DFPVELAPRRPGDPASLVADA  298 (328)
T ss_pred             CCCceEEeeeeHHHHHHHHHHHHhhhhcCCCcceEEcCCCCcccHHHHHHHHHHHhCC-CcceEeCCCCCccccchhcch
Confidence            12222 68999999999999998752   34578997 56789999999999999883 211100111112223455799


Q ss_pred             HHH-HHcCCccccC-hhhhHHHHHHHHHHc
Q 020104          301 KKL-LDAGFRYNYG-IDEMFDEAIQCCKEK  328 (331)
Q Consensus       301 ~k~-~~lg~~~~~~-~~e~i~~~~~~~~~~  328 (331)
                      +|+ +.|||+|+++ ++++|+++++|++++
T Consensus       299 ~~~~~~lg~~p~~~~l~~~~~~~~~~~~~~  328 (328)
T TIGR01179       299 SKIRRELGWQPKYTDLEIIIKTAWRWESRN  328 (328)
T ss_pred             HHHHHHhCCCCCcchHHHHHHHHHHHHhcC
Confidence            999 7899999997 999999999999864

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=100.00  E-value=7.6e-37  Score=264.23  Aligned_cols=268  Identities=20%  Similarity=0.150  Sum_probs=202.9

Q ss_pred             eEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC--cc
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG--CT   84 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~d   84 (331)
                      ||||||||||||++++++|+++|++|++++|+.                            +|+.|.+++.+++++  +|
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~----------------------------~d~~~~~~~~~~~~~~~~d   52 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQ----------------------------LDLTDPEALERLLRAIRPD   52 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCcc----------------------------cCCCCHHHHHHHHHhCCCC
Confidence            589999999999999999999999999987753                            688899999998875  59


Q ss_pred             EEEEecccCCCC--CCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcC
Q 020104           85 GVLHVATPVDFE--DKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLD  162 (331)
Q Consensus        85 ~Vih~a~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~  162 (331)
                      +|||+|+.....  ..++. ..+++|+.++.+++++|++.+ . +||++||.++|+  .....+++|+++         .
T Consensus        53 ~vi~~a~~~~~~~~~~~~~-~~~~~n~~~~~~l~~~~~~~~-~-~~v~~Ss~~vy~--~~~~~~~~E~~~---------~  118 (287)
T TIGR01214        53 AVVNTAAYTDVDGAESDPE-KAFAVNALAPQNLARAAARHG-A-RLVHISTDYVFD--GEGKRPYREDDA---------T  118 (287)
T ss_pred             EEEECCccccccccccCHH-HHHHHHHHHHHHHHHHHHHcC-C-eEEEEeeeeeec--CCCCCCCCCCCC---------C
Confidence            999999865422  22343 788999999999999999987 4 899999999985  334567888874         2


Q ss_pred             CCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHh-CCCcccccCCCccceeHHHHHH
Q 020104          163 SWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALIL-GNREEYGFLLNTSMVHVDDVAR  241 (331)
Q Consensus       163 ~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~v~D~a~  241 (331)
                      .|.+.|+.+|..+|+.++.+    +++++++||+.+||++...   ..+..+..... +.+........++++|++|+|+
T Consensus       119 ~~~~~Y~~~K~~~E~~~~~~----~~~~~ilR~~~v~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~  191 (287)
T TIGR01214       119 NPLNVYGQSKLAGEQAIRAA----GPNALIVRTSWLYGGGGGR---NFVRTMLRLAGRGEELRVVDDQIGSPTYAKDLAR  191 (287)
T ss_pred             CCcchhhHHHHHHHHHHHHh----CCCeEEEEeeecccCCCCC---CHHHHHHHHhhcCCCceEecCCCcCCcCHHHHHH
Confidence            45678999999999999874    6899999999999997432   12223333222 2222222222379999999999


Q ss_pred             HHHHhhcCC-CCCceEEEe-ccccCHHHHHHHHHhhCCCCCCCC----ccC-----Ccc-ccCCcCcccCcHHH-HHcCC
Q 020104          242 AHIFLLEYP-DAKGRYICS-SHTLTIQEMAEFLSAKYPEYPIPT----VDS-----LAE-IEGYRAPGSSSKKL-LDAGF  308 (331)
Q Consensus       242 ~~~~~~~~~-~~~~~~~~~-~~~~s~~e~~~~i~~~~~~~~~~~----~~~-----~~~-~~~~~~~~~~~~k~-~~lg~  308 (331)
                      ++..++..+ ..+++||++ ++.+|+.|+++.+.+.++......    ...     +.. ........+|++|+ +.+||
T Consensus       192 a~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~lg~  271 (287)
T TIGR01214       192 VIAALLQRLARARGVYHLANSGQCSWYEFAQAIFEEAGADGLLLHPQEVKPISSKEYPRPARRPAYSVLDNTKLVKTLGT  271 (287)
T ss_pred             HHHHHHhhccCCCCeEEEECCCCcCHHHHHHHHHHHhCcccccccCceeEeecHHHcCCCCCCCCccccchHHHHHHcCC
Confidence            999999876 467899865 578999999999999888332210    000     010 11224567999999 77999


Q ss_pred             ccccChhhhHHHHHHH
Q 020104          309 RYNYGIDEMFDEAIQC  324 (331)
Q Consensus       309 ~~~~~~~e~i~~~~~~  324 (331)
                      .+. +++++|+++++.
T Consensus       272 ~~~-~~~~~l~~~~~~  286 (287)
T TIGR01214       272 PLP-HWREALRAYLQE  286 (287)
T ss_pred             CCc-cHHHHHHHHHhh
Confidence            655 999999998763

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=100.00  E-value=2.2e-37  Score=270.99  Aligned_cols=270  Identities=19%  Similarity=0.192  Sum_probs=203.8

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      +|+||||||+||||++++++|+++|  ++|++++|+.     .....+..  ...  ..++.++.+|+.|.+++.+++.+
T Consensus         4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~-----~~~~~~~~--~~~--~~~~~~v~~Dl~d~~~l~~~~~~   74 (324)
T TIGR03589         4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDE-----LKQWEMQQ--KFP--APCLRFFIGDVRDKERLTRALRG   74 (324)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCCh-----hHHHHHHH--HhC--CCcEEEEEccCCCHHHHHHHHhc
Confidence            5789999999999999999999986  7899998876     22111111  111  14688999999999999999999


Q ss_pred             ccEEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhh
Q 020104           83 CTGVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRK  160 (331)
Q Consensus        83 ~d~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~  160 (331)
                      +|+|||+|+....  ...++. +.+++|+.++.+++++|++.+ +++||++||....                       
T Consensus        75 iD~Vih~Ag~~~~~~~~~~~~-~~~~~Nv~g~~~ll~aa~~~~-~~~iV~~SS~~~~-----------------------  129 (324)
T TIGR03589        75 VDYVVHAAALKQVPAAEYNPF-ECIRTNINGAQNVIDAAIDNG-VKRVVALSTDKAA-----------------------  129 (324)
T ss_pred             CCEEEECcccCCCchhhcCHH-HHHHHHHHHHHHHHHHHHHcC-CCEEEEEeCCCCC-----------------------
Confidence            9999999986532  233454 889999999999999999988 8899999995321                       


Q ss_pred             cCCCCchhHhhHHHHHHHHHHHHH---HcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHh-CC-CcccccCCC-ccce
Q 020104          161 LDSWGKSYAISKTLTERAALEFAE---EHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALIL-GN-REEYGFLLN-TSMV  234 (331)
Q Consensus       161 ~~~~~~~Y~~~K~~~e~~~~~~~~---~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~-~~~i  234 (331)
                        .|.++|+.+|.++|.+++.++.   .++++++++||+++|||+..     .+..+..... +. ...+..+.. ++|+
T Consensus       130 --~p~~~Y~~sK~~~E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~~~-----~i~~~~~~~~~~~~~~~i~~~~~~r~~i  202 (324)
T TIGR03589       130 --NPINLYGATKLASDKLFVAANNISGSKGTRFSVVRYGNVVGSRGS-----VVPFFKSLKEEGVTELPITDPRMTRFWI  202 (324)
T ss_pred             --CCCCHHHHHHHHHHHHHHHHHhhccccCcEEEEEeecceeCCCCC-----cHHHHHHHHHhCCCCeeeCCCCceEeeE
Confidence              2356799999999999987543   46899999999999998632     3333333333 33 233333333 7999


Q ss_pred             eHHHHHHHHHHhhcCCCCCceEEEeccccCHHHHHHHHHhhCCCCCCCCccCCccccC-CcCcccCcHHH-HHcCCcccc
Q 020104          235 HVDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEG-YRAPGSSSKKL-LDAGFRYNY  312 (331)
Q Consensus       235 ~v~D~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~k~-~~lg~~~~~  312 (331)
                      |++|+|++++.++++...+.+|++++..+++.|+++.+.+..+....+.     +..+ .....+|.+|+ +.|||+|++
T Consensus       203 ~v~D~a~a~~~al~~~~~~~~~~~~~~~~sv~el~~~i~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~lg~~~~~  277 (324)
T TIGR03589       203 TLEQGVNFVLKSLERMLGGEIFVPKIPSMKITDLAEAMAPECPHKIVGI-----RPGEKLHEVMITEDDARHTYELGDYY  277 (324)
T ss_pred             EHHHHHHHHHHHHhhCCCCCEEccCCCcEEHHHHHHHHHhhCCeeEeCC-----CCCchhHhhhcChhhhhhhcCCCCeE
Confidence            9999999999999875445677766678999999999998765221111     1111 13355799999 889999999


Q ss_pred             ChhhhHHH
Q 020104          313 GIDEMFDE  320 (331)
Q Consensus       313 ~~~e~i~~  320 (331)
                      ++++++++
T Consensus       278 ~l~~~~~~  285 (324)
T TIGR03589       278 AILPSISF  285 (324)
T ss_pred             EEcccccc
Confidence            99999874

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=100.00  E-value=1.2e-37  Score=267.16  Aligned_cols=269  Identities=23%  Similarity=0.211  Sum_probs=189.9

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--Cc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--GC   83 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~   83 (331)
                      ||||||||+|+||++|+++|.+.|++|+.+.|+.                            .|+.|.+++.+.++  ++
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~----------------------------~dl~d~~~~~~~~~~~~p   52 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGYEVIATSRSD----------------------------LDLTDPEAVAKLLEAFKP   52 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTC----------------------------S-TTSHHHHHHHHHHH--
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchh----------------------------cCCCCHHHHHHHHHHhCC
Confidence            6999999999999999999999999999986654                            78899999999886  59


Q ss_pred             cEEEEecccCC--CCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhc
Q 020104           84 TGVLHVATPVD--FEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKL  161 (331)
Q Consensus        84 d~Vih~a~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~  161 (331)
                      |+|||||+..+  ....++. ..+++|+.++.+|+++|++.+  .++||+||..||.  .....+++|+++         
T Consensus        53 d~Vin~aa~~~~~~ce~~p~-~a~~iN~~~~~~la~~~~~~~--~~li~~STd~VFd--G~~~~~y~E~d~---------  118 (286)
T PF04321_consen   53 DVVINCAAYTNVDACEKNPE-EAYAINVDATKNLAEACKERG--ARLIHISTDYVFD--GDKGGPYTEDDP---------  118 (286)
T ss_dssp             SEEEE------HHHHHHSHH-HHHHHHTHHHHHHHHHHHHCT---EEEEEEEGGGS---SSTSSSB-TTS----------
T ss_pred             CeEeccceeecHHhhhhChh-hhHHHhhHHHHHHHHHHHHcC--CcEEEeeccEEEc--CCcccccccCCC---------
Confidence            99999998765  2334555 899999999999999999998  5999999999995  335667899985         


Q ss_pred             CCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC-cccccCCCccceeHHHHH
Q 020104          162 DSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR-EEYGFLLNTSMVHVDDVA  240 (331)
Q Consensus       162 ~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~v~D~a  240 (331)
                      +.|.+.||.+|+.+|+.++...    -++.|+|++.+||+...    ..+..+........ ........++++|++|+|
T Consensus       119 ~~P~~~YG~~K~~~E~~v~~~~----~~~~IlR~~~~~g~~~~----~~~~~~~~~~~~~~~i~~~~d~~~~p~~~~dlA  190 (286)
T PF04321_consen  119 PNPLNVYGRSKLEGEQAVRAAC----PNALILRTSWVYGPSGR----NFLRWLLRRLRQGEPIKLFDDQYRSPTYVDDLA  190 (286)
T ss_dssp             ---SSHHHHHHHHHHHHHHHH-----SSEEEEEE-SEESSSSS----SHHHHHHHHHHCTSEEEEESSCEE--EEHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHhc----CCEEEEecceecccCCC----chhhhHHHHHhcCCeeEeeCCceeCCEEHHHHH
Confidence            4678999999999999999843    38999999999999322    34445555444333 333333337999999999


Q ss_pred             HHHHHhhcCCCC----CceEEE-eccccCHHHHHHHHHhhCCCCC--CCCc--cCCcc-ccCCcCcccCcHHH-HHcCCc
Q 020104          241 RAHIFLLEYPDA----KGRYIC-SSHTLTIQEMAEFLSAKYPEYP--IPTV--DSLAE-IEGYRAPGSSSKKL-LDAGFR  309 (331)
Q Consensus       241 ~~~~~~~~~~~~----~~~~~~-~~~~~s~~e~~~~i~~~~~~~~--~~~~--~~~~~-~~~~~~~~~~~~k~-~~lg~~  309 (331)
                      +++..++++...    .|+||+ +++.+|+.|+++.+.+.++...  +.+.  ..+.. ...+.+..+|++|+ +.+|++
T Consensus       191 ~~i~~l~~~~~~~~~~~Giyh~~~~~~~S~~e~~~~i~~~~~~~~~~i~~~~~~~~~~~~~rp~~~~L~~~kl~~~~g~~  270 (286)
T PF04321_consen  191 RVILELIEKNLSGASPWGIYHLSGPERVSRYEFAEAIAKILGLDPELIKPVSSSEFPRAAPRPRNTSLDCRKLKNLLGIK  270 (286)
T ss_dssp             HHHHHHHHHHHH-GGG-EEEE---BS-EEHHHHHHHHHHHHTHCTTEEEEESSTTSTTSSGS-SBE-B--HHHHHCTTS-
T ss_pred             HHHHHHHHhcccccccceeEEEecCcccCHHHHHHHHHHHhCCCCceEEecccccCCCCCCCCCcccccHHHHHHccCCC
Confidence            999999987643    689996 5678999999999999887221  1110  01111 14456789999999 778999


Q ss_pred             cccChhhhHHHHHHHH
Q 020104          310 YNYGIDEMFDEAIQCC  325 (331)
Q Consensus       310 ~~~~~~e~i~~~~~~~  325 (331)
                      +. +|+++++++++.|
T Consensus       271 ~~-~~~~~l~~~~~~~  285 (286)
T PF04321_consen  271 PP-PWREGLEELVKQY  285 (286)
T ss_dssp             ---BHHHHHHHHHHHH
T ss_pred             Cc-CHHHHHHHHHHHh
Confidence            99 9999999999876

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=5.8e-36  Score=247.46  Aligned_cols=266  Identities=21%  Similarity=0.174  Sum_probs=212.3

Q ss_pred             eEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--Ccc
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--GCT   84 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d   84 (331)
                      +|||||++|++|++|++.|. .+++|+.++|..                            +|++|++.+.++++  ++|
T Consensus         2 ~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~----------------------------~Ditd~~~v~~~i~~~~PD   52 (281)
T COG1091           2 KILITGANGQLGTELRRALP-GEFEVIATDRAE----------------------------LDITDPDAVLEVIRETRPD   52 (281)
T ss_pred             cEEEEcCCChHHHHHHHHhC-CCceEEeccCcc----------------------------ccccChHHHHHHHHhhCCC
Confidence            59999999999999999998 779999988865                            79999999999997  689


Q ss_pred             EEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcC
Q 020104           85 GVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLD  162 (331)
Q Consensus        85 ~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~  162 (331)
                      +|||+|+....  ...++. ..+.+|..++.+++++|++.|  .++||+||.+||.  .....++.|+++         +
T Consensus        53 vVIn~AAyt~vD~aE~~~e-~A~~vNa~~~~~lA~aa~~~g--a~lVhiSTDyVFD--G~~~~~Y~E~D~---------~  118 (281)
T COG1091          53 VVINAAAYTAVDKAESEPE-LAFAVNATGAENLARAAAEVG--ARLVHISTDYVFD--GEKGGPYKETDT---------P  118 (281)
T ss_pred             EEEECccccccccccCCHH-HHHHhHHHHHHHHHHHHHHhC--CeEEEeecceEec--CCCCCCCCCCCC---------C
Confidence            99999998773  344444 899999999999999999999  6999999999994  334578999985         5


Q ss_pred             CCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCC-ccceeHHHHHH
Q 020104          163 SWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLN-TSMVHVDDVAR  241 (331)
Q Consensus       163 ~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~D~a~  241 (331)
                      .|.+.||+||+++|..++.+    +-+..|+|.+++||....    ..+..++..............+ .+.+++.|+|+
T Consensus       119 ~P~nvYG~sKl~GE~~v~~~----~~~~~I~Rtswv~g~~g~----nFv~tml~la~~~~~l~vv~Dq~gsPt~~~dlA~  190 (281)
T COG1091         119 NPLNVYGRSKLAGEEAVRAA----GPRHLILRTSWVYGEYGN----NFVKTMLRLAKEGKELKVVDDQYGSPTYTEDLAD  190 (281)
T ss_pred             CChhhhhHHHHHHHHHHHHh----CCCEEEEEeeeeecCCCC----CHHHHHHHHhhcCCceEEECCeeeCCccHHHHHH
Confidence            78899999999999999885    468999999999998642    2333344444433333333333 68999999999


Q ss_pred             HHHHhhcCCCCCceEEEec-cccCHHHHHHHHHhhCC---CCCCCC-ccCCccc-cCCcCcccCcHHH-HHcCCccccCh
Q 020104          242 AHIFLLEYPDAKGRYICSS-HTLTIQEMAEFLSAKYP---EYPIPT-VDSLAEI-EGYRAPGSSSKKL-LDAGFRYNYGI  314 (331)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~-~~~s~~e~~~~i~~~~~---~~~~~~-~~~~~~~-~~~~~~~~~~~k~-~~lg~~~~~~~  314 (331)
                      ++..++.....+++||+++ +..||.|+++.+.+..+   ...-+. ...++.. ..+....+++.|+ +.+|+.|. +|
T Consensus       191 ~i~~ll~~~~~~~~yH~~~~g~~Swydfa~~I~~~~~~~~~v~~~~~~~~~~~~a~RP~~S~L~~~k~~~~~g~~~~-~w  269 (281)
T COG1091         191 AILELLEKEKEGGVYHLVNSGECSWYEFAKAIFEEAGVDGEVIEPIASAEYPTPAKRPANSSLDTKKLEKAFGLSLP-EW  269 (281)
T ss_pred             HHHHHHhccccCcEEEEeCCCcccHHHHHHHHHHHhCCCccccccccccccCccCCCCcccccchHHHHHHhCCCCc-cH
Confidence            9999999988888999755 56799999999999876   121111 1112222 5556778999999 88899999 99


Q ss_pred             hhhHHHHHHH
Q 020104          315 DEMFDEAIQC  324 (331)
Q Consensus       315 ~e~i~~~~~~  324 (331)
                      +++++++++.
T Consensus       270 ~~~l~~~~~~  279 (281)
T COG1091         270 REALKALLDE  279 (281)
T ss_pred             HHHHHHHHhh
Confidence            9999998874

>PLN00016 RNA-binding protein; Provisional

Probab=100.00  E-value=3.8e-36  Score=268.87  Aligned_cols=281  Identities=18%  Similarity=0.166  Sum_probs=200.8

Q ss_pred             CCCceEEEe----cCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccc-----cccCCCCCCCcEEEEeCCCCCC
Q 020104            3 EGKGRVCVT----GGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLS-----FLKNLPGASERLRIFHADLSHP   73 (331)
Q Consensus         3 ~~~~~ilVt----GatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~D~~~~   73 (331)
                      .++|+||||    |||||||++|+++|+++||+|++++|+..     ....+.     .+.++.  ..+++++.+|+.| 
T Consensus        50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~-----~~~~~~~~~~~~~~~l~--~~~v~~v~~D~~d-  121 (378)
T PLN00016         50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKE-----PSQKMKKEPFSRFSELS--SAGVKTVWGDPAD-  121 (378)
T ss_pred             cccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCc-----chhhhccCchhhhhHhh--hcCceEEEecHHH-
Confidence            356789999    99999999999999999999999999872     211110     000110  1358899999977 


Q ss_pred             ccHHHHh--cCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCC
Q 020104           74 DGFDAAI--AGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETF  151 (331)
Q Consensus        74 ~~~~~~~--~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~  151 (331)
                        +.+++  .++|+|||+++.               +..++.+++++|++.+ +++|||+||.++|+  .....+..|++
T Consensus       122 --~~~~~~~~~~d~Vi~~~~~---------------~~~~~~~ll~aa~~~g-vkr~V~~SS~~vyg--~~~~~p~~E~~  181 (378)
T PLN00016        122 --VKSKVAGAGFDVVYDNNGK---------------DLDEVEPVADWAKSPG-LKQFLFCSSAGVYK--KSDEPPHVEGD  181 (378)
T ss_pred             --HHhhhccCCccEEEeCCCC---------------CHHHHHHHHHHHHHcC-CCEEEEEccHhhcC--CCCCCCCCCCC
Confidence              44444  479999998652               1345788999999998 99999999999985  33344566665


Q ss_pred             CCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHH-HHHhCCCccc-ccCC
Q 020104          152 WSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSL-ALILGNREEY-GFLL  229 (331)
Q Consensus       152 ~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~  229 (331)
                      +.         .|   +. +|..+|.+++.    .+++++++||+.+||++....   ....+. ....+.+..+ +.+.
T Consensus       182 ~~---------~p---~~-sK~~~E~~l~~----~~l~~~ilRp~~vyG~~~~~~---~~~~~~~~~~~~~~i~~~g~g~  241 (378)
T PLN00016        182 AV---------KP---KA-GHLEVEAYLQK----LGVNWTSFRPQYIYGPGNNKD---CEEWFFDRLVRGRPVPIPGSGI  241 (378)
T ss_pred             cC---------CC---cc-hHHHHHHHHHH----cCCCeEEEeceeEECCCCCCc---hHHHHHHHHHcCCceeecCCCC
Confidence            32         22   22 79999987754    589999999999999975432   122222 2233444333 2333


Q ss_pred             C-ccceeHHHHHHHHHHhhcCCC-CCceEEEe-ccccCHHHHHHHHHhhCCCCC-C-CCccCCccc-------cCCcCcc
Q 020104          230 N-TSMVHVDDVARAHIFLLEYPD-AKGRYICS-SHTLTIQEMAEFLSAKYPEYP-I-PTVDSLAEI-------EGYRAPG  297 (331)
Q Consensus       230 ~-~~~i~v~D~a~~~~~~~~~~~-~~~~~~~~-~~~~s~~e~~~~i~~~~~~~~-~-~~~~~~~~~-------~~~~~~~  297 (331)
                      . ++|+|++|+|++++.++.++. .+++||++ ++.+|+.|+++.+.+..|... + .........       .......
T Consensus       242 ~~~~~i~v~Dva~ai~~~l~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~~~~~~~~~~p~~~~~~~  321 (378)
T PLN00016        242 QLTQLGHVKDLASMFALVVGNPKAAGQIFNIVSDRAVTFDGMAKACAKAAGFPEEIVHYDPKAVGFGAKKAFPFRDQHFF  321 (378)
T ss_pred             eeeceecHHHHHHHHHHHhcCccccCCEEEecCCCccCHHHHHHHHHHHhCCCCceeecCccccCccccccccccccccc
Confidence            3 689999999999999998764 46789975 467999999999999887321 1 110010000       1123445


Q ss_pred             cCcHHH-HHcCCccccChhhhHHHHHHHHHHcCCC
Q 020104          298 SSSKKL-LDAGFRYNYGIDEMFDEAIQCCKEKGYL  331 (331)
Q Consensus       298 ~~~~k~-~~lg~~~~~~~~e~i~~~~~~~~~~~~~  331 (331)
                      .|++|+ +.|||+|+++++|+|+++++||+.+|.+
T Consensus       322 ~d~~ka~~~LGw~p~~~l~egl~~~~~~~~~~~~~  356 (378)
T PLN00016        322 ASPRKAKEELGWTPKFDLVEDLKDRYELYFGRGRD  356 (378)
T ss_pred             cCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            799999 8899999999999999999999998864

>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=7.6e-35  Score=234.45  Aligned_cols=308  Identities=19%  Similarity=0.166  Sum_probs=237.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCC-CCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPG-ASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      |+|+.||||-||+-|++|++.|+++||+|+++.|....   .....+ .+...+. ..+++.++.+|++|...+..+++ 
T Consensus         1 ~~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~---~n~~ri-~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~   76 (345)
T COG1089           1 MGKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSS---FNTPRI-HLYEDPHLNDPRLHLHYGDLTDSSNLLRILEE   76 (345)
T ss_pred             CCceEEEecccCCchHHHHHHHHhcCcEEEEEeecccc---CCcccc-eeccccccCCceeEEEeccccchHHHHHHHHh
Confidence            35789999999999999999999999999999998631   122222 3333322 23568899999999999999986 


Q ss_pred             -CccEEEEecccCC--CCCCChhhHHHHHHHHHHHHHHHHHHhcCC-ccEEEEecccceeecCCCCCCcccCCCCCChhh
Q 020104           82 -GCTGVLHVATPVD--FEDKEPEEVITQRAINGTLGILKSCLKSGT-VKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDY  157 (331)
Q Consensus        82 -~~d~Vih~a~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~  157 (331)
                       ++|-|+|+|+...  .+...|. ...+++..|+.+|+++.+-.+. -.||.+.||+..||  ...+.|.+|++|     
T Consensus        77 v~PdEIYNLaAQS~V~vSFe~P~-~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG--~v~~~pq~E~TP-----  148 (345)
T COG1089          77 VQPDEIYNLAAQSHVGVSFEQPE-YTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYG--LVQEIPQKETTP-----  148 (345)
T ss_pred             cCchhheeccccccccccccCcc-eeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhc--CcccCccccCCC-----
Confidence             6899999998655  4555676 8889999999999999998762 35999999999885  567889999997     


Q ss_pred             hhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCC-ccHHHHH-HHHhCCC--cccccCCC-cc
Q 020104          158 IRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFA-GSVRSSL-ALILGNR--EEYGFLLN-TS  232 (331)
Q Consensus       158 ~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~-~~~~~~~-~~~~~~~--~~~~~~~~-~~  232 (331)
                          ..|.|||+.+|+.+..+...|.+.+|+-.+.=+..+.-+|.....+. +-+.... ....|..  ..+++... +|
T Consensus       149 ----FyPrSPYAvAKlYa~W~tvNYResYgl~AcnGILFNHESP~Rge~FVTRKIt~ava~Ik~G~q~~l~lGNldAkRD  224 (345)
T COG1089         149 ----FYPRSPYAVAKLYAYWITVNYRESYGLFACNGILFNHESPLRGETFVTRKITRAVARIKLGLQDKLYLGNLDAKRD  224 (345)
T ss_pred             ----CCCCCHHHHHHHHHHheeeehHhhcCceeecceeecCCCCCCccceehHHHHHHHHHHHccccceEEecccccccc
Confidence                47899999999999999999999999998877777777776654332 1122222 2334444  33444444 89


Q ss_pred             ceeHHHHHHHHHHhhcCCCCCceEEEeccccCHHHHHHHHHhhCC-CCC-------------------CCCccCCccccC
Q 020104          233 MVHVDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYP-EYP-------------------IPTVDSLAEIEG  292 (331)
Q Consensus       233 ~i~v~D~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~~-~~~-------------------~~~~~~~~~~~~  292 (331)
                      |-|+.|.+++++.+++++.+.....++++..|++|++++..+..| .+.                   +.....+-+...
T Consensus       225 WG~A~DYVe~mwlmLQq~~PddyViATg~t~sVrefv~~Af~~~g~~l~w~g~g~~e~g~da~~G~~~V~idp~~fRPaE  304 (345)
T COG1089         225 WGHAKDYVEAMWLMLQQEEPDDYVIATGETHSVREFVELAFEMVGIDLEWEGTGVDEKGVDAKTGKIIVEIDPRYFRPAE  304 (345)
T ss_pred             ccchHHHHHHHHHHHccCCCCceEEecCceeeHHHHHHHHHHHcCceEEEeeccccccccccccCceeEEECccccCchh
Confidence            999999999999999998755555678999999999999999776 111                   111112222244


Q ss_pred             CcCcccCcHHH-HHcCCccccChhhhHHHHHHHHHH
Q 020104          293 YRAPGSSSKKL-LDAGFRYNYGIDEMFDEAIQCCKE  327 (331)
Q Consensus       293 ~~~~~~~~~k~-~~lg~~~~~~~~e~i~~~~~~~~~  327 (331)
                      ..-...|++|+ +.|||+|.++++|.++.|+++..+
T Consensus       305 V~~Llgdp~KA~~~LGW~~~~~~~elv~~Mv~~dl~  340 (345)
T COG1089         305 VDLLLGDPTKAKEKLGWRPEVSLEELVREMVEADLE  340 (345)
T ss_pred             hhhhcCCHHHHHHHcCCccccCHHHHHHHHHHHHHH
Confidence            45677899999 899999999999999999997654

>KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.8e-35  Score=227.69  Aligned_cols=287  Identities=21%  Similarity=0.248  Sum_probs=220.6

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY--SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      +|||||||++|.+|+++++.+..+|.  +=.++.-+.                           .+|+++.++.+++++ 
T Consensus         1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~sk---------------------------d~DLt~~a~t~~lF~~   53 (315)
T KOG1431|consen    1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGSK---------------------------DADLTNLADTRALFES   53 (315)
T ss_pred             CceEEEecCCchHHHHHHHHHHhcCCCCcceEEeccc---------------------------cccccchHHHHHHHhc
Confidence            36999999999999999999998874  222222221                           378999999999996 


Q ss_pred             -CccEEEEecccCC---CCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhh
Q 020104           82 -GCTGVLHVATPVD---FEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDY  157 (331)
Q Consensus        82 -~~d~Vih~a~~~~---~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~  157 (331)
                       ++.+|||+|++++   .....+. +++..|+.---|++..|-++| +++++++.|+++|  ++....|++|....    
T Consensus        54 ekPthVIhlAAmVGGlf~N~~ynl-dF~r~Nl~indNVlhsa~e~g-v~K~vsclStCIf--Pdkt~yPIdEtmvh----  125 (315)
T KOG1431|consen   54 EKPTHVIHLAAMVGGLFHNNTYNL-DFIRKNLQINDNVLHSAHEHG-VKKVVSCLSTCIF--PDKTSYPIDETMVH----  125 (315)
T ss_pred             cCCceeeehHhhhcchhhcCCCch-HHHhhcceechhHHHHHHHhc-hhhhhhhcceeec--CCCCCCCCCHHHhc----
Confidence             6999999999877   2233444 899999999999999999999 9999999999998  67777888887632    


Q ss_pred             hhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCC------CccHHHHHHHHhCCC---cccccC
Q 020104          158 IRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKF------AGSVRSSLALILGNR---EEYGFL  228 (331)
Q Consensus       158 ~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~------~~~~~~~~~~~~~~~---~~~~~~  228 (331)
                      ..|+.+.+..|+..|+++.-.-+.|..++|..++.+.|+++|||.++...      +..+.++-.+.....   ..++.+
T Consensus       126 ~gpphpsN~gYsyAKr~idv~n~aY~~qhg~~~tsviPtNvfGphDNfnpe~sHVlPali~r~h~ak~~gtd~~~VwGsG  205 (315)
T KOG1431|consen  126 NGPPHPSNFGYSYAKRMIDVQNQAYRQQHGRDYTSVIPTNVFGPHDNFNPENSHVLPALIHRFHEAKRNGTDELTVWGSG  205 (315)
T ss_pred             cCCCCCCchHHHHHHHHHHHHHHHHHHHhCCceeeeccccccCCCCCCCcccccchHHHHHHHHHHHhcCCceEEEecCC
Confidence            12333334579999999888889999999999999999999999876422      333333333333222   455666


Q ss_pred             CC-ccceeHHHHHHHHHHhhcCCCCCceEE-Eecc--ccCHHHHHHHHHhhCC-CCCCCCccCCccccCCcCcccCcHHH
Q 020104          229 LN-TSMVHVDDVARAHIFLLEYPDAKGRYI-CSSH--TLTIQEMAEFLSAKYP-EYPIPTVDSLAEIEGYRAPGSSSKKL  303 (331)
Q Consensus       229 ~~-~~~i~v~D~a~~~~~~~~~~~~~~~~~-~~~~--~~s~~e~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~k~  303 (331)
                      .. ++|+|++|+|+++++++.+-..-+-.+ ..++  .+|++|+++.+.+..+ .-.+..  +..+..+......|++|+
T Consensus       206 ~PlRqFiys~DLA~l~i~vlr~Y~~vEpiils~ge~~EVtI~e~aeaV~ea~~F~G~l~~--DttK~DGq~kKtasnsKL  283 (315)
T KOG1431|consen  206 SPLRQFIYSDDLADLFIWVLREYEGVEPIILSVGESDEVTIREAAEAVVEAVDFTGKLVW--DTTKSDGQFKKTASNSKL  283 (315)
T ss_pred             ChHHHHhhHhHHHHHHHHHHHhhcCccceEeccCccceeEHHHHHHHHHHHhCCCceEEe--eccCCCCCcccccchHHH
Confidence            55 899999999999999998755444444 4454  7999999999999887 222222  223335566778999999


Q ss_pred             HHcCCccccC-hhhhHHHHHHHHHHc
Q 020104          304 LDAGFRYNYG-IDEMFDEAIQCCKEK  328 (331)
Q Consensus       304 ~~lg~~~~~~-~~e~i~~~~~~~~~~  328 (331)
                      +.|+|.|+++ |+++|.++++||.++
T Consensus       284 ~sl~pd~~ft~l~~ai~~t~~Wy~~N  309 (315)
T KOG1431|consen  284 RSLLPDFKFTPLEQAISETVQWYLDN  309 (315)
T ss_pred             HHhCCCcccChHHHHHHHHHHHHHHh
Confidence            9999999995 999999999999765

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=100.00  E-value=8.1e-35  Score=244.42  Aligned_cols=227  Identities=27%  Similarity=0.322  Sum_probs=182.1

Q ss_pred             EEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC--ccE
Q 020104            8 VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG--CTG   85 (331)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~d~   85 (331)
                      |||||||||||++++++|+++|++|+.+.|+.     .........       .+++++.+|+.|.+.+.+++++  +|+
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~-----~~~~~~~~~-------~~~~~~~~dl~~~~~~~~~~~~~~~d~   68 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSS-----NSESFEEKK-------LNVEFVIGDLTDKEQLEKLLEKANIDV   68 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTTEEEEEESCS-----TGGHHHHHH-------TTEEEEESETTSHHHHHHHHHHHTESE
T ss_pred             EEEEccCCHHHHHHHHHHHHcCCccccccccc-----ccccccccc-------ceEEEEEeeccccccccccccccCceE
Confidence            79999999999999999999999999999887     222211110       2789999999999999999974  599


Q ss_pred             EEEecccCC--CCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCC
Q 020104           86 VLHVATPVD--FEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDS  163 (331)
Q Consensus        86 Vih~a~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~  163 (331)
                      |||+|+...  ....++. ..++.|+.++.+++++|++.+ +++||++||..+|+  .....+++|+++         ..
T Consensus        69 vi~~a~~~~~~~~~~~~~-~~~~~n~~~~~~ll~~~~~~~-~~~~i~~sS~~~y~--~~~~~~~~e~~~---------~~  135 (236)
T PF01370_consen   69 VIHLAAFSSNPESFEDPE-EIIEANVQGTRNLLEAAREAG-VKRFIFLSSASVYG--DPDGEPIDEDSP---------IN  135 (236)
T ss_dssp             EEEEBSSSSHHHHHHSHH-HHHHHHHHHHHHHHHHHHHHT-TSEEEEEEEGGGGT--SSSSSSBETTSG---------CC
T ss_pred             EEEeeccccccccccccc-ccccccccccccccccccccc-cccccccccccccc--cccccccccccc---------cc
Confidence            999999753  1123444 889999999999999999999 79999999999985  346677888885         25


Q ss_pred             CCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCC-CCCCCCccHHHHHH-HHhCCCc-ccccCCC-ccceeHHHH
Q 020104          164 WGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPF-ICPKFAGSVRSSLA-LILGNRE-EYGFLLN-TSMVHVDDV  239 (331)
Q Consensus       164 ~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~-~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~-~~~i~v~D~  239 (331)
                      |.++|+.+|..+|+.++.+.++++++++++||+.+|||. ........+..+.. ...+++. .++.+.. ++|+|++|+
T Consensus       136 ~~~~Y~~~K~~~e~~~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~  215 (236)
T PF01370_consen  136 PLSPYGASKRAAEELLRDYAKKYGLRVTILRPPNVYGPGNPNNNSSSFLPSLIRQALKGKPIKIPGDGSQVRDFIHVDDL  215 (236)
T ss_dssp             HSSHHHHHHHHHHHHHHHHHHHHTSEEEEEEESEEESTTSSSSSTSSHHHHHHHHHHTTSSEEEESTSSCEEEEEEHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhHHhhcCCcccccCCCCCccceEEHHHH
Confidence            577899999999999999999889999999999999998 22222334444443 4455543 3444454 899999999


Q ss_pred             HHHHHHhhcCCC-CCceEEEe
Q 020104          240 ARAHIFLLEYPD-AKGRYICS  259 (331)
Q Consensus       240 a~~~~~~~~~~~-~~~~~~~~  259 (331)
                      |++++.+++++. .+++||++
T Consensus       216 a~~~~~~~~~~~~~~~~yNig  236 (236)
T PF01370_consen  216 AEAIVAALENPKAAGGIYNIG  236 (236)
T ss_dssp             HHHHHHHHHHSCTTTEEEEES
T ss_pred             HHHHHHHHhCCCCCCCEEEeC
Confidence            999999999988 78899974

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=100.00  E-value=5.5e-34  Score=243.92  Aligned_cols=303  Identities=23%  Similarity=0.292  Sum_probs=217.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      ++.+++||||+||+|+||+++|++.+  .+|++++..+     ............  ....++++.+|+.|..++..++.
T Consensus         3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~-----~~~~~~~e~~~~--~~~~v~~~~~D~~~~~~i~~a~~   75 (361)
T KOG1430|consen    3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTP-----TQSNLPAELTGF--RSGRVTVILGDLLDANSISNAFQ   75 (361)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCc-----cccccchhhhcc--cCCceeEEecchhhhhhhhhhcc
Confidence            35689999999999999999999987  8899998877     211111111110  23679999999999999999999


Q ss_pred             CccEEEEecccCC--CCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhh
Q 020104           82 GCTGVLHVATPVD--FEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIR  159 (331)
Q Consensus        82 ~~d~Vih~a~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~  159 (331)
                      ++ .|+|||+...  ....++. ..+++|+.||++++++|++.+ ++++||+||..|..++.. ...-+|+.|..     
T Consensus        76 ~~-~Vvh~aa~~~~~~~~~~~~-~~~~vNV~gT~nvi~~c~~~~-v~~lIYtSs~~Vvf~g~~-~~n~~E~~p~p-----  146 (361)
T KOG1430|consen   76 GA-VVVHCAASPVPDFVENDRD-LAMRVNVNGTLNVIEACKELG-VKRLIYTSSAYVVFGGEP-IINGDESLPYP-----  146 (361)
T ss_pred             Cc-eEEEeccccCccccccchh-hheeecchhHHHHHHHHHHhC-CCEEEEecCceEEeCCee-cccCCCCCCCc-----
Confidence            99 7888886433  3333455 899999999999999999999 999999999999974433 33445555421     


Q ss_pred             hcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHh-CCC-cccccCCC-ccceeH
Q 020104          160 KLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALIL-GNR-EEYGFLLN-TSMVHV  236 (331)
Q Consensus       160 ~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~-~~~i~v  236 (331)
                        ..+..+|+.||..+|+++++.....++.++.|||+.||||++....+    .+...+. +.- ...+.... -+++++
T Consensus       147 --~~~~d~Y~~sKa~aE~~Vl~an~~~~l~T~aLR~~~IYGpgd~~~~~----~i~~~~~~g~~~f~~g~~~~~~~~~~~  220 (361)
T KOG1430|consen  147 --LKHIDPYGESKALAEKLVLEANGSDDLYTCALRPPGIYGPGDKRLLP----KIVEALKNGGFLFKIGDGENLNDFTYG  220 (361)
T ss_pred             --cccccccchHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCccccH----HHHHHHHccCceEEeeccccccceEEe
Confidence              22345899999999999999876567999999999999999765333    2233322 222 33334433 589999


Q ss_pred             HHHHHHHHHhhc-----CCCC-CceEEEe-ccccCHHHHHHHHHhhCCC-CC----CCCcc-------------C---Cc
Q 020104          237 DDVARAHIFLLE-----YPDA-KGRYICS-SHTLTIQEMAEFLSAKYPE-YP----IPTVD-------------S---LA  288 (331)
Q Consensus       237 ~D~a~~~~~~~~-----~~~~-~~~~~~~-~~~~s~~e~~~~i~~~~~~-~~----~~~~~-------------~---~~  288 (331)
                      +.++.+.+.+..     .+.. |..|+++ +.++...++...+.+.+|. .+    +|.+.             .   ..
T Consensus       221 ~Nva~ahilA~~aL~~~~~~~~Gq~yfI~d~~p~~~~~~~~~l~~~lg~~~~~~~~~p~~l~~~~~~l~e~~~~~l~p~~  300 (361)
T KOG1430|consen  221 ENVAWAHILAARALLDKSPSVNGQFYFITDDTPVRFFDFLSPLVKALGYCLPSSIKLPLFLSYFLAYLLEIVYFLLRPYQ  300 (361)
T ss_pred             chhHHHHHHHHHHHHhcCCccCceEEEEeCCCcchhhHHHHHHHHhcCCCCCceeecchHHHHHHHHHHHHHHHhccCCC
Confidence            999988887654     2333 4467765 5677777777788887771 11    12110             0   00


Q ss_pred             cc-------cCCcCcccCcHHH-HHcCCccccChhhhHHHHHHHHHHc
Q 020104          289 EI-------EGYRAPGSSSKKL-LDAGFRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       289 ~~-------~~~~~~~~~~~k~-~~lg~~~~~~~~e~i~~~~~~~~~~  328 (331)
                      ..       .......++++|+ +.|||.|..+++|++.+++.|+...
T Consensus       301 p~lt~~~v~~~~~~~~f~~~kA~~~lgY~P~~~~~e~~~~~~~~~~~~  348 (361)
T KOG1430|consen  301 PILTRFRVALLGVTRTFSIEKAKRELGYKPLVSLEEAIQRTIHWVASE  348 (361)
T ss_pred             CCcChhheeeeccccccCHHHHHHhhCCCCcCCHHHHHHHHHHHHhhh
Confidence            00       1113577899999 9999999999999999999987543

>PRK05865 hypothetical protein; Provisional

Probab=100.00  E-value=3.4e-33  Score=264.78  Aligned_cols=249  Identities=21%  Similarity=0.259  Sum_probs=188.0

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCccE
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTG   85 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~   85 (331)
                      |+|+|||||||||++++++|+++|++|++++|+..     .  ..         ..+++++.+|+.|.+++.++++++|+
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~-----~--~~---------~~~v~~v~gDL~D~~~l~~al~~vD~   64 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRP-----D--SW---------PSSADFIAADIRDATAVESAMTGADV   64 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCch-----h--hc---------ccCceEEEeeCCCHHHHHHHHhCCCE
Confidence            47999999999999999999999999999999751     1  00         13578899999999999999999999


Q ss_pred             EEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCCCC
Q 020104           86 VLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWG  165 (331)
Q Consensus        86 Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~  165 (331)
                      |||+|+...        ..+++|+.++.+++++|++.+ +++|||+||..                              
T Consensus        65 VVHlAa~~~--------~~~~vNv~GT~nLLeAa~~~g-vkr~V~iSS~~------------------------------  105 (854)
T PRK05865         65 VAHCAWVRG--------RNDHINIDGTANVLKAMAETG-TGRIVFTSSGH------------------------------  105 (854)
T ss_pred             EEECCCccc--------chHHHHHHHHHHHHHHHHHcC-CCeEEEECCcH------------------------------
Confidence            999997532        246899999999999999998 89999999831                              


Q ss_pred             chhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccC--CC-ccceeHHHHHHH
Q 020104          166 KSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFL--LN-TSMVHVDDVARA  242 (331)
Q Consensus       166 ~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~i~v~D~a~~  242 (331)
                            |..+|+++..    ++++++++||+++|||+..    ..    ....... ..++.+  .. ++|+|++|+|++
T Consensus       106 ------K~aaE~ll~~----~gl~~vILRp~~VYGP~~~----~~----i~~ll~~-~v~~~G~~~~~~dfIhVdDVA~A  166 (854)
T PRK05865        106 ------QPRVEQMLAD----CGLEWVAVRCALIFGRNVD----NW----VQRLFAL-PVLPAGYADRVVQVVHSDDAQRL  166 (854)
T ss_pred             ------HHHHHHHHHH----cCCCEEEEEeceEeCCChH----HH----HHHHhcC-ceeccCCCCceEeeeeHHHHHHH
Confidence                  7778887743    6899999999999999621    11    1111111 122222  22 589999999999


Q ss_pred             HHHhhcCCC-CCceEEEe-ccccCHHHHHHHHHhhCCCCCCCCccCCccc----cCCcCcccCcHHH-HHcCCccccChh
Q 020104          243 HIFLLEYPD-AKGRYICS-SHTLTIQEMAEFLSAKYPEYPIPTVDSLAEI----EGYRAPGSSSKKL-LDAGFRYNYGID  315 (331)
Q Consensus       243 ~~~~~~~~~-~~~~~~~~-~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~k~-~~lg~~~~~~~~  315 (331)
                      +..++.++. .+++||++ ++.+|++|+++.+.+.......+........    .......+|++|+ +.|||+|+++++
T Consensus       167 i~~aL~~~~~~ggvyNIgsg~~~Si~EIae~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~D~sKar~~LGw~P~~sLe  246 (854)
T PRK05865        167 LVRALLDTVIDSGPVNLAAPGELTFRRIAAALGRPMVPIGSPVLRRVTSFAELELLHSAPLMDVTLLRDRWGFQPAWNAE  246 (854)
T ss_pred             HHHHHhCCCcCCCeEEEECCCcccHHHHHHHHhhhhccCCchhhhhccchhhhhcccCCccCCHHHHHHHhCCCCCCCHH
Confidence            999986543 46789965 5789999999999874321111110011100    1112446899999 889999999999


Q ss_pred             hhHHHHHHHHHHc
Q 020104          316 EMFDEAIQCCKEK  328 (331)
Q Consensus       316 e~i~~~~~~~~~~  328 (331)
                      ++|+++++||+.+
T Consensus       247 eGL~dti~~~r~r  259 (854)
T PRK05865        247 ECLEDFTLAVRGR  259 (854)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999999764

>CHL00194 ycf39 Ycf39; Provisional

Probab=100.00  E-value=1.6e-33  Score=246.19  Aligned_cols=268  Identities=17%  Similarity=0.159  Sum_probs=193.5

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCccE
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTG   85 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~   85 (331)
                      |+|+|||||||+|++++++|+++||+|++++|+.     +....+.        ..+++++.+|+.|++++.++++++|+
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~-----~~~~~l~--------~~~v~~v~~Dl~d~~~l~~al~g~d~   67 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNL-----RKASFLK--------EWGAELVYGDLSLPETLPPSFKGVTA   67 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcCh-----HHhhhHh--------hcCCEEEECCCCCHHHHHHHHCCCCE
Confidence            4899999999999999999999999999999986     2211111        13689999999999999999999999


Q ss_pred             EEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCCCC
Q 020104           86 VLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWG  165 (331)
Q Consensus        86 Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~  165 (331)
                      |||+++...   .++. ...++|+.++.+++++|++.+ ++||||+||.++..                        .+.
T Consensus        68 Vi~~~~~~~---~~~~-~~~~~~~~~~~~l~~aa~~~g-vkr~I~~Ss~~~~~------------------------~~~  118 (317)
T CHL00194         68 IIDASTSRP---SDLY-NAKQIDWDGKLALIEAAKAAK-IKRFIFFSILNAEQ------------------------YPY  118 (317)
T ss_pred             EEECCCCCC---CCcc-chhhhhHHHHHHHHHHHHHcC-CCEEEEeccccccc------------------------cCC
Confidence            999986432   2333 677899999999999999999 99999999954321                        012


Q ss_pred             chhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCC-CccceeHHHHHHHHH
Q 020104          166 KSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLL-NTSMVHVDDVARAHI  244 (331)
Q Consensus       166 ~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~D~a~~~~  244 (331)
                      ++|..+|..+|+.++.    ++++++++||+.+|+.....    .   ....+.+.+..+..+. .++|+|++|+|++++
T Consensus       119 ~~~~~~K~~~e~~l~~----~~l~~tilRp~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~  187 (317)
T CHL00194        119 IPLMKLKSDIEQKLKK----SGIPYTIFRLAGFFQGLISQ----Y---AIPILEKQPIWITNESTPISYIDTQDAAKFCL  187 (317)
T ss_pred             ChHHHHHHHHHHHHHH----cCCCeEEEeecHHhhhhhhh----h---hhhhccCCceEecCCCCccCccCHHHHHHHHH
Confidence            3588999999988754    68999999999888642110    0   1111223332222222 379999999999999


Q ss_pred             HhhcCCC-CCceEEEe-ccccCHHHHHHHHHhhCCCC----CCCCcc---------CCcc---c---------cCC-cCc
Q 020104          245 FLLEYPD-AKGRYICS-SHTLTIQEMAEFLSAKYPEY----PIPTVD---------SLAE---I---------EGY-RAP  296 (331)
Q Consensus       245 ~~~~~~~-~~~~~~~~-~~~~s~~e~~~~i~~~~~~~----~~~~~~---------~~~~---~---------~~~-~~~  296 (331)
                      .++.++. .+++||++ ++.+|++|+++.+.+..|..    .+|.+.         .+..   .         ... ...
T Consensus       188 ~~l~~~~~~~~~~ni~g~~~~s~~el~~~~~~~~g~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  267 (317)
T CHL00194        188 KSLSLPETKNKTFPLVGPKSWNSSEIISLCEQLSGQKAKISRVPLFLLKLLRQITGFFEWTWNISDRLAFVEILNTSNNF  267 (317)
T ss_pred             HHhcCccccCcEEEecCCCccCHHHHHHHHHHHhCCCCeEEeCCHHHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCc
Confidence            9998654 46789975 57899999999999977721    222210         0000   0         001 233


Q ss_pred             ccCcHHH-HHcCCccc--cChhhhHHHHHHHHH
Q 020104          297 GSSSKKL-LDAGFRYN--YGIDEMFDEAIQCCK  326 (331)
Q Consensus       297 ~~~~~k~-~~lg~~~~--~~~~e~i~~~~~~~~  326 (331)
                      ..+.+++ +.||+.|.  .++++.++++++..+
T Consensus       268 ~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~  300 (317)
T CHL00194        268 SSSMAELYKIFKIDPNELISLEDYFQEYFERIL  300 (317)
T ss_pred             CCCHHHHHHHhCCChhhhhhHHHHHHHHHHHHH
Confidence            3467778 88999984  489999988876543

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=100.00  E-value=5.3e-33  Score=240.86  Aligned_cols=273  Identities=23%  Similarity=0.275  Sum_probs=187.1

Q ss_pred             EEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCccEEE
Q 020104            8 VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTGVL   87 (331)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi   87 (331)
                      |||||||||||+++++.|+++|++|++++|+..     .......        ..+    .|+.. ..+...+.++|+||
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-----~~~~~~~--------~~~----~~~~~-~~~~~~~~~~D~Vv   62 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPP-----AGANTKW--------EGY----KPWAP-LAESEALEGADAVI   62 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCC-----CCCcccc--------eee----ecccc-cchhhhcCCCCEEE
Confidence            699999999999999999999999999999872     2111100        011    12222 44556678999999


Q ss_pred             EecccCCCC---CCChhhHHHHHHHHHHHHHHHHHHhcCCcc--EEEEecccceeecCCCCCCcccCCCCCChhhhhhcC
Q 020104           88 HVATPVDFE---DKEPEEVITQRAINGTLGILKSCLKSGTVK--RVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLD  162 (331)
Q Consensus        88 h~a~~~~~~---~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~  162 (331)
                      |+|+.....   ..+.....+++|+.++.+++++|++.+ ++  +||+.||.++|+  .....+++|+++         .
T Consensus        63 h~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~~~~~~i~~S~~~~yg--~~~~~~~~E~~~---------~  130 (292)
T TIGR01777        63 NLAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAAE-QKPKVFISASAVGYYG--TSEDRVFTEEDS---------P  130 (292)
T ss_pred             ECCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhcC-CCceEEEEeeeEEEeC--CCCCCCcCcccC---------C
Confidence            999864321   112223678899999999999999987 53  566666666664  334457778763         1


Q ss_pred             CCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHh-CCCcccccCCC-ccceeHHHHH
Q 020104          163 SWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALIL-GNREEYGFLLN-TSMVHVDDVA  240 (331)
Q Consensus       163 ~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~i~v~D~a  240 (331)
                      .+.+.|+..+...|..+..+ .+.+++++++||+.+|||+..     .......... .....++.+.. ++++|++|+|
T Consensus       131 ~~~~~~~~~~~~~e~~~~~~-~~~~~~~~ilR~~~v~G~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~i~v~Dva  204 (292)
T TIGR01777       131 AGDDFLAELCRDWEEAAQAA-EDLGTRVVLLRTGIVLGPKGG-----ALAKMLPPFRLGLGGPLGSGRQWFSWIHIEDLV  204 (292)
T ss_pred             CCCChHHHHHHHHHHHhhhc-hhcCCceEEEeeeeEECCCcc-----hhHHHHHHHhcCcccccCCCCcccccEeHHHHH
Confidence            23345666676777766544 346899999999999999632     1111111111 11122343333 7999999999


Q ss_pred             HHHHHhhcCCCCCceEEE-eccccCHHHHHHHHHhhCCC---CCCCCccCCccc-------cCCcCcccCcHHHHHcCCc
Q 020104          241 RAHIFLLEYPDAKGRYIC-SSHTLTIQEMAEFLSAKYPE---YPIPTVDSLAEI-------EGYRAPGSSSKKLLDAGFR  309 (331)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~-~~~~~s~~e~~~~i~~~~~~---~~~~~~~~~~~~-------~~~~~~~~~~~k~~~lg~~  309 (331)
                      +++..+++++...++||+ +++.+|+.|+++.+.+.++.   ..+|.  +....       ........+++|++.+||+
T Consensus       205 ~~i~~~l~~~~~~g~~~~~~~~~~s~~di~~~i~~~~g~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  282 (292)
T TIGR01777       205 QLILFALENASISGPVNATAPEPVRNKEFAKALARALHRPAFFPVPA--FVLRALLGEMADLLLKGQRVLPEKLLEAGFQ  282 (292)
T ss_pred             HHHHHHhcCcccCCceEecCCCccCHHHHHHHHHHHhCCCCcCcCCH--HHHHHHhchhhHHHhCCcccccHHHHhcCCe
Confidence            999999988767789987 45789999999999998872   22222  11110       1124667889999889999


Q ss_pred             ccc-ChhhhH
Q 020104          310 YNY-GIDEMF  318 (331)
Q Consensus       310 ~~~-~~~e~i  318 (331)
                      |++ +++|++
T Consensus       283 ~~~~~~~~~~  292 (292)
T TIGR01777       283 FQYPDLDEAL  292 (292)
T ss_pred             eeCcChhhcC
Confidence            999 588863

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PLN02996 fatty acyl-CoA reductase

Probab=100.00  E-value=1.3e-32  Score=251.60  Aligned_cols=272  Identities=19%  Similarity=0.239  Sum_probs=186.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCC---CeEEEEecCCCCcccCCccccc-cc---------c-CCCC-----CCCcEE
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHG---YSVTTTVRSELDPEHRNSKDLS-FL---------K-NLPG-----ASERLR   64 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~-~~---------~-~~~~-----~~~~~~   64 (331)
                      .+|+|||||||||||++|++.|+..+   .+|++++|....  ....+++. .+         . ..+.     ...+++
T Consensus        10 ~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~--~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~   87 (491)
T PLN02996         10 ENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDA--KSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVT   87 (491)
T ss_pred             CCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCC--CCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEE
Confidence            35789999999999999999999764   368999997721  01111110 00         0 0010     125789


Q ss_pred             EEeCCCCCC-------ccHHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEeccccee
Q 020104           65 IFHADLSHP-------DGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAV  137 (331)
Q Consensus        65 ~~~~D~~~~-------~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~  137 (331)
                      ++.+|+.++       +.+..+++++|+|||+|+.+++. .++. ..+++|+.++.+++++|++.+.+++|||+||.++|
T Consensus        88 ~i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~~~-~~~~-~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST~~vy  165 (491)
T PLN02996         88 PVPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTNFD-ERYD-VALGINTLGALNVLNFAKKCVKVKMLLHVSTAYVC  165 (491)
T ss_pred             EEecccCCcCCCCChHHHHHHHHhCCCEEEECccccCCc-CCHH-HHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeeEEe
Confidence            999999843       34667778999999999987754 3444 88999999999999999987338899999999999


Q ss_pred             ecCCC--CCCcccCCC-C-----CChh---------------------hh---------hh--cCCCCchhHhhHHHHHH
Q 020104          138 FYNDK--DVDMMDETF-W-----SDVD---------------------YI---------RK--LDSWGKSYAISKTLTER  177 (331)
Q Consensus       138 ~~~~~--~~~~~~E~~-~-----~~~~---------------------~~---------~~--~~~~~~~Y~~~K~~~e~  177 (331)
                      +....  .+.++++.. +     .+.+                     ..         .+  +..+.+.|+.||.++|+
T Consensus       166 G~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~Y~~TK~~aE~  245 (491)
T PLN02996        166 GEKSGLILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTYVFTKAMGEM  245 (491)
T ss_pred             cCCCceeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCCCCchHhhHHHHHH
Confidence            63211  122222111 0     0000                     00         01  23355789999999999


Q ss_pred             HHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHH------HH-HHHhCCC-cccccCCC-ccceeHHHHHHHHHHhhc
Q 020104          178 AALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRS------SL-ALILGNR-EEYGFLLN-TSMVHVDDVARAHIFLLE  248 (331)
Q Consensus       178 ~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~------~~-~~~~~~~-~~~~~~~~-~~~i~v~D~a~~~~~~~~  248 (331)
                      ++..++  .+++++++||++|||++..+ .+.++..      +. ....|.. ..++++.. ++++||+|+|++++.++.
T Consensus       246 lv~~~~--~~lpv~i~RP~~V~G~~~~p-~~gwi~~~~~~~~i~~~~~~g~~~~~~gdg~~~~D~v~Vddvv~a~l~a~~  322 (491)
T PLN02996        246 LLGNFK--ENLPLVIIRPTMITSTYKEP-FPGWIEGLRTIDSVIVGYGKGKLTCFLADPNSVLDVIPADMVVNAMIVAMA  322 (491)
T ss_pred             HHHHhc--CCCCEEEECCCEeccCCcCC-CCCcccchhhHHHHHHHhccceEeEEecCCCeecceecccHHHHHHHHHHH
Confidence            998875  38999999999999998655 3333221      11 1122333 23444444 899999999999999987


Q ss_pred             CC----CCCceEEEe-c--cccCHHHHHHHHHhhCCCCCCC
Q 020104          249 YP----DAKGRYICS-S--HTLTIQEMAEFLSAKYPEYPIP  282 (331)
Q Consensus       249 ~~----~~~~~~~~~-~--~~~s~~e~~~~i~~~~~~~~~~  282 (331)
                      +.    ..+.+||++ +  .++|+.|+++.+.+.++..+..
T Consensus       323 ~~~~~~~~~~vYNi~s~~~~~~s~~ei~~~~~~~~~~~p~~  363 (491)
T PLN02996        323 AHAGGQGSEIIYHVGSSLKNPVKFSNLHDFAYRYFSKNPWI  363 (491)
T ss_pred             HhhccCCCCcEEEecCCCCCcccHHHHHHHHHHHhhhCCCc
Confidence            53    234689975 4  5799999999999977755543

>PLN02778 3,5-epimerase/4-reductase

Probab=100.00  E-value=1.4e-31  Score=231.20  Aligned_cols=268  Identities=14%  Similarity=0.114  Sum_probs=185.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      +.|+|||||||||||++|+++|+++|++|+...+                               |+.|.+.+...++  
T Consensus         8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~~-------------------------------~~~~~~~v~~~l~~~   56 (298)
T PLN02778          8 ATLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGSG-------------------------------RLENRASLEADIDAV   56 (298)
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCCEEEEecC-------------------------------ccCCHHHHHHHHHhc
Confidence            3578999999999999999999999999875322                               2223344555554  


Q ss_pred             CccEEEEecccCCC-----CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCC----CCcccCCCC
Q 020104           82 GCTGVLHVATPVDF-----EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKD----VDMMDETFW  152 (331)
Q Consensus        82 ~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~----~~~~~E~~~  152 (331)
                      ++|+|||+||....     ...++. +.+++|+.++.+|+++|++.+ ++ ++++||.++|++....    ..+++|+++
T Consensus        57 ~~D~ViH~Aa~~~~~~~~~~~~~p~-~~~~~Nv~gt~~ll~aa~~~g-v~-~v~~sS~~vy~~~~~~p~~~~~~~~Ee~~  133 (298)
T PLN02778         57 KPTHVFNAAGVTGRPNVDWCESHKV-ETIRANVVGTLTLADVCRERG-LV-LTNYATGCIFEYDDAHPLGSGIGFKEEDT  133 (298)
T ss_pred             CCCEEEECCcccCCCCchhhhhCHH-HHHHHHHHHHHHHHHHHHHhC-CC-EEEEecceEeCCCCCCCcccCCCCCcCCC
Confidence            68999999997642     223555 899999999999999999998 74 6777888888654311    234677663


Q ss_pred             CChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCcc
Q 020104          153 SDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTS  232 (331)
Q Consensus       153 ~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (331)
                              +.+|.++|+.+|+++|.++..+.     +..++|+...+|++...  ...+  +...+.+..... .+  .+
T Consensus       134 --------p~~~~s~Yg~sK~~~E~~~~~y~-----~~~~lr~~~~~~~~~~~--~~~f--i~~~~~~~~~~~-~~--~s  193 (298)
T PLN02778        134 --------PNFTGSFYSKTKAMVEELLKNYE-----NVCTLRVRMPISSDLSN--PRNF--ITKITRYEKVVN-IP--NS  193 (298)
T ss_pred             --------CCCCCCchHHHHHHHHHHHHHhh-----ccEEeeecccCCccccc--HHHH--HHHHHcCCCeeE-cC--CC
Confidence                    13345789999999999999875     35688888777764221  1111  223333333211 11  37


Q ss_pred             ceeHHHHHHHHHHhhcCCCCCceEEE-eccccCHHHHHHHHHhhCCC----CCCCCccCCc-cccCCcCcccCcHHH-HH
Q 020104          233 MVHVDDVARAHIFLLEYPDAKGRYIC-SSHTLTIQEMAEFLSAKYPE----YPIPTVDSLA-EIEGYRAPGSSSKKL-LD  305 (331)
Q Consensus       233 ~i~v~D~a~~~~~~~~~~~~~~~~~~-~~~~~s~~e~~~~i~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~k~-~~  305 (331)
                      |+|++|++++++.++.+.. +|+||+ +++.+|++|+++.+++.++.    ..+.....-. .........+|++|+ +.
T Consensus       194 ~~yv~D~v~al~~~l~~~~-~g~yNigs~~~iS~~el~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~Ld~~k~~~~  272 (298)
T PLN02778        194 MTILDELLPISIEMAKRNL-TGIYNFTNPGVVSHNEILEMYRDYIDPSFTWKNFTLEEQAKVIVAPRSNNELDTTKLKRE  272 (298)
T ss_pred             CEEHHHHHHHHHHHHhCCC-CCeEEeCCCCcccHHHHHHHHHHHhCCCceeccccHHHHHHHHhCCCccccccHHHHHHh
Confidence            9999999999999987654 579997 56789999999999998873    1111100000 001122347999999 77


Q ss_pred             cCCccccChhhhHHHHHHHHHH
Q 020104          306 AGFRYNYGIDEMFDEAIQCCKE  327 (331)
Q Consensus       306 lg~~~~~~~~e~i~~~~~~~~~  327 (331)
                      ++=.+. ..+++++..++-++.
T Consensus       273 ~~~~~~-~~~~~~~~~~~~~~~  293 (298)
T PLN02778        273 FPELLP-IKESLIKYVFEPNKK  293 (298)
T ss_pred             cccccc-hHHHHHHHHHHHHHh
Confidence            776566 778888888876643

>PRK07201 short chain dehydrogenase; Provisional

Probab=100.00  E-value=3.8e-31  Score=253.65  Aligned_cols=299  Identities=20%  Similarity=0.187  Sum_probs=206.8

Q ss_pred             ceEEEecCcchhHHHHHHHHH--HCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCc------cHH
Q 020104            6 GRVCVTGGTGFIASWLIMRLL--DHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPD------GFD   77 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~--~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------~~~   77 (331)
                      |+|||||||||||++|+++|+  +.|++|++++|+.      ....+..+.... ...+++++.+|+.|++      .+.
T Consensus         1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~------~~~~~~~~~~~~-~~~~v~~~~~Dl~~~~~~~~~~~~~   73 (657)
T PRK07201          1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQ------SLSRLEALAAYW-GADRVVPLVGDLTEPGLGLSEADIA   73 (657)
T ss_pred             CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcc------hHHHHHHHHHhc-CCCcEEEEecccCCccCCcCHHHHH
Confidence            489999999999999999999  4789999999965      112222211100 1146899999999853      344


Q ss_pred             HHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhh
Q 020104           78 AAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDY  157 (331)
Q Consensus        78 ~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~  157 (331)
                      ++ .++|+|||||+..+... +.. ...++|+.++.+++++|++.+ +++|||+||..+|+..   ..+.+|+++.    
T Consensus        74 ~l-~~~D~Vih~Aa~~~~~~-~~~-~~~~~nv~gt~~ll~~a~~~~-~~~~v~~SS~~v~g~~---~~~~~e~~~~----  142 (657)
T PRK07201         74 EL-GDIDHVVHLAAIYDLTA-DEE-AQRAANVDGTRNVVELAERLQ-AATFHHVSSIAVAGDY---EGVFREDDFD----  142 (657)
T ss_pred             Hh-cCCCEEEECceeecCCC-CHH-HHHHHHhHHHHHHHHHHHhcC-CCeEEEEeccccccCc---cCccccccch----
Confidence            44 88999999999765432 333 788999999999999999998 8999999999998522   2344555421    


Q ss_pred             hhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCc-----cHHHHHHHHhCCCc---ccccC-
Q 020104          158 IRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAG-----SVRSSLALILGNRE---EYGFL-  228 (331)
Q Consensus       158 ~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~-----~~~~~~~~~~~~~~---~~~~~-  228 (331)
                        ....+.++|+.+|..+|++++.   ..+++++++||+.+||+...+....     .+...+..+...+.   ....+ 
T Consensus       143 --~~~~~~~~Y~~sK~~~E~~~~~---~~g~~~~ilRp~~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (657)
T PRK07201        143 --EGQGLPTPYHRTKFEAEKLVRE---ECGLPWRVYRPAVVVGDSRTGEMDKIDGPYYFFKVLAKLAKLPSWLPMVGPDG  217 (657)
T ss_pred             --hhcCCCCchHHHHHHHHHHHHH---cCCCcEEEEcCCeeeecCCCCccccCCcHHHHHHHHHHhccCCcccccccCCC
Confidence              1123356799999999999875   2589999999999999875432211     11111222211111   11222 


Q ss_pred             CCccceeHHHHHHHHHHhhcCCCC-CceEEEe-ccccCHHHHHHHHHhhCCCCC-------CCCcc--CCcc--------
Q 020104          229 LNTSMVHVDDVARAHIFLLEYPDA-KGRYICS-SHTLTIQEMAEFLSAKYPEYP-------IPTVD--SLAE--------  289 (331)
Q Consensus       229 ~~~~~i~v~D~a~~~~~~~~~~~~-~~~~~~~-~~~~s~~e~~~~i~~~~~~~~-------~~~~~--~~~~--------  289 (331)
                      +..+++|++|+++++..++..+.. +++||++ ++++|++|+++.+.+.++...       +|...  ....        
T Consensus       218 ~~~~~v~vddva~ai~~~~~~~~~~g~~~ni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  297 (657)
T PRK07201        218 GRTNIVPVDYVADALDHLMHKDGRDGQTFHLTDPKPQRVGDIYNAFARAAGAPPDARLFGFLPGFVAAPLLAALGPVRRL  297 (657)
T ss_pred             CeeeeeeHHHHHHHHHHHhcCcCCCCCEEEeCCCCCCcHHHHHHHHHHHhCCCccccccccCChHHHHHHhhhcchhhHH
Confidence            236899999999999999876544 5689975 578999999999999887322       22110  0000        


Q ss_pred             -------c--------cCCcCcccCcHHH-HHc---CCccccChhhhHHHHHHHHHHc
Q 020104          290 -------I--------EGYRAPGSSSKKL-LDA---GFRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       290 -------~--------~~~~~~~~~~~k~-~~l---g~~~~~~~~e~i~~~~~~~~~~  328 (331)
                             .        .......+|++++ +.|   |+.+. .+.+.+...++|+.++
T Consensus       298 ~~~~~~~~~~~~~~l~~~~~~~~f~~~~~~~~L~~~~~~~p-~~~~~~~~~~~~~~~~  354 (657)
T PRK07201        298 RNAVATQLGIPPEVLDFVNYPTTFDSRETRAALKGSGIEVP-RLASYAPRLWDYWERH  354 (657)
T ss_pred             HHHHHHhcCCCHHHHHhccCCCeeccHHHHHHhccCCcCCC-ChHHHHHHHHHHHHhc
Confidence                   0        0113457889999 777   66666 8889999999877654

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=99.98  E-value=1.3e-30  Score=210.35  Aligned_cols=277  Identities=25%  Similarity=0.302  Sum_probs=194.3

Q ss_pred             EEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc-CccEE
Q 020104            8 VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA-GCTGV   86 (331)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-~~d~V   86 (331)
                      |+|||||||||++|+..|.+.||+|++++|+++     .......        ..+.       ..+.+.+... ++|+|
T Consensus         1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~-----~~~~~~~--------~~v~-------~~~~~~~~~~~~~Dav   60 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPP-----KASQNLH--------PNVT-------LWEGLADALTLGIDAV   60 (297)
T ss_pred             CeEeccccchhHHHHHHHHhCCCeEEEEEcCCc-----chhhhcC--------cccc-------ccchhhhcccCCCCEE
Confidence            689999999999999999999999999999983     2111100        1111       2233444444 79999


Q ss_pred             EEecccCC---CCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCC
Q 020104           87 LHVATPVD---FEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDS  163 (331)
Q Consensus        87 ih~a~~~~---~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~  163 (331)
                      ||+||..-   .+..+.++.+.+.-+..|+.|.++..+.. .+.=+++|.+.+-+|++..+..++|+++...+++     
T Consensus        61 INLAG~~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~-~~P~~~isaSAvGyYG~~~~~~~tE~~~~g~~Fl-----  134 (297)
T COG1090          61 INLAGEPIAERRWTEKQKEEIRQSRINTTEKLVELIAASE-TKPKVLISASAVGYYGHSGDRVVTEESPPGDDFL-----  134 (297)
T ss_pred             EECCCCccccccCCHHHHHHHHHHHhHHHHHHHHHHHhcc-CCCcEEEecceEEEecCCCceeeecCCCCCCChH-----
Confidence            99998533   24444556889999999999999999765 2333445555555557788899999986555443     


Q ss_pred             CCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHH-HhCCCcccccCCC-ccceeHHHHHH
Q 020104          164 WGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLAL-ILGNREEYGFLLN-TSMVHVDDVAR  241 (331)
Q Consensus       164 ~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~i~v~D~a~  241 (331)
                           +.....=|+..... +..+.+++++|.|.|.|+.-.     .+..+... ..+-+..++++.+ ++|||++|+++
T Consensus       135 -----a~lc~~WE~~a~~a-~~~gtRvvllRtGvVLs~~GG-----aL~~m~~~fk~glGG~~GsGrQ~~SWIhieD~v~  203 (297)
T COG1090         135 -----AQLCQDWEEEALQA-QQLGTRVVLLRTGVVLSPDGG-----ALGKMLPLFKLGLGGKLGSGRQWFSWIHIEDLVN  203 (297)
T ss_pred             -----HHHHHHHHHHHhhh-hhcCceEEEEEEEEEecCCCc-----chhhhcchhhhccCCccCCCCceeeeeeHHHHHH
Confidence                 22222334444433 335899999999999997532     12222211 1244456777777 69999999999


Q ss_pred             HHHHhhcCCCCCceEEE-eccccCHHHHHHHHHhhCC---CCCCCCccCCccc-------cCCcCcccCcHHHHHcCCcc
Q 020104          242 AHIFLLEYPDAKGRYIC-SSHTLTIQEMAEFLSAKYP---EYPIPTVDSLAEI-------EGYRAPGSSSKKLLDAGFRY  310 (331)
Q Consensus       242 ~~~~~~~~~~~~~~~~~-~~~~~s~~e~~~~i~~~~~---~~~~~~~~~~~~~-------~~~~~~~~~~~k~~~lg~~~  310 (331)
                      ++.++++++...|.||+ ++.+++..++.+.+.+...   ..++|.  ...+.       .-.....+-+.|+...||++
T Consensus       204 ~I~fll~~~~lsGp~N~taP~PV~~~~F~~al~r~l~RP~~~~vP~--~~~rl~LGe~a~~lL~gQrvlP~kl~~aGF~F  281 (297)
T COG1090         204 AILFLLENEQLSGPFNLTAPNPVRNKEFAHALGRALHRPAILPVPS--FALRLLLGEMADLLLGGQRVLPKKLEAAGFQF  281 (297)
T ss_pred             HHHHHHhCcCCCCcccccCCCcCcHHHHHHHHHHHhCCCccccCcH--HHHHHHhhhhHHHHhccchhhHHHHHHCCCee
Confidence            99999999999999996 5789999999999999765   334444  22221       11234566677777789999


Q ss_pred             cc-ChhhhHHHHHH
Q 020104          311 NY-GIDEMFDEAIQ  323 (331)
Q Consensus       311 ~~-~~~e~i~~~~~  323 (331)
                      +| ++++++.+.+.
T Consensus       282 ~y~dl~~AL~~il~  295 (297)
T COG1090         282 QYPDLEEALADILK  295 (297)
T ss_pred             ecCCHHHHHHHHHh
Confidence            99 89999998875

>TIGR01746 Thioester-redct thioester reductase domain

Probab=99.97  E-value=7.7e-30  Score=228.10  Aligned_cols=308  Identities=21%  Similarity=0.253  Sum_probs=203.5

Q ss_pred             eEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCcccccccc----C--CC--CC-CCcEEEEeCCCCCC--
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKDLSFLK----N--LP--GA-SERLRIFHADLSHP--   73 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~----~--~~--~~-~~~~~~~~~D~~~~--   73 (331)
                      +|||||||||||++|+++|+++|  ++|++++|+.     ......+.+.    .  +.  .. ..+++++.+|+.++  
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~   75 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAA-----SEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRL   75 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccC-----CHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccC
Confidence            58999999999999999999998  6799999987     2211111110    0  00  00 14789999999765  


Q ss_pred             ----ccHHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccC
Q 020104           74 ----DGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDE  149 (331)
Q Consensus        74 ----~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E  149 (331)
                          +.+..+..++|+|||+|+..+..  .+.....+.|+.++.+++++|.+.+ +++|+|+||.++++...  ..+..|
T Consensus        76 gl~~~~~~~~~~~~d~vih~a~~~~~~--~~~~~~~~~nv~g~~~ll~~a~~~~-~~~~v~iSS~~v~~~~~--~~~~~~  150 (367)
T TIGR01746        76 GLSDAEWERLAENVDTIVHNGALVNWV--YPYSELRAANVLGTREVLRLAASGR-AKPLHYVSTISVLAAID--LSTVTE  150 (367)
T ss_pred             CcCHHHHHHHHhhCCEEEeCCcEeccC--CcHHHHhhhhhHHHHHHHHHHhhCC-CceEEEEccccccCCcC--CCCccc
Confidence                35566667899999999976543  2333778899999999999999988 78899999999986322  122334


Q ss_pred             CCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCC--ccHHHHHHHHhCCCccccc
Q 020104          150 TFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFA--GSVRSSLALILGNREEYGF  227 (331)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~  227 (331)
                      +++..    .....+.+.|+.+|..+|.+++.+... +++++++||+.++|+...+...  ..+........... .++.
T Consensus       151 ~~~~~----~~~~~~~~~Y~~sK~~~E~~~~~~~~~-g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~~~~-~~p~  224 (367)
T TIGR01746       151 DDAIV----TPPPGLAGGYAQSKWVAELLVREASDR-GLPVTIVRPGRILGNSYTGAINSSDILWRMVKGCLALG-AYPD  224 (367)
T ss_pred             ccccc----ccccccCCChHHHHHHHHHHHHHHHhc-CCCEEEECCCceeecCCCCCCCchhHHHHHHHHHHHhC-CCCC
Confidence            43211    011223568999999999999887654 8999999999999984433211  12222222111111 2222


Q ss_pred             CC--CccceeHHHHHHHHHHhhcCCCC---CceEEEe-ccccCHHHHHHHHHhhCC-CC-CCCCccCCc-----------
Q 020104          228 LL--NTSMVHVDDVARAHIFLLEYPDA---KGRYICS-SHTLTIQEMAEFLSAKYP-EY-PIPTVDSLA-----------  288 (331)
Q Consensus       228 ~~--~~~~i~v~D~a~~~~~~~~~~~~---~~~~~~~-~~~~s~~e~~~~i~~~~~-~~-~~~~~~~~~-----------  288 (331)
                      ..  ..+++|++|++++++.++..+..   +++||++ ++++++.|+++.+.+ .+ .. .++...+..           
T Consensus       225 ~~~~~~~~~~vddva~ai~~~~~~~~~~~~~~~~~v~~~~~~s~~e~~~~i~~-~g~~~~~~~~~~w~~~~~~~~~~~~~  303 (367)
T TIGR01746       225 SPELTEDLTPVDYVARAIVALSSQPAASAGGPVFHVVNPEPVSLDEFLEWLER-AGYNLKLVSFDEWLQRLEDSDTAKRD  303 (367)
T ss_pred             CCccccCcccHHHHHHHHHHHHhCCCcccCCceEEecCCCCCCHHHHHHHHHH-cCCCCCcCCHHHHHHHHHHhhhcCCC
Confidence            22  25799999999999999877654   6789975 588999999999988 44 11 111100000           


Q ss_pred             ----c------cc-------CCcCcccCcHHH----HHcCCccccChhhhHHHHHHHHHHcCCC
Q 020104          289 ----E------IE-------GYRAPGSSSKKL----LDAGFRYNYGIDEMFDEAIQCCKEKGYL  331 (331)
Q Consensus       289 ----~------~~-------~~~~~~~~~~k~----~~lg~~~~~~~~e~i~~~~~~~~~~~~~  331 (331)
                          .      ..       ......+++++.    ..++..+..--++.++++++++...|+|
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (367)
T TIGR01746       304 PPRYPLLPLLHFLGAGFEEPEFDTRNLDSRSTAEALEGDGIREPSITAPLLHLYLQYLKEIGFL  367 (367)
T ss_pred             cccccchhhhhccCCCcccccccccccchHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence                0      00       000123445544    3346555534568899999999998875

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=99.97  E-value=3.2e-31  Score=220.65  Aligned_cols=233  Identities=16%  Similarity=0.156  Sum_probs=171.3

Q ss_pred             EEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccCCccccccccCCCCCCCcE----EEEeCCCCCCccHHHHhc-
Q 020104            8 VCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERL----RIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~D~~~~~~~~~~~~-   81 (331)
                      ||||||+|.||+.||++|++.+ .++++++|+.     .....+..-.......+++    .++.+|++|.+.+..+++ 
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E-----~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~   75 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDE-----NKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEE   75 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-H-----HHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT-
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCCh-----hHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhh
Confidence            7999999999999999999987 6899999987     2222222111000011233    456899999999999998 


Q ss_pred             -CccEEEEecccCC--CCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhh
Q 020104           82 -GCTGVLHVATPVD--FEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYI  158 (331)
Q Consensus        82 -~~d~Vih~a~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~  158 (331)
                       ++|+|||+||.-+  ....+|. +.+++|+.||+|++++|.+++ +++||++||..+.                     
T Consensus        76 ~~pdiVfHaAA~KhVpl~E~~p~-eav~tNv~GT~nv~~aa~~~~-v~~~v~ISTDKAv---------------------  132 (293)
T PF02719_consen   76 YKPDIVFHAAALKHVPLMEDNPF-EAVKTNVLGTQNVAEAAIEHG-VERFVFISTDKAV---------------------  132 (293)
T ss_dssp             -T-SEEEE------HHHHCCCHH-HHHHHHCHHHHHHHHHHHHTT--SEEEEEEECGCS---------------------
T ss_pred             cCCCEEEEChhcCCCChHHhCHH-HHHHHHHHHHHHHHHHHHHcC-CCEEEEccccccC---------------------
Confidence             8999999999766  3355676 999999999999999999999 9999999997654                     


Q ss_pred             hhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHh-CCCcccccCCC-ccc
Q 020104          159 RKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALIL-GNREEYGFLLN-TSM  233 (331)
Q Consensus       159 ~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~  233 (331)
                          +|.|.||.||+.+|.++..++...   +.+++++|.|+|.|..     .+.+..+...+. |++..+..... |-|
T Consensus       133 ----~PtnvmGatKrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~-----GSVip~F~~Qi~~g~PlTvT~p~mtRff  203 (293)
T PF02719_consen  133 ----NPTNVMGATKRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGSR-----GSVIPLFKKQIKNGGPLTVTDPDMTRFF  203 (293)
T ss_dssp             ----S--SHHHHHHHHHHHHHHHHCCTSSSS--EEEEEEE-EETTGT-----TSCHHHHHHHHHTTSSEEECETT-EEEE
T ss_pred             ----CCCcHHHHHHHHHHHHHHHHhhhCCCCCcEEEEEEecceecCC-----CcHHHHHHHHHHcCCcceeCCCCcEEEE
Confidence                567899999999999999988755   5799999999999975     346666665554 55555555554 789


Q ss_pred             eeHHHHHHHHHHhhcCCCCCceEEEe-ccccCHHHHHHHHHhhCC
Q 020104          234 VHVDDVARAHIFLLEYPDAKGRYICS-SHTLTIQEMAEFLSAKYP  277 (331)
Q Consensus       234 i~v~D~a~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~i~~~~~  277 (331)
                      +.++++++.++.++.....+++|... |+++++.|+++.+.+..|
T Consensus       204 mti~EAv~Lvl~a~~~~~~geifvl~mg~~v~I~dlA~~~i~~~g  248 (293)
T PF02719_consen  204 MTIEEAVQLVLQAAALAKGGEIFVLDMGEPVKILDLAEAMIELSG  248 (293)
T ss_dssp             E-HHHHHHHHHHHHHH--TTEEEEE---TCEECCCHHHHHHHHTT
T ss_pred             ecHHHHHHHHHHHHhhCCCCcEEEecCCCCcCHHHHHHHHHhhcc
Confidence            99999999999999888778899875 689999999999999887

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.97  E-value=2.9e-29  Score=221.67  Aligned_cols=236  Identities=19%  Similarity=0.195  Sum_probs=193.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccCCcccccc-ccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNSKDLSF-LKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      .+|+||||||+|-||+.+|+++++.+ .++++++|+.     -+...+.. +.+... ..++.++.||+.|.+.+..+++
T Consensus       249 ~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E-----~~~~~i~~el~~~~~-~~~~~~~igdVrD~~~~~~~~~  322 (588)
T COG1086         249 TGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDE-----YKLYLIDMELREKFP-ELKLRFYIGDVRDRDRVERAME  322 (588)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCch-----HHHHHHHHHHHhhCC-CcceEEEecccccHHHHHHHHh
Confidence            46899999999999999999999987 5788888887     22222211 111111 3678899999999999999998


Q ss_pred             C--ccEEEEecccCC--CCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhh
Q 020104           82 G--CTGVLHVATPVD--FEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDY  157 (331)
Q Consensus        82 ~--~d~Vih~a~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~  157 (331)
                      +  +|+|+|+||.-+  ..+.+|. +.+.+|+.||+|++++|.+++ +++||.+||..+.                    
T Consensus       323 ~~kvd~VfHAAA~KHVPl~E~nP~-Eai~tNV~GT~nv~~aa~~~~-V~~~V~iSTDKAV--------------------  380 (588)
T COG1086         323 GHKVDIVFHAAALKHVPLVEYNPE-EAIKTNVLGTENVAEAAIKNG-VKKFVLISTDKAV--------------------  380 (588)
T ss_pred             cCCCceEEEhhhhccCcchhcCHH-HHHHHhhHhHHHHHHHHHHhC-CCEEEEEecCccc--------------------
Confidence            7  999999999766  3355676 999999999999999999999 9999999996654                    


Q ss_pred             hhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHH-hCCCcccccCCC-cc
Q 020104          158 IRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALI-LGNREEYGFLLN-TS  232 (331)
Q Consensus       158 ~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~  232 (331)
                           +|.|.||.+|+.+|..+..+....   +.+++.+|.|+|.|.+     .+.+..+..++ .|.+..+..... |-
T Consensus       381 -----~PtNvmGaTKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSr-----GSViPlFk~QI~~GgplTvTdp~mtRy  450 (588)
T COG1086         381 -----NPTNVMGATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSR-----GSVIPLFKKQIAEGGPLTVTDPDMTRF  450 (588)
T ss_pred             -----CCchHhhHHHHHHHHHHHHHhhccCCCCcEEEEEEecceecCC-----CCCHHHHHHHHHcCCCccccCCCceeE
Confidence                 568899999999999999998744   3899999999999986     34566665544 455555555555 78


Q ss_pred             ceeHHHHHHHHHHhhcCCCCCceEEEe-ccccCHHHHHHHHHhhCC
Q 020104          233 MVHVDDVARAHIFLLEYPDAKGRYICS-SHTLTIQEMAEFLSAKYP  277 (331)
Q Consensus       233 ~i~v~D~a~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~i~~~~~  277 (331)
                      |+.++|.++.++.+......|++|... |+++++.|+++.+.+..|
T Consensus       451 fMTI~EAv~LVlqA~a~~~gGeifvldMGepvkI~dLAk~mi~l~g  496 (588)
T COG1086         451 FMTIPEAVQLVLQAGAIAKGGEIFVLDMGEPVKIIDLAKAMIELAG  496 (588)
T ss_pred             EEEHHHHHHHHHHHHhhcCCCcEEEEcCCCCeEHHHHHHHHHHHhC
Confidence            999999999999999988778899885 799999999999988775

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=99.97  E-value=2.6e-29  Score=224.52  Aligned_cols=229  Identities=14%  Similarity=0.077  Sum_probs=171.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+++|||||||||||++++++|+++|++|++++|+..     .........+.....++++++.+|+.|++++.++++  
T Consensus        59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~-----~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~  133 (390)
T PLN02657         59 KDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKS-----GIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSE  133 (390)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechh-----hccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHh
Confidence            3578999999999999999999999999999999872     111000000000112478999999999999999987  


Q ss_pred             --CccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhh
Q 020104           82 --GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIR  159 (331)
Q Consensus        82 --~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~  159 (331)
                        ++|+||||++....   ... ..+++|+.++.+++++|++.+ +++||++||.+++.                     
T Consensus       134 ~~~~D~Vi~~aa~~~~---~~~-~~~~vn~~~~~~ll~aa~~~g-v~r~V~iSS~~v~~---------------------  187 (390)
T PLN02657        134 GDPVDVVVSCLASRTG---GVK-DSWKIDYQATKNSLDAGREVG-AKHFVLLSAICVQK---------------------  187 (390)
T ss_pred             CCCCcEEEECCccCCC---CCc-cchhhHHHHHHHHHHHHHHcC-CCEEEEEeeccccC---------------------
Confidence              59999999875321   122 567889999999999999998 89999999987651                     


Q ss_pred             hcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc-ccccCCC-c-cceeH
Q 020104          160 KLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE-EYGFLLN-T-SMVHV  236 (331)
Q Consensus       160 ~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~-~~i~v  236 (331)
                          |...|..+|..+|+.+..  ..++++++|+||+.+||+..     ..   +.....+.+. .++++.. + ++||+
T Consensus       188 ----p~~~~~~sK~~~E~~l~~--~~~gl~~tIlRp~~~~~~~~-----~~---~~~~~~g~~~~~~GdG~~~~~~~I~v  253 (390)
T PLN02657        188 ----PLLEFQRAKLKFEAELQA--LDSDFTYSIVRPTAFFKSLG-----GQ---VEIVKDGGPYVMFGDGKLCACKPISE  253 (390)
T ss_pred             ----cchHHHHHHHHHHHHHHh--ccCCCCEEEEccHHHhcccH-----HH---HHhhccCCceEEecCCcccccCceeH
Confidence                133588999999998875  34789999999999997521     11   1112233432 2344433 3 57999


Q ss_pred             HHHHHHHHHhhcCCC-CCceEEEec--cccCHHHHHHHHHhhCC
Q 020104          237 DDVARAHIFLLEYPD-AKGRYICSS--HTLTIQEMAEFLSAKYP  277 (331)
Q Consensus       237 ~D~a~~~~~~~~~~~-~~~~~~~~~--~~~s~~e~~~~i~~~~~  277 (331)
                      +|+|++++.++.++. .+++||+++  +.+|++|+++.+.+.+|
T Consensus       254 ~DlA~~i~~~~~~~~~~~~~~~Iggp~~~~S~~Eia~~l~~~lG  297 (390)
T PLN02657        254 ADLASFIADCVLDESKINKVLPIGGPGKALTPLEQGEMLFRILG  297 (390)
T ss_pred             HHHHHHHHHHHhCccccCCEEEcCCCCcccCHHHHHHHHHHHhC
Confidence            999999999987654 466899764  47999999999999887

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=99.96  E-value=6.7e-28  Score=230.67  Aligned_cols=261  Identities=15%  Similarity=0.122  Sum_probs=184.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      ++||||||||+||||++|+++|.++|++|...                               .+|++|.+.+...+.  
T Consensus       379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~-------------------------------~~~l~d~~~v~~~i~~~  427 (668)
T PLN02260        379 PSLKFLIYGRTGWIGGLLGKLCEKQGIAYEYG-------------------------------KGRLEDRSSLLADIRNV  427 (668)
T ss_pred             CCceEEEECCCchHHHHHHHHHHhCCCeEEee-------------------------------ccccccHHHHHHHHHhh
Confidence            45789999999999999999999999887311                               134667777777775  


Q ss_pred             CccEEEEecccCCC-----CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCC----CCCCcccCCCC
Q 020104           82 GCTGVLHVATPVDF-----EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYND----KDVDMMDETFW  152 (331)
Q Consensus        82 ~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~----~~~~~~~E~~~  152 (331)
                      ++|+|||||+....     ...++. ..+++|+.++.+|+++|++.+ + ++|++||.++|+++.    ....+++|+++
T Consensus       428 ~pd~Vih~Aa~~~~~~~~~~~~~~~-~~~~~N~~gt~~l~~a~~~~g-~-~~v~~Ss~~v~~~~~~~~~~~~~p~~E~~~  504 (668)
T PLN02260        428 KPTHVFNAAGVTGRPNVDWCESHKV-ETIRANVVGTLTLADVCRENG-L-LMMNFATGCIFEYDAKHPEGSGIGFKEEDK  504 (668)
T ss_pred             CCCEEEECCcccCCCCCChHHhCHH-HHHHHHhHHHHHHHHHHHHcC-C-eEEEEcccceecCCcccccccCCCCCcCCC
Confidence            79999999997631     123555 889999999999999999998 6 578889999986532    12346777763


Q ss_pred             CChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCcc
Q 020104          153 SDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTS  232 (331)
Q Consensus       153 ~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (331)
                              +.++.++||.+|+++|++++.+.     +..++|+..+||.+...  ...+.  ...+.... .+..+  ..
T Consensus       505 --------~~~~~~~Yg~sK~~~E~~~~~~~-----~~~~~r~~~~~~~~~~~--~~nfv--~~~~~~~~-~~~vp--~~  564 (668)
T PLN02260        505 --------PNFTGSFYSKTKAMVEELLREYD-----NVCTLRVRMPISSDLSN--PRNFI--TKISRYNK-VVNIP--NS  564 (668)
T ss_pred             --------CCCCCChhhHHHHHHHHHHHhhh-----hheEEEEEEecccCCCC--ccHHH--HHHhccce-eeccC--CC
Confidence                    12345889999999999998863     46778888888654221  11111  11112221 11111  25


Q ss_pred             ceeHHHHHHHHHHhhcCCCCCceEEEe-ccccCHHHHHHHHHhhCC-C---CCCCCccCCc--cc-cCCcCcccCcHHH-
Q 020104          233 MVHVDDVARAHIFLLEYPDAKGRYICS-SHTLTIQEMAEFLSAKYP-E---YPIPTVDSLA--EI-EGYRAPGSSSKKL-  303 (331)
Q Consensus       233 ~i~v~D~a~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~i~~~~~-~---~~~~~~~~~~--~~-~~~~~~~~~~~k~-  303 (331)
                      ..+++|++.+++.+++. ..+|+||++ ++.+|+.|+++.+.+..+ .   .++... ++.  .. ..+.. .+|++|+ 
T Consensus       565 ~~~~~~~~~~~~~l~~~-~~~giyni~~~~~~s~~e~a~~i~~~~~~~~~~~~~~~~-~~~~~~~a~rp~~-~l~~~k~~  641 (668)
T PLN02260        565 MTVLDELLPISIEMAKR-NLRGIWNFTNPGVVSHNEILEMYKDYIDPGFKWSNFTLE-EQAKVIVAPRSNN-EMDASKLK  641 (668)
T ss_pred             ceehhhHHHHHHHHHHh-CCCceEEecCCCcCcHHHHHHHHHHhcCCcccccccCHH-HhhhHhhCCCccc-cccHHHHH
Confidence            78889999998888874 346899975 567999999999998764 2   122211 222  11 23344 7999999 


Q ss_pred             HHcCCccccChhhhHHHHHH
Q 020104          304 LDAGFRYNYGIDEMFDEAIQ  323 (331)
Q Consensus       304 ~~lg~~~~~~~~e~i~~~~~  323 (331)
                      ..+|+ +. +|+|++.+++.
T Consensus       642 ~~~~~-~~-~~~~~l~~~~~  659 (668)
T PLN02260        642 KEFPE-LL-SIKESLIKYVF  659 (668)
T ss_pred             HhCcc-cc-chHHHHHHHHh
Confidence            66888 66 99999999875

>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila

Probab=99.96  E-value=1.1e-28  Score=208.13  Aligned_cols=223  Identities=26%  Similarity=0.353  Sum_probs=129.2

Q ss_pred             EecCcchhHHHHHHHHHHCCC--eEEEEecCCCCcccCCccccccc----cCCC-------CCCCcEEEEeCCCCCC---
Q 020104           10 VTGGTGFIASWLIMRLLDHGY--SVTTTVRSELDPEHRNSKDLSFL----KNLP-------GASERLRIFHADLSHP---   73 (331)
Q Consensus        10 VtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~----~~~~-------~~~~~~~~~~~D~~~~---   73 (331)
                      |||||||||++|+++|++.+.  +|++++|..     ......+.+    .+..       ....+++++.||+.++   
T Consensus         1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~-----~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lG   75 (249)
T PF07993_consen    1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRAS-----SSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLG   75 (249)
T ss_dssp             EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SS-----SHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG
T ss_pred             CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCc-----ccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccC
Confidence            799999999999999999876  899999987     222222222    1110       0147999999999986   


Q ss_pred             ---ccHHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCC
Q 020104           74 ---DGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDET  150 (331)
Q Consensus        74 ---~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~  150 (331)
                         +++..+.+++|+||||||.+++..  +..+..+.|+.|++++++.|.+.. .++|+|+||..+.+..   .....|+
T Consensus        76 L~~~~~~~L~~~v~~IiH~Aa~v~~~~--~~~~~~~~NV~gt~~ll~la~~~~-~~~~~~iSTa~v~~~~---~~~~~~~  149 (249)
T PF07993_consen   76 LSDEDYQELAEEVDVIIHCAASVNFNA--PYSELRAVNVDGTRNLLRLAAQGK-RKRFHYISTAYVAGSR---PGTIEEK  149 (249)
T ss_dssp             --HHHHHHHHHH--EEEE--SS-SBS---S--EEHHHHHHHHHHHHHHHTSSS----EEEEEEGGGTTS----TTT--SS
T ss_pred             CChHHhhccccccceeeecchhhhhcc--cchhhhhhHHHHHHHHHHHHHhcc-CcceEEeccccccCCC---CCccccc
Confidence               356667789999999999988653  333788999999999999999877 5699999994443211   1112111


Q ss_pred             CC-CChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCC--ccHHHHH-HHH-hCCCc-c
Q 020104          151 FW-SDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFA--GSVRSSL-ALI-LGNRE-E  224 (331)
Q Consensus       151 ~~-~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~--~~~~~~~-~~~-~~~~~-~  224 (331)
                      .. ...........+.++|..||..+|+++++++++.+++++|+||+.|+|....+...  ......+ ... .+.-+ .
T Consensus       150 ~~~~~~~~~~~~~~~~~gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g~~~~G~~~~~~~~~~~~~~~~~~~~~p~~  229 (249)
T PF07993_consen  150 VYPEEEDDLDPPQGFPNGYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVGDSRTGWWNSDDFFPYLLRSCIALGAFPDL  229 (249)
T ss_dssp             S-HHH--EEE--TTSEE-HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-SSSSS---TTBHHHHHHHHHHHH-EEES-
T ss_pred             ccccccccchhhccCCccHHHHHHHHHHHHHHHHhcCCceEEEEecCcccccCCCceeeccchHHHHHHHHHHcCCcccc
Confidence            00 00001112235567999999999999999998889999999999999954443221  2122222 222 22222 2


Q ss_pred             cccCC-CccceeHHHHHHHH
Q 020104          225 YGFLL-NTSMVHVDDVARAH  243 (331)
Q Consensus       225 ~~~~~-~~~~i~v~D~a~~~  243 (331)
                      .+... ..++++||.+|++|
T Consensus       230 ~~~~~~~~d~vPVD~va~aI  249 (249)
T PF07993_consen  230 PGDPDARLDLVPVDYVARAI  249 (249)
T ss_dssp             SB---TT--EEEHHHHHHHH
T ss_pred             cCCCCceEeEECHHHHHhhC
Confidence            22221 27999999999986

A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.

>PLN02503 fatty acyl-CoA reductase 2

Probab=99.96  E-value=1.3e-27  Score=220.32  Aligned_cols=263  Identities=17%  Similarity=0.159  Sum_probs=177.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCC---eEEEEecCCCCcccCCcccccccc-------------C-CCC-----CCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGY---SVTTTVRSELDPEHRNSKDLSFLK-------------N-LPG-----ASE   61 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~-------------~-~~~-----~~~   61 (331)
                      .+|+|||||||||||++|++.|++.+.   +|++++|...     .....+.+.             + .+.     ...
T Consensus       118 ~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~-----~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~  192 (605)
T PLN02503        118 RGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKD-----KEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLS  192 (605)
T ss_pred             cCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCC-----chhHHHHHHHHHhhhhhHHHHHHhcCccccccccc
Confidence            357999999999999999999998653   6899999762     211111110             0 010     135


Q ss_pred             cEEEEeCCCCCC------ccHHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccc
Q 020104           62 RLRIFHADLSHP------DGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNA  135 (331)
Q Consensus        62 ~~~~~~~D~~~~------~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~  135 (331)
                      ++.++.+|+.++      +..+.+.+++|+|||+|+.+.+. .++. ..+++|+.++.+++++|++.+.+++|||+||.+
T Consensus       193 Ki~~v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~f~-~~~~-~a~~vNV~GT~nLLelA~~~~~lk~fV~vSTay  270 (605)
T PLN02503        193 KLVPVVGNVCESNLGLEPDLADEIAKEVDVIINSAANTTFD-ERYD-VAIDINTRGPCHLMSFAKKCKKLKLFLQVSTAY  270 (605)
T ss_pred             cEEEEEeeCCCcccCCCHHHHHHHHhcCCEEEECccccccc-cCHH-HHHHHHHHHHHHHHHHHHHcCCCCeEEEccCce
Confidence            789999999987      34555667899999999987754 3344 889999999999999999875478999999999


Q ss_pred             eeecCC--CCCCcccCCC-----------------CCCh------------------hhh---h-------hcCCCCchh
Q 020104          136 AVFYND--KDVDMMDETF-----------------WSDV------------------DYI---R-------KLDSWGKSY  168 (331)
Q Consensus       136 ~~~~~~--~~~~~~~E~~-----------------~~~~------------------~~~---~-------~~~~~~~~Y  168 (331)
                      +|+...  -.+.+++..+                 +.+.                  +..   .       -+..+.|.|
T Consensus       271 VyG~~~G~i~E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~l~~~g~~~~~~~~~pNtY  350 (605)
T PLN02503        271 VNGQRQGRIMEKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQDTY  350 (605)
T ss_pred             eecCCCCeeeeeecCcccccccccccccccccccccCCHHHHHHHHHHhhhcccchHHHHHHhhhcccchhhhCCCCChH
Confidence            997431  1222222100                 0000                  000   0       123456889


Q ss_pred             HhhHHHHHHHHHHHHHHcCCcEEEeccCceeC----------CCCCCCCCccHHHHHHHHhCCCc-ccccCCC-ccceeH
Q 020104          169 AISKTLTERAALEFAEEHGLDLVTLIPSMVVG----------PFICPKFAGSVRSSLALILGNRE-EYGFLLN-TSMVHV  236 (331)
Q Consensus       169 ~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G----------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~i~v  236 (331)
                      ..+|..+|++++++.  .++|++|+||+.|.+          ++.....+    .......|.-. .++++.. .|+|+|
T Consensus       351 t~TK~lAE~lV~~~~--~~LPv~IvRPsiV~st~~eP~pGw~d~~~~~~p----~~~~~g~G~lr~~~~~~~~~~DiVPV  424 (605)
T PLN02503        351 VFTKAMGEMVINSMR--GDIPVVIIRPSVIESTWKDPFPGWMEGNRMMDP----IVLYYGKGQLTGFLADPNGVLDVVPA  424 (605)
T ss_pred             HHHHHHHHHHHHHhc--CCCCEEEEcCCEecccccCCccccccCccccch----hhhheeccceeEEEeCCCeeEeEEee
Confidence            999999999999754  479999999999943          33211111    11111122211 2333333 699999


Q ss_pred             HHHHHHHHHhhcC-----CCCCceEEEe-c--cccCHHHHHHHHHhhCCCC
Q 020104          237 DDVARAHIFLLEY-----PDAKGRYICS-S--HTLTIQEMAEFLSAKYPEY  279 (331)
Q Consensus       237 ~D~a~~~~~~~~~-----~~~~~~~~~~-~--~~~s~~e~~~~i~~~~~~~  279 (331)
                      |.++++++.++..     ...+.+||++ +  .+++++|+.+.+.+.+...
T Consensus       425 D~vvna~i~a~a~~~~~~~~~~~vYn~ts~~~nP~t~~~~~~~~~~~~~~~  475 (605)
T PLN02503        425 DMVVNATLAAMAKHGGAAKPEINVYQIASSVVNPLVFQDLARLLYEHYKSS  475 (605)
T ss_pred             cHHHHHHHHHHHhhhcccCCCCCEEEeCCCCCCCeEHHHHHHHHHHHHhhC
Confidence            9999999998431     1235689974 5  6899999999999866533

>KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism]

Probab=99.96  E-value=4.2e-28  Score=191.64  Aligned_cols=304  Identities=18%  Similarity=0.150  Sum_probs=221.8

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCC--CCcEEEEeCCCCCCccHHHHhc-
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGA--SERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .|..||||-||.-|++|++.|+.+||+|+++.|..+.+.   ..+++.+..-+..  ........+|++|...+..++. 
T Consensus        28 rkvALITGItGQDGSYLaEfLL~KgYeVHGiiRRsSsFN---T~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~  104 (376)
T KOG1372|consen   28 RKVALITGITGQDGSYLAEFLLSKGYEVHGIIRRSSSFN---TARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLIST  104 (376)
T ss_pred             ceEEEEecccCCCchHHHHHHHhCCceeeEEEeeccccc---hhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhc
Confidence            346799999999999999999999999999999874332   2344444433322  2456788999999999999986 


Q ss_pred             -CccEEEEecccCC--CCCCChhhHHHHHHHHHHHHHHHHHHhcCC--ccEEEEecccceeecCCCCCCcccCCCCCChh
Q 020104           82 -GCTGVLHVATPVD--FEDKEPEEVITQRAINGTLGILKSCLKSGT--VKRVVYTSSNAAVFYNDKDVDMMDETFWSDVD  156 (331)
Q Consensus        82 -~~d~Vih~a~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~  156 (331)
                       +++-|+|+|+..+  .+..-+. -..++...|+++|+++.+.++.  .-||-..||+..||  .-.+.|.+|.+|    
T Consensus       105 ikPtEiYnLaAQSHVkvSFdlpe-YTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstSElyG--kv~e~PQsE~TP----  177 (376)
T KOG1372|consen  105 IKPTEVYNLAAQSHVKVSFDLPE-YTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTSELYG--KVQEIPQSETTP----  177 (376)
T ss_pred             cCchhhhhhhhhcceEEEeeccc-ceeeccchhhhhHHHHHHhcCcccceeEEecccHhhcc--cccCCCcccCCC----
Confidence             7899999998665  2222232 5667888999999999998862  23888899988884  667889999997    


Q ss_pred             hhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCC-ccHHHHH-HHHhCCC--cccccCCC-c
Q 020104          157 YIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFA-GSVRSSL-ALILGNR--EEYGFLLN-T  231 (331)
Q Consensus       157 ~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~-~~~~~~~-~~~~~~~--~~~~~~~~-~  231 (331)
                           ..|+++|+.+|..+--++..|.+.+++-.+.=-..+.-.|+....+. .-+.+.+ ....++.  ..++.... +
T Consensus       178 -----FyPRSPYa~aKmy~~WivvNyREAYnmfAcNGILFNHESPRRGenFVTRKItRsvakI~~gqqe~~~LGNL~a~R  252 (376)
T KOG1372|consen  178 -----FYPRSPYAAAKMYGYWIVVNYREAYNMFACNGILFNHESPRRGENFVTRKITRSVAKISLGQQEKIELGNLSALR  252 (376)
T ss_pred             -----CCCCChhHHhhhhheEEEEEhHHhhcceeeccEeecCCCCccccchhhHHHHHHHHHhhhcceeeEEecchhhhc
Confidence                 47899999999999988888888887755533333444454433221 1122222 2223443  34444444 8


Q ss_pred             cceeHHHHHHHHHHhhcCCCCCceEEEeccccCHHHHHHHHHhhCCCC-CCC------------------CccCCccccC
Q 020104          232 SMVHVDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEY-PIP------------------TVDSLAEIEG  292 (331)
Q Consensus       232 ~~i~v~D~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~~~~-~~~------------------~~~~~~~~~~  292 (331)
                      ||-|..|.++||+.+++++.+....+.+++..|++|+.+......|.. ...                  ....+-+...
T Consensus       253 DWGhA~dYVEAMW~mLQ~d~PdDfViATge~hsVrEF~~~aF~~ig~~l~Weg~gv~~~~~n~~g~v~V~v~~kYyRPtE  332 (376)
T KOG1372|consen  253 DWGHAGDYVEAMWLMLQQDSPDDFVIATGEQHSVREFCNLAFAEIGEVLNWEGEGVDEVGKNDDGVVRVKVDPKYYRPTE  332 (376)
T ss_pred             ccchhHHHHHHHHHHHhcCCCCceEEecCCcccHHHHHHHHHHhhCcEEeecccccccccccCCceEEEEecccccCcch
Confidence            999999999999999999888777788999999999999988766511 100                  0001112244


Q ss_pred             CcCcccCcHHH-HHcCCccccChhhhHHHHHH
Q 020104          293 YRAPGSSSKKL-LDAGFRYNYGIDEMFDEAIQ  323 (331)
Q Consensus       293 ~~~~~~~~~k~-~~lg~~~~~~~~e~i~~~~~  323 (331)
                      .....-|.+|+ +.|||+|+.++++.+++|+.
T Consensus       333 Vd~LqGdasKAk~~LgW~pkv~f~eLVkeMv~  364 (376)
T KOG1372|consen  333 VDTLQGDASKAKKTLGWKPKVTFPELVKEMVA  364 (376)
T ss_pred             hhhhcCChHHHHHhhCCCCccCHHHHHHHHHH
Confidence            45677899999 99999999999999999975

>PRK12320 hypothetical protein; Provisional

Probab=99.96  E-value=6.9e-27  Score=217.77  Aligned_cols=236  Identities=15%  Similarity=0.192  Sum_probs=167.6

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCccE
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTG   85 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~   85 (331)
                      |||||||||||||++|+++|+++|++|++++|.+.     .   .        ...+++++.+|+.|+. +.+++.++|+
T Consensus         1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~-----~---~--------~~~~ve~v~~Dl~d~~-l~~al~~~D~   63 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPH-----D---A--------LDPRVDYVCASLRNPV-LQELAGEADA   63 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChh-----h---c--------ccCCceEEEccCCCHH-HHHHhcCCCE
Confidence            48999999999999999999999999999998761     1   0        0146789999999984 7788889999


Q ss_pred             EEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCCCC
Q 020104           86 VLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWG  165 (331)
Q Consensus        86 Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~  165 (331)
                      |||+|+...   .    ...++|+.++.+++++|++.+ + ++||+||.  ++  ...                      
T Consensus        64 VIHLAa~~~---~----~~~~vNv~Gt~nLleAA~~~G-v-RiV~~SS~--~G--~~~----------------------  108 (699)
T PRK12320         64 VIHLAPVDT---S----APGGVGITGLAHVANAAARAG-A-RLLFVSQA--AG--RPE----------------------  108 (699)
T ss_pred             EEEcCccCc---c----chhhHHHHHHHHHHHHHHHcC-C-eEEEEECC--CC--CCc----------------------
Confidence            999998532   1    123589999999999999998 6 79999985  22  110                      


Q ss_pred             chhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHHHHHHHHHH
Q 020104          166 KSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIF  245 (331)
Q Consensus       166 ~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~  245 (331)
                       .|.    .+|.++..    ++++++++|++++||++........+..++.....       .....++|++|++++++.
T Consensus       109 -~~~----~aE~ll~~----~~~p~~ILR~~nVYGp~~~~~~~r~I~~~l~~~~~-------~~pI~vIyVdDvv~alv~  172 (699)
T PRK12320        109 -LYR----QAETLVST----GWAPSLVIRIAPPVGRQLDWMVCRTVATLLRSKVS-------ARPIRVLHLDDLVRFLVL  172 (699)
T ss_pred             -ccc----HHHHHHHh----cCCCEEEEeCceecCCCCcccHhHHHHHHHHHHHc-------CCceEEEEHHHHHHHHHH
Confidence             122    35665543    56899999999999996543222223332221111       112356899999999999


Q ss_pred             hhcCCCCCceEEE-eccccCHHHHHHHHHhhCCCCCCCCccCCccccCCcCcccCcHHH-HHcCCccccChhh
Q 020104          246 LLEYPDAKGRYIC-SSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSSKKL-LDAGFRYNYGIDE  316 (331)
Q Consensus       246 ~~~~~~~~~~~~~-~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~lg~~~~~~~~e  316 (331)
                      +++.+. +++||+ +++.+|+.|+++.+....+...+..      ........-+.+.. ..++|.|+.+|++
T Consensus       173 al~~~~-~GiyNIG~~~~~Si~el~~~i~~~~p~~~~~~------~~~~~~~~pdi~~a~~~~~w~~~~~~~~  238 (699)
T PRK12320        173 ALNTDR-NGVVDLATPDTTNVVTAWRLLRSVDPHLRTRR------VRSWEQLIPEVDIAAVQEDWNFEFGWQA  238 (699)
T ss_pred             HHhCCC-CCEEEEeCCCeeEHHHHHHHHHHhCCCccccc------cccHHHhCCCCchhhhhcCCCCcchHHH
Confidence            998643 569996 5678999999999988755222211      11122345566666 7789999986653

>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.95  E-value=1.4e-27  Score=201.92  Aligned_cols=255  Identities=20%  Similarity=0.219  Sum_probs=172.5

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccCCccccccccCC-C-------CCCCcEEEEeCCCCCC---
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNSKDLSFLKNL-P-------GASERLRIFHADLSHP---   73 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~D~~~~---   73 (331)
                      ++||+||||||+|.+|+.+|+.+- .+|++++|..     +....++++... .       ....+++++.+|+..+   
T Consensus         1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~-----s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lG   75 (382)
T COG3320           1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQ-----SDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLG   75 (382)
T ss_pred             CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecC-----CHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCC
Confidence            479999999999999999999874 5999999987     433344444322 1       2357899999999855   


Q ss_pred             ---ccHHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCC
Q 020104           74 ---DGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDET  150 (331)
Q Consensus        74 ---~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~  150 (331)
                         ..++++.+.+|.|||+|+.+++-  .|..+....|+.||..+++.|...+ .|.|.|+||.+|+..........+++
T Consensus        76 L~~~~~~~La~~vD~I~H~gA~Vn~v--~pYs~L~~~NVlGT~evlrLa~~gk-~Kp~~yVSsisv~~~~~~~~~~~~~~  152 (382)
T COG3320          76 LSERTWQELAENVDLIIHNAALVNHV--FPYSELRGANVLGTAEVLRLAATGK-PKPLHYVSSISVGETEYYSNFTVDFD  152 (382)
T ss_pred             CCHHHHHHHhhhcceEEecchhhccc--CcHHHhcCcchHhHHHHHHHHhcCC-CceeEEEeeeeeccccccCCCccccc
Confidence               47778888999999999988754  2334889999999999999999987 78999999999986432222222222


Q ss_pred             --CCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCC--CccHHHHHHHHhCCCcccc
Q 020104          151 --FWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKF--AGSVRSSLALILGNREEYG  226 (331)
Q Consensus       151 --~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~  226 (331)
                        ++.    ...-..+.++|++||+.+|.++++..+. |++++|+|||.|-|+...+.+  ..++.++...+..-. .++
T Consensus       153 ~~~~~----~~~~~~~~~GY~~SKwvaE~Lvr~A~~r-GLpv~I~Rpg~I~gds~tG~~n~~D~~~Rlv~~~~~lg-~~P  226 (382)
T COG3320         153 EISPT----RNVGQGLAGGYGRSKWVAEKLVREAGDR-GLPVTIFRPGYITGDSRTGALNTRDFLTRLVLGLLQLG-IAP  226 (382)
T ss_pred             ccccc----ccccCccCCCcchhHHHHHHHHHHHhhc-CCCeEEEecCeeeccCccCccccchHHHHHHHHHHHhC-CCC
Confidence              221    1122345789999999999999999886 999999999999999875432  334444443332221 111


Q ss_pred             cCC-CccceeHHHHHH-----------HHHHhhcCCC-CCceEEE--eccccCHHHHHHHHHh
Q 020104          227 FLL-NTSMVHVDDVAR-----------AHIFLLEYPD-AKGRYIC--SSHTLTIQEMAEFLSA  274 (331)
Q Consensus       227 ~~~-~~~~i~v~D~a~-----------~~~~~~~~~~-~~~~~~~--~~~~~s~~e~~~~i~~  274 (331)
                      ... ..+.+.++.+++           ++..+..++. .-..|.+  -+..+...++.+.+.+
T Consensus       227 ~~~~~~~~~p~~~v~~~v~~~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~i~l~~~~~w~~~  289 (382)
T COG3320         227 DSEYSLDMLPVDHVARAVVAPSVQVAEAIAALGAHSDIRFNQLHMLTHPDEIGLDEYVDWLIS  289 (382)
T ss_pred             CcccchhhCccceeeEEeehhhhhHHHHHHHhccCccchhhheecccCCCccchhHHHHhHhh
Confidence            111 123333333333           3333332111 1123442  3677888888888877

>PRK06482 short chain dehydrogenase; Provisional

Probab=99.94  E-value=8.6e-25  Score=187.81  Aligned_cols=233  Identities=18%  Similarity=0.146  Sum_probs=164.8

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      .|+||||||+|+||++++++|+++|++|+++.|+.     +....   +.+.  ...++.++.+|+.|.+++.++++   
T Consensus         2 ~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~-----~~~~~---~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~   71 (276)
T PRK06482          2 SKTWFITGASSGFGRGMTERLLARGDRVAATVRRP-----DALDD---LKAR--YGDRLWVLQLDVTDSAAVRAVVDRAF   71 (276)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHH---HHHh--ccCceEEEEccCCCHHHHHHHHHHHH
Confidence            46899999999999999999999999999999986     22222   2111  12468899999999988877664   


Q ss_pred             ----CccEEEEecccCCCCCC-----ChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCCCCccc
Q 020104           82 ----GCTGVLHVATPVDFEDK-----EPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        82 ----~~d~Vih~a~~~~~~~~-----~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                          ++|+|||+|+.......     +..+..+++|+.++.++++++    ++.+ .+++|++||......         
T Consensus        72 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~~---------  141 (276)
T PRK06482         72 AALGRIDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQG-GGRIVQVSSEGGQIA---------  141 (276)
T ss_pred             HHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcCcccccC---------
Confidence                48999999986542211     112367889999999999997    4555 679999999654310         


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCce---eCCCCCCCC--C---cc-HHHHHH
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMV---VGPFICPKF--A---GS-VRSSLA  216 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v---~G~~~~~~~--~---~~-~~~~~~  216 (331)
                                   .++.+.|+.+|...|.+++.++.+   ++++++++||+.+   ||++.....  .   .. ...+..
T Consensus       142 -------------~~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~  208 (276)
T PRK06482        142 -------------YPGFSLYHATKWGIEGFVEAVAQEVAPFGIEFTIVEPGPARTNFGAGLDRGAPLDAYDDTPVGDLRR  208 (276)
T ss_pred             -------------CCCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCccccCCcccccccCCCccccchhhHHHHH
Confidence                         122457999999999999988766   5899999999988   665432110  0   00 111111


Q ss_pred             HHhCCCcccccCCCccceeHHHHHHHHHHhhcCCCCCceEEEe-ccccCHHHHHHHHHhhCC
Q 020104          217 LILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDAKGRYICS-SHTLTIQEMAEFLSAKYP  277 (331)
Q Consensus       217 ~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~i~~~~~  277 (331)
                      .+....  +     .-+.+++|++++++.++..+..+..||++ ++..++.|+++.+.+.+.
T Consensus       209 ~~~~~~--~-----~~~~d~~~~~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  263 (276)
T PRK06482        209 ALADGS--F-----AIPGDPQKMVQAMIASADQTPAPRRLTLGSDAYASIRAALSERLAALE  263 (276)
T ss_pred             HHhhcc--C-----CCCCCHHHHHHHHHHHHcCCCCCeEEecChHHHHHHHHHHHHHHHHHH
Confidence            111111  1     12468999999999999877666778875 567788888877766543

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=99.94  E-value=5.6e-25  Score=189.81  Aligned_cols=248  Identities=19%  Similarity=0.160  Sum_probs=166.3

Q ss_pred             eEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh------
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI------   80 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~------   80 (331)
                      +||||||||++|++++++|+++|++|++++|++.     ...           ..+++.+.+|+.|++++.+++      
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~-----~~~-----------~~~~~~~~~d~~d~~~l~~a~~~~~~~   64 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSS-----SSA-----------GPNEKHVKFDWLDEDTWDNPFSSDDGM   64 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCc-----ccc-----------CCCCccccccCCCHHHHHHHHhcccCc
Confidence            4999999999999999999999999999999982     211           135677889999999999998      


Q ss_pred             cC-ccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhh
Q 020104           81 AG-CTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIR  159 (331)
Q Consensus        81 ~~-~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~  159 (331)
                      .+ +|.|+|+++...    +   .     .....+++++|++.+ ++|||++||..+....                   
T Consensus        65 ~g~~d~v~~~~~~~~----~---~-----~~~~~~~i~aa~~~g-v~~~V~~Ss~~~~~~~-------------------  112 (285)
T TIGR03649        65 EPEISAVYLVAPPIP----D---L-----APPMIKFIDFARSKG-VRRFVLLSASIIEKGG-------------------  112 (285)
T ss_pred             CCceeEEEEeCCCCC----C---h-----hHHHHHHHHHHHHcC-CCEEEEeeccccCCCC-------------------
Confidence            57 999999986421    1   1     124568999999999 9999999986543100                   


Q ss_pred             hcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC-cccccCCC-ccceeHH
Q 020104          160 KLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR-EEYGFLLN-TSMVHVD  237 (331)
Q Consensus       160 ~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~i~v~  237 (331)
                                ..+...|..++.   .++++++++||+.+++.......       ...+.... ...+.+.. ++|+|++
T Consensus       113 ----------~~~~~~~~~l~~---~~gi~~tilRp~~f~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~v~~~  172 (285)
T TIGR03649       113 ----------PAMGQVHAHLDS---LGGVEYTVLRPTWFMENFSEEFH-------VEAIRKENKIYSATGDGKIPFVSAD  172 (285)
T ss_pred             ----------chHHHHHHHHHh---ccCCCEEEEeccHHhhhhccccc-------ccccccCCeEEecCCCCccCcccHH
Confidence                      011223333332   14899999999998865311100       01111222 22222222 7999999


Q ss_pred             HHHHHHHHhhcCCCC-CceEEE-eccccCHHHHHHHHHhhCCCC----CCCCccC--------Cccc-----------cC
Q 020104          238 DVARAHIFLLEYPDA-KGRYIC-SSHTLTIQEMAEFLSAKYPEY----PIPTVDS--------LAEI-----------EG  292 (331)
Q Consensus       238 D~a~~~~~~~~~~~~-~~~~~~-~~~~~s~~e~~~~i~~~~~~~----~~~~~~~--------~~~~-----------~~  292 (331)
                      |++++++.++.++.. ++.|++ +++.+|+.|+++.+.+.+|..    .++....        ++..           ..
T Consensus       173 Dva~~~~~~l~~~~~~~~~~~l~g~~~~s~~eia~~l~~~~g~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  252 (285)
T TIGR03649       173 DIARVAYRALTDKVAPNTDYVVLGPELLTYDDVAEILSRVLGRKITHVKLTEEELAQRLQSFGMPEDLARMLASLDTAVK  252 (285)
T ss_pred             HHHHHHHHHhcCCCcCCCeEEeeCCccCCHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            999999999987643 567875 558999999999999988731    1111100        0000           00


Q ss_pred             CcCcccCcHHH-HHcCCccccChhhhHHHHHH
Q 020104          293 YRAPGSSSKKL-LDAGFRYNYGIDEMFDEAIQ  323 (331)
Q Consensus       293 ~~~~~~~~~k~-~~lg~~~~~~~~e~i~~~~~  323 (331)
                      .......++.. +.+|..|+ +|++-+++..+
T Consensus       253 ~g~~~~~~~~~~~~~G~~p~-~~~~~~~~~~~  283 (285)
T TIGR03649       253 NGAEVRLNDVVKAVTGSKPR-GFRDFAESNKA  283 (285)
T ss_pred             CCccccccchHHHHhCcCCc-cHHHHHHHhhh
Confidence            01111234444 77899999 89988887644

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=99.93  E-value=1.6e-24  Score=223.61  Aligned_cols=257  Identities=20%  Similarity=0.213  Sum_probs=179.2

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC----CeEEEEecCCCCcccCCccccccccCC--------CCCCCcEEEEeCCCCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG----YSVTTTVRSELDPEHRNSKDLSFLKNL--------PGASERLRIFHADLSH   72 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g----~~V~~~~r~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~D~~~   72 (331)
                      .++|||||||||+|+++++.|++++    ++|+++.|..     ........+...        .....+++++.+|+.+
T Consensus       971 ~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~ 1045 (1389)
T TIGR03443       971 PITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAK-----SEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSK 1045 (1389)
T ss_pred             CceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcC-----ChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCC
Confidence            4789999999999999999999876    8999999976     222222221110        0112468999999975


Q ss_pred             C------ccHHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCC----
Q 020104           73 P------DGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDK----  142 (331)
Q Consensus        73 ~------~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~----  142 (331)
                      +      +.+.++..++|+|||+|+.+++.  .+.......|+.++.+++++|++.+ +++|+|+||.++|+....    
T Consensus      1046 ~~lgl~~~~~~~l~~~~d~iiH~Aa~~~~~--~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~v~vSS~~v~~~~~~~~~~ 1122 (1389)
T TIGR03443      1046 EKFGLSDEKWSDLTNEVDVIIHNGALVHWV--YPYSKLRDANVIGTINVLNLCAEGK-AKQFSFVSSTSALDTEYYVNLS 1122 (1389)
T ss_pred             ccCCcCHHHHHHHHhcCCEEEECCcEecCc--cCHHHHHHhHHHHHHHHHHHHHhCC-CceEEEEeCeeecCcccccchh
Confidence            4      45666677899999999987643  3343566789999999999999887 889999999999852110    


Q ss_pred             ------CCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCC--CccHHHH
Q 020104          143 ------DVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKF--AGSVRSS  214 (331)
Q Consensus       143 ------~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~--~~~~~~~  214 (331)
                            ....+.|+++..    .....+.++|+.+|+.+|.++..+.. .+++++++||+.|||++..+..  ...+...
T Consensus      1123 ~~~~~~~~~~~~e~~~~~----~~~~~~~~~Y~~sK~~aE~l~~~~~~-~g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~ 1197 (1389)
T TIGR03443      1123 DELVQAGGAGIPESDDLM----GSSKGLGTGYGQSKWVAEYIIREAGK-RGLRGCIVRPGYVTGDSKTGATNTDDFLLRM 1197 (1389)
T ss_pred             hhhhhccCCCCCcccccc----cccccCCCChHHHHHHHHHHHHHHHh-CCCCEEEECCCccccCCCcCCCCchhHHHHH
Confidence                  111234443211    11123456799999999999998766 4899999999999999755422  1222222


Q ss_pred             HHHHhCCCcccccC-CCccceeHHHHHHHHHHhhcCCCC---CceEEEe-ccccCHHHHHHHHHhh
Q 020104          215 LALILGNREEYGFL-LNTSMVHVDDVARAHIFLLEYPDA---KGRYICS-SHTLTIQEMAEFLSAK  275 (331)
Q Consensus       215 ~~~~~~~~~~~~~~-~~~~~i~v~D~a~~~~~~~~~~~~---~~~~~~~-~~~~s~~e~~~~i~~~  275 (331)
                      ....... ..++.. ..++|++++|++++++.++.++..   ..+||++ +..+++.++++.+.+.
T Consensus      1198 ~~~~~~~-~~~p~~~~~~~~~~Vddva~ai~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~ 1262 (1389)
T TIGR03443      1198 LKGCIQL-GLIPNINNTVNMVPVDHVARVVVAAALNPPKESELAVAHVTGHPRIRFNDFLGTLKTY 1262 (1389)
T ss_pred             HHHHHHh-CCcCCCCCccccccHHHHHHHHHHHHhCCcccCCCCEEEeCCCCCCcHHHHHHHHHHh
Confidence            2221111 122222 237999999999999999876532   2478875 4579999999999764

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=99.93  E-value=1.9e-24  Score=174.14  Aligned_cols=183  Identities=32%  Similarity=0.396  Sum_probs=139.9

Q ss_pred             EEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCccEEE
Q 020104            8 VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTGVL   87 (331)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi   87 (331)
                      |+|+||||++|+.++++|+++|++|++++|++     ++.+.          .++++++.+|+.|++++.+++.++|+||
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~-----~~~~~----------~~~~~~~~~d~~d~~~~~~al~~~d~vi   65 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSP-----SKAED----------SPGVEIIQGDLFDPDSVKAALKGADAVI   65 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSG-----GGHHH----------CTTEEEEESCTTCHHHHHHHHTTSSEEE
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCc-----hhccc----------ccccccceeeehhhhhhhhhhhhcchhh
Confidence            79999999999999999999999999999998     22222          2689999999999999999999999999


Q ss_pred             EecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCCCCch
Q 020104           88 HVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKS  167 (331)
Q Consensus        88 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~  167 (331)
                      |+++....            ....+.++++++++++ ++|+|++||.+++.  ........+..+           ....
T Consensus        66 ~~~~~~~~------------~~~~~~~~~~a~~~~~-~~~~v~~s~~~~~~--~~~~~~~~~~~~-----------~~~~  119 (183)
T PF13460_consen   66 HAAGPPPK------------DVDAAKNIIEAAKKAG-VKRVVYLSSAGVYR--DPPGLFSDEDKP-----------IFPE  119 (183)
T ss_dssp             ECCHSTTT------------HHHHHHHHHHHHHHTT-SSEEEEEEETTGTT--TCTSEEEGGTCG-----------GGHH
T ss_pred             hhhhhhcc------------cccccccccccccccc-cccceeeeccccCC--CCCccccccccc-----------chhh
Confidence            99975321            1677889999999999 99999999999874  222111111110           1136


Q ss_pred             hHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhh
Q 020104          168 YAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLL  247 (331)
Q Consensus       168 Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~  247 (331)
                      |...|..+|+.++.    .+++++++||+.+||+....  ......            ......++|+.+|+|++++.++
T Consensus       120 ~~~~~~~~e~~~~~----~~~~~~ivrp~~~~~~~~~~--~~~~~~------------~~~~~~~~i~~~DvA~~~~~~l  181 (183)
T PF13460_consen  120 YARDKREAEEALRE----SGLNWTIVRPGWIYGNPSRS--YRLIKE------------GGPQGVNFISREDVAKAIVEAL  181 (183)
T ss_dssp             HHHHHHHHHHHHHH----STSEEEEEEESEEEBTTSSS--EEEESS------------TSTTSHCEEEHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHh----cCCCEEEEECcEeEeCCCcc--eeEEec------------cCCCCcCcCCHHHHHHHHHHHh
Confidence            88889888887753    68999999999999996331  111000            1112259999999999999987


Q ss_pred             cC
Q 020104          248 EY  249 (331)
Q Consensus       248 ~~  249 (331)
                      ++
T Consensus       182 ~~  183 (183)
T PF13460_consen  182 EN  183 (183)
T ss_dssp             H-
T ss_pred             CC
Confidence            63

...

>KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion]

Probab=99.92  E-value=3.2e-24  Score=173.20  Aligned_cols=276  Identities=18%  Similarity=0.205  Sum_probs=196.7

Q ss_pred             eEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCccEE
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTGV   86 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V   86 (331)
                      .+-|.|||||+|+++|..|.+.|.+|++--|.++    .....++...++    ..+-+...|+.|+++++++++...+|
T Consensus        63 VaTVFGAtGFlGryvvnklak~GSQviiPyR~d~----~~~r~lkvmGdL----GQvl~~~fd~~DedSIr~vvk~sNVV  134 (391)
T KOG2865|consen   63 VATVFGATGFLGRYVVNKLAKMGSQVIIPYRGDE----YDPRHLKVMGDL----GQVLFMKFDLRDEDSIRAVVKHSNVV  134 (391)
T ss_pred             EEEEecccccccHHHHHHHhhcCCeEEEeccCCc----cchhheeecccc----cceeeeccCCCCHHHHHHHHHhCcEE
Confidence            4678899999999999999999999999999763    222333333333    67889999999999999999999999


Q ss_pred             EEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCCCCc
Q 020104           87 LHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGK  166 (331)
Q Consensus        87 ih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~  166 (331)
                      ||+.|.- +... .. .+.++|+.+.+.|++.|++.| +.|||++|+...-.                        ...+
T Consensus       135 INLIGrd-~eTk-nf-~f~Dvn~~~aerlAricke~G-VerfIhvS~Lganv------------------------~s~S  186 (391)
T KOG2865|consen  135 INLIGRD-YETK-NF-SFEDVNVHIAERLARICKEAG-VERFIHVSCLGANV------------------------KSPS  186 (391)
T ss_pred             EEeeccc-cccC-Cc-ccccccchHHHHHHHHHHhhC-hhheeehhhccccc------------------------cChH
Confidence            9999852 2222 22 677899999999999999999 99999999865210                        1134


Q ss_pred             hhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHh--CCCcccccCCC--ccceeHHHHHHH
Q 020104          167 SYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALIL--GNREEYGFLLN--TSMVHVDDVARA  242 (331)
Q Consensus       167 ~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~i~v~D~a~~  242 (331)
                      -|-.+|.++|..+++.-    -..+|+||+.|||..++.     +..+....+  +.-+.++.+..  -..+||-|+|++
T Consensus       187 r~LrsK~~gE~aVrdaf----PeAtIirPa~iyG~eDrf-----ln~ya~~~rk~~~~pL~~~GekT~K~PVyV~DVaa~  257 (391)
T KOG2865|consen  187 RMLRSKAAGEEAVRDAF----PEATIIRPADIYGTEDRF-----LNYYASFWRKFGFLPLIGKGEKTVKQPVYVVDVAAA  257 (391)
T ss_pred             HHHHhhhhhHHHHHhhC----CcceeechhhhcccchhH-----HHHHHHHHHhcCceeeecCCcceeeccEEEehHHHH
Confidence            68899999999999853    368999999999987542     222222222  22233333322  489999999999


Q ss_pred             HHHhhcCCCCCc-eEE-EeccccCHHHHHHHHHhhC---C---CCCCCCcc-----------------CCcc----ccCC
Q 020104          243 HIFLLEYPDAKG-RYI-CSSHTLTIQEMAEFLSAKY---P---EYPIPTVD-----------------SLAE----IEGY  293 (331)
Q Consensus       243 ~~~~~~~~~~~~-~~~-~~~~~~s~~e~~~~i~~~~---~---~~~~~~~~-----------------~~~~----~~~~  293 (331)
                      ++.+++.+...| .|- +++..++..|+++.+.+..   +   ..+.|.+.                 .+..    ....
T Consensus       258 IvnAvkDp~s~Gktye~vGP~~yql~eLvd~my~~~~~~~ry~r~~mP~f~a~a~~~~f~~~pf~~~~pln~d~ie~~~v  337 (391)
T KOG2865|consen  258 IVNAVKDPDSMGKTYEFVGPDRYQLSELVDIMYDMAREWPRYVRLPMPIFKAMAAARDFMIVPFPPPSPLNRDQIERLTV  337 (391)
T ss_pred             HHHhccCccccCceeeecCCchhhHHHHHHHHHHHHhhccccccCCcHHHHHHHhhhheeecCCCCCCCCCHHHhhheee
Confidence            999999987655 785 6778899999999987622   1   12222110                 0000    0122


Q ss_pred             cCcccCcHHH-HHcCCccccChhhhHHHHHHHHHHc
Q 020104          294 RAPGSSSKKL-LDAGFRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       294 ~~~~~~~~k~-~~lg~~~~~~~~e~i~~~~~~~~~~  328 (331)
                      ....++...- ..||..++ ++|..--+.+..|+.-
T Consensus       338 ~~~vlt~~~tleDLgv~~t-~le~~~~e~l~~yR~~  372 (391)
T KOG2865|consen  338 TDLVLTGAPTLEDLGVVLT-KLELYPVEFLRQYRKG  372 (391)
T ss_pred             hhhhcCCCCcHhhcCceee-ecccccHHHHHHHhhc
Confidence            3444454444 88899987 8887777766666554

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=99.92  E-value=5.2e-24  Score=180.21  Aligned_cols=228  Identities=18%  Similarity=0.205  Sum_probs=156.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCC-ccHHHHh-c
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHP-DGFDAAI-A   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~-~   81 (331)
                      .+|+|+||||||+||++++++|+++|++|+++.|+..     .....  +   . ...+++++.+|+.|. +.+.+.+ .
T Consensus        16 ~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~-----~~~~~--~---~-~~~~~~~~~~Dl~d~~~~l~~~~~~   84 (251)
T PLN00141         16 KTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVD-----KAKTS--L---P-QDPSLQIVRADVTEGSDKLVEAIGD   84 (251)
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHH-----HHHHh--c---c-cCCceEEEEeeCCCCHHHHHHHhhc
Confidence            4679999999999999999999999999999999872     21111  0   1 124688999999984 6677777 6


Q ss_pred             CccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhc
Q 020104           82 GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKL  161 (331)
Q Consensus        82 ~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~  161 (331)
                      ++|+|||+++....  .++. ..+++|..++.++++++++.+ +++||++||.++|+.  ....+..+...       . 
T Consensus        85 ~~d~vi~~~g~~~~--~~~~-~~~~~n~~~~~~ll~a~~~~~-~~~iV~iSS~~v~g~--~~~~~~~~~~~-------~-  150 (251)
T PLN00141         85 DSDAVICATGFRRS--FDPF-APWKVDNFGTVNLVEACRKAG-VTRFILVSSILVNGA--AMGQILNPAYI-------F-  150 (251)
T ss_pred             CCCEEEECCCCCcC--CCCC-CceeeehHHHHHHHHHHHHcC-CCEEEEEccccccCC--CcccccCcchh-------H-
Confidence            89999999875321  1222 446788999999999999988 899999999998752  11112111110       0 


Q ss_pred             CCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHHHHHH
Q 020104          162 DSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVAR  241 (331)
Q Consensus       162 ~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~  241 (331)
                      ..+...|...|..+|++++.    .+++++++||+.+++.......  .       ........     ..+++.+|+|+
T Consensus       151 ~~~~~~~~~~k~~~e~~l~~----~gi~~~iirpg~~~~~~~~~~~--~-------~~~~~~~~-----~~~i~~~dvA~  212 (251)
T PLN00141        151 LNLFGLTLVAKLQAEKYIRK----SGINYTIVRPGGLTNDPPTGNI--V-------MEPEDTLY-----EGSISRDQVAE  212 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHh----cCCcEEEEECCCccCCCCCceE--E-------ECCCCccc-----cCcccHHHHHH
Confidence            01112345568888877654    6899999999999986422110  0       00000011     26899999999


Q ss_pred             HHHHhhcCCCC-CceEEE-e---ccccCHHHHHHHHHh
Q 020104          242 AHIFLLEYPDA-KGRYIC-S---SHTLTIQEMAEFLSA  274 (331)
Q Consensus       242 ~~~~~~~~~~~-~~~~~~-~---~~~~s~~e~~~~i~~  274 (331)
                      +++.++.++.. +.++.+ +   +...+++++...+++
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (251)
T PLN00141        213 VAVEALLCPESSYKVVEIVARADAPKRSYKDLFASIKQ  250 (251)
T ss_pred             HHHHHhcChhhcCcEEEEecCCCCCchhHHHHHHHhhc
Confidence            99999987664 445543 2   234899999888764

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=99.92  E-value=4.4e-24  Score=182.03  Aligned_cols=221  Identities=17%  Similarity=0.193  Sum_probs=152.1

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      ++++|||||+|+||+++++.|+++|++|++++|++     ..... ...+..   ...++.++++|+.|.+++.++++  
T Consensus         7 ~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~   78 (262)
T PRK13394          7 GKTAVVTGAASGIGKEIALELARAGAAVAIADLNQ-----DGANAVADEINK---AGGKAIGVAMDVTNEDAVNAGIDKV   78 (262)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCh-----HHHHHHHHHHHh---cCceEEEEECCCCCHHHHHHHHHHH
Confidence            57899999999999999999999999999999987     22221 111111   12457889999999998877764  


Q ss_pred             -----CccEEEEecccCCCCC-----CChhhHHHHHHHHH----HHHHHHHH-HhcCCccEEEEecccceeecCCCCCCc
Q 020104           82 -----GCTGVLHVATPVDFED-----KEPEEVITQRAING----TLGILKSC-LKSGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~~-----~~~~~~~~~~n~~~----~~~l~~~~-~~~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                           ++|+|||+|+......     .+..+..+++|+.+    +.++++++ ++.+ .+++|++||......       
T Consensus        79 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~-~~~iv~~ss~~~~~~-------  150 (262)
T PRK13394         79 AERFGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDR-GGVVIYMGSVHSHEA-------  150 (262)
T ss_pred             HHHcCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcC-CcEEEEEcchhhcCC-------
Confidence                 3899999998654211     11123667799998    66777777 5555 789999999654320       


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCcc-------HHHHHH
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGS-------VRSSLA  216 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~-------~~~~~~  216 (331)
                                     .++.+.|+.+|...+.+++.++.+   .+++++++||+.++++.....+...       ......
T Consensus       151 ---------------~~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~  215 (262)
T PRK13394        151 ---------------SPLKSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVK  215 (262)
T ss_pred             ---------------CCCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccchhhhhhhHhhhhccCCChHHHHH
Confidence                           122457999999999999888766   4799999999999998533211110       000011


Q ss_pred             HHhCCCcccccCCCccceeHHHHHHHHHHhhcCCCC---CceEEEecc
Q 020104          217 LILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDA---KGRYICSSH  261 (331)
Q Consensus       217 ~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~---~~~~~~~~~  261 (331)
                      .+.+...     ..++|++++|+++++++++..+..   +..|+++++
T Consensus       216 ~~~~~~~-----~~~~~~~~~dva~a~~~l~~~~~~~~~g~~~~~~~g  258 (262)
T PRK13394        216 KVMLGKT-----VDGVFTTVEDVAQTVLFLSSFPSAALTGQSFVVSHG  258 (262)
T ss_pred             HHHhcCC-----CCCCCCCHHHHHHHHHHHcCccccCCcCCEEeeCCc
Confidence            1111111     115899999999999999986532   345666553

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.91  E-value=2.9e-23  Score=175.53  Aligned_cols=220  Identities=19%  Similarity=0.169  Sum_probs=154.1

Q ss_pred             CCC-CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH
Q 020104            1 MEE-GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         1 M~~-~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      |.. ++|+||||||||+||++|+++|+++|++|+++.|+..    .....+..  .......++.++.+|+.|.+++.++
T Consensus         1 ~~~~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~D~~~~~~v~~~   74 (249)
T PRK12825          1 MGSLMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDE----EAAEELVE--AVEALGRRAQAVQADVTDKAALEAA   74 (249)
T ss_pred             CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCH----HHHHHHHH--HHHhcCCceEEEECCcCCHHHHHHH
Confidence            443 3468999999999999999999999999988777652    11111111  0111124688999999999988877


Q ss_pred             hc-------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCC
Q 020104           80 IA-------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDK  142 (331)
Q Consensus        80 ~~-------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~  142 (331)
                      ++       ++|+|||+|+.....      ..++ ...+++|+.++.++++.+    ++.+ .+++|++||...+...  
T Consensus        75 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~i~~SS~~~~~~~--  150 (249)
T PRK12825         75 VAAAVERFGRIDILVNNAGIFEDKPLADMSDDEW-DEVIDVNLSGVFHLLRAVVPPMRKQR-GGRIVNISSVAGLPGW--  150 (249)
T ss_pred             HHHHHHHcCCCCEEEECCccCCCCChhhCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEECccccCCCC--
Confidence            64       579999999954422      1122 367889999999998887    4555 7899999998766311  


Q ss_pred             CCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHh
Q 020104          143 DVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALIL  219 (331)
Q Consensus       143 ~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~  219 (331)
                                          .+...|+.+|...+.+++.++.+   .+++++++||+.++|+........   .....  
T Consensus       151 --------------------~~~~~y~~sK~~~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~---~~~~~--  205 (249)
T PRK12825        151 --------------------PGRSNYAAAKAGLVGLTKALARELAEYGITVNMVAPGDIDTDMKEATIEE---AREAK--  205 (249)
T ss_pred             --------------------CCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCccCCccccccch---hHHhh--
Confidence                                11346999999999999887765   589999999999999865432111   11110  


Q ss_pred             CCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEec
Q 020104          220 GNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSS  260 (331)
Q Consensus       220 ~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~  260 (331)
                      .....+     ..+++.+|+++++.+++....   .+.+|++++
T Consensus       206 ~~~~~~-----~~~~~~~dva~~~~~~~~~~~~~~~g~~~~i~~  244 (249)
T PRK12825        206 DAETPL-----GRSGTPEDIARAVAFLCSDASDYITGQVIEVTG  244 (249)
T ss_pred             hccCCC-----CCCcCHHHHHHHHHHHhCccccCcCCCEEEeCC
Confidence            001111     258999999999999997653   245677654

>PRK09135 pteridine reductase; Provisional

Probab=99.91  E-value=4.7e-23  Score=174.35  Aligned_cols=220  Identities=16%  Similarity=0.148  Sum_probs=148.5

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      .+.++||||||+|+||++++++|+++|++|++++|+..    .....+ ..+...  ....+.++.+|+.|.+++..+++
T Consensus         4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~----~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~   77 (249)
T PRK09135          4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSA----AEADALAAELNAL--RPGSAAALQADLLDPDALPELVA   77 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCH----HHHHHHHHHHHhh--cCCceEEEEcCCCCHHHHHHHHH
Confidence            34478999999999999999999999999999998752    111111 111111  11357889999999998887775


Q ss_pred             -------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhc--CCccEEEEecccceeecCCCCCCc
Q 020104           82 -------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKS--GTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                             ++|+|||+|+.....      ..++ +..+++|+.++.++++++...  .....++++|+....         
T Consensus        78 ~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~-~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------  147 (249)
T PRK09135         78 ACVAAFGRLDALVNNASSFYPTPLGSITEAQW-DDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIHAE---------  147 (249)
T ss_pred             HHHHHcCCCCEEEECCCCCCCCChhhCCHHHH-HHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChhhc---------
Confidence                   479999999854311      1122 368889999999999998643  112356665552211         


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc--CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcc
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH--GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREE  224 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~  224 (331)
                          .         +.++.+.|+.+|..+|.+++.++.+.  +++++++||+.++|+.....+.....  .....+.  .
T Consensus       148 ----~---------~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~~~~v~pg~~~~~~~~~~~~~~~~--~~~~~~~--~  210 (249)
T PRK09135        148 ----R---------PLKGYPVYCAAKAALEMLTRSLALELAPEVRVNAVAPGAILWPEDGNSFDEEAR--QAILART--P  210 (249)
T ss_pred             ----C---------CCCCchhHHHHHHHHHHHHHHHHHHHCCCCeEEEEEeccccCccccccCCHHHH--HHHHhcC--C
Confidence                1         12345689999999999999988775  59999999999999975432222111  1111111  1


Q ss_pred             cccCCCccceeHHHHHHHHHHhhcCC-C-CCceEEEec
Q 020104          225 YGFLLNTSMVHVDDVARAHIFLLEYP-D-AKGRYICSS  260 (331)
Q Consensus       225 ~~~~~~~~~i~v~D~a~~~~~~~~~~-~-~~~~~~~~~  260 (331)
                      +.     .+.+++|+++++..++... . .+.+|++++
T Consensus       211 ~~-----~~~~~~d~a~~~~~~~~~~~~~~g~~~~i~~  243 (249)
T PRK09135        211 LK-----RIGTPEDIAEAVRFLLADASFITGQILAVDG  243 (249)
T ss_pred             cC-----CCcCHHHHHHHHHHHcCccccccCcEEEECC
Confidence            11     3446899999997666542 2 355788754

>PRK06180 short chain dehydrogenase; Provisional

Probab=99.91  E-value=3.8e-23  Score=177.57  Aligned_cols=224  Identities=18%  Similarity=0.092  Sum_probs=152.4

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      +++||||||+|+||++++++|+++|++|++++|+.     ...   ..+.+.  ...++..+.+|+.|.+++.++++   
T Consensus         4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~-----~~~---~~l~~~--~~~~~~~~~~D~~d~~~~~~~~~~~~   73 (277)
T PRK06180          4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSE-----AAR---ADFEAL--HPDRALARLLDVTDFDAIDAVVADAE   73 (277)
T ss_pred             CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCH-----HHH---HHHHhh--cCCCeeEEEccCCCHHHHHHHHHHHH
Confidence            56899999999999999999999999999999987     222   222111  12467889999999998887765   


Q ss_pred             ----CccEEEEecccCCCCC--C-C--hhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCccc
Q 020104           82 ----GCTGVLHVATPVDFED--K-E--PEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        82 ----~~d~Vih~a~~~~~~~--~-~--~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                          ++|+|||+|+......  . .  .....+++|+.++.++++++.    +.+ .+++|++||...+...        
T Consensus        74 ~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~iSS~~~~~~~--------  144 (277)
T PRK06180         74 ATFGPIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARR-RGHIVNITSMGGLITM--------  144 (277)
T ss_pred             HHhCCCCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccC-CCEEEEEecccccCCC--------
Confidence                5899999998654211  1 1  113568999999999999854    344 5799999997655311        


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCC---ccHHHHHHHHhCCC
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFA---GSVRSSLALILGNR  222 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~---~~~~~~~~~~~~~~  222 (331)
                                    ++...|+.+|...|.+++.++.+   ++++++++||+.+.++.......   ..............
T Consensus       145 --------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~  210 (277)
T PRK06180        145 --------------PGIGYYCGSKFALEGISESLAKEVAPFGIHVTAVEPGSFRTDWAGRSMVRTPRSIADYDALFGPIR  210 (277)
T ss_pred             --------------CCcchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCcccCccccccccCCCCcHhHHHHHHHHH
Confidence                          22457999999999999888765   48999999999998764322111   11111110000000


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCCCCceEEEecc
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPDAKGRYICSSH  261 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~~~  261 (331)
                      ..........+..++|++++++.++.++.....|..+.+
T Consensus       211 ~~~~~~~~~~~~~~~dva~~~~~~l~~~~~~~~~~~g~~  249 (277)
T PRK06180        211 QAREAKSGKQPGDPAKAAQAILAAVESDEPPLHLLLGSD  249 (277)
T ss_pred             HHHHhhccCCCCCHHHHHHHHHHHHcCCCCCeeEeccHH
Confidence            000000112567899999999999988766656655443

>PRK07806 short chain dehydrogenase; Provisional

Probab=99.91  E-value=3.4e-23  Score=175.14  Aligned_cols=229  Identities=17%  Similarity=0.144  Sum_probs=154.2

Q ss_pred             CCCC-CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHH
Q 020104            1 MEEG-KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDA   78 (331)
Q Consensus         1 M~~~-~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~   78 (331)
                      |+.+ .++++||||+|+||++++++|+++|++|++++|+..    ...+.+ ..+..   ...++.++.+|+.|++++..
T Consensus         1 ~~~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~----~~~~~~~~~l~~---~~~~~~~~~~D~~~~~~~~~   73 (248)
T PRK07806          1 MGDLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKA----PRANKVVAEIEA---AGGRASAVGADLTDEESVAA   73 (248)
T ss_pred             CCCCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCch----HhHHHHHHHHHh---cCCceEEEEcCCCCHHHHHH
Confidence            5433 478999999999999999999999999999998752    111111 11111   12457889999999998877


Q ss_pred             Hhc-------CccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCCCCcccCC
Q 020104           79 AIA-------GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKDVDMMDET  150 (331)
Q Consensus        79 ~~~-------~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~E~  150 (331)
                      +++       ++|+|||+|+.......++. ..+++|+.++.++++++.+.- ...++|++||......+.      .+.
T Consensus        74 ~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~-~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~------~~~  146 (248)
T PRK07806         74 LMDTAREEFGGLDALVLNASGGMESGMDED-YAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHFIPT------VKT  146 (248)
T ss_pred             HHHHHHHhCCCCcEEEECCCCCCCCCCCcc-eeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhcCcc------ccC
Confidence            664       58999999986433333444 778899999999999998752 135899999954331110      011


Q ss_pred             CCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCccccc
Q 020104          151 FWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGF  227 (331)
Q Consensus       151 ~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (331)
                      .           +...+|+.+|.++|.+++.++.+   .++++++++|+.+-++..............   .......  
T Consensus       147 ~-----------~~~~~Y~~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~---~~~~~~~--  210 (248)
T PRK07806        147 M-----------PEYEPVARSKRAGEDALRALRPELAEKGIGFVVVSGDMIEGTVTATLLNRLNPGAI---EARREAA--  210 (248)
T ss_pred             C-----------ccccHHHHHHHHHHHHHHHHHHHhhccCeEEEEeCCccccCchhhhhhccCCHHHH---HHHHhhh--
Confidence            1           11347999999999999998765   479999999987766532110000000000   0000111  


Q ss_pred             CCCccceeHHHHHHHHHHhhcCCCCC-ceEEEeccc
Q 020104          228 LLNTSMVHVDDVARAHIFLLEYPDAK-GRYICSSHT  262 (331)
Q Consensus       228 ~~~~~~i~v~D~a~~~~~~~~~~~~~-~~~~~~~~~  262 (331)
                         ..+++++|++++++.+++.+... ..|++++..
T Consensus       211 ---~~~~~~~dva~~~~~l~~~~~~~g~~~~i~~~~  243 (248)
T PRK07806        211 ---GKLYTVSEFAAEVARAVTAPVPSGHIEYVGGAD  243 (248)
T ss_pred             ---cccCCHHHHHHHHHHHhhccccCccEEEecCcc
Confidence               37999999999999999876544 467876644

>PRK08263 short chain dehydrogenase; Provisional

Probab=99.91  E-value=1.2e-22  Score=174.45  Aligned_cols=234  Identities=17%  Similarity=0.119  Sum_probs=163.5

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      +|+||||||+|+||++++++|+++|++|++++|+.     +....+   .+.  ....+.++.+|+.|.+++.++++   
T Consensus         3 ~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~-----~~~~~~---~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~   72 (275)
T PRK08263          3 EKVWFITGASRGFGRAWTEAALERGDRVVATARDT-----ATLADL---AEK--YGDRLLPLALDVTDRAAVFAAVETAV   72 (275)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCH-----HHHHHH---HHh--ccCCeeEEEccCCCHHHHHHHHHHHH
Confidence            46899999999999999999999999999999987     222211   111  12457888999999988877654   


Q ss_pred             ----CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCCCCcc
Q 020104           82 ----GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 ----~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                          ++|+|||+||.....      .+++ ...+++|+.++..+++++    ++.+ .+++|++||...+...       
T Consensus        73 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~vsS~~~~~~~-------  143 (275)
T PRK08263         73 EHFGRLDIVVNNAGYGLFGMIEEVTESEA-RAQIDTNFFGALWVTQAVLPYLREQR-SGHIIQISSIGGISAF-------  143 (275)
T ss_pred             HHcCCCCEEEECCCCccccccccCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEEcChhhcCCC-------
Confidence                579999999865421      1123 378899999987777765    4555 6799999997765311       


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCC--ccHHHHHHHHhCCC
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFA--GSVRSSLALILGNR  222 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~--~~~~~~~~~~~~~~  222 (331)
                                     +..+.|+.+|...+.+.+.++.+   ++++++++||+.+.++.......  ..............
T Consensus       144 ---------------~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~  208 (275)
T PRK08263        144 ---------------PMSGIYHASKWALEGMSEALAQEVAEFGIKVTLVEPGGYSTDWAGTSAKRATPLDAYDTLREELA  208 (275)
T ss_pred             ---------------CCccHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCccCCccccccccCCCchhhhhHHHHHH
Confidence                           11347999999999999888765   58999999999988764321110  00000000000000


Q ss_pred             cccccCCCccc-eeHHHHHHHHHHhhcCCCCCceEEE-ec-cccCHHHHHHHHHhh
Q 020104          223 EEYGFLLNTSM-VHVDDVARAHIFLLEYPDAKGRYIC-SS-HTLTIQEMAEFLSAK  275 (331)
Q Consensus       223 ~~~~~~~~~~~-i~v~D~a~~~~~~~~~~~~~~~~~~-~~-~~~s~~e~~~~i~~~  275 (331)
                      ...   ....+ ++.+|++++++.+++.+...+.|++ ++ ..+++.++.+.+.+.
T Consensus       209 ~~~---~~~~~~~~p~dva~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (275)
T PRK08263        209 EQW---SERSVDGDPEAAAEALLKLVDAENPPLRLFLGSGVLDLAKADYERRLATW  261 (275)
T ss_pred             HHH---HhccCCCCHHHHHHHHHHHHcCCCCCeEEEeCchHHHHHHHHHHHHHHHH
Confidence            000   01245 8899999999999998776666654 33 578999999998874

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=99.91  E-value=1e-22  Score=184.69  Aligned_cols=234  Identities=17%  Similarity=0.143  Sum_probs=159.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccc-cccC-----CC-CCCCcEEEEeCCCCCCccH
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLS-FLKN-----LP-GASERLRIFHADLSHPDGF   76 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~-----~~-~~~~~~~~~~~D~~~~~~~   76 (331)
                      ++++||||||+|+||++++++|++.|++|++++|+.     +....+. .+.+     .. ....+++++.+|+.|.+++
T Consensus        79 ~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~-----ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI  153 (576)
T PLN03209         79 DEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSA-----QRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI  153 (576)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCH-----HHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence            356899999999999999999999999999999987     2222211 1100     00 0123588999999999999


Q ss_pred             HHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChh
Q 020104           77 DAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVD  156 (331)
Q Consensus        77 ~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~  156 (331)
                      .+++.++|+|||++|.......++. ..+++|+.++.+++++|++.+ ++|||++||.++...+.      .+..     
T Consensus       154 ~~aLggiDiVVn~AG~~~~~v~d~~-~~~~VN~~Gt~nLl~Aa~~ag-VgRIV~VSSiga~~~g~------p~~~-----  220 (576)
T PLN03209        154 GPALGNASVVICCIGASEKEVFDVT-GPYRIDYLATKNLVDAATVAK-VNHFILVTSLGTNKVGF------PAAI-----  220 (576)
T ss_pred             HHHhcCCCEEEEccccccccccchh-hHHHHHHHHHHHHHHHHHHhC-CCEEEEEccchhcccCc------cccc-----
Confidence            9999999999999986532222333 678899999999999999988 89999999976531110      0000     


Q ss_pred             hhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeH
Q 020104          157 YIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHV  236 (331)
Q Consensus       157 ~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v  236 (331)
                           ......|...|..+|+.+..    +++++++||||.++++.+.......+    . .......+     ...+..
T Consensus       221 -----~~sk~~~~~~KraaE~~L~~----sGIrvTIVRPG~L~tp~d~~~~t~~v----~-~~~~d~~~-----gr~isr  281 (576)
T PLN03209        221 -----LNLFWGVLCWKRKAEEALIA----SGLPYTIVRPGGMERPTDAYKETHNL----T-LSEEDTLF-----GGQVSN  281 (576)
T ss_pred             -----hhhHHHHHHHHHHHHHHHHH----cCCCEEEEECCeecCCccccccccce----e-eccccccC-----CCccCH
Confidence                 01234677888888888764    68999999999999874331100000    0 00011111     256899


Q ss_pred             HHHHHHHHHhhcCCC-C-CceEEE-eccc---cCHHHHHHHHHh
Q 020104          237 DDVARAHIFLLEYPD-A-KGRYIC-SSHT---LTIQEMAEFLSA  274 (331)
Q Consensus       237 ~D~a~~~~~~~~~~~-~-~~~~~~-~~~~---~s~~e~~~~i~~  274 (331)
                      +|+|+++++++.++. . +.+|.+ ++..   .++.++.+.+-.
T Consensus       282 eDVA~vVvfLasd~~as~~kvvevi~~~~~p~~~~~~~~~~ip~  325 (576)
T PLN03209        282 LQVAELMACMAKNRRLSYCKVVEVIAETTAPLTPMEELLAKIPS  325 (576)
T ss_pred             HHHHHHHHHHHcCchhccceEEEEEeCCCCCCCCHHHHHHhccc
Confidence            999999999998654 3 456654 3332   566666665543

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=99.90  E-value=1.1e-22  Score=172.28  Aligned_cols=219  Identities=19%  Similarity=0.146  Sum_probs=155.1

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      +|+|+||||+|+||.+++++|+++|++|++++|+.     ..... ...+.   ....++.++.+|+.|.+++.+++.  
T Consensus         6 ~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~-----~~~~~~~~~l~---~~~~~~~~~~~Dl~~~~~~~~~~~~~   77 (251)
T PRK12826          6 GRVALVTGAARGIGRAIAVRLAADGAEVIVVDICG-----DDAAATAELVE---AAGGKARARQVDVRDRAALKAAVAAG   77 (251)
T ss_pred             CCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHH---hcCCeEEEEECCCCCHHHHHHHHHHH
Confidence            46899999999999999999999999999999986     22111 11111   112458899999999988888774  


Q ss_pred             -----CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCc
Q 020104           82 -----GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                           ++|+|||+++.....      ..++ ...++.|+.++.++++++.    +.+ .+++|++||...+..+      
T Consensus        78 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~ii~~ss~~~~~~~------  149 (251)
T PRK12826         78 VEDFGRLDILVANAGIFPLTPFAEMDDEQW-ERVIDVNLTGTFLLTQAALPALIRAG-GGRIVLTSSVAGPRVG------  149 (251)
T ss_pred             HHHhCCCCEEEECCCCCCCCChhhCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEEechHhhccC------
Confidence                 689999999865531      1122 3678899999999998874    445 6799999997654100      


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE  223 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  223 (331)
                                     .++...|+.+|.+++.+++.++.+   .+++++++||+.++|+.........+   ...... ..
T Consensus       150 ---------------~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~~~---~~~~~~-~~  210 (251)
T PRK12826        150 ---------------YPGLAHYAASKAGLVGFTRALALELAARNITVNSVHPGGVDTPMAGNLGDAQW---AEAIAA-AI  210 (251)
T ss_pred             ---------------CCCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCCCCcchhhhcCchHH---HHHHHh-cC
Confidence                           112347999999999999988765   38999999999999986543221111   111111 11


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecccc
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSHTL  263 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~~~  263 (331)
                      .+     ..+++++|++.++..++..+.   .+.+|++.++..
T Consensus       211 ~~-----~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~~  248 (251)
T PRK12826        211 PL-----GRLGEPEDIAAAVLFLASDEARYITGQTLPVDGGAT  248 (251)
T ss_pred             CC-----CCCcCHHHHHHHHHHHhCccccCcCCcEEEECCCcc
Confidence            11     168999999999999887543   355777766543

>PRK07775 short chain dehydrogenase; Provisional

Probab=99.90  E-value=2.5e-22  Score=172.22  Aligned_cols=220  Identities=17%  Similarity=0.178  Sum_probs=150.4

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      +|+++||||+|+||+++++.|+++|++|+++.|+.     ...... ..+..   ...++.++.+|+.|.+++.++++  
T Consensus        10 ~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~   81 (274)
T PRK07775         10 RRPALVAGASSGIGAATAIELAAAGFPVALGARRV-----EKCEELVDKIRA---DGGEAVAFPLDVTDPDSVKSFVAQA   81 (274)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHh---cCCeEEEEECCCCCHHHHHHHHHHH
Confidence            46899999999999999999999999999999876     221111 11111   12357888999999998887764  


Q ss_pred             -----CccEEEEecccCCCCC---CC--hhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCCcc
Q 020104           82 -----GCTGVLHVATPVDFED---KE--PEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~~---~~--~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                           ++|+|||+|+......   .+  .....+++|+.++.++++++..    .+ ..+||++||...+...       
T Consensus        82 ~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~-~g~iv~isS~~~~~~~-------  153 (274)
T PRK07775         82 EEALGEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERR-RGDLIFVGSDVALRQR-------  153 (274)
T ss_pred             HHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CceEEEECChHhcCCC-------
Confidence                 5799999998654211   11  1125678999999999888753    33 5689999997665311       


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcc
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREE  224 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~  224 (331)
                                     ++...|+.+|.+.|.+++.++.+.   +++++++|||.+.++..................    .
T Consensus       154 ---------------~~~~~Y~~sK~a~~~l~~~~~~~~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~----~  214 (274)
T PRK07775        154 ---------------PHMGAYGAAKAGLEAMVTNLQMELEGTGVRASIVHPGPTLTGMGWSLPAEVIGPMLEDWA----K  214 (274)
T ss_pred             ---------------CCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCCcccCcccccCChhhhhHHHHHHH----H
Confidence                           123479999999999999988664   899999999988654211111111111111111    0


Q ss_pred             cccCCCccceeHHHHHHHHHHhhcCCCCCceEEEe
Q 020104          225 YGFLLNTSMVHVDDVARAHIFLLEYPDAKGRYICS  259 (331)
Q Consensus       225 ~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~  259 (331)
                      ......+.++|++|+|++++.+++++..+.+||+.
T Consensus       215 ~~~~~~~~~~~~~dva~a~~~~~~~~~~~~~~~~~  249 (274)
T PRK07775        215 WGQARHDYFLRASDLARAITFVAETPRGAHVVNME  249 (274)
T ss_pred             hcccccccccCHHHHHHHHHHHhcCCCCCCeeEEe
Confidence            01111247999999999999999876545567763

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=99.90  E-value=1.9e-22  Score=171.21  Aligned_cols=220  Identities=17%  Similarity=0.177  Sum_probs=149.6

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh----
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI----   80 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~----   80 (331)
                      ++++|||||+|+||++++++|+++|++|++++|+.     ...+.+.....  ....++.++.+|+.|.+++.+++    
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~-----~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~   73 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGE-----AGAEAAAKVAT--DAGGSVIYLVADVTKEDEIADMIAAAA   73 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHH--hcCCceEEEECCCCCHHHHHHHHHHHH
Confidence            36899999999999999999999999999999987     22222221111  11246888999999998666554    


Q ss_pred             ---cCccEEEEecccCCCC---CCCh--hhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCCCCccc
Q 020104           81 ---AGCTGVLHVATPVDFE---DKEP--EEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        81 ---~~~d~Vih~a~~~~~~---~~~~--~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                         .++|+|||+|+.....   ..++  ....++.|+.++..+++++    ++.+ .+++|++||...+...        
T Consensus        74 ~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~~~~v~~ss~~~~~~~--------  144 (255)
T TIGR01963        74 AEFGGLDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQG-WGRIINIASAHGLVAS--------  144 (255)
T ss_pred             HhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CeEEEEEcchhhcCCC--------
Confidence               3589999999865421   1111  1356778999988887776    4556 7899999997655311        


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc--
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE--  223 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~--  223 (331)
                                    +..+.|+.+|...+.+++.++.+   .+++++++||+.++++......    .   ........  
T Consensus       145 --------------~~~~~y~~sk~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~~~~~~~~~----~---~~~~~~~~~~  203 (255)
T TIGR01963       145 --------------PFKSAYVAAKHGLIGLTKVLALEVAAHGITVNAICPGYVRTPLVEKQI----A---DQAKTRGIPE  203 (255)
T ss_pred             --------------CCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHHHHH----H---hhhcccCCCc
Confidence                          11246999999999999877664   3899999999999988421100    0   00000000  


Q ss_pred             ------ccccC-CCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          224 ------EYGFL-LNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       224 ------~~~~~-~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                            .+... ..++++|++|+|++++.++.++.   .+..|+++++
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~~~~~~g~~~~~~~g  251 (255)
T TIGR01963       204 EQVIREVMLPGQPTKRFVTVDEVAETALFLASDAAAGITGQAIVLDGG  251 (255)
T ss_pred             hHHHHHHHHccCccccCcCHHHHHHHHHHHcCccccCccceEEEEcCc
Confidence                  01011 12479999999999999997642   2446777653

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK06914 short chain dehydrogenase; Provisional

Probab=99.90  E-value=1.9e-22  Score=173.62  Aligned_cols=228  Identities=15%  Similarity=0.098  Sum_probs=154.1

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh----
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI----   80 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~----   80 (331)
                      ++++|||||||+||+++++.|+++|++|++++|++     +..+.+...........++.++.+|+.|++++.+ +    
T Consensus         3 ~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~   76 (280)
T PRK06914          3 KKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNP-----EKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVL   76 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCH-----HHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHH
Confidence            46799999999999999999999999999999987     2322221111111112468899999999988765 3    


Q ss_pred             ---cCccEEEEecccCCCCC------CChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCCCCcc
Q 020104           81 ---AGCTGVLHVATPVDFED------KEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        81 ---~~~d~Vih~a~~~~~~~------~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                         .++|+|||+|+......      .+. +..+++|+.++.++++++    ++.+ .+++|++||.......       
T Consensus        77 ~~~~~id~vv~~ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~vsS~~~~~~~-------  147 (280)
T PRK06914         77 KEIGRIDLLVNNAGYANGGFVEEIPVEEY-RKQFETNVFGAISVTQAVLPYMRKQK-SGKIINISSISGRVGF-------  147 (280)
T ss_pred             HhcCCeeEEEECCcccccCccccCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEECcccccCCC-------
Confidence               25799999998644211      122 366789999988888875    5555 6799999996544211       


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHH---HcCCcEEEeccCceeCCCCCCCCC---------ccHHHHH
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAE---EHGLDLVTLIPSMVVGPFICPKFA---------GSVRSSL  215 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~---~~~~~~~ilRp~~v~G~~~~~~~~---------~~~~~~~  215 (331)
                                     ++.+.|+.+|...+.+++.++.   .++++++++|||.++++.......         .......
T Consensus       148 ---------------~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~  212 (280)
T PRK06914        148 ---------------PGLSPYVSSKYALEGFSESLRLELKPFGIDVALIEPGSYNTNIWEVGKQLAENQSETTSPYKEYM  212 (280)
T ss_pred             ---------------CCCchhHHhHHHHHHHHHHHHHHhhhhCCEEEEEecCCcccchhhccccccccccccccchHHHH
Confidence                           2245799999999999888763   358999999999998874321110         0000111


Q ss_pred             HHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCCCCceEEEe-ccccCHH
Q 020104          216 ALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDAKGRYICS-SHTLTIQ  266 (331)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~-~~~~s~~  266 (331)
                      .......    ......+++++|+|++++.+++++.....|+++ +..+++.
T Consensus       213 ~~~~~~~----~~~~~~~~~~~dva~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (280)
T PRK06914        213 KKIQKHI----NSGSDTFGNPIDVANLIVEIAESKRPKLRYPIGKGVKLMIL  260 (280)
T ss_pred             HHHHHHH----hhhhhccCCHHHHHHHHHHHHcCCCCCcccccCCchHHHHH
Confidence            1111000    001136789999999999999988776677765 4445443

>PRK05875 short chain dehydrogenase; Provisional

Probab=99.90  E-value=3.3e-22  Score=171.82  Aligned_cols=236  Identities=20%  Similarity=0.192  Sum_probs=161.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|++|||||+|+||+++++.|+++|++|++++|+.     ..... ...+.... ...++.++.+|+.|++++..+++ 
T Consensus         6 ~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~-----~~~~~~~~~l~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~   79 (276)
T PRK05875          6 QDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNP-----DKLAAAAEEIEALK-GAGAVRYEPADVTDEDQVARAVDA   79 (276)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCH-----HHHHHHHHHHHhcc-CCCceEEEEcCCCCHHHHHHHHHH
Confidence            357999999999999999999999999999999986     22111 11111111 12467889999999988887765 


Q ss_pred             ------CccEEEEecccCCC----CCCCh--hhHHHHHHHHHHHHHHHHHHhcC---CccEEEEecccceeecCCCCCCc
Q 020104           82 ------GCTGVLHVATPVDF----EDKEP--EEVITQRAINGTLGILKSCLKSG---TVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~----~~~~~--~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                            ++|+|||+|+....    ...+.  ....+++|+.++.++++++.+..   ...++|++||...+..       
T Consensus        80 ~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~~-------  152 (276)
T PRK05875         80 ATAWHGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASNT-------  152 (276)
T ss_pred             HHHHcCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcCC-------
Confidence                  68999999985421    11111  13678899999999988776431   1358999999775421       


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE  223 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  223 (331)
                                     .++.++|+.+|.+.|.+++.++.+.   +++++++||+.+.++........  ........ ...
T Consensus       153 ---------------~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~--~~~~~~~~-~~~  214 (276)
T PRK05875        153 ---------------HRWFGAYGVTKSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDLVAPITES--PELSADYR-ACT  214 (276)
T ss_pred             ---------------CCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCccCCccccccccC--HHHHHHHH-cCC
Confidence                           1224579999999999999988765   68999999999977643221110  01111111 111


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCCCC---CceEEEe-cccc----CHHHHHHHHHhh
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYPDA---KGRYICS-SHTL----TIQEMAEFLSAK  275 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~~---~~~~~~~-~~~~----s~~e~~~~i~~~  275 (331)
                      ..     ..+++++|+++++.+++.++..   +.+++++ +..+    +..|+++.+.+.
T Consensus       215 ~~-----~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~  269 (276)
T PRK05875        215 PL-----PRVGEVEDVANLAMFLLSDAASWITGQVINVDGGHMLRRGPDFSSMLEPVFGA  269 (276)
T ss_pred             CC-----CCCcCHHHHHHHHHHHcCchhcCcCCCEEEECCCeeccCCccHHHHHHHHhhH
Confidence            11     2578899999999999987543   4567775 4454    778887777654

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=99.90  E-value=1.9e-22  Score=171.53  Aligned_cols=222  Identities=15%  Similarity=0.162  Sum_probs=150.1

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      +++||||||+|+||++++++|+++|++|++++|++     ........  ++.....++..+.+|+.|.+++.++++   
T Consensus         4 ~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~-----~~~~~~~~--~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~   76 (258)
T PRK12429          4 GKVALVTGAASGIGLEIALALAKEGAKVVIADLND-----EAAAAAAE--ALQKAGGKAIGVAMDVTDEEAINAGIDYAV   76 (258)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCH-----HHHHHHHH--HHHhcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence            47899999999999999999999999999999987     22222111  111112468889999999998887765   


Q ss_pred             ----CccEEEEecccCCCCC--C---ChhhHHHHHHHHHH----HHHHHHHHhcCCccEEEEecccceeecCCCCCCccc
Q 020104           82 ----GCTGVLHVATPVDFED--K---EPEEVITQRAINGT----LGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        82 ----~~d~Vih~a~~~~~~~--~---~~~~~~~~~n~~~~----~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                          ++|+|||+|+......  .   +..+..+++|+.++    ..++.++++.+ .++||++||...+...        
T Consensus        77 ~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~iss~~~~~~~--------  147 (258)
T PRK12429         77 ETFGGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQG-GGRIINMASVHGLVGS--------  147 (258)
T ss_pred             HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcC-CeEEEEEcchhhccCC--------
Confidence                5899999998544211  1   11225677888884    44555555556 7899999997655311        


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCcc-------HHHHHHHH
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGS-------VRSSLALI  218 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~-------~~~~~~~~  218 (331)
                                    ++.+.|+.+|.+.+.+.+.++.+.   +++++++||+.++++.........       ........
T Consensus       148 --------------~~~~~y~~~k~a~~~~~~~l~~~~~~~~i~v~~~~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (258)
T PRK12429        148 --------------AGKAAYVSAKHGLIGLTKVVALEGATHGVTVNAICPGYVDTPLVRKQIPDLAKERGISEEEVLEDV  213 (258)
T ss_pred             --------------CCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCcchhhhhhhhhhccccCCChHHHHHHH
Confidence                          124579999999999988876653   799999999999998643211100       00000000


Q ss_pred             hCCCcccccCCCccceeHHHHHHHHHHhhcCCCC---CceEEEecc
Q 020104          219 LGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDA---KGRYICSSH  261 (331)
Q Consensus       219 ~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~---~~~~~~~~~  261 (331)
                      ...     ....+.+++++|+|+++.+++.....   +..|+++++
T Consensus       214 ~~~-----~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g  254 (258)
T PRK12429        214 LLP-----LVPQKRFTTVEEIADYALFLASFAAKGVTGQAWVVDGG  254 (258)
T ss_pred             Hhc-----cCCccccCCHHHHHHHHHHHcCccccCccCCeEEeCCC
Confidence            000     01125899999999999999876432   345666653

>KOG2774 consensus NAD dependent epimerase [General function prediction only]

Probab=99.90  E-value=4.7e-22  Score=156.48  Aligned_cols=293  Identities=14%  Similarity=0.104  Sum_probs=214.2

Q ss_pred             CceEEEecCcchhHHHHHHHHHHC-CCe-EEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDH-GYS-VTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI--   80 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~-g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~--   80 (331)
                      ..+|||||+-|.+|..+++.|... |.+ |++.+..++     ....          ...-.++..|+.|.+.+++++  
T Consensus        44 ~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KP-----p~~V----------~~~GPyIy~DILD~K~L~eIVVn  108 (366)
T KOG2774|consen   44 APRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKP-----PANV----------TDVGPYIYLDILDQKSLEEIVVN  108 (366)
T ss_pred             CCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCC-----chhh----------cccCCchhhhhhccccHHHhhcc
Confidence            358999999999999999998865 654 554433221     1111          123467889999999999987  


Q ss_pred             cCccEEEEecccCC-CCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhh
Q 020104           81 AGCTGVLHVATPVD-FEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIR  159 (331)
Q Consensus        81 ~~~d~Vih~a~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~  159 (331)
                      ..+|.+||..+..+ .++.+.. ...++|+.|..|+++.|++++ . ++...|+.+.+|..+ ...|-..-+        
T Consensus       109 ~RIdWL~HfSALLSAvGE~NVp-LA~~VNI~GvHNil~vAa~~k-L-~iFVPSTIGAFGPtS-PRNPTPdlt--------  176 (366)
T KOG2774|consen  109 KRIDWLVHFSALLSAVGETNVP-LALQVNIRGVHNILQVAAKHK-L-KVFVPSTIGAFGPTS-PRNPTPDLT--------  176 (366)
T ss_pred             cccceeeeHHHHHHHhcccCCc-eeeeecchhhhHHHHHHHHcC-e-eEeecccccccCCCC-CCCCCCCee--------
Confidence            36999999987554 4444444 778999999999999999998 4 777889999987332 222222222        


Q ss_pred             hcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCC--CCCccHHHHHHHH-hCCC-cccccCCCcccee
Q 020104          160 KLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICP--KFAGSVRSSLALI-LGNR-EEYGFLLNTSMVH  235 (331)
Q Consensus       160 ~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~--~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~i~  235 (331)
                       ...|++.||.||.-+|-+-+.+..++++++-.+|.+.+......+  ...+....+.... +|+. -.+.+.....++|
T Consensus       177 -IQRPRTIYGVSKVHAEL~GEy~~hrFg~dfr~~rfPg~is~~~pgggttdya~A~f~~Al~~gk~tCylrpdtrlpmmy  255 (366)
T KOG2774|consen  177 -IQRPRTIYGVSKVHAELLGEYFNHRFGVDFRSMRFPGIISATKPGGGTTDYAIAIFYDALQKGKHTCYLRPDTRLPMMY  255 (366)
T ss_pred             -eecCceeechhHHHHHHHHHHHHhhcCccceecccCcccccCCCCCCcchhHHHHHHHHHHcCCcccccCCCccCceee
Confidence             246789999999999999999988899999999988877643222  2223333333333 3333 3334444479999


Q ss_pred             HHHHHHHHHHhhcCCCC---CceEEEeccccCHHHHHHHHHhhCCCCCCCCccCCccc---cCCcCcccCcHHH-HHcCC
Q 020104          236 VDDVARAHIFLLEYPDA---KGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEI---EGYRAPGSSSKKL-LDAGF  308 (331)
Q Consensus       236 v~D~a~~~~~~~~~~~~---~~~~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~k~-~~lg~  308 (331)
                      .+|+.++++.++..+..   ..+||+++-++|-.|++..+.+..|.+.+.+  .....   .+.++..+|.+.+ ++..|
T Consensus       256 ~~dc~~~~~~~~~a~~~~lkrr~ynvt~~sftpee~~~~~~~~~p~~~i~y--~~~srq~iad~wp~~~dds~ar~~wh~  333 (366)
T KOG2774|consen  256 DTDCMASVIQLLAADSQSLKRRTYNVTGFSFTPEEIADAIRRVMPGFEIDY--DICTRQSIADSWPMSLDDSEARTEWHE  333 (366)
T ss_pred             hHHHHHHHHHHHhCCHHHhhhheeeeceeccCHHHHHHHHHhhCCCceeec--ccchhhhhhhhcccccCchhHhhHHHH
Confidence            99999999998876643   4579999999999999999999999666665  22221   5567888999999 88999


Q ss_pred             ccccChhhhHHHHHHHHHH
Q 020104          309 RYNYGIDEMFDEAIQCCKE  327 (331)
Q Consensus       309 ~~~~~~~e~i~~~~~~~~~  327 (331)
                      +.++.+...+.-+++.-++
T Consensus       334 ~h~~~l~~~i~~~i~~~~~  352 (366)
T KOG2774|consen  334 KHSLHLLSIISTVVAVHKS  352 (366)
T ss_pred             hhhhhHHHHHHHHHHHHHh
Confidence            9998888888777765443

>PRK07074 short chain dehydrogenase; Provisional

Probab=99.90  E-value=4.3e-22  Score=169.30  Aligned_cols=230  Identities=20%  Similarity=0.152  Sum_probs=159.0

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      ++++|||||||+||++++++|+++|++|++++|+.     ...+.+.  ..+.  ..++.++.+|+.|.+++..+++   
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~-----~~~~~~~--~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~   72 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDA-----AALAAFA--DALG--DARFVPVACDLTDAASLAAALANAA   72 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHH--HHhc--CCceEEEEecCCCHHHHHHHHHHHH
Confidence            56899999999999999999999999999999987     2222111  1111  1367889999999998877765   


Q ss_pred             ----CccEEEEecccCCCC---CCCh--hhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCccc
Q 020104           82 ----GCTGVLHVATPVDFE---DKEP--EEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        82 ----~~d~Vih~a~~~~~~---~~~~--~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                          ++|+|||+++.....   ..++  ....+++|+.++.++++++.    +.+ .+++|++||.....  ..      
T Consensus        73 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~~--~~------  143 (257)
T PRK07074         73 AERGPVDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRS-RGAVVNIGSVNGMA--AL------  143 (257)
T ss_pred             HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CeEEEEEcchhhcC--CC------
Confidence                489999999864321   1111  12456789999988888774    344 57899999954321  00      


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCccc
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEY  225 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  225 (331)
                                     ....|+.+|.+.+.+++.++.+.   +++++.+||+.++++.......... ........ ....
T Consensus       144 ---------------~~~~y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~-~~~~~~~~-~~~~  206 (257)
T PRK07074        144 ---------------GHPAYSAAKAGLIHYTKLLAVEYGRFGIRANAVAPGTVKTQAWEARVAANP-QVFEELKK-WYPL  206 (257)
T ss_pred             ---------------CCcccHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCCcchhhcccccCh-HHHHHHHh-cCCC
Confidence                           01259999999999999988664   6999999999998875322111111 11111111 1111


Q ss_pred             ccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEe-ccccCHHHHHHHHHh
Q 020104          226 GFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICS-SHTLTIQEMAEFLSA  274 (331)
Q Consensus       226 ~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~-~~~~s~~e~~~~i~~  274 (331)
                           ++|++++|+++++++++....  ..| .+++. +...+.+|+++.+..
T Consensus       207 -----~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~  254 (257)
T PRK07074        207 -----QDFATPDDVANAVLFLASPAARAITGVCLPVDGGLTAGNREMARTLTL  254 (257)
T ss_pred             -----CCCCCHHHHHHHHHHHcCchhcCcCCcEEEeCCCcCcCChhhhhhhcc
Confidence                 489999999999999997532  234 45665 467889999998754

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=99.90  E-value=6.4e-22  Score=168.50  Aligned_cols=217  Identities=20%  Similarity=0.119  Sum_probs=146.6

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      +|+++||||+|+||++++++|+++|++|++++|+.     ...+....+..   ....+.++.+|+.|.+++.++++   
T Consensus         8 ~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~-----~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~   79 (260)
T PRK12823          8 GKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSE-----LVHEVAAELRA---AGGEALALTADLETYAGAQAAMAAAV   79 (260)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCch-----HHHHHHHHHHh---cCCeEEEEEEeCCCHHHHHHHHHHHH
Confidence            47899999999999999999999999999999875     21111122211   12457789999999887776664   


Q ss_pred             ----CccEEEEecccCC-------CCCCChhhHHHHHHHHHHHHHHH----HHHhcCCccEEEEecccceeecCCCCCCc
Q 020104           82 ----GCTGVLHVATPVD-------FEDKEPEEVITQRAINGTLGILK----SCLKSGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 ----~~d~Vih~a~~~~-------~~~~~~~~~~~~~n~~~~~~l~~----~~~~~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                          ++|++||+|+...       ....+. +..+++|+.++..+++    .+++.+ ..++|++||...++  .     
T Consensus        80 ~~~~~id~lv~nAg~~~~~~~~~~~~~~~~-~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~~sS~~~~~--~-----  150 (260)
T PRK12823         80 EAFGRIDVLINNVGGTIWAKPFEEYEEEQI-EAEIRRSLFPTLWCCRAVLPHMLAQG-GGAIVNVSSIATRG--I-----  150 (260)
T ss_pred             HHcCCCeEEEECCccccCCCChhhCChHHH-HHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEEcCccccC--C-----
Confidence                5899999997432       111122 3667888887765554    444555 57999999976542  0     


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCC---------CCCCccHHHH
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFIC---------PKFAGSVRSS  214 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~---------~~~~~~~~~~  214 (331)
                                       +..+|+.+|.+.+.+++.++.+.   ++++++++|+.++++...         .........+
T Consensus       151 -----------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~  213 (260)
T PRK12823        151 -----------------NRVPYSAAKGGVNALTASLAFEYAEHGIRVNAVAPGGTEAPPRRVPRNAAPQSEQEKAWYQQI  213 (260)
T ss_pred             -----------------CCCccHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccCCcchhhHHhhccccccccccHHHH
Confidence                             12369999999999999988765   899999999999997311         0001111112


Q ss_pred             HHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          215 LALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ....... ..+     ..+.+++|+++++++++....   .+..++++++
T Consensus       214 ~~~~~~~-~~~-----~~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~gg  257 (260)
T PRK12823        214 VDQTLDS-SLM-----KRYGTIDEQVAAILFLASDEASYITGTVLPVGGG  257 (260)
T ss_pred             HHHHhcc-CCc-----ccCCCHHHHHHHHHHHcCcccccccCcEEeecCC
Confidence            2111111 112     156689999999999987542   2446677554

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.89  E-value=6.9e-22  Score=167.93  Aligned_cols=218  Identities=18%  Similarity=0.151  Sum_probs=150.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCc-cccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNS-KDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      +|++|||||+|+||+++++.|+++|++|++++|+..    ... .....+..   ...++.++.+|+.|.+++.++++  
T Consensus         2 ~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~----~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~   74 (256)
T PRK12745          2 RPVALVTGGRRGIGLGIARALAAAGFDLAINDRPDD----EELAATQQELRA---LGVEVIFFPADVADLSAHEAMLDAA   74 (256)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCch----hHHHHHHHHHHh---cCCceEEEEecCCCHHHHHHHHHHH
Confidence            468999999999999999999999999999998752    111 11111111   12468899999999988777654  


Q ss_pred             -----CccEEEEecccCCCC--------CCChhhHHHHHHHHHHHHHHHHHHhc----CC-----ccEEEEecccceeec
Q 020104           82 -----GCTGVLHVATPVDFE--------DKEPEEVITQRAINGTLGILKSCLKS----GT-----VKRVVYTSSNAAVFY  139 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~--------~~~~~~~~~~~n~~~~~~l~~~~~~~----~~-----~~~~v~~SS~~~~~~  139 (331)
                           ++|+|||+|+.....        ..++ ...+++|+.++.++++++...    ..     ..++|++||...+..
T Consensus        75 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~  153 (256)
T PRK12745         75 QAAWGRIDCLVNNAGVGVKVRGDLLDLTPESF-DRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIMV  153 (256)
T ss_pred             HHhcCCCCEEEECCccCCCCCCChhhCCHHHH-HHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhccC
Confidence                 589999999864311        1223 367899999999998887542    10     457999999776531


Q ss_pred             CCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHH
Q 020104          140 NDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLA  216 (331)
Q Consensus       140 ~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~  216 (331)
                      .                      .+.+.|+.+|.+.+.+++.++.+   ++++++++||+.+.++......    .....
T Consensus       154 ~----------------------~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~----~~~~~  207 (256)
T PRK12745        154 S----------------------PNRGEYCISKAGLSMAAQLFAARLAEEGIGVYEVRPGLIKTDMTAPVT----AKYDA  207 (256)
T ss_pred             C----------------------CCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCCcCccccccc----hhHHh
Confidence            1                      12347999999999999988864   5899999999999887533211    11111


Q ss_pred             HHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          217 LILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       217 ~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      .........     ..+.+.+|+++++..++....   .+..|++++.
T Consensus       208 ~~~~~~~~~-----~~~~~~~d~a~~i~~l~~~~~~~~~G~~~~i~gg  250 (256)
T PRK12745        208 LIAKGLVPM-----PRWGEPEDVARAVAALASGDLPYSTGQAIHVDGG  250 (256)
T ss_pred             hhhhcCCCc-----CCCcCHHHHHHHHHHHhCCcccccCCCEEEECCC
Confidence            111111111     268899999999999886542   2446777653

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=99.89  E-value=7e-22  Score=166.78  Aligned_cols=220  Identities=20%  Similarity=0.176  Sum_probs=153.3

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHH
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      |..++|+||||||+|+||++++++|+++|++|++++|++     ...... ..+.   ....++.++.+|+.|++++.++
T Consensus         1 ~~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~-----~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~   72 (246)
T PRK05653          1 MSLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNE-----EAAEALAAELR---AAGGEARVLVFDVSDEAAVRAL   72 (246)
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCh-----hHHHHHHHHHH---hcCCceEEEEccCCCHHHHHHH
Confidence            545567999999999999999999999999999999987     222221 1111   1124678889999999888777


Q ss_pred             hc-------CccEEEEecccCCCCC---C--ChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCC
Q 020104           80 IA-------GCTGVLHVATPVDFED---K--EPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        80 ~~-------~~d~Vih~a~~~~~~~---~--~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~  143 (331)
                      ++       ++|+|||+++......   .  +.....++.|+.++.++++++.    +.+ .+++|++||..... +   
T Consensus        73 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-~~~ii~~ss~~~~~-~---  147 (246)
T PRK05653         73 IEAAVEAFGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKAR-YGRIVNISSVSGVT-G---  147 (246)
T ss_pred             HHHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEECcHHhcc-C---
Confidence            65       4699999998654211   1  1123678899999999988884    445 68999999965432 1   


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhC
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILG  220 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~  220 (331)
                                        ..+...|+.+|...+.+++.++++   .+++++++||+.++|+....    .......... 
T Consensus       148 ------------------~~~~~~y~~sk~~~~~~~~~l~~~~~~~~i~~~~i~pg~~~~~~~~~----~~~~~~~~~~-  204 (246)
T PRK05653        148 ------------------NPGQTNYSAAKAGVIGFTKALALELASRGITVNAVAPGFIDTDMTEG----LPEEVKAEIL-  204 (246)
T ss_pred             ------------------CCCCcHhHhHHHHHHHHHHHHHHHHhhcCeEEEEEEeCCcCCcchhh----hhHHHHHHHH-
Confidence                              012347999999999998887764   37999999999999986432    0111111111 


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCCCC---CceEEEecc
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYPDA---KGRYICSSH  261 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~---~~~~~~~~~  261 (331)
                      .....     ..+++.+|+++++..++.....   +..|+++++
T Consensus       205 ~~~~~-----~~~~~~~dva~~~~~~~~~~~~~~~g~~~~~~gg  243 (246)
T PRK05653        205 KEIPL-----GRLGQPEEVANAVAFLASDAASYITGQVIPVNGG  243 (246)
T ss_pred             hcCCC-----CCCcCHHHHHHHHHHHcCchhcCccCCEEEeCCC
Confidence            11111     3788999999999999875332   346666553

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=99.89  E-value=5.9e-22  Score=168.44  Aligned_cols=220  Identities=15%  Similarity=0.160  Sum_probs=153.3

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+++++|||||+|+||.++++.|+++|++|++++|+.     .....+..  ++   ...+.++.+|+.|.+++.++++ 
T Consensus         4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~-----~~~~~~~~--~~---~~~~~~~~~D~~~~~~~~~~~~~   73 (257)
T PRK07067          4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKP-----ARARLAAL--EI---GPAAIAVSLDVTRQDSIDRIVAA   73 (257)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCH-----HHHHHHHH--Hh---CCceEEEEccCCCHHHHHHHHHH
Confidence            3457899999999999999999999999999999987     22222111  11   1357889999999988887765 


Q ss_pred             ------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhcC----CccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKSG----TVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|++||+|+.....      .+++ +..+++|+.++.++++++....    .-.++|++||..... +     
T Consensus        74 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~-~-----  146 (257)
T PRK07067         74 AVERFGGIDILFNNAALFDMAPILDISRDSY-DRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRR-G-----  146 (257)
T ss_pred             HHHHcCCCCEEEECCCcCCCCCcccCCHHHH-HHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCC-C-----
Confidence                  589999999864321      1223 3778999999999999986431    124899999964321 1     


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHH-------HHH
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVR-------SSL  215 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~-------~~~  215 (331)
                                      .++...|+.+|.+.+.+++.++.+   +++++++++|+.++++...... ..+.       ...
T Consensus       147 ----------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~-~~~~~~~~~~~~~~  209 (257)
T PRK07067        147 ----------------EALVSHYCATKAAVISYTQSAALALIRHGINVNAIAPGVVDTPMWDQVD-ALFARYENRPPGEK  209 (257)
T ss_pred             ----------------CCCCchhhhhHHHHHHHHHHHHHHhcccCeEEEEEeeCcccchhhhhhh-hhhhhccCCCHHHH
Confidence                            122457999999999999888764   5899999999999997532110 0000       000


Q ss_pred             HHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          216 ALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ....+...++     ..+++.+|+|+++.+++..+.   .+..++++++
T Consensus       210 ~~~~~~~~~~-----~~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~gg  253 (257)
T PRK07067        210 KRLVGEAVPL-----GRMGVPDDLTGMALFLASADADYIVAQTYNVDGG  253 (257)
T ss_pred             HHHHhhcCCC-----CCccCHHHHHHHHHHHhCcccccccCcEEeecCC
Confidence            0011111112     479999999999999998653   3557787653

>KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism]

Probab=99.89  E-value=9.2e-22  Score=173.32  Aligned_cols=273  Identities=22%  Similarity=0.282  Sum_probs=182.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCC---CeEEEEecCCCCcccCCccccc---------ccc-CCCCCCCcEEEEeCCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHG---YSVTTTVRSELDPEHRNSKDLS---------FLK-NLPGASERLRIFHADL   70 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~---------~~~-~~~~~~~~~~~~~~D~   70 (331)
                      .+|+|||||||||+|.-+++.|+..-   .+++++.|.+.  ..+..+++.         .+. ..+....++.++.||+
T Consensus        11 ~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~--g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi   88 (467)
T KOG1221|consen   11 KNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKK--GKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDI   88 (467)
T ss_pred             CCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCC--CCCHHHHHHHHHhhhHHHHHHhhCccceecceeccccc
Confidence            35799999999999999999999752   47899999762  111111111         111 1233457888999999


Q ss_pred             CCC------ccHHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecC-CCC
Q 020104           71 SHP------DGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYN-DKD  143 (331)
Q Consensus        71 ~~~------~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~-~~~  143 (331)
                      .++      .+++.+.+++|+|||+||.+.+.  ++.+....+|..|++++++.|++....+-++|+||..+--.. .-.
T Consensus        89 ~~~~LGis~~D~~~l~~eV~ivih~AAtvrFd--e~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n~~~~~i~  166 (467)
T KOG1221|consen   89 SEPDLGISESDLRTLADEVNIVIHSAATVRFD--EPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSNCNVGHIE  166 (467)
T ss_pred             cCcccCCChHHHHHHHhcCCEEEEeeeeeccc--hhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhheeccccccc
Confidence            876      35555667999999999988765  455578899999999999999999778999999997665211 112


Q ss_pred             CCcccCCCCCC------------hhhh----h-hcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCC
Q 020104          144 VDMMDETFWSD------------VDYI----R-KLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPK  206 (331)
Q Consensus       144 ~~~~~E~~~~~------------~~~~----~-~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~  206 (331)
                      +.++.+...++            .+..    . -...+.|.|..+|..+|.++.+.+  .++|.+|+||+.|......+ 
T Consensus       167 E~~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~--~~lPivIiRPsiI~st~~EP-  243 (467)
T KOG1221|consen  167 EKPYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEA--ENLPLVIIRPSIITSTYKEP-  243 (467)
T ss_pred             ccccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhc--cCCCeEEEcCCceeccccCC-
Confidence            22322222111            1111    1 112356789999999999999865  47999999999999876544 


Q ss_pred             CCccHHHHH---HHH--hCCC---cccccCCC-ccceeHHHHHHHHHHhhcC--CCC----CceEEEec---cccCHHHH
Q 020104          207 FAGSVRSSL---ALI--LGNR---EEYGFLLN-TSMVHVDDVARAHIFLLEY--PDA----KGRYICSS---HTLTIQEM  268 (331)
Q Consensus       207 ~~~~~~~~~---~~~--~~~~---~~~~~~~~-~~~i~v~D~a~~~~~~~~~--~~~----~~~~~~~~---~~~s~~e~  268 (331)
                      ++.|+....   ..+  .|.+   ..+.+... .++|.+|.++.+++.+...  ...    ..+||+++   .++++.++
T Consensus       244 ~pGWidn~~gp~g~i~g~gkGvlr~~~~d~~~~adiIPvD~vvN~~ia~~~~~~~~~~~~~~~IY~~tss~~Np~t~~~~  323 (467)
T KOG1221|consen  244 FPGWIDNLNGPDGVIIGYGKGVLRCFLVDPKAVADIIPVDMVVNAMIASAWQHAGNSKEKTPPIYHLTSSNDNPVTWGDF  323 (467)
T ss_pred             CCCccccCCCCceEEEEeccceEEEEEEccccccceeeHHHHHHHHHHHHHHHhccCCCCCCcEEEecccccCcccHHHH
Confidence            233322211   000  1111   11112222 5999999999999977632  111    33899743   46999999


Q ss_pred             HHHHHhhCCCCCCCC
Q 020104          269 AEFLSAKYPEYPIPT  283 (331)
Q Consensus       269 ~~~i~~~~~~~~~~~  283 (331)
                      .+...+.+...++..
T Consensus       324 ~e~~~~~~~~~Pl~~  338 (467)
T KOG1221|consen  324 IELALRYFEKIPLEK  338 (467)
T ss_pred             HHHHHHhcccCCccc
Confidence            999999776444443

>PRK07774 short chain dehydrogenase; Provisional

Probab=99.89  E-value=9e-22  Score=166.63  Aligned_cols=214  Identities=17%  Similarity=0.160  Sum_probs=151.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      ++|+++||||+|+||++++++|+++|++|++++|+.     .....+ ..+..   ...++..+.+|+.|.+++.++++ 
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~   76 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEALAREGASVVVADINA-----EGAERVAKQIVA---DGGTAIAVQVDVSDPDSAKAMADA   76 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHH
Confidence            457899999999999999999999999999999986     222121 11111   11356788999999988877664 


Q ss_pred             ------CccEEEEecccCCCC------CC--ChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCCCC
Q 020104           82 ------GCTGVLHVATPVDFE------DK--EPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~------~~--~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~  143 (331)
                            ++|+|||+|+.....      ..  +.....+++|+.++.++++++...    + .+++|++||...+.     
T Consensus        77 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~-----  150 (250)
T PRK07774         77 TVSAFGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRG-GGAIVNQSSTAAWL-----  150 (250)
T ss_pred             HHHHhCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhC-CcEEEEEecccccC-----
Confidence                  589999999964311      11  112367889999999999988753    3 46999999987652     


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhC
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILG  220 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~  220 (331)
                                          +.+.|+.+|.+.+.+++.+++++   ++++++++||.+..+......+..+  ......+
T Consensus       151 --------------------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~--~~~~~~~  208 (250)
T PRK07774        151 --------------------YSNFYGLAKVGLNGLTQQLARELGGMNIRVNAIAPGPIDTEATRTVTPKEF--VADMVKG  208 (250)
T ss_pred             --------------------CccccHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccCccccccCCHHH--HHHHHhc
Confidence                                12469999999999999988765   7999999999988775432222111  1111122


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEec
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSS  260 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~  260 (331)
                      .+  ..     .+.+++|++++++.++....   .+..|++++
T Consensus       209 ~~--~~-----~~~~~~d~a~~~~~~~~~~~~~~~g~~~~v~~  244 (250)
T PRK07774        209 IP--LS-----RMGTPEDLVGMCLFLLSDEASWITGQIFNVDG  244 (250)
T ss_pred             CC--CC-----CCcCHHHHHHHHHHHhChhhhCcCCCEEEECC
Confidence            21  11     35679999999999987642   345778754

>PRK06138 short chain dehydrogenase; Provisional

Probab=99.89  E-value=9e-22  Score=166.83  Aligned_cols=222  Identities=16%  Similarity=0.164  Sum_probs=152.4

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHH
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      |...+++++||||+|+||++++++|+++|++|+++.|+.     +.... ...+.    ...++.++.+|+.|++++.++
T Consensus         1 m~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~-----~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~   71 (252)
T PRK06138          1 MRLAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDA-----EAAERVAAAIA----AGGRAFARQGDVGSAEAVEAL   71 (252)
T ss_pred             CCCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCH-----HHHHHHHHHHh----cCCeEEEEEcCCCCHHHHHHH
Confidence            555678999999999999999999999999999999986     22211 11111    124578999999999988877


Q ss_pred             hc-------CccEEEEecccCCCC---CCCh--hhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCC
Q 020104           80 IA-------GCTGVLHVATPVDFE---DKEP--EEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        80 ~~-------~~d~Vih~a~~~~~~---~~~~--~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~  143 (331)
                      ++       ++|+|||+++.....   ..+.  ....+++|+.++.++.+++    ++.+ .+++|++||.......   
T Consensus        72 ~~~i~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~ii~~sS~~~~~~~---  147 (252)
T PRK06138         72 VDFVAARWGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQG-GGSIVNTASQLALAGG---  147 (252)
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcC-CeEEEEECChhhccCC---
Confidence            64       689999999865421   1111  1256889999987766655    4555 6799999997654311   


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCcc--HHHHHHHH
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGS--VRSSLALI  218 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~--~~~~~~~~  218 (331)
                                         +..++|+.+|.+.+.+++.++.+.   +++++++||+.++++.........  ........
T Consensus       148 -------------------~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~  208 (252)
T PRK06138        148 -------------------RGRAAYVASKGAIASLTRAMALDHATDGIRVNAVAPGTIDTPYFRRIFARHADPEALREAL  208 (252)
T ss_pred             -------------------CCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEECCccCcchhhhhccccChHHHHHHH
Confidence                               123479999999999999987665   899999999999988533211100  00011111


Q ss_pred             hCCCcccccCCCccceeHHHHHHHHHHhhcCCCC--Cc-eEEEec
Q 020104          219 LGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDA--KG-RYICSS  260 (331)
Q Consensus       219 ~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~--~~-~~~~~~  260 (331)
                      ... ...     ..+++++|+++++++++.++..  .| .+.+.+
T Consensus       209 ~~~-~~~-----~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~  247 (252)
T PRK06138        209 RAR-HPM-----NRFGTAEEVAQAALFLASDESSFATGTTLVVDG  247 (252)
T ss_pred             Hhc-CCC-----CCCcCHHHHHHHHHHHcCchhcCccCCEEEECC
Confidence            111 111     1478999999999999987542  23 445544

>PRK12746 short chain dehydrogenase; Provisional

Probab=99.89  E-value=1.4e-21  Score=165.78  Aligned_cols=224  Identities=17%  Similarity=0.178  Sum_probs=151.7

Q ss_pred             CCCC-CceEEEecCcchhHHHHHHHHHHCCCeEEEE-ecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHH
Q 020104            1 MEEG-KGRVCVTGGTGFIASWLIMRLLDHGYSVTTT-VRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDA   78 (331)
Q Consensus         1 M~~~-~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~   78 (331)
                      |..+ +++|+||||+|+||++++++|+++|++|.++ .|+.     ......  ...+......+.++.+|+.|.+++.+
T Consensus         1 ~~~~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~-----~~~~~~--~~~~~~~~~~~~~~~~D~~d~~~i~~   73 (254)
T PRK12746          1 MKNLDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNK-----QAADET--IREIESNGGKAFLIEADLNSIDGVKK   73 (254)
T ss_pred             CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCH-----HHHHHH--HHHHHhcCCcEEEEEcCcCCHHHHHH
Confidence            5443 3789999999999999999999999999875 4554     111111  11111112457889999999998877


Q ss_pred             Hhc-------------CccEEEEecccCCCCC-C--C--hhhHHHHHHHHHHHHHHHHHHhc-CCccEEEEecccceeec
Q 020104           79 AIA-------------GCTGVLHVATPVDFED-K--E--PEEVITQRAINGTLGILKSCLKS-GTVKRVVYTSSNAAVFY  139 (331)
Q Consensus        79 ~~~-------------~~d~Vih~a~~~~~~~-~--~--~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~  139 (331)
                      +++             ++|+|||+|+...... .  +  .....+++|+.++.++++++.+. ....++|++||..++..
T Consensus        74 ~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~~  153 (254)
T PRK12746         74 LVEQLKNELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRLG  153 (254)
T ss_pred             HHHHHHHHhccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcCC
Confidence            665             4899999998654211 1  1  11366779999999999998864 11358999999876531


Q ss_pred             CCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHH
Q 020104          140 NDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLA  216 (331)
Q Consensus       140 ~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~  216 (331)
                                            .++.+.|+.+|.+.+.+++.++.+   .++++++++|+.++++-.......  .....
T Consensus       154 ----------------------~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~--~~~~~  209 (254)
T PRK12746        154 ----------------------FTGSIAYGLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDINAKLLDD--PEIRN  209 (254)
T ss_pred             ----------------------CCCCcchHhhHHHHHHHHHHHHHHHhhcCcEEEEEEECCccCcchhhhccC--hhHHH
Confidence                                  122346999999999998887764   479999999999988753221110  00111


Q ss_pred             HHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          217 LILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       217 ~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      .... ...+     ..+++++|+++++..++..+.   .+..|++.+.
T Consensus       210 ~~~~-~~~~-----~~~~~~~dva~~~~~l~~~~~~~~~g~~~~i~~~  251 (254)
T PRK12746        210 FATN-SSVF-----GRIGQVEDIADAVAFLASSDSRWVTGQIIDVSGG  251 (254)
T ss_pred             HHHh-cCCc-----CCCCCHHHHHHHHHHHcCcccCCcCCCEEEeCCC
Confidence            1111 1122     267899999999998887643   3557777543

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=99.89  E-value=8.6e-22  Score=166.45  Aligned_cols=217  Identities=13%  Similarity=0.125  Sum_probs=150.1

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG--   82 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--   82 (331)
                      +++++||||+|+||++++++|+++|++|+++.+..+    ...+.+  ..++.....++.++.+|+.|++++.+++++  
T Consensus         6 ~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~----~~~~~~--~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~   79 (247)
T PRK12935          6 GKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSK----EAAENL--VNELGKEGHDVYAVQADVSKVEDANRLVEEAV   79 (247)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcH----HHHHHH--HHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH
Confidence            478999999999999999999999999987655431    111111  111111224688899999999988877753  


Q ss_pred             -----ccEEEEecccCCCCC------CChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCCcc
Q 020104           83 -----CTGVLHVATPVDFED------KEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        83 -----~d~Vih~a~~~~~~~------~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                           +|+|||+|+......      .++ ++.+++|+.++.++++++..    .+ ..++|++||...+...       
T Consensus        80 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~~~-------  150 (247)
T PRK12935         80 NHFGKVDILVNNAGITRDRTFKKLNREDW-ERVIDVNLSSVFNTTSAVLPYITEAE-EGRIISISSIIGQAGG-------  150 (247)
T ss_pred             HHcCCCCEEEECCCCCCCCChhhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEcchhhcCCC-------
Confidence                 799999998654221      223 37889999999999998874    33 4699999996544211       


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcc
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREE  224 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~  224 (331)
                                     ++...|+.+|.+.+.+++.+..+.   ++++++++|+.+.++.... .+.   ......... ..
T Consensus       151 ---------------~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~-~~~---~~~~~~~~~-~~  210 (247)
T PRK12935        151 ---------------FGQTNYSAAKAGMLGFTKSLALELAKTNVTVNAICPGFIDTEMVAE-VPE---EVRQKIVAK-IP  210 (247)
T ss_pred             ---------------CCCcchHHHHHHHHHHHHHHHHHHHHcCcEEEEEEeCCCcChhhhh-ccH---HHHHHHHHh-CC
Confidence                           123479999999999888877654   8999999999997653221 111   111111111 11


Q ss_pred             cccCCCccceeHHHHHHHHHHhhcCC--CCCceEEEecc
Q 020104          225 YGFLLNTSMVHVDDVARAHIFLLEYP--DAKGRYICSSH  261 (331)
Q Consensus       225 ~~~~~~~~~i~v~D~a~~~~~~~~~~--~~~~~~~~~~~  261 (331)
                           .+.++|++|++++++++++..  ..++.|+++++
T Consensus       211 -----~~~~~~~edva~~~~~~~~~~~~~~g~~~~i~~g  244 (247)
T PRK12935        211 -----KKRFGQADEIAKGVVYLCRDGAYITGQQLNINGG  244 (247)
T ss_pred             -----CCCCcCHHHHHHHHHHHcCcccCccCCEEEeCCC
Confidence                 137899999999999998754  24567887654

>PRK06182 short chain dehydrogenase; Validated

Probab=99.89  E-value=1.5e-21  Score=167.33  Aligned_cols=214  Identities=18%  Similarity=0.140  Sum_probs=148.2

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      +++|+||||+|+||++++++|+++|++|++++|+.     +.   +..+..     .++.++.+|+.|.+++.++++   
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~-----~~---l~~~~~-----~~~~~~~~Dv~~~~~~~~~~~~~~   69 (273)
T PRK06182          3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRV-----DK---MEDLAS-----LGVHPLSLDVTDEASIKAAVDTII   69 (273)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH-----HH---HHHHHh-----CCCeEEEeeCCCHHHHHHHHHHHH
Confidence            57899999999999999999999999999999987     22   222211     357889999999998888775   


Q ss_pred             ----CccEEEEecccCCCC------CCChhhHHHHHHHHHH----HHHHHHHHhcCCccEEEEecccceeecCCCCCCcc
Q 020104           82 ----GCTGVLHVATPVDFE------DKEPEEVITQRAINGT----LGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 ----~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~----~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                          ++|+|||+|+.....      ..++ +..+++|+.++    ..+++.+++.+ ..++|++||.....+.       
T Consensus        70 ~~~~~id~li~~ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~~~~~~l~~~~~~~-~g~iv~isS~~~~~~~-------  140 (273)
T PRK06182         70 AEEGRIDVLVNNAGYGSYGAIEDVPIDEA-RRQFEVNLFGAARLTQLVLPHMRAQR-SGRIINISSMGGKIYT-------  140 (273)
T ss_pred             HhcCCCCEEEECCCcCCCCchhhCCHHHH-HHHHhHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcchhhcCCC-------
Confidence                689999999865422      1123 37788998884    55555666666 6799999996543111       


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCC--------ccHHH---
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFA--------GSVRS---  213 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~--------~~~~~---  213 (331)
                                     +....|+.+|.+.+.+.+.++.+   ++++++++|||.+.++.......        .....   
T Consensus       141 ---------------~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~  205 (273)
T PRK06182        141 ---------------PLGAWYHATKFALEGFSDALRLEVAPFGIDVVVIEPGGIKTEWGDIAADHLLKTSGNGAYAEQAQ  205 (273)
T ss_pred             ---------------CCccHhHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCcccccchhhhhhhcccccccchHHHHH
Confidence                           11236999999999988776643   48999999999998874311000        00000   


Q ss_pred             -HHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCCCCceEEEecc
Q 020104          214 -SLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDAKGRYICSSH  261 (331)
Q Consensus       214 -~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~~~  261 (331)
                       ....+... .     ....+...+|+|++++.++........|+++..
T Consensus       206 ~~~~~~~~~-~-----~~~~~~~~~~vA~~i~~~~~~~~~~~~~~~g~~  248 (273)
T PRK06182        206 AVAASMRST-Y-----GSGRLSDPSVIADAISKAVTARRPKTRYAVGFG  248 (273)
T ss_pred             HHHHHHHHh-h-----ccccCCCHHHHHHHHHHHHhCCCCCceeecCcc
Confidence             00000000 0     113678999999999999987655567776543

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.88  E-value=2.5e-21  Score=163.98  Aligned_cols=221  Identities=18%  Similarity=0.153  Sum_probs=152.2

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHH
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      |...+++||||||+|+||.+++++|+++|++|++++|++     .....+ ..+..    ..++.++.+|+.|++++..+
T Consensus         1 ~~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~   71 (251)
T PRK07231          1 MRLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNE-----EAAERVAAEILA----GGRAIAVAADVSDEADVEAA   71 (251)
T ss_pred             CCcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHhc----CCeEEEEECCCCCHHHHHHH
Confidence            555678999999999999999999999999999999987     222221 11111    24578999999999999877


Q ss_pred             hc-------CccEEEEecccCCCC-------CCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCC
Q 020104           80 IA-------GCTGVLHVATPVDFE-------DKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYND  141 (331)
Q Consensus        80 ~~-------~~d~Vih~a~~~~~~-------~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~  141 (331)
                      ++       ++|+|||+|+.....       ..++ ...+++|+.++.++++.+..    .+ .++||++||...+..  
T Consensus        72 ~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~~--  147 (251)
T PRK07231         72 VAAALERFGSVDILVNNAGTTHRNGPLLDVDEAEF-DRIFAVNVKSPYLWTQAAVPAMRGEG-GGAIVNVASTAGLRP--  147 (251)
T ss_pred             HHHHHHHhCCCCEEEECCCCCCCCCChhhCCHHHH-HHHHhhhhHHHHHHHHHHHHHHHhcC-CcEEEEEcChhhcCC--
Confidence            64       579999999863311       1122 36788999987777776653    44 679999999876531  


Q ss_pred             CCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHH
Q 020104          142 KDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALI  218 (331)
Q Consensus       142 ~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~  218 (331)
                                          .++...|+.+|...+.+++.++.+.   +++++.++|+.+.++.................
T Consensus       148 --------------------~~~~~~y~~sk~~~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~  207 (251)
T PRK07231        148 --------------------RPGLGWYNASKGAVITLTKALAAELGPDKIRVNAVAPVVVETGLLEAFMGEPTPENRAKF  207 (251)
T ss_pred             --------------------CCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEECccCCCcchhhhcccChHHHHHH
Confidence                                1224579999999999988887653   79999999999976642221110000111111


Q ss_pred             hCCCcccccCCCccceeHHHHHHHHHHhhcCCC--CCce-EEEec
Q 020104          219 LGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKGR-YICSS  260 (331)
Q Consensus       219 ~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~  260 (331)
                      ... ...     ..+++++|+|++++.++....  ..|. +.+.+
T Consensus       208 ~~~-~~~-----~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~g  246 (251)
T PRK07231        208 LAT-IPL-----GRLGTPEDIANAALFLASDEASWITGVTLVVDG  246 (251)
T ss_pred             hcC-CCC-----CCCcCHHHHHHHHHHHhCccccCCCCCeEEECC
Confidence            111 111     367899999999999997543  2344 45654

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.88  E-value=1.5e-21  Score=165.41  Aligned_cols=225  Identities=14%  Similarity=0.053  Sum_probs=151.5

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      ..+++||||||+|+||++++++|+++|++|++..|+...   ........+.+   ...++..+.+|+.+.+++..+++ 
T Consensus         4 ~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~   77 (252)
T PRK06077          4 LKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAE---EMNETLKMVKE---NGGEGIGVLADVSTREGCETLAKA   77 (252)
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChH---HHHHHHHHHHH---cCCeeEEEEeccCCHHHHHHHHHH
Confidence            345799999999999999999999999999887765410   11111111111   12356788999999988777654 


Q ss_pred             ------CccEEEEecccCCCCC---CCh--hhHHHHHHHHHHHHHHHHHHhc-CCccEEEEecccceeecCCCCCCcccC
Q 020104           82 ------GCTGVLHVATPVDFED---KEP--EEVITQRAINGTLGILKSCLKS-GTVKRVVYTSSNAAVFYNDKDVDMMDE  149 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~~---~~~--~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~~~~~E  149 (331)
                            ++|+|||+||......   .+.  ....+++|+.++.++++++.+. ....++|++||...+..          
T Consensus        78 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~----------  147 (252)
T PRK06077         78 TIDRYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIRP----------  147 (252)
T ss_pred             HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccCC----------
Confidence                  5899999998533211   111  1367889999999999988764 11358999999776521          


Q ss_pred             CCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc--CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCccccc
Q 020104          150 TFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH--GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGF  227 (331)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (331)
                                  .++.+.|+.+|...+.+++.++.+.  ++++.+++|+.+.++.... ..................   
T Consensus       148 ------------~~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~v~~v~Pg~i~t~~~~~-~~~~~~~~~~~~~~~~~~---  211 (252)
T PRK06077        148 ------------AYGLSIYGAMKAAVINLTKYLALELAPKIRVNAIAPGFVKTKLGES-LFKVLGMSEKEFAEKFTL---  211 (252)
T ss_pred             ------------CCCchHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeCCccChHHHh-hhhcccccHHHHHHhcCc---
Confidence                        1234579999999999999988775  6899999999998764211 000000000000000011   


Q ss_pred             CCCccceeHHHHHHHHHHhhcCCCC-CceEEEecc
Q 020104          228 LLNTSMVHVDDVARAHIFLLEYPDA-KGRYICSSH  261 (331)
Q Consensus       228 ~~~~~~i~v~D~a~~~~~~~~~~~~-~~~~~~~~~  261 (331)
                        ...+++++|+|++++.++..+.. ++.|++++.
T Consensus       212 --~~~~~~~~dva~~~~~~~~~~~~~g~~~~i~~g  244 (252)
T PRK06077        212 --MGKILDPEEVAEFVAAILKIESITGQVFVLDSG  244 (252)
T ss_pred             --CCCCCCHHHHHHHHHHHhCccccCCCeEEecCC
Confidence              13789999999999999976544 557887543

>PRK08219 short chain dehydrogenase; Provisional

Probab=99.88  E-value=1.5e-21  Score=162.82  Aligned_cols=205  Identities=20%  Similarity=0.177  Sum_probs=143.2

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      ||++|||||+|+||+++++.|+++ ++|++++|+.     ...+.+..  ..    ++++++.+|+.|.+++.+++.   
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~-----~~~~~~~~--~~----~~~~~~~~D~~~~~~~~~~~~~~~   70 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPA-----ERLDELAA--EL----PGATPFPVDLTDPEAIAAAVEQLG   70 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCH-----HHHHHHHH--Hh----ccceEEecCCCCHHHHHHHHHhcC
Confidence            578999999999999999999999 9999999986     22222111  11    357889999999999988886   


Q ss_pred             CccEEEEecccCCCCC---CCh--hhHHHHHHHHHH----HHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCC
Q 020104           82 GCTGVLHVATPVDFED---KEP--EEVITQRAINGT----LGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFW  152 (331)
Q Consensus        82 ~~d~Vih~a~~~~~~~---~~~--~~~~~~~n~~~~----~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~  152 (331)
                      ++|+|||+++......   .++  ....+++|+.+.    .++++++++.+  +++|++||...+...            
T Consensus        71 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~v~~ss~~~~~~~------------  136 (227)
T PRK08219         71 RLDVLVHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAH--GHVVFINSGAGLRAN------------  136 (227)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CeEEEEcchHhcCcC------------
Confidence            5999999998654221   111  125678888884    44444444444  699999997765311            


Q ss_pred             CChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc-C-CcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCC
Q 020104          153 SDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH-G-LDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLN  230 (331)
Q Consensus       153 ~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~-~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (331)
                                ++...|+.+|...+.+++.++.+. + ++++.++|+.+.++....        ... ..+.  .+   ..
T Consensus       137 ----------~~~~~y~~~K~a~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~--------~~~-~~~~--~~---~~  192 (227)
T PRK08219        137 ----------PGWGSYAASKFALRALADALREEEPGNVRVTSVHPGRTDTDMQRG--------LVA-QEGG--EY---DP  192 (227)
T ss_pred             ----------CCCchHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCccchHhhh--------hhh-hhcc--cc---CC
Confidence                      123479999999999888876543 4 899999998776542111        000 0111  11   11


Q ss_pred             ccceeHHHHHHHHHHhhcCCCCCceEEEe
Q 020104          231 TSMVHVDDVARAHIFLLEYPDAKGRYICS  259 (331)
Q Consensus       231 ~~~i~v~D~a~~~~~~~~~~~~~~~~~~~  259 (331)
                      ..+++++|++++++++++++..+.++++.
T Consensus       193 ~~~~~~~dva~~~~~~l~~~~~~~~~~~~  221 (227)
T PRK08219        193 ERYLRPETVAKAVRFAVDAPPDAHITEVV  221 (227)
T ss_pred             CCCCCHHHHHHHHHHHHcCCCCCccceEE
Confidence            36899999999999999887666677654

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=99.88  E-value=2.3e-21  Score=164.63  Aligned_cols=217  Identities=17%  Similarity=0.143  Sum_probs=151.3

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      +|+||||||+|+||++++++|+++|++|++++|+.     ..... ...+..   ...++..+.+|+.|.+++.++++  
T Consensus        10 ~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~~~i~~---~~~~~~~~~~D~~~~~~~~~~~~~~   81 (255)
T PRK07523         10 GRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDP-----AKLAAAAESLKG---QGLSAHALAFDVTDHDAVRAAIDAF   81 (255)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCH-----HHHHHHHHHHHh---cCceEEEEEccCCCHHHHHHHHHHH
Confidence            57999999999999999999999999999999986     22111 111111   12357889999999998888775  


Q ss_pred             -----CccEEEEecccCCCCC--C---ChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCCCCCCcc
Q 020104           82 -----GCTGVLHVATPVDFED--K---EPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~~--~---~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                           .+|+|||+|+......  .   +..+..+++|+.++.++++++.+.    + .+++|++||.....  .      
T Consensus        82 ~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~g~iv~iss~~~~~--~------  152 (255)
T PRK07523         82 EAEIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARG-AGKIINIASVQSAL--A------  152 (255)
T ss_pred             HHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CeEEEEEccchhcc--C------
Confidence                 4899999998653211  1   111367789999999999988753    4 57999999965431  0      


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcc
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREE  224 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~  224 (331)
                                    .++...|+.+|.+.+.+++.++.+   ++++++++||+.+.++........  ......+. ....
T Consensus       153 --------------~~~~~~y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~--~~~~~~~~-~~~~  215 (255)
T PRK07523        153 --------------RPGIAPYTATKGAVGNLTKGMATDWAKHGLQCNAIAPGYFDTPLNAALVAD--PEFSAWLE-KRTP  215 (255)
T ss_pred             --------------CCCCccHHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcccCchhhhhccC--HHHHHHHH-hcCC
Confidence                          122457999999999999988763   489999999999998853221110  11111111 1112


Q ss_pred             cccCCCccceeHHHHHHHHHHhhcCCCC---CceEEEec
Q 020104          225 YGFLLNTSMVHVDDVARAHIFLLEYPDA---KGRYICSS  260 (331)
Q Consensus       225 ~~~~~~~~~i~v~D~a~~~~~~~~~~~~---~~~~~~~~  260 (331)
                      .     ..+.+++|+|+++++++.....   +..+++++
T Consensus       216 ~-----~~~~~~~dva~~~~~l~~~~~~~~~G~~i~~~g  249 (255)
T PRK07523        216 A-----GRWGKVEELVGACVFLASDASSFVNGHVLYVDG  249 (255)
T ss_pred             C-----CCCcCHHHHHHHHHHHcCchhcCccCcEEEECC
Confidence            2     2678999999999999975432   34566654

>PRK12829 short chain dehydrogenase; Provisional

Probab=99.88  E-value=5.4e-22  Score=169.37  Aligned_cols=218  Identities=21%  Similarity=0.209  Sum_probs=147.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      +++++|||||+|+||++++++|+++|++|++++|+.     +....+..  ....  .++.++.+|+.|++++.++++  
T Consensus        10 ~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~-----~~~~~~~~--~~~~--~~~~~~~~D~~~~~~~~~~~~~~   80 (264)
T PRK12829         10 DGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSE-----AALAATAA--RLPG--AKVTATVADVADPAQVERVFDTA   80 (264)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHH--HHhc--CceEEEEccCCCHHHHHHHHHHH
Confidence            357999999999999999999999999999999986     22222111  1111  256889999999988877664  


Q ss_pred             -----CccEEEEecccCCC-------CCCChhhHHHHHHHHHHHHHHHHHH----hcCCc-cEEEEecccceeecCCCCC
Q 020104           82 -----GCTGVLHVATPVDF-------EDKEPEEVITQRAINGTLGILKSCL----KSGTV-KRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~-~~~v~~SS~~~~~~~~~~~  144 (331)
                           ++|+|||+|+....       ..+++ ...++.|+.++.++++++.    ..+ . ++++++||..... +    
T Consensus        81 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~-~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~~vv~~ss~~~~~-~----  153 (264)
T PRK12829         81 VERFGGLDVLVNNAGIAGPTGGIDEITPEQW-EQTLAVNLNGQFYFARAAVPLLKASG-HGGVIIALSSVAGRL-G----  153 (264)
T ss_pred             HHHhCCCCEEEECCCCCCCCCCcccCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhCC-CCeEEEEeccccccc-C----
Confidence                 68999999986521       11123 3788999999999888774    333 3 5788888754321 1    


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCc-------cHHHH
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAG-------SVRSS  214 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~-------~~~~~  214 (331)
                                       .++...|+.+|...|.+++.++.+.   +++++++||+.++|+........       .....
T Consensus       154 -----------------~~~~~~y~~~K~a~~~~~~~l~~~~~~~~i~~~~l~pg~v~~~~~~~~~~~~~~~~~~~~~~~  216 (264)
T PRK12829        154 -----------------YPGRTPYAASKWAVVGLVKSLAIELGPLGIRVNAILPGIVRGPRMRRVIEARAQQLGIGLDEM  216 (264)
T ss_pred             -----------------CCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcCChHHHHHhhhhhhccCCChhHH
Confidence                             0113369999999999999887653   79999999999999864321110       00000


Q ss_pred             HHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEec
Q 020104          215 LALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSS  260 (331)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~  260 (331)
                      ..... ...     ....+++++|+++++..++....   .+..|++++
T Consensus       217 ~~~~~-~~~-----~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~i~~  259 (264)
T PRK12829        217 EQEYL-EKI-----SLGRMVEPEDIAATALFLASPAARYITGQAISVDG  259 (264)
T ss_pred             HHHHH-hcC-----CCCCCCCHHHHHHHHHHHcCccccCccCcEEEeCC
Confidence            00000 000     11368999999999998886432   244667655

>PRK12828 short chain dehydrogenase; Provisional

Probab=99.88  E-value=2.6e-21  Score=162.61  Aligned_cols=206  Identities=22%  Similarity=0.220  Sum_probs=147.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      ++|+||||||+|+||+++++.|+++|++|++++|+.     .+... ...+..     .+++.+.+|+.|.+++.++++ 
T Consensus         6 ~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~-----~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~   75 (239)
T PRK12828          6 QGKVVAITGGFGGLGRATAAWLAARGARVALIGRGA-----APLSQTLPGVPA-----DALRIGGIDLVDPQAARRAVDE   75 (239)
T ss_pred             CCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCCh-----HhHHHHHHHHhh-----cCceEEEeecCCHHHHHHHHHH
Confidence            457999999999999999999999999999999987     22111 111211     346778899999988877765 


Q ss_pred             ------CccEEEEecccCCCC---CCCh--hhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCc
Q 020104           82 ------GCTGVLHVATPVDFE---DKEP--EEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~---~~~~--~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                            ++|+|||+++.....   ..++  ..+.++.|+.++.++++++.    +.+ .+++|++||...+...      
T Consensus        76 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~~~~------  148 (239)
T PRK12828         76 VNRQFGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASG-GGRIVNIGAGAALKAG------  148 (239)
T ss_pred             HHHHhCCcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcC-CCEEEEECchHhccCC------
Confidence                  589999999854321   1111  12567899999999888875    345 7899999998766311      


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE  223 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  223 (331)
                                      ++...|+.+|.+.+.+++.++.+   .+++++++||+.++++......                
T Consensus       149 ----------------~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~i~pg~v~~~~~~~~~----------------  196 (239)
T PRK12828        149 ----------------PGMGAYAAAKAGVARLTEALAAELLDRGITVNAVLPSIIDTPPNRADM----------------  196 (239)
T ss_pred             ----------------CCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcchhhcC----------------
Confidence                            12346999999998888877654   4899999999999987422110                


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCCCC--Cc-eEEEec
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYPDA--KG-RYICSS  260 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~~--~~-~~~~~~  260 (331)
                        .......+++++|+++++.+++.+...  .| .+++.+
T Consensus       197 --~~~~~~~~~~~~dva~~~~~~l~~~~~~~~g~~~~~~g  234 (239)
T PRK12828        197 --PDADFSRWVTPEQIAAVIAFLLSDEAQAITGASIPVDG  234 (239)
T ss_pred             --CchhhhcCCCHHHHHHHHHHHhCcccccccceEEEecC
Confidence              000012579999999999999986532  24 455654

>PRK06179 short chain dehydrogenase; Provisional

Probab=99.87  E-value=6.2e-21  Score=163.34  Aligned_cols=218  Identities=17%  Similarity=0.117  Sum_probs=150.1

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |.+ +++|+||||+|+||++++++|+++|++|++++|+..     ....          ..+++++.+|+.|++++.+++
T Consensus         1 m~~-~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~-----~~~~----------~~~~~~~~~D~~d~~~~~~~~   64 (270)
T PRK06179          1 MSN-SKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPA-----RAAP----------IPGVELLELDVTDDASVQAAV   64 (270)
T ss_pred             CCC-CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChh-----hccc----------cCCCeeEEeecCCHHHHHHHH
Confidence            543 468999999999999999999999999999999862     1111          146788999999999888887


Q ss_pred             c-------CccEEEEecccCCCCC------CChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCC
Q 020104           81 A-------GCTGVLHVATPVDFED------KEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        81 ~-------~~d~Vih~a~~~~~~~------~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~  143 (331)
                      +       ++|+|||+||......      ++. +..+++|+.++.++++++    ++.+ .+++|++||...+..    
T Consensus        65 ~~~~~~~g~~d~li~~ag~~~~~~~~~~~~~~~-~~~~~~n~~g~~~~~~~~~~~~~~~~-~~~iv~isS~~~~~~----  138 (270)
T PRK06179         65 DEVIARAGRIDVLVNNAGVGLAGAAEESSIAQA-QALFDTNVFGILRMTRAVLPHMRAQG-SGRIINISSVLGFLP----  138 (270)
T ss_pred             HHHHHhCCCCCEEEECCCCCCCcCcccCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEECCccccCC----
Confidence            5       4799999998654211      122 378899999988888875    5556 689999999765421    


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCC--ccHHHHHHHH
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFA--GSVRSSLALI  218 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~--~~~~~~~~~~  218 (331)
                                        .+....|+.+|...+.+++.++.+   +++++++++|+.+.++.......  ..+.......
T Consensus       139 ------------------~~~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~  200 (270)
T PRK06179        139 ------------------APYMALYAASKHAVEGYSESLDHEVRQFGIRVSLVEPAYTKTNFDANAPEPDSPLAEYDRER  200 (270)
T ss_pred             ------------------CCCccHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeCCCcccccccccCCCCCcchhhHHHH
Confidence                              012347999999999998887654   48999999999998875332110  0010000000


Q ss_pred             hCCCcccccCCCccceeHHHHHHHHHHhhcCCCCCceEEEe
Q 020104          219 LGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDAKGRYICS  259 (331)
Q Consensus       219 ~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~  259 (331)
                      ......... ........+|+++.++.++..+.....|..+
T Consensus       201 ~~~~~~~~~-~~~~~~~~~~va~~~~~~~~~~~~~~~~~~~  240 (270)
T PRK06179        201 AVVSKAVAK-AVKKADAPEVVADTVVKAALGPWPKMRYTAG  240 (270)
T ss_pred             HHHHHHHHh-ccccCCCHHHHHHHHHHHHcCCCCCeeEecC
Confidence            000000000 0013467899999999999877655566553

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=99.87  E-value=5.7e-21  Score=162.57  Aligned_cols=225  Identities=13%  Similarity=0.087  Sum_probs=148.0

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      +++||||||+|+||++++++|+++|++|++++|+.     ...... ..+.... ...++.++.+|+.|.+++..+++  
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~-----~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~i~~~~~~~   75 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINS-----EKAANVAQEINAEY-GEGMAYGFGADATSEQSVLALSRGV   75 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHHHhc-CCceeEEEEccCCCHHHHHHHHHHH
Confidence            57899999999999999999999999999999986     222221 1111110 01358899999999988777654  


Q ss_pred             -----CccEEEEecccCCCC---CCC--hhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCCcc
Q 020104           82 -----GCTGVLHVATPVDFE---DKE--PEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~---~~~--~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                           ++|+|||+|+.....   ..+  ..+..+++|+.++..+++++.+    .+...++|++||..... +.      
T Consensus        76 ~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~-~~------  148 (259)
T PRK12384         76 DEIFGRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKV-GS------  148 (259)
T ss_pred             HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCccccc-CC------
Confidence                 579999999854311   111  1236778999998877776654    23125899999965321 10      


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC--
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR--  222 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--  222 (331)
                                     ....+|+.+|.+.+.+++.++.+   ++++++++|||.++++.....   .+...... .+..  
T Consensus       149 ---------------~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~pg~~~~~~~~~~---~~~~~~~~-~~~~~~  209 (259)
T PRK12384        149 ---------------KHNSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQS---LLPQYAKK-LGIKPD  209 (259)
T ss_pred             ---------------CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCcccchhhhh---hhHHHHHh-cCCChH
Confidence                           11347999999999888887753   589999999999887643211   11111100 0000  


Q ss_pred             ---cccccC-CCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          223 ---EEYGFL-LNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       223 ---~~~~~~-~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                         ..+... ....+++++|++.++++++.+..   .+..|+++++
T Consensus       210 ~~~~~~~~~~~~~~~~~~~dv~~~~~~l~~~~~~~~~G~~~~v~~g  255 (259)
T PRK12384        210 EVEQYYIDKVPLKRGCDYQDVLNMLLFYASPKASYCTGQSINVTGG  255 (259)
T ss_pred             HHHHHHHHhCcccCCCCHHHHHHHHHHHcCcccccccCceEEEcCC
Confidence               001111 11478999999999999987543   2456777654

>PRK06128 oxidoreductase; Provisional

Probab=99.87  E-value=1.3e-20  Score=163.61  Aligned_cols=220  Identities=10%  Similarity=0.104  Sum_probs=152.5

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      +|++|||||+|+||+++++.|++.|++|+++.|+...   ...+. .+.+..   ...++.++.+|+.|.+++.++++  
T Consensus        55 ~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~---~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~v~~~~~~~  128 (300)
T PRK06128         55 GRKALITGADSGIGRATAIAFAREGADIALNYLPEEE---QDAAEVVQLIQA---EGRKAVALPGDLKDEAFCRQLVERA  128 (300)
T ss_pred             CCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcch---HHHHHHHHHHHH---cCCeEEEEecCCCCHHHHHHHHHHH
Confidence            4789999999999999999999999999988776410   01111 111111   12457789999999988877664  


Q ss_pred             -----CccEEEEecccCCC-------CCCChhhHHHHHHHHHHHHHHHHHHhc-CCccEEEEecccceeecCCCCCCccc
Q 020104           82 -----GCTGVLHVATPVDF-------EDKEPEEVITQRAINGTLGILKSCLKS-GTVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                           ++|+|||+|+....       ..+++ +..+++|+.++..+++++... ..-.++|++||...+...        
T Consensus       129 ~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~--------  199 (300)
T PRK06128        129 VKELGGLDILVNIAGKQTAVKDIADITTEQF-DATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQPS--------  199 (300)
T ss_pred             HHHhCCCCEEEECCcccCCCCChhhCCHHHH-HHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccCCC--------
Confidence                 68999999985421       11223 378999999999999999754 112599999998776311        


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCccc
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEY  225 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  225 (331)
                                    +....|+.+|.+.+.+++.++.+   .++++++++||.+.++.......  ........ +....+
T Consensus       200 --------------~~~~~Y~asK~a~~~~~~~la~el~~~gI~v~~v~PG~i~t~~~~~~~~--~~~~~~~~-~~~~p~  262 (300)
T PRK06128        200 --------------PTLLDYASTKAAIVAFTKALAKQVAEKGIRVNAVAPGPVWTPLQPSGGQ--PPEKIPDF-GSETPM  262 (300)
T ss_pred             --------------CCchhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEECcCcCCCcccCCC--CHHHHHHH-hcCCCC
Confidence                          11336999999999999988876   48999999999999985322110  01111111 111222


Q ss_pred             ccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          226 GFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       226 ~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                           ..+.+.+|++.++++++....   .+..++++++
T Consensus       263 -----~r~~~p~dva~~~~~l~s~~~~~~~G~~~~v~gg  296 (300)
T PRK06128        263 -----KRPGQPVEMAPLYVLLASQESSYVTGEVFGVTGG  296 (300)
T ss_pred             -----CCCcCHHHHHHHHHHHhCccccCccCcEEeeCCC
Confidence                 267899999999999987543   2446777553

>PRK06194 hypothetical protein; Provisional

Probab=99.87  E-value=5e-21  Score=165.42  Aligned_cols=171  Identities=13%  Similarity=0.050  Sum_probs=121.8

Q ss_pred             CCCC-CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH
Q 020104            1 MEEG-KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         1 M~~~-~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      |..+ +++||||||+|+||++++++|+++|++|++++|+.     +......  .++.....++.++.+|+.|.+++.++
T Consensus         1 m~~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~-----~~~~~~~--~~~~~~~~~~~~~~~D~~d~~~~~~~   73 (287)
T PRK06194          1 MKDFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQ-----DALDRAV--AELRAQGAEVLGVRTDVSDAAQVEAL   73 (287)
T ss_pred             CcCCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCCh-----HHHHHHH--HHHHhcCCeEEEEECCCCCHHHHHHH
Confidence            4432 47899999999999999999999999999999976     2221111  11111124678899999999988887


Q ss_pred             hc-------CccEEEEecccCCCC---C---CChhhHHHHHHHHHHHHHHHH----HHhcCC-----ccEEEEeccccee
Q 020104           80 IA-------GCTGVLHVATPVDFE---D---KEPEEVITQRAINGTLGILKS----CLKSGT-----VKRVVYTSSNAAV  137 (331)
Q Consensus        80 ~~-------~~d~Vih~a~~~~~~---~---~~~~~~~~~~n~~~~~~l~~~----~~~~~~-----~~~~v~~SS~~~~  137 (331)
                      ++       ++|+|||+||.....   .   .++ +..+++|+.++.+++++    +.+.+.     ..++|++||...+
T Consensus        74 ~~~~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~-~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~  152 (287)
T PRK06194         74 ADAALERFGAVHLLFNNAGVGAGGLVWENSLADW-EWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGL  152 (287)
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHH-HHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhc
Confidence            75       479999999975421   1   122 25688999999987776    344431     1589999998766


Q ss_pred             ecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc-----CCcEEEeccCceeCC
Q 020104          138 FYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH-----GLDLVTLIPSMVVGP  201 (331)
Q Consensus       138 ~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~-----~~~~~ilRp~~v~G~  201 (331)
                      ...                      ++..+|+.+|.+.+.+++.++.++     +++++.+.|+.+..+
T Consensus       153 ~~~----------------------~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t~  199 (287)
T PRK06194        153 LAP----------------------PAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPTG  199 (287)
T ss_pred             cCC----------------------CCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccCc
Confidence            311                      123479999999999999887765     366777777666443

>PRK12827 short chain dehydrogenase; Provisional

Probab=99.87  E-value=1.3e-20  Score=159.32  Aligned_cols=217  Identities=18%  Similarity=0.156  Sum_probs=150.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccccccc-CCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLK-NLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      ++|+|+||||+|+||+++++.|+++|++|++++|...    ...+....+. +......++.++.+|+.|.+++.++++ 
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~   80 (249)
T PRK12827          5 DSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPM----RGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDA   80 (249)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCccc----ccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence            3578999999999999999999999999999887542    1111111111 111122468899999999988887763 


Q ss_pred             ------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHH-----hcCCccEEEEecccceeecCCCCC
Q 020104           82 ------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCL-----KSGTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~-----~~~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                            ++|+|||+|+.....      ..++ ...+++|+.++.++++++.     +.+ .+++|++||...+...    
T Consensus        81 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~~iv~~sS~~~~~~~----  154 (249)
T PRK12827         81 GVEEFGRLDILVNNAGIATDAAFAELSIEEW-DDVIDVNLDGFFNVTQAALPPMIRARR-GGRIVNIASVAGVRGN----  154 (249)
T ss_pred             HHHHhCCCCEEEECCCCCCCCCcccCCHHHH-HHHHHHhhhHHHHHHHHHHHHHHhcCC-CeEEEEECCchhcCCC----
Confidence                  589999999865411      1122 2678899999999999988     344 6799999997765311    


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                                        ++...|+.+|.+.+.+++.++.+.   +++++++||+.+.++........   .  ......
T Consensus       155 ------------------~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~~~---~--~~~~~~  211 (249)
T PRK12827        155 ------------------RGQVNYAASKAGLIGLTKTLANELAPRGITVNAVAPGAINTPMADNAAPT---E--HLLNPV  211 (249)
T ss_pred             ------------------CCCchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEEECCcCCCcccccchH---H--HHHhhC
Confidence                              123469999999999988887653   89999999999999854332110   0  001111


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCCC---CceEEEec
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPDA---KGRYICSS  260 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~---~~~~~~~~  260 (331)
                        ..     ..+.+.+|++++++.++.....   +..+++.+
T Consensus       212 --~~-----~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~~  246 (249)
T PRK12827        212 --PV-----QRLGEPDEVAALVAFLVSDAASYVTGQVIPVDG  246 (249)
T ss_pred             --CC-----cCCcCHHHHHHHHHHHcCcccCCccCcEEEeCC
Confidence              11     1456889999999998865322   33455544

>PRK05993 short chain dehydrogenase; Provisional

Probab=99.87  E-value=1.8e-20  Score=160.93  Aligned_cols=220  Identities=20%  Similarity=0.221  Sum_probs=146.6

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |. ++++|+||||+|+||+++++.|+++|++|++++|++     +...   .+..     .+++++.+|+.|.+++.+++
T Consensus         1 m~-~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~-----~~~~---~l~~-----~~~~~~~~Dl~d~~~~~~~~   66 (277)
T PRK05993          1 MD-MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKE-----EDVA---ALEA-----EGLEAFQLDYAEPESIAALV   66 (277)
T ss_pred             CC-CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH-----HHHH---HHHH-----CCceEEEccCCCHHHHHHHH
Confidence            43 457899999999999999999999999999999987     2222   2221     25788999999998777665


Q ss_pred             c--------CccEEEEecccCCCCC---CC--hhhHHHHHHHHH----HHHHHHHHHhcCCccEEEEecccceeecCCCC
Q 020104           81 A--------GCTGVLHVATPVDFED---KE--PEEVITQRAING----TLGILKSCLKSGTVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        81 ~--------~~d~Vih~a~~~~~~~---~~--~~~~~~~~n~~~----~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~  143 (331)
                      +        ++|+|||+|+......   .+  ..+..+++|+.+    ++.+++.+++.+ ..++|++||...+.  +  
T Consensus        67 ~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~-~g~iv~isS~~~~~--~--  141 (277)
T PRK05993         67 AQVLELSGGRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQG-QGRIVQCSSILGLV--P--  141 (277)
T ss_pred             HHHHHHcCCCccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcC-CCEEEEECChhhcC--C--
Confidence            3        4799999998644221   11  123678899998    666777777777 68999999965431  1  


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCcc---------H
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGS---------V  211 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~---------~  211 (331)
                                        .++...|+.+|.+.+.+++.++.+   +++++++++||.+..+.........         .
T Consensus       142 ------------------~~~~~~Y~asK~a~~~~~~~l~~el~~~gi~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~~~~  203 (277)
T PRK05993        142 ------------------MKYRGAYNASKFAIEGLSLTLRMELQGSGIHVSLIEPGPIETRFRANALAAFKRWIDIENSV  203 (277)
T ss_pred             ------------------CCccchHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCCccCchhhHHHHHHhhhhccccch
Confidence                              122457999999999999887643   4899999999998766322100000         0


Q ss_pred             --HHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCCCCceEEEe
Q 020104          212 --RSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDAKGRYICS  259 (331)
Q Consensus       212 --~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~  259 (331)
                        ............. . ......+..+++++.++.++.++.....|.++
T Consensus       204 ~~~~~~~~~~~~~~~-~-~~~~~~~~~~~va~~i~~a~~~~~~~~~~~~~  251 (277)
T PRK05993        204 HRAAYQQQMARLEGG-G-SKSRFKLGPEAVYAVLLHALTAPRPRPHYRVT  251 (277)
T ss_pred             hHHHHHHHHHHHHhh-h-hccccCCCHHHHHHHHHHHHcCCCCCCeeeeC
Confidence              0000000000000 0 00012367899999999999877544455543

>PRK05876 short chain dehydrogenase; Provisional

Probab=99.87  E-value=6.8e-21  Score=163.18  Aligned_cols=239  Identities=17%  Similarity=0.152  Sum_probs=153.8

Q ss_pred             CCC-CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH
Q 020104            1 MEE-GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         1 M~~-~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      |.. ++|++|||||+|+||+++++.|+++|++|++++|+.+     ..+...  .++.....++.++.+|+.|.+++.++
T Consensus         1 ~~~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~-----~l~~~~--~~l~~~~~~~~~~~~Dv~d~~~v~~~   73 (275)
T PRK05876          1 MDGFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKP-----GLRQAV--NHLRAEGFDVHGVMCDVRHREEVTHL   73 (275)
T ss_pred             CCCcCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHH--HHHHhcCCeEEEEeCCCCCHHHHHHH
Confidence            443 3567999999999999999999999999999998862     222111  11111123578899999999988877


Q ss_pred             hc-------CccEEEEecccCCCC---CC--ChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCC
Q 020104           80 IA-------GCTGVLHVATPVDFE---DK--EPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        80 ~~-------~~d~Vih~a~~~~~~---~~--~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~  143 (331)
                      ++       ++|+|||+||.....   ..  +..+..+++|+.++.++++++.    +.+...++|++||...+..    
T Consensus        74 ~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~~----  149 (275)
T PRK05876         74 ADEAFRLLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLVP----  149 (275)
T ss_pred             HHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhccC----
Confidence            64       479999999864311   11  1123678999999999988875    3332368999999766521    


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhC
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILG  220 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~  220 (331)
                                        .++...|+.+|.+.+.+.+.++.+   .++++++++|+.+.++......  ...........
T Consensus       150 ------------------~~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~--~~~~~~~~~~~  209 (275)
T PRK05876        150 ------------------NAGLGAYGVAKYGVVGLAETLAREVTADGIGVSVLCPMVVETNLVANSE--RIRGAACAQSS  209 (275)
T ss_pred             ------------------CCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCccccccccchh--hhcCccccccc
Confidence                              123457999999866666655543   4899999999999877432110  00000000000


Q ss_pred             CCcccccC-CCccceeHHHHHHHHHHhhcCCCCCceEEEeccccCHHHHHHHHHh
Q 020104          221 NREEYGFL-LNTSMVHVDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSA  274 (331)
Q Consensus       221 ~~~~~~~~-~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~  274 (331)
                      .....+.. ..+++++++|+|++++.++.++   ..+.+. ......++.+.+.+
T Consensus       210 ~~~~~~~~~~~~~~~~~~dva~~~~~ai~~~---~~~~~~-~~~~~~~~~~~~~~  260 (275)
T PRK05876        210 TTGSPGPLPLQDDNLGVDDIAQLTADAILAN---RLYVLP-HAASRASIRRRFER  260 (275)
T ss_pred             cccccccccccccCCCHHHHHHHHHHHHHcC---CeEEec-ChhhHHHHHHHHHH
Confidence            00111111 1247899999999999999765   244444 33455555555544

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=99.87  E-value=1.1e-20  Score=159.56  Aligned_cols=220  Identities=16%  Similarity=0.173  Sum_probs=148.2

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |...+++||||||||+||+++++.|++.|++|+++.|+..    ........  ++.....++.++.+|+.+.+++.+++
T Consensus         1 ~~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~Dl~~~~~~~~~~   74 (248)
T PRK05557          1 MSLEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSE----AGAEALVA--EIGALGGKALAVQGDVSDAESVERAV   74 (248)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCch----hHHHHHHH--HHHhcCCceEEEEcCCCCHHHHHHHH
Confidence            4555679999999999999999999999999988888762    11111111  11111246788999999999887766


Q ss_pred             c-------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCCCC
Q 020104           81 A-------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        81 ~-------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~  143 (331)
                      +       ++|+|||+|+.....      ...+ ...++.|+.++.++++++...    + .+++|++||..... +.  
T Consensus        75 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~v~iss~~~~~-~~--  149 (248)
T PRK05557         75 DEAKAEFGGVDILVNNAGITRDNLLMRMKEEDW-DRVIDTNLTGVFNLTKAVARPMMKQR-SGRIINISSVVGLM-GN--  149 (248)
T ss_pred             HHHHHHcCCCCEEEECCCcCCCCCcccCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHhcC-CeEEEEEcccccCc-CC--
Confidence            4       589999999864421      1122 266789999999998888753    3 56899999964432 11  


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhC
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILG  220 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~  220 (331)
                                         +....|+.+|.+.+.+++.++.+   .++++++++|+.+.++......    .........
T Consensus       150 -------------------~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~v~pg~~~~~~~~~~~----~~~~~~~~~  206 (248)
T PRK05557        150 -------------------PGQANYAASKAGVIGFTKSLARELASRGITVNAVAPGFIETDMTDALP----EDVKEAILA  206 (248)
T ss_pred             -------------------CCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccCCccccccC----hHHHHHHHh
Confidence                               11346999999999888877654   3799999999988655422211    111111111


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCC--CC-CceEEEec
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYP--DA-KGRYICSS  260 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~--~~-~~~~~~~~  260 (331)
                      . ...     ..+.+++|+++++..++...  .. +..+++.+
T Consensus       207 ~-~~~-----~~~~~~~~va~~~~~l~~~~~~~~~g~~~~i~~  243 (248)
T PRK05557        207 Q-IPL-----GRLGQPEEIASAVAFLASDEAAYITGQTLHVNG  243 (248)
T ss_pred             c-CCC-----CCCcCHHHHHHHHHHHcCcccCCccccEEEecC
Confidence            1 111     25789999999999888652  22 34566654

>PRK07890 short chain dehydrogenase; Provisional

Probab=99.87  E-value=5.6e-21  Score=162.52  Aligned_cols=213  Identities=17%  Similarity=0.160  Sum_probs=147.6

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |-.++|+||||||+|+||++++++|+++|++|++++|+.     ...+.+..  ++.....++.++.+|+.|.+++..++
T Consensus         1 ~~l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~-----~~~~~~~~--~~~~~~~~~~~~~~D~~~~~~~~~~~   73 (258)
T PRK07890          1 MLLKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTA-----ERLDEVAA--EIDDLGRRALAVPTDITDEDQCANLV   73 (258)
T ss_pred             CccCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCH-----HHHHHHHH--HHHHhCCceEEEecCCCCHHHHHHHH
Confidence            444568999999999999999999999999999999987     22222111  11111246788999999998887766


Q ss_pred             c-------CccEEEEecccCCC-------CCCChhhHHHHHHHHHHHHHHHHHHhcC--CccEEEEecccceeecCCCCC
Q 020104           81 A-------GCTGVLHVATPVDF-------EDKEPEEVITQRAINGTLGILKSCLKSG--TVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        81 ~-------~~d~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~  144 (331)
                      +       ++|+|||+|+....       ..+++ ...+++|+.++..+++++...-  ...++|++||...+..     
T Consensus        74 ~~~~~~~g~~d~vi~~ag~~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~-----  147 (258)
T PRK07890         74 ALALERFGRVDALVNNAFRVPSMKPLADADFAHW-RAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLRHS-----  147 (258)
T ss_pred             HHHHHHcCCccEEEECCccCCCCCCcccCCHHHH-HHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhccC-----
Confidence            3       58999999986431       11223 3788999999999999987531  1258999999765421     


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCc-------cHHHH
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAG-------SVRSS  214 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~-------~~~~~  214 (331)
                                       .++...|+.+|...+.+++.++.+.   ++++++++|+.++++........       .....
T Consensus       148 -----------------~~~~~~Y~~sK~a~~~l~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~  210 (258)
T PRK07890        148 -----------------QPKYGAYKMAKGALLAASQSLATELGPQGIRVNSVAPGYIWGDPLKGYFRHQAGKYGVTVEQI  210 (258)
T ss_pred             -----------------CCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCccCcHHHHHHhhhcccccCCCHHHH
Confidence                             1123479999999999999888653   79999999999999853221100       00011


Q ss_pred             HHHHhCCCcccccCCCccceeHHHHHHHHHHhhcC
Q 020104          215 LALILGNREEYGFLLNTSMVHVDDVARAHIFLLEY  249 (331)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~  249 (331)
                      ...... ....     ..+.+++|+++++++++..
T Consensus       211 ~~~~~~-~~~~-----~~~~~~~dva~a~~~l~~~  239 (258)
T PRK07890        211 YAETAA-NSDL-----KRLPTDDEVASAVLFLASD  239 (258)
T ss_pred             HHHHhh-cCCc-----cccCCHHHHHHHHHHHcCH
Confidence            111111 0111     2578999999999998875

>PRK07060 short chain dehydrogenase; Provisional

Probab=99.87  E-value=1.2e-20  Score=159.25  Aligned_cols=213  Identities=19%  Similarity=0.213  Sum_probs=149.6

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      +++++||||+|+||+++++.|+++|++|++++|+.     +....+.   +.    .+..++.+|+.+.+++.++++   
T Consensus         9 ~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~-----~~~~~~~---~~----~~~~~~~~D~~~~~~v~~~~~~~~   76 (245)
T PRK07060          9 GKSVLVTGASSGIGRACAVALAQRGARVVAAARNA-----AALDRLA---GE----TGCEPLRLDVGDDAAIRAALAAAG   76 (245)
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHH---HH----hCCeEEEecCCCHHHHHHHHHHhC
Confidence            47899999999999999999999999999999987     2222211   11    135678899999888888775   


Q ss_pred             CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCCCCCCcccCCC
Q 020104           82 GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYNDKDVDMMDETF  151 (331)
Q Consensus        82 ~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~E~~  151 (331)
                      ++|+|||+|+.....      ..++ +..+++|+.++.++++++.+.    +..+++|++||...+...           
T Consensus        77 ~~d~vi~~ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~-----------  144 (245)
T PRK07060         77 AFDGLVNCAGIASLESALDMTAEGF-DRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALVGL-----------  144 (245)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcCCC-----------
Confidence            489999999865421      1122 356779999999999988753    113689999997765311           


Q ss_pred             CCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccC
Q 020104          152 WSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFL  228 (331)
Q Consensus       152 ~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (331)
                                 ++...|+.+|.+.+.+++.++.+.   +++++.+||+.++++........ ... ....... ..    
T Consensus       145 -----------~~~~~y~~sK~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~-~~~-~~~~~~~-~~----  206 (245)
T PRK07060        145 -----------PDHLAYCASKAALDAITRVLCVELGPHGIRVNSVNPTVTLTPMAAEAWSD-PQK-SGPMLAA-IP----  206 (245)
T ss_pred             -----------CCCcHhHHHHHHHHHHHHHHHHHHhhhCeEEEEEeeCCCCCchhhhhccC-HHH-HHHHHhc-CC----
Confidence                       113479999999999999887653   79999999999998853321111 000 1111111 11    


Q ss_pred             CCccceeHHHHHHHHHHhhcCCCC---CceEEEec
Q 020104          229 LNTSMVHVDDVARAHIFLLEYPDA---KGRYICSS  260 (331)
Q Consensus       229 ~~~~~i~v~D~a~~~~~~~~~~~~---~~~~~~~~  260 (331)
                       ...+++++|++++++.++..+..   +..+++++
T Consensus       207 -~~~~~~~~d~a~~~~~l~~~~~~~~~G~~~~~~~  240 (245)
T PRK07060        207 -LGRFAEVDDVAAPILFLLSDAASMVSGVSLPVDG  240 (245)
T ss_pred             -CCCCCCHHHHHHHHHHHcCcccCCccCcEEeECC
Confidence             13689999999999999976532   33455654

>PRK08628 short chain dehydrogenase; Provisional

Probab=99.87  E-value=8.1e-21  Score=161.56  Aligned_cols=230  Identities=21%  Similarity=0.228  Sum_probs=154.5

Q ss_pred             CCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            2 EEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         2 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      +..++++|||||+|+||++++++|+++|++|++++|+.     ...+..+.+.+   ...++.++.+|+.+.+++..+++
T Consensus         4 ~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~-----~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~   75 (258)
T PRK08628          4 NLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSA-----PDDEFAEELRA---LQPRAEFVQVDLTDDAQCRDAVE   75 (258)
T ss_pred             CcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCCh-----hhHHHHHHHHh---cCCceEEEEccCCCHHHHHHHHH
Confidence            34457899999999999999999999999999999987     22211222211   12468899999999998887764


Q ss_pred             -------CccEEEEecccCCCCC-C---ChhhHHHHHHHHHHHHHHHHHHh---cCCccEEEEecccceeecCCCCCCcc
Q 020104           82 -------GCTGVLHVATPVDFED-K---EPEEVITQRAINGTLGILKSCLK---SGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 -------~~d~Vih~a~~~~~~~-~---~~~~~~~~~n~~~~~~l~~~~~~---~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                             ++|+|||+|+...... .   +..+..+++|+.++.++.+++.+   .+ ..++|++||...+...       
T Consensus        76 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~iv~~ss~~~~~~~-------  147 (258)
T PRK08628         76 QTVAKFGRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKAS-RGAIVNISSKTALTGQ-------  147 (258)
T ss_pred             HHHHhcCCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhcc-CcEEEEECCHHhccCC-------
Confidence                   5899999998543110 1   12236788999999998888754   23 3689999997655211       


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCc--cHHHHHHHHhCCC
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAG--SVRSSLALILGNR  222 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~--~~~~~~~~~~~~~  222 (331)
                                     ++...|+.+|...+.+++.++.+   .+++++.++||.++++........  ............ 
T Consensus       148 ---------------~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~-  211 (258)
T PRK08628        148 ---------------GGTSGYAAAKGAQLALTREWAVALAKDGVRVNAVIPAEVMTPLYENWIATFDDPEAKLAAITAK-  211 (258)
T ss_pred             ---------------CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCHHHHHHhhhccCHHHHHHHHHhc-
Confidence                           12347999999999999988764   479999999999998742210000  000011111111 


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEeccccCHHH
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSHTLTIQE  267 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~~~s~~e  267 (331)
                      ..++    ..++..+|+++++++++....  ..| .+.+.+....+++
T Consensus       212 ~~~~----~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~gg~~~~~~  255 (258)
T PRK08628        212 IPLG----HRMTTAEEIADTAVFLLSERSSHTTGQWLFVDGGYVHLDR  255 (258)
T ss_pred             CCcc----ccCCCHHHHHHHHHHHhChhhccccCceEEecCCcccccc
Confidence            1111    157889999999999997642  233 4556554444443

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=99.87  E-value=9.7e-21  Score=160.29  Aligned_cols=220  Identities=20%  Similarity=0.200  Sum_probs=151.2

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      +++||||||+|+||++++++|++.|++|++++|+.     .....+ ..+.+   ...++.++.+|+.|.+++.+++.  
T Consensus         3 ~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~   74 (250)
T TIGR03206         3 DKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNR-----EAAEKVAADIRA---KGGNAQAFACDITDRDSVDTAVAAA   74 (250)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCH-----HHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHHH
Confidence            57899999999999999999999999999999876     222221 11111   12468899999999988887764  


Q ss_pred             -----CccEEEEecccCCCC---CCCh--hhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCcc
Q 020104           82 -----GCTGVLHVATPVDFE---DKEP--EEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~---~~~~--~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                           ++|+|||+|+.....   ..+.  .+..+++|+.++.++++++.    +.+ .+++|++||...+...       
T Consensus        75 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~ii~iss~~~~~~~-------  146 (250)
T TIGR03206        75 EQALGPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERG-AGRIVNIASDAARVGS-------  146 (250)
T ss_pred             HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CeEEEEECchhhccCC-------
Confidence                 589999999854311   1111  13578899999999888775    445 5799999998776311       


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCC--ccHHHHHHHHhCCC
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFA--GSVRSSLALILGNR  222 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~--~~~~~~~~~~~~~~  222 (331)
                                     +....|+.+|.+.+.+++.++.+.   +++++++||+.++++.......  ............. 
T Consensus       147 ---------------~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~-  210 (250)
T TIGR03206       147 ---------------SGEAVYAACKGGLVAFSKTMAREHARHGITVNVVCPGPTDTALLDDICGGAENPEKLREAFTRA-  210 (250)
T ss_pred             ---------------CCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEecCcccchhHHhhhhccCChHHHHHHHHhc-
Confidence                           113369999999999988887764   8999999999999884221100  0001111111111 


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ...     ..+...+|+|+++.+++..+.   .+..++++++
T Consensus       211 ~~~-----~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g  247 (250)
T TIGR03206       211 IPL-----GRLGQPDDLPGAILFFSSDDASFITGQVLSVSGG  247 (250)
T ss_pred             CCc-----cCCcCHHHHHHHHHHHcCcccCCCcCcEEEeCCC
Confidence            111     146678999999999987653   2445666543

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.86  E-value=2.3e-20  Score=158.02  Aligned_cols=218  Identities=17%  Similarity=0.149  Sum_probs=148.2

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEE-ecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTT-VRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      +++++||||+|+||++++++|+++|++|+++ .|+.     ...+. ...++.   ...++.++.+|+.|++++.++++ 
T Consensus         4 ~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~   75 (250)
T PRK08063          4 GKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSR-----KAAEETAEEIEA---LGRKALAVKANVGDVEKIKEMFAQ   75 (250)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCH-----HHHHHHHHHHHh---cCCeEEEEEcCCCCHHHHHHHHHH
Confidence            4689999999999999999999999998764 5655     11111 111111   12467889999999998887765 


Q ss_pred             ------CccEEEEecccCCCCC---CC--hhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCCc
Q 020104           82 ------GCTGVLHVATPVDFED---KE--PEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~~---~~--~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                            ++|+|||+|+......   .+  .....+++|+.++.++++++.+    .+ .++||++||...+..       
T Consensus        76 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~~sS~~~~~~-------  147 (250)
T PRK08063         76 IDEEFGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVG-GGKIISLSSLGSIRY-------  147 (250)
T ss_pred             HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CeEEEEEcchhhccC-------
Confidence                  4899999998643211   11  1124678999999998888875    33 569999999665421       


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE  223 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  223 (331)
                                     .++...|+.+|.+.+.+++.++.+   .+++++.++|+.+..+.... ..... ......... .
T Consensus       148 ---------------~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~t~~~~~-~~~~~-~~~~~~~~~-~  209 (250)
T PRK08063        148 ---------------LENYTTVGVSKAALEALTRYLAVELAPKGIAVNAVSGGAVDTDALKH-FPNRE-ELLEDARAK-T  209 (250)
T ss_pred             ---------------CCCccHHHHHHHHHHHHHHHHHHHHhHhCeEEEeEecCcccCchhhh-ccCch-HHHHHHhcC-C
Confidence                           122447999999999999988765   47999999999998765321 11111 111111111 1


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCCCC---CceEEEecc
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYPDA---KGRYICSSH  261 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~~---~~~~~~~~~  261 (331)
                      ..     ..+++.+|+++++++++.++..   +..++++++
T Consensus       210 ~~-----~~~~~~~dva~~~~~~~~~~~~~~~g~~~~~~gg  245 (250)
T PRK08063        210 PA-----GRMVEPEDVANAVLFLCSPEADMIRGQTIIVDGG  245 (250)
T ss_pred             CC-----CCCcCHHHHHHHHHHHcCchhcCccCCEEEECCC
Confidence            11     2579999999999999976432   345666543

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=99.86  E-value=1.4e-20  Score=159.46  Aligned_cols=201  Identities=15%  Similarity=0.105  Sum_probs=144.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+..          .      ....++.++++|+.|.+++.++++  
T Consensus         7 ~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~~----------~------~~~~~~~~~~~D~~~~~~~~~~~~~~   70 (252)
T PRK08220          7 SGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAFL----------T------QEDYPFATFVLDVSDAAAVAQVCQRL   70 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecchh----------h------hcCCceEEEEecCCCHHHHHHHHHHH
Confidence            3478999999999999999999999999999988750          0      011467889999999998888765  


Q ss_pred             -----CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCCc
Q 020104           82 -----GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                           ++|+|||+|+.....      ..++. ..+++|+.++..+++++..    .+ ..++|++||......       
T Consensus        71 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~-~~~~~n~~~~~~l~~~~~~~~~~~~-~g~iv~~ss~~~~~~-------  141 (252)
T PRK08220         71 LAETGPLDVLVNAAGILRMGATDSLSDEDWQ-QTFAVNAGGAFNLFRAVMPQFRRQR-SGAIVTVGSNAAHVP-------  141 (252)
T ss_pred             HHHcCCCCEEEECCCcCCCCCcccCCHHHHH-HHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEECCchhccC-------
Confidence                 479999999865421      12233 7889999999999988753    34 468999999654320       


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCcc--HHHH----HHH
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGS--VRSS----LAL  217 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~--~~~~----~~~  217 (331)
                                     ..+.+.|+.+|...+.+++.++.+   +++++++++|+.++++.........  ....    ...
T Consensus       142 ---------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~  206 (252)
T PRK08220        142 ---------------RIGMAAYGASKAALTSLAKCVGLELAPYGVRCNVVSPGSTDTDMQRTLWVDEDGEQQVIAGFPEQ  206 (252)
T ss_pred             ---------------CCCCchhHHHHHHHHHHHHHHHHHhhHhCeEEEEEecCcCcchhhhhhccchhhhhhhhhhHHHH
Confidence                           112457999999999999888876   5899999999999998532110000  0000    000


Q ss_pred             HhCCCcccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          218 ILGNREEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       218 ~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      .. .....     ..+++++|+++++++++...
T Consensus       207 ~~-~~~~~-----~~~~~~~dva~~~~~l~~~~  233 (252)
T PRK08220        207 FK-LGIPL-----GKIARPQEIANAVLFLASDL  233 (252)
T ss_pred             Hh-hcCCC-----cccCCHHHHHHHHHHHhcch
Confidence            11 01111     37899999999999998753

>PRK06701 short chain dehydrogenase; Provisional

Probab=99.86  E-value=2.8e-20  Score=160.57  Aligned_cols=219  Identities=13%  Similarity=0.113  Sum_probs=152.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      ++|+||||||+|+||.+++++|+++|++|++++|+..    .....+...  +.....++.++.+|+.|.+++.++++  
T Consensus        45 ~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~----~~~~~~~~~--~~~~~~~~~~~~~Dl~~~~~~~~~~~~i  118 (290)
T PRK06701         45 KGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEH----EDANETKQR--VEKEGVKCLLIPGDVSDEAFCKDAVEET  118 (290)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcc----hHHHHHHHH--HHhcCCeEEEEEccCCCHHHHHHHHHHH
Confidence            3578999999999999999999999999999998752    111111111  11112467889999999988877764  


Q ss_pred             -----CccEEEEecccCCCC--C-----CChhhHHHHHHHHHHHHHHHHHHhc-CCccEEEEecccceeecCCCCCCccc
Q 020104           82 -----GCTGVLHVATPVDFE--D-----KEPEEVITQRAINGTLGILKSCLKS-GTVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~--~-----~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                           ++|+|||+|+.....  .     +++ ...+++|+.++.++++++... ....++|++||...+...        
T Consensus       119 ~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~-~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~~~--------  189 (290)
T PRK06701        119 VRELGRLDILVNNAAFQYPQQSLEDITAEQL-DKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYEGN--------  189 (290)
T ss_pred             HHHcCCCCEEEECCcccCCCCCcccCCHHHH-HHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccCCC--------
Confidence                 589999999864311  1     122 368899999999999998763 113589999998776311        


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCccc
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEY  225 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  225 (331)
                                    +....|+.+|.+.+.+++.++.+.   +++++.++||.++.+.......   ....... ......
T Consensus       190 --------------~~~~~Y~~sK~a~~~l~~~la~~~~~~gIrv~~i~pG~v~T~~~~~~~~---~~~~~~~-~~~~~~  251 (290)
T PRK06701        190 --------------ETLIDYSATKGAIHAFTRSLAQSLVQKGIRVNAVAPGPIWTPLIPSDFD---EEKVSQF-GSNTPM  251 (290)
T ss_pred             --------------CCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCCCCcccccccC---HHHHHHH-HhcCCc
Confidence                          012369999999999999988765   8999999999998875332111   0111111 111111


Q ss_pred             ccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEec
Q 020104          226 GFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSS  260 (331)
Q Consensus       226 ~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~  260 (331)
                           ..+.+++|+++++++++....   .+..+++++
T Consensus       252 -----~~~~~~~dva~~~~~ll~~~~~~~~G~~i~idg  284 (290)
T PRK06701        252 -----QRPGQPEELAPAYVFLASPDSSYITGQMLHVNG  284 (290)
T ss_pred             -----CCCcCHHHHHHHHHHHcCcccCCccCcEEEeCC
Confidence                 368899999999999998653   234556654

>PRK06123 short chain dehydrogenase; Provisional

Probab=99.86  E-value=1.5e-20  Score=158.91  Aligned_cols=218  Identities=15%  Similarity=0.130  Sum_probs=146.3

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      ++++|||||+|+||++++++|+++|+.|++..++.+    +..... ..+..   ...++.++.+|+.|.+++.+++.  
T Consensus         2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~----~~~~~~~~~l~~---~~~~~~~~~~Dl~~~~~~~~~~~~~   74 (248)
T PRK06123          2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRNR----DAAEAVVQAIRR---QGGEALAVAADVADEADVLRLFEAV   74 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCH----HHHHHHHHHHHh---CCCcEEEEEeccCCHHHHHHHHHHH
Confidence            468999999999999999999999999887765431    111111 11111   12357789999999988887765  


Q ss_pred             -----CccEEEEecccCCCC-------CCChhhHHHHHHHHHHHHHHHHHHhcC------CccEEEEecccceeecCCCC
Q 020104           82 -----GCTGVLHVATPVDFE-------DKEPEEVITQRAINGTLGILKSCLKSG------TVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~-------~~~~~~~~~~~n~~~~~~l~~~~~~~~------~~~~~v~~SS~~~~~~~~~~  143 (331)
                           ++|+|||+|+.....       .+++ ...+++|+.++.++++++.+.-      .-.++|++||...+... . 
T Consensus        75 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~-~-  151 (248)
T PRK06123         75 DRELGRLDALVNNAGILEAQMRLEQMDAARL-TRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGS-P-  151 (248)
T ss_pred             HHHhCCCCEEEECCCCCCCCCChhhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCC-C-
Confidence                 589999999865311       1122 3678999999999888776531      01369999997654211 0 


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhC
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILG  220 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~  220 (331)
                                         .....|+.+|.+.+.+++.++.+.   +++++++||+.++|+.......   ........+
T Consensus       152 -------------------~~~~~Y~~sKaa~~~~~~~la~~~~~~~i~v~~i~pg~v~~~~~~~~~~---~~~~~~~~~  209 (248)
T PRK06123        152 -------------------GEYIDYAASKGAIDTMTIGLAKEVAAEGIRVNAVRPGVIYTEIHASGGE---PGRVDRVKA  209 (248)
T ss_pred             -------------------CCccchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCchhhccCC---HHHHHHHHh
Confidence                               001259999999999999887764   8999999999999985322111   111111111


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEec
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSS  260 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~  260 (331)
                      . ..+.     .+.+++|+++++++++....   .+..|++.+
T Consensus       210 ~-~p~~-----~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~g  246 (248)
T PRK06123        210 G-IPMG-----RGGTAEEVARAILWLLSDEASYTTGTFIDVSG  246 (248)
T ss_pred             c-CCCC-----CCcCHHHHHHHHHHHhCccccCccCCEEeecC
Confidence            1 1111     34578999999999887542   344667654

>PRK05717 oxidoreductase; Validated

Probab=99.86  E-value=3.4e-20  Score=157.45  Aligned_cols=215  Identities=15%  Similarity=0.110  Sum_probs=148.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|+|+||||+|+||++++++|+++|++|++++|+.     .....+.  ...   ..++.++.+|+.|.+++.++++  
T Consensus         9 ~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~-----~~~~~~~--~~~---~~~~~~~~~Dl~~~~~~~~~~~~~   78 (255)
T PRK05717          9 NGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR-----ERGSKVA--KAL---GENAWFIAMDVADEAQVAAGVAEV   78 (255)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH-----HHHHHHH--HHc---CCceEEEEccCCCHHHHHHHHHHH
Confidence            357899999999999999999999999999998876     2221111  111   1357889999999988766543  


Q ss_pred             -----CccEEEEecccCCCC--------CCChhhHHHHHHHHHHHHHHHHHHhc--CCccEEEEecccceeecCCCCCCc
Q 020104           82 -----GCTGVLHVATPVDFE--------DKEPEEVITQRAINGTLGILKSCLKS--GTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~--------~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                           ++|+|||+|+.....        .+++. ..+++|+.++.++++++...  ....++|++||...+...      
T Consensus        79 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~-~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~~~------  151 (255)
T PRK05717         79 LGQFGRLDALVCNAAIADPHNTTLESLSLAHWN-RVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQSE------  151 (255)
T ss_pred             HHHhCCCCEEEECCCcccCCCCChhhCCHHHHH-HHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcCCC------
Confidence                 489999999865321        11233 78899999999999999642  113689999997655211      


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc--CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcc
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH--GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREE  224 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~  224 (331)
                                      +..+.|+.+|.+.+.+++.++.++  +++++.++|+.+.++......   ........... ..
T Consensus       152 ----------------~~~~~Y~~sKaa~~~~~~~la~~~~~~i~v~~i~Pg~i~t~~~~~~~---~~~~~~~~~~~-~~  211 (255)
T PRK05717        152 ----------------PDTEAYAASKGGLLALTHALAISLGPEIRVNAVSPGWIDARDPSQRR---AEPLSEADHAQ-HP  211 (255)
T ss_pred             ----------------CCCcchHHHHHHHHHHHHHHHHHhcCCCEEEEEecccCcCCcccccc---chHHHHHHhhc-CC
Confidence                            113469999999999999988875  589999999999987432211   01111111111 11


Q ss_pred             cccCCCccceeHHHHHHHHHHhhcCCCC---CceEEEec
Q 020104          225 YGFLLNTSMVHVDDVARAHIFLLEYPDA---KGRYICSS  260 (331)
Q Consensus       225 ~~~~~~~~~i~v~D~a~~~~~~~~~~~~---~~~~~~~~  260 (331)
                      .     ..+.+.+|++.++.+++.....   +..+.+.+
T Consensus       212 ~-----~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~g  245 (255)
T PRK05717        212 A-----GRVGTVEDVAAMVAWLLSRQAGFVTGQEFVVDG  245 (255)
T ss_pred             C-----CCCcCHHHHHHHHHHHcCchhcCccCcEEEECC
Confidence            1     2578999999999998865322   33444544

>PLN02253 xanthoxin dehydrogenase

Probab=99.86  E-value=3.6e-20  Score=159.43  Aligned_cols=221  Identities=19%  Similarity=0.180  Sum_probs=149.0

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      +|++|||||+|+||++++++|+++|++|++++|+.     ...+.+.  .++ ....++.++++|+.|.+++.+++.   
T Consensus        18 ~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~-----~~~~~~~--~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~~   89 (280)
T PLN02253         18 GKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQD-----DLGQNVC--DSL-GGEPNVCFFHCDVTVEDDVSRAVDFTV   89 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH-----HHHHHHH--HHh-cCCCceEEEEeecCCHHHHHHHHHHHH
Confidence            57899999999999999999999999999999876     2221111  111 112468899999999998887765   


Q ss_pred             ----CccEEEEecccCCCC--------CCChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCCCCCC
Q 020104           82 ----GCTGVLHVATPVDFE--------DKEPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ----~~d~Vih~a~~~~~~--------~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                          ++|+|||+|+.....        .+++ +..+++|+.++.++++++...    + ..++|++||.....+.     
T Consensus        90 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~-~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~ii~isS~~~~~~~-----  162 (280)
T PLN02253         90 DKFGTLDIMVNNAGLTGPPCPDIRNVELSEF-EKVFDVNVKGVFLGMKHAARIMIPLK-KGSIVSLCSVASAIGG-----  162 (280)
T ss_pred             HHhCCCCEEEECCCcCCCCCCCcccCCHHHH-HHHHhHhhHHHHHHHHHHHHHHHhcC-CceEEEecChhhcccC-----
Confidence                689999999864311        1123 378999999999988877642    2 3589999886543211     


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCcc--HHHHHH---H
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGS--VRSSLA---L  217 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~--~~~~~~---~  217 (331)
                                       +....|+.+|.+.|.+++.++.+.   +++++.++|+.+.++......+..  ......   .
T Consensus       163 -----------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~  225 (280)
T PLN02253        163 -----------------LGPHAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPYAVPTALALAHLPEDERTEDALAGFRA  225 (280)
T ss_pred             -----------------CCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccccccccccccchhhhhhhhHH
Confidence                             112369999999999999988764   799999999999876422111110  001110   0


Q ss_pred             HhCCCcccccCCCccceeHHHHHHHHHHhhcCCCC---CceEEEecc
Q 020104          218 ILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDA---KGRYICSSH  261 (331)
Q Consensus       218 ~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~---~~~~~~~~~  261 (331)
                      .......+    ....++.+|+++++++++.....   +..+++++.
T Consensus       226 ~~~~~~~l----~~~~~~~~dva~~~~~l~s~~~~~i~G~~i~vdgG  268 (280)
T PLN02253        226 FAGKNANL----KGVELTVDDVANAVLFLASDEARYISGLNLMIDGG  268 (280)
T ss_pred             HhhcCCCC----cCCCCCHHHHHHHHHhhcCcccccccCcEEEECCc
Confidence            00111111    02457899999999999875432   334566543

>PRK09186 flagellin modification protein A; Provisional

Probab=99.86  E-value=2.3e-20  Score=158.63  Aligned_cols=223  Identities=17%  Similarity=0.164  Sum_probs=145.3

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      +|+||||||+|+||+++++.|++.|++|++++|+.     +..+.. ..+.... ....+.++.+|+.|++++.++++  
T Consensus         4 ~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~-----~~~~~~~~~l~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~   77 (256)
T PRK09186          4 GKTILITGAGGLIGSALVKAILEAGGIVIAADIDK-----EALNELLESLGKEF-KSKKLSLVELDITDQESLEEFLSKS   77 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCh-----HHHHHHHHHHHhhc-CCCceeEEEecCCCHHHHHHHHHHH
Confidence            57999999999999999999999999999999987     222211 1111110 11346677999999998888775  


Q ss_pred             -----CccEEEEecccCCC------CCC--ChhhHHHHHHHHHHHHHHHH----HHhcCCccEEEEecccceeecCCCCC
Q 020104           82 -----GCTGVLHVATPVDF------EDK--EPEEVITQRAINGTLGILKS----CLKSGTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~------~~~--~~~~~~~~~n~~~~~~l~~~----~~~~~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                           ++|+|||+|+....      ...  +.....+++|+.++..++++    +++.+ .+++|++||.+.+.  ... 
T Consensus        78 ~~~~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~~--~~~-  153 (256)
T PRK09186         78 AEKYGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQG-GGNLVNISSIYGVV--APK-  153 (256)
T ss_pred             HHHcCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcC-CceEEEEechhhhc--ccc-
Confidence                 38999999974321      111  11236677888777655554    44455 67999999976543  111 


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                      ....++++         ..+...|+.+|...+.+.+.++.+   .++++++++|+.++++..     ..   ........
T Consensus       154 ~~~~~~~~---------~~~~~~Y~~sK~a~~~l~~~la~e~~~~~i~v~~i~Pg~~~~~~~-----~~---~~~~~~~~  216 (256)
T PRK09186        154 FEIYEGTS---------MTSPVEYAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQP-----EA---FLNAYKKC  216 (256)
T ss_pred             chhccccc---------cCCcchhHHHHHHHHHHHHHHHHHhCcCCeEEEEEecccccCCCC-----HH---HHHHHHhc
Confidence            11122221         111236999999999999877775   379999999998876531     11   11111111


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCCC--Cce-EEEec
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPDA--KGR-YICSS  260 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~--~~~-~~~~~  260 (331)
                      . .     ...+++.+|+|+++++++.+...  .|. +.+.+
T Consensus       217 ~-~-----~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~  252 (256)
T PRK09186        217 C-N-----GKGMLDPDDICGTLVFLLSDQSKYITGQNIIVDD  252 (256)
T ss_pred             C-C-----ccCCCCHHHhhhhHhheeccccccccCceEEecC
Confidence            1 1     12678999999999999975532  344 44544

>PRK09134 short chain dehydrogenase; Provisional

Probab=99.86  E-value=5.6e-20  Score=156.37  Aligned_cols=222  Identities=16%  Similarity=0.137  Sum_probs=149.6

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      .++|++|||||+|+||+++++.|++.|++|+++.|...    ...... ..+..   ...++.++.+|+.|.+++.+++.
T Consensus         7 ~~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~Dl~d~~~~~~~~~   79 (258)
T PRK09134          7 AAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSR----DEAEALAAEIRA---LGRRAVALQADLADEAEVRALVA   79 (258)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCH----HHHHHHHHHHHh---cCCeEEEEEcCCCCHHHHHHHHH
Confidence            45678999999999999999999999999988876541    111111 11111   12467889999999988887764


Q ss_pred             -------CccEEEEecccCCCC---CC--ChhhHHHHHHHHHHHHHHHHHHhcC---CccEEEEecccceeecCCCCCCc
Q 020104           82 -------GCTGVLHVATPVDFE---DK--EPEEVITQRAINGTLGILKSCLKSG---TVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -------~~d~Vih~a~~~~~~---~~--~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                             ++|+|||+|+.....   ..  +..+..+++|+.++.++++++....   ...++|++||...+.  .     
T Consensus        80 ~~~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~--~-----  152 (258)
T PRK09134         80 RASAALGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWN--L-----  152 (258)
T ss_pred             HHHHHcCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcC--C-----
Confidence                   479999999864421   11  1223788999999999999877532   135888888754431  0     


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc--CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcc
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH--GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREE  224 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~  224 (331)
                                     .+....|+.+|.+.+.+.+.++.+.  +++++.++||.+......     ....+......  ..
T Consensus       153 ---------------~p~~~~Y~~sK~a~~~~~~~la~~~~~~i~v~~i~PG~v~t~~~~-----~~~~~~~~~~~--~~  210 (258)
T PRK09134        153 ---------------NPDFLSYTLSKAALWTATRTLAQALAPRIRVNAIGPGPTLPSGRQ-----SPEDFARQHAA--TP  210 (258)
T ss_pred             ---------------CCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecccccCCccc-----ChHHHHHHHhc--CC
Confidence                           0112479999999999999988765  489999999988764321     11111111111  11


Q ss_pred             cccCCCccceeHHHHHHHHHHhhcCCCCCc-eEEEec-cccCH
Q 020104          225 YGFLLNTSMVHVDDVARAHIFLLEYPDAKG-RYICSS-HTLTI  265 (331)
Q Consensus       225 ~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~-~~~~~~-~~~s~  265 (331)
                      ++     ...+++|+|++++++++++..+| .+++++ ..+++
T Consensus       211 ~~-----~~~~~~d~a~~~~~~~~~~~~~g~~~~i~gg~~~~~  248 (258)
T PRK09134        211 LG-----RGSTPEEIAAAVRYLLDAPSVTGQMIAVDGGQHLAW  248 (258)
T ss_pred             CC-----CCcCHHHHHHHHHHHhcCCCcCCCEEEECCCeeccc
Confidence            11     45789999999999998776555 556654 43443

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=99.86  E-value=4.3e-20  Score=156.07  Aligned_cols=202  Identities=18%  Similarity=0.250  Sum_probs=140.2

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc----
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA----   81 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----   81 (331)
                      |+|+||||||+||.++++.|+++|++|++++|++     .....   +....  ..++.++.+|+.|.+++.++++    
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~-----~~~~~---~~~~~--~~~~~~~~~Dl~~~~~i~~~~~~~~~   70 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQ-----ERLQE---LKDEL--GDNLYIAQLDVRNRAAIEEMLASLPA   70 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCH-----HHHHH---HHHHh--ccceEEEEecCCCHHHHHHHHHHHHH
Confidence            4799999999999999999999999999999987     22222   11111  1367889999999988877664    


Q ss_pred             ---CccEEEEecccCCC-------CCCChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCCCCcc
Q 020104           82 ---GCTGVLHVATPVDF-------EDKEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 ---~~d~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                         ++|+|||+|+....       ..+++ +..+++|+.++..+++++    ++.+ .+++|++||.....  .      
T Consensus        71 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~--~------  140 (248)
T PRK10538         71 EWRNIDVLVNNAGLALGLEPAHKASVEDW-ETMIDTNNKGLVYMTRAVLPGMVERN-HGHIINIGSTAGSW--P------  140 (248)
T ss_pred             HcCCCCEEEECCCccCCCCCcccCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEECCcccCC--C------
Confidence               68999999985321       11122 367899999966655554    4555 67999999965431  0      


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCC-CCccHHHHHHHHhCCCc
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPK-FAGSVRSSLALILGNRE  223 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~  223 (331)
                                    ..+.+.|+.+|...+.+.+.++.+.   ++++++++||.+.|+..... ....... ...      
T Consensus       141 --------------~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~i~~~~~~~~~~~~~~~~-~~~------  199 (248)
T PRK10538        141 --------------YAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGK-AEK------  199 (248)
T ss_pred             --------------CCCCchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCeecccccchhhccCcHHH-HHh------
Confidence                          1123479999999999999887654   79999999999987643210 0000000 000      


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCCC
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYPD  251 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~  251 (331)
                      .+   ....++..+|+|+++++++..+.
T Consensus       200 ~~---~~~~~~~~~dvA~~~~~l~~~~~  224 (248)
T PRK10538        200 TY---QNTVALTPEDVSEAVWWVATLPA  224 (248)
T ss_pred             hc---cccCCCCHHHHHHHHHHHhcCCC
Confidence            00   01245789999999999997653

>PRK12937 short chain dehydrogenase; Provisional

Probab=99.85  E-value=4.6e-20  Score=155.69  Aligned_cols=221  Identities=15%  Similarity=0.167  Sum_probs=149.9

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHH
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      |..+.++|+||||+|+||+++++.|+++|++|+++.|+.+    ..... .+.+.   ....++.++.+|+.|.+++.++
T Consensus         1 ~~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~   73 (245)
T PRK12937          1 MTLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSA----AAADELVAEIE---AAGGRAIAVQADVADAAAVTRL   73 (245)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCH----HHHHHHHHHHH---hcCCeEEEEECCCCCHHHHHHH
Confidence            6667789999999999999999999999999988877652    11111 11111   1124688999999999888887


Q ss_pred             hc-------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCCCC
Q 020104           80 IA-------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        80 ~~-------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                      ++       ++|+|||+|+.....      ..+. +..+++|+.++.++++++.+.- ...++|++||..... +     
T Consensus        74 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~-~-----  146 (245)
T PRK12937         74 FDAAETAFGRIDVLVNNAGVMPLGTIADFDLEDF-DRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIAL-P-----  146 (245)
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHH-HHHHhhhchHHHHHHHHHHHHhccCcEEEEEeeccccC-C-----
Confidence            75       589999999865421      1122 3678899999999998887541 135899999865432 1     


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                      .++.+.|+.+|...+.+++.++.++   ++++++++|+.+-++.......  .. ....+... 
T Consensus       147 ----------------~~~~~~Y~~sK~a~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~--~~-~~~~~~~~-  206 (245)
T PRK12937        147 ----------------LPGYGPYAASKAAVEGLVHVLANELRGRGITVNAVAPGPVATELFFNGKS--AE-QIDQLAGL-  206 (245)
T ss_pred             ----------------CCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCccCchhcccCC--HH-HHHHHHhc-
Confidence                            1224579999999999999887653   7899999999887653211111  11 11111111 


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCCC---CceEEEec
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPDA---KGRYICSS  260 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~---~~~~~~~~  260 (331)
                      ..+     ..+.+.+|+++++.+++..+..   +..+++++
T Consensus       207 ~~~-----~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~  242 (245)
T PRK12937        207 APL-----ERLGTPEEIAAAVAFLAGPDGAWVNGQVLRVNG  242 (245)
T ss_pred             CCC-----CCCCCHHHHHHHHHHHcCccccCccccEEEeCC
Confidence            111     1456889999999999875432   33455654

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.85  E-value=7.2e-20  Score=155.42  Aligned_cols=216  Identities=17%  Similarity=0.139  Sum_probs=144.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      +|+++||||+|+||++++++|+++|++|+++.|+..       ...+.+..     .++.++.+|+.|.+++.++++   
T Consensus         7 ~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~-------~~~~~l~~-----~~~~~~~~Dl~~~~~~~~~~~~~~   74 (255)
T PRK06463          7 GKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAE-------NEAKELRE-----KGVFTIKCDVGNRDQVKKSKEVVE   74 (255)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcH-------HHHHHHHh-----CCCeEEEecCCCHHHHHHHHHHHH
Confidence            478999999999999999999999999998877651       11112211     247889999999998887764   


Q ss_pred             ----CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHH----HHHHHhcCCccEEEEecccceeecCCCCCCcc
Q 020104           82 ----GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGI----LKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 ----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l----~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                          ++|+|||+|+....      ...++ +..+++|+.++..+    ++.+++.+ ..++|++||...++..       
T Consensus        75 ~~~~~id~li~~ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~~~~~~l~~~~~~~-~g~iv~isS~~~~~~~-------  145 (255)
T PRK06463         75 KEFGRVDVLVNNAGIMYLMPFEEFDEEKY-NKMIKINLNGAIYTTYEFLPLLKLSK-NGAIVNIASNAGIGTA-------  145 (255)
T ss_pred             HHcCCCCEEEECCCcCCCCChhhCCHHHH-HHHHhHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcCHHhCCCC-------
Confidence                58999999986431      11123 36788999996554    45555444 5799999997665311       


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCC-CccHHHHHHHHhCCCc
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKF-AGSVRSSLALILGNRE  223 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~  223 (331)
                                    .+....|+.+|.+.+.+++.++.+   .+++++.++||.+-.+-..... .............. .
T Consensus       146 --------------~~~~~~Y~asKaa~~~~~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~-~  210 (255)
T PRK06463        146 --------------AEGTTFYAITKAGIIILTRRLAFELGKYGIRVNAVAPGWVETDMTLSGKSQEEAEKLRELFRNK-T  210 (255)
T ss_pred             --------------CCCccHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCCCchhhcccCccchHHHHHHHHhC-C
Confidence                          011346999999999999998865   3799999999988655321100 11111111111111 1


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                      .+     ..+...+|+++++++++....  ..| .+.+.+.
T Consensus       211 ~~-----~~~~~~~~va~~~~~l~s~~~~~~~G~~~~~dgg  246 (255)
T PRK06463        211 VL-----KTTGKPEDIANIVLFLASDDARYITGQVIVADGG  246 (255)
T ss_pred             Cc-----CCCcCHHHHHHHHHHHcChhhcCCCCCEEEECCC
Confidence            11     256789999999999987543  234 4556554

>PRK06500 short chain dehydrogenase; Provisional

Probab=99.85  E-value=6.7e-20  Score=155.05  Aligned_cols=208  Identities=19%  Similarity=0.176  Sum_probs=142.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      ++++|+||||+|+||++++++|+++|++|++++|+.     +......  .+.   ..++.++++|+.|.+++..+++  
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~-----~~~~~~~--~~~---~~~~~~~~~D~~~~~~~~~~~~~~   74 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFLAEGARVAITGRDP-----ASLEAAR--AEL---GESALVIRADAGDVAAQKALAQAL   74 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCH-----HHHHHHH--HHh---CCceEEEEecCCCHHHHHHHHHHH
Confidence            457899999999999999999999999999999876     2211111  111   1357788999999877665543  


Q ss_pred             -----CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhc--CCccEEEEecccceeecCCCCCCccc
Q 020104           82 -----GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKS--GTVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                           ++|+|||+|+.....      ..++ +..+++|+.++.++++++...  . ..++|++||..... +.       
T Consensus        75 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~-~~~~i~~~S~~~~~-~~-------  144 (249)
T PRK06500         75 AEAFGRLDAVFINAGVAKFAPLEDWDEAMF-DRSFNTNVKGPYFLIQALLPLLAN-PASIVLNGSINAHI-GM-------  144 (249)
T ss_pred             HHHhCCCCEEEECCCCCCCCChhhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHhc-CCEEEEEechHhcc-CC-------
Confidence                 589999999864421      1223 378999999999999999752  2 25788887754332 10       


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCC-C-CccHHHHHHHHhCCCc
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPK-F-AGSVRSSLALILGNRE  223 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~-~-~~~~~~~~~~~~~~~~  223 (331)
                                    +..++|+.+|.+.|.+++.++.+.   +++++++||+.++++..... . .............. .
T Consensus       145 --------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~-~  209 (249)
T PRK06500        145 --------------PNSSVYAASKAALLSLAKTLSGELLPRGIRVNAVSPGPVQTPLYGKLGLPEATLDAVAAQIQAL-V  209 (249)
T ss_pred             --------------CCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCCCHHHHhhccCccchHHHHHHHHhc-C
Confidence                          123479999999999998887654   89999999999998742210 0 11111111111111 1


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCCC
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYPD  251 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~  251 (331)
                      .+.     .+...+|+++++.+++..+.
T Consensus       210 ~~~-----~~~~~~~va~~~~~l~~~~~  232 (249)
T PRK06500        210 PLG-----RFGTPEEIAKAVLYLASDES  232 (249)
T ss_pred             CCC-----CCcCHHHHHHHHHHHcCccc
Confidence            111     35689999999999887543

>PRK06181 short chain dehydrogenase; Provisional

Probab=99.85  E-value=4.7e-20  Score=157.32  Aligned_cols=206  Identities=17%  Similarity=0.151  Sum_probs=145.1

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      +++||||||+|+||+++++.|+++|++|++++|+.     ...+.+ ..+..   ...++.++.+|+.|.+++.++++  
T Consensus         1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~-----~~~~~~~~~l~~---~~~~~~~~~~Dl~~~~~~~~~~~~~   72 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNE-----TRLASLAQELAD---HGGEALVVPTDVSDAEACERLIEAA   72 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHH
Confidence            36899999999999999999999999999999986     222211 11211   12468889999999988887765  


Q ss_pred             -----CccEEEEecccCCCC-CC---Ch--hhHHHHHHHHHHHHHHHHHHhc---CCccEEEEecccceeecCCCCCCcc
Q 020104           82 -----GCTGVLHVATPVDFE-DK---EP--EEVITQRAINGTLGILKSCLKS---GTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~-~~---~~--~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                           ++|+|||+|+..... ..   +.  ....+++|+.++.++++.+...   + ..++|++||...+...       
T Consensus        73 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~iv~~sS~~~~~~~-------  144 (263)
T PRK06181         73 VARFGGIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKAS-RGQIVVVSSLAGLTGV-------  144 (263)
T ss_pred             HHHcCCCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCEEEEEecccccCCC-------
Confidence                 589999999865421 11   11  1356899999999999988632   3 4689999997766311       


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcc
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREE  224 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~  224 (331)
                                     ++...|+.+|...+.+++.++.+   .++++++++||.+..+........         .+....
T Consensus       145 ---------------~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~~~---------~~~~~~  200 (263)
T PRK06181        145 ---------------PTRSGYAASKHALHGFFDSLRIELADDGVAVTVVCPGFVATDIRKRALDG---------DGKPLG  200 (263)
T ss_pred             ---------------CCccHHHHHHHHHHHHHHHHHHHhhhcCceEEEEecCccccCcchhhccc---------cccccc
Confidence                           12357999999999998877654   479999999999887642210000         011100


Q ss_pred             cccCCCccceeHHHHHHHHHHhhcCC
Q 020104          225 YGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       225 ~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      ........+++++|+|++++.++...
T Consensus       201 ~~~~~~~~~~~~~dva~~i~~~~~~~  226 (263)
T PRK06181        201 KSPMQESKIMSAEECAEAILPAIARR  226 (263)
T ss_pred             cccccccCCCCHHHHHHHHHHHhhCC
Confidence            01111137899999999999999753

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=99.85  E-value=1.2e-19  Score=145.50  Aligned_cols=206  Identities=18%  Similarity=0.219  Sum_probs=146.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      .|.++|||||+.||.+.++.|++.|++|++..|+.        ++++.+...... ..+.+...|++|.+++..+++   
T Consensus         6 ~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~--------drL~~la~~~~~-~~~~~~~~DVtD~~~~~~~i~~~~   76 (246)
T COG4221           6 GKVALITGASSGIGEATARALAEAGAKVVLAARRE--------ERLEALADEIGA-GAALALALDVTDRAAVEAAIEALP   76 (246)
T ss_pred             CcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccH--------HHHHHHHHhhcc-CceEEEeeccCCHHHHHHHHHHHH
Confidence            46799999999999999999999999999999998        333333321111 357888999999988666553   


Q ss_pred             ----CccEEEEecccCC------CCCCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCcc
Q 020104           82 ----GCTGVLHVATPVD------FEDKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 ----~~d~Vih~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                          ++|++||+||..-      ....++. .++++|+.|..+..++..    +++ ..++|++||......        
T Consensus        77 ~~~g~iDiLvNNAGl~~g~~~~~~~~~dw~-~Mid~Ni~G~l~~~~avLP~m~~r~-~G~IiN~~SiAG~~~--------  146 (246)
T COG4221          77 EEFGRIDILVNNAGLALGDPLDEADLDDWD-RMIDTNVKGLLNGTRAVLPGMVERK-SGHIINLGSIAGRYP--------  146 (246)
T ss_pred             HhhCcccEEEecCCCCcCChhhhCCHHHHH-HHHHHHHHHHHHHHHHhhhHHHhcC-CceEEEecccccccc--------
Confidence                6999999998543      2233455 899999999888777654    454 469999999764320        


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCC-CCCccHHHHHHHHhCCCc
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICP-KFAGSVRSSLALILGNRE  223 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~-~~~~~~~~~~~~~~~~~~  223 (331)
                                    -+..+.|+.+|.....+...+..+.   +++++.+-||.+-...... +....-........+   
T Consensus       147 --------------y~~~~vY~ATK~aV~~fs~~LR~e~~g~~IRVt~I~PG~v~~~~~s~v~~~g~~~~~~~~y~~---  209 (246)
T COG4221         147 --------------YPGGAVYGATKAAVRAFSLGLRQELAGTGIRVTVISPGLVETTEFSTVRFEGDDERADKVYKG---  209 (246)
T ss_pred             --------------CCCCccchhhHHHHHHHHHHHHHHhcCCCeeEEEecCceecceecccccCCchhhhHHHHhcc---
Confidence                          1224579999999888888777664   7999999999885542111 001011111111111   


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCCCCC
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYPDAK  253 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~  253 (331)
                             ...+..+|+|+++.++++.|..-
T Consensus       210 -------~~~l~p~dIA~~V~~~~~~P~~v  232 (246)
T COG4221         210 -------GTALTPEDIAEAVLFAATQPQHV  232 (246)
T ss_pred             -------CCCCCHHHHHHHHHHHHhCCCcc
Confidence                   26889999999999999998643

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.85  E-value=6e-20  Score=155.71  Aligned_cols=220  Identities=16%  Similarity=0.150  Sum_probs=148.5

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |..++|+|+||||+|+||+++++.|+++|++|+++.++..    ..   ...+....  ..++.++.+|+.|++++.+++
T Consensus         1 ~~l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~----~~---~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~   71 (253)
T PRK08642          1 MQISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSE----DA---AEALADEL--GDRAIALQADVTDREQVQAMF   71 (253)
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCH----HH---HHHHHHHh--CCceEEEEcCCCCHHHHHHHH
Confidence            5556689999999999999999999999999988766441    11   11111111  146788999999998888776


Q ss_pred             c-------C-ccEEEEecccCC---------CCCC--ChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEeccccee
Q 020104           81 A-------G-CTGVLHVATPVD---------FEDK--EPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAV  137 (331)
Q Consensus        81 ~-------~-~d~Vih~a~~~~---------~~~~--~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~  137 (331)
                      +       + +|++||+|+...         ....  +.....+++|+.++.++++++..    .+ ..++|++||....
T Consensus        72 ~~~~~~~g~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~g~iv~iss~~~~  150 (253)
T PRK08642         72 ATATEHFGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQG-FGRIINIGTNLFQ  150 (253)
T ss_pred             HHHHHHhCCCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcC-CeEEEEECCcccc
Confidence            4       2 899999997421         0000  11236789999999999998863    33 5699999985422


Q ss_pred             ecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHH
Q 020104          138 FYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSS  214 (331)
Q Consensus       138 ~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~  214 (331)
                      .   .                   ..|.+.|+.+|.+.+.+++.++.++   +++++.++||.+..+.......   ...
T Consensus       151 ~---~-------------------~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~v~t~~~~~~~~---~~~  205 (253)
T PRK08642        151 N---P-------------------VVPYHDYTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRTTDASAATP---DEV  205 (253)
T ss_pred             C---C-------------------CCCccchHHHHHHHHHHHHHHHHHhCccCeEEEEEeecccCCchhhccCC---HHH
Confidence            1   0                   1224479999999999999998764   7999999999987653221111   111


Q ss_pred             HHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC--C-CceEEEecc
Q 020104          215 LALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--A-KGRYICSSH  261 (331)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~-~~~~~~~~~  261 (331)
                      ..... ....+     ..+.+.+|+++++.+++..+.  . |..+.+.+.
T Consensus       206 ~~~~~-~~~~~-----~~~~~~~~va~~~~~l~~~~~~~~~G~~~~vdgg  249 (253)
T PRK08642        206 FDLIA-ATTPL-----RKVTTPQEFADAVLFFASPWARAVTGQNLVVDGG  249 (253)
T ss_pred             HHHHH-hcCCc-----CCCCCHHHHHHHHHHHcCchhcCccCCEEEeCCC
Confidence            11111 11222     268899999999999997542  2 334555543

>PRK07024 short chain dehydrogenase; Provisional

Probab=99.85  E-value=3.5e-20  Score=157.50  Aligned_cols=195  Identities=18%  Similarity=0.163  Sum_probs=140.3

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      +|+|+||||+|+||+++++.|+++|++|++++|+.     +....+.  .++... .++.++.+|+.|.+++.++++   
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~-----~~~~~~~--~~~~~~-~~~~~~~~Dl~~~~~i~~~~~~~~   73 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGATLGLVARRT-----DALQAFA--ARLPKA-ARVSVYAADVRDADALAAAAADFI   73 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHH--HhcccC-CeeEEEEcCCCCHHHHHHHHHHHH
Confidence            47999999999999999999999999999999986     2222211  111111 268899999999988877664   


Q ss_pred             ----CccEEEEecccCCCC---C-C--ChhhHHHHHHHHHHHHHHH----HHHhcCCccEEEEecccceeecCCCCCCcc
Q 020104           82 ----GCTGVLHVATPVDFE---D-K--EPEEVITQRAINGTLGILK----SCLKSGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 ----~~d~Vih~a~~~~~~---~-~--~~~~~~~~~n~~~~~~l~~----~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                          .+|++||+|+.....   . .  +.....+++|+.++.++++    ++++.+ ..++|++||...+...       
T Consensus        74 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~-~~~iv~isS~~~~~~~-------  145 (257)
T PRK07024         74 AAHGLPDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAAR-RGTLVGIASVAGVRGL-------  145 (257)
T ss_pred             HhCCCCCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcC-CCEEEEEechhhcCCC-------
Confidence                379999999864311   1 1  1123788899999988776    455555 5799999997654211       


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcc
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREE  224 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~  224 (331)
                                     +....|+.+|.+.+.+++.++.+   ++++++++||+.+.++....               ....
T Consensus       146 ---------------~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~---------------~~~~  195 (257)
T PRK07024        146 ---------------PGAGAYSASKAAAIKYLESLRVELRPAGVRVVTIAPGYIRTPMTAH---------------NPYP  195 (257)
T ss_pred             ---------------CCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCcCchhhc---------------CCCC
Confidence                           11346999999999999887643   48999999999998773211               0000


Q ss_pred             cccCCCccceeHHHHHHHHHHhhcCC
Q 020104          225 YGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       225 ~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      .     ..++..+|+++.++.++.+.
T Consensus       196 ~-----~~~~~~~~~a~~~~~~l~~~  216 (257)
T PRK07024        196 M-----PFLMDADRFAARAARAIARG  216 (257)
T ss_pred             C-----CCccCHHHHHHHHHHHHhCC
Confidence            0     02467999999999999764

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=99.85  E-value=8.7e-20  Score=160.10  Aligned_cols=191  Identities=18%  Similarity=0.146  Sum_probs=128.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      ++++|+||||+|+||.++++.|+++|++|++++|+.     .......  .++.....++.++.+|+.|.+++.++++  
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~-----~~~~~~~--~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~   77 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNL-----KKAEAAA--QELGIPPDSYTIIHIDLGDLDSVRRFVDDF   77 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHH--HHhhccCCceEEEEecCCCHHHHHHHHHHH
Confidence            467899999999999999999999999999999986     2222111  1111112468889999999998887764  


Q ss_pred             -----CccEEEEecccCCC-------CCCChhhHHHHHHHHHHHHHHHHHHhc----CC-ccEEEEecccceeecCCCCC
Q 020104           82 -----GCTGVLHVATPVDF-------EDKEPEEVITQRAINGTLGILKSCLKS----GT-VKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~  144 (331)
                           ++|+|||+||....       ...++ +..+++|+.++.++++++...    +. ..|+|++||...++......
T Consensus        78 ~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~~~  156 (322)
T PRK07453         78 RALGKPLDALVCNAAVYMPLLKEPLRSPQGY-ELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGGK  156 (322)
T ss_pred             HHhCCCccEEEECCcccCCCCCCCCCCHHHH-HHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccCCc
Confidence                 38999999986431       11123 378899999999888877642    21 25999999987653110111


Q ss_pred             CcccC----CCCCChh--h-------hhhcCCCCchhHhhHHHHHHHHHHHHHHc----CCcEEEeccCceeCCC
Q 020104          145 DMMDE----TFWSDVD--Y-------IRKLDSWGKSYAISKTLTERAALEFAEEH----GLDLVTLIPSMVVGPF  202 (331)
Q Consensus       145 ~~~~E----~~~~~~~--~-------~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~----~~~~~ilRp~~v~G~~  202 (331)
                      .+..+    ++.....  .       ......|.+.|+.||++.+.+++.+++++    +++++.+|||.|++..
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~  231 (322)
T PRK07453        157 IPIPAPADLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADTP  231 (322)
T ss_pred             cCCCCccchhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCCc
Confidence            11111    0000000  0       00112345789999999888888877764    7999999999998644

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=99.85  E-value=9.1e-21  Score=158.62  Aligned_cols=218  Identities=24%  Similarity=0.275  Sum_probs=148.5

Q ss_pred             EEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCccEEE
Q 020104            8 VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTGVL   87 (331)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vi   87 (331)
                      |+|+||||.+|+++++.|++.+++|.++.|+.      .......+..     .+++++.+|+.|.+++.++++++|+||
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~------~~~~~~~l~~-----~g~~vv~~d~~~~~~l~~al~g~d~v~   69 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDP------SSDRAQQLQA-----LGAEVVEADYDDPESLVAALKGVDAVF   69 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSS------HHHHHHHHHH-----TTTEEEES-TT-HHHHHHHHTTCSEEE
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEecc------chhhhhhhhc-----ccceEeecccCCHHHHHHHHcCCceEE
Confidence            79999999999999999999999999999987      2222222322     467889999999999999999999999


Q ss_pred             EecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCCCCch
Q 020104           88 HVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKS  167 (331)
Q Consensus        88 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~  167 (331)
                      .+.+...    .       .......+++++|++.+ +++||+.|....+    .      +..         ...|..+
T Consensus        70 ~~~~~~~----~-------~~~~~~~~li~Aa~~ag-Vk~~v~ss~~~~~----~------~~~---------~~~p~~~  118 (233)
T PF05368_consen   70 SVTPPSH----P-------SELEQQKNLIDAAKAAG-VKHFVPSSFGADY----D------ESS---------GSEPEIP  118 (233)
T ss_dssp             EESSCSC----C-------CHHHHHHHHHHHHHHHT--SEEEESEESSGT----T------TTT---------TSTTHHH
T ss_pred             eecCcch----h-------hhhhhhhhHHHhhhccc-cceEEEEEecccc----c------ccc---------cccccch
Confidence            8877543    1       11344578999999999 9999964443222    0      000         0112234


Q ss_pred             hHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC---cccccCCC-ccc-eeHHHHHHH
Q 020104          168 YAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR---EEYGFLLN-TSM-VHVDDVARA  242 (331)
Q Consensus       168 Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~-i~v~D~a~~  242 (331)
                      ....|...|+.+++    .+++++++||+.++......     +.. ........   ....++.. ..+ +..+|++++
T Consensus       119 ~~~~k~~ie~~l~~----~~i~~t~i~~g~f~e~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvg~~  188 (233)
T PF05368_consen  119 HFDQKAEIEEYLRE----SGIPYTIIRPGFFMENLLPP-----FAP-VVDIKKSKDVVTLPGPGNQKAVPVTDTRDVGRA  188 (233)
T ss_dssp             HHHHHHHHHHHHHH----CTSEBEEEEE-EEHHHHHTT-----THH-TTCSCCTSSEEEEETTSTSEEEEEEHHHHHHHH
T ss_pred             hhhhhhhhhhhhhh----ccccceeccccchhhhhhhh-----hcc-cccccccceEEEEccCCCccccccccHHHHHHH
Confidence            55678877877765    58999999999876542111     000 00011111   12222222 456 499999999


Q ss_pred             HHHhhcCCCCC--c-eEEEeccccCHHHHHHHHHhhCC
Q 020104          243 HIFLLEYPDAK--G-RYICSSHTLTIQEMAEFLSAKYP  277 (331)
Q Consensus       243 ~~~~~~~~~~~--~-~~~~~~~~~s~~e~~~~i~~~~~  277 (331)
                      ++.++.++...  + .+.++++.+|+.|+++.+.+.+|
T Consensus       189 va~il~~p~~~~~~~~~~~~~~~~t~~eia~~~s~~~G  226 (233)
T PF05368_consen  189 VAAILLDPEKHNNGKTIFLAGETLTYNEIAAILSKVLG  226 (233)
T ss_dssp             HHHHHHSGGGTTEEEEEEEGGGEEEHHHHHHHHHHHHT
T ss_pred             HHHHHcChHHhcCCEEEEeCCCCCCHHHHHHHHHHHHC
Confidence            99999987654  3 45677889999999999999887

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK12939 short chain dehydrogenase; Provisional

Probab=99.85  E-value=6.4e-20  Score=155.24  Aligned_cols=217  Identities=20%  Similarity=0.229  Sum_probs=148.8

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      +|+++||||+|+||+++++.|+++|++|++++|++     ...... ..++.   ...++.++.+|+.|.+++.++++  
T Consensus         7 ~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~   78 (250)
T PRK12939          7 GKRALVTGAARGLGAAFAEALAEAGATVAFNDGLA-----AEARELAAALEA---AGGRAHAIAADLADPASVQRFFDAA   78 (250)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCH-----HHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHH
Confidence            47899999999999999999999999999998876     222211 11111   12468899999999998887763  


Q ss_pred             -----CccEEEEecccCCCC---CC--ChhhHHHHHHHHHHHHHHHHHHhcC---CccEEEEecccceeecCCCCCCccc
Q 020104           82 -----GCTGVLHVATPVDFE---DK--EPEEVITQRAINGTLGILKSCLKSG---TVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~---~~--~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                           ++|+|||+++.....   ..  ...+..++.|+.++.++++++...-   ...++|++||...+...        
T Consensus        79 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~--------  150 (250)
T PRK12939         79 AAALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTALWGA--------  150 (250)
T ss_pred             HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhccCC--------
Confidence                 589999999864421   11  1123567899999999998876431   13599999996654211        


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCccc
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEY  225 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  225 (331)
                                    +....|+.+|...+.+++.++.+   .+++++.++||.+.++........   ......... ...
T Consensus       151 --------------~~~~~y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~~---~~~~~~~~~-~~~  212 (250)
T PRK12939        151 --------------PKLGAYVASKGAVIGMTRSLARELGGRGITVNAIAPGLTATEATAYVPAD---ERHAYYLKG-RAL  212 (250)
T ss_pred             --------------CCcchHHHHHHHHHHHHHHHHHHHhhhCEEEEEEEECCCCCccccccCCh---HHHHHHHhc-CCC
Confidence                          11336999999999999987755   379999999999877653221110   111111111 111


Q ss_pred             ccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEec
Q 020104          226 GFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSS  260 (331)
Q Consensus       226 ~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~  260 (331)
                           ..+++++|++++++.++....   .|..+.+.+
T Consensus       213 -----~~~~~~~dva~~~~~l~~~~~~~~~G~~i~~~g  245 (250)
T PRK12939        213 -----ERLQVPDDVAGAVLFLLSDAARFVTGQLLPVNG  245 (250)
T ss_pred             -----CCCCCHHHHHHHHHHHhCccccCccCcEEEECC
Confidence                 367899999999999997642   233455554

>PRK06841 short chain dehydrogenase; Provisional

Probab=99.85  E-value=1.1e-19  Score=154.28  Aligned_cols=215  Identities=18%  Similarity=0.161  Sum_probs=149.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+++||||||+|+||.+++++|+++|++|++++|+.     ........   ..  ...+..+.+|+.+.+++.+++.  
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~-----~~~~~~~~---~~--~~~~~~~~~Dl~~~~~~~~~~~~~   83 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSE-----DVAEVAAQ---LL--GGNAKGLVCDVSDSQSVEAAVAAV   83 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHH---hh--CCceEEEEecCCCHHHHHHHHHHH
Confidence            357899999999999999999999999999999986     22111111   11  1356789999999988877664  


Q ss_pred             -----CccEEEEecccCCCCC---C--ChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCCcc
Q 020104           82 -----GCTGVLHVATPVDFED---K--EPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~~---~--~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                           ++|+|||+|+......   .  +.....+++|+.++.++++++..    .+ .+++|++||.......       
T Consensus        84 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~~~-------  155 (255)
T PRK06841         84 ISAFGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAG-GGKIVNLASQAGVVAL-------  155 (255)
T ss_pred             HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcC-CceEEEEcchhhccCC-------
Confidence                 5799999998654211   1  11136789999999999998764    34 5799999997644211       


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcc
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREE  224 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~  224 (331)
                                     +....|+.+|.+.+.+.+.++.+.   +++++.++||.+..+........   ....... ....
T Consensus       156 ---------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~---~~~~~~~-~~~~  216 (255)
T PRK06841        156 ---------------ERHVAYCASKAGVVGMTKVLALEWGPYGITVNAISPTVVLTELGKKAWAG---EKGERAK-KLIP  216 (255)
T ss_pred             ---------------CCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCcCcCcccccccch---hHHHHHH-hcCC
Confidence                           112369999999999998887763   79999999999987643211110   0011111 1111


Q ss_pred             cccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEec
Q 020104          225 YGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSS  260 (331)
Q Consensus       225 ~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~  260 (331)
                      .     ..+.+.+|++++++.++..+.  ..| .+.+++
T Consensus       217 ~-----~~~~~~~~va~~~~~l~~~~~~~~~G~~i~~dg  250 (255)
T PRK06841        217 A-----GRFAYPEEIAAAALFLASDAAAMITGENLVIDG  250 (255)
T ss_pred             C-----CCCcCHHHHHHHHHHHcCccccCccCCEEEECC
Confidence            2     268899999999999997643  234 445554

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=99.85  E-value=1.6e-19  Score=152.64  Aligned_cols=220  Identities=17%  Similarity=0.153  Sum_probs=151.7

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |..++|+||||||+|+||.+++++|+++|++|++++|+..      ......+.+.   ..++.++.+|+.+.+++..++
T Consensus         1 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~------~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~   71 (248)
T TIGR01832         1 FSLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP------SETQQQVEAL---GRRFLSLTADLSDIEAIKALV   71 (248)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH------HHHHHHHHhc---CCceEEEECCCCCHHHHHHHH
Confidence            3445689999999999999999999999999999998651      1111112111   246889999999998887665


Q ss_pred             c-------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCCCC
Q 020104           81 A-------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        81 ~-------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~  143 (331)
                      +       ++|++||+|+.....      ..++ +..+++|+.++.++++++...    +...++|++||...+...   
T Consensus        72 ~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~---  147 (248)
T TIGR01832        72 DSAVEEFGHIDILVNNAGIIRRADAEEFSEKDW-DDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQGG---  147 (248)
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHH-HHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhccCC---
Confidence            3       589999999865421      1122 367889999999999887642    213589999998766311   


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhC
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILG  220 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~  220 (331)
                                         +....|+.+|.+.+.+++.++.+.   +++++.++||.+..+........  .........
T Consensus       148 -------------------~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~--~~~~~~~~~  206 (248)
T TIGR01832       148 -------------------IRVPSYTASKHGVAGLTKLLANEWAAKGINVNAIAPGYMATNNTQALRAD--EDRNAAILE  206 (248)
T ss_pred             -------------------CCCchhHHHHHHHHHHHHHHHHHhCccCcEEEEEEECcCcCcchhccccC--hHHHHHHHh
Confidence                               112369999999999999988874   79999999999987743211010  001111111


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCCC--CCceE-EEec
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKGRY-ICSS  260 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~-~~~~  260 (331)
                      . ..     ...++..+|+|+++++++....  ..|.+ .+.+
T Consensus       207 ~-~~-----~~~~~~~~dva~~~~~l~s~~~~~~~G~~i~~dg  243 (248)
T TIGR01832       207 R-IP-----AGRWGTPDDIGGPAVFLASSASDYVNGYTLAVDG  243 (248)
T ss_pred             c-CC-----CCCCcCHHHHHHHHHHHcCccccCcCCcEEEeCC
Confidence            1 11     1378999999999999997543  23544 3444

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK07985 oxidoreductase; Provisional

Probab=99.85  E-value=9.2e-20  Score=157.66  Aligned_cols=221  Identities=12%  Similarity=0.094  Sum_probs=149.1

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      .|++|||||+|+||+++++.|+++|++|++..|+...   ...+.+....  .....++.++.+|+.|.+++.++++   
T Consensus        49 ~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~Dl~~~~~~~~~~~~~~  123 (294)
T PRK07985         49 DRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEE---EDAQDVKKII--EECGRKAVLLPGDLSDEKFARSLVHEAH  123 (294)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcch---hhHHHHHHHH--HHcCCeEEEEEccCCCHHHHHHHHHHHH
Confidence            3689999999999999999999999999988765410   1111111111  1112457789999999987776653   


Q ss_pred             ----CccEEEEecccCC-------CCCCChhhHHHHHHHHHHHHHHHHHHhc-CCccEEEEecccceeecCCCCCCcccC
Q 020104           82 ----GCTGVLHVATPVD-------FEDKEPEEVITQRAINGTLGILKSCLKS-GTVKRVVYTSSNAAVFYNDKDVDMMDE  149 (331)
Q Consensus        82 ----~~d~Vih~a~~~~-------~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~~~~~E  149 (331)
                          ++|++||+|+...       ....++. ..+++|+.++..+++++... ..-.++|++||...+...         
T Consensus       124 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~-~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~~~---------  193 (294)
T PRK07985        124 KALGGLDIMALVAGKQVAIPDIADLTSEQFQ-KTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQPS---------  193 (294)
T ss_pred             HHhCCCCEEEECCCCCcCCCChhhCCHHHHH-HHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhccCC---------
Confidence                5899999998532       1122333 78999999999999988753 112589999998766311         


Q ss_pred             CCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccc
Q 020104          150 TFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYG  226 (331)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (331)
                                   +....|+.+|.+.+.+++.++.+   ++++++.++|+.+.++....... . ....... ...... 
T Consensus       194 -------------~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~i~PG~v~t~~~~~~~~-~-~~~~~~~-~~~~~~-  256 (294)
T PRK07985        194 -------------PHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQ-T-QDKIPQF-GQQTPM-  256 (294)
T ss_pred             -------------CCcchhHHHHHHHHHHHHHHHHHHhHhCcEEEEEECCcCccccccccCC-C-HHHHHHH-hccCCC-
Confidence                         11346999999999999988876   48999999999999885321100 0 0111111 111122 


Q ss_pred             cCCCccceeHHHHHHHHHHhhcCCCC---CceEEEecc
Q 020104          227 FLLNTSMVHVDDVARAHIFLLEYPDA---KGRYICSSH  261 (331)
Q Consensus       227 ~~~~~~~i~v~D~a~~~~~~~~~~~~---~~~~~~~~~  261 (331)
                          ..+...+|+++++++++.....   +..+.+.++
T Consensus       257 ----~r~~~pedva~~~~fL~s~~~~~itG~~i~vdgG  290 (294)
T PRK07985        257 ----KRAGQPAELAPVYVYLASQESSYVTAEVHGVCGG  290 (294)
T ss_pred             ----CCCCCHHHHHHHHHhhhChhcCCccccEEeeCCC
Confidence                2567899999999999976432   334555543

>PRK08264 short chain dehydrogenase; Validated

Probab=99.85  E-value=1.2e-19  Score=152.44  Aligned_cols=164  Identities=18%  Similarity=0.154  Sum_probs=126.6

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      |...+++|+||||+|+||++++++|+++|+ +|++++|+..     ....         ...++.++.+|+.|.+++.++
T Consensus         2 ~~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~-----~~~~---------~~~~~~~~~~D~~~~~~~~~~   67 (238)
T PRK08264          2 MDIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPE-----SVTD---------LGPRVVPLQLDVTDPASVAAA   67 (238)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChh-----hhhh---------cCCceEEEEecCCCHHHHHHH
Confidence            344557899999999999999999999998 9999999872     2111         124688999999999998888


Q ss_pred             hc---CccEEEEeccc-CCC------CCCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCC
Q 020104           80 IA---GCTGVLHVATP-VDF------EDKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        80 ~~---~~d~Vih~a~~-~~~------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                      ++   .+|+|||+|+. ...      ..+++ ...+++|+.++.++++++.    +.+ ..++|++||...+..      
T Consensus        68 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~v~~sS~~~~~~------  139 (238)
T PRK08264         68 AEAASDVTILVNNAGIFRTGSLLLEGDEDAL-RAEMETNYFGPLAMARAFAPVLAANG-GGAIVNVLSVLSWVN------  139 (238)
T ss_pred             HHhcCCCCEEEECCCcCCCCCccccCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcChhhccC------
Confidence            76   48999999987 221      11122 3678899999999999865    344 578999999766531      


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPF  202 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~  202 (331)
                                      ..+...|+.+|.+.+.+.+.++.+.   +++++++||+.+.++.
T Consensus       140 ----------------~~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t~~  183 (238)
T PRK08264        140 ----------------FPNLGTYSASKAAAWSLTQALRAELAPQGTRVLGVHPGPIDTDM  183 (238)
T ss_pred             ----------------CCCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeCCcccccc
Confidence                            1224579999999999999887654   7999999999997763

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=99.85  E-value=1.3e-19  Score=154.13  Aligned_cols=220  Identities=15%  Similarity=0.126  Sum_probs=149.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccc-cccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLS-FLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      +++++|||||+|+||.++++.|+++|++|++++|+.     +..+... .+..   ...++.++.+|+.|.+++.++++ 
T Consensus        11 ~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~-----~~~~~~~~~i~~---~~~~~~~~~~Dl~d~~~i~~~~~~   82 (259)
T PRK08213         11 SGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKA-----EELEEAAAHLEA---LGIDALWIAADVADEADIERLAEE   82 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH-----HHHHHHHHHHHh---cCCeEEEEEccCCCHHHHHHHHHH
Confidence            457899999999999999999999999999999976     2222111 1111   12467789999999988866553 


Q ss_pred             ------CccEEEEecccCCCC--CC---ChhhHHHHHHHHHHHHHHHHHHhc-----CCccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDFE--DK---EPEEVITQRAINGTLGILKSCLKS-----GTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~--~~---~~~~~~~~~n~~~~~~l~~~~~~~-----~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|+|||+|+.....  ..   +.....+++|+.++.++++++...     + ..++|++||...+......  
T Consensus        83 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~-~~~~v~~sS~~~~~~~~~~--  159 (259)
T PRK08213         83 TLERFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRG-YGRIINVASVAGLGGNPPE--  159 (259)
T ss_pred             HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcC-CeEEEEECChhhccCCCcc--
Confidence                  589999999854211  11   112367889999999999987654     4 5799999997665311110  


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                      ..+...|+.+|...+.+++.++.++   ++++++++|+.+-++....    .+.......... 
T Consensus       160 ----------------~~~~~~Y~~sKa~~~~~~~~~a~~~~~~gi~v~~v~Pg~~~t~~~~~----~~~~~~~~~~~~-  218 (259)
T PRK08213        160 ----------------VMDTIAYNTSKGAVINFTRALAAEWGPHGIRVNAIAPGFFPTKMTRG----TLERLGEDLLAH-  218 (259)
T ss_pred             ----------------ccCcchHHHHHHHHHHHHHHHHHHhcccCEEEEEEecCcCCCcchhh----hhHHHHHHHHhc-
Confidence                            0123579999999999999988764   7999999999886653221    111222112211 


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEec
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSS  260 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~  260 (331)
                      ...     ..+...+|+++++.+++....  ..| .+++.+
T Consensus       219 ~~~-----~~~~~~~~va~~~~~l~~~~~~~~~G~~~~~~~  254 (259)
T PRK08213        219 TPL-----GRLGDDEDLKGAALLLASDASKHITGQILAVDG  254 (259)
T ss_pred             CCC-----CCCcCHHHHHHHHHHHhCccccCccCCEEEECC
Confidence            111     145678999999998886542  234 445554

>PRK06523 short chain dehydrogenase; Provisional

Probab=99.85  E-value=2.1e-19  Score=153.08  Aligned_cols=213  Identities=20%  Similarity=0.213  Sum_probs=144.9

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      +|+||||||+|+||++++++|+++|++|++++|+..     ..           ...++.++.+|+.|.+++.++++   
T Consensus         9 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~-----~~-----------~~~~~~~~~~D~~~~~~~~~~~~~~~   72 (260)
T PRK06523          9 GKRALVTGGTKGIGAATVARLLEAGARVVTTARSRP-----DD-----------LPEGVEFVAADLTTAEGCAAVARAVL   72 (260)
T ss_pred             CCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChh-----hh-----------cCCceeEEecCCCCHHHHHHHHHHHH
Confidence            478999999999999999999999999999999862     10           01357889999999987776543   


Q ss_pred             ----CccEEEEecccCC--------CCCCChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCCCC
Q 020104           82 ----GCTGVLHVATPVD--------FEDKEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ----~~d~Vih~a~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                          ++|+|||+|+...        ....++. ..+++|+.++.++.+++    ++.+ ..++|++||...+..      
T Consensus        73 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~-~~~~~n~~~~~~~~~~~~~~~~~~~-~g~ii~isS~~~~~~------  144 (260)
T PRK06523         73 ERLGGVDILVHVLGGSSAPAGGFAALTDEEWQ-DELNLNLLAAVRLDRALLPGMIARG-SGVIIHVTSIQRRLP------  144 (260)
T ss_pred             HHcCCCCEEEECCcccccCCCCcccCCHHHHH-HHHhHhhHHHHHHHHHHHHHHHhcC-CcEEEEEecccccCC------
Confidence                5899999998532        1112233 67889999987776654    4444 568999999765420      


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCC-------ccHHHHH
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFA-------GSVRSSL  215 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~-------~~~~~~~  215 (331)
                       .              +.+...|+.+|...+.+++.++.+.   ++++++++||.+.++.......       .......
T Consensus       145 -~--------------~~~~~~Y~~sK~a~~~l~~~~a~~~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~  209 (260)
T PRK06523        145 -L--------------PESTTAYAAAKAALSTYSKSLSKEVAPKGVRVNTVSPGWIETEAAVALAERLAEAAGTDYEGAK  209 (260)
T ss_pred             -C--------------CCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccHHHHHHHHHhhcCCCHHHHH
Confidence             0              1124579999999999999887654   7999999999998875321000       0000000


Q ss_pred             HHH-hC-CCcccccCCCccceeHHHHHHHHHHhhcCCC--C-CceEEEecc
Q 020104          216 ALI-LG-NREEYGFLLNTSMVHVDDVARAHIFLLEYPD--A-KGRYICSSH  261 (331)
Q Consensus       216 ~~~-~~-~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~-~~~~~~~~~  261 (331)
                      ..+ .. .....     ..+...+|+++++.+++....  . +..+.+.+.
T Consensus       210 ~~~~~~~~~~p~-----~~~~~~~~va~~~~~l~s~~~~~~~G~~~~vdgg  255 (260)
T PRK06523        210 QIIMDSLGGIPL-----GRPAEPEEVAELIAFLASDRAASITGTEYVIDGG  255 (260)
T ss_pred             HHHHHHhccCcc-----CCCCCHHHHHHHHHHHhCcccccccCceEEecCC
Confidence            000 00 00111     246688999999999997542  2 345666553

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=99.85  E-value=6e-20  Score=155.13  Aligned_cols=207  Identities=16%  Similarity=0.154  Sum_probs=138.3

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEE-ecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTT-VRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      |+++|||||+|+||++++++|+++|++|+++ .|+.     +.... ...+..   ...++..+.+|+.|.+++.++++ 
T Consensus         1 ~~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~-----~~~~~~~~~~~~---~~~~~~~~~~D~~d~~~i~~~~~~   72 (247)
T PRK09730          1 MAIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNL-----HAAQEVVNLITQ---AGGKAFVLQADISDENQVVAMFTA   72 (247)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCh-----HHHHHHHHHHHh---CCCeEEEEEccCCCHHHHHHHHHH
Confidence            3689999999999999999999999999875 4544     11111 111111   12357889999999998887765 


Q ss_pred             ------CccEEEEecccCCCC-------CCChhhHHHHHHHHHHHHHHHHHHhcC------CccEEEEecccceeecCCC
Q 020104           82 ------GCTGVLHVATPVDFE-------DKEPEEVITQRAINGTLGILKSCLKSG------TVKRVVYTSSNAAVFYNDK  142 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~-------~~~~~~~~~~~n~~~~~~l~~~~~~~~------~~~~~v~~SS~~~~~~~~~  142 (331)
                            ++|+|||+|+.....       ..+. ...+++|+.++..+++++...-      ...+||++||...+... +
T Consensus        73 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~-~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~-~  150 (247)
T PRK09730         73 IDQHDEPLAALVNNAGILFTQCTVENLTAERI-NRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGA-P  150 (247)
T ss_pred             HHHhCCCCCEEEECCCCCCCCCccccCCHHHH-HHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCC-C
Confidence                  468999999864211       1112 3678899999988777654431      12479999997654311 0


Q ss_pred             CCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHh
Q 020104          143 DVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALIL  219 (331)
Q Consensus       143 ~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~  219 (331)
                                          .....|+.+|...+.+++.++.+   .+++++++||+.++++.......  .........
T Consensus       151 --------------------~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~i~pg~~~~~~~~~~~~--~~~~~~~~~  208 (247)
T PRK09730        151 --------------------GEYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGGE--PGRVDRVKS  208 (247)
T ss_pred             --------------------CcccchHhHHHHHHHHHHHHHHHHHHhCeEEEEEEeCCCcCcccccCCC--HHHHHHHHh
Confidence                                00125999999999998877654   48999999999999985432111  111111111


Q ss_pred             CCCcccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          220 GNREEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       220 ~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      ..  .+.     ...+.+|+++++++++..+
T Consensus       209 ~~--~~~-----~~~~~~dva~~~~~~~~~~  232 (247)
T PRK09730        209 NI--PMQ-----RGGQPEEVAQAIVWLLSDK  232 (247)
T ss_pred             cC--CCC-----CCcCHHHHHHHHHhhcChh
Confidence            11  111     2347899999999998754

>PRK06196 oxidoreductase; Provisional

Probab=99.84  E-value=1.2e-19  Score=158.68  Aligned_cols=219  Identities=14%  Similarity=0.083  Sum_probs=141.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      +|+|+||||+|+||.+++++|+++|++|++++|+.     +.....  ..++    .++.++.+|+.|.+++.++++   
T Consensus        26 ~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~-----~~~~~~--~~~l----~~v~~~~~Dl~d~~~v~~~~~~~~   94 (315)
T PRK06196         26 GKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRP-----DVAREA--LAGI----DGVEVVMLDLADLESVRAFAERFL   94 (315)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHH--HHHh----hhCeEEEccCCCHHHHHHHHHHHH
Confidence            47899999999999999999999999999999986     221111  1111    247889999999998877663   


Q ss_pred             ----CccEEEEecccCCC----CCCChhhHHHHHHHHHHHHHHH----HHHhcCCccEEEEecccceeecCCCCCCcccC
Q 020104           82 ----GCTGVLHVATPVDF----EDKEPEEVITQRAINGTLGILK----SCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDE  149 (331)
Q Consensus        82 ----~~d~Vih~a~~~~~----~~~~~~~~~~~~n~~~~~~l~~----~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E  149 (331)
                          ++|+|||+||....    ...+. +..+++|+.++..+.+    .+++.+ ..++|++||.......      ...
T Consensus        95 ~~~~~iD~li~nAg~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vSS~~~~~~~------~~~  166 (315)
T PRK06196         95 DSGRRIDILINNAGVMACPETRVGDGW-EAQFATNHLGHFALVNLLWPALAAGA-GARVVALSSAGHRRSP------IRW  166 (315)
T ss_pred             hcCCCCCEEEECCCCCCCCCccCCccH-HHHHHHhhHHHHHHHHHHHHHHHhcC-CCeEEEECCHHhccCC------CCc
Confidence                58999999986432    11223 3778999999655555    444554 4799999997543211      111


Q ss_pred             CCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccc
Q 020104          150 TFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYG  226 (331)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (331)
                      +++..    .....+...|+.+|.+.+.+.+.++.+   .++++++++||.+.++..... .................+.
T Consensus       167 ~~~~~----~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~t~~~~~~-~~~~~~~~~~~~~~~~~~~  241 (315)
T PRK06196        167 DDPHF----TRGYDKWLAYGQSKTANALFAVHLDKLGKDQGVRAFSVHPGGILTPLQRHL-PREEQVALGWVDEHGNPID  241 (315)
T ss_pred             cccCc----cCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCcccCCccccC-Chhhhhhhhhhhhhhhhhh
Confidence            11000    000123457999999999998888765   379999999999998853221 1000000000000000110


Q ss_pred             cCCCccceeHHHHHHHHHHhhcCCC
Q 020104          227 FLLNTSMVHVDDVARAHIFLLEYPD  251 (331)
Q Consensus       227 ~~~~~~~i~v~D~a~~~~~~~~~~~  251 (331)
                          ..+...+|.|..+++++..+.
T Consensus       242 ----~~~~~~~~~a~~~~~l~~~~~  262 (315)
T PRK06196        242 ----PGFKTPAQGAATQVWAATSPQ  262 (315)
T ss_pred             ----hhcCCHhHHHHHHHHHhcCCc
Confidence                024578999999999987543

>PRK07577 short chain dehydrogenase; Provisional

Probab=99.84  E-value=4.1e-19  Score=148.81  Aligned_cols=206  Identities=18%  Similarity=0.146  Sum_probs=142.4

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      .|+|+||||+|+||++++++|+++|++|+++.|+..     .  .           ...+++.+|+.|.+++.++++   
T Consensus         3 ~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~-----~--~-----------~~~~~~~~D~~~~~~~~~~~~~~~   64 (234)
T PRK07577          3 SRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAI-----D--D-----------FPGELFACDLADIEQTAATLAQIN   64 (234)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCcc-----c--c-----------cCceEEEeeCCCHHHHHHHHHHHH
Confidence            478999999999999999999999999999999872     1  0           012568899999988877765   


Q ss_pred             ---CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCCCCccc
Q 020104           82 ---GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        82 ---~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                         ++|+|||+|+.....      ..++. ..++.|+.++.++.+++    ++.+ .+++|++||...++  .       
T Consensus        65 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~-~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~--~-------  133 (234)
T PRK07577         65 EIHPVDAIVNNVGIALPQPLGKIDLAALQ-DVYDLNVRAAVQVTQAFLEGMKLRE-QGRIVNICSRAIFG--A-------  133 (234)
T ss_pred             HhCCCcEEEECCCCCCCCChHHCCHHHHH-HHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEccccccC--C-------
Confidence               589999999865421      11222 57888988877776655    4455 67999999987552  1       


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCccc
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEY  225 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  225 (331)
                                    +....|+.+|...+.+++.++.+   ++++++++|||.+.++......... .......... ...
T Consensus       134 --------------~~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~-~~~~~~~~~~-~~~  197 (234)
T PRK07577        134 --------------LDRTSYSAAKSALVGCTRTWALELAEYGITVNAVAPGPIETELFRQTRPVG-SEEEKRVLAS-IPM  197 (234)
T ss_pred             --------------CCchHHHHHHHHHHHHHHHHHHHHHhhCcEEEEEecCcccCcccccccccc-hhHHHHHhhc-CCC
Confidence                          11347999999999998887654   4899999999999876432111100 0011111111 111


Q ss_pred             ccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEec
Q 020104          226 GFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSS  260 (331)
Q Consensus       226 ~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~  260 (331)
                           ..+...+|++++++.++..+.  ..| .+.+.+
T Consensus       198 -----~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~~g  230 (234)
T PRK07577        198 -----RRLGTPEEVAAAIAFLLSDDAGFITGQVLGVDG  230 (234)
T ss_pred             -----CCCcCHHHHHHHHHHHhCcccCCccceEEEecC
Confidence                 135588999999999997653  233 445543

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.84  E-value=9.3e-20  Score=153.22  Aligned_cols=198  Identities=20%  Similarity=0.194  Sum_probs=143.1

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      +++++||||+|+||.+++++|+++|++|++++|++     ...... ..+..   ...++.++.+|+.+++++.++++  
T Consensus         7 ~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~   78 (239)
T PRK07666          7 GKNALITGAGRGIGRAVAIALAKEGVNVGLLARTE-----ENLKAVAEEVEA---YGVKVVIATADVSDYEEVTAAIEQL   78 (239)
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHH---hCCeEEEEECCCCCHHHHHHHHHHH
Confidence            46899999999999999999999999999999987     222211 11111   12468889999999998887775  


Q ss_pred             -----CccEEEEecccCCCC---CCCh--hhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCCcc
Q 020104           82 -----GCTGVLHVATPVDFE---DKEP--EEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~---~~~~--~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                           ++|+|||+|+.....   ..++  ..+.+++|+.++.++++++..    .+ .+++|++||...+...       
T Consensus        79 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~ss~~~~~~~-------  150 (239)
T PRK07666         79 KNELGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQ-SGDIINISSTAGQKGA-------  150 (239)
T ss_pred             HHHcCCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CcEEEEEcchhhccCC-------
Confidence                 689999999864321   1111  136789999999888887763    34 5789999997755311       


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcc
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREE  224 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~  224 (331)
                                     .+...|+.+|.+.+.+++.++.+   .+++++++|||.+.++.....         . ....   
T Consensus       151 ---------------~~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~v~pg~v~t~~~~~~---------~-~~~~---  202 (239)
T PRK07666        151 ---------------AVTSAYSASKFGVLGLTESLMQEVRKHNIRVTALTPSTVATDMAVDL---------G-LTDG---  202 (239)
T ss_pred             ---------------CCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCcchhhc---------c-cccc---
Confidence                           12346999999999888877654   489999999999987632110         0 0000   


Q ss_pred             cccCCCccceeHHHHHHHHHHhhcCC
Q 020104          225 YGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       225 ~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                          ....++..+|+++.+..++.++
T Consensus       203 ----~~~~~~~~~~~a~~~~~~l~~~  224 (239)
T PRK07666        203 ----NPDKVMQPEDLAEFIVAQLKLN  224 (239)
T ss_pred             ----CCCCCCCHHHHHHHHHHHHhCC
Confidence                1125678999999999999876

>PRK07454 short chain dehydrogenase; Provisional

Probab=99.84  E-value=1.1e-19  Score=152.98  Aligned_cols=203  Identities=19%  Similarity=0.219  Sum_probs=143.9

Q ss_pred             CCC-CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHH
Q 020104            1 MEE-GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDA   78 (331)
Q Consensus         1 M~~-~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~   78 (331)
                      |+. .||+++||||+|+||+.++++|+++|++|++++|+.     .....+ ..+.+   ...++.++.+|+.|.+++.+
T Consensus         1 ~~~~~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~   72 (241)
T PRK07454          1 MSLNSMPRALITGASSGIGKATALAFAKAGWDLALVARSQ-----DALEALAAELRS---TGVKAAAYSIDLSNPEAIAP   72 (241)
T ss_pred             CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHh---CCCcEEEEEccCCCHHHHHH
Confidence            443 456899999999999999999999999999999987     222221 11111   12468889999999988877


Q ss_pred             Hhc-------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCC
Q 020104           79 AIA-------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYND  141 (331)
Q Consensus        79 ~~~-------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~  141 (331)
                      +++       ++|+|||+|+.....      ..+. +..+++|+.++.++++++    ++.+ ..++|++||...+... 
T Consensus        73 ~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~isS~~~~~~~-  149 (241)
T PRK07454         73 GIAELLEQFGCPDVLINNAGMAYTGPLLEMPLSDW-QWVIQLNLTSVFQCCSAVLPGMRARG-GGLIINVSSIAARNAF-  149 (241)
T ss_pred             HHHHHHHHcCCCCEEEECCCccCCCchhhCCHHHH-HHHHHhccHHHHHHHHHHHHHHHhcC-CcEEEEEccHHhCcCC-
Confidence            664       489999999864321      1122 367889999888877765    3444 5799999998765311 


Q ss_pred             CCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHH
Q 020104          142 KDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALI  218 (331)
Q Consensus       142 ~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~  218 (331)
                                           ++...|+.+|...+.+.+.++.+   .+++++++||+.+-.+.......          
T Consensus       150 ---------------------~~~~~Y~~sK~~~~~~~~~~a~e~~~~gi~v~~i~pg~i~t~~~~~~~~----------  198 (241)
T PRK07454        150 ---------------------PQWGAYCVSKAALAAFTKCLAEEERSHGIRVCTITLGAVNTPLWDTETV----------  198 (241)
T ss_pred             ---------------------CCccHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCcccCCccccccc----------
Confidence                                 12347999999999998877644   48999999999987764221000          


Q ss_pred             hCCCcccccCCCccceeHHHHHHHHHHhhcCCC
Q 020104          219 LGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD  251 (331)
Q Consensus       219 ~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~  251 (331)
                         ....   ....++..+|+|+++++++..+.
T Consensus       199 ---~~~~---~~~~~~~~~~va~~~~~l~~~~~  225 (241)
T PRK07454        199 ---QADF---DRSAMLSPEQVAQTILHLAQLPP  225 (241)
T ss_pred             ---cccc---ccccCCCHHHHHHHHHHHHcCCc
Confidence               0000   01145789999999999998774

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.84  E-value=3.8e-19  Score=149.12  Aligned_cols=202  Identities=17%  Similarity=0.156  Sum_probs=143.0

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCC-ccHHHH
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHP-DGFDAA   79 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~   79 (331)
                      |..++|+++||||+|+||+++++.|+++|++|++++|+..     ..           ...++.++.+|+.+. +++.+.
T Consensus         1 ~~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~-----~~-----------~~~~~~~~~~D~~~~~~~~~~~   64 (235)
T PRK06550          1 QEFMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDK-----PD-----------LSGNFHFLQLDLSDDLEPLFDW   64 (235)
T ss_pred             CCCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcc-----cc-----------cCCcEEEEECChHHHHHHHHHh
Confidence            5666789999999999999999999999999999998762     11           014578899999887 333334


Q ss_pred             hcCccEEEEecccCCC-------CCCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCCccc
Q 020104           80 IAGCTGVLHVATPVDF-------EDKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        80 ~~~~d~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                      +.++|+|||+|+....       ..+++ ...+++|+.++.++++++..    .+ ..++|++||...+...        
T Consensus        65 ~~~id~lv~~ag~~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~~~--------  134 (235)
T PRK06550         65 VPSVDILCNTAGILDDYKPLLDTSLEEW-QHIFDTNLTSTFLLTRAYLPQMLERK-SGIIINMCSIASFVAG--------  134 (235)
T ss_pred             hCCCCEEEECCCCCCCCCCcccCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcChhhccCC--------
Confidence            4578999999985321       11123 36789999999999988763    33 4689999997654211        


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCccc
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEY  225 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  225 (331)
                                    +....|+.+|...+.+.+.++.+.   ++++++++|+.+.++........  ......... ....
T Consensus       135 --------------~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~pg~v~t~~~~~~~~~--~~~~~~~~~-~~~~  197 (235)
T PRK06550        135 --------------GGGAAYTASKHALAGFTKQLALDYAKDGIQVFGIAPGAVKTPMTAADFEP--GGLADWVAR-ETPI  197 (235)
T ss_pred             --------------CCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCccCcccccccCc--hHHHHHHhc-cCCc
Confidence                          112369999999999888877754   89999999999988754322211  111111111 1111


Q ss_pred             ccCCCccceeHHHHHHHHHHhhcCC
Q 020104          226 GFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       226 ~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                           ..+...+|+|+++++++...
T Consensus       198 -----~~~~~~~~~a~~~~~l~s~~  217 (235)
T PRK06550        198 -----KRWAEPEEVAELTLFLASGK  217 (235)
T ss_pred             -----CCCCCHHHHHHHHHHHcChh
Confidence                 25778999999999999754

>PRK12743 oxidoreductase; Provisional

Probab=99.84  E-value=1.4e-19  Score=153.70  Aligned_cols=218  Identities=15%  Similarity=0.093  Sum_probs=147.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      |+++++||||+|+||.+++++|+++|++|+++.|+..    ...+.+ ..+..   ...++.++.+|+.|++++.++++ 
T Consensus         1 ~~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~   73 (256)
T PRK12743          1 MAQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDE----EGAKETAEEVRS---HGVRAEIRQLDLSDLPEGAQALDK   73 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCCh----HHHHHHHHHHHh---cCCceEEEEccCCCHHHHHHHHHH
Confidence            3578999999999999999999999999998876541    111111 11111   12468899999999988877664 


Q ss_pred             ------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|+|||+|+.....      ..++ ...+++|+.++..+++++...    +.-+++|++||.....  .    
T Consensus        74 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~--~----  146 (256)
T PRK12743         74 LIQRLGRIDVLVNNAGAMTKAPFLDMDFDEW-RKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEHT--P----  146 (256)
T ss_pred             HHHHcCCCCEEEECCCCCCCCChhhCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeeccccC--C----
Confidence                  589999999864421      1122 377899999999999887653    1125899999964321  0    


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                      .++...|+.+|.+.+.+++.++.+.   +++++.++||.+.++..... ..   ....... ..
T Consensus       147 ----------------~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~Pg~~~t~~~~~~-~~---~~~~~~~-~~  205 (256)
T PRK12743        147 ----------------LPGASAYTAAKHALGGLTKAMALELVEHGILVNAVAPGAIATPMNGMD-DS---DVKPDSR-PG  205 (256)
T ss_pred             ----------------CCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCcccccc-Ch---HHHHHHH-hc
Confidence                            1224479999999999998887654   79999999999998753221 10   0111111 11


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                      ..+.     .+.+.+|+++++.+++....  ..| .+.+.+.
T Consensus       206 ~~~~-----~~~~~~dva~~~~~l~~~~~~~~~G~~~~~dgg  242 (256)
T PRK12743        206 IPLG-----RPGDTHEIASLVAWLCSEGASYTTGQSLIVDGG  242 (256)
T ss_pred             CCCC-----CCCCHHHHHHHHHHHhCccccCcCCcEEEECCC
Confidence            1111     45689999999999887543  234 4455543

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.84  E-value=1.5e-19  Score=152.61  Aligned_cols=219  Identities=16%  Similarity=0.150  Sum_probs=149.0

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEE-ecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHH
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTT-VRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDA   78 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~   78 (331)
                      |..++++||||||||+||.++++.|+++|++|+++ .|+.     .....+ ..+..   ...++.++.+|+.|++++.+
T Consensus         1 ~~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~   72 (247)
T PRK05565          1 MKLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINE-----EAAQELLEEIKE---EGGDAIAVKADVSSEEDVEN   72 (247)
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCH-----HHHHHHHHHHHh---cCCeEEEEECCCCCHHHHHH
Confidence            56677899999999999999999999999999998 8876     222111 11111   12468899999999998877


Q ss_pred             Hhc-------CccEEEEecccCCCC-----CCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCC
Q 020104           79 AIA-------GCTGVLHVATPVDFE-----DKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDK  142 (331)
Q Consensus        79 ~~~-------~~d~Vih~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~  142 (331)
                      ++.       ++|+|||+++.....     ..+..+..+++|+.++.++++++..    .+ .+++|++||...+...  
T Consensus        73 ~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~v~~sS~~~~~~~--  149 (247)
T PRK05565         73 LVEQIVEKFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRK-SGVIVNISSIWGLIGA--  149 (247)
T ss_pred             HHHHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEECCHhhccCC--
Confidence            764       689999999865321     1111236788999998888777654    34 5689999997665311  


Q ss_pred             CCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHh
Q 020104          143 DVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALIL  219 (331)
Q Consensus       143 ~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~  219 (331)
                                          +....|+.+|.+.+.+++.++.+.   +++++.+||+.+.++........   .......
T Consensus       150 --------------------~~~~~y~~sK~a~~~~~~~~~~~~~~~gi~~~~v~pg~v~t~~~~~~~~~---~~~~~~~  206 (247)
T PRK05565        150 --------------------SCEVLYSASKGAVNAFTKALAKELAPSGIRVNAVAPGAIDTEMWSSFSEE---DKEGLAE  206 (247)
T ss_pred             --------------------CCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCccCccccccChH---HHHHHHh
Confidence                                113369999998888887776643   89999999999876543321111   1111101


Q ss_pred             CCCcccccCCCccceeHHHHHHHHHHhhcCCC--CCce-EEEec
Q 020104          220 GNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKGR-YICSS  260 (331)
Q Consensus       220 ~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~  260 (331)
                        ...     ...+...+|++++++.++....  .+|. +.+.+
T Consensus       207 --~~~-----~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~~  243 (247)
T PRK05565        207 --EIP-----LGRLGKPEEIAKVVLFLASDDASYITGQIITVDG  243 (247)
T ss_pred             --cCC-----CCCCCCHHHHHHHHHHHcCCccCCccCcEEEecC
Confidence              011     1256789999999999987643  2444 34543

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=99.84  E-value=1.9e-19  Score=151.86  Aligned_cols=216  Identities=18%  Similarity=0.194  Sum_probs=146.8

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      +++++||||+|+||+++++.|+++|++|++++|+..    .....  ..........++.++.+|+.|.+++.++++   
T Consensus         2 ~k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~----~~~~~--~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   75 (245)
T PRK12824          2 KKIALVTGAKRGIGSAIARELLNDGYRVIATYFSGN----DCAKD--WFEEYGFTEDQVRLKELDVTDTEECAEALAEIE   75 (245)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcH----HHHHH--HHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence            468999999999999999999999999999999861    11111  111111122468899999999988877664   


Q ss_pred             ----CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHH----HHhcCCccEEEEecccceeecCCCCCCcc
Q 020104           82 ----GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKS----CLKSGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 ----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~----~~~~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                          ++|+|||+++....      ...++ +..++.|+.++.++.++    +++.+ ..++|++||...+...       
T Consensus        76 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~iss~~~~~~~-------  146 (245)
T PRK12824         76 EEEGPVDILVNNAGITRDSVFKRMSHQEW-NDVINTNLNSVFNVTQPLFAAMCEQG-YGRIINISSVNGLKGQ-------  146 (245)
T ss_pred             HHcCCCCEEEECCCCCCCCccccCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHHhC-CeEEEEECChhhccCC-------
Confidence                48999999986431      11122 36788999998887554    45555 6799999997655210       


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcc
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREE  224 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~  224 (331)
                                     +....|+.+|.+.+.+++.++.+   .++++++++|+.+.++.......    ......... ..
T Consensus       147 ---------------~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~----~~~~~~~~~-~~  206 (245)
T PRK12824        147 ---------------FGQTNYSAAKAGMIGFTKALASEGARYGITVNCIAPGYIATPMVEQMGP----EVLQSIVNQ-IP  206 (245)
T ss_pred             ---------------CCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEEcccCCcchhhcCH----HHHHHHHhc-CC
Confidence                           11336999999999888887753   37999999999998774322111    111111111 11


Q ss_pred             cccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEec
Q 020104          225 YGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSS  260 (331)
Q Consensus       225 ~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~  260 (331)
                      +     ..+...+|+++++..++....   .+..+++++
T Consensus       207 ~-----~~~~~~~~va~~~~~l~~~~~~~~~G~~~~~~~  240 (245)
T PRK12824        207 M-----KRLGTPEEIAAAVAFLVSEAAGFITGETISING  240 (245)
T ss_pred             C-----CCCCCHHHHHHHHHHHcCccccCccCcEEEECC
Confidence            2     256688999999998886532   245666654

>PRK07825 short chain dehydrogenase; Provisional

Probab=99.84  E-value=1.4e-19  Score=155.15  Aligned_cols=198  Identities=20%  Similarity=0.109  Sum_probs=141.0

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |..++++|+||||||.||++++++|+++|++|++++|++     +......  .++    ..+.++.+|+.|++++.+++
T Consensus         1 ~~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~-----~~~~~~~--~~~----~~~~~~~~D~~~~~~~~~~~   69 (273)
T PRK07825          1 DDLRGKVVAITGGARGIGLATARALAALGARVAIGDLDE-----ALAKETA--AEL----GLVVGGPLDVTDPASFAAFL   69 (273)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHH--HHh----ccceEEEccCCCHHHHHHHH
Confidence            555668999999999999999999999999999999987     2222111  111    24778899999998876665


Q ss_pred             c-------CccEEEEecccCCCC---CC--ChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCC
Q 020104           81 A-------GCTGVLHVATPVDFE---DK--EPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        81 ~-------~~d~Vih~a~~~~~~---~~--~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                      +       ++|++||+||.....   ..  +.....+++|+.++..+++++.    +.+ ..++|++||...+...    
T Consensus        70 ~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~----  144 (273)
T PRK07825         70 DAVEADLGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRG-RGHVVNVASLAGKIPV----  144 (273)
T ss_pred             HHHHHHcCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCEEEEEcCccccCCC----
Confidence            3       579999999864421   11  1123678899998888776654    455 6799999997654211    


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                                        +....|+.+|...+.+.+.+..+   .++++++++|+.+..+....               .
T Consensus       145 ------------------~~~~~Y~asKaa~~~~~~~l~~el~~~gi~v~~v~Pg~v~t~~~~~---------------~  191 (273)
T PRK07825        145 ------------------PGMATYCASKHAVVGFTDAARLELRGTGVHVSVVLPSFVNTELIAG---------------T  191 (273)
T ss_pred             ------------------CCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcCcchhhcc---------------c
Confidence                              12347999999888777766554   48999999999886542111               0


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCC
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPD  251 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~  251 (331)
                      .    ......++..+|+|++++.++.++.
T Consensus       192 ~----~~~~~~~~~~~~va~~~~~~l~~~~  217 (273)
T PRK07825        192 G----GAKGFKNVEPEDVAAAIVGTVAKPR  217 (273)
T ss_pred             c----cccCCCCCCHHHHHHHHHHHHhCCC
Confidence            0    0011257899999999999998764

>PRK06114 short chain dehydrogenase; Provisional

Probab=99.84  E-value=4.2e-19  Score=150.57  Aligned_cols=219  Identities=17%  Similarity=0.205  Sum_probs=147.3

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcc-ccccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSK-DLSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .++++|||||+|+||++++++|++.|++|++++|+.+    .... ....+..   ...++..+.+|+.|.+++.+++. 
T Consensus         7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~----~~~~~~~~~l~~---~~~~~~~~~~D~~~~~~i~~~~~~   79 (254)
T PRK06114          7 DGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTD----DGLAETAEHIEA---AGRRAIQIAADVTSKADLRAAVAR   79 (254)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcc----hHHHHHHHHHHh---cCCceEEEEcCCCCHHHHHHHHHH
Confidence            4578999999999999999999999999999998762    1111 1111211   12467889999999988887664 


Q ss_pred             ------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|+|||+|+.....      ..++ +..+++|+.++..+++++.    +.+ ..++|++||...+... .   
T Consensus        80 ~~~~~g~id~li~~ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~~~-~---  153 (254)
T PRK06114         80 TEAELGALTLAVNAAGIANANPAEEMEEEQW-QTVMDINLTGVFLSCQAEARAMLENG-GGSIVNIASMSGIIVN-R---  153 (254)
T ss_pred             HHHHcCCCCEEEECCCCCCCCChHhCCHHHH-HHHHhhcchhhHHHHHHHHHHHHhcC-CcEEEEECchhhcCCC-C---
Confidence                  479999999865421      1123 3778899999977776654    334 4699999997644211 0   


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                      ..+...|+.+|.+.+.+++.++.+   .++++++++||.+.++....  +.... ...... ..
T Consensus       154 ----------------~~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~PG~i~t~~~~~--~~~~~-~~~~~~-~~  213 (254)
T PRK06114        154 ----------------GLLQAHYNASKAGVIHLSKSLAMEWVGRGIRVNSISPGYTATPMNTR--PEMVH-QTKLFE-EQ  213 (254)
T ss_pred             ----------------CCCcchHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeecCccCccccc--ccchH-HHHHHH-hc
Confidence                            011346999999999999988764   37999999999998874321  11111 111111 11


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEec
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSS  260 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~  260 (331)
                      ..++     .+...+|++.++++++....  ..| .+.+.+
T Consensus       214 ~p~~-----r~~~~~dva~~~~~l~s~~~~~~tG~~i~~dg  249 (254)
T PRK06114        214 TPMQ-----RMAKVDEMVGPAVFLLSDAASFCTGVDLLVDG  249 (254)
T ss_pred             CCCC-----CCcCHHHHHHHHHHHcCccccCcCCceEEECc
Confidence            1222     56789999999999987543  233 445554

>PRK09291 short chain dehydrogenase; Provisional

Probab=99.84  E-value=1.1e-19  Score=154.48  Aligned_cols=214  Identities=18%  Similarity=0.157  Sum_probs=139.1

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc-Cc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA-GC   83 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-~~   83 (331)
                      +++||||||||+||++++++|+++|++|++++|+.     .....+.....  ....++.++.+|+.|++++..++. ++
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~-----~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~i   74 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIA-----PQVTALRAEAA--RRGLALRVEKLDLTDAIDRAQAAEWDV   74 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHH--hcCCcceEEEeeCCCHHHHHHHhcCCC
Confidence            57899999999999999999999999999999976     22222211111  112358889999999999988886 89


Q ss_pred             cEEEEecccCCCCC---C--ChhhHHHHHHHHHHHHHHHH----HHhcCCccEEEEecccceeecCCCCCCcccCCCCCC
Q 020104           84 TGVLHVATPVDFED---K--EPEEVITQRAINGTLGILKS----CLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSD  154 (331)
Q Consensus        84 d~Vih~a~~~~~~~---~--~~~~~~~~~n~~~~~~l~~~----~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~  154 (331)
                      |+|||+|+......   .  +..+..+++|+.++..+.+.    +++.+ .+++|++||...+...              
T Consensus        75 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~~SS~~~~~~~--------------  139 (257)
T PRK09291         75 DVLLNNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARG-KGKVVFTSSMAGLITG--------------  139 (257)
T ss_pred             CEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEEcChhhccCC--------------
Confidence            99999998644211   1  11225678898887666554    44555 5799999996543210              


Q ss_pred             hhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCC-C
Q 020104          155 VDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLL-N  230 (331)
Q Consensus       155 ~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  230 (331)
                              +....|+.+|.+.|.+++.++.+   .+++++++||+.+..+.... ........... ........... .
T Consensus       140 --------~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~~~~v~pg~~~t~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~  209 (257)
T PRK09291        140 --------PFTGAYCASKHALEAIAEAMHAELKPFGIQVATVNPGPYLTGFNDT-MAETPKRWYDP-ARNFTDPEDLAFP  209 (257)
T ss_pred             --------CCcchhHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccchhh-hhhhhhhhcch-hhHHHhhhhhhcc
Confidence                    11347999999999988877654   58999999999875432111 00000000000 00000000000 1


Q ss_pred             ccceeHHHHHHHHHHhhcCC
Q 020104          231 TSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       231 ~~~i~v~D~a~~~~~~~~~~  250 (331)
                      ..++..+|+++.++.++..+
T Consensus       210 ~~~~~~~~~~~~~~~~l~~~  229 (257)
T PRK09291        210 LEQFDPQEMIDAMVEVIPAD  229 (257)
T ss_pred             ccCCCHHHHHHHHHHHhcCC
Confidence            25578999999998887654

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=99.83  E-value=3e-19  Score=150.65  Aligned_cols=214  Identities=19%  Similarity=0.182  Sum_probs=145.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      +++++|||||+|+||+++++.|+++|+.|++..|+.     +..+.+..  ..   ..++.++.+|+.+.+++.++++  
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~-----~~~~~~~~--~~---~~~~~~~~~D~~~~~~~~~~~~~~   74 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRV-----EKLEALAA--EL---GERVKIFPANLSDRDEVKALGQKA   74 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCH-----HHHHHHHH--Hh---CCceEEEEccCCCHHHHHHHHHHH
Confidence            457999999999999999999999999998888876     22222111  11   1357889999999988877653  


Q ss_pred             -----CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCCc
Q 020104           82 -----GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                           ++|+|||+|+....      ...++ +..+++|+.++.++++++.+    .+ .+++|++||...+... +    
T Consensus        75 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~~~-~----  147 (245)
T PRK12936         75 EADLEGVDILVNNAGITKDGLFVRMSDEDW-DSVLEVNLTATFRLTRELTHPMMRRR-YGRIINITSVVGVTGN-P----  147 (245)
T ss_pred             HHHcCCCCEEEECCCCCCCCccccCCHHHH-HHHHhhccHHHHHHHHHHHHHHHHhC-CCEEEEECCHHhCcCC-C----
Confidence                 58999999986432      11223 37789999999888887653    34 5799999997554311 1    


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE  223 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  223 (331)
                                       ....|+.+|.+.+.+++.++.+   .+++++.++|+.+..+.... ..   ......... ..
T Consensus       148 -----------------~~~~Y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~-~~---~~~~~~~~~-~~  205 (245)
T PRK12936        148 -----------------GQANYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFIESAMTGK-LN---DKQKEAIMG-AI  205 (245)
T ss_pred             -----------------CCcchHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcCcCchhcc-cC---hHHHHHHhc-CC
Confidence                             1236999999888888777654   37999999999886553221 11   000111111 11


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCCCC---CceEEEecc
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYPDA---KGRYICSSH  261 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~~---~~~~~~~~~  261 (331)
                      ..     ..+...+|+++++.+++.....   +..+++.++
T Consensus       206 ~~-----~~~~~~~~ia~~~~~l~~~~~~~~~G~~~~~~~g  241 (245)
T PRK12936        206 PM-----KRMGTGAEVASAVAYLASSEAAYVTGQTIHVNGG  241 (245)
T ss_pred             CC-----CCCcCHHHHHHHHHHHcCccccCcCCCEEEECCC
Confidence            11     2567899999999988865432   345666554

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=99.83  E-value=2.3e-19  Score=151.72  Aligned_cols=210  Identities=17%  Similarity=0.154  Sum_probs=139.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      |+|+||||||+|+||+.+++.|+++|++|+++.++..    +..+.. ..+..   ...++..+.+|+.|.+++.++++ 
T Consensus         1 m~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~   73 (248)
T PRK06947          1 MRKVVLITGASRGIGRATAVLAAARGWSVGINYARDA----AAAEETADAVRA---AGGRACVVAGDVANEADVIAMFDA   73 (248)
T ss_pred             CCcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCH----HHHHHHHHHHHh---cCCcEEEEEeccCCHHHHHHHHHH
Confidence            3679999999999999999999999999987754331    111111 11111   12468899999999988877653 


Q ss_pred             ------CccEEEEecccCCCC-------CCChhhHHHHHHHHHHHHHHHHHHhc-C-----CccEEEEecccceeecCCC
Q 020104           82 ------GCTGVLHVATPVDFE-------DKEPEEVITQRAINGTLGILKSCLKS-G-----TVKRVVYTSSNAAVFYNDK  142 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~-------~~~~~~~~~~~n~~~~~~l~~~~~~~-~-----~~~~~v~~SS~~~~~~~~~  142 (331)
                            ++|+|||+|+.....       ..+. ...+++|+.++..+++++.+. .     .-.++|++||...+... .
T Consensus        74 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~-~  151 (248)
T PRK06947         74 VQSAFGRLDALVNNAGIVAPSMPLADMDAARL-RRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGS-P  151 (248)
T ss_pred             HHHhcCCCCEEEECCccCCCCCChhhCCHHHH-HHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCC-C
Confidence                  589999999864311       1112 356889999998887654432 1     01369999997654211 0


Q ss_pred             CCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHh
Q 020104          143 DVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALIL  219 (331)
Q Consensus       143 ~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~  219 (331)
                                          .....|+.+|.+.+.+++.++.+.   +++++++|||.+..+......  .. ...... 
T Consensus       152 --------------------~~~~~Y~~sK~~~~~~~~~la~~~~~~~i~v~~i~Pg~v~t~~~~~~~--~~-~~~~~~-  207 (248)
T PRK06947        152 --------------------NEYVDYAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIETEIHASGG--QP-GRAARL-  207 (248)
T ss_pred             --------------------CCCcccHhhHHHHHHHHHHHHHHhhhhCcEEEEEeccCcccccccccC--CH-HHHHHH-
Confidence                                012359999999999998887764   799999999999887432110  00 011111 


Q ss_pred             CCCcccccCCCccceeHHHHHHHHHHhhcCCC
Q 020104          220 GNREEYGFLLNTSMVHVDDVARAHIFLLEYPD  251 (331)
Q Consensus       220 ~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~  251 (331)
                      +......     ....++|+++.+++++.++.
T Consensus       208 ~~~~~~~-----~~~~~e~va~~~~~l~~~~~  234 (248)
T PRK06947        208 GAQTPLG-----RAGEADEVAETIVWLLSDAA  234 (248)
T ss_pred             hhcCCCC-----CCcCHHHHHHHHHHHcCccc
Confidence            1111111     35678999999999988654

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=99.83  E-value=5.5e-19  Score=149.97  Aligned_cols=217  Identities=13%  Similarity=0.076  Sum_probs=149.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|+|+||||+|+||++++++|+++|++|++++|+.     ...+.+ ..+..   ...++.++.+|+.|.+++.++++ 
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~-----~~~~~~~~~l~~---~~~~~~~~~~D~~~~~~i~~~~~~   81 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINA-----DAANHVVDEIQQ---LGGQAFACRCDITSEQELSALADF   81 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCH-----HHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHH
Confidence            368999999999999999999999999999998876     222221 11111   12357788999999988877653 


Q ss_pred             ------CccEEEEecccCCCCC-----CChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCCc
Q 020104           82 ------GCTGVLHVATPVDFED-----KEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~~-----~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                            ++|+|||+|+......     +++. ..+++|+.++.++++++..    .+ ..++|++||.....   +    
T Consensus        82 ~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~-~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~---~----  152 (255)
T PRK06113         82 ALSKLGKVDILVNNAGGGGPKPFDMPMADFR-RAYELNVFSFFHLSQLVAPEMEKNG-GGVILTITSMAAEN---K----  152 (255)
T ss_pred             HHHHcCCCCEEEECCCCCCCCCCCCCHHHHH-HHHHHhhhhHHHHHHHHHHHHHhcC-CcEEEEEecccccC---C----
Confidence                  5799999998643211     1222 5689999999999998863    33 45999999965431   0    


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE  223 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  223 (331)
                                     ..+...|+.+|.+.+.+++.++.+.   +++++++.||.+..+.......   ......... ..
T Consensus       153 ---------------~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~t~~~~~~~~---~~~~~~~~~-~~  213 (255)
T PRK06113        153 ---------------NINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVIT---PEIEQKMLQ-HT  213 (255)
T ss_pred             ---------------CCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecccccccccccccC---HHHHHHHHh-cC
Confidence                           1123479999999999999887653   7999999999987764322111   111111111 11


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      .+.     .+...+|+++++++++....   .+..+++.++
T Consensus       214 ~~~-----~~~~~~d~a~~~~~l~~~~~~~~~G~~i~~~gg  249 (255)
T PRK06113        214 PIR-----RLGQPQDIANAALFLCSPAASWVSGQILTVSGG  249 (255)
T ss_pred             CCC-----CCcCHHHHHHHHHHHcCccccCccCCEEEECCC
Confidence            121     56799999999999997543   2345566554

>PRK07478 short chain dehydrogenase; Provisional

Probab=99.83  E-value=8.2e-19  Score=148.85  Aligned_cols=212  Identities=17%  Similarity=0.147  Sum_probs=143.7

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHH
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      |..++++++||||+|.||.+++++|++.|++|++++|++     ...+.+ ..+..   ...++.++.+|+.|++++.++
T Consensus         2 ~~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~   73 (254)
T PRK07478          2 MRLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQ-----AELDQLVAEIRA---EGGEAVALAGDVRDEAYAKAL   73 (254)
T ss_pred             CCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHH
Confidence            334457899999999999999999999999999999987     222221 11111   124678899999999888777


Q ss_pred             hc-------CccEEEEecccCCC-C---CC--ChhhHHHHHHHHHHHHHHHH----HHhcCCccEEEEecccceeecCCC
Q 020104           80 IA-------GCTGVLHVATPVDF-E---DK--EPEEVITQRAINGTLGILKS----CLKSGTVKRVVYTSSNAAVFYNDK  142 (331)
Q Consensus        80 ~~-------~~d~Vih~a~~~~~-~---~~--~~~~~~~~~n~~~~~~l~~~----~~~~~~~~~~v~~SS~~~~~~~~~  142 (331)
                      ++       ++|++||+|+.... .   ..  +..+..+++|+.++..+.++    +++.+ ..++|++||...+..+  
T Consensus        74 ~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~-~~~iv~~sS~~~~~~~--  150 (254)
T PRK07478         74 VALAVERFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARG-GGSLIFTSTFVGHTAG--  150 (254)
T ss_pred             HHHHHHhcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEEechHhhccC--
Confidence            64       68999999986431 1   11  11237789999877766554    44454 5789999996544211  


Q ss_pred             CCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHh
Q 020104          143 DVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALIL  219 (331)
Q Consensus       143 ~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~  219 (331)
                                         .+....|+.+|.+.+.+++.++.+.   +++++.++||.+-.+..... ... ........
T Consensus       151 -------------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-~~~-~~~~~~~~  209 (254)
T PRK07478        151 -------------------FPGMAAYAASKAGLIGLTQVLAAEYGAQGIRVNALLPGGTDTPMGRAM-GDT-PEALAFVA  209 (254)
T ss_pred             -------------------CCCcchhHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCcccCcccccc-cCC-HHHHHHHH
Confidence                               1123479999999999999888764   69999999999976632110 000 01111111


Q ss_pred             CCCcccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          220 GNREEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       220 ~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      .. ...     ..+...+|+++++++++..+
T Consensus       210 ~~-~~~-----~~~~~~~~va~~~~~l~s~~  234 (254)
T PRK07478        210 GL-HAL-----KRMAQPEEIAQAALFLASDA  234 (254)
T ss_pred             hc-CCC-----CCCcCHHHHHHHHHHHcCch
Confidence            11 111     25678999999999998754

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=99.83  E-value=4.4e-19  Score=150.54  Aligned_cols=207  Identities=12%  Similarity=0.089  Sum_probs=145.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .++++|||||+|+||.+++++|+++|++|++++|+.     ...... ..+.   ....++..+.+|+.|.+++.++++ 
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~-----~~~~~~~~~l~---~~~~~~~~~~~Dl~~~~~~~~~~~~   79 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGAEIIINDITA-----ERAELAVAKLR---QEGIKAHAAPFNVTHKQEVEAAIEH   79 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCH-----HHHHHHHHHHH---hcCCeEEEEecCCCCHHHHHHHHHH
Confidence            457899999999999999999999999999999986     222111 1111   112357788999999988887764 


Q ss_pred             ------CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|+|||+|+....      ...++ +..+++|+.++..+++++..    .+ ..++|++||..... +     
T Consensus        80 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~-~-----  151 (254)
T PRK08085         80 IEKDIGPIDVLINNAGIQRRHPFTEFPEQEW-NDVIAVNQTAVFLVSQAVARYMVKRQ-AGKIINICSMQSEL-G-----  151 (254)
T ss_pred             HHHhcCCCCEEEECCCcCCCCChhhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEccchhcc-C-----
Confidence                  48999999986431      11223 36889999998888887764    33 46999999965431 1     


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                      .++...|+.+|.+.+.+++.++.+.   +++++.++||.+.++....... . ......... .
T Consensus       152 ----------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pG~~~t~~~~~~~~-~-~~~~~~~~~-~  212 (254)
T PRK08085        152 ----------------RDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVE-D-EAFTAWLCK-R  212 (254)
T ss_pred             ----------------CCCCcchHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCCCCCcchhhhcc-C-HHHHHHHHh-c
Confidence                            0123479999999999999987664   8999999999998875332111 0 111111111 1


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      ..+     ..+...+|++.++.+++...
T Consensus       213 ~p~-----~~~~~~~~va~~~~~l~~~~  235 (254)
T PRK08085        213 TPA-----ARWGDPQELIGAAVFLSSKA  235 (254)
T ss_pred             CCC-----CCCcCHHHHHHHHHHHhCcc
Confidence            122     26788999999999999753

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=99.83  E-value=3.7e-19  Score=151.32  Aligned_cols=217  Identities=16%  Similarity=0.208  Sum_probs=148.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+++||||||+|+||.+++++|++.|++|+++.|+.     ......+.+.+   ...++.++.+|+.+.+++.++++  
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~-----~~~~~~~~~~~---~~~~~~~~~~D~~~~~~i~~~~~~~   85 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGT-----NWDETRRLIEK---EGRKVTFVQVDLTKPESAEKVVKEA   85 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCc-----HHHHHHHHHHh---cCCceEEEEcCCCCHHHHHHHHHHH
Confidence            457899999999999999999999999999998874     11111111111   12468899999999988887765  


Q ss_pred             -----CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCc
Q 020104           82 -----GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                           ++|++||+|+.....      ..++ +..+++|+.++..+++++.    +.+ ..++|++||...+...      
T Consensus        86 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~------  157 (258)
T PRK06935         86 LEEFGKIDILVNNAGTIRRAPLLEYKDEDW-NAVMDINLNSVYHLSQAVAKVMAKQG-SGKIINIASMLSFQGG------  157 (258)
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccCCHHHH-HHHHHHhCHHHHHHHHHHHHHHHhcC-CeEEEEECCHHhccCC------
Confidence                 589999999864311      1123 3678899999877776654    444 5799999997765311      


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE  223 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  223 (331)
                                      +....|+.+|.+.+.+++.++.+.   +++++.++||.+..+....... . ......... ..
T Consensus       158 ----------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~-~-~~~~~~~~~-~~  218 (258)
T PRK06935        158 ----------------KFVPAYTASKHGVAGLTKAFANELAAYNIQVNAIAPGYIKTANTAPIRA-D-KNRNDEILK-RI  218 (258)
T ss_pred             ----------------CCchhhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeccccccchhhccc-C-hHHHHHHHh-cC
Confidence                            113379999999999999988764   7999999999998764321100 0 001111111 11


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEec
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSS  260 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~  260 (331)
                      ..     ..+...+|+++.+.+++....  ..| ++.+.+
T Consensus       219 ~~-----~~~~~~~dva~~~~~l~s~~~~~~~G~~i~~dg  253 (258)
T PRK06935        219 PA-----GRWGEPDDLMGAAVFLASRASDYVNGHILAVDG  253 (258)
T ss_pred             CC-----CCCCCHHHHHHHHHHHcChhhcCCCCCEEEECC
Confidence            11     267888999999999887543  233 445544

>PRK06398 aldose dehydrogenase; Validated

Probab=99.83  E-value=1e-18  Score=148.43  Aligned_cols=210  Identities=17%  Similarity=0.143  Sum_probs=145.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      ++|++|||||+|+||++++++|++.|++|++++|+..     ..             .++.++.+|+.|++++.++++  
T Consensus         5 ~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~-----~~-------------~~~~~~~~D~~~~~~i~~~~~~~   66 (258)
T PRK06398          5 KDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEP-----SY-------------NDVDYFKVDVSNKEQVIKGIDYV   66 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcc-----cc-------------CceEEEEccCCCHHHHHHHHHHH
Confidence            3578999999999999999999999999999999862     10             257889999999988877764  


Q ss_pred             -----CccEEEEecccCCCC---CCC--hhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCCcc
Q 020104           82 -----GCTGVLHVATPVDFE---DKE--PEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~---~~~--~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                           ++|+|||+|+.....   ..+  ..+..+++|+.++..+++++..    .+ ..++|++||...+..        
T Consensus        67 ~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~--------  137 (258)
T PRK06398         67 ISKYGRIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQD-KGVIINIASVQSFAV--------  137 (258)
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CeEEEEeCcchhccC--------
Confidence                 589999999864321   111  1236689999999888887753    34 579999999765521        


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc--CCcEEEeccCceeCCCCCCCC-------CccHHHHHHHH
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH--GLDLVTLIPSMVVGPFICPKF-------AGSVRSSLALI  218 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~-------~~~~~~~~~~~  218 (331)
                                    .++...|+.+|.+.+.+.+.++.+.  +++++.++||.+-.+-.....       +..........
T Consensus       138 --------------~~~~~~Y~~sKaal~~~~~~la~e~~~~i~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~  203 (258)
T PRK06398        138 --------------TRNAAAYVTSKHAVLGLTRSIAVDYAPTIRCVAVCPGSIRTPLLEWAAELEVGKDPEHVERKIREW  203 (258)
T ss_pred             --------------CCCCchhhhhHHHHHHHHHHHHHHhCCCCEEEEEecCCccchHHhhhhhccccCChhhhHHHHHhh
Confidence                          1224579999999999999988765  489999999988765321100       00000000000


Q ss_pred             hCCCcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEec
Q 020104          219 LGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSS  260 (331)
Q Consensus       219 ~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~  260 (331)
                       +.....     ..+...+|+++++++++....  ..| .+.+.+
T Consensus       204 -~~~~~~-----~~~~~p~eva~~~~~l~s~~~~~~~G~~i~~dg  242 (258)
T PRK06398        204 -GEMHPM-----KRVGKPEEVAYVVAFLASDLASFITGECVTVDG  242 (258)
T ss_pred             -hhcCCc-----CCCcCHHHHHHHHHHHcCcccCCCCCcEEEECC
Confidence             111111     256789999999999987543  234 444544

>PRK07856 short chain dehydrogenase; Provisional

Probab=99.83  E-value=1e-18  Score=148.04  Aligned_cols=214  Identities=16%  Similarity=0.119  Sum_probs=148.9

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |..++|++|||||+|+||++++++|++.|++|++++|+..     .  .     .   ...++.++.+|+.+.+++.+++
T Consensus         2 ~~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~-----~--~-----~---~~~~~~~~~~D~~~~~~~~~~~   66 (252)
T PRK07856          2 LDLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAP-----E--T-----V---DGRPAEFHAADVRDPDQVAALV   66 (252)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChh-----h--h-----h---cCCceEEEEccCCCHHHHHHHH
Confidence            4445689999999999999999999999999999999872     1  0     0   1146788999999998888776


Q ss_pred             c-------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCCCC
Q 020104           81 A-------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        81 ~-------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~  143 (331)
                      +       ++|+|||+|+.....      ..++ +..+++|+.++..+++++...    ....++|++||...+..    
T Consensus        67 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~----  141 (252)
T PRK07856         67 DAIVERHGRLDVLVNNAGGSPYALAAEASPRFH-EKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRRP----  141 (252)
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCCC----
Confidence            4       469999999854311      1122 378899999999999987642    11368999999765421    


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc--CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH--GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                                        .+....|+.+|...+.+++.++.++  .++++.++|+.+..+........ . ........ 
T Consensus       142 ------------------~~~~~~Y~~sK~a~~~l~~~la~e~~~~i~v~~i~Pg~v~t~~~~~~~~~-~-~~~~~~~~-  200 (252)
T PRK07856        142 ------------------SPGTAAYGAAKAGLLNLTRSLAVEWAPKVRVNAVVVGLVRTEQSELHYGD-A-EGIAAVAA-  200 (252)
T ss_pred             ------------------CCCCchhHHHHHHHHHHHHHHHHHhcCCeEEEEEEeccccChHHhhhccC-H-HHHHHHhh-
Confidence                              0123479999999999999988764  38999999999987642211100 0 00111111 


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCC--CCce-EEEec
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKGR-YICSS  260 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~  260 (331)
                      ....     ..+...+|+++++++++....  ..|. +.+.+
T Consensus       201 ~~~~-----~~~~~p~~va~~~~~L~~~~~~~i~G~~i~vdg  237 (252)
T PRK07856        201 TVPL-----GRLATPADIAWACLFLASDLASYVSGANLEVHG  237 (252)
T ss_pred             cCCC-----CCCcCHHHHHHHHHHHcCcccCCccCCEEEECC
Confidence            1111     256789999999999987542  3443 44544

>PRK12747 short chain dehydrogenase; Provisional

Probab=99.83  E-value=3.8e-19  Score=150.72  Aligned_cols=209  Identities=14%  Similarity=0.141  Sum_probs=139.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      +|+++||||+|+||.+++++|++.|++|++..++..    +..+. ...+..   ....+..+.+|+.+.+++..++.  
T Consensus         4 ~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~   76 (252)
T PRK12747          4 GKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRK----EEAEETVYEIQS---NGGSAFSIGANLESLHGVEALYSSL   76 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCH----HHHHHHHHHHHh---cCCceEEEecccCCHHHHHHHHHHH
Confidence            579999999999999999999999999988754321    11111 111111   12356778899999876654331  


Q ss_pred             -----------CccEEEEecccCCCC---CCC--hhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCCC
Q 020104           82 -----------GCTGVLHVATPVDFE---DKE--PEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 -----------~~d~Vih~a~~~~~~---~~~--~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~  144 (331)
                                 ++|++||+||.....   ..+  ..+..+++|+.++..+++++...- ...++|++||...+...    
T Consensus        77 ~~~~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~----  152 (252)
T PRK12747         77 DNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISL----  152 (252)
T ss_pred             HHHhhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCcccccCC----
Confidence                       589999999854321   111  123677899999999998876541 13599999997654210    


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                                        +....|+.+|.+.+.+++.++.+.   +++++.+.||.+.++.........  . .......
T Consensus       153 ------------------~~~~~Y~~sKaa~~~~~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~--~-~~~~~~~  211 (252)
T PRK12747        153 ------------------PDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFIKTDMNAELLSDP--M-MKQYATT  211 (252)
T ss_pred             ------------------CCchhHHHHHHHHHHHHHHHHHHHhHcCCEEEEEecCCccCchhhhcccCH--H-HHHHHHh
Confidence                              123479999999999999887654   899999999999887432111110  0 0111111


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      ....     ..+.+.+|+++++.+++...
T Consensus       212 ~~~~-----~~~~~~~dva~~~~~l~s~~  235 (252)
T PRK12747        212 ISAF-----NRLGEVEDIADTAAFLASPD  235 (252)
T ss_pred             cCcc-----cCCCCHHHHHHHHHHHcCcc
Confidence            1111     26789999999999998754

>PRK07035 short chain dehydrogenase; Provisional

Probab=99.83  E-value=7e-19  Score=149.08  Aligned_cols=220  Identities=17%  Similarity=0.171  Sum_probs=147.8

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      .++++|+||||+|+||.+++++|++.|++|++++|+.     ...+.+ +.+.+   ....+.++.+|+.+.+++.++++
T Consensus         6 l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~   77 (252)
T PRK07035          6 LTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKL-----DGCQAVADAIVA---AGGKAEALACHIGEMEQIDALFA   77 (252)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHh---cCCeEEEEEcCCCCHHHHHHHHH
Confidence            3457899999999999999999999999999999976     222211 11111   12357788999999988876654


Q ss_pred             -------CccEEEEecccCCC----CCC--ChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCC
Q 020104           82 -------GCTGVLHVATPVDF----EDK--EPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 -------~~d~Vih~a~~~~~----~~~--~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                             ++|+|||+|+....    ...  +..+..+++|+.++..+++++.    +.+ ..++|++||......     
T Consensus        78 ~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~~-----  151 (252)
T PRK07035         78 HIRERHGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQG-GGSIVNVASVNGVSP-----  151 (252)
T ss_pred             HHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CcEEEEECchhhcCC-----
Confidence                   58999999985321    111  1123678899999888877663    344 579999999654320     


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                                       .++...|+.+|.+.+.+++.++.+.   +++++.+.||.+..+........ . .........
T Consensus       152 -----------------~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~i~PG~v~t~~~~~~~~~-~-~~~~~~~~~  212 (252)
T PRK07035        152 -----------------GDFQGIYSITKAAVISMTKAFAKECAPFGIRVNALLPGLTDTKFASALFKN-D-AILKQALAH  212 (252)
T ss_pred             -----------------CCCCcchHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeccccCcccccccCC-H-HHHHHHHcc
Confidence                             1224479999999999999988654   79999999999876532211111 0 111111111


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCCC--Cc-eEEEecc
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPDA--KG-RYICSSH  261 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~--~~-~~~~~~~  261 (331)
                       ..+     ..+...+|+++++++++.+...  .| .+.+.++
T Consensus       213 -~~~-----~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~dgg  249 (252)
T PRK07035        213 -IPL-----RRHAEPSEMAGAVLYLASDASSYTTGECLNVDGG  249 (252)
T ss_pred             -CCC-----CCcCCHHHHHHHHHHHhCccccCccCCEEEeCCC
Confidence             111     2567899999999999976532  33 4456554

>PRK08265 short chain dehydrogenase; Provisional

Probab=99.83  E-value=8.5e-19  Score=149.30  Aligned_cols=222  Identities=16%  Similarity=0.138  Sum_probs=148.4

Q ss_pred             CCC-CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH
Q 020104            1 MEE-GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         1 M~~-~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      |.. .+++++||||+|.||++++++|+++|++|++++|+.     +..+.+..  +.   ..++.++.+|+.|.+++.++
T Consensus         1 m~~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~~--~~---~~~~~~~~~Dl~~~~~~~~~   70 (261)
T PRK08265          1 MIGLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDA-----DNGAAVAA--SL---GERARFIATDITDDAAIERA   70 (261)
T ss_pred             CCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHH--Hh---CCeeEEEEecCCCHHHHHHH
Confidence            542 357899999999999999999999999999999987     22222211  11   14678899999999888777


Q ss_pred             hc-------CccEEEEecccCCC-----CCCChhhHHHHHHHHHHHHHHHHHHhc--CCccEEEEecccceeecCCCCCC
Q 020104           80 IA-------GCTGVLHVATPVDF-----EDKEPEEVITQRAINGTLGILKSCLKS--GTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        80 ~~-------~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                      ++       .+|++||+|+....     ..+++ +..+++|+.++..+++++...  ....++|++||.......     
T Consensus        71 ~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~-~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~-----  144 (261)
T PRK08265         71 VATVVARFGRVDILVNLACTYLDDGLASSRADW-LAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKFAQ-----  144 (261)
T ss_pred             HHHHHHHhCCCCEEEECCCCCCCCcCcCCHHHH-HHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhccCC-----
Confidence            64       57999999986431     11123 377889999998888876542  113689999997654211     


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                       +....|+.+|...+.+.+.++.+.   +++++.++||.+..+............ ........
T Consensus       145 -----------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~~~t~~~~~~~~~~~~~-~~~~~~~~  206 (261)
T PRK08265        145 -----------------TGRWLYPASKAAIRQLTRSMAMDLAPDGIRVNSVSPGWTWSRVMDELSGGDRAK-ADRVAAPF  206 (261)
T ss_pred             -----------------CCCchhHHHHHHHHHHHHHHHHHhcccCEEEEEEccCCccChhhhhhcccchhH-HHHhhccc
Confidence                             113469999999999999887664   799999999988766321100000000 00000000


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                      ..+     ..+...+|+|+++.+++....  ..| .+.+.+.
T Consensus       207 ~p~-----~r~~~p~dva~~~~~l~s~~~~~~tG~~i~vdgg  243 (261)
T PRK08265        207 HLL-----GRVGDPEEVAQVVAFLCSDAASFVTGADYAVDGG  243 (261)
T ss_pred             CCC-----CCccCHHHHHHHHHHHcCccccCccCcEEEECCC
Confidence            111     246788999999999997543  233 4455443

>PRK06101 short chain dehydrogenase; Provisional

Probab=99.83  E-value=2.6e-19  Score=150.54  Aligned_cols=192  Identities=19%  Similarity=0.204  Sum_probs=141.0

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG--   82 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--   82 (331)
                      |++++||||+|+||+++++.|+++|++|++++|++     +.   ++.+.+.   ..++.++.+|+.|.+++.+++++  
T Consensus         1 ~~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~-----~~---~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~   69 (240)
T PRK06101          1 MTAVLITGATSGIGKQLALDYAKQGWQVIACGRNQ-----SV---LDELHTQ---SANIFTLAFDVTDHPGTKAALSQLP   69 (240)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCH-----HH---HHHHHHh---cCCCeEEEeeCCCHHHHHHHHHhcc
Confidence            36899999999999999999999999999999986     22   2222111   13578899999999999988864  


Q ss_pred             --ccEEEEecccCCCCC---CCh--hhHHHHHHHHHHHHHHHHHHhc--CCccEEEEecccceeecCCCCCCcccCCCCC
Q 020104           83 --CTGVLHVATPVDFED---KEP--EEVITQRAINGTLGILKSCLKS--GTVKRVVYTSSNAAVFYNDKDVDMMDETFWS  153 (331)
Q Consensus        83 --~d~Vih~a~~~~~~~---~~~--~~~~~~~n~~~~~~l~~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~  153 (331)
                        +|.+||+|+......   .++  .+..+++|+.++.++++++...  . ..++|++||..... +             
T Consensus        70 ~~~d~~i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~iv~isS~~~~~-~-------------  134 (240)
T PRK06101         70 FIPELWIFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSC-GHRVVIVGSIASEL-A-------------  134 (240)
T ss_pred             cCCCEEEEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCeEEEEechhhcc-C-------------
Confidence              689999997543111   121  1368999999999999998863  2 35899999854331 0             


Q ss_pred             ChhhhhhcCCCCchhHhhHHHHHHHHHHHHH---HcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCC
Q 020104          154 DVDYIRKLDSWGKSYAISKTLTERAALEFAE---EHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLN  230 (331)
Q Consensus       154 ~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~---~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (331)
                              .+....|+.+|...+.+.+.++.   .++++++++|||.++++.....               ....     
T Consensus       135 --------~~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~pg~i~t~~~~~~---------------~~~~-----  186 (240)
T PRK06101        135 --------LPRAEAYGASKAAVAYFARTLQLDLRPKGIEVVTVFPGFVATPLTDKN---------------TFAM-----  186 (240)
T ss_pred             --------CCCCchhhHHHHHHHHHHHHHHHHHHhcCceEEEEeCCcCCCCCcCCC---------------CCCC-----
Confidence                    01134699999999999988774   3589999999999998742210               0000     


Q ss_pred             ccceeHHHHHHHHHHhhcCC
Q 020104          231 TSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       231 ~~~i~v~D~a~~~~~~~~~~  250 (331)
                      ...+..+|+++.++..++..
T Consensus       187 ~~~~~~~~~a~~i~~~i~~~  206 (240)
T PRK06101        187 PMIITVEQASQEIRAQLARG  206 (240)
T ss_pred             CcccCHHHHHHHHHHHHhcC
Confidence            12468999999999999875

>PRK08643 acetoin reductase; Validated

Probab=99.83  E-value=4.7e-19  Score=150.50  Aligned_cols=221  Identities=17%  Similarity=0.179  Sum_probs=145.6

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      +|++|||||+|+||.+++++|+++|++|++++|+.     .....+..  ++.....++.++.+|+.|++++.++++   
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~-----~~~~~~~~--~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~   74 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNE-----ETAQAAAD--KLSKDGGKAIAVKADVSDRDQVFAAVRQVV   74 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHH--HHHhcCCeEEEEECCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999999999999986     22222211  111112467889999999988877664   


Q ss_pred             ----CccEEEEecccCCCCC---C--ChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCCCCCCccc
Q 020104           82 ----GCTGVLHVATPVDFED---K--EPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        82 ----~~d~Vih~a~~~~~~~---~--~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                          ++|+|||+|+......   .  +..+..+++|+.++..+++++...    +...++|++||...+. +.       
T Consensus        75 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~-~~-------  146 (256)
T PRK08643         75 DTFGDLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVV-GN-------  146 (256)
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECcccccc-CC-------
Confidence                5899999998643211   1  112367889999988777766532    2135899999976542 11       


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCC-------ccHHHHHHHH
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFA-------GSVRSSLALI  218 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~-------~~~~~~~~~~  218 (331)
                                    +..+.|+.+|.+.+.+++.++.+   .+++++.++|+.+.++.......       ..........
T Consensus       147 --------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~  212 (256)
T PRK08643        147 --------------PELAVYSSTKFAVRGLTQTAARDLASEGITVNAYAPGIVKTPMMFDIAHQVGENAGKPDEWGMEQF  212 (256)
T ss_pred             --------------CCCchhHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcChhhhHHHhhhccccCCCchHHHHHH
Confidence                          11346999999999988888765   47999999999998764211000       0000000000


Q ss_pred             hCCCcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEec
Q 020104          219 LGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSS  260 (331)
Q Consensus       219 ~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~  260 (331)
                      ... ...     ..+...+|+++++.+++....  ..| .+.+.+
T Consensus       213 ~~~-~~~-----~~~~~~~~va~~~~~L~~~~~~~~~G~~i~vdg  251 (256)
T PRK08643        213 AKD-ITL-----GRLSEPEDVANCVSFLAGPDSDYITGQTIIVDG  251 (256)
T ss_pred             hcc-CCC-----CCCcCHHHHHHHHHHHhCccccCccCcEEEeCC
Confidence            110 111     256789999999999997543  344 344544

>PRK07814 short chain dehydrogenase; Provisional

Probab=99.83  E-value=6e-19  Score=150.41  Aligned_cols=207  Identities=15%  Similarity=0.143  Sum_probs=144.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .++++|||||+|+||.+++++|+++|++|++++|+.     +..+.+ ..+..   ...++.++.+|+.+.+++.++++ 
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~-----~~~~~~~~~l~~---~~~~~~~~~~D~~~~~~~~~~~~~   80 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTE-----SQLDEVAEQIRA---AGRRAHVVAADLAHPEATAGLAGQ   80 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHH
Confidence            357899999999999999999999999999999986     222211 11111   12468889999999988877664 


Q ss_pred             ------CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHh-----cCCccEEEEecccceeecCCCCC
Q 020104           82 ------GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLK-----SGTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~-----~~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                            ++|+|||+|+....      ..+++ ...+++|+.++.++++++..     .+ ..++|++||......     
T Consensus        81 ~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~~~-~g~iv~~sS~~~~~~-----  153 (263)
T PRK07814         81 AVEAFGRLDIVVNNVGGTMPNPLLSTSTKDL-ADAFTFNVATAHALTVAAVPLMLEHSG-GGSVINISSTMGRLA-----  153 (263)
T ss_pred             HHHHcCCCCEEEECCCCCCCCChhhCCHHHH-HHHHHhhcHHHHHHHHHHHHHHHhhcC-CeEEEEEccccccCC-----
Confidence                  68999999985331      11223 37889999999999999874     33 578999999643310     


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc--CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH--GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                       .++.+.|+.+|.+.+.+++.++.+.  +++++.++|+.+..+.... .... ........+. 
T Consensus       154 -----------------~~~~~~Y~~sK~a~~~~~~~~~~e~~~~i~v~~i~Pg~v~t~~~~~-~~~~-~~~~~~~~~~-  213 (263)
T PRK07814        154 -----------------GRGFAAYGTAKAALAHYTRLAALDLCPRIRVNAIAPGSILTSALEV-VAAN-DELRAPMEKA-  213 (263)
T ss_pred             -----------------CCCCchhHHHHHHHHHHHHHHHHHHCCCceEEEEEeCCCcCchhhh-ccCC-HHHHHHHHhc-
Confidence                             1224579999999999999888764  5789999999887653211 0000 1111111111 


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      ...     ..+...+|+++++++++...
T Consensus       214 ~~~-----~~~~~~~~va~~~~~l~~~~  236 (263)
T PRK07814        214 TPL-----RRLGDPEDIAAAAVYLASPA  236 (263)
T ss_pred             CCC-----CCCcCHHHHHHHHHHHcCcc
Confidence            111     14578899999999998753

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.83  E-value=2.3e-19  Score=152.09  Aligned_cols=218  Identities=13%  Similarity=0.146  Sum_probs=148.0

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHH
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      |....++++||||+|+||.++++.|+++|++|++++|+.     ...... ..+..   ...++.++.+|+.+.+++.++
T Consensus         1 ~~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~   72 (253)
T PRK08217          1 MDLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ-----EKLEEAVAECGA---LGTEVRGYAANVTDEEDVEAT   72 (253)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHh---cCCceEEEEcCCCCHHHHHHH
Confidence            555567999999999999999999999999999999886     221111 11111   124678899999998877766


Q ss_pred             hc-------CccEEEEecccCCCC---------------CCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecc
Q 020104           80 IA-------GCTGVLHVATPVDFE---------------DKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSS  133 (331)
Q Consensus        80 ~~-------~~d~Vih~a~~~~~~---------------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS  133 (331)
                      ++       ++|+|||+|+.....               ..+. ...+++|+.++..+.+.+.    +...-.++|++||
T Consensus        73 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss  151 (253)
T PRK08217         73 FAQIAEDFGQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQF-QSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISS  151 (253)
T ss_pred             HHHHHHHcCCCCEEEECCCccCcCcccccccccccccCCHHHH-HHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEcc
Confidence            54       479999999853311               1112 3577899999887765443    2221357999998


Q ss_pred             cceeecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCcc
Q 020104          134 NAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGS  210 (331)
Q Consensus       134 ~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~  210 (331)
                      ...++.                       ++...|+.+|.+.+.+++.++.+   .+++++.++|+.+.++......   
T Consensus       152 ~~~~~~-----------------------~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~pg~v~t~~~~~~~---  205 (253)
T PRK08217        152 IARAGN-----------------------MGQTNYSASKAGVAAMTVTWAKELARYGIRVAAIAPGVIETEMTAAMK---  205 (253)
T ss_pred             ccccCC-----------------------CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccccC---
Confidence            765421                       12347999999999999988765   4899999999999887533211   


Q ss_pred             HHHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCCCC-ceEEEec
Q 020104          211 VRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDAK-GRYICSS  260 (331)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~-~~~~~~~  260 (331)
                       ......... ....     ..+.+.+|+++++..++...... .++++++
T Consensus       206 -~~~~~~~~~-~~~~-----~~~~~~~~~a~~~~~l~~~~~~~g~~~~~~g  249 (253)
T PRK08217        206 -PEALERLEK-MIPV-----GRLGEPEEIAHTVRFIIENDYVTGRVLEIDG  249 (253)
T ss_pred             -HHHHHHHHh-cCCc-----CCCcCHHHHHHHHHHHHcCCCcCCcEEEeCC
Confidence             111111111 1111     25679999999999999765434 4666655

>PRK12744 short chain dehydrogenase; Provisional

Probab=99.83  E-value=3.7e-19  Score=151.21  Aligned_cols=227  Identities=14%  Similarity=0.147  Sum_probs=145.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccc-cCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFL-KNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      ++|++|||||+|+||.++++.|+++|++|+++.++..    ...+..+.+ .++.....++.++.+|+.+++++.++++ 
T Consensus         7 ~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (257)
T PRK12744          7 KGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSA----ASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDD   82 (257)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCc----cchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHH
Confidence            3478999999999999999999999999877776542    111111111 1111112468889999999998887764 


Q ss_pred             ------CccEEEEecccCC------CCCCChhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCCCCccc
Q 020104           82 ------GCTGVLHVATPVD------FEDKEPEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        82 ------~~d~Vih~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                            ++|++||+|+...      ....++ +..+++|+.++..+++++...- ...++++++|+......        
T Consensus        83 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~-~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~~--------  153 (257)
T PRK12744         83 AKAAFGRPDIAINTVGKVLKKPIVEISEAEY-DEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAFT--------  153 (257)
T ss_pred             HHHhhCCCCEEEECCcccCCCCcccCCHHHH-HHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhcccC--------
Confidence                  5899999998632      111123 3688899999999999887541 12467766433322101        


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCccc
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEY  225 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  225 (331)
                                    +....|+.+|.+.|.+++.++.+.   +++++.++||.+.++...+....  .. .. ........
T Consensus       154 --------------~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~t~~~~~~~~~--~~-~~-~~~~~~~~  215 (257)
T PRK12744        154 --------------PFYSAYAGSKAPVEHFTRAASKEFGARGISVTAVGPGPMDTPFFYPQEGA--EA-VA-YHKTAAAL  215 (257)
T ss_pred             --------------CCcccchhhHHHHHHHHHHHHHHhCcCceEEEEEecCccccchhcccccc--ch-hh-cccccccc
Confidence                          113469999999999999998775   69999999999987643221100  00 00 00000000


Q ss_pred             ccCCCccceeHHHHHHHHHHhhcCCC--CCceEEEecc
Q 020104          226 GFLLNTSMVHVDDVARAHIFLLEYPD--AKGRYICSSH  261 (331)
Q Consensus       226 ~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~~~~  261 (331)
                      .......+.+.+|++.++.+++....  .+..+++.++
T Consensus       216 ~~~~~~~~~~~~dva~~~~~l~~~~~~~~g~~~~~~gg  253 (257)
T PRK12744        216 SPFSKTGLTDIEDIVPFIRFLVTDGWWITGQTILINGG  253 (257)
T ss_pred             cccccCCCCCHHHHHHHHHHhhcccceeecceEeecCC
Confidence            01111258899999999999998532  2445666543

>PRK08017 oxidoreductase; Provisional

Probab=99.83  E-value=2.4e-19  Score=152.36  Aligned_cols=203  Identities=19%  Similarity=0.178  Sum_probs=137.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      +++|+||||+|+||+++++.|+++|++|+++.|+.     +..+.   +.+     .++..+.+|+.|.+++.++++   
T Consensus         2 ~k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~-----~~~~~---~~~-----~~~~~~~~D~~~~~~~~~~~~~i~   68 (256)
T PRK08017          2 QKSVLITGCSSGIGLEAALELKRRGYRVLAACRKP-----DDVAR---MNS-----LGFTGILLDLDDPESVERAADEVI   68 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH-----HHhHH---HHh-----CCCeEEEeecCCHHHHHHHHHHHH
Confidence            36899999999999999999999999999999987     22222   111     246788999999887665542   


Q ss_pred             -----CccEEEEecccCCCCC-----CChhhHHHHHHHHHHHHH----HHHHHhcCCccEEEEecccceeecCCCCCCcc
Q 020104           82 -----GCTGVLHVATPVDFED-----KEPEEVITQRAINGTLGI----LKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~~-----~~~~~~~~~~n~~~~~~l----~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                           ++|.+||+|+......     .+..+..+++|+.++.++    ++.+++.+ .+++|++||...+.  .      
T Consensus        69 ~~~~~~~~~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~~~iv~~ss~~~~~--~------  139 (256)
T PRK08017         69 ALTDNRLYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHG-EGRIVMTSSVMGLI--S------  139 (256)
T ss_pred             HhcCCCCeEEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC-CCEEEEEcCccccc--C------
Confidence                 4689999998543211     111236889999888775    56666666 68999999964331  1      


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHH---HcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcc
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAE---EHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREE  224 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~---~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~  224 (331)
                                    .+..+.|+.+|...|.+.+.++.   ..+++++++|||.+..+....     .   .. .......
T Consensus       140 --------------~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~-----~---~~-~~~~~~~  196 (256)
T PRK08017        140 --------------TPGRGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTDN-----V---NQ-TQSDKPV  196 (256)
T ss_pred             --------------CCCccHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCcccchhhc-----c---cc-hhhccch
Confidence                          01244799999999998776533   358999999998776542111     0   00 0000011


Q ss_pred             cccCC-CccceeHHHHHHHHHHhhcCCCC
Q 020104          225 YGFLL-NTSMVHVDDVARAHIFLLEYPDA  252 (331)
Q Consensus       225 ~~~~~-~~~~i~v~D~a~~~~~~~~~~~~  252 (331)
                      ..... .+.+++++|+++++..+++++..
T Consensus       197 ~~~~~~~~~~~~~~d~a~~~~~~~~~~~~  225 (256)
T PRK08017        197 ENPGIAARFTLGPEAVVPKLRHALESPKP  225 (256)
T ss_pred             hhhHHHhhcCCCHHHHHHHHHHHHhCCCC
Confidence            11111 14679999999999999987654

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=99.83  E-value=8.7e-19  Score=148.87  Aligned_cols=217  Identities=15%  Similarity=0.125  Sum_probs=149.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|+|+||||+|+||++++++|+++|++|++++|+.     +....+ ..+.+   ...++.++.+|+.|.+++.++++ 
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~   81 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNA-----ATLEAAVAALRA---AGGAAEALAFDIADEEAVAAAFAR   81 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCH-----HHHHHHHHHHHh---cCCceEEEEccCCCHHHHHHHHHH
Confidence            468999999999999999999999999999999986     221111 11111   12457899999999988877764 


Q ss_pred             ------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|+|||+++.....      ..++ +..+++|+.++.++.+++.+    .+ .+++|++||.......     
T Consensus        82 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~~ss~~~~~~~-----  154 (256)
T PRK06124         82 IDAEHGRLDILVNNVGARDRRPLAELDDAAI-RALLETDLVAPILLSRLAAQRMKRQG-YGRIIAITSIAGQVAR-----  154 (256)
T ss_pred             HHHhcCCCCEEEECCCCCCCCChhhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEeechhccCC-----
Confidence                  469999999864321      1122 36788999999888866653    45 6799999997644211     


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                       +....|+.+|.+.+.+++.++.+.   +++++.++|+.+.++........  ......... .
T Consensus       155 -----------------~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~--~~~~~~~~~-~  214 (256)
T PRK06124        155 -----------------AGDAVYPAAKQGLTGLMRALAAEFGPHGITSNAIAPGYFATETNAAMAAD--PAVGPWLAQ-R  214 (256)
T ss_pred             -----------------CCccHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEECCccCcchhhhccC--hHHHHHHHh-c
Confidence                             113479999999999988877653   79999999999998853221110  111111111 1


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCCC--CceE-EEec
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPDA--KGRY-ICSS  260 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~--~~~~-~~~~  260 (331)
                      ...     ..+++.+|+++++++++..+..  .|.+ .+.+
T Consensus       215 ~~~-----~~~~~~~~~a~~~~~l~~~~~~~~~G~~i~~dg  250 (256)
T PRK06124        215 TPL-----GRWGRPEEIAGAAVFLASPAASYVNGHVLAVDG  250 (256)
T ss_pred             CCC-----CCCCCHHHHHHHHHHHcCcccCCcCCCEEEECC
Confidence            112     2688999999999999986532  3544 3443

>PRK07063 short chain dehydrogenase; Provisional

Probab=99.83  E-value=5.2e-19  Score=150.62  Aligned_cols=220  Identities=15%  Similarity=0.088  Sum_probs=147.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      +|+++||||+|+||.++++.|+++|++|++++|+.     +..+.. ..+... ....++.++.+|+.|.+++.++++  
T Consensus         7 ~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~-----~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~   80 (260)
T PRK07063          7 GKVALVTGAAQGIGAAIARAFAREGAAVALADLDA-----ALAERAAAAIARD-VAGARVLAVPADVTDAASVAAAVAAA   80 (260)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHhc-cCCceEEEEEccCCCHHHHHHHHHHH
Confidence            47899999999999999999999999999999976     222221 111110 012467889999999988887765  


Q ss_pred             -----CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCCc
Q 020104           82 -----GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                           ++|++||+|+....      ...++ +..+++|+.++..+++++..    .+ ..++|++||...+..       
T Consensus        81 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~-------  151 (260)
T PRK07063         81 EEAFGPLDVLVNNAGINVFADPLAMTDEDW-RRCFAVDLDGAWNGCRAVLPGMVERG-RGSIVNIASTHAFKI-------  151 (260)
T ss_pred             HHHhCCCcEEEECCCcCCCCChhhCCHHHH-HHHHHhhhHHHHHHHHHHHHHHHhhC-CeEEEEECChhhccC-------
Confidence                 58999999986432      11223 36788999999888887653    34 469999999754421       


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCC--ccHHHHHHHHhCC
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFA--GSVRSSLALILGN  221 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~--~~~~~~~~~~~~~  221 (331)
                                     .++..+|+.+|.+.+.+++.++.+.   +++++.++||.+-.+.......  ........... .
T Consensus       152 ---------------~~~~~~Y~~sKaa~~~~~~~la~el~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~-~  215 (260)
T PRK07063        152 ---------------IPGCFPYPVAKHGLLGLTRALGIEYAARNVRVNAIAPGYIETQLTEDWWNAQPDPAAARAETL-A  215 (260)
T ss_pred             ---------------CCCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccChhhhhhhhccCChHHHHHHHH-h
Confidence                           0123479999999999999988765   7999999999987653211000  00000011111 1


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCC--CCce-EEEec
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKGR-YICSS  260 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~  260 (331)
                      ...+     ..+...+|++.++++++....  ..|. ..+.+
T Consensus       216 ~~~~-----~r~~~~~~va~~~~fl~s~~~~~itG~~i~vdg  252 (260)
T PRK07063        216 LQPM-----KRIGRPEEVAMTAVFLASDEAPFINATCITIDG  252 (260)
T ss_pred             cCCC-----CCCCCHHHHHHHHHHHcCccccccCCcEEEECC
Confidence            1111     156789999999999987543  3443 34543

>PRK08324 short chain dehydrogenase; Validated

Probab=99.82  E-value=2.5e-19  Score=171.43  Aligned_cols=222  Identities=21%  Similarity=0.174  Sum_probs=151.6

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      +++||||||+|+||+++++.|++.|++|++++|+.     ........  .+... .++..+.+|+.|.+++.++++   
T Consensus       422 gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~-----~~~~~~~~--~l~~~-~~v~~v~~Dvtd~~~v~~~~~~~~  493 (681)
T PRK08324        422 GKVALVTGAAGGIGKATAKRLAAEGACVVLADLDE-----EAAEAAAA--ELGGP-DRALGVACDVTDEAAVQAAFEEAA  493 (681)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCH-----HHHHHHHH--HHhcc-CcEEEEEecCCCHHHHHHHHHHHH
Confidence            47899999999999999999999999999999987     22221111  11111 368899999999988877764   


Q ss_pred             ----CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHH----hcCCc-cEEEEecccceeecCCCCCCc
Q 020104           82 ----GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCL----KSGTV-KRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 ----~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~-~~~v~~SS~~~~~~~~~~~~~  146 (331)
                          ++|+|||+||.....      ..++ +..+++|+.++..+++++.    +.+ . .+||++||...+...      
T Consensus       494 ~~~g~iDvvI~~AG~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~l~~~~-~~g~iV~vsS~~~~~~~------  565 (681)
T PRK08324        494 LAFGGVDIVVSNAGIAISGPIEETSDEDW-RRSFDVNATGHFLVAREAVRIMKAQG-LGGSIVFIASKNAVNPG------  565 (681)
T ss_pred             HHcCCCCEEEECCCCCCCCChhhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhcC-CCcEEEEECCccccCCC------
Confidence                689999999854421      1123 3678899999999977664    333 3 699999997665311      


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCcee-CCCCCCCCCccHHHHHHHHhCCC
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVV-GPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~-G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                      +....|+.+|...+.+++.++.+.   ++++++++|+.+| +.+.....  ... ......+..
T Consensus       566 ----------------~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~Pg~v~~~t~~~~~~--~~~-~~~~~~g~~  626 (681)
T PRK08324        566 ----------------PNFGAYGAAKAAELHLVRQLALELGPDGIRVNGVNPDAVVRGSGIWTGE--WIE-ARAAAYGLS  626 (681)
T ss_pred             ----------------CCcHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCceeecCCccccch--hhh-hhhhhccCC
Confidence                            124579999999999999988765   5999999999998 55432211  000 000001111


Q ss_pred             -c----ccccCCC-ccceeHHHHHHHHHHhhc--CCC-CCceEEEecc
Q 020104          223 -E----EYGFLLN-TSMVHVDDVARAHIFLLE--YPD-AKGRYICSSH  261 (331)
Q Consensus       223 -~----~~~~~~~-~~~i~v~D~a~~~~~~~~--~~~-~~~~~~~~~~  261 (331)
                       .    .+..... +.+++++|+|+++++++.  ... .+.+++++++
T Consensus       627 ~~~~~~~~~~~~~l~~~v~~~DvA~a~~~l~s~~~~~~tG~~i~vdgG  674 (681)
T PRK08324        627 EEELEEFYRARNLLKREVTPEDVAEAVVFLASGLLSKTTGAIITVDGG  674 (681)
T ss_pred             hHHHHHHHHhcCCcCCccCHHHHHHHHHHHhCccccCCcCCEEEECCC
Confidence             0    1111111 479999999999999884  233 3446777543

>PRK05693 short chain dehydrogenase; Provisional

Probab=99.82  E-value=1.6e-18  Score=148.72  Aligned_cols=213  Identities=14%  Similarity=0.116  Sum_probs=142.8

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      ||++|||||+|+||+++++.|+++|++|++++|+.     ....   .+..     .++.++.+|+.|.+++.++++   
T Consensus         1 mk~vlItGasggiG~~la~~l~~~G~~V~~~~r~~-----~~~~---~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~   67 (274)
T PRK05693          1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARKA-----EDVE---ALAA-----AGFTAVQLDVNDGAALARLAEELE   67 (274)
T ss_pred             CCEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCH-----HHHH---HHHH-----CCCeEEEeeCCCHHHHHHHHHHHH
Confidence            36899999999999999999999999999999987     2221   1111     246788999999988877653   


Q ss_pred             ----CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHh---cCCccEEEEecccceeecCCCCCCccc
Q 020104           82 ----GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLK---SGTVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        82 ----~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~---~~~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                          ++|+|||+||.....      .++. +..+++|+.++.++++++..   .+ ..++|++||...+...        
T Consensus        68 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~~~-~g~iv~isS~~~~~~~--------  137 (274)
T PRK05693         68 AEHGGLDVLINNAGYGAMGPLLDGGVEAM-RRQFETNVFAVVGVTRALFPLLRRS-RGLVVNIGSVSGVLVT--------  137 (274)
T ss_pred             HhcCCCCEEEECCCCCCCCCcccCCHHHH-HHHHHHHhHHHHHHHHHHHHHHhhc-CCEEEEECCccccCCC--------
Confidence                589999999864321      1122 36788999999888888743   23 3689999996544210        


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCC----------CccHHHHH
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKF----------AGSVRSSL  215 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~----------~~~~~~~~  215 (331)
                                    +....|+.+|.+.+.+++.++.+   +++++++++||.+.++-.....          ..+... .
T Consensus       138 --------------~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~-~  202 (274)
T PRK05693        138 --------------PFAGAYCASKAAVHALSDALRLELAPFGVQVMEVQPGAIASQFASNASREAEQLLAEQSPWWPL-R  202 (274)
T ss_pred             --------------CCccHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccccccccccccchhhcCCCCCccHHH-H
Confidence                          11347999999999988877654   5899999999999776322100          000000 0


Q ss_pred             HHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCCCCceEEEe
Q 020104          216 ALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDAKGRYICS  259 (331)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~  259 (331)
                      .........    ........+|+|+.++.++.++.....+..+
T Consensus       203 ~~~~~~~~~----~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~g  242 (274)
T PRK05693        203 EHIQARARA----SQDNPTPAAEFARQLLAAVQQSPRPRLVRLG  242 (274)
T ss_pred             HHHHHHHHh----ccCCCCCHHHHHHHHHHHHhCCCCCceEEec
Confidence            000000000    0012357899999999998866544444443

>PRK05650 short chain dehydrogenase; Provisional

Probab=99.82  E-value=6e-19  Score=151.03  Aligned_cols=206  Identities=15%  Similarity=0.100  Sum_probs=141.4

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      |+|+||||||+||+++++.|+++|++|++++|+.     ...+. ...+.   ....++.++.+|+.|.+++.+++.   
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~-----~~~~~~~~~l~---~~~~~~~~~~~D~~~~~~~~~~~~~i~   72 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGWRLALADVNE-----EGGEETLKLLR---EAGGDGFYQRCDVRDYSQLTALAQACE   72 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHH---hcCCceEEEEccCCCHHHHHHHHHHHH
Confidence            4799999999999999999999999999999986     22221 11111   112467889999999988877664   


Q ss_pred             ----CccEEEEecccCCCC---CCC--hhhHHHHHHHHHHHHHHHH----HHhcCCccEEEEecccceeecCCCCCCccc
Q 020104           82 ----GCTGVLHVATPVDFE---DKE--PEEVITQRAINGTLGILKS----CLKSGTVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        82 ----~~d~Vih~a~~~~~~---~~~--~~~~~~~~n~~~~~~l~~~----~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                          ++|+|||+|+.....   ..+  ..+..+++|+.++..+.++    +++.+ ..++|++||...+...        
T Consensus        73 ~~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~vsS~~~~~~~--------  143 (270)
T PRK05650         73 EKWGGIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQK-SGRIVNIASMAGLMQG--------  143 (270)
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCC-CCEEEEECChhhcCCC--------
Confidence                689999999865421   111  1124678998877776665    45555 6799999997655311        


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCccc
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEY  225 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  225 (331)
                                    +....|+.+|.+.+.+.+.++.+.   ++++++++|+.+.++......... .........   ..
T Consensus       144 --------------~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~-~~~~~~~~~---~~  205 (270)
T PRK05650        144 --------------PAMSSYNVAKAGVVALSETLLVELADDEIGVHVVCPSFFQTNLLDSFRGPN-PAMKAQVGK---LL  205 (270)
T ss_pred             --------------CCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccCcccccccCc-hhHHHHHHH---Hh
Confidence                          123479999999888888887764   799999999999887533211111 000000000   00


Q ss_pred             ccCCCccceeHHHHHHHHHHhhcCC
Q 020104          226 GFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       226 ~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                          ...+++++|+|+.++.++.+.
T Consensus       206 ----~~~~~~~~~vA~~i~~~l~~~  226 (270)
T PRK05650        206 ----EKSPITAADIADYIYQQVAKG  226 (270)
T ss_pred             ----hcCCCCHHHHHHHHHHHHhCC
Confidence                014679999999999999864

>PRK08251 short chain dehydrogenase; Provisional

Probab=99.82  E-value=6.3e-19  Score=149.03  Aligned_cols=197  Identities=15%  Similarity=0.126  Sum_probs=140.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccc-cccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLS-FLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      +++++||||+|+||++++++|+++|++|++++|++     .....+. .+... ....++.++.+|+.|.+++.++++  
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~-----~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~   75 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRT-----DRLEELKAELLAR-YPGIKVAVAALDVNDHDQVFEVFAEF   75 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCH-----HHHHHHHHHHHhh-CCCceEEEEEcCCCCHHHHHHHHHHH
Confidence            57899999999999999999999999999999987     2222211 11110 012467889999999988877654  


Q ss_pred             -----CccEEEEecccCCCCC-----CChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCcc
Q 020104           82 -----GCTGVLHVATPVDFED-----KEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~~-----~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                           ++|+|||+||......     .+.....+++|+.++.++++++.    +.+ .+++|++||.......       
T Consensus        76 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~~~~-------  147 (248)
T PRK08251         76 RDELGGLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQG-SGHLVLISSVSAVRGL-------  147 (248)
T ss_pred             HHHcCCCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEEeccccccCC-------
Confidence                 5899999998644211     11123678899999988888764    445 6799999996654211       


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcc
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREE  224 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~  224 (331)
                                    +.+...|+.+|.+.+.+.+.+..+.   +++++.++|+.+.++....             .+.   
T Consensus       148 --------------~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~-------------~~~---  197 (248)
T PRK08251        148 --------------PGVKAAYAASKAGVASLGEGLRAELAKTPIKVSTIEPGYIRSEMNAK-------------AKS---  197 (248)
T ss_pred             --------------CCCcccHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcCcchhhhc-------------ccc---
Confidence                          0123469999999999888877653   6899999999997663211             000   


Q ss_pred             cccCCCccceeHHHHHHHHHHhhcCC
Q 020104          225 YGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       225 ~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                           ....+..+|.|++++.+++++
T Consensus       198 -----~~~~~~~~~~a~~i~~~~~~~  218 (248)
T PRK08251        198 -----TPFMVDTETGVKALVKAIEKE  218 (248)
T ss_pred             -----CCccCCHHHHHHHHHHHHhcC
Confidence                 014578999999999999764

>PRK08589 short chain dehydrogenase; Validated

Probab=99.82  E-value=7.2e-19  Score=150.64  Aligned_cols=228  Identities=16%  Similarity=0.130  Sum_probs=147.4

Q ss_pred             CCC-CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH
Q 020104            1 MEE-GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         1 M~~-~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      |.. .+|++|||||+|+||.++++.|+++|++|++++|+.     ...+....+.+   ...++.++.+|+.+.+++.++
T Consensus         1 m~~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~-----~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~   72 (272)
T PRK08589          1 MKRLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIAE-----AVSETVDKIKS---NGGKAKAYHVDISDEQQVKDF   72 (272)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcH-----HHHHHHHHHHh---cCCeEEEEEeecCCHHHHHHH
Confidence            443 357899999999999999999999999999999874     22222222221   124588899999999888776


Q ss_pred             hc-------CccEEEEecccCCC---CCC---ChhhHHHHHHHHHHHHHHHHHHhc---CCccEEEEecccceeecCCCC
Q 020104           80 IA-------GCTGVLHVATPVDF---EDK---EPEEVITQRAINGTLGILKSCLKS---GTVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        80 ~~-------~~d~Vih~a~~~~~---~~~---~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~  143 (331)
                      ++       ++|++||+|+....   ...   +..+..+++|+.++..+++++...   . -.++|++||...+...   
T Consensus        73 ~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~---  148 (272)
T PRK08589         73 ASEIKEQFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQ-GGSIINTSSFSGQAAD---  148 (272)
T ss_pred             HHHHHHHcCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCEEEEeCchhhcCCC---
Confidence            64       48999999986431   111   112367788998887776665432   2 2599999997655210   


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhC
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILG  220 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~  220 (331)
                                         +....|+.+|.+.+.+++.++.+.   +++++.+.||.+..+.........-.........
T Consensus       149 -------------------~~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~  209 (272)
T PRK08589        149 -------------------LYRSGYNAAKGAVINFTKSIAIEYGRDGIRANAIAPGTIETPLVDKLTGTSEDEAGKTFRE  209 (272)
T ss_pred             -------------------CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCchhhhhcccchhhHHHHHhh
Confidence                               113479999999999999988754   7999999999998764221000000000000000


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                      ......  ....+...+|+++++++++..+.  ..| .+.+.+.
T Consensus       210 ~~~~~~--~~~~~~~~~~va~~~~~l~s~~~~~~~G~~i~vdgg  251 (272)
T PRK08589        210 NQKWMT--PLGRLGKPEEVAKLVVFLASDDSSFITGETIRIDGG  251 (272)
T ss_pred             hhhccC--CCCCCcCHHHHHHHHHHHcCchhcCcCCCEEEECCC
Confidence            000000  01256789999999999987533  234 3445544

>PRK07041 short chain dehydrogenase; Provisional

Probab=99.82  E-value=4.2e-19  Score=148.36  Aligned_cols=214  Identities=19%  Similarity=0.123  Sum_probs=148.0

Q ss_pred             EEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---CccE
Q 020104            9 CVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---GCTG   85 (331)
Q Consensus         9 lVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---~~d~   85 (331)
                      |||||+|+||+++++.|+++|++|++++|+.     ........  .+. ...+++++.+|+.|.+++.++++   ++|+
T Consensus         1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~-----~~~~~~~~--~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~   72 (230)
T PRK07041          1 LVVGGSSGIGLALARAFAAEGARVTIASRSR-----DRLAAAAR--ALG-GGAPVRTAALDITDEAAVDAFFAEAGPFDH   72 (230)
T ss_pred             CeecCCChHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHH--HHh-cCCceEEEEccCCCHHHHHHHHHhcCCCCE
Confidence            6999999999999999999999999999986     22211110  110 12468889999999999998886   4799


Q ss_pred             EEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhh
Q 020104           86 VLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIR  159 (331)
Q Consensus        86 Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~  159 (331)
                      +||+++.....      ..+. ...+++|+.++.++.++....+ ..++|++||...+..                    
T Consensus        73 li~~ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~-~g~iv~~ss~~~~~~--------------------  130 (230)
T PRK07041         73 VVITAADTPGGPVRALPLAAA-QAAMDSKFWGAYRVARAARIAP-GGSLTFVSGFAAVRP--------------------  130 (230)
T ss_pred             EEECCCCCCCCChhhCCHHHH-HHHHHHHHHHHHHHHhhhhhcC-CeEEEEECchhhcCC--------------------
Confidence            99999864321      1223 3788999999999999666555 679999999876531                    


Q ss_pred             hcCCCCchhHhhHHHHHHHHHHHHHHc-CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHHH
Q 020104          160 KLDSWGKSYAISKTLTERAALEFAEEH-GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDD  238 (331)
Q Consensus       160 ~~~~~~~~Y~~~K~~~e~~~~~~~~~~-~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D  238 (331)
                        .++.+.|+.+|.+.+.+++.++.+. +++++.++|+.+-++................... ....     ..+...+|
T Consensus       131 --~~~~~~Y~~sK~a~~~~~~~la~e~~~irv~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~d  202 (230)
T PRK07041        131 --SASGVLQGAINAALEALARGLALELAPVRVNTVSPGLVDTPLWSKLAGDAREAMFAAAAE-RLPA-----RRVGQPED  202 (230)
T ss_pred             --CCcchHHHHHHHHHHHHHHHHHHHhhCceEEEEeecccccHHHHhhhccchHHHHHHHHh-cCCC-----CCCcCHHH
Confidence              1234579999999999999988764 6889999999886653211000000111111111 1111     13567899


Q ss_pred             HHHHHHHhhcCCCC-CceEEEec
Q 020104          239 VARAHIFLLEYPDA-KGRYICSS  260 (331)
Q Consensus       239 ~a~~~~~~~~~~~~-~~~~~~~~  260 (331)
                      +++++..++..... +..|++.+
T Consensus       203 va~~~~~l~~~~~~~G~~~~v~g  225 (230)
T PRK07041        203 VANAILFLAANGFTTGSTVLVDG  225 (230)
T ss_pred             HHHHHHHHhcCCCcCCcEEEeCC
Confidence            99999999987644 44677654

>PRK08267 short chain dehydrogenase; Provisional

Probab=99.82  E-value=5.6e-19  Score=150.39  Aligned_cols=202  Identities=18%  Similarity=0.167  Sum_probs=140.1

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      ||++|||||||+||++++++|+++|++|++++|+.     ...+.+..  ...  ..++.++.+|+.|.+++.+++.   
T Consensus         1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~-----~~~~~~~~--~~~--~~~~~~~~~D~~~~~~v~~~~~~~~   71 (260)
T PRK08267          1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINE-----AGLAALAA--ELG--AGNAWTGALDVTDRAAWDAALADFA   71 (260)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH-----HHHHHHHH--Hhc--CCceEEEEecCCCHHHHHHHHHHHH
Confidence            46899999999999999999999999999999987     22222211  111  2468899999999988877654   


Q ss_pred             -----CccEEEEecccCCCC---CC--ChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCCcc
Q 020104           82 -----GCTGVLHVATPVDFE---DK--EPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~---~~--~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                           ++|+|||+|+.....   ..  +..+..+++|+.++.++++++..    .+ ..++|++||.......       
T Consensus        72 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~~~-------  143 (260)
T PRK08267         72 AATGGRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATP-GARVINTSSASAIYGQ-------  143 (260)
T ss_pred             HHcCCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CCEEEEeCchhhCcCC-------
Confidence                 469999999865421   11  11237889999999999888743    34 5799999997554311       


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcc
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREE  224 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~  224 (331)
                                     .....|+.+|...+.+.+.++.+   .++++++++|+.+..+..........   .....    .
T Consensus       144 ---------------~~~~~Y~~sKaa~~~~~~~l~~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~---~~~~~----~  201 (260)
T PRK08267        144 ---------------PGLAVYSATKFAVRGLTEALDLEWRRHGIRVADVMPLFVDTAMLDGTSNEVD---AGSTK----R  201 (260)
T ss_pred             ---------------CCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCcCCcccccccchhh---hhhHh----h
Confidence                           11346999999999999888754   37999999999987653221000000   00000    0


Q ss_pred             cccCCCccceeHHHHHHHHHHhhcCC
Q 020104          225 YGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       225 ~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      .     ...+..+|++++++.++...
T Consensus       202 ~-----~~~~~~~~va~~~~~~~~~~  222 (260)
T PRK08267        202 L-----GVRLTPEDVAEAVWAAVQHP  222 (260)
T ss_pred             c-----cCCCCHHHHHHHHHHHHhCC
Confidence            0     12356799999999999654

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=99.82  E-value=4.9e-19  Score=148.80  Aligned_cols=213  Identities=16%  Similarity=0.166  Sum_probs=145.8

Q ss_pred             EEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcc-ccccccCCCCCCCcEEEEeCCCCCCccHHHHhc-----
Q 020104            8 VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSK-DLSFLKNLPGASERLRIFHADLSHPDGFDAAIA-----   81 (331)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-----   81 (331)
                      |||||++|+||++++++|+++|++|++++|+..    .... ....+..   ....+.++.+|+.|.+++.++++     
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~----~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~   73 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSE----EGAEEVVEELKA---YGVKALGVVCDVSDREDVKAVVEEIEEE   73 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCch----hHHHHHHHHHHh---cCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            689999999999999999999999999988752    1111 1111111   12357889999999998887764     


Q ss_pred             --CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCCCCCCcccC
Q 020104           82 --GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYNDKDVDMMDE  149 (331)
Q Consensus        82 --~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~E  149 (331)
                        ++|+|||+++.....      ..++ ...+++|+.++.++++++.+.    + .+++|++||...+. +.        
T Consensus        74 ~~~id~vi~~ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~v~~sS~~~~~-g~--------  142 (239)
T TIGR01830        74 LGPIDILVNNAGITRDNLLMRMKEEDW-DAVIDTNLTGVFNLTQAVLRIMIKQR-SGRIINISSVVGLM-GN--------  142 (239)
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHhcC-CeEEEEECCccccC-CC--------
Confidence              479999999865321      1223 377889999999999988753    3 56999999965442 11        


Q ss_pred             CCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccc
Q 020104          150 TFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYG  226 (331)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (331)
                                   ++...|+.+|.+.+.+++.++.+   .+++++++||+.+.++.... ....   ........ ... 
T Consensus       143 -------------~~~~~y~~~k~a~~~~~~~l~~~~~~~g~~~~~i~pg~~~~~~~~~-~~~~---~~~~~~~~-~~~-  203 (239)
T TIGR01830       143 -------------AGQANYAASKAGVIGFTKSLAKELASRNITVNAVAPGFIDTDMTDK-LSEK---VKKKILSQ-IPL-  203 (239)
T ss_pred             -------------CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCCCChhhhh-cChH---HHHHHHhc-CCc-
Confidence                         11346999999999888887665   48999999999886653221 1111   11111111 111 


Q ss_pred             cCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          227 FLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       227 ~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                          ..+.+++|++++++.++....   .+.+|+++++
T Consensus       204 ----~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~g  237 (239)
T TIGR01830       204 ----GRFGTPEEVANAVAFLASDEASYITGQVIHVDGG  237 (239)
T ss_pred             ----CCCcCHHHHHHHHHHHhCcccCCcCCCEEEeCCC
Confidence                246789999999998885532   2446777554

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>PRK07069 short chain dehydrogenase; Validated

Probab=99.82  E-value=6.1e-19  Score=149.34  Aligned_cols=210  Identities=17%  Similarity=0.136  Sum_probs=140.2

Q ss_pred             eEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccc-cccCCCCCCCcEEEEeCCCCCCccHHHHhc----
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLS-FLKNLPGASERLRIFHADLSHPDGFDAAIA----   81 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----   81 (331)
                      +|+||||+|+||+++++.|+++|++|++++|+..    +..+.+. .+.... ....+..+.+|+.|.+++.++++    
T Consensus         1 ~ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~----~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~   75 (251)
T PRK07069          1 RAFITGAAGGLGRAIARRMAEQGAKVFLTDINDA----AGLDAFAAEINAAH-GEGVAFAAVQDVTDEAQWQALLAQAAD   75 (251)
T ss_pred             CEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcc----hHHHHHHHHHHhcC-CCceEEEEEeecCCHHHHHHHHHHHHH
Confidence            4899999999999999999999999999999731    2221111 111110 01234567899999988877664    


Q ss_pred             ---CccEEEEecccCCCCC---CC--hhhHHHHHHHH----HHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccC
Q 020104           82 ---GCTGVLHVATPVDFED---KE--PEEVITQRAIN----GTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDE  149 (331)
Q Consensus        82 ---~~d~Vih~a~~~~~~~---~~--~~~~~~~~n~~----~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E  149 (331)
                         ++|+|||+|+......   .+  .....+++|+.    +++.+++++++.+ .+++|++||...+...         
T Consensus        76 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~ii~~ss~~~~~~~---------  145 (251)
T PRK07069         76 AMGGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQ-PASIVNISSVAAFKAE---------  145 (251)
T ss_pred             HcCCccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC-CcEEEEecChhhccCC---------
Confidence               5799999998654221   11  11356778887    7788888888776 6899999998766311         


Q ss_pred             CCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc-----CCcEEEeccCceeCCCCCCCCCccH-HHHHHHHhCCCc
Q 020104          150 TFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH-----GLDLVTLIPSMVVGPFICPKFAGSV-RSSLALILGNRE  223 (331)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~-----~~~~~ilRp~~v~G~~~~~~~~~~~-~~~~~~~~~~~~  223 (331)
                                   +....|+.+|...+.+++.++.+.     +++++.++|+.+.++.......... ........ ...
T Consensus       146 -------------~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~-~~~  211 (251)
T PRK07069        146 -------------PDYTAYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTGIVDPIFQRLGEEEATRKLA-RGV  211 (251)
T ss_pred             -------------CCCchhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCcchhHHhhhccchhHHHHHh-ccC
Confidence                         113469999999999999877653     4889999999998875332110000 00011111 111


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      ..     ..+.+++|+++++++++..+
T Consensus       212 ~~-----~~~~~~~~va~~~~~l~~~~  233 (251)
T PRK07069        212 PL-----GRLGEPDDVAHAVLYLASDE  233 (251)
T ss_pred             CC-----CCCcCHHHHHHHHHHHcCcc
Confidence            11     25678999999999987654

>PRK07326 short chain dehydrogenase; Provisional

Probab=99.82  E-value=7.1e-19  Score=147.64  Aligned_cols=198  Identities=21%  Similarity=0.222  Sum_probs=141.2

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      .++++|+||||+|+||++++++|+++|++|++++|++     .....+ ..+..   . .++..+.+|+.|.+++.++++
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~-----~~~~~~~~~l~~---~-~~~~~~~~D~~~~~~~~~~~~   74 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQ-----KELEEAAAELNN---K-GNVLGLAADVRDEADVQRAVD   74 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCH-----HHHHHHHHHHhc---c-CcEEEEEccCCCHHHHHHHHH
Confidence            3457899999999999999999999999999999986     222211 11111   1 468889999999988877665


Q ss_pred             -------CccEEEEecccCCCCC-----CChhhHHHHHHHHHHHHHHHHHHhc---CCccEEEEecccceeecCCCCCCc
Q 020104           82 -------GCTGVLHVATPVDFED-----KEPEEVITQRAINGTLGILKSCLKS---GTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -------~~d~Vih~a~~~~~~~-----~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                             ++|+|||+++......     .+.....+++|+.++..+++++.+.   + .+++|++||...+.  .     
T Consensus        75 ~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~iv~~ss~~~~~--~-----  146 (237)
T PRK07326         75 AIVAAFGGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRG-GGYIINISSLAGTN--F-----  146 (237)
T ss_pred             HHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHC-CeEEEEECChhhcc--C-----
Confidence                   6899999998654211     1112367889999999988887643   3 46899999965442  0     


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE  223 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  223 (331)
                                     ..+...|+.+|.+.+.+.+.++.+   .+++++++||+.+.++..... .             ..
T Consensus       147 ---------------~~~~~~y~~sk~a~~~~~~~~~~~~~~~gi~v~~v~pg~~~t~~~~~~-~-------------~~  197 (237)
T PRK07326        147 ---------------FAGGAAYNASKFGLVGFSEAAMLDLRQYGIKVSTIMPGSVATHFNGHT-P-------------SE  197 (237)
T ss_pred             ---------------CCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeccccCcccccc-c-------------ch
Confidence                           011346999999999888887643   489999999999877632110 0             00


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCCC
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYPD  251 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~  251 (331)
                      ..     ...+..+|++++++.++..+.
T Consensus       198 ~~-----~~~~~~~d~a~~~~~~l~~~~  220 (237)
T PRK07326        198 KD-----AWKIQPEDIAQLVLDLLKMPP  220 (237)
T ss_pred             hh-----hccCCHHHHHHHHHHHHhCCc
Confidence            00     023678999999999998764

>PRK06057 short chain dehydrogenase; Provisional

Probab=99.82  E-value=2e-18  Score=146.56  Aligned_cols=205  Identities=19%  Similarity=0.184  Sum_probs=136.9

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      +++|+||||+|+||.+++++|+++|++|++++|+.     ...+...  .++     ...++.+|+.|.+++.++++   
T Consensus         7 ~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~-----~~~~~~~--~~~-----~~~~~~~D~~~~~~~~~~~~~~~   74 (255)
T PRK06057          7 GRVAVITGGGSGIGLATARRLAAEGATVVVGDIDP-----EAGKAAA--DEV-----GGLFVPTDVTDEDAVNALFDTAA   74 (255)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH-----HHHHHHH--HHc-----CCcEEEeeCCCHHHHHHHHHHHH
Confidence            57899999999999999999999999999999976     2211111  111     12578899999988887775   


Q ss_pred             ----CccEEEEecccCCCCC-----C--ChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCc
Q 020104           82 ----GCTGVLHVATPVDFED-----K--EPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 ----~~d~Vih~a~~~~~~~-----~--~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                          ++|+|||+|+......     .  +..+..+++|+.++..+++.+.    +.+ ..++|++||..... +..    
T Consensus        75 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-~g~iv~~sS~~~~~-g~~----  148 (255)
T PRK06057         75 ETYGSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQG-KGSIINTASFVAVM-GSA----  148 (255)
T ss_pred             HHcCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhC-CcEEEEEcchhhcc-CCC----
Confidence                5799999998643210     1  1123778899999877777654    344 46899999864321 110    


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE  223 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  223 (331)
                                      .+...|+.+|.+.+.+.+.++.+   .++++++++||.+.++..................  ..
T Consensus       149 ----------------~~~~~Y~~sKaal~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~--~~  210 (255)
T PRK06057        149 ----------------TSQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQELFAKDPERAARRLV--HV  210 (255)
T ss_pred             ----------------CCCcchHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCCcCCchhhhhccCCHHHHHHHHh--cC
Confidence                            11336999998877777765543   3799999999999887533211111111111010  01


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      ..     ..+..++|+++++..++...
T Consensus       211 ~~-----~~~~~~~~~a~~~~~l~~~~  232 (255)
T PRK06057        211 PM-----GRFAEPEEIAAAVAFLASDD  232 (255)
T ss_pred             CC-----CCCcCHHHHHHHHHHHhCcc
Confidence            11     26789999999999888653

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=99.82  E-value=9.7e-19  Score=147.70  Aligned_cols=206  Identities=17%  Similarity=0.162  Sum_probs=138.2

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      +|.++||||+|+||++++++|+++|++|++..+...   ......+..+.   .....+..+.+|+.|.+++.+++.   
T Consensus         3 ~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~   76 (246)
T PRK12938          3 QRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNS---PRRVKWLEDQK---ALGFDFIASEGNVGDWDSTKAAFDKVK   76 (246)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCCh---HHHHHHHHHHH---hcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence            468999999999999999999999999988654321   01111122111   112357788999999988877664   


Q ss_pred             ----CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCCCCcc
Q 020104           82 ----GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 ----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                          ++|+|||+|+....      ...++ +..+++|+.++..+.+++    ++.+ ..++|++||..... +       
T Consensus        77 ~~~~~id~li~~ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~isS~~~~~-~-------  146 (246)
T PRK12938         77 AEVGEIDVLVNNAGITRDVVFRKMTREDW-TAVIDTNLTSLFNVTKQVIDGMVERG-WGRIINISSVNGQK-G-------  146 (246)
T ss_pred             HHhCCCCEEEECCCCCCCCChhhCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHHcC-CeEEEEEechhccC-C-------
Confidence                58999999986431      11123 377889999977766554    4445 67999999965431 1       


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcc
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREE  224 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~  224 (331)
                                    .+....|+.+|.+.+.+++.++.+   .+++++.++|+.+.++......+    .......+. ..
T Consensus       147 --------------~~~~~~y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~~~t~~~~~~~~----~~~~~~~~~-~~  207 (246)
T PRK12938        147 --------------QFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAIRP----DVLEKIVAT-IP  207 (246)
T ss_pred             --------------CCCChhHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEecccCCchhhhcCh----HHHHHHHhc-CC
Confidence                          012447999999988888877654   47999999999998775322111    111111111 11


Q ss_pred             cccCCCccceeHHHHHHHHHHhhcCC
Q 020104          225 YGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       225 ~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      .     ..+...+|++.++++++..+
T Consensus       208 ~-----~~~~~~~~v~~~~~~l~~~~  228 (246)
T PRK12938        208 V-----RRLGSPDEIGSIVAWLASEE  228 (246)
T ss_pred             c-----cCCcCHHHHHHHHHHHcCcc
Confidence            1     24678999999999988754

>PRK06197 short chain dehydrogenase; Provisional

Probab=99.82  E-value=3.8e-19  Score=155.00  Aligned_cols=182  Identities=18%  Similarity=0.093  Sum_probs=125.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|+|+||||+|+||++++++|+++|++|++++|+..     .... ...+.+. .....+.++.+|+.|.+++.++++ 
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~-----~~~~~~~~l~~~-~~~~~~~~~~~Dl~d~~~v~~~~~~   88 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLD-----KGKAAAARITAA-TPGADVTLQELDLTSLASVRAAADA   88 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHHHHHHh-CCCCceEEEECCCCCHHHHHHHHHH
Confidence            3578999999999999999999999999999999862     2111 1122111 012467889999999998877664 


Q ss_pred             ------CccEEEEecccCCCC----CCChhhHHHHHHHHH----HHHHHHHHHhcCCccEEEEecccceeecCCCCCCcc
Q 020104           82 ------GCTGVLHVATPVDFE----DKEPEEVITQRAING----TLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~----~~~~~~~~~~~n~~~----~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                            ++|+|||+||.....    ..+. +..+++|+.+    +..+++.+++.+ .+++|++||...+.++..   +.
T Consensus        89 ~~~~~~~iD~li~nAg~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vSS~~~~~~~~~---~~  163 (306)
T PRK06197         89 LRAAYPRIDLLINNAGVMYTPKQTTADGF-ELQFGTNHLGHFALTGLLLDRLLPVP-GSRVVTVSSGGHRIRAAI---HF  163 (306)
T ss_pred             HHhhCCCCCEEEECCccccCCCccCCCCc-chhhhhhhHHHHHHHHHHHHHHhhCC-CCEEEEECCHHHhccCCC---Cc
Confidence                  589999999864321    1223 3678999998    666777776665 579999999765432211   11


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEE--eccCceeCCC
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVT--LIPSMVVGPF  202 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~i--lRp~~v~G~~  202 (331)
                      ++..+.      ....+...|+.+|.+.+.+.+.++.+.   ++++++  +.||.+..+.
T Consensus       164 ~~~~~~------~~~~~~~~Y~~SK~a~~~~~~~la~~l~~~~i~v~~v~~~PG~v~T~~  217 (306)
T PRK06197        164 DDLQWE------RRYNRVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAAHPGVSNTEL  217 (306)
T ss_pred             cccCcc------cCCCcHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEeCCCcccCcc
Confidence            111100      012345689999999999999887764   555544  5799887664

>PRK08278 short chain dehydrogenase; Provisional

Probab=99.82  E-value=1.4e-18  Score=148.86  Aligned_cols=220  Identities=17%  Similarity=0.240  Sum_probs=144.6

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccc-cCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFL-KNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      ..+++++||||+|+||+++++.|+++|++|++++|+.+.... ....+..+ .++.....++.++.+|+.+.+++.++++
T Consensus         4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~   82 (273)
T PRK08278          4 LSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPK-LPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVA   82 (273)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccc-hhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence            345789999999999999999999999999999997621100 00011111 0111112467889999999998887764


Q ss_pred             -------CccEEEEecccCCCCC---CC--hhhHHHHHHHHHHHHHHHHHHhc---CCccEEEEecccceeecCCCCCCc
Q 020104           82 -------GCTGVLHVATPVDFED---KE--PEEVITQRAINGTLGILKSCLKS---GTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -------~~d~Vih~a~~~~~~~---~~--~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                             ++|+|||+|+......   .+  ..+..+++|+.++.++++++...   ..-.++|++||.....   ..   
T Consensus        83 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~---~~---  156 (273)
T PRK08278         83 KAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLD---PK---  156 (273)
T ss_pred             HHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhcc---cc---
Confidence                   6899999998643211   11  12367889999999999988642   1135889998843210   00   


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCc-eeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSM-VVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~-v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                           +         .++...|+.+|.+.|.+++.++.+.   +++++.+.|+. +-.+.            .....+..
T Consensus       157 -----~---------~~~~~~Y~~sK~a~~~~~~~la~el~~~~I~v~~i~Pg~~i~t~~------------~~~~~~~~  210 (273)
T PRK08278        157 -----W---------FAPHTAYTMAKYGMSLCTLGLAEEFRDDGIAVNALWPRTTIATAA------------VRNLLGGD  210 (273)
T ss_pred             -----c---------cCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCccccHH------------HHhccccc
Confidence                 0         0224579999999999999988765   79999999984 32221            00001111


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC--CCceEEEec
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKGRYICSS  260 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~~~  260 (331)
                      ...     ..+...+|++++++.++....  ..|.+.+.+
T Consensus       211 ~~~-----~~~~~p~~va~~~~~l~~~~~~~~~G~~~~~~  245 (273)
T PRK08278        211 EAM-----RRSRTPEIMADAAYEILSRPAREFTGNFLIDE  245 (273)
T ss_pred             ccc-----cccCCHHHHHHHHHHHhcCccccceeEEEecc
Confidence            111     246788999999999987643  345554443

>PRK06949 short chain dehydrogenase; Provisional

Probab=99.82  E-value=8.9e-19  Score=149.00  Aligned_cols=214  Identities=14%  Similarity=0.129  Sum_probs=147.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|+|+||||+|+||+++++.|+++|++|+++.|+.     +..+.+...  +.....++.++.+|+.+.+++.++++  
T Consensus         8 ~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~-----~~~~~~~~~--l~~~~~~~~~~~~D~~~~~~~~~~~~~~   80 (258)
T PRK06949          8 EGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRV-----ERLKELRAE--IEAEGGAAHVVSLDVTDYQSIKAAVAHA   80 (258)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHH--HHhcCCcEEEEEecCCCHHHHHHHHHHH
Confidence            357999999999999999999999999999999987     222222111  11112467889999999988888765  


Q ss_pred             -----CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhc----C-------CccEEEEecccceeec
Q 020104           82 -----GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKS----G-------TVKRVVYTSSNAAVFY  139 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~----~-------~~~~~v~~SS~~~~~~  139 (331)
                           ++|+|||+|+.....      ..++. ..+++|+.++..+++++...    .       ...++|++||...+..
T Consensus        81 ~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~-~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~  159 (258)
T PRK06949         81 ETEAGTIDILVNNSGVSTTQKLVDVTPADFD-FVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLRV  159 (258)
T ss_pred             HHhcCCCCEEEECCCCCCCCCcccCCHHHHH-HHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccCC
Confidence                 589999999854311      12233 67889999999888876521    1       0258999999765421


Q ss_pred             CCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHH
Q 020104          140 NDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLA  216 (331)
Q Consensus       140 ~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~  216 (331)
                                            .++..+|+.+|.+.+.+++.++.+   .++++++++||.++++........   ....
T Consensus       160 ----------------------~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pG~v~t~~~~~~~~~---~~~~  214 (258)
T PRK06949        160 ----------------------LPQIGLYCMSKAAVVHMTRAMALEWGRHGINVNAICPGYIDTEINHHHWET---EQGQ  214 (258)
T ss_pred             ----------------------CCCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCCcCCcchhccCh---HHHH
Confidence                                  012347999999999999988765   379999999999998854321111   1111


Q ss_pred             HHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC--CCceE
Q 020104          217 LILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKGRY  256 (331)
Q Consensus       217 ~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~  256 (331)
                      .+... ...     ..+...+|+++++.+++....  ..|.+
T Consensus       215 ~~~~~-~~~-----~~~~~p~~~~~~~~~l~~~~~~~~~G~~  250 (258)
T PRK06949        215 KLVSM-LPR-----KRVGKPEDLDGLLLLLAADESQFINGAI  250 (258)
T ss_pred             HHHhc-CCC-----CCCcCHHHHHHHHHHHhChhhcCCCCcE
Confidence            11111 111     256778999999999987543  34544

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=99.82  E-value=1.2e-18  Score=149.78  Aligned_cols=207  Identities=15%  Similarity=0.149  Sum_probs=142.3

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      +++++||||+|+||++++++|+++|++|++++|+.     ...+.+ +.+..   ...++.++.+|+.|.+++..+++  
T Consensus        10 ~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~v~~~~~~~   81 (278)
T PRK08277         10 GKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQ-----EKAEAVVAEIKA---AGGEALAVKADVLDKESLEQARQQI   81 (278)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHh---cCCeEEEEECCCCCHHHHHHHHHHH
Confidence            47899999999999999999999999999999976     222111 11111   12357889999999988877654  


Q ss_pred             -----CccEEEEecccCCCC---------------------CCChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEe
Q 020104           82 -----GCTGVLHVATPVDFE---------------------DKEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYT  131 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~---------------------~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~  131 (331)
                           ++|++||+|+.....                     ..++ +..+++|+.++..+++++    ++.+ ..++|++
T Consensus        82 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~ii~i  159 (278)
T PRK08277         82 LEDFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGF-EFVFDLNLLGTLLPTQVFAKDMVGRK-GGNIINI  159 (278)
T ss_pred             HHHcCCCCEEEECCCCCCcccccccccccccccccccccCCHHHH-HHHHhhhhHHHHHHHHHHHHHHHhcC-CcEEEEE
Confidence                 689999999853211                     1122 367889999887665544    4444 5799999


Q ss_pred             cccceeecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCC
Q 020104          132 SSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFA  208 (331)
Q Consensus       132 SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~  208 (331)
                      ||...+..                      .++...|+.+|.+.+.+++.++.+.   +++++.++||.+.++.......
T Consensus       160 sS~~~~~~----------------------~~~~~~Y~~sK~a~~~l~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~  217 (278)
T PRK08277        160 SSMNAFTP----------------------LTKVPAYSAAKAAISNFTQWLAVHFAKVGIRVNAIAPGFFLTEQNRALLF  217 (278)
T ss_pred             ccchhcCC----------------------CCCCchhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeccCcCcchhhhhc
Confidence            99776531                      1123469999999999999888765   7999999999998874321100


Q ss_pred             c---cHHHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcC
Q 020104          209 G---SVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEY  249 (331)
Q Consensus       209 ~---~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~  249 (331)
                      .   ............ ...     ..+...+|+++++++++..
T Consensus       218 ~~~~~~~~~~~~~~~~-~p~-----~r~~~~~dva~~~~~l~s~  255 (278)
T PRK08277        218 NEDGSLTERANKILAH-TPM-----GRFGKPEELLGTLLWLADE  255 (278)
T ss_pred             cccccchhHHHHHhcc-CCc-----cCCCCHHHHHHHHHHHcCc
Confidence            0   000011111111 111     2577899999999998876

>PRK09242 tropinone reductase; Provisional

Probab=99.82  E-value=2.2e-18  Score=146.52  Aligned_cols=221  Identities=14%  Similarity=0.120  Sum_probs=149.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|+++||||+|.||+++++.|+++|++|++++|+.     +..+.+ ..+... ....++.++.+|+.+.+++.++++ 
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~-----~~~~~~~~~l~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~   81 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDA-----DALAQARDELAEE-FPEREVHGLAADVSDDEDRRAILDW   81 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH-----HHHHHHHHHHHhh-CCCCeEEEEECCCCCHHHHHHHHHH
Confidence            357899999999999999999999999999999987     222221 111111 012467889999999987776654 


Q ss_pred             ------CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|+|||+|+....      ..+++. ..+++|+.++..+++++.    +.+ ..++|++||...+...     
T Consensus        82 ~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~-~~~~~n~~~~~~l~~~~~~~~~~~~-~~~ii~~sS~~~~~~~-----  154 (257)
T PRK09242         82 VEDHWDGLHILVNNAGGNIRKAAIDYTEDEWR-GIFETNLFSAFELSRYAHPLLKQHA-SSAIVNIGSVSGLTHV-----  154 (257)
T ss_pred             HHHHcCCCCEEEECCCCCCCCChhhCCHHHHH-HHHhhhhHHHHHHHHHHHHHHHhcC-CceEEEECccccCCCC-----
Confidence                  58999999986321      122333 678899999999988775    344 5799999997655311     


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                       .+...|+.+|...+.+++.++.+.   +++++.++||.+.++........  .......... 
T Consensus       155 -----------------~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~i~t~~~~~~~~~--~~~~~~~~~~-  214 (257)
T PRK09242        155 -----------------RSGAPYGMTKAALLQMTRNLAVEWAEDGIRVNAVAPWYIRTPLTSGPLSD--PDYYEQVIER-  214 (257)
T ss_pred             -----------------CCCcchHHHHHHHHHHHHHHHHHHHHhCeEEEEEEECCCCCcccccccCC--hHHHHHHHhc-
Confidence                             123469999999999999877553   79999999999988754321111  1111111111 


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEeccc
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSHT  262 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~~  262 (331)
                      ..+     ..+...+|++.++.+++....  ..| .+.+.+..
T Consensus       215 ~~~-----~~~~~~~~va~~~~~l~~~~~~~~~g~~i~~~gg~  252 (257)
T PRK09242        215 TPM-----RRVGEPEEVAAAVAFLCMPAASYITGQCIAVDGGF  252 (257)
T ss_pred             CCC-----CCCcCHHHHHHHHHHHhCcccccccCCEEEECCCe
Confidence            111     145678999999999987532  233 44455443

>PRK06172 short chain dehydrogenase; Provisional

Probab=99.82  E-value=1.6e-18  Score=146.98  Aligned_cols=219  Identities=16%  Similarity=0.153  Sum_probs=148.3

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+++|+||||+|+||.+++++|+++|++|++++|+.     +..+. ...+.+   ...++..+.+|+.|.+++.++++ 
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~i~~~~~~   77 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGAKVVVADRDA-----AGGEETVALIRE---AGGEALFVACDVTRDAEVKALVEQ   77 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH-----HHHHHHHHHHHh---cCCceEEEEcCCCCHHHHHHHHHH
Confidence            357999999999999999999999999999999987     22221 111211   12468899999999988877664 


Q ss_pred             ------CccEEEEecccCCCC-------CCChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCCC
Q 020104           82 ------GCTGVLHVATPVDFE-------DKEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~-------~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                            ++|+|||+|+.....       .+++ +..+++|+.++..+++++    .+.+ ..++|++||...+...    
T Consensus        78 ~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~-~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~ii~~sS~~~~~~~----  151 (253)
T PRK06172         78 TIAAYGRLDYAFNNAGIEIEQGRLAEGSEAEF-DAIMGVNVKGVWLCMKYQIPLMLAQG-GGAIVNTASVAGLGAA----  151 (253)
T ss_pred             HHHHhCCCCEEEECCCCCCCCCChhhCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEECchhhccCC----
Confidence                  469999999864311       1123 367889999987776654    3344 5699999997765311    


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                                        +....|+.+|.+.+.+++.++.++   +++++.+.||.+-.+....... ............
T Consensus       152 ------------------~~~~~Y~~sKaa~~~~~~~la~e~~~~~i~v~~i~PG~v~t~~~~~~~~-~~~~~~~~~~~~  212 (253)
T PRK06172        152 ------------------PKMSIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTDMFRRAYE-ADPRKAEFAAAM  212 (253)
T ss_pred             ------------------CCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhcc-cChHHHHHHhcc
Confidence                              113479999999999999888765   6999999999987664221100 001111111111


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCC--CCce-EEEecc
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKGR-YICSSH  261 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~  261 (331)
                       ..+     ..+...+|+++.+++++....  ..|. +.+.+.
T Consensus       213 -~~~-----~~~~~p~~ia~~~~~l~~~~~~~~~G~~i~~dgg  249 (253)
T PRK06172        213 -HPV-----GRIGKVEEVASAVLYLCSDGASFTTGHALMVDGG  249 (253)
T ss_pred             -CCC-----CCccCHHHHHHHHHHHhCccccCcCCcEEEECCC
Confidence             111     256789999999999997542  3454 445543

>PRK07109 short chain dehydrogenase; Provisional

Probab=99.81  E-value=1.5e-18  Score=152.60  Aligned_cols=202  Identities=16%  Similarity=0.119  Sum_probs=139.2

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      +++|+||||+|+||+++++.|+++|++|++++|+.     +..+.. ..+.+   ...++.++.+|+.|.+++.++++  
T Consensus         8 ~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~-----~~l~~~~~~l~~---~g~~~~~v~~Dv~d~~~v~~~~~~~   79 (334)
T PRK07109          8 RQVVVITGASAGVGRATARAFARRGAKVVLLARGE-----EGLEALAAEIRA---AGGEALAVVADVADAEAVQAAADRA   79 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHHH---cCCcEEEEEecCCCHHHHHHHHHHH
Confidence            46899999999999999999999999999999986     222211 11111   12467889999999998887754  


Q ss_pred             -----CccEEEEecccCCCCC---C--ChhhHHHHHHHHHHHH----HHHHHHhcCCccEEEEecccceeecCCCCCCcc
Q 020104           82 -----GCTGVLHVATPVDFED---K--EPEEVITQRAINGTLG----ILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~~---~--~~~~~~~~~n~~~~~~----l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                           ++|++||+|+......   .  +..+..+++|+.++.+    ++..+++.+ ..++|++||...+...       
T Consensus        80 ~~~~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~-~g~iV~isS~~~~~~~-------  151 (334)
T PRK07109         80 EEELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRD-RGAIIQVGSALAYRSI-------  151 (334)
T ss_pred             HHHCCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEeCChhhccCC-------
Confidence                 5899999998643211   1  1123677888776655    445555554 5799999998766311       


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc-----CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH-----GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~-----~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                     +....|+.+|...+.+.+.++.+.     ++++++++|+.+.++...     ..   ........
T Consensus       152 ---------------~~~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~~~-----~~---~~~~~~~~  208 (334)
T PRK07109        152 ---------------PLQSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQFD-----WA---RSRLPVEP  208 (334)
T ss_pred             ---------------CcchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCchhh-----hh---hhhccccc
Confidence                           123479999999988888776542     699999999998766311     00   00000111


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      ...     ..+...+|+|+++++++.++
T Consensus       209 ~~~-----~~~~~pe~vA~~i~~~~~~~  231 (334)
T PRK07109        209 QPV-----PPIYQPEVVADAILYAAEHP  231 (334)
T ss_pred             cCC-----CCCCCHHHHHHHHHHHHhCC
Confidence            111     25678999999999999876

>PRK05867 short chain dehydrogenase; Provisional

Probab=99.81  E-value=1.1e-18  Score=147.87  Aligned_cols=219  Identities=14%  Similarity=0.168  Sum_probs=147.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|++|||||+|.||.++++.|+++|++|++++|+.     +..+.+..  ++.....++..+.+|+.|++++.++++  
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~~--~l~~~~~~~~~~~~D~~~~~~~~~~~~~~   80 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHL-----DALEKLAD--EIGTSGGKVVPVCCDVSQHQQVTSMLDQV   80 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCH-----HHHHHHHH--HHHhcCCeEEEEEccCCCHHHHHHHHHHH
Confidence            457899999999999999999999999999999986     22222111  111112467889999999988877664  


Q ss_pred             -----CccEEEEecccCCCCC-----CChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCCCCCCcc
Q 020104           82 -----GCTGVLHVATPVDFED-----KEPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~~-----~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                           ++|++||+|+......     .+..+..+++|+.++..+++++...    +.-.++|++||........      
T Consensus        81 ~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~------  154 (253)
T PRK05867         81 TAELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHIINV------  154 (253)
T ss_pred             HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCCCC------
Confidence                 6899999998654211     1112367789999999998887532    2124799998865321000      


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcc
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREE  224 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~  224 (331)
                                    +.....|+.+|.+.+.+++.++.+.   +++++.++||.+-.+.... ..    ........ ...
T Consensus       155 --------------~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~i~PG~v~t~~~~~-~~----~~~~~~~~-~~~  214 (253)
T PRK05867        155 --------------PQQVSHYCASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTELVEP-YT----EYQPLWEP-KIP  214 (253)
T ss_pred             --------------CCCccchHHHHHHHHHHHHHHHHHHhHhCeEEEEeecCCCCCccccc-ch----HHHHHHHh-cCC
Confidence                          0112469999999999999988764   7999999999997664221 11    11111111 111


Q ss_pred             cccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEec
Q 020104          225 YGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSS  260 (331)
Q Consensus       225 ~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~  260 (331)
                      .     ..+...+|+++++++++....  ..| .+.+.+
T Consensus       215 ~-----~r~~~p~~va~~~~~L~s~~~~~~tG~~i~vdg  248 (253)
T PRK05867        215 L-----GRLGRPEELAGLYLYLASEASSYMTGSDIVIDG  248 (253)
T ss_pred             C-----CCCcCHHHHHHHHHHHcCcccCCcCCCeEEECC
Confidence            2     257789999999999997543  233 445544

>PRK12742 oxidoreductase; Provisional

Probab=99.81  E-value=2.3e-18  Score=144.51  Aligned_cols=206  Identities=14%  Similarity=0.075  Sum_probs=140.6

Q ss_pred             CCC-CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH
Q 020104            1 MEE-GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         1 M~~-~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      |+. ++|+||||||+|+||+++++.|+++|++|+++.|+..    +.   .+.+...    .++.++.+|+.|.+++.+.
T Consensus         1 m~~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~----~~---~~~l~~~----~~~~~~~~D~~~~~~~~~~   69 (237)
T PRK12742          1 MGAFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSK----DA---AERLAQE----TGATAVQTDSADRDAVIDV   69 (237)
T ss_pred             CCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCH----HH---HHHHHHH----hCCeEEecCCCCHHHHHHH
Confidence            543 3578999999999999999999999999988776431    11   1111110    1356788999998888777


Q ss_pred             hc---CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhc-CCccEEEEecccceeecCCCCCCcccC
Q 020104           80 IA---GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKS-GTVKRVVYTSSNAAVFYNDKDVDMMDE  149 (331)
Q Consensus        80 ~~---~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~~~~~E  149 (331)
                      ++   ++|++||+|+.....      ..++ +..+++|+.++..++..+... ....++|++||.....      .+   
T Consensus        70 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~------~~---  139 (237)
T PRK12742         70 VRKSGALDILVVNAGIAVFGDALELDADDI-DRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGDR------MP---  139 (237)
T ss_pred             HHHhCCCcEEEECCCCCCCCCcccCCHHHH-HHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEecccccc------CC---
Confidence            64   489999999864311      1123 478999999999988766654 1136999999964311      00   


Q ss_pred             CCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccc
Q 020104          150 TFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYG  226 (331)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (331)
                                  .++...|+.+|.+.+.+++.++.+.   ++++++++||.+..+..... .   . ....... ...+ 
T Consensus       140 ------------~~~~~~Y~~sKaa~~~~~~~la~~~~~~gi~v~~v~Pg~~~t~~~~~~-~---~-~~~~~~~-~~~~-  200 (237)
T PRK12742        140 ------------VAGMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPAN-G---P-MKDMMHS-FMAI-  200 (237)
T ss_pred             ------------CCCCcchHHhHHHHHHHHHHHHHHHhhhCeEEEEEecCcccCCccccc-c---H-HHHHHHh-cCCC-
Confidence                        1224479999999999999877653   79999999999977642211 0   0 1111111 1111 


Q ss_pred             cCCCccceeHHHHHHHHHHhhcCC
Q 020104          227 FLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       227 ~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                          ..+...+|+++++.+++...
T Consensus       201 ----~~~~~p~~~a~~~~~l~s~~  220 (237)
T PRK12742        201 ----KRHGRPEEVAGMVAWLAGPE  220 (237)
T ss_pred             ----CCCCCHHHHHHHHHHHcCcc
Confidence                15678999999999998754

>PRK07102 short chain dehydrogenase; Provisional

Probab=99.81  E-value=7.9e-19  Score=147.94  Aligned_cols=196  Identities=16%  Similarity=0.145  Sum_probs=140.5

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      ||+|+||||+|+||.+++++|+++|++|++++|+.     +..... +.+...  ...++.++++|+.|.+++.++++  
T Consensus         1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~-----~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~   73 (243)
T PRK07102          1 MKKILIIGATSDIARACARRYAAAGARLYLAARDV-----ERLERLADDLRAR--GAVAVSTHELDILDTASHAAFLDSL   73 (243)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCH-----HHHHHHHHHHHHh--cCCeEEEEecCCCChHHHHHHHHHH
Confidence            46899999999999999999999999999999987     222211 111111  12468899999999998888765  


Q ss_pred             --CccEEEEecccCCCC---CCChh--hHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCCcccCC
Q 020104           82 --GCTGVLHVATPVDFE---DKEPE--EVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVDMMDET  150 (331)
Q Consensus        82 --~~d~Vih~a~~~~~~---~~~~~--~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~E~  150 (331)
                        ++|+|||+++.....   ..+..  ...+++|+.++.++++++..    .+ .+++|++||.....  ..        
T Consensus        74 ~~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~--~~--------  142 (243)
T PRK07102         74 PALPDIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARG-SGTIVGISSVAGDR--GR--------  142 (243)
T ss_pred             hhcCCEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC-CCEEEEEecccccC--CC--------
Confidence              479999999854321   11111  25788999999999887764    34 57999999965331  10        


Q ss_pred             CCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCccccc
Q 020104          151 FWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGF  227 (331)
Q Consensus       151 ~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (331)
                                  +....|+.+|...+.+.+.++.+   .++++++++|+.++++....               ..  .+ 
T Consensus       143 ------------~~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~v~t~~~~~---------------~~--~~-  192 (243)
T PRK07102        143 ------------ASNYVYGSAKAALTAFLSGLRNRLFKSGVHVLTVKPGFVRTPMTAG---------------LK--LP-  192 (243)
T ss_pred             ------------CCCcccHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccChhhhc---------------cC--CC-
Confidence                        11236999999999999887654   47999999999998763111               00  00 


Q ss_pred             CCCccceeHHHHHHHHHHhhcCC
Q 020104          228 LLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       228 ~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                        ....+..+|+++.++.++.++
T Consensus       193 --~~~~~~~~~~a~~i~~~~~~~  213 (243)
T PRK07102        193 --GPLTAQPEEVAKDIFRAIEKG  213 (243)
T ss_pred             --ccccCCHHHHHHHHHHHHhCC
Confidence              013567999999999998865

>PRK05866 short chain dehydrogenase; Provisional

Probab=99.81  E-value=1.8e-18  Score=149.43  Aligned_cols=198  Identities=18%  Similarity=0.176  Sum_probs=140.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+++|+||||+|+||.++++.|+++|++|++++|+.     +..+.+ +.+..   ....+.++.+|+.|.+++.++++ 
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~-----~~l~~~~~~l~~---~~~~~~~~~~Dl~d~~~v~~~~~~  110 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGATVVAVARRE-----DLLDAVADRITR---AGGDAMAVPCDLSDLDAVDALVAD  110 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHH
Confidence            347899999999999999999999999999999986     222221 11111   12357789999999998888775 


Q ss_pred             ------CccEEEEecccCCCCC-----CC--hhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCC
Q 020104           82 ------GCTGVLHVATPVDFED-----KE--PEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~~-----~~--~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                            ++|+|||+||......     .+  ..+..+++|+.++..+++++.    +.+ ..++|++||.+++...    
T Consensus       111 ~~~~~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~~----  185 (293)
T PRK05866        111 VEKRIGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERG-DGHIINVATWGVLSEA----  185 (293)
T ss_pred             HHHHcCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcEEEEECChhhcCCC----
Confidence                  6899999998653211     01  113678899999887777654    455 5799999997654200    


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                                       .+....|+.+|.+.+.+++.++.+.   +++++.++||.+-.+.....               
T Consensus       186 -----------------~p~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~pg~v~T~~~~~~---------------  233 (293)
T PRK05866        186 -----------------SPLFSVYNASKAALSAVSRVIETEWGDRGVHSTTLYYPLVATPMIAPT---------------  233 (293)
T ss_pred             -----------------CCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEEcCcccCcccccc---------------
Confidence                             0113479999999999988887654   79999999998766532110               


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      .. .   .....+..+++|+.++.++.+.
T Consensus       234 ~~-~---~~~~~~~pe~vA~~~~~~~~~~  258 (293)
T PRK05866        234 KA-Y---DGLPALTADEAAEWMVTAARTR  258 (293)
T ss_pred             cc-c---cCCCCCCHHHHHHHHHHHHhcC
Confidence            00 0   0013468899999999999864

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.81  E-value=4.4e-18  Score=144.52  Aligned_cols=224  Identities=16%  Similarity=0.092  Sum_probs=146.9

Q ss_pred             CCCCCceEEEecCcc--hhHHHHHHHHHHCCCeEEEEecCCCCccc----CCccccccccCCCCCCCcEEEEeCCCCCCc
Q 020104            1 MEEGKGRVCVTGGTG--FIASWLIMRLLDHGYSVTTTVRSELDPEH----RNSKDLSFLKNLPGASERLRIFHADLSHPD   74 (331)
Q Consensus         1 M~~~~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~   74 (331)
                      |..++++||||||||  .||.+++++|+++|++|++++|++.....    ...........+.....++.++.+|+.+.+
T Consensus         1 ~~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~   80 (256)
T PRK12748          1 LPLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPY   80 (256)
T ss_pred             CCCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence            566678999999996  69999999999999999999987310000    000110000111111246889999999998


Q ss_pred             cHHHHhc-------CccEEEEecccCCCC---CCCh--hhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceee
Q 020104           75 GFDAAIA-------GCTGVLHVATPVDFE---DKEP--EEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVF  138 (331)
Q Consensus        75 ~~~~~~~-------~~d~Vih~a~~~~~~---~~~~--~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~  138 (331)
                      ++..+++       ++|+|||+|+.....   ..++  .+..+++|+.++..+++++...    + ..++|++||...+.
T Consensus        81 ~~~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~ss~~~~~  159 (256)
T PRK12748         81 APNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKA-GGRIINLTSGQSLG  159 (256)
T ss_pred             HHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcC-CeEEEEECCccccC
Confidence            8777654       489999999864321   1111  1367889999999999988643    2 46999999976553


Q ss_pred             cCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHH
Q 020104          139 YNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSL  215 (331)
Q Consensus       139 ~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~  215 (331)
                      ..                      +....|+.+|.+.+.+++.++.+   .+++++.++||.+..+....    .   ..
T Consensus       160 ~~----------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~~~t~~~~~----~---~~  210 (256)
T PRK12748        160 PM----------------------PDELAYAATKGAIEAFTKSLAPELAEKGITVNAVNPGPTDTGWITE----E---LK  210 (256)
T ss_pred             CC----------------------CCchHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEeCcccCCCCCh----h---HH
Confidence            10                      11346999999999998887765   37999999999887653221    0   11


Q ss_pred             HHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC--C-CceEEEec
Q 020104          216 ALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--A-KGRYICSS  260 (331)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~-~~~~~~~~  260 (331)
                      ...... ...     ..+...+|+++++.+++....  . +.++++.+
T Consensus       211 ~~~~~~-~~~-----~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~d~  252 (256)
T PRK12748        211 HHLVPK-FPQ-----GRVGEPVDAARLIAFLVSEEAKWITGQVIHSEG  252 (256)
T ss_pred             Hhhhcc-CCC-----CCCcCHHHHHHHHHHHhCcccccccCCEEEecC
Confidence            111111 010     134567999999998887533  2 33556644

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=99.81  E-value=3.1e-18  Score=144.98  Aligned_cols=207  Identities=15%  Similarity=0.149  Sum_probs=142.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|++|||||+|.||++++++|+++|++|++++|+.     . ......+.+.   ..++.++.+|+.|.+++.++++  
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~-----~-~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~   77 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE-----A-PETQAQVEAL---GRKFHFITADLIQQKDIDSIVSQA   77 (251)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch-----H-HHHHHHHHHc---CCeEEEEEeCCCCHHHHHHHHHHH
Confidence            457899999999999999999999999999988864     1 1111112111   2467889999999998887764  


Q ss_pred             -----CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCCc
Q 020104           82 -----GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                           ++|++||+||....      ..+++ +..+++|+.++..+.+++..    .+.-.++|++||...+...      
T Consensus        78 ~~~~g~iD~lv~~ag~~~~~~~~~~~~~~~-~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~------  150 (251)
T PRK12481         78 VEVMGHIDILINNAGIIRRQDLLEFGNKDW-DDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQGG------  150 (251)
T ss_pred             HHHcCCCCEEEECCCcCCCCCcccCCHHHH-HHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCCC------
Confidence                 58999999986432      11233 37788999998888877653    2212589999997765311      


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE  223 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  223 (331)
                                      .....|+.+|.+.+.+++.++.+   ++++++.++||.+-.+.... .... ......... ..
T Consensus       151 ----------------~~~~~Y~asK~a~~~l~~~la~e~~~~girvn~v~PG~v~t~~~~~-~~~~-~~~~~~~~~-~~  211 (251)
T PRK12481        151 ----------------IRVPSYTASKSAVMGLTRALATELSQYNINVNAIAPGYMATDNTAA-LRAD-TARNEAILE-RI  211 (251)
T ss_pred             ----------------CCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCCccCchhh-cccC-hHHHHHHHh-cC
Confidence                            11236999999999999988765   48999999999987653211 0000 000111111 11


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      ..     ..+...+|+++++.+++...
T Consensus       212 p~-----~~~~~peeva~~~~~L~s~~  233 (251)
T PRK12481        212 PA-----SRWGTPDDLAGPAIFLSSSA  233 (251)
T ss_pred             CC-----CCCcCHHHHHHHHHHHhCcc
Confidence            11     25778999999999999753

>PRK08226 short chain dehydrogenase; Provisional

Probab=99.81  E-value=2e-18  Score=147.23  Aligned_cols=211  Identities=19%  Similarity=0.153  Sum_probs=143.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+++++||||+|+||++++++|+++|++|++++|+.     ...+....+..   ...++.++.+|+.+.+++.++++  
T Consensus         5 ~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~-----~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~v~~~~~~~   76 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVFARHGANLILLDISP-----EIEKLADELCG---RGHRCTAVVADVRDPASVAAAIKRA   76 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCH-----HHHHHHHHHHH---hCCceEEEECCCCCHHHHHHHHHHH
Confidence            357899999999999999999999999999999876     21111222211   12457889999999988887764  


Q ss_pred             -----CccEEEEecccCCCC---CC--ChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCCcc
Q 020104           82 -----GCTGVLHVATPVDFE---DK--EPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~---~~--~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                           ++|+|||+|+.....   ..  +..++.+++|+.++..+++++..    .+ ..++|++||.......       
T Consensus        77 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~isS~~~~~~~-------  148 (263)
T PRK08226         77 KEKEGRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARK-DGRIVMMSSVTGDMVA-------  148 (263)
T ss_pred             HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CcEEEEECcHHhcccC-------
Confidence                 579999999864321   11  11235788999999998888653    33 4689999996432100       


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCC----CCccHHHHHHHHhC
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPK----FAGSVRSSLALILG  220 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~----~~~~~~~~~~~~~~  220 (331)
                                    .+....|+.+|...+.+++.++.+.   +++++.++||.+.++.....    .+............
T Consensus       149 --------------~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~  214 (263)
T PRK08226        149 --------------DPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAK  214 (263)
T ss_pred             --------------CCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccCHHHHhhhhhccCCCcHHHHHHHhc
Confidence                          0113469999999999999888764   79999999999988732110    00111111111111


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      . ..+     ..+...+|+++++.+++...
T Consensus       215 ~-~p~-----~~~~~~~~va~~~~~l~~~~  238 (263)
T PRK08226        215 A-IPL-----RRLADPLEVGELAAFLASDE  238 (263)
T ss_pred             c-CCC-----CCCCCHHHHHHHHHHHcCch
Confidence            1 111     25678999999999988643

>PRK07904 short chain dehydrogenase; Provisional

Probab=99.81  E-value=3.1e-18  Score=145.02  Aligned_cols=195  Identities=14%  Similarity=0.133  Sum_probs=136.1

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccCC-ccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRN-SKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      .++|+||||+|.||++++++|+++| ++|++++|+.+     . .+. .+.+...  ...++.++.+|+.|.+++.++++
T Consensus         8 ~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~-----~~~~~~~~~l~~~--~~~~v~~~~~D~~~~~~~~~~~~   80 (253)
T PRK07904          8 PQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDD-----PRRDAAVAQMKAA--GASSVEVIDFDALDTDSHPKVID   80 (253)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcc-----hhHHHHHHHHHhc--CCCceEEEEecCCChHHHHHHHH
Confidence            4689999999999999999999995 99999999872     2 111 1112221  11368899999999887665543


Q ss_pred             ------CccEEEEecccCCCCCC---Chh--hHHHHHHHHHHHH----HHHHHHhcCCccEEEEecccceeecCCCCCCc
Q 020104           82 ------GCTGVLHVATPVDFEDK---EPE--EVITQRAINGTLG----ILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~~~---~~~--~~~~~~n~~~~~~----l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                            ++|++||++|.......   +..  .+.+++|+.++..    +++++++.+ ..++|++||...+.  .     
T Consensus        81 ~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~-~~~iv~isS~~g~~--~-----  152 (253)
T PRK07904         81 AAFAGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQG-FGQIIAMSSVAGER--V-----  152 (253)
T ss_pred             HHHhcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcC-CceEEEEechhhcC--C-----
Confidence                  69999999986532111   111  1358899888765    566677766 68999999975431  1     


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHH---HcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAE---EHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE  223 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~---~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  223 (331)
                                     .++...|+.+|.+...+.+.+..   .+++++++++||.+..+....              ....
T Consensus       153 ---------------~~~~~~Y~~sKaa~~~~~~~l~~el~~~~i~v~~v~Pg~v~t~~~~~--------------~~~~  203 (253)
T PRK07904        153 ---------------RRSNFVYGSTKAGLDGFYLGLGEALREYGVRVLVVRPGQVRTRMSAH--------------AKEA  203 (253)
T ss_pred             ---------------CCCCcchHHHHHHHHHHHHHHHHHHhhcCCEEEEEeeCceecchhcc--------------CCCC
Confidence                           01134699999998877666543   358999999999998752110              0000


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                             ...+..+|+|+.++..+.++
T Consensus       204 -------~~~~~~~~~A~~i~~~~~~~  223 (253)
T PRK07904        204 -------PLTVDKEDVAKLAVTAVAKG  223 (253)
T ss_pred             -------CCCCCHHHHHHHHHHHHHcC
Confidence                   12468899999999999765

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=99.81  E-value=4.1e-18  Score=145.46  Aligned_cols=209  Identities=13%  Similarity=0.106  Sum_probs=143.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+++++||||+|.||.+++++|+++|++|+++.|+.     +..+.. ..+..   ...++.++.+|+.|.+++.+++. 
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~-----~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~   80 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQ-----ELVDKGLAAYRE---LGIEAHGYVCDVTDEDGVQAMVSQ   80 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH-----HHHHHHHHHHHh---cCCceEEEEcCCCCHHHHHHHHHH
Confidence            357899999999999999999999999999998876     222211 11111   12368889999999998887764 


Q ss_pred             ------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|+|||+||.....      .++. ...+++|+.++..+.+++..    .+ ..++|++||..... +     
T Consensus        81 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~-~-----  152 (265)
T PRK07097         81 IEKEVGVIDILVNNAGIIKRIPMLEMSAEDF-RQVIDIDLNAPFIVSKAVIPSMIKKG-HGKIINICSMMSEL-G-----  152 (265)
T ss_pred             HHHhCCCCCEEEECCCCCCCCCcccCCHHHH-HHHHHhhhHHHHHHHHHHHHHHHhcC-CcEEEEEcCccccC-C-----
Confidence                  489999999865421      1123 36788999998877776653    34 57999999964331 1     


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCC---c-cHHHHHHHH
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFA---G-SVRSSLALI  218 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~---~-~~~~~~~~~  218 (331)
                                      .++...|+.+|.+.+.+++.++.+.   +++++.++||.+.++.......   . ....+....
T Consensus       153 ----------------~~~~~~Y~~sKaal~~l~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~  216 (265)
T PRK07097        153 ----------------RETVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRELQADGSRHPFDQFI  216 (265)
T ss_pred             ----------------CCCCccHHHHHHHHHHHHHHHHHHhhhcCceEEEEEeccccccchhhhhhccccccchhHHHHH
Confidence                            0123479999999999999988765   8999999999998874322100   0 000001111


Q ss_pred             hCCCcccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          219 LGNREEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       219 ~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      ... ...     ..+...+|++..++.++...
T Consensus       217 ~~~-~~~-----~~~~~~~dva~~~~~l~~~~  242 (265)
T PRK07097        217 IAK-TPA-----ARWGDPEDLAGPAVFLASDA  242 (265)
T ss_pred             Hhc-CCc-----cCCcCHHHHHHHHHHHhCcc
Confidence            110 011     25678899999999999763

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=99.80  E-value=3.1e-18  Score=146.31  Aligned_cols=203  Identities=17%  Similarity=0.164  Sum_probs=140.9

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      ..+|++|||||+|+||.++++.|+++|++|++++|+..     ...           ..++.++.+|+.|++++.++++ 
T Consensus         7 l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~-----~~~-----------~~~~~~~~~D~~~~~~~~~~~~~   70 (266)
T PRK06171          7 LQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGG-----DGQ-----------HENYQFVPTDVSSAEEVNHTVAE   70 (266)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcc-----ccc-----------cCceEEEEccCCCHHHHHHHHHH
Confidence            34578999999999999999999999999999998872     110           1357889999999988887664 


Q ss_pred             ------CccEEEEecccCCC---------------CCCChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccce
Q 020104           82 ------GCTGVLHVATPVDF---------------EDKEPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAA  136 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~---------------~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~  136 (331)
                            ++|+|||+|+....               ..+++ +..+++|+.++..+++++...    + ..++|++||...
T Consensus        71 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~~-~g~iv~isS~~~  148 (266)
T PRK06171         71 IIEKFGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAF-DKMFNINQKGVFLMSQAVARQMVKQH-DGVIVNMSSEAG  148 (266)
T ss_pred             HHHHcCCCCEEEECCcccCCccccccccccccccCCHHHH-HHHHhhhchhHHHHHHHHHHHHHhcC-CcEEEEEccccc
Confidence                  58999999985321               11122 367889999999999888743    2 358999999765


Q ss_pred             eecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCC-CCCCCc---
Q 020104          137 VFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFI-CPKFAG---  209 (331)
Q Consensus       137 ~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~-~~~~~~---  209 (331)
                      +...                      +....|+.+|.+.+.+++.++.+.   ++++++++||.+..... ......   
T Consensus       149 ~~~~----------------------~~~~~Y~~sK~a~~~l~~~la~e~~~~gi~v~~v~pG~~~~t~~~~~~~~~~~~  206 (266)
T PRK06171        149 LEGS----------------------EGQSCYAATKAALNSFTRSWAKELGKHNIRVVGVAPGILEATGLRTPEYEEALA  206 (266)
T ss_pred             cCCC----------------------CCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeccccccCCCcChhhhhhhc
Confidence            4211                      113479999999999999887654   79999999998852211 100000   


Q ss_pred             -----cHHHHHHHHhC-CCcccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          210 -----SVRSSLALILG-NREEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       210 -----~~~~~~~~~~~-~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                           ........... ....+     ..+...+|++.++.+++...
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~p~-----~r~~~~~eva~~~~fl~s~~  248 (266)
T PRK06171        207 YTRGITVEQLRAGYTKTSTIPL-----GRSGKLSEVADLVCYLLSDR  248 (266)
T ss_pred             cccCCCHHHHHhhhcccccccC-----CCCCCHHHhhhheeeeeccc
Confidence                 00011111110 01111     25678899999999998754

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=99.80  E-value=8.2e-18  Score=142.57  Aligned_cols=207  Identities=17%  Similarity=0.161  Sum_probs=144.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+++++||||+|.||++++++|++.|++|++++|+.      ..+..+.+...   ...+..+.+|+.|.+++.++++  
T Consensus         9 ~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~------~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~   79 (253)
T PRK08993          9 EGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVE------PTETIEQVTAL---GRRFLSLTADLRKIDGIPALLERA   79 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcc------hHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHH
Confidence            457899999999999999999999999999887654      11222222221   2457889999999988887764  


Q ss_pred             -----CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCCCCCCc
Q 020104           82 -----GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                           ++|++||+|+.....      ..++ +..+++|+.++..+++++...    +.-.++|++||...+...      
T Consensus        80 ~~~~~~~D~li~~Ag~~~~~~~~~~~~~~~-~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~------  152 (253)
T PRK08993         80 VAEFGHIDILVNNAGLIRREDAIEFSEKDW-DDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGG------  152 (253)
T ss_pred             HHHhCCCCEEEECCCCCCCCCcccCCHHHH-HHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccCC------
Confidence                 589999999864321      1233 378999999999888877542    212589999997765311      


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE  223 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  223 (331)
                                      +....|+.+|.+.+.+.+.++.+   ++++++.++||.+..+.... .... ......... ..
T Consensus       153 ----------------~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pG~v~T~~~~~-~~~~-~~~~~~~~~-~~  213 (253)
T PRK08993        153 ----------------IRVPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQ-LRAD-EQRSAEILD-RI  213 (253)
T ss_pred             ----------------CCCcchHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccCcchhh-hccc-hHHHHHHHh-cC
Confidence                            11236999999999999988776   47999999999997763221 1000 000111111 11


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      ..     ..+...+|+++++++++...
T Consensus       214 p~-----~r~~~p~eva~~~~~l~s~~  235 (253)
T PRK08993        214 PA-----GRWGLPSDLMGPVVFLASSA  235 (253)
T ss_pred             CC-----CCCcCHHHHHHHHHHHhCcc
Confidence            11     25778899999999999764

>PRK09072 short chain dehydrogenase; Provisional

Probab=99.80  E-value=1.9e-18  Score=147.41  Aligned_cols=205  Identities=22%  Similarity=0.229  Sum_probs=143.5

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |..++++++||||+|+||.+++++|+++|++|++++|+.     .....+..  ++ ....++.++.+|+.|.+++.+++
T Consensus         1 m~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~~--~~-~~~~~~~~~~~D~~d~~~~~~~~   72 (263)
T PRK09072          1 MDLKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNA-----EKLEALAA--RL-PYPGRHRWVVADLTSEAGREAVL   72 (263)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHH--HH-hcCCceEEEEccCCCHHHHHHHH
Confidence            666678999999999999999999999999999999986     22222211  11 11247889999999998877765


Q ss_pred             c------CccEEEEecccCCCC---CC--ChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCC
Q 020104           81 A------GCTGVLHVATPVDFE---DK--EPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        81 ~------~~d~Vih~a~~~~~~---~~--~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                      +      ++|+|||+|+.....   ..  +.....+++|+.++.++++.+..    .+ ..++|++||..... +.    
T Consensus        73 ~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~-~~----  146 (263)
T PRK09072         73 ARAREMGGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQP-SAMVVNVGSTFGSI-GY----  146 (263)
T ss_pred             HHHHhcCCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CCEEEEecChhhCc-CC----
Confidence            4      589999999864421   11  11236788999999999888764    23 46899998865432 10    


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                       +....|+.+|.+.+.+++.++.+.   +++++.+.|+.+.++.....        ....   .
T Consensus       147 -----------------~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~~~t~~~~~~--------~~~~---~  198 (263)
T PRK09072        147 -----------------PGYASYCASKFALRGFSEALRRELADTGVRVLYLAPRATRTAMNSEA--------VQAL---N  198 (263)
T ss_pred             -----------------CCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccccchhhh--------cccc---c
Confidence                             113469999999988888877653   79999999998865531110        0000   0


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD  251 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~  251 (331)
                      ..+.    ..+..++|+|++++.++++..
T Consensus       199 ~~~~----~~~~~~~~va~~i~~~~~~~~  223 (263)
T PRK09072        199 RALG----NAMDDPEDVAAAVLQAIEKER  223 (263)
T ss_pred             cccc----CCCCCHHHHHHHHHHHHhCCC
Confidence            0011    146788999999999998763

>PRK06198 short chain dehydrogenase; Provisional

Probab=99.80  E-value=3.9e-18  Score=145.19  Aligned_cols=221  Identities=17%  Similarity=0.135  Sum_probs=149.0

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCe-EEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYS-VTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .|+|+||||+|+||++++++|+++|++ |++++|+.     +.... ...+..   ....+.++.+|+.+++++.++++ 
T Consensus         6 ~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~-----~~~~~~~~~l~~---~~~~~~~~~~D~~~~~~~~~~~~~   77 (260)
T PRK06198          6 GKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNA-----EKGEAQAAELEA---LGAKAVFVQADLSDVEDCRRVVAA   77 (260)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCH-----HHHHHHHHHHHh---cCCeEEEEEccCCCHHHHHHHHHH
Confidence            478999999999999999999999998 99999876     22221 111111   12457788999999988877764 


Q ss_pred             ------CccEEEEecccCCCC---CCCh--hhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCCCCCCc
Q 020104           82 ------GCTGVLHVATPVDFE---DKEP--EEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~---~~~~--~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                            ++|+|||+|+.....   ..+.  .+..+++|+.++.++++++.+.    +...++|++||...++..      
T Consensus        78 ~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~------  151 (260)
T PRK06198         78 ADEAFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGGQ------  151 (260)
T ss_pred             HHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCC------
Confidence                  589999999864311   1111  1367899999999998877542    212579999998766311      


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCC---CCCccHHHHHHHHhC
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICP---KFAGSVRSSLALILG  220 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~---~~~~~~~~~~~~~~~  220 (331)
                                      +....|+.+|...|.+++.++.++   +++++.++|+.++++....   ........+......
T Consensus       152 ----------------~~~~~Y~~sK~a~~~~~~~~a~e~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~  215 (260)
T PRK06198        152 ----------------PFLAAYCASKGALATLTRNAAYALLRNRIRVNGLNIGWMATEGEDRIQREFHGAPDDWLEKAAA  215 (260)
T ss_pred             ----------------CCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEeeccccCcchhhhhhhccCCChHHHHHHhc
Confidence                            113479999999999999887654   6899999999999875321   000011111111111


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                       ...+     ..+++.+|+++++.+++....   .+..+.+.++
T Consensus       216 -~~~~-----~~~~~~~~~a~~~~~l~~~~~~~~~G~~~~~~~~  253 (260)
T PRK06198        216 -TQPF-----GRLLDPDEVARAVAFLLSDESGLMTGSVIDFDQS  253 (260)
T ss_pred             -cCCc-----cCCcCHHHHHHHHHHHcChhhCCccCceEeECCc
Confidence             1111     257899999999999986543   2345555543

>PRK07576 short chain dehydrogenase; Provisional

Probab=99.80  E-value=4.8e-18  Score=144.90  Aligned_cols=209  Identities=17%  Similarity=0.122  Sum_probs=141.3

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      ++++||||||+|+||++++++|++.|++|++++|+.     +..... ..+..   ...++.++.+|+.|.+++.++++ 
T Consensus         8 ~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~i~~~~~~   79 (264)
T PRK07576          8 AGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQ-----EKVDAAVAQLQQ---AGPEGLGVSADVRDYAAVEAAFAQ   79 (264)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHH---hCCceEEEECCCCCHHHHHHHHHH
Confidence            346899999999999999999999999999999986     221111 11111   12356788999999988887764 


Q ss_pred             ------CccEEEEecccCCCC---C--CChhhHHHHHHHHHHHHHHHHHHhc--CCccEEEEecccceeecCCCCCCccc
Q 020104           82 ------GCTGVLHVATPVDFE---D--KEPEEVITQRAINGTLGILKSCLKS--GTVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~---~--~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                            ++|+|||+|+.....   .  .+.....+++|+.++.++++++...  ....++|++||...+. +        
T Consensus        80 ~~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~~-~--------  150 (264)
T PRK07576         80 IADEFGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAFV-P--------  150 (264)
T ss_pred             HHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhcc-C--------
Confidence                  479999999743211   1  1112367889999999999887653  1125999999965432 0        


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCC-CCCCccHHHHHHHHhCCCcc
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFIC-PKFAGSVRSSLALILGNREE  224 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~-~~~~~~~~~~~~~~~~~~~~  224 (331)
                                   .+....|+.+|.+.+.+++.++.+.   +++++.++|+.+.+.... ...+..  ....... ....
T Consensus       151 -------------~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~pg~~~~t~~~~~~~~~~--~~~~~~~-~~~~  214 (264)
T PRK07576        151 -------------MPMQAHVCAAKAGVDMLTRTLALEWGPEGIRVNSIVPGPIAGTEGMARLAPSP--ELQAAVA-QSVP  214 (264)
T ss_pred             -------------CCCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccccCcHHHhhcccCH--HHHHHHH-hcCC
Confidence                         0123479999999999999887653   789999999988753211 100100  0001111 1111


Q ss_pred             cccCCCccceeHHHHHHHHHHhhcCC
Q 020104          225 YGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       225 ~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      +     ..+...+|+++++++++..+
T Consensus       215 ~-----~~~~~~~dva~~~~~l~~~~  235 (264)
T PRK07576        215 L-----KRNGTKQDIANAALFLASDM  235 (264)
T ss_pred             C-----CCCCCHHHHHHHHHHHcChh
Confidence            1     25678999999999999754

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=99.80  E-value=5.4e-18  Score=140.09  Aligned_cols=204  Identities=21%  Similarity=0.261  Sum_probs=145.2

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccC-CCC-CCCcEEEEeCCCCCCccHHHHh
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKN-LPG-ASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      .++++++|||||+.||..+++.|+++|++|+++.|+.        +++..+.. +.. ..-.+.++.+|+.+++++..+.
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~--------~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~   75 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARRE--------DKLEALAKELEDKTGVEVEVIPADLSDPEALERLE   75 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcH--------HHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHH
Confidence            3467899999999999999999999999999999998        33333321 111 1235788999999999888776


Q ss_pred             c-------CccEEEEecccCCCC---CC--ChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCCC
Q 020104           81 A-------GCTGVLHVATPVDFE---DK--EPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        81 ~-------~~d~Vih~a~~~~~~---~~--~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                      .       .+|++||+||...+.   ..  +...+++++|+.++..|..+.    .+.+ ..++|+++|...+...    
T Consensus        76 ~~l~~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~-~G~IiNI~S~ag~~p~----  150 (265)
T COG0300          76 DELKERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERG-AGHIINIGSAAGLIPT----  150 (265)
T ss_pred             HHHHhcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEechhhcCCC----
Confidence            3       599999999865532   11  233578999988866665544    4555 5799999998766311    


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                                        +..+.|+.||...-.+.+.+..+.   |++++.+-||.+.......             .+.
T Consensus       151 ------------------p~~avY~ATKa~v~~fSeaL~~EL~~~gV~V~~v~PG~~~T~f~~~-------------~~~  199 (265)
T COG0300         151 ------------------PYMAVYSATKAFVLSFSEALREELKGTGVKVTAVCPGPTRTEFFDA-------------KGS  199 (265)
T ss_pred             ------------------cchHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEecCccccccccc-------------ccc
Confidence                              224579999988777777666554   7999999999888765321             000


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCC
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPD  251 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~  251 (331)
                      . ........-++..+|+|++.+..+.+..
T Consensus       200 ~-~~~~~~~~~~~~~~~va~~~~~~l~~~k  228 (265)
T COG0300         200 D-VYLLSPGELVLSPEDVAEAALKALEKGK  228 (265)
T ss_pred             c-cccccchhhccCHHHHHHHHHHHHhcCC
Confidence            0 0000001367899999999999998753

>PRK07677 short chain dehydrogenase; Provisional

Probab=99.80  E-value=8.2e-18  Score=142.52  Aligned_cols=208  Identities=14%  Similarity=0.123  Sum_probs=141.0

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccc-cccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLS-FLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      +|+++||||+|.||+++++.|++.|++|++++|+.     ...+.+. .+.+   ...++.++.+|+.|++++.++++  
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~   72 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTK-----EKLEEAKLEIEQ---FPGQVLTVQMDVRNPEDVQKMVEQI   72 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHh---cCCcEEEEEecCCCHHHHHHHHHHH
Confidence            36899999999999999999999999999999987     2222221 1111   12468899999999988877653  


Q ss_pred             -----CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCCc
Q 020104           82 -----GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                           ++|+|||+|+....      ..+++ +..+++|+.++.++++++.+    .+...++|++||...+.  ..    
T Consensus        73 ~~~~~~id~lI~~ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~--~~----  145 (252)
T PRK07677         73 DEKFGRIDALINNAAGNFICPAEDLSVNGW-NSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWD--AG----  145 (252)
T ss_pred             HHHhCCccEEEECCCCCCCCCcccCCHHHH-HHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhcc--CC----
Confidence                 58999999984321      11122 36899999999999998843    22135899999865331  10    


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH----cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE----HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~----~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                      .....|+.+|.+.+.+.+.++.+    +|++++.++||.+.+.......... ......... .
T Consensus       146 ----------------~~~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~~~~~~~~~~~~-~~~~~~~~~-~  207 (252)
T PRK07677        146 ----------------PGVIHSAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWES-EEAAKRTIQ-S  207 (252)
T ss_pred             ----------------CCCcchHHHHHHHHHHHHHHHHHhCcccCeEEEEEeecccccccccccccCC-HHHHHHHhc-c
Confidence                            11236999999999999887665    3799999999999854321111000 111111111 1


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      ..+     ..+...+|+++++.+++...
T Consensus       208 ~~~-----~~~~~~~~va~~~~~l~~~~  230 (252)
T PRK07677        208 VPL-----GRLGTPEEIAGLAYFLLSDE  230 (252)
T ss_pred             CCC-----CCCCCHHHHHHHHHHHcCcc
Confidence            112     15678899999999988753

>PRK07023 short chain dehydrogenase; Provisional

Probab=99.79  E-value=3.6e-18  Score=143.90  Aligned_cols=162  Identities=24%  Similarity=0.194  Sum_probs=119.4

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      ||+||||||||+||++++++|+++|++|++++|+..     ..  .  . .  ....++.++.+|+.|.+++.+++.   
T Consensus         1 ~~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~-----~~--~--~-~--~~~~~~~~~~~D~~~~~~~~~~~~~~~   68 (243)
T PRK07023          1 AVRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRH-----PS--L--A-A--AAGERLAEVELDLSDAAAAAAWLAGDL   68 (243)
T ss_pred             CceEEEecCCcchHHHHHHHHHhCCCEEEEEecCcc-----hh--h--h-h--ccCCeEEEEEeccCCHHHHHHHHHHHH
Confidence            358999999999999999999999999999999862     11  1  0 0  112468889999999988877432   


Q ss_pred             --------CccEEEEecccCCCC----CCC--hhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCC
Q 020104           82 --------GCTGVLHVATPVDFE----DKE--PEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        82 --------~~d~Vih~a~~~~~~----~~~--~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~  143 (331)
                              ++|++||+|+.....    ..+  .....+++|+.++..+.+.+.    +.+ .+++|++||...+..    
T Consensus        69 ~~~~~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~~----  143 (243)
T PRK07023         69 LAAFVDGASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAA-ERRILHISSGAARNA----  143 (243)
T ss_pred             HHHhccCCCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccC-CCEEEEEeChhhcCC----
Confidence                    478999999864321    111  123678899999766665554    333 569999999765521    


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH--cCCcEEEeccCceeCC
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE--HGLDLVTLIPSMVVGP  201 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~--~~~~~~ilRp~~v~G~  201 (331)
                                        .++...|+.+|...|.+++.++.+  .+++++.++|+.+-.+
T Consensus       144 ------------------~~~~~~Y~~sK~a~~~~~~~~~~~~~~~i~v~~v~pg~~~t~  185 (243)
T PRK07023        144 ------------------YAGWSVYCATKAALDHHARAVALDANRALRIVSLAPGVVDTG  185 (243)
T ss_pred             ------------------CCCchHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCccccH
Confidence                              122457999999999999988765  4799999999988654

>PRK06924 short chain dehydrogenase; Provisional

Probab=99.79  E-value=3.5e-18  Score=144.70  Aligned_cols=212  Identities=20%  Similarity=0.146  Sum_probs=137.2

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc-
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC-   83 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-   83 (331)
                      ||+||||||+|+||++++++|+++|++|++++|+..       +.+..+.+.  ...++.++.+|+.|.+++..+++.+ 
T Consensus         1 ~k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~-------~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~   71 (251)
T PRK06924          1 MRYVIITGTSQGLGEAIANQLLEKGTHVISISRTEN-------KELTKLAEQ--YNSNLTFHSLDLQDVHELETNFNEIL   71 (251)
T ss_pred             CcEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCch-------HHHHHHHhc--cCCceEEEEecCCCHHHHHHHHHHHH
Confidence            368999999999999999999999999999998761       111111111  1246888999999999888777521 


Q ss_pred             ----------cEEEEecccCCC-------CCCChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCC
Q 020104           84 ----------TGVLHVATPVDF-------EDKEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDK  142 (331)
Q Consensus        84 ----------d~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~  142 (331)
                                .++||+||....       ...+. ...+++|+.++..+++++    ++.+..+++|++||.....  . 
T Consensus        72 ~~~~~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~-~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~--~-  147 (251)
T PRK06924         72 SSIQEDNVSSIHLINNAGMVAPIKPIEKAESEEL-ITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAKN--P-  147 (251)
T ss_pred             HhcCcccCCceEEEEcceecccCcccccCCHHHH-HHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhcC--C-
Confidence                      278999985431       11122 256778888765555544    3332146899999965431  0 


Q ss_pred             CCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH-----cCCcEEEeccCceeCCCCCC---CCCccHHHH
Q 020104          143 DVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE-----HGLDLVTLIPSMVVGPFICP---KFAGSVRSS  214 (331)
Q Consensus       143 ~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~-----~~~~~~ilRp~~v~G~~~~~---~~~~~~~~~  214 (331)
                                         .++...|+.+|.+.+.+++.++.+     .+++++.++||.+-.+....   ........ 
T Consensus       148 -------------------~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~-  207 (251)
T PRK06924        148 -------------------YFGWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTNMQAQIRSSSKEDFTN-  207 (251)
T ss_pred             -------------------CCCcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccHhHHHHHhcCcccchH-
Confidence                               123457999999999999988765     36899999999886553110   00000000 


Q ss_pred             HHHHhCCCcccccCCCccceeHHHHHHHHHHhhcC-CCCCce
Q 020104          215 LALILGNREEYGFLLNTSMVHVDDVARAHIFLLEY-PDAKGR  255 (331)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~-~~~~~~  255 (331)
                      ....... ...     ..+...+|+|++++.++.. ....|.
T Consensus       208 ~~~~~~~-~~~-----~~~~~~~dva~~~~~l~~~~~~~~G~  243 (251)
T PRK06924        208 LDRFITL-KEE-----GKLLSPEYVAKALRNLLETEDFPNGE  243 (251)
T ss_pred             HHHHHHH-hhc-----CCcCCHHHHHHHHHHHHhcccCCCCC
Confidence            0000000 001     1468899999999999986 334443

>PRK05872 short chain dehydrogenase; Provisional

Probab=99.79  E-value=6.3e-18  Score=146.48  Aligned_cols=209  Identities=20%  Similarity=0.110  Sum_probs=143.3

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      ++++|||||+|.||.++++.|+++|++|++++|+.     ...+.+.  .++. ....+..+.+|+.|.+++.++++   
T Consensus         9 gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~-----~~l~~~~--~~l~-~~~~~~~~~~Dv~d~~~v~~~~~~~~   80 (296)
T PRK05872          9 GKVVVVTGAARGIGAELARRLHARGAKLALVDLEE-----AELAALA--AELG-GDDRVLTVVADVTDLAAMQAAAEEAV   80 (296)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHH--HHhc-CCCcEEEEEecCCCHHHHHHHHHHHH
Confidence            47899999999999999999999999999999987     2222111  1111 12346667799999988877653   


Q ss_pred             ----CccEEEEecccCCCC---CCC--hhhHHHHHHHHHHHHHHHHHHhc---CCccEEEEecccceeecCCCCCCcccC
Q 020104           82 ----GCTGVLHVATPVDFE---DKE--PEEVITQRAINGTLGILKSCLKS---GTVKRVVYTSSNAAVFYNDKDVDMMDE  149 (331)
Q Consensus        82 ----~~d~Vih~a~~~~~~---~~~--~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~E  149 (331)
                          ++|+|||+||.....   ..+  ..+..+++|+.++.++++++...   . ..++|++||...+...         
T Consensus        81 ~~~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~-~g~iv~isS~~~~~~~---------  150 (296)
T PRK05872         81 ERFGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIER-RGYVLQVSSLAAFAAA---------  150 (296)
T ss_pred             HHcCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCEEEEEeCHhhcCCC---------
Confidence                589999999964421   111  12367889999999999887642   2 3589999997665311         


Q ss_pred             CCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccc
Q 020104          150 TFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYG  226 (331)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (331)
                                   +....|+.+|...+.+++.++.+   .+++++++.|+.+..+........ ...........+... 
T Consensus       151 -------------~~~~~Y~asKaal~~~~~~l~~e~~~~gi~v~~v~Pg~v~T~~~~~~~~~-~~~~~~~~~~~~~p~-  215 (296)
T PRK05872        151 -------------PGMAAYCASKAGVEAFANALRLEVAHHGVTVGSAYLSWIDTDLVRDADAD-LPAFRELRARLPWPL-  215 (296)
T ss_pred             -------------CCchHHHHHHHHHHHHHHHHHHHHHHHCcEEEEEecCcccchhhhhcccc-chhHHHHHhhCCCcc-
Confidence                         11347999999999999887654   489999999999977642221111 011111111111111 


Q ss_pred             cCCCccceeHHHHHHHHHHhhcCC
Q 020104          227 FLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       227 ~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                          ..++..+|++++++.++.+.
T Consensus       216 ----~~~~~~~~va~~i~~~~~~~  235 (296)
T PRK05872        216 ----RRTTSVEKCAAAFVDGIERR  235 (296)
T ss_pred             ----cCCCCHHHHHHHHHHHHhcC
Confidence                25678999999999998765

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=99.79  E-value=3.1e-18  Score=146.10  Aligned_cols=209  Identities=18%  Similarity=0.172  Sum_probs=142.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      ++|+++||||+|+||++++++|+++|++|++++|+.     ...+.+..  +.   ..++.++.+|+.|.+++.++++  
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~~--~~---~~~~~~~~~D~~~~~~~~~~~~~~   74 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGARVAVLERSA-----EKLASLRQ--RF---GDHVLVVEGDVTSYADNQRAVDQT   74 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHH--Hh---CCcceEEEccCCCHHHHHHHHHHH
Confidence            457899999999999999999999999999999987     22222211  11   1357889999999988877654  


Q ss_pred             -----CccEEEEecccCCC--C--CCCh------hhHHHHHHHHHHHHHHHHHHhc--CCccEEEEecccceeecCCCCC
Q 020104           82 -----GCTGVLHVATPVDF--E--DKEP------EEVITQRAINGTLGILKSCLKS--GTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~--~--~~~~------~~~~~~~n~~~~~~l~~~~~~~--~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                           ++|++||+|+....  .  ...+      .+..+++|+.++..+++++...  ....++|++||...+...    
T Consensus        75 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~----  150 (263)
T PRK06200         75 VDAFGKLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFYPG----  150 (263)
T ss_pred             HHhcCCCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhcCCC----
Confidence                 58999999986431  1  1111      1256789999988888877642  112589999997765311    


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc--CCcEEEeccCceeCCCCCCC-C--C----ccHHHHH
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH--GLDLVTLIPSMVVGPFICPK-F--A----GSVRSSL  215 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~-~--~----~~~~~~~  215 (331)
                                        ++...|+.+|.+.+.+++.++.+.  +++++.+.||.+..+-.... .  .    .......
T Consensus       151 ------------------~~~~~Y~~sK~a~~~~~~~la~el~~~Irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~  212 (263)
T PRK06200        151 ------------------GGGPLYTASKHAVVGLVRQLAYELAPKIRVNGVAPGGTVTDLRGPASLGQGETSISDSPGLA  212 (263)
T ss_pred             ------------------CCCchhHHHHHHHHHHHHHHHHHHhcCcEEEEEeCCccccCCcCccccCCCCcccccccchh
Confidence                              113369999999999999888764  58999999999976532110 0  0    0000001


Q ss_pred             HHHhCCCcccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          216 ALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      .... ....+     ..+...+|+++++++++...
T Consensus       213 ~~~~-~~~p~-----~r~~~~~eva~~~~fl~s~~  241 (263)
T PRK06200        213 DMIA-AITPL-----QFAPQPEDHTGPYVLLASRR  241 (263)
T ss_pred             HHhh-cCCCC-----CCCCCHHHHhhhhhheeccc
Confidence            1111 11111     26788999999999998754

>PRK06139 short chain dehydrogenase; Provisional

Probab=99.79  E-value=6e-18  Score=148.09  Aligned_cols=204  Identities=15%  Similarity=0.141  Sum_probs=142.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+++|+||||+|.||+++++.|+++|++|++++|+.     +..+.. +.+.+   ....+.++.+|+.|.+++.++++ 
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~-----~~l~~~~~~~~~---~g~~~~~~~~Dv~d~~~v~~~~~~   77 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGARLVLAARDE-----EALQAVAEECRA---LGAEVLVVPTDVTDADQVKALATQ   77 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHHh---cCCcEEEEEeeCCCHHHHHHHHHH
Confidence            457899999999999999999999999999999987     222211 11111   12467788999999998887763 


Q ss_pred             ------CccEEEEecccCCCC---CC--ChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCc
Q 020104           82 ------GCTGVLHVATPVDFE---DK--EPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~---~~--~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                            ++|++||+|+.....   ..  +..+..+++|+.++.++.+++.    +.+ ..++|++||...+...      
T Consensus        78 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~-~g~iV~isS~~~~~~~------  150 (330)
T PRK06139         78 AASFGGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQG-HGIFINMISLGGFAAQ------  150 (330)
T ss_pred             HHHhcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcC-CCEEEEEcChhhcCCC------
Confidence                  589999999854321   11  1113678999999888777653    444 4689999997655210      


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH----cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE----HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~----~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                      +....|+.+|.+.+.+.+.+..+    .+++++.+.|+.+.++.......         ..+..
T Consensus       151 ----------------p~~~~Y~asKaal~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~~~~~~~~---------~~~~~  205 (330)
T PRK06139        151 ----------------PYAAAYSASKFGLRGFSEALRGELADHPDIHVCDVYPAFMDTPGFRHGAN---------YTGRR  205 (330)
T ss_pred             ----------------CCchhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCccCcccccccc---------ccccc
Confidence                            12347999999877777776654    27999999999998875322100         00110


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD  251 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~  251 (331)
                      ..    ....+...+|+|++++.++.++.
T Consensus       206 ~~----~~~~~~~pe~vA~~il~~~~~~~  230 (330)
T PRK06139        206 LT----PPPPVYDPRRVAKAVVRLADRPR  230 (330)
T ss_pred             cc----CCCCCCCHHHHHHHHHHHHhCCC
Confidence            00    01246789999999999998764

>PRK08339 short chain dehydrogenase; Provisional

Probab=99.79  E-value=9.6e-18  Score=142.87  Aligned_cols=220  Identities=13%  Similarity=0.080  Sum_probs=145.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|++|||||+|.||+++++.|+++|++|++++|+.     +..+.. ..+...  ...++.++.+|+.|++++.++++ 
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~i~~~~~~   79 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGADVILLSRNE-----ENLKKAREKIKSE--SNVDVSYIVADLTKREDLERTVKE   79 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHhh--cCCceEEEEecCCCHHHHHHHHHH
Confidence            357899999999999999999999999999999986     222211 111111  12468899999999988887765 


Q ss_pred             -----CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHH----HHHhcCCccEEEEecccceeecCCCCCCc
Q 020104           82 -----GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILK----SCLKSGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~----~~~~~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                           ++|++||+|+....      ..+++ +..+++|+.++..+++    .+++.+ ..++|++||.....  +     
T Consensus        80 ~~~~g~iD~lv~nag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~~~~~~l~~m~~~~-~g~Ii~isS~~~~~--~-----  150 (263)
T PRK08339         80 LKNIGEPDIFFFSTGGPKPGYFMEMSMEDW-EGAVKLLLYPAVYLTRALVPAMERKG-FGRIIYSTSVAIKE--P-----  150 (263)
T ss_pred             HHhhCCCcEEEECCCCCCCCCcccCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEcCccccC--C-----
Confidence                 58999999985431      11223 3778889777655554    444555 57999999976542  0     


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCC-------CccHHHHHH
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKF-------AGSVRSSLA  216 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~-------~~~~~~~~~  216 (331)
                                     .+....|+.+|.+.+.+.+.++.+.   |++++.+.||.+..+......       .........
T Consensus       151 ---------------~~~~~~y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~  215 (263)
T PRK08339        151 ---------------IPNIALSNVVRISMAGLVRTLAKELGPKGITVNGIMPGIIRTDRVIQLAQDRAKREGKSVEEALQ  215 (263)
T ss_pred             ---------------CCcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccHHHHHHHHhhhhccCCCHHHHHH
Confidence                           0113369999999999999888765   799999999999765211000       000001111


Q ss_pred             HHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEec
Q 020104          217 LILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSS  260 (331)
Q Consensus       217 ~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~  260 (331)
                      ... ...+.     ..+...+|++.++.+++....  ..| .+.+.+
T Consensus       216 ~~~-~~~p~-----~r~~~p~dva~~v~fL~s~~~~~itG~~~~vdg  256 (263)
T PRK08339        216 EYA-KPIPL-----GRLGEPEEIGYLVAFLASDLGSYINGAMIPVDG  256 (263)
T ss_pred             HHh-ccCCc-----ccCcCHHHHHHHHHHHhcchhcCccCceEEECC
Confidence            111 11111     257789999999999987533  344 344544

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=99.79  E-value=6.8e-18  Score=142.11  Aligned_cols=216  Identities=17%  Similarity=0.188  Sum_probs=141.2

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc----
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA----   81 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----   81 (331)
                      |++|||||+|+||++++++|+++|++|+++.|+..    ...+..  ..+......++.++.+|+.|++++.++++    
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~----~~~~~~--~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   74 (242)
T TIGR01829         1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNE----ERAEAW--LQEQGALGFDFRVVEGDVSSFESCKAAVAKVEA   74 (242)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCH----HHHHHH--HHHHHhhCCceEEEEecCCCHHHHHHHHHHHHH
Confidence            57999999999999999999999999999988331    111111  11111112468899999999988777654    


Q ss_pred             ---CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHH----HHhcCCccEEEEecccceeecCCCCCCccc
Q 020104           82 ---GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKS----CLKSGTVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        82 ---~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~----~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                         ++|+|||+|+....      ...++ ...++.|+.++..+++.    +++.+ .+++|++||..... + .      
T Consensus        75 ~~~~id~vi~~ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~iss~~~~~-~-~------  144 (242)
T TIGR01829        75 ELGPIDVLVNNAGITRDATFKKMTYEQW-SAVIDTNLNSVFNVTQPVIDGMRERG-WGRIINISSVNGQK-G-Q------  144 (242)
T ss_pred             HcCCCcEEEECCCCCCCCChhhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEcchhhcC-C-C------
Confidence               48999999986431      11122 36678899987775544    45555 67999999964331 0 0      


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCccc
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEY  225 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  225 (331)
                                    .....|+.+|...+.+++.++.+   .+++++.++|+.+.++.......    ......... ...
T Consensus       145 --------------~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~~~----~~~~~~~~~-~~~  205 (242)
T TIGR01829       145 --------------FGQTNYSAAKAGMIGFTKALAQEGATKGVTVNTISPGYIATDMVMAMRE----DVLNSIVAQ-IPV  205 (242)
T ss_pred             --------------CCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCCCcCccccccch----HHHHHHHhc-CCC
Confidence                          11236999999888888877654   38999999999998875332111    111111111 111


Q ss_pred             ccCCCccceeHHHHHHHHHHhhcCCC--C-CceEEEecc
Q 020104          226 GFLLNTSMVHVDDVARAHIFLLEYPD--A-KGRYICSSH  261 (331)
Q Consensus       226 ~~~~~~~~i~v~D~a~~~~~~~~~~~--~-~~~~~~~~~  261 (331)
                           ..+...+|+++++.+++..+.  . +..+.+++.
T Consensus       206 -----~~~~~~~~~a~~~~~l~~~~~~~~~G~~~~~~gg  239 (242)
T TIGR01829       206 -----GRLGRPEEIAAAVAFLASEEAGYITGATLSINGG  239 (242)
T ss_pred             -----CCCcCHHHHHHHHHHHcCchhcCccCCEEEecCC
Confidence                 145677899999988876542  2 334555543

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>PRK06483 dihydromonapterin reductase; Provisional

Probab=99.79  E-value=1.5e-17  Score=139.55  Aligned_cols=211  Identities=17%  Similarity=0.146  Sum_probs=142.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      |+|++|||||+|.||+++++.|+++|++|++++|+..     ..  ...+..     .++.++.+|+.|.+++.++++  
T Consensus         1 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~-----~~--~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~   68 (236)
T PRK06483          1 MPAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHY-----PA--IDGLRQ-----AGAQCIQADFSTNAGIMAFIDEL   68 (236)
T ss_pred             CCceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCch-----hH--HHHHHH-----cCCEEEEcCCCCHHHHHHHHHHH
Confidence            3578999999999999999999999999999999862     11  111111     236788999999988877653  


Q ss_pred             -----CccEEEEecccCCCC---C--CChhhHHHHHHHHHHHHHHHHHHhc----C-CccEEEEecccceeecCCCCCCc
Q 020104           82 -----GCTGVLHVATPVDFE---D--KEPEEVITQRAINGTLGILKSCLKS----G-TVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~---~--~~~~~~~~~~n~~~~~~l~~~~~~~----~-~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                           ++|++||+|+.....   .  .+..+..+++|+.++..+.+.+...    + ...++|++||..... +      
T Consensus        69 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~-~------  141 (236)
T PRK06483         69 KQHTDGLRAIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEK-G------  141 (236)
T ss_pred             HhhCCCccEEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhcc-C------
Confidence                 489999999864311   1  1122478889999988777666542    1 025899999854321 0      


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc--CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcc
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH--GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREE  224 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~  224 (331)
                                     .+....|+.+|.+.+.+++.++.++  +++++.++||.+..+...   ..   ......... ..
T Consensus       142 ---------------~~~~~~Y~asKaal~~l~~~~a~e~~~~irvn~v~Pg~~~~~~~~---~~---~~~~~~~~~-~~  199 (236)
T PRK06483        142 ---------------SDKHIAYAASKAALDNMTLSFAAKLAPEVKVNSIAPALILFNEGD---DA---AYRQKALAK-SL  199 (236)
T ss_pred             ---------------CCCCccHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCceecCCCC---CH---HHHHHHhcc-Cc
Confidence                           0113469999999999999998875  599999999988532211   01   111111111 11


Q ss_pred             cccCCCccceeHHHHHHHHHHhhcCCCCCc-eEEEec
Q 020104          225 YGFLLNTSMVHVDDVARAHIFLLEYPDAKG-RYICSS  260 (331)
Q Consensus       225 ~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~-~~~~~~  260 (331)
                      ++     .+...+|+++++.+++......| .+.+.+
T Consensus       200 ~~-----~~~~~~~va~~~~~l~~~~~~~G~~i~vdg  231 (236)
T PRK06483        200 LK-----IEPGEEEIIDLVDYLLTSCYVTGRSLPVDG  231 (236)
T ss_pred             cc-----cCCCHHHHHHHHHHHhcCCCcCCcEEEeCc
Confidence            21     35578999999999997554444 344543

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.78  E-value=1.2e-17  Score=140.38  Aligned_cols=205  Identities=20%  Similarity=0.232  Sum_probs=141.2

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHH
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      |..++++|+||||+|+||+++++.|++.|++|++++|++     +....+ +.+..    ..++.++.+|+.+.+++.++
T Consensus         1 ~~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~   71 (238)
T PRK05786          1 MRLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNE-----NKLKRMKKTLSK----YGNIHYVVGDVSSTESARNV   71 (238)
T ss_pred             CCcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHh----cCCeEEEECCCCCHHHHHHH
Confidence            555678999999999999999999999999999999987     222222 11111    13578899999999888776


Q ss_pred             hc-------CccEEEEecccCCCCC-C--ChhhHHHHHHHHHHHHHHHHHHhc-CCccEEEEecccceeecCCCCCCccc
Q 020104           80 IA-------GCTGVLHVATPVDFED-K--EPEEVITQRAINGTLGILKSCLKS-GTVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        80 ~~-------~~d~Vih~a~~~~~~~-~--~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                      ++       ++|.+||+++...... .  +..+..++.|+.++..+++.+... ....++|++||..... . .      
T Consensus        72 ~~~~~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~-~-~------  143 (238)
T PRK05786         72 IEKAAKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGIY-K-A------  143 (238)
T ss_pred             HHHHHHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchhcc-c-C------
Confidence            54       4699999997543111 1  111356788988888887777653 1125899999865421 0 0      


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCccc
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEY  225 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  225 (331)
                                   .++...|+.+|...+.+++.++.+.   +++++++||+.++++-....       .....   . ..
T Consensus       144 -------------~~~~~~Y~~sK~~~~~~~~~~~~~~~~~gi~v~~i~pg~v~~~~~~~~-------~~~~~---~-~~  199 (238)
T PRK05786        144 -------------SPDQLSYAVAKAGLAKAVEILASELLGRGIRVNGIAPTTISGDFEPER-------NWKKL---R-KL  199 (238)
T ss_pred             -------------CCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCCCCchh-------hhhhh---c-cc
Confidence                         1123469999999998888877654   89999999999998742110       00000   0 00


Q ss_pred             ccCCCccceeHHHHHHHHHHhhcCC
Q 020104          226 GFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       226 ~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      .    ..++..+|+++++++++..+
T Consensus       200 ~----~~~~~~~~va~~~~~~~~~~  220 (238)
T PRK05786        200 G----DDMAPPEDFAKVIIWLLTDE  220 (238)
T ss_pred             c----CCCCCHHHHHHHHHHHhccc
Confidence            0    13567899999999999753

>PRK08703 short chain dehydrogenase; Provisional

Probab=99.78  E-value=1e-17  Score=140.81  Aligned_cols=200  Identities=15%  Similarity=0.132  Sum_probs=136.1

Q ss_pred             CCCC-CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCC--ccH
Q 020104            1 MEEG-KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHP--DGF   76 (331)
Q Consensus         1 M~~~-~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~--~~~   76 (331)
                      |..+ +++++||||+|+||+++++.|+++|++|++++|+..     ..+.. ..+.+.  ....+.++.+|+.+.  +++
T Consensus         1 ~~~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~-----~~~~~~~~l~~~--~~~~~~~~~~D~~~~~~~~~   73 (239)
T PRK08703          1 MATLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQK-----KLEKVYDAIVEA--GHPEPFAIRFDLMSAEEKEF   73 (239)
T ss_pred             CCCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChH-----HHHHHHHHHHHc--CCCCcceEEeeecccchHHH
Confidence            5543 478999999999999999999999999999999872     22211 111111  113456778898753  334


Q ss_pred             HHHh--------cCccEEEEecccCCC----CC---CChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEeccccee
Q 020104           77 DAAI--------AGCTGVLHVATPVDF----ED---KEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAV  137 (331)
Q Consensus        77 ~~~~--------~~~d~Vih~a~~~~~----~~---~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~  137 (331)
                      .+++        .++|+|||+|+....    ..   .++ ...+++|+.++.++++++.+    .+ ..++|++||....
T Consensus        74 ~~~~~~i~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~-~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~~ss~~~~  151 (239)
T PRK08703         74 EQFAATIAEATQGKLDGIVHCAGYFYALSPLDFQTVAEW-VNQYRINTVAPMGLTRALFPLLKQSP-DASVIFVGESHGE  151 (239)
T ss_pred             HHHHHHHHHHhCCCCCEEEEeccccccCCCccccCHHHH-HHHHHHhhhHHHHHHHHHHHHHHhCC-CCEEEEEeccccc
Confidence            4332        358999999985321    11   122 25789999998888887754    33 4699999985432


Q ss_pred             ecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc----CCcEEEeccCceeCCCCCCCCCccHHH
Q 020104          138 FYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH----GLDLVTLIPSMVVGPFICPKFAGSVRS  213 (331)
Q Consensus       138 ~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~----~~~~~ilRp~~v~G~~~~~~~~~~~~~  213 (331)
                      .   +                   .+....|+.+|.+.+.+++.++.+.    +++++.++||.++++......+     
T Consensus       152 ~---~-------------------~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~i~v~~v~pG~v~t~~~~~~~~-----  204 (239)
T PRK08703        152 T---P-------------------KAYWGGFGASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQRIKSHP-----  204 (239)
T ss_pred             c---C-------------------CCCccchHHhHHHHHHHHHHHHHHhccCCCeEEEEEecCcccCccccccCC-----
Confidence            1   0                   0113469999999999999888765    5899999999999885321100     


Q ss_pred             HHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcC
Q 020104          214 SLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEY  249 (331)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~  249 (331)
                            +.  ..     ..+...+|++.++.+++..
T Consensus       205 ------~~--~~-----~~~~~~~~~~~~~~~~~~~  227 (239)
T PRK08703        205 ------GE--AK-----SERKSYGDVLPAFVWWASA  227 (239)
T ss_pred             ------CC--Cc-----cccCCHHHHHHHHHHHhCc
Confidence                  00  00     1356889999999999974

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=99.78  E-value=1.9e-17  Score=157.75  Aligned_cols=222  Identities=19%  Similarity=0.170  Sum_probs=144.9

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      +|++|||||+|+||++++++|+++|++|++++|+.     ...... ..+.... ....+..+.+|+.|.+++.++++  
T Consensus       414 gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~-----~~~~~~~~~l~~~~-~~~~~~~v~~Dvtd~~~v~~a~~~i  487 (676)
T TIGR02632       414 RRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNL-----EAAEAVAAEINGQF-GAGRAVALKMDVTDEQAVKAAFADV  487 (676)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCH-----HHHHHHHHHHHhhc-CCCcEEEEECCCCCHHHHHHHHHHH
Confidence            57899999999999999999999999999999986     222211 1111000 11356788999999998888775  


Q ss_pred             -----CccEEEEecccCCCCC------CChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCCCCc
Q 020104           82 -----GCTGVLHVATPVDFED------KEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~~------~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                           ++|+|||+||......      .++ +..+++|+.+...+.+.+    ++.+...++|++||...+...      
T Consensus       488 ~~~~g~iDilV~nAG~~~~~~~~~~~~e~~-~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~~~------  560 (676)
T TIGR02632       488 ALAYGGVDIVVNNAGIATSSPFEETTLQEW-QLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVYAG------  560 (676)
T ss_pred             HHhcCCCcEEEECCCCCCCCCcccCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcCCC------
Confidence                 6899999998643211      112 366788888876665444    333312589999997654211      


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCcee-CCCCCCCCCc--c-------HHH
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVV-GPFICPKFAG--S-------VRS  213 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~-G~~~~~~~~~--~-------~~~  213 (331)
                                      +....|+.+|.+.+.+++.++.+.   +++++.++|+.++ |.+.......  .       ...
T Consensus       561 ----------------~~~~aY~aSKaA~~~l~r~lA~el~~~gIrVn~V~Pg~V~~~s~~~~~~~~~~~~~~~~~~~~~  624 (676)
T TIGR02632       561 ----------------KNASAYSAAKAAEAHLARCLAAEGGTYGIRVNTVNPDAVLQGSGIWDGEWREERAAAYGIPADE  624 (676)
T ss_pred             ----------------CCCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEECCceecCcccccccchhhhhhcccCChHH
Confidence                            124579999999999999988764   7999999999987 3322111000  0       000


Q ss_pred             HHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC--C-CceEEEecc
Q 020104          214 SLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--A-KGRYICSSH  261 (331)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~-~~~~~~~~~  261 (331)
                      ...... ....+     ..+++.+|+|+++.+++....  . +.+++++++
T Consensus       625 ~~~~~~-~r~~l-----~r~v~peDVA~av~~L~s~~~~~~TG~~i~vDGG  669 (676)
T TIGR02632       625 LEEHYA-KRTLL-----KRHIFPADIAEAVFFLASSKSEKTTGCIITVDGG  669 (676)
T ss_pred             HHHHHH-hcCCc-----CCCcCHHHHHHHHHHHhCCcccCCcCcEEEECCC
Confidence            000000 11111     367899999999999886432  2 345666553

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=99.78  E-value=2.6e-17  Score=140.19  Aligned_cols=210  Identities=15%  Similarity=0.095  Sum_probs=139.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcc-ccccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSK-DLSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|++|||||+|.||.++++.|+++|++|+++.|+..    .... ....+..   ...++.++.+|+.|.+++.++++ 
T Consensus         6 ~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~----~~~~~~~~~l~~---~~~~~~~~~~Dl~~~~~i~~~~~~   78 (261)
T PRK08936          6 EGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDE----EEANDVAEEIKK---AGGEAIAVKGDVTVESDVVNLIQT   78 (261)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCH----HHHHHHHHHHHH---cCCeEEEEEecCCCHHHHHHHHHH
Confidence            4579999999999999999999999999998888641    1111 1111111   12457788999999988877664 


Q ss_pred             ------CccEEEEecccCCCCC---C--ChhhHHHHHHHHHHHHHHH----HHHhcCCccEEEEecccceeecCCCCCCc
Q 020104           82 ------GCTGVLHVATPVDFED---K--EPEEVITQRAINGTLGILK----SCLKSGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~~---~--~~~~~~~~~n~~~~~~l~~----~~~~~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                            ++|++||+|+......   .  +..+..+++|+.++..+++    .+++.+.-.++|++||...+.  +     
T Consensus        79 ~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~~--~-----  151 (261)
T PRK08936         79 AVKEFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQI--P-----  151 (261)
T ss_pred             HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccccccC--C-----
Confidence                  5899999998643211   1  1123678899887765544    445543135899999964331  0     


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE  223 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  223 (331)
                                     .++...|+.+|.+.+.+.+.++.+.   +++++.++|+.+.++........ ... ...... ..
T Consensus       152 ---------------~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~-~~~-~~~~~~-~~  213 (261)
T PRK08936        152 ---------------WPLFVHYAASKGGVKLMTETLAMEYAPKGIRVNNIGPGAINTPINAEKFAD-PKQ-RADVES-MI  213 (261)
T ss_pred             ---------------CCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECcCCCCccccccCC-HHH-HHHHHh-cC
Confidence                           1224479999988888888776544   89999999999988753321111 111 111111 11


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      .+     ..+...+|+++++.+++...
T Consensus       214 ~~-----~~~~~~~~va~~~~~l~s~~  235 (261)
T PRK08936        214 PM-----GYIGKPEEIAAVAAWLASSE  235 (261)
T ss_pred             CC-----CCCcCHHHHHHHHHHHcCcc
Confidence            12     25778899999999998754

>TIGR02415 23BDH acetoin reductases

Probab=99.78  E-value=1.1e-17  Score=141.93  Aligned_cols=219  Identities=18%  Similarity=0.185  Sum_probs=144.1

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      |+++||||+|+||.+++++|++.|++|+++.|+.     ...... ..+.   ....++..+.+|+.|++++.++++   
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~-----~~~~~~~~~l~---~~~~~~~~~~~Dl~~~~~i~~~~~~~~   72 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNE-----ETAKETAKEIN---QAGGKAVAYKLDVSDKDQVFSAIDQAA   72 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHH---hcCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence            4799999999999999999999999999999876     221111 1111   112467889999999998877754   


Q ss_pred             ----CccEEEEecccCCCC---CCCh--hhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCCccc
Q 020104           82 ----GCTGVLHVATPVDFE---DKEP--EEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        82 ----~~d~Vih~a~~~~~~---~~~~--~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                          .+|+|||+|+.....   ..+.  .+..+++|+.++..+++++..    .+...++|++||.......        
T Consensus        73 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~--------  144 (254)
T TIGR02415        73 EKFGGFDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHEGN--------  144 (254)
T ss_pred             HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcCCC--------
Confidence                479999999864321   1111  136788999998877766543    3313689999996554211        


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCc-------cHHHHHHHH
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAG-------SVRSSLALI  218 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~-------~~~~~~~~~  218 (331)
                                    +..+.|+.+|.+.+.+++.++.+.   ++++++++|+.+..+........       .+.......
T Consensus       145 --------------~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~~  210 (254)
T TIGR02415       145 --------------PILSAYSSTKFAVRGLTQTAAQELAPKGITVNAYCPGIVKTPMWEEIDEETSEIAGKPIGEGFEEF  210 (254)
T ss_pred             --------------CCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccChhhhhhhhhhhhcccCchHHHHHHH
Confidence                          113469999999999998877664   79999999998866532110000       000000000


Q ss_pred             hCCCcccccCCCccceeHHHHHHHHHHhhcCCCC--CceEE-Eec
Q 020104          219 LGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDA--KGRYI-CSS  260 (331)
Q Consensus       219 ~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~--~~~~~-~~~  260 (331)
                      . .....     ..+...+|+++++.+++.....  .|.++ +.+
T Consensus       211 ~-~~~~~-----~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~d~  249 (254)
T TIGR02415       211 S-SEIAL-----GRPSEPEDVAGLVSFLASEDSDYITGQSILVDG  249 (254)
T ss_pred             H-hhCCC-----CCCCCHHHHHHHHHhhcccccCCccCcEEEecC
Confidence            0 00111     2578999999999999987542  35444 444

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK07062 short chain dehydrogenase; Provisional

Probab=99.77  E-value=2.9e-17  Score=140.28  Aligned_cols=221  Identities=18%  Similarity=0.106  Sum_probs=142.3

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      +++++||||+|+||.++++.|+++|++|++++|+.     +..+.. ..+.+. ....++..+.+|+.|.+++.++++  
T Consensus         8 ~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~v~~~~~~~   81 (265)
T PRK07062          8 GRVAVVTGGSSGIGLATVELLLEAGASVAICGRDE-----ERLASAEARLREK-FPGARLLAARCDVLDEADVAAFAAAV   81 (265)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH-----HHHHHHHHHHHhh-CCCceEEEEEecCCCHHHHHHHHHHH
Confidence            47899999999999999999999999999999987     222221 111111 011357789999999988877653  


Q ss_pred             -----CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCCCCc
Q 020104           82 -----GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                           ++|++||+||.....      ..++ ...+++|+.+...+.+++    ++.+ ..++|++||...+...      
T Consensus        82 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~------  153 (265)
T PRK07062         82 EARFGGVDMLVNNAGQGRVSTFADTTDDAW-RDELELKYFSVINPTRAFLPLLRASA-AASIVCVNSLLALQPE------  153 (265)
T ss_pred             HHhcCCCCEEEECCCCCCCCChhhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHhccC-CcEEEEeccccccCCC------
Confidence                 589999999864311      1123 367788877766655544    4444 4699999997654210      


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCC------ccHHHHHHH
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFA------GSVRSSLAL  217 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~------~~~~~~~~~  217 (331)
                                      +....|+.+|.+.+.+++.++.+   .+++++.++||.+..+.......      .........
T Consensus       154 ----------------~~~~~y~asKaal~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~  217 (265)
T PRK07062        154 ----------------PHMVATSAARAGLLNLVKSLATELAPKGVRVNSILLGLVESGQWRRRYEARADPGQSWEAWTAA  217 (265)
T ss_pred             ----------------CCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccchhhhHHHHhhccCCChHHHHHH
Confidence                            11346999999988888877665   37999999999997663211000      000111111


Q ss_pred             Hh-CCCcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEec
Q 020104          218 IL-GNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSS  260 (331)
Q Consensus       218 ~~-~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~  260 (331)
                      .. ......     ..+...+|+++++++++....  ..| .+.+.+
T Consensus       218 ~~~~~~~p~-----~r~~~p~~va~~~~~L~s~~~~~~tG~~i~vdg  259 (265)
T PRK07062        218 LARKKGIPL-----GRLGRPDEAARALFFLASPLSSYTTGSHIDVSG  259 (265)
T ss_pred             HhhcCCCCc-----CCCCCHHHHHHHHHHHhCchhcccccceEEEcC
Confidence            10 011111     257788999999999887532  234 444544

>PRK06953 short chain dehydrogenase; Provisional

Probab=99.77  E-value=3e-17  Score=136.34  Aligned_cols=188  Identities=14%  Similarity=0.113  Sum_probs=136.0

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh---c
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI---A   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~---~   81 (331)
                      |++++||||+|+||++++++|++.|++|++++|+.     +..+.+.   .     .+++++.+|+.+.+++.+++   .
T Consensus         1 ~~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~-----~~~~~~~---~-----~~~~~~~~D~~~~~~v~~~~~~~~   67 (222)
T PRK06953          1 MKTVLIVGASRGIGREFVRQYRADGWRVIATARDA-----AALAALQ---A-----LGAEALALDVADPASVAGLAWKLD   67 (222)
T ss_pred             CceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCH-----HHHHHHH---h-----ccceEEEecCCCHHHHHHHHHHhc
Confidence            46899999999999999999999999999999986     2222221   1     24578999999998888764   2


Q ss_pred             --CccEEEEecccCCC--------CCCChhhHHHHHHHHHHHHHHHHHHhc--CCccEEEEecccceeecCCCCCCcccC
Q 020104           82 --GCTGVLHVATPVDF--------EDKEPEEVITQRAINGTLGILKSCLKS--GTVKRVVYTSSNAAVFYNDKDVDMMDE  149 (331)
Q Consensus        82 --~~d~Vih~a~~~~~--------~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~~~~E  149 (331)
                        ++|+|||+++....        ..+++ +..+++|+.++.++++++.+.  ....++|++||..... +...      
T Consensus        68 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~-~~~~------  139 (222)
T PRK06953         68 GEALDAAVYVAGVYGPRTEGVEPITREDF-DAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRMGSI-GDAT------  139 (222)
T ss_pred             CCCCCEEEECCCcccCCCCCcccCCHHHH-HHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCccccc-cccc------
Confidence              48999999987521        11223 378999999999999988752  1124789999865432 1100      


Q ss_pred             CCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc-CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccC
Q 020104          150 TFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH-GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFL  228 (331)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~-~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (331)
                                  ..+.+.|+.+|...+.+++.++.++ +++++.++|+.+..+....                       
T Consensus       140 ------------~~~~~~Y~~sK~a~~~~~~~~~~~~~~i~v~~v~Pg~i~t~~~~~-----------------------  184 (222)
T PRK06953        140 ------------GTTGWLYRASKAALNDALRAASLQARHATCIALHPGWVRTDMGGA-----------------------  184 (222)
T ss_pred             ------------CCCccccHHhHHHHHHHHHHHhhhccCcEEEEECCCeeecCCCCC-----------------------
Confidence                        0112369999999999999887665 7899999999997763110                       


Q ss_pred             CCccceeHHHHHHHHHHhhcCC
Q 020104          229 LNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       229 ~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                        ...+..++.+..+..++...
T Consensus       185 --~~~~~~~~~~~~~~~~~~~~  204 (222)
T PRK06953        185 --QAALDPAQSVAGMRRVIAQA  204 (222)
T ss_pred             --CCCCCHHHHHHHHHHHHHhc
Confidence              02356678888888876644

>PRK06484 short chain dehydrogenase; Validated

Probab=99.77  E-value=1.5e-17  Score=155.59  Aligned_cols=218  Identities=18%  Similarity=0.194  Sum_probs=149.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|++|||||+|.||.++++.|+++|++|++++|+.     ...+.+..  +.   ...+..+.+|+.|++++.++++  
T Consensus       268 ~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~-----~~~~~~~~--~~---~~~~~~~~~D~~~~~~~~~~~~~~  337 (520)
T PRK06484        268 SPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDA-----EGAKKLAE--AL---GDEHLSVQADITDEAAVESAFAQI  337 (520)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHH--Hh---CCceeEEEccCCCHHHHHHHHHHH
Confidence            357899999999999999999999999999999976     22222211  11   1346678999999988887764  


Q ss_pred             -----CccEEEEecccCCC-------CCCChhhHHHHHHHHHHHHHHHHHHhc-CCccEEEEecccceeecCCCCCCccc
Q 020104           82 -----GCTGVLHVATPVDF-------EDKEPEEVITQRAINGTLGILKSCLKS-GTVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                           .+|++||+||....       ...++ +..+++|+.++.++++++... ....++|++||...+..         
T Consensus       338 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~-~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~---------  407 (520)
T PRK06484        338 QARWGRLDVLVNNAGIAEVFKPSLEQSAEDF-TRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLLA---------  407 (520)
T ss_pred             HHHcCCCCEEEECCCCcCCCCChhhCCHHHH-HHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcCC---------
Confidence                 48999999986421       11123 378899999999999887764 11369999999765521         


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCccc
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEY  225 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  225 (331)
                                   .++...|+.+|...+.+++.++.+.   +++++.+.||.+.++......... ......... ...+
T Consensus       408 -------------~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~-~~~~~~~~~-~~~~  472 (520)
T PRK06484        408 -------------LPPRNAYCASKAAVTMLSRSLACEWAPAGIRVNTVAPGYIETPAVLALKASG-RADFDSIRR-RIPL  472 (520)
T ss_pred             -------------CCCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCchhhhhcccc-HHHHHHHHh-cCCC
Confidence                         1123479999999999999888764   799999999999877422110000 000111111 1111


Q ss_pred             ccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          226 GFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       226 ~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                           ..+...+|+++++++++....  ..| .+.+.+.
T Consensus       473 -----~~~~~~~dia~~~~~l~s~~~~~~~G~~i~vdgg  506 (520)
T PRK06484        473 -----GRLGDPEEVAEAIAFLASPAASYVNGATLTVDGG  506 (520)
T ss_pred             -----CCCcCHHHHHHHHHHHhCccccCccCcEEEECCC
Confidence                 146789999999999987542  234 4556554

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=99.77  E-value=2.1e-17  Score=140.65  Aligned_cols=207  Identities=19%  Similarity=0.103  Sum_probs=135.6

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      |++|||||+|.||++++++|+++|++|++++|+.     ...+. ...+.+    ..++.++.+|+.|.+++.++++   
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~-----~~~~~~~~~l~~----~~~~~~~~~Dv~d~~~~~~~~~~~~   71 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNE-----ENLEKALKELKE----YGEVYAVKADLSDKDDLKNLVKEAW   71 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCH-----HHHHHHHHHHHh----cCCceEEEcCCCCHHHHHHHHHHHH
Confidence            4899999999999999999999999999999986     22111 111111    1357789999999988887763   


Q ss_pred             ----CccEEEEecccCCC-----CCCChh--hHHHHHHHHHHHHHHH----HHH-hcCCccEEEEecccceeecCCCCCC
Q 020104           82 ----GCTGVLHVATPVDF-----EDKEPE--EVITQRAINGTLGILK----SCL-KSGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ----~~d~Vih~a~~~~~-----~~~~~~--~~~~~~n~~~~~~l~~----~~~-~~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                          ++|+|||+||....     ...+..  ...+++|+.++..+..    .+. +.+ ..++|++||.....  +    
T Consensus        72 ~~~g~id~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~-~g~iv~isS~~~~~--~----  144 (259)
T PRK08340         72 ELLGGIDALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKM-KGVLVYLSSVSVKE--P----  144 (259)
T ss_pred             HhcCCCCEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCC-CCEEEEEeCcccCC--C----
Confidence                58999999986421     111111  1445677766544433    333 223 46999999976542  0    


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCC-------ccHHHH-
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFA-------GSVRSS-  214 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~-------~~~~~~-  214 (331)
                                      .++...|+.+|...+.+++.++.++   +++++.+.||.+-.+.......       ...... 
T Consensus       145 ----------------~~~~~~y~~sKaa~~~~~~~la~e~~~~gI~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~  208 (259)
T PRK08340        145 ----------------MPPLVLADVTRAGLVQLAKGVSRTYGGKGIRAYTVLLGSFDTPGARENLARIAEERGVSFEETW  208 (259)
T ss_pred             ----------------CCCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeccCcccCccHHHHHHhhhhccCCchHHHH
Confidence                            1123479999999999999988865   6899999999887664211000       000000 


Q ss_pred             HHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          215 LALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      ...... ..+.     ..+...+|+++++.+++..+
T Consensus       209 ~~~~~~-~~p~-----~r~~~p~dva~~~~fL~s~~  238 (259)
T PRK08340        209 EREVLE-RTPL-----KRTGRWEELGSLIAFLLSEN  238 (259)
T ss_pred             HHHHhc-cCCc-----cCCCCHHHHHHHHHHHcCcc
Confidence            000111 1111     25778999999999999854

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=99.77  E-value=8.5e-18  Score=143.26  Aligned_cols=210  Identities=20%  Similarity=0.218  Sum_probs=144.0

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |...+++++||||+|+||+++++.|+++|++|++++|+.     ...+.   +.+.  ...++..+.+|+.|.+++.+++
T Consensus         1 m~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~---l~~~--~~~~~~~~~~D~~~~~~~~~~~   70 (262)
T TIGR03325         1 MRLKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSA-----AGLQE---LEAA--HGDAVVGVEGDVRSLDDHKEAV   70 (262)
T ss_pred             CCcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH-----HHHHH---HHhh--cCCceEEEEeccCCHHHHHHHH
Confidence            665678999999999999999999999999999999876     22222   2111  1245788999999988777665


Q ss_pred             c-------CccEEEEecccCCC-------CC----CChhhHHHHHHHHHHHHHHHHHHhcC--CccEEEEecccceeecC
Q 020104           81 A-------GCTGVLHVATPVDF-------ED----KEPEEVITQRAINGTLGILKSCLKSG--TVKRVVYTSSNAAVFYN  140 (331)
Q Consensus        81 ~-------~~d~Vih~a~~~~~-------~~----~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~  140 (331)
                      +       ++|++||+||....       ..    .++ +..+++|+.++..+++++...-  .-.++|++||...+...
T Consensus        71 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~-~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~~~~  149 (262)
T TIGR03325        71 ARCVAAFGKIDCLIPNAGIWDYSTALVDIPDDRIDEAF-DEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGFYPN  149 (262)
T ss_pred             HHHHHHhCCCCEEEECCCCCccCCccccCCchhhhHHH-HHhheeecHhHHHHHHHHHHHHhhcCCCEEEEeccceecCC
Confidence            3       58999999985321       00    012 3788999999999999887531  12478998886654210


Q ss_pred             CCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc--CCcEEEeccCceeCCCCCCC-C--Cc-cHHH-
Q 020104          141 DKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH--GLDLVTLIPSMVVGPFICPK-F--AG-SVRS-  213 (331)
Q Consensus       141 ~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~-~--~~-~~~~-  213 (331)
                                            +....|+.+|.+.+.+++.++.+.  .++++.+.||.+..+-.... .  .. .... 
T Consensus       150 ----------------------~~~~~Y~~sKaa~~~l~~~la~e~~~~irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~  207 (262)
T TIGR03325       150 ----------------------GGGPLYTAAKHAVVGLVKELAFELAPYVRVNGVAPGGMSSDLRGPKSLGMADKSISTV  207 (262)
T ss_pred             ----------------------CCCchhHHHHHHHHHHHHHHHHhhccCeEEEEEecCCCcCCCcccccccccccccccc
Confidence                                  112369999999999999998875  38999999999987632210 0  00 0000 


Q ss_pred             -HHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcC
Q 020104          214 -SLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEY  249 (331)
Q Consensus       214 -~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~  249 (331)
                       ....... ...+     ..+...+|+++++++++..
T Consensus       208 ~~~~~~~~-~~p~-----~r~~~p~eva~~~~~l~s~  238 (262)
T TIGR03325       208 PLGDMLKS-VLPI-----GRMPDAEEYTGAYVFFATR  238 (262)
T ss_pred             chhhhhhh-cCCC-----CCCCChHHhhhheeeeecC
Confidence             0011111 1111     2577899999999998875

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=99.77  E-value=2.7e-17  Score=139.98  Aligned_cols=219  Identities=14%  Similarity=0.124  Sum_probs=140.3

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      +|++|||||++.||+++++.|++.|++|+++.|+..    +..+.. ..+...  ...++.++.+|+.|++++.++++  
T Consensus         8 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~   81 (260)
T PRK08416          8 GKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNV----EEANKIAEDLEQK--YGIKAKAYPLNILEPETYKELFKKI   81 (260)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCH----HHHHHHHHHHHHh--cCCceEEEEcCCCCHHHHHHHHHHH
Confidence            578999999999999999999999999988876441    111111 111111  12467899999999988877764  


Q ss_pred             -----CccEEEEecccCCC------C---CCC--hhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCC
Q 020104           82 -----GCTGVLHVATPVDF------E---DKE--PEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYND  141 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~------~---~~~--~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~  141 (331)
                           ++|++||+|+....      .   ..+  .....+++|+.+...+.+.+    ++.+ ..++|++||.....+. 
T Consensus        82 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~-  159 (260)
T PRK08416         82 DEDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVG-GGSIISLSSTGNLVYI-  159 (260)
T ss_pred             HHhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccC-CEEEEEEeccccccCC-
Confidence                 58999999975321      0   011  11256777877766555444    3434 4699999996533110 


Q ss_pred             CCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHH
Q 020104          142 KDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALI  218 (331)
Q Consensus       142 ~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~  218 (331)
                                           +....|+.+|.+.+.+++.++.++   +++++.+.||.+-.+.... .... .......
T Consensus       160 ---------------------~~~~~Y~asK~a~~~~~~~la~el~~~gi~v~~v~PG~i~T~~~~~-~~~~-~~~~~~~  216 (260)
T PRK08416        160 ---------------------ENYAGHGTSKAAVETMVKYAATELGEKNIRVNAVSGGPIDTDALKA-FTNY-EEVKAKT  216 (260)
T ss_pred             ---------------------CCcccchhhHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccChhhhh-ccCC-HHHHHHH
Confidence                                 112369999999999999988875   7999999999886553111 1110 1111111


Q ss_pred             hCCCcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEec
Q 020104          219 LGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSS  260 (331)
Q Consensus       219 ~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~  260 (331)
                      ... ...     ..+...+|++.++++++....  ..| .+.+.+
T Consensus       217 ~~~-~~~-----~r~~~p~~va~~~~~l~~~~~~~~~G~~i~vdg  255 (260)
T PRK08416        217 EEL-SPL-----NRMGQPEDLAGACLFLCSEKASWLTGQTIVVDG  255 (260)
T ss_pred             Hhc-CCC-----CCCCCHHHHHHHHHHHcChhhhcccCcEEEEcC
Confidence            111 111     257789999999999987542  234 444544

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.77  E-value=1.3e-16  Score=136.97  Aligned_cols=216  Identities=24%  Similarity=0.243  Sum_probs=157.3

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCccE
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTG   85 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~   85 (331)
                      |+||||||||++|++++++|+++|++|++++|++     +......         .+++...+|+.++..+...+.++|.
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~-----~~~~~~~---------~~v~~~~~d~~~~~~l~~a~~G~~~   66 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNP-----EAAAALA---------GGVEVVLGDLRDPKSLVAGAKGVDG   66 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCH-----HHHHhhc---------CCcEEEEeccCCHhHHHHHhccccE
Confidence            4799999999999999999999999999999998     2322222         4789999999999999999999999


Q ss_pred             EEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCCCC
Q 020104           86 VLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWG  165 (331)
Q Consensus        86 Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~  165 (331)
                      ++++.+... +.. .   ..........+..+++. .+ +++++++|......                        ...
T Consensus        67 ~~~i~~~~~-~~~-~---~~~~~~~~~~~~a~~a~-~~-~~~~~~~s~~~~~~------------------------~~~  115 (275)
T COG0702          67 VLLISGLLD-GSD-A---FRAVQVTAVVRAAEAAG-AG-VKHGVSLSVLGADA------------------------ASP  115 (275)
T ss_pred             EEEEecccc-ccc-c---hhHHHHHHHHHHHHHhc-CC-ceEEEEeccCCCCC------------------------CCc
Confidence            999988654 221 1   22333444455555555 44 67899998855421                        113


Q ss_pred             chhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCC-CccceeHHHHHHHHH
Q 020104          166 KSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLL-NTSMVHVDDVARAHI  244 (331)
Q Consensus       166 ~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~D~a~~~~  244 (331)
                      ..|..+|..+|+.+..    .+++++++|+..+|......     . .......+.+ ...... ..+++..+|++.++.
T Consensus       116 ~~~~~~~~~~e~~l~~----sg~~~t~lr~~~~~~~~~~~-----~-~~~~~~~~~~-~~~~~~~~~~~i~~~d~a~~~~  184 (275)
T COG0702         116 SALARAKAAVEAALRS----SGIPYTTLRRAAFYLGAGAA-----F-IEAAEAAGLP-VIPRGIGRLSPIAVDDVAEALA  184 (275)
T ss_pred             cHHHHHHHHHHHHHHh----cCCCeEEEecCeeeeccchh-----H-HHHHHhhCCc-eecCCCCceeeeEHHHHHHHHH
Confidence            4799999999999987    68999999977776554221     1 1111112222 222222 468999999999999


Q ss_pred             HhhcCCCC-CceEEEec-cccCHHHHHHHHHhhCC
Q 020104          245 FLLEYPDA-KGRYICSS-HTLTIQEMAEFLSAKYP  277 (331)
Q Consensus       245 ~~~~~~~~-~~~~~~~~-~~~s~~e~~~~i~~~~~  277 (331)
                      ..+..+.. +..|.+++ +..+..|+++.+....+
T Consensus       185 ~~l~~~~~~~~~~~l~g~~~~~~~~~~~~l~~~~g  219 (275)
T COG0702         185 AALDAPATAGRTYELAGPEALTLAELASGLDYTIG  219 (275)
T ss_pred             HHhcCCcccCcEEEccCCceecHHHHHHHHHHHhC
Confidence            99987754 45777655 68999999999999776

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=99.77  E-value=7e-17  Score=122.82  Aligned_cols=202  Identities=17%  Similarity=0.186  Sum_probs=144.1

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCccE
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTG   85 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~   85 (331)
                      |||.|+||||.+|++++++.+++||+|++++|++     ++...+          +++..++.|+.|++++.+.+.+.|+
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~-----~K~~~~----------~~~~i~q~Difd~~~~a~~l~g~Da   65 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNA-----SKLAAR----------QGVTILQKDIFDLTSLASDLAGHDA   65 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeCh-----Hhcccc----------ccceeecccccChhhhHhhhcCCce
Confidence            5899999999999999999999999999999999     221111          4678899999999999999999999


Q ss_pred             EEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCCCC
Q 020104           86 VLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWG  165 (331)
Q Consensus        86 Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~  165 (331)
                      ||..-+...   .++.    +........|++..+..+ ++|++.++..+...- ++....++-.           ..|.
T Consensus        66 VIsA~~~~~---~~~~----~~~~k~~~~li~~l~~ag-v~RllVVGGAGSL~i-d~g~rLvD~p-----------~fP~  125 (211)
T COG2910          66 VISAFGAGA---SDND----ELHSKSIEALIEALKGAG-VPRLLVVGGAGSLEI-DEGTRLVDTP-----------DFPA  125 (211)
T ss_pred             EEEeccCCC---CChh----HHHHHHHHHHHHHHhhcC-CeeEEEEcCccceEE-cCCceeecCC-----------CCch
Confidence            998766532   1222    222344778888888888 899999988665542 2222222222           2334


Q ss_pred             chhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHHHHHHHHHH
Q 020104          166 KSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIF  245 (331)
Q Consensus       166 ~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~  245 (331)
                      ..|...+..+|.+ ..+..+..++|+.+.|+..|-|+.+....+         .|+...+.+...-++|...|.|-+++-
T Consensus       126 ey~~~A~~~ae~L-~~Lr~~~~l~WTfvSPaa~f~PGerTg~yr---------lggD~ll~n~~G~SrIS~aDYAiA~lD  195 (211)
T COG2910         126 EYKPEALAQAEFL-DSLRAEKSLDWTFVSPAAFFEPGERTGNYR---------LGGDQLLVNAKGESRISYADYAIAVLD  195 (211)
T ss_pred             hHHHHHHHHHHHH-HHHhhccCcceEEeCcHHhcCCccccCceE---------eccceEEEcCCCceeeeHHHHHHHHHH
Confidence            4577777777743 334444569999999999999976643322         122222222222489999999999999


Q ss_pred             hhcCCCC
Q 020104          246 LLEYPDA  252 (331)
Q Consensus       246 ~~~~~~~  252 (331)
                      -++++..
T Consensus       196 e~E~~~h  202 (211)
T COG2910         196 ELEKPQH  202 (211)
T ss_pred             HHhcccc
Confidence            9988754

>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative

Probab=99.77  E-value=3.4e-17  Score=137.64  Aligned_cols=201  Identities=17%  Similarity=0.229  Sum_probs=138.7

Q ss_pred             EEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc-----
Q 020104            8 VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA-----   81 (331)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-----   81 (331)
                      |+||||+|+||.++++.|+++|++|+++.|...    ..... ...+.   ....++.++.+|+.|.+++.++++     
T Consensus         1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~----~~~~~~~~~l~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   73 (239)
T TIGR01831         1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGR----SDAESVVSAIQ---AQGGNARLLQFDVADRVACRTLLEADIAE   73 (239)
T ss_pred             CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCH----HHHHHHHHHHH---HcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence            689999999999999999999999999887641    11111 11111   112468899999999988877654     


Q ss_pred             --CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHH-----hcCCccEEEEecccceeecCCCCCCccc
Q 020104           82 --GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCL-----KSGTVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        82 --~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~-----~~~~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                        .+|++||+|+....      ...++. ..+++|+.++.++++++.     +.+ ..++|++||...+...        
T Consensus        74 ~~~i~~li~~ag~~~~~~~~~~~~~~~~-~~~~~n~~~~~~l~~~~~~~~~~~~~-~~~iv~vsS~~~~~~~--------  143 (239)
T TIGR01831        74 HGAYYGVVLNAGITRDAAFPALSEEDWD-IVIHTNLDGFYNVIHPCTMPMIRARQ-GGRIITLASVSGVMGN--------  143 (239)
T ss_pred             cCCCCEEEECCCCCCCCchhhCCHHHHH-HHHHHHhHHHHHHHHHHHHHHHhhcC-CeEEEEEcchhhccCC--------
Confidence              47999999986431      122333 788999999999988752     233 4689999997654311        


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCccc
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEY  225 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  225 (331)
                                    +....|+.+|.+.+.+.+.++.+   .+++++.++|+.+.++.... .    .......... ..+
T Consensus       144 --------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-~----~~~~~~~~~~-~~~  203 (239)
T TIGR01831       144 --------------RGQVNYSAAKAGLIGATKALAVELAKRKITVNCIAPGLIDTEMLAE-V----EHDLDEALKT-VPM  203 (239)
T ss_pred             --------------CCCcchHHHHHHHHHHHHHHHHHHhHhCeEEEEEEEccCccccchh-h----hHHHHHHHhc-CCC
Confidence                          11346999999988888877655   37999999999998764321 1    1111111111 111


Q ss_pred             ccCCCccceeHHHHHHHHHHhhcCC
Q 020104          226 GFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       226 ~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                           ..+...+|+++++.+++..+
T Consensus       204 -----~~~~~~~~va~~~~~l~~~~  223 (239)
T TIGR01831       204 -----NRMGQPAEVASLAGFLMSDG  223 (239)
T ss_pred             -----CCCCCHHHHHHHHHHHcCch
Confidence                 14668899999999999754

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=99.77  E-value=1.2e-17  Score=141.00  Aligned_cols=198  Identities=21%  Similarity=0.224  Sum_probs=135.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCC--CCccHHHHh
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLS--HPDGFDAAI   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~--~~~~~~~~~   80 (331)
                      ..++|+||||+|+||.+++++|++.|++|++++|+.     .....+ ..+....  ..++.++.+|+.  +.+++.+++
T Consensus        11 ~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~-----~~~~~~~~~l~~~~--~~~~~~~~~d~~~~~~~~~~~~~   83 (247)
T PRK08945         11 KDRIILVTGAGDGIGREAALTYARHGATVILLGRTE-----EKLEAVYDEIEAAG--GPQPAIIPLDLLTATPQNYQQLA   83 (247)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCH-----HHHHHHHHHHHhcC--CCCceEEEecccCCCHHHHHHHH
Confidence            357899999999999999999999999999999987     222221 1121111  135667778875  444444433


Q ss_pred             -------cCccEEEEecccCCC-------CCCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCC
Q 020104           81 -------AGCTGVLHVATPVDF-------EDKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDK  142 (331)
Q Consensus        81 -------~~~d~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~  142 (331)
                             .++|+|||+|+....       ...++ +..+++|+.++.++++++.    +.+ .++||++||.......  
T Consensus        84 ~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~-~~~~~~n~~g~~~~~~~~~~~l~~~~-~~~iv~~ss~~~~~~~--  159 (247)
T PRK08945         84 DTIEEQFGRLDGVLHNAGLLGELGPMEQQDPEVW-QDVMQVNVNATFMLTQALLPLLLKSP-AASLVFTSSSVGRQGR--  159 (247)
T ss_pred             HHHHHHhCCCCEEEECCcccCCCCCcccCCHHHH-HHHHHHccHHHHHHHHHHHHHHHhCC-CCEEEEEccHhhcCCC--
Confidence                   368999999985431       11123 3788899999888888764    445 6799999996543210  


Q ss_pred             CCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHh
Q 020104          143 DVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALIL  219 (331)
Q Consensus       143 ~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~  219 (331)
                                          +....|+.+|.+.+.+++.++.+.   +++++.++|+.+-++-.....+           
T Consensus       160 --------------------~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~~~~v~pg~v~t~~~~~~~~-----------  208 (247)
T PRK08945        160 --------------------ANWGAYAVSKFATEGMMQVLADEYQGTNLRVNCINPGGTRTAMRASAFP-----------  208 (247)
T ss_pred             --------------------CCCcccHHHHHHHHHHHHHHHHHhcccCEEEEEEecCCccCcchhhhcC-----------
Confidence                                113369999999999999887765   6889999999886652111000           


Q ss_pred             CCCcccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          220 GNREEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       220 ~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      ...       ...+...+|+++++.+++...
T Consensus       209 ~~~-------~~~~~~~~~~~~~~~~~~~~~  232 (247)
T PRK08945        209 GED-------PQKLKTPEDIMPLYLYLMGDD  232 (247)
T ss_pred             ccc-------ccCCCCHHHHHHHHHHHhCcc
Confidence            000       014678899999999988654

>PRK05854 short chain dehydrogenase; Provisional

Probab=99.76  E-value=1.6e-17  Score=144.87  Aligned_cols=182  Identities=20%  Similarity=0.130  Sum_probs=127.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|+++||||||+||.+++++|+++|++|++++|+.     +..+. ...+.+.. ...++.++.+|+.|.++++++++ 
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~-----~~~~~~~~~l~~~~-~~~~v~~~~~Dl~d~~sv~~~~~~   86 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNR-----AKGEAAVAAIRTAV-PDAKLSLRALDLSSLASVAALGEQ   86 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHHhC-CCCceEEEEecCCCHHHHHHHHHH
Confidence            357899999999999999999999999999999987     22211 12221111 11358889999999988887764 


Q ss_pred             ------CccEEEEecccCCCC----CCChhhHHHHHHHHHHHHHHHHHHh---cCCccEEEEecccceeecCCCCCCccc
Q 020104           82 ------GCTGVLHVATPVDFE----DKEPEEVITQRAINGTLGILKSCLK---SGTVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~---~~~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                            ++|++||+||.....    ..+..+..+++|+.+...+.+.+..   .+ ..++|++||..... +......+.
T Consensus        87 ~~~~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~-~~riv~vsS~~~~~-~~~~~~~~~  164 (313)
T PRK05854         87 LRAEGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG-RARVTSQSSIAARR-GAINWDDLN  164 (313)
T ss_pred             HHHhCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC-CCCeEEEechhhcC-CCcCccccc
Confidence                  489999999865421    1123347899999998777776652   23 36899999976543 111111222


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH-----cCCcEEEeccCceeCCC
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE-----HGLDLVTLIPSMVVGPF  202 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~-----~~~~~~ilRp~~v~G~~  202 (331)
                      ++..         ..+...|+.||.+.+.+.+.++.+     .+++++.+.||.+..+-
T Consensus       165 ~~~~---------~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~~  214 (313)
T PRK05854        165 WERS---------YAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTNL  214 (313)
T ss_pred             cccc---------CcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccCc
Confidence            2211         133457999999999999988764     36999999999997653

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.76  E-value=6.7e-17  Score=136.82  Aligned_cols=205  Identities=16%  Similarity=0.118  Sum_probs=140.7

Q ss_pred             CceEEEecCc--chhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            5 KGRVCVTGGT--GFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         5 ~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      +|+++||||+  +.||..++++|++.|++|+++.|+.     ...+.++.+   .  ...+.++.+|+.|++++.++++ 
T Consensus         7 ~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-----~~~~~~~~~---~--~~~~~~~~~Dl~~~~~v~~~~~~   76 (252)
T PRK06079          7 GKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-----RMKKSLQKL---V--DEEDLLVECDVASDESIERAFAT   76 (252)
T ss_pred             CCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-----HHHHHHHhh---c--cCceeEEeCCCCCHHHHHHHHHH
Confidence            4789999999  7999999999999999999998874     222222221   1  1357789999999988877653 


Q ss_pred             ------CccEEEEecccCCC----------CCCChhhHHHHHHHHHHHHHHHHHHhc-CCccEEEEecccceeecCCCCC
Q 020104           82 ------GCTGVLHVATPVDF----------EDKEPEEVITQRAINGTLGILKSCLKS-GTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~----------~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                            ++|++||+|+....          ..+++ +..+++|+.++..+++++... ..-.++|++||.....   .  
T Consensus        77 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~-~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~---~--  150 (252)
T PRK06079         77 IKERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGY-ALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGSER---A--  150 (252)
T ss_pred             HHHHhCCCCEEEEcccccccccccCCcccCCHHHH-HHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCccc---c--
Confidence                  58999999986421          11123 367889999988888877653 1125899999855321   0  


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                                       .+....|+.+|.+.+.+.+.++.+.   +++++.+.||.+-.+..... .. ...........
T Consensus       151 -----------------~~~~~~Y~asKaal~~l~~~la~el~~~gI~vn~i~PG~v~T~~~~~~-~~-~~~~~~~~~~~  211 (252)
T PRK06079        151 -----------------IPNYNVMGIAKAALESSVRYLARDLGKKGIRVNAISAGAVKTLAVTGI-KG-HKDLLKESDSR  211 (252)
T ss_pred             -----------------CCcchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccccccccC-CC-hHHHHHHHHhc
Confidence                             0113479999999999999888764   79999999999977632111 00 01111111111


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                       .+.     ..+...+|+++++.+++...
T Consensus       212 -~p~-----~r~~~pedva~~~~~l~s~~  234 (252)
T PRK06079        212 -TVD-----GVGVTIEEVGNTAAFLLSDL  234 (252)
T ss_pred             -Ccc-----cCCCCHHHHHHHHHHHhCcc
Confidence             111     25778899999999999754

>PRK07578 short chain dehydrogenase; Provisional

Probab=99.76  E-value=7e-17  Score=131.81  Aligned_cols=185  Identities=20%  Similarity=0.168  Sum_probs=136.2

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---C
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---G   82 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---~   82 (331)
                      |+++||||+|.||.++++.|+++ ++|++++|+.                     .   .+.+|+.|.++++++++   +
T Consensus         1 ~~vlItGas~giG~~la~~l~~~-~~vi~~~r~~---------------------~---~~~~D~~~~~~~~~~~~~~~~   55 (199)
T PRK07578          1 MKILVIGASGTIGRAVVAELSKR-HEVITAGRSS---------------------G---DVQVDITDPASIRALFEKVGK   55 (199)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCC---------------------C---ceEecCCChHHHHHHHHhcCC
Confidence            37999999999999999999999 9999999876                     1   36789999998888876   6


Q ss_pred             ccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhc--CCccEEEEecccceeecCCCCCCcccCCCCCC
Q 020104           83 CTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKS--GTVKRVVYTSSNAAVFYNDKDVDMMDETFWSD  154 (331)
Q Consensus        83 ~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~  154 (331)
                      +|+|||+|+.....      ..++ ...+++|+.++.++++++...  + ..+++++||.....  .             
T Consensus        56 id~lv~~ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~-~g~iv~iss~~~~~--~-------------  118 (199)
T PRK07578         56 VDAVVSAAGKVHFAPLAEMTDEDF-NVGLQSKLMGQVNLVLIGQHYLND-GGSFTLTSGILSDE--P-------------  118 (199)
T ss_pred             CCEEEECCCCCCCCchhhCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhc-CCeEEEEcccccCC--C-------------
Confidence            89999999864321      1123 367889999999999987653  2 35799999855331  0             


Q ss_pred             hhhhhhcCCCCchhHhhHHHHHHHHHHHHHH--cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCcc
Q 020104          155 VDYIRKLDSWGKSYAISKTLTERAALEFAEE--HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTS  232 (331)
Q Consensus       155 ~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~--~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (331)
                             .+....|+.+|...+.+.+.++.+  .+++++.+.||.+-.+..         ..     +.  .+.   ...
T Consensus       119 -------~~~~~~Y~~sK~a~~~~~~~la~e~~~gi~v~~i~Pg~v~t~~~---------~~-----~~--~~~---~~~  172 (199)
T PRK07578        119 -------IPGGASAATVNGALEGFVKAAALELPRGIRINVVSPTVLTESLE---------KY-----GP--FFP---GFE  172 (199)
T ss_pred             -------CCCchHHHHHHHHHHHHHHHHHHHccCCeEEEEEcCCcccCchh---------hh-----hh--cCC---CCC
Confidence                   011347999999999999988775  489999999998743310         00     00  010   124


Q ss_pred             ceeHHHHHHHHHHhhcCCCCCceEEE
Q 020104          233 MVHVDDVARAHIFLLEYPDAKGRYIC  258 (331)
Q Consensus       233 ~i~v~D~a~~~~~~~~~~~~~~~~~~  258 (331)
                      ++..+|+|++++.++.....++.+++
T Consensus       173 ~~~~~~~a~~~~~~~~~~~~g~~~~~  198 (199)
T PRK07578        173 PVPAARVALAYVRSVEGAQTGEVYKV  198 (199)
T ss_pred             CCCHHHHHHHHHHHhccceeeEEecc
Confidence            68999999999999987655555543

>PRK06940 short chain dehydrogenase; Provisional

Probab=99.76  E-value=8e-17  Score=138.07  Aligned_cols=239  Identities=18%  Similarity=0.198  Sum_probs=146.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      |+|.++|||| |+||+++++.|. +|++|++++|+.     ...+.. +.+..   ...++.++.+|+.|.+++.++++ 
T Consensus         1 ~~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~-----~~~~~~~~~l~~---~~~~~~~~~~Dv~d~~~i~~~~~~   70 (275)
T PRK06940          1 MKEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNE-----ENLEAAAKTLRE---AGFDVSTQEVDVSSRESVKALAAT   70 (275)
T ss_pred             CCCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCH-----HHHHHHHHHHHh---cCCeEEEEEeecCCHHHHHHHHHH
Confidence            3568999997 799999999996 799999999976     222111 11111   12367889999999988887764 


Q ss_pred             -----CccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhc-CCccEEEEecccceeecCC---CCCCcc---cC
Q 020104           82 -----GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKS-GTVKRVVYTSSNAAVFYND---KDVDMM---DE  149 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~---~~~~~~---~E  149 (331)
                           ++|++||+||.... ..++. ..+++|+.++.++++++... ..-.++|++||........   ......   +.
T Consensus        71 ~~~~g~id~li~nAG~~~~-~~~~~-~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~  148 (275)
T PRK06940         71 AQTLGPVTGLVHTAGVSPS-QASPE-AILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHRLPALTAEQERALATTPT  148 (275)
T ss_pred             HHhcCCCCEEEECCCcCCc-hhhHH-HHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccccCcccchhhhcccccccc
Confidence                 58999999996532 23454 89999999999999988754 1013567788765432110   000001   11


Q ss_pred             CCCCChhhhhh--cCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcc
Q 020104          150 TFWSDVDYIRK--LDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREE  224 (331)
Q Consensus       150 ~~~~~~~~~~~--~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~  224 (331)
                      ++........+  ...+...|+.+|.+.+.+.+.++.+.   +++++.+.||.+..+.................... ..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~-~p  227 (275)
T PRK06940        149 EELLSLPFLQPDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIISTPLAQDELNGPRGDGYRNMFAK-SP  227 (275)
T ss_pred             ccccccccccccccCCccchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCcCccchhhhcCCchHHHHHHhhh-CC
Confidence            11000000000  00123579999999999988877654   79999999999987642111100000001111111 11


Q ss_pred             cccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEec
Q 020104          225 YGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSS  260 (331)
Q Consensus       225 ~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~  260 (331)
                      +     ..+...+|+|+++.+++....  ..| .+.+.+
T Consensus       228 ~-----~r~~~peeia~~~~fL~s~~~~~itG~~i~vdg  261 (275)
T PRK06940        228 A-----GRPGTPDEIAALAEFLMGPRGSFITGSDFLVDG  261 (275)
T ss_pred             c-----ccCCCHHHHHHHHHHHcCcccCcccCceEEEcC
Confidence            1     257889999999999986533  234 444544

>PRK07832 short chain dehydrogenase; Provisional

Probab=99.76  E-value=4.4e-17  Score=139.62  Aligned_cols=207  Identities=17%  Similarity=0.197  Sum_probs=137.0

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      |+++||||+|.||.++++.|+++|++|++++|+.     +..+. .+.+....  ...+.++.+|+.|++++.++++   
T Consensus         1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~-----~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~   73 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDA-----DGLAQTVADARALG--GTVPEHRALDISDYDAVAAFAADIH   73 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHhcC--CCcceEEEeeCCCHHHHHHHHHHHH
Confidence            4799999999999999999999999999999876     22111 11111111  1234567899999987776654   


Q ss_pred             ----CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCCcc
Q 020104           82 ----GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 ----~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                          ++|+|||+||.....      .++. +..+++|+.++.++++++..    .+...++|++||...+. +       
T Consensus        74 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~-~-------  144 (272)
T PRK07832         74 AAHGSMDVVMNIAGISAWGTVDRLTHEQW-RRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLV-A-------  144 (272)
T ss_pred             HhcCCCCEEEECCCCCCCCccccCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccC-C-------
Confidence                489999999864321      1122 37889999999999998742    22136899999965431 1       


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCcc---HHHHHHHHhCC
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGS---VRSSLALILGN  221 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~---~~~~~~~~~~~  221 (331)
                                    .+....|+.+|.+.+.+.+.++.+   +++++++++||.+.++.........   ...........
T Consensus       145 --------------~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~  210 (272)
T PRK07832        145 --------------LPWHAAYSASKFGLRGLSEVLRFDLARHGIGVSVVVPGAVKTPLVNTVEIAGVDREDPRVQKWVDR  210 (272)
T ss_pred             --------------CCCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhcccccccCcchhhHHHHHHh
Confidence                          011346999999888777766643   4899999999999987532210000   00000000000


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcC
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEY  249 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~  249 (331)
                         +    ....+..+|+|++++.++.+
T Consensus       211 ---~----~~~~~~~~~vA~~~~~~~~~  231 (272)
T PRK07832        211 ---F----RGHAVTPEKAAEKILAGVEK  231 (272)
T ss_pred             ---c----ccCCCCHHHHHHHHHHHHhc
Confidence               0    01457999999999999964

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.75  E-value=6e-17  Score=138.54  Aligned_cols=222  Identities=13%  Similarity=0.111  Sum_probs=146.2

Q ss_pred             CCCCCceEEEecCc--chhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHH
Q 020104            1 MEEGKGRVCVTGGT--GFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDA   78 (331)
Q Consensus         1 M~~~~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~   78 (331)
                      |...+|+++||||+  +.||.++++.|++.|++|+++.|+.     ...+.++.+.+...  .. .++.+|+.|.+++.+
T Consensus         1 ~~l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~-----~~~~~~~~~~~~~~--~~-~~~~~Dv~d~~~v~~   72 (274)
T PRK08415          1 MIMKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNE-----ALKKRVEPIAQELG--SD-YVYELDVSKPEHFKS   72 (274)
T ss_pred             CccCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCH-----HHHHHHHHHHHhcC--Cc-eEEEecCCCHHHHHH
Confidence            66667899999997  7999999999999999999998874     22222222211111  12 578999999988877


Q ss_pred             Hhc-------CccEEEEecccCCC----------CCCChhhHHHHHHHHHHHHHHHHHHhc-CCccEEEEecccceeecC
Q 020104           79 AIA-------GCTGVLHVATPVDF----------EDKEPEEVITQRAINGTLGILKSCLKS-GTVKRVVYTSSNAAVFYN  140 (331)
Q Consensus        79 ~~~-------~~d~Vih~a~~~~~----------~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~  140 (331)
                      +++       ++|++||+||....          ..+++ +..+++|+.++..+.+++... ..-.++|++||.....  
T Consensus        73 ~~~~i~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~~--  149 (274)
T PRK08415         73 LAESLKKDLGKIDFIVHSVAFAPKEALEGSFLETSKEAF-NIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGGVK--  149 (274)
T ss_pred             HHHHHHHHcCCCCEEEECCccCcccccccccccCCHHHH-HHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCCcc--
Confidence            663       58999999986421          11123 378899999998888877643 1125899999854321  


Q ss_pred             CCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHH
Q 020104          141 DKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLAL  217 (331)
Q Consensus       141 ~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~  217 (331)
                       .                   .+....|+.+|.+.+.+.+.++.+.   +++++.+.||.+..+.... ... .......
T Consensus       150 -~-------------------~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~-~~~-~~~~~~~  207 (274)
T PRK08415        150 -Y-------------------VPHYNVMGVAKAALESSVRYLAVDLGKKGIRVNAISAGPIKTLAASG-IGD-FRMILKW  207 (274)
T ss_pred             -C-------------------CCcchhhhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHhc-cch-hhHHhhh
Confidence             0                   0113469999999999999888754   7999999999997652111 000 0000000


Q ss_pred             HhCCCcccccCCCccceeHHHHHHHHHHhhcCCC--CCce-EEEecc
Q 020104          218 ILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKGR-YICSSH  261 (331)
Q Consensus       218 ~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~  261 (331)
                      .. ...+.     ..+...+|++.++++++....  ..|. +.+.+.
T Consensus       208 ~~-~~~pl-----~r~~~pedva~~v~fL~s~~~~~itG~~i~vdGG  248 (274)
T PRK08415        208 NE-INAPL-----KKNVSIEEVGNSGMYLLSDLSSGVTGEIHYVDAG  248 (274)
T ss_pred             hh-hhCch-----hccCCHHHHHHHHHHHhhhhhhcccccEEEEcCc
Confidence            00 01111     256788999999999997532  3443 445443

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.75  E-value=7.1e-17  Score=140.46  Aligned_cols=202  Identities=17%  Similarity=0.138  Sum_probs=135.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|+++||||+|+||++++++|+++|++|++.+|+..    ...+. ...+..   ...++..+.+|+.|.+++.++++ 
T Consensus        11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~----~~~~~~~~~i~~---~g~~~~~~~~Dv~d~~~~~~~~~~   83 (306)
T PRK07792         11 SGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASA----LDASDVLDEIRA---AGAKAVAVAGDISQRATADELVAT   83 (306)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCch----hHHHHHHHHHHh---cCCeEEEEeCCCCCHHHHHHHHHH
Confidence            4578999999999999999999999999999887541    11111 111111   12467889999999988877664 


Q ss_pred             -----CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhc--------C--CccEEEEecccceeecC
Q 020104           82 -----GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKS--------G--TVKRVVYTSSNAAVFYN  140 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~--------~--~~~~~v~~SS~~~~~~~  140 (331)
                           ++|+|||+|+.....      ..++. ..+++|+.++.++++++...        +  ...++|++||...+...
T Consensus        84 ~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~-~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~  162 (306)
T PRK07792         84 AVGLGGLDIVVNNAGITRDRMLFNMSDEEWD-AVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLVGP  162 (306)
T ss_pred             HHHhCCCCEEEECCCCCCCCCcccCCHHHHH-HHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCcccccCC
Confidence                 589999999865421      12233 68899999999999876521        0  02489999997654211


Q ss_pred             CCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHH
Q 020104          141 DKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLAL  217 (331)
Q Consensus       141 ~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~  217 (331)
                                            +....|+.+|.+.+.+++.++.+   ++++++.+.|+.  ........   +      
T Consensus       163 ----------------------~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~i~Pg~--~t~~~~~~---~------  209 (306)
T PRK07792        163 ----------------------VGQANYGAAKAGITALTLSAARALGRYGVRANAICPRA--RTAMTADV---F------  209 (306)
T ss_pred             ----------------------CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEECCCC--CCchhhhh---c------
Confidence                                  11236999999999999888765   489999999972  11110000   0      


Q ss_pred             HhCCCcccccCCCccceeHHHHHHHHHHhhcC
Q 020104          218 ILGNREEYGFLLNTSMVHVDDVARAHIFLLEY  249 (331)
Q Consensus       218 ~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~  249 (331)
                       .......  ......+..+|++.++.+++..
T Consensus       210 -~~~~~~~--~~~~~~~~pe~va~~v~~L~s~  238 (306)
T PRK07792        210 -GDAPDVE--AGGIDPLSPEHVVPLVQFLASP  238 (306)
T ss_pred             -cccchhh--hhccCCCCHHHHHHHHHHHcCc
Confidence             0000000  0112456899999999998865

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.75  E-value=1.1e-16  Score=136.83  Aligned_cols=217  Identities=15%  Similarity=0.068  Sum_probs=143.1

Q ss_pred             CceEEEecCcc--hhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            5 KGRVCVTGGTG--FIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         5 ~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      +|++|||||++  .||++++++|++.|++|++..|+.     ...+..+.+.+..   .....+.+|+.|.+++.++++ 
T Consensus         7 ~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~-----~~~~~~~~~~~~~---g~~~~~~~Dv~d~~~v~~~~~~   78 (271)
T PRK06505          7 GKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGE-----ALGKRVKPLAESL---GSDFVLPCDVEDIASVDAVFEA   78 (271)
T ss_pred             CCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCch-----HHHHHHHHHHHhc---CCceEEeCCCCCHHHHHHHHHH
Confidence            46899999997  999999999999999999988865     2222222221110   123468899999988887763 


Q ss_pred             ------CccEEEEecccCCC----------CCCChhhHHHHHHHHHHHHHHHHHHhc-CCccEEEEecccceeecCCCCC
Q 020104           82 ------GCTGVLHVATPVDF----------EDKEPEEVITQRAINGTLGILKSCLKS-GTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~----------~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                            ++|++||+||....          ..+++. ..+++|+.++..+++++... ..-.++|++||..... +    
T Consensus        79 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~-~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~~-~----  152 (271)
T PRK06505         79 LEKKWGKLDFVVHAIGFSDKNELKGRYADTTRENFS-RTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGSTR-V----  152 (271)
T ss_pred             HHHHhCCCCEEEECCccCCCccccCChhhcCHHHHH-HHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCccc-c----
Confidence                  58999999986421          112233 67889999988888776542 1125899999965431 0    


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                                       .+....|+.+|.+.+.+.+.++.+.   +++++.+.||.+-.+.... .... ......... 
T Consensus       153 -----------------~~~~~~Y~asKaAl~~l~r~la~el~~~gIrVn~v~PG~i~T~~~~~-~~~~-~~~~~~~~~-  212 (271)
T PRK06505        153 -----------------MPNYNVMGVAKAALEASVRYLAADYGPQGIRVNAISAGPVRTLAGAG-IGDA-RAIFSYQQR-  212 (271)
T ss_pred             -----------------CCccchhhhhHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccc-Ccch-HHHHHHHhh-
Confidence                             0113469999999999999888764   7999999999997753211 1110 001111111 


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCC--CCce-EEEec
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKGR-YICSS  260 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~  260 (331)
                      ...++     .+...+|+++++++++....  ..|. ..+.+
T Consensus       213 ~~p~~-----r~~~peeva~~~~fL~s~~~~~itG~~i~vdg  249 (271)
T PRK06505        213 NSPLR-----RTVTIDEVGGSALYLLSDLSSGVTGEIHFVDS  249 (271)
T ss_pred             cCCcc-----ccCCHHHHHHHHHHHhCccccccCceEEeecC
Confidence            11111     46688999999999987543  2343 44544

>PRK07831 short chain dehydrogenase; Provisional

Probab=99.75  E-value=1.1e-16  Score=136.54  Aligned_cols=208  Identities=21%  Similarity=0.168  Sum_probs=141.7

Q ss_pred             CceEEEecCcc-hhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            5 KGRVCVTGGTG-FIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         5 ~~~ilVtGatG-~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      +++++||||+| .||+++++.|+++|++|++++|+.     ...+. ...+.+.. ...++..+.+|+.+.+++.++++ 
T Consensus        17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~   90 (262)
T PRK07831         17 GKVVLVTAAAGTGIGSATARRALEEGARVVISDIHE-----RRLGETADELAAEL-GLGRVEAVVCDVTSEAQVDALIDA   90 (262)
T ss_pred             CCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCH-----HHHHHHHHHHHHhc-CCceEEEEEccCCCHHHHHHHHHH
Confidence            47899999998 699999999999999999998876     22211 11111100 01357889999999988877664 


Q ss_pred             ------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|+|||+|+.....      ..++. ..+++|+.++..+++++...    +...++|++||...+.  .    
T Consensus        91 ~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~-~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~~--~----  163 (262)
T PRK07831         91 AVERLGRLDVLVNNAGLGGQTPVVDMTDDEWS-RVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGWR--A----  163 (262)
T ss_pred             HHHHcCCCCEEEECCCCCCCCCcccCCHHHHH-HHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcC--C----
Confidence                  579999999854311      11233 67889999998888876542    1135888888854331  0    


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                      .++...|+.+|.+.+.+++.++.+   ++++++.++|+.+..+.......   .......... 
T Consensus       164 ----------------~~~~~~Y~~sKaal~~~~~~la~e~~~~gI~v~~i~Pg~~~t~~~~~~~~---~~~~~~~~~~-  223 (262)
T PRK07831        164 ----------------QHGQAHYAAAKAGVMALTRCSALEAAEYGVRINAVAPSIAMHPFLAKVTS---AELLDELAAR-  223 (262)
T ss_pred             ----------------CCCCcchHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccCcccccccC---HHHHHHHHhc-
Confidence                            012346999999999999998876   47999999999998874321111   1111111111 


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      ..+.     .+...+|+++++++++...
T Consensus       224 ~~~~-----r~~~p~~va~~~~~l~s~~  246 (262)
T PRK07831        224 EAFG-----RAAEPWEVANVIAFLASDY  246 (262)
T ss_pred             CCCC-----CCcCHHHHHHHHHHHcCch
Confidence            1222     5678899999999998764

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=99.75  E-value=1.7e-16  Score=135.60  Aligned_cols=206  Identities=17%  Similarity=0.120  Sum_probs=133.7

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHH----HHh
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFD----AAI   80 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~----~~~   80 (331)
                      +.++||||+|+||++++++|+++|++|+++.|+..    .....+ ..+...  ...++.++.+|+.|.+++.    +++
T Consensus         2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~~----~~~~~~~~~l~~~--~~~~~~~~~~Dv~d~~~~~~~~~~~~   75 (267)
T TIGR02685         2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSA----AAASTLAAELNAR--RPNSAVTCQADLSNSATLFSRCEAII   75 (267)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCcH----HHHHHHHHHHHhc--cCCceEEEEccCCCchhhHHHHHHHH
Confidence            47999999999999999999999999999876541    111111 111110  1134667899999987553    332


Q ss_pred             -------cCccEEEEecccCCCC---CCC-------------hhhHHHHHHHHHHHHHHHHHHhcC---------CccEE
Q 020104           81 -------AGCTGVLHVATPVDFE---DKE-------------PEEVITQRAINGTLGILKSCLKSG---------TVKRV  128 (331)
Q Consensus        81 -------~~~d~Vih~a~~~~~~---~~~-------------~~~~~~~~n~~~~~~l~~~~~~~~---------~~~~~  128 (331)
                             .++|+|||+||.....   ..+             .....+++|+.++..+.+++....         ...++
T Consensus        76 ~~~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~i  155 (267)
T TIGR02685        76 DACFRAFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSI  155 (267)
T ss_pred             HHHHHccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEE
Confidence                   2589999999854311   001             122678999999998888764321         12367


Q ss_pred             EEecccceeecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCC
Q 020104          129 VYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICP  205 (331)
Q Consensus       129 v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~  205 (331)
                      |++||.....       +               .++..+|+.+|.+.+.+++.++.+   .+++++.++||.+..+...+
T Consensus       156 v~~~s~~~~~-------~---------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~~~~~~~~~  213 (267)
T TIGR02685       156 VNLCDAMTDQ-------P---------------LLGFTMYTMAKHALEGLTRSAALELAPLQIRVNGVAPGLSLLPDAMP  213 (267)
T ss_pred             EEehhhhccC-------C---------------CcccchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCccCccccc
Confidence            7777743221       0               122457999999999999998776   48999999999987653221


Q ss_pred             CCCccHHHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          206 KFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                         ...   ...... ...+.    ..+...+|+++++++++...
T Consensus       214 ---~~~---~~~~~~-~~~~~----~~~~~~~~va~~~~~l~~~~  247 (267)
T TIGR02685       214 ---FEV---QEDYRR-KVPLG----QREASAEQIADVVIFLVSPK  247 (267)
T ss_pred             ---hhH---HHHHHH-hCCCC----cCCCCHHHHHHHHHHHhCcc
Confidence               111   111111 11111    14568999999999998754

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=99.74  E-value=1.3e-16  Score=135.58  Aligned_cols=211  Identities=12%  Similarity=0.038  Sum_probs=139.9

Q ss_pred             CCceEEEecCc--chhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGGT--GFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      ++|+++||||+  +.||.+++++|++.|++|++..|+....  ...+.++.+.+.   ...+.++.+|+.|++++.++++
T Consensus         5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~v~~~~~   79 (258)
T PRK07370          5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKG--RFEKKVRELTEP---LNPSLFLPCDVQDDAQIEETFE   79 (258)
T ss_pred             CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccc--hHHHHHHHHHhc---cCcceEeecCcCCHHHHHHHHH
Confidence            45789999986  7999999999999999999887764100  011122222211   1245688999999998887664


Q ss_pred             -------CccEEEEecccCCC-------C---CCChhhHHHHHHHHHHHHHHHHHHhc-CCccEEEEecccceeecCCCC
Q 020104           82 -------GCTGVLHVATPVDF-------E---DKEPEEVITQRAINGTLGILKSCLKS-GTVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        82 -------~~d~Vih~a~~~~~-------~---~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~  143 (331)
                             ++|++||+|+....       .   .+++ +..+++|+.++..+++++... ..-.++|++||.....   . 
T Consensus        80 ~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~-~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~~~---~-  154 (258)
T PRK07370         80 TIKQKWGKLDILVHCLAFAGKEELIGDFSATSREGF-ARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGGVR---A-  154 (258)
T ss_pred             HHHHHcCCCCEEEEcccccCcccccCcchhhCHHHH-HHHheeeeHHHHHHHHHHHHHHhhCCeEEEEecccccc---C-
Confidence                   58999999986421       1   1122 378889999988888876542 1125899999954321   0 


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhC
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILG  220 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~  220 (331)
                                        .+....|+.+|.+.+.+.+.++.+.   +++++.+.||.+-.+.... ... ..........
T Consensus       155 ------------------~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~i~PG~v~T~~~~~-~~~-~~~~~~~~~~  214 (258)
T PRK07370        155 ------------------IPNYNVMGVAKAALEASVRYLAAELGPKNIRVNAISAGPIRTLASSA-VGG-ILDMIHHVEE  214 (258)
T ss_pred             ------------------CcccchhhHHHHHHHHHHHHHHHHhCcCCeEEEEEecCcccCchhhc-ccc-chhhhhhhhh
Confidence                              0113469999999999999988765   6999999999997653211 000 0011111111


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                       ...+     ..+...+|++.++.+++..+
T Consensus       215 -~~p~-----~r~~~~~dva~~~~fl~s~~  238 (258)
T PRK07370        215 -KAPL-----RRTVTQTEVGNTAAFLLSDL  238 (258)
T ss_pred             -cCCc-----CcCCCHHHHHHHHHHHhChh
Confidence             1111     25678899999999999754

>PRK05884 short chain dehydrogenase; Provisional

Probab=99.74  E-value=1.3e-16  Score=132.53  Aligned_cols=184  Identities=14%  Similarity=0.090  Sum_probs=133.2

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc----
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA----   81 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----   81 (331)
                      |+++||||+|.||+++++.|+++|++|++++|+.     +......  .+     .++..+.+|+.|.+++.++++    
T Consensus         1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~-----~~~~~~~--~~-----~~~~~~~~D~~~~~~v~~~~~~~~~   68 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARR-----DDLEVAA--KE-----LDVDAIVCDNTDPASLEEARGLFPH   68 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHH--Hh-----ccCcEEecCCCCHHHHHHHHHHHhh
Confidence            3799999999999999999999999999999986     2221111  11     135678899999998888775    


Q ss_pred             CccEEEEecccCC----C-------CCCChhhHHHHHHHHHHHHHHHHHHhc-CCccEEEEecccceeecCCCCCCcccC
Q 020104           82 GCTGVLHVATPVD----F-------EDKEPEEVITQRAINGTLGILKSCLKS-GTVKRVVYTSSNAAVFYNDKDVDMMDE  149 (331)
Q Consensus        82 ~~d~Vih~a~~~~----~-------~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~~~~~E  149 (331)
                      ++|++||+|+...    .       ...++ +..+++|+.++..+++++... ..-.++|++||.. .            
T Consensus        69 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~-~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~-~------------  134 (223)
T PRK05884         69 HLDTIVNVPAPSWDAGDPRTYSLADTANAW-RNALDATVLSAVLTVQSVGDHLRSGGSIISVVPEN-P------------  134 (223)
T ss_pred             cCcEEEECCCccccCCCCcccchhcCHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCC-C------------
Confidence            5899999997421    0       11223 378899999999999988653 1125899999854 0            


Q ss_pred             CCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccc
Q 020104          150 TFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYG  226 (331)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (331)
                                   +....|+.+|.+.+.+++.++.++   +++++.+.||.+..+..            ... .. .   
T Consensus       135 -------------~~~~~Y~asKaal~~~~~~la~e~~~~gI~v~~v~PG~v~t~~~------------~~~-~~-~---  184 (223)
T PRK05884        135 -------------PAGSAEAAIKAALSNWTAGQAAVFGTRGITINAVACGRSVQPGY------------DGL-SR-T---  184 (223)
T ss_pred             -------------CCccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccCchhh------------hhc-cC-C---
Confidence                         012369999999999999887754   79999999998865421            000 00 0   


Q ss_pred             cCCCccceeHHHHHHHHHHhhcCC
Q 020104          227 FLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       227 ~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                           +....+|+++++.+++...
T Consensus       185 -----p~~~~~~ia~~~~~l~s~~  203 (223)
T PRK05884        185 -----PPPVAAEIARLALFLTTPA  203 (223)
T ss_pred             -----CCCCHHHHHHHHHHHcCch
Confidence                 1127899999999998753

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.74  E-value=3.6e-16  Score=132.73  Aligned_cols=211  Identities=15%  Similarity=0.068  Sum_probs=137.2

Q ss_pred             CCceEEEecCcc--hhHHHHHHHHHHCCCeEEEEecCCCCcc---cCCccccccc-cCCCCCCCcEEEEeCCCCCCccHH
Q 020104            4 GKGRVCVTGGTG--FIASWLIMRLLDHGYSVTTTVRSELDPE---HRNSKDLSFL-KNLPGASERLRIFHADLSHPDGFD   77 (331)
Q Consensus         4 ~~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~D~~~~~~~~   77 (331)
                      ++|+||||||+|  .||.+++++|+++|++|+++.|......   .........+ .++.....++.++.+|+.|.+++.
T Consensus         5 ~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i~   84 (256)
T PRK12859          5 KNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAPK   84 (256)
T ss_pred             CCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHH
Confidence            357899999995  7999999999999999998765321000   0001111111 111112246788999999999888


Q ss_pred             HHhc-------CccEEEEecccCCCC---CCC--hhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCC
Q 020104           78 AAIA-------GCTGVLHVATPVDFE---DKE--PEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYND  141 (331)
Q Consensus        78 ~~~~-------~~d~Vih~a~~~~~~---~~~--~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~  141 (331)
                      +++.       .+|+|||+|+.....   ..+  ..+..+++|+.++..+.+++    ++.+ ..++|++||......  
T Consensus        85 ~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~--  161 (256)
T PRK12859         85 ELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKS-GGRIINMTSGQFQGP--  161 (256)
T ss_pred             HHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEEcccccCCC--
Confidence            7764       479999999864321   111  12367889999887775444    3333 469999999654310  


Q ss_pred             CCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHH
Q 020104          142 KDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALI  218 (331)
Q Consensus       142 ~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~  218 (331)
                                          .++...|+.+|.+.+.+.+.++.+   ++++++.++||.+-.+...    ..   .....
T Consensus       162 --------------------~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~PG~i~t~~~~----~~---~~~~~  214 (256)
T PRK12859        162 --------------------MVGELAYAATKGAIDALTSSLAAEVAHLGITVNAINPGPTDTGWMT----EE---IKQGL  214 (256)
T ss_pred             --------------------CCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEEccccCCCCC----HH---HHHHH
Confidence                                112347999999999999888765   4799999999988665311    11   11111


Q ss_pred             hCCCcccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          219 LGNREEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       219 ~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      .. ...+     ..+...+|+++++.+++...
T Consensus       215 ~~-~~~~-----~~~~~~~d~a~~~~~l~s~~  240 (256)
T PRK12859        215 LP-MFPF-----GRIGEPKDAARLIKFLASEE  240 (256)
T ss_pred             Hh-cCCC-----CCCcCHHHHHHHHHHHhCcc
Confidence            11 1111     14567899999999988654

>PRK08177 short chain dehydrogenase; Provisional

Probab=99.74  E-value=5.8e-17  Score=134.92  Aligned_cols=166  Identities=19%  Similarity=0.191  Sum_probs=120.2

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      |++++||||+|+||++++++|+++|++|++++|++     .....+.   +.    .++.++.+|+.|.+++.++++   
T Consensus         1 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~-----~~~~~~~---~~----~~~~~~~~D~~d~~~~~~~~~~~~   68 (225)
T PRK08177          1 KRTALIIGASRGLGLGLVDRLLERGWQVTATVRGP-----QQDTALQ---AL----PGVHIEKLDMNDPASLDQLLQRLQ   68 (225)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCC-----cchHHHH---hc----cccceEEcCCCCHHHHHHHHHHhh
Confidence            36899999999999999999999999999999987     2222222   11    356778899999988877765   


Q ss_pred             --CccEEEEecccCCCC--------CCChhhHHHHHHHHHHHHHHHHHHhcC--CccEEEEecccceeecCCCCCCcccC
Q 020104           82 --GCTGVLHVATPVDFE--------DKEPEEVITQRAINGTLGILKSCLKSG--TVKRVVYTSSNAAVFYNDKDVDMMDE  149 (331)
Q Consensus        82 --~~d~Vih~a~~~~~~--------~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~E  149 (331)
                        ++|+|||+|+.....        ..+. ...+++|+.++..+++++...-  ...+++++||....  ...  .+   
T Consensus        69 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~~g~--~~~--~~---  140 (225)
T PRK08177         69 GQRFDLLFVNAGISGPAHQSAADATAAEI-GQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQLGS--VEL--PD---  140 (225)
T ss_pred             cCCCCEEEEcCcccCCCCCCcccCCHHHH-hhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccCccc--ccc--CC---
Confidence              589999999865321        1122 3567789999888888776431  13578888874221  100  00   


Q ss_pred             CCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCC
Q 020104          150 TFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPF  202 (331)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~  202 (331)
                                  ..+...|+.+|.+.+.+++.++.+.   +++++.++||.+-.+.
T Consensus       141 ------------~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~i~PG~i~t~~  184 (225)
T PRK08177        141 ------------GGEMPLYKASKAALNSMTRSFVAELGEPTLTVLSMHPGWVKTDM  184 (225)
T ss_pred             ------------CCCccchHHHHHHHHHHHHHHHHHhhcCCeEEEEEcCCceecCC
Confidence                        0112369999999999999887653   6899999999997664

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.73  E-value=4e-16  Score=132.43  Aligned_cols=221  Identities=14%  Similarity=0.078  Sum_probs=144.0

Q ss_pred             CCceEEEecCc--chhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGGT--GFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      .+|+++||||+  +.||.++++.|++.|++|+++.|+.     ...+.++.+.+... ..++.++.+|+.|++++.++++
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~-----~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~   79 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGE-----RLEKEVRELADTLE-GQESLLLPCDVTSDEEITACFE   79 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcc-----cchHHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHH
Confidence            35789999997  8999999999999999999988764     22233332221111 2467889999999988877663


Q ss_pred             -------CccEEEEecccCCC-------CCCCh--hhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCCC
Q 020104           82 -------GCTGVLHVATPVDF-------EDKEP--EEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 -------~~d~Vih~a~~~~~-------~~~~~--~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~  144 (331)
                             ++|++||+|+....       ...+.  ....+++|+.++..+.+++...- .-.++|++||.....   .  
T Consensus        80 ~~~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~---~--  154 (257)
T PRK08594         80 TIKEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGER---V--  154 (257)
T ss_pred             HHHHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCcc---C--
Confidence                   48999999985421       11111  12567889998888777766431 125899999965431   0  


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                                       .+....|+.+|.+.+.+.+.++.+.   +++++.+.||.+..+.... ... .......... 
T Consensus       155 -----------------~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~-~~~-~~~~~~~~~~-  214 (257)
T PRK08594        155 -----------------VQNYNVMGVAKASLEASVKYLANDLGKDGIRVNAISAGPIRTLSAKG-VGG-FNSILKEIEE-  214 (257)
T ss_pred             -----------------CCCCchhHHHHHHHHHHHHHHHHHhhhcCCEEeeeecCcccCHhHhh-hcc-ccHHHHHHhh-
Confidence                             0113469999999999999888654   7999999999987652110 000 0000111111 


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCC--CCce-EEEec
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKGR-YICSS  260 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~  260 (331)
                      ....     ..+...+|+++++++++....  ..|. +.+.+
T Consensus       215 ~~p~-----~r~~~p~~va~~~~~l~s~~~~~~tG~~~~~dg  251 (257)
T PRK08594        215 RAPL-----RRTTTQEEVGDTAAFLFSDLSRGVTGENIHVDS  251 (257)
T ss_pred             cCCc-----cccCCHHHHHHHHHHHcCcccccccceEEEECC
Confidence            1111     256789999999999987543  2343 34544

>PRK05855 short chain dehydrogenase; Validated

Probab=99.73  E-value=7.4e-17  Score=153.06  Aligned_cols=213  Identities=18%  Similarity=0.117  Sum_probs=142.5

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      ++++|||||+|+||++++++|+++|++|++++|+.     ...+.+...  +.....++.++.+|+.|++++.++++   
T Consensus       315 ~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~-----~~~~~~~~~--~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~  387 (582)
T PRK05855        315 GKLVVVTGAGSGIGRETALAFAREGAEVVASDIDE-----AAAERTAEL--IRAAGAVAHAYRVDVSDADAMEAFAEWVR  387 (582)
T ss_pred             CCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHH--HHhcCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence            46899999999999999999999999999999986     222221111  11112467889999999998887764   


Q ss_pred             ----CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCCcc
Q 020104           82 ----GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 ----~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                          ++|++||+||.....      .++. ...+++|+.++.++++++..    .+.-.++|++||...+...       
T Consensus       388 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~-~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~-------  459 (582)
T PRK05855        388 AEHGVPDIVVNNAGIGMAGGFLDTSAEDW-DRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAPS-------  459 (582)
T ss_pred             HhcCCCcEEEECCccCCCCCcccCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccCC-------
Confidence                489999999875421      1122 36788999999988887543    3312589999998776311       


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCC-CccHHHHHHHHhCC-C
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKF-AGSVRSSLALILGN-R  222 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~-~~~~~~~~~~~~~~-~  222 (331)
                                     +....|+.+|.+.+.+++.++.+.   +++++.+.||.+-.+-..... .............. .
T Consensus       460 ---------------~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~  524 (582)
T PRK05855        460 ---------------RSLPAYATSKAAVLMLSECLRAELAAAGIGVTAICPGFVDTNIVATTRFAGADAEDEARRRGRAD  524 (582)
T ss_pred             ---------------CCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCCCcccchhccccCCcccchhhhHHhhhh
Confidence                           124579999999999888877653   899999999998765322110 00000000000000 0


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD  251 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~  251 (331)
                      ..+.    ...+..+|+|++++.++.++.
T Consensus       525 ~~~~----~~~~~p~~va~~~~~~~~~~~  549 (582)
T PRK05855        525 KLYQ----RRGYGPEKVAKAIVDAVKRNK  549 (582)
T ss_pred             hhcc----ccCCCHHHHHHHHHHHHHcCC
Confidence            0000    123467999999999998754

>PRK06125 short chain dehydrogenase; Provisional

Probab=99.73  E-value=5.4e-17  Score=138.11  Aligned_cols=210  Identities=15%  Similarity=0.105  Sum_probs=140.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|+++||||+|.||.++++.|++.|++|++++|+.     +....+ ..+...  ...++.++.+|+.|.+++.++++ 
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~~~l~~~--~~~~~~~~~~D~~~~~~~~~~~~~   78 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDA-----DALEALAADLRAA--HGVDVAVHALDLSSPEAREQLAAE   78 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH-----HHHHHHHHHHHhh--cCCceEEEEecCCCHHHHHHHHHH
Confidence            457999999999999999999999999999999987     222221 111111  12467889999999998888765 


Q ss_pred             --CccEEEEecccCCC---C---CCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCcccC
Q 020104           82 --GCTGVLHVATPVDF---E---DKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDMMDE  149 (331)
Q Consensus        82 --~~d~Vih~a~~~~~---~---~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~E  149 (331)
                        ++|++||+|+....   .   .+++ ...+++|+.+...+++++.    +.+ ..++|++||.....   .       
T Consensus        79 ~g~id~lv~~ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~iss~~~~~---~-------  146 (259)
T PRK06125         79 AGDIDILVNNAGAIPGGGLDDVDDAAW-RAGWELKVFGYIDLTRLAYPRMKARG-SGVIVNVIGAAGEN---P-------  146 (259)
T ss_pred             hCCCCEEEECCCCCCCCCcccCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEecCccccC---C-------
Confidence              58999999986431   1   1122 3678899999888888763    333 35899999854321   0       


Q ss_pred             CCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCc----c--HHHHHHHHhC
Q 020104          150 TFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAG----S--VRSSLALILG  220 (331)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~----~--~~~~~~~~~~  220 (331)
                                  .+....|+.+|.+.+.+++.++.+   .+++++.+.||.+..+........    .  ......... 
T Consensus       147 ------------~~~~~~y~ask~al~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~-  213 (259)
T PRK06125        147 ------------DADYICGSAGNAALMAFTRALGGKSLDDGVRVVGVNPGPVATDRMLTLLKGRARAELGDESRWQELL-  213 (259)
T ss_pred             ------------CCCchHhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccHHHHHHHHhhhhcccCCHHHHHHHh-
Confidence                        011336899999999999887654   379999999999876631100000    0  000000000 


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      ....+     ..+...+|+++++++++...
T Consensus       214 ~~~~~-----~~~~~~~~va~~~~~l~~~~  238 (259)
T PRK06125        214 AGLPL-----GRPATPEEVADLVAFLASPR  238 (259)
T ss_pred             ccCCc-----CCCcCHHHHHHHHHHHcCch
Confidence            00111     25678999999999998753

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.73  E-value=4.4e-16  Score=132.33  Aligned_cols=208  Identities=14%  Similarity=0.066  Sum_probs=139.5

Q ss_pred             CCceEEEecCc--chhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGGT--GFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      .+|+++||||+  +.||.+++++|++.|++|++++|+.     ...+.+..+.+.   .....++.+|+.|.+++.++++
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~-----~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~   80 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLND-----KARPYVEPLAEE---LDAPIFLPLDVREPGQLEAVFA   80 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCh-----hhHHHHHHHHHh---hccceEEecCcCCHHHHHHHHH
Confidence            45789999998  5999999999999999999999875     222222222111   1234578899999988877653


Q ss_pred             -------CccEEEEecccCCC----------CCCChhhHHHHHHHHHHHHHHHHHHhc-CCccEEEEecccceeecCCCC
Q 020104           82 -------GCTGVLHVATPVDF----------EDKEPEEVITQRAINGTLGILKSCLKS-GTVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        82 -------~~d~Vih~a~~~~~----------~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~  143 (331)
                             ++|++||+|+....          ..+++ +..+++|+.++..+++++... ..-.++|++||.....     
T Consensus        81 ~~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~-~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~~-----  154 (258)
T PRK07533         81 RIAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGF-ALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAEK-----  154 (258)
T ss_pred             HHHHHcCCCCEEEEcCccCCcccccCCcccCCHHHH-HHHHhhhhHHHHHHHHHHHHHhccCCEEEEEecccccc-----
Confidence                   58999999986421          11123 378899999999988877543 1125899999854321     


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhC
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILG  220 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~  220 (331)
                        +.               +....|+.+|.+.+.+.+.++.+.   +++++.+.||.+..+-... ... ..........
T Consensus       155 --~~---------------~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~v~PG~v~T~~~~~-~~~-~~~~~~~~~~  215 (258)
T PRK07533        155 --VV---------------ENYNLMGPVKAALESSVRYLAAELGPKGIRVHAISPGPLKTRAASG-IDD-FDALLEDAAE  215 (258)
T ss_pred             --CC---------------ccchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcCChhhhc-cCC-cHHHHHHHHh
Confidence              00               113469999999999998887654   7999999999987653211 000 1111111111


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                       ....     ..+...+|+++++++++...
T Consensus       216 -~~p~-----~r~~~p~dva~~~~~L~s~~  239 (258)
T PRK07533        216 -RAPL-----RRLVDIDDVGAVAAFLASDA  239 (258)
T ss_pred             -cCCc-----CCCCCHHHHHHHHHHHhChh
Confidence             1111     25678899999999998753

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.73  E-value=4e-16  Score=132.74  Aligned_cols=212  Identities=15%  Similarity=0.093  Sum_probs=138.5

Q ss_pred             CCCC-CceEEEecC--cchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHH
Q 020104            1 MEEG-KGRVCVTGG--TGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFD   77 (331)
Q Consensus         1 M~~~-~~~ilVtGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~   77 (331)
                      |..+ +|+++||||  ++.||.++++.|+++|++|++..|..     ...+.++.+...   ......+++|+.|.+++.
T Consensus         1 ~~~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~-----~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~   72 (261)
T PRK08690          1 MGFLQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVD-----KLEERVRKMAAE---LDSELVFRCDVASDDEIN   72 (261)
T ss_pred             CCccCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcH-----HHHHHHHHHHhc---cCCceEEECCCCCHHHHH
Confidence            4433 478999997  67999999999999999999887754     222233322211   123457899999999888


Q ss_pred             HHhc-------CccEEEEecccCCCC--------CCC--hhhHHHHHHHHHHHHHHHHHHhc--CCccEEEEecccceee
Q 020104           78 AAIA-------GCTGVLHVATPVDFE--------DKE--PEEVITQRAINGTLGILKSCLKS--GTVKRVVYTSSNAAVF  138 (331)
Q Consensus        78 ~~~~-------~~d~Vih~a~~~~~~--------~~~--~~~~~~~~n~~~~~~l~~~~~~~--~~~~~~v~~SS~~~~~  138 (331)
                      ++++       ++|++||+||.....        ..+  ..+..+++|+.++..+.+++...  ..-.++|++||.....
T Consensus        73 ~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~~~~~  152 (261)
T PRK08690         73 QVFADLGKHWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVR  152 (261)
T ss_pred             HHHHHHHHHhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEccccccc
Confidence            7763       589999999865321        011  11255778888887777765432  1125899999865431


Q ss_pred             cCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHH
Q 020104          139 YNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSL  215 (331)
Q Consensus       139 ~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~  215 (331)
                         .                   .+....|+.+|.+.+.+.+.++.+   ++++++.+.||.+-.+.... ... .....
T Consensus       153 ---~-------------------~~~~~~Y~asKaal~~l~~~la~e~~~~gIrVn~i~PG~v~T~~~~~-~~~-~~~~~  208 (261)
T PRK08690        153 ---A-------------------IPNYNVMGMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASG-IAD-FGKLL  208 (261)
T ss_pred             ---C-------------------CCCcccchhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccchhhhc-CCc-hHHHH
Confidence               0                   011346999999999998887654   47999999999997653211 100 01111


Q ss_pred             HHHhCCCcccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          216 ALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      ..... ..++     ..+...+|+|+++.+++...
T Consensus       209 ~~~~~-~~p~-----~r~~~peevA~~v~~l~s~~  237 (261)
T PRK08690        209 GHVAA-HNPL-----RRNVTIEEVGNTAAFLLSDL  237 (261)
T ss_pred             HHHhh-cCCC-----CCCCCHHHHHHHHHHHhCcc
Confidence            11111 1122     25778999999999999854

>PRK07201 short chain dehydrogenase; Provisional

Probab=99.72  E-value=1.9e-16  Score=152.24  Aligned_cols=195  Identities=16%  Similarity=0.166  Sum_probs=142.5

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      +|+++||||+|+||.++++.|+++|++|++++|+.     +..+.+ ..+..   ...++.++.+|+.|.+++.++++  
T Consensus       371 ~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~~~~~~~~~  442 (657)
T PRK07201        371 GKVVLITGASSGIGRATAIKVAEAGATVFLVARNG-----EALDELVAEIRA---KGGTAHAYTCDLTDSAAVDHTVKDI  442 (657)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHHh---cCCcEEEEEecCCCHHHHHHHHHHH
Confidence            57899999999999999999999999999999987     222211 11111   12468889999999998887765  


Q ss_pred             -----CccEEEEecccCCCC-----C---CChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCCC
Q 020104           82 -----GCTGVLHVATPVDFE-----D---KEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~-----~---~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                           ++|++||+||.....     .   .+. +..+++|+.++.++.+++    ++.+ ..++|++||...+...    
T Consensus       443 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~~----  516 (657)
T PRK07201        443 LAEHGHVDYLVNNAGRSIRRSVENSTDRFHDY-ERTMAVNYFGAVRLILGLLPHMRERR-FGHVVNVSSIGVQTNA----  516 (657)
T ss_pred             HHhcCCCCEEEECCCCCCCCChhhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHhhhhcC-CCEEEEECChhhcCCC----
Confidence                 589999999864211     0   123 377899999988776665    4445 6799999998776311    


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                                        +....|+.+|.+.+.+++.++.+.   ++++++++||.+..+...+..              
T Consensus       517 ------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~T~~~~~~~--------------  564 (657)
T PRK07201        517 ------------------PRFSAYVASKAALDAFSDVAASETLSDGITFTTIHMPLVRTPMIAPTK--------------  564 (657)
T ss_pred             ------------------CCcchHHHHHHHHHHHHHHHHHHHHhhCCcEEEEECCcCcccccCccc--------------
Confidence                              113479999999999999877654   899999999999876432210              


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                        .+   .....+..+++|+.++..+.+.
T Consensus       565 --~~---~~~~~~~~~~~a~~i~~~~~~~  588 (657)
T PRK07201        565 --RY---NNVPTISPEEAADMVVRAIVEK  588 (657)
T ss_pred             --cc---cCCCCCCHHHHHHHHHHHHHhC
Confidence              00   0114578999999999987653

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.72  E-value=4.3e-16  Score=133.24  Aligned_cols=218  Identities=13%  Similarity=0.047  Sum_probs=144.5

Q ss_pred             CceEEEecCc--chhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            5 KGRVCVTGGT--GFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         5 ~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      +|++|||||+  +.||.++++.|++.|++|+++.|+.     ...+.++.+.+.   ......+.+|+.|.++++++++ 
T Consensus        10 ~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~-----~~~~~~~~l~~~---~~~~~~~~~Dl~~~~~v~~~~~~   81 (272)
T PRK08159         10 GKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGD-----ALKKRVEPLAAE---LGAFVAGHCDVTDEASIDAVFET   81 (272)
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCch-----HHHHHHHHHHHh---cCCceEEecCCCCHHHHHHHHHH
Confidence            4789999997  8999999999999999999887764     222223222211   1234578999999998887764 


Q ss_pred             ------CccEEEEecccCCC----------CCCChhhHHHHHHHHHHHHHHHHHHhc-CCccEEEEecccceeecCCCCC
Q 020104           82 ------GCTGVLHVATPVDF----------EDKEPEEVITQRAINGTLGILKSCLKS-GTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~----------~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                            ++|++||+|+....          ...++ +..+++|+.++..+++++... ..-.++|++||.....   .  
T Consensus        82 ~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~-~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~---~--  155 (272)
T PRK08159         82 LEKKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNF-TMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAEK---V--  155 (272)
T ss_pred             HHHhcCCCcEEEECCcccCccccccCcccCCHHHH-HHHHhHHHHHHHHHHHHHHHhcCCCceEEEEecccccc---C--
Confidence                  48999999986431          11123 478899999999999887653 1125899999854321   0  


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                                       .+....|+.+|.+.+.+++.++.+.   +++++.+.||.+..+.... ... ......... .
T Consensus       156 -----------------~p~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~-~~~-~~~~~~~~~-~  215 (272)
T PRK08159        156 -----------------MPHYNVMGVAKAALEASVKYLAVDLGPKNIRVNAISAGPIKTLAASG-IGD-FRYILKWNE-Y  215 (272)
T ss_pred             -----------------CCcchhhhhHHHHHHHHHHHHHHHhcccCeEEEEeecCCcCCHHHhc-CCc-chHHHHHHH-h
Confidence                             0113469999999999999887764   7999999999987642111 110 001111000 0


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCC--CCce-EEEecc
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKGR-YICSSH  261 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~  261 (331)
                      ..++     ..+...+|+++++++++....  ..|. +.+.+.
T Consensus       216 ~~p~-----~r~~~peevA~~~~~L~s~~~~~itG~~i~vdgG  253 (272)
T PRK08159        216 NAPL-----RRTVTIEEVGDSALYLLSDLSRGVTGEVHHVDSG  253 (272)
T ss_pred             CCcc-----cccCCHHHHHHHHHHHhCccccCccceEEEECCC
Confidence            1111     156789999999999997543  3454 445544

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=99.72  E-value=8.4e-16  Score=136.64  Aligned_cols=189  Identities=15%  Similarity=0.115  Sum_probs=124.3

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      .++|+|+||||+|+||++++++|+++|++|++++|+++     ....  ....   ....+..+.+|+.|.+++.+.+.+
T Consensus       176 l~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~-----~l~~--~~~~---~~~~v~~v~~Dvsd~~~v~~~l~~  245 (406)
T PRK07424        176 LKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSD-----KITL--EING---EDLPVKTLHWQVGQEAALAELLEK  245 (406)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHH-----HHHH--HHhh---cCCCeEEEEeeCCCHHHHHHHhCC
Confidence            34679999999999999999999999999999998762     1111  0111   112467889999999999999999


Q ss_pred             ccEEEEecccCCCCCCCh--hhHHHHHHHHHHHHHHHHHHhc----CC--cc-EEEEecccceeecCCCCCCcccCCCCC
Q 020104           83 CTGVLHVATPVDFEDKEP--EEVITQRAINGTLGILKSCLKS----GT--VK-RVVYTSSNAAVFYNDKDVDMMDETFWS  153 (331)
Q Consensus        83 ~d~Vih~a~~~~~~~~~~--~~~~~~~n~~~~~~l~~~~~~~----~~--~~-~~v~~SS~~~~~~~~~~~~~~~E~~~~  153 (331)
                      +|++||+||.......+.  .+..+++|+.++.++++++...    +.  .+ .+|++|+.. .  .             
T Consensus       246 IDiLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ssa~-~--~-------------  309 (406)
T PRK07424        246 VDILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSEAE-V--N-------------  309 (406)
T ss_pred             CCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEcccc-c--c-------------
Confidence            999999998643222221  1378999999999999987542    10  12 345544321 1  0             


Q ss_pred             ChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccc
Q 020104          154 DVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSM  233 (331)
Q Consensus       154 ~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (331)
                              ++....|+.||.+.+.+..-.....++.+..+.|+    |.... +            + +        ...
T Consensus       310 --------~~~~~~Y~ASKaAl~~l~~l~~~~~~~~I~~i~~g----p~~t~-~------------~-~--------~~~  355 (406)
T PRK07424        310 --------PAFSPLYELSKRALGDLVTLRRLDAPCVVRKLILG----PFKSN-L------------N-P--------IGV  355 (406)
T ss_pred             --------CCCchHHHHHHHHHHHHHHHHHhCCCCceEEEEeC----CCcCC-C------------C-c--------CCC
Confidence                    01123699999999887543222234444444443    32111 0            0 0        124


Q ss_pred             eeHHHHHHHHHHhhcCCC
Q 020104          234 VHVDDVARAHIFLLEYPD  251 (331)
Q Consensus       234 i~v~D~a~~~~~~~~~~~  251 (331)
                      +..+|+|+.++.+++++.
T Consensus       356 ~spe~vA~~il~~i~~~~  373 (406)
T PRK07424        356 MSADWVAKQILKLAKRDF  373 (406)
T ss_pred             CCHHHHHHHHHHHHHCCC
Confidence            688999999999997764

>PRK07791 short chain dehydrogenase; Provisional

Probab=99.71  E-value=4.1e-16  Score=134.45  Aligned_cols=221  Identities=15%  Similarity=0.140  Sum_probs=141.1

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCC-cccCCcccccc-ccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELD-PEHRNSKDLSF-LKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      +|++|||||++.||.++++.|++.|++|++++|+... ......+.+.. ..++.....++.++.+|+.|.+++.++++ 
T Consensus         6 ~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~   85 (286)
T PRK07791          6 GRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVDA   85 (286)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHH
Confidence            5789999999999999999999999999998876410 00000011111 11111112457788999999988877653 


Q ss_pred             ------CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHh----cC-----CccEEEEecccceeecC
Q 020104           82 ------GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLK----SG-----TVKRVVYTSSNAAVFYN  140 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~----~~-----~~~~~v~~SS~~~~~~~  140 (331)
                            ++|++||+|+....      ..+++ +..+++|+.++..+++++..    ..     ...++|++||.......
T Consensus        86 ~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~  164 (286)
T PRK07791         86 AVETFGGLDVLVNNAGILRDRMIANMSEEEW-DAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAGLQGS  164 (286)
T ss_pred             HHHhcCCCCEEEECCCCCCCCCcccCCHHHH-HHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhhCcCC
Confidence                  58999999986431      11223 37899999999888877642    11     01489999996654211


Q ss_pred             CCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHH
Q 020104          141 DKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLAL  217 (331)
Q Consensus       141 ~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~  217 (331)
                                            +....|+.+|.+.+.+.+.++.+   ++++++.+.|+ +..+.     ..   .....
T Consensus       165 ----------------------~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~Pg-~~T~~-----~~---~~~~~  213 (286)
T PRK07791        165 ----------------------VGQGNYSAAKAGIAALTLVAAAELGRYGVTVNAIAPA-ARTRM-----TE---TVFAE  213 (286)
T ss_pred             ----------------------CCchhhHHHHHHHHHHHHHHHHHHHHhCeEEEEECCC-CCCCc-----ch---hhHHH
Confidence                                  11346999999999999887765   48999999998 42221     10   00111


Q ss_pred             HhCCCcccccCCCccceeHHHHHHHHHHhhcCCC--CCce-EEEecc
Q 020104          218 ILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKGR-YICSSH  261 (331)
Q Consensus       218 ~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~  261 (331)
                      ..... ..   +...+...+|+++++++++....  ..|. +.+.+.
T Consensus       214 ~~~~~-~~---~~~~~~~pedva~~~~~L~s~~~~~itG~~i~vdgG  256 (286)
T PRK07791        214 MMAKP-EE---GEFDAMAPENVSPLVVWLGSAESRDVTGKVFEVEGG  256 (286)
T ss_pred             HHhcC-cc---cccCCCCHHHHHHHHHHHhCchhcCCCCcEEEEcCC
Confidence            11111 00   11135679999999999987532  3454 445554

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.71  E-value=1.2e-15  Score=129.70  Aligned_cols=208  Identities=14%  Similarity=0.102  Sum_probs=137.5

Q ss_pred             CceEEEecCcc--hhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            5 KGRVCVTGGTG--FIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         5 ~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      +|+++||||++  .||+++++.|++.|++|++..|+.     ...+..+.+..   ..+...++.+|+.|+++++++++ 
T Consensus         6 ~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~-----~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~v~~~~~~   77 (262)
T PRK07984          6 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-----KLKGRVEEFAA---QLGSDIVLPCDVAEDASIDAMFAE   77 (262)
T ss_pred             CCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecch-----hHHHHHHHHHh---ccCCceEeecCCCCHHHHHHHHHH
Confidence            46899999985  899999999999999999888864     11222222221   11345678999999998887763 


Q ss_pred             ------CccEEEEecccCCCCC--------CC--hhhHHHHHHHHHHHHHHHHHHhc-CCccEEEEecccceeecCCCCC
Q 020104           82 ------GCTGVLHVATPVDFED--------KE--PEEVITQRAINGTLGILKSCLKS-GTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~~--------~~--~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                            ++|++||+||......        .+  ..+..+++|+.++..+.+++... ..-.++|++||.....   .  
T Consensus        78 ~~~~~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~~---~--  152 (262)
T PRK07984         78 LGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER---A--  152 (262)
T ss_pred             HHhhcCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCCC---C--
Confidence                  4899999998543110        01  11256788999888888776532 1125899999865321   0  


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                        .               +....|+.+|.+.+.+++.++.+.   +++++.+.||.+..+-.. .... ...........
T Consensus       153 --~---------------~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~-~~~~-~~~~~~~~~~~  213 (262)
T PRK07984        153 --I---------------PNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAAS-GIKD-FRKMLAHCEAV  213 (262)
T ss_pred             --C---------------CCcchhHHHHHHHHHHHHHHHHHhcccCcEEeeeecCcccchHHh-cCCc-hHHHHHHHHHc
Confidence              0               112369999999999999988764   799999999998764211 0111 11111111111


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                       ...     ..+...+|++.++++++...
T Consensus       214 -~p~-----~r~~~pedva~~~~~L~s~~  236 (262)
T PRK07984        214 -TPI-----RRTVTIEDVGNSAAFLCSDL  236 (262)
T ss_pred             -CCC-----cCCCCHHHHHHHHHHHcCcc
Confidence             111     25678999999999998753

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.71  E-value=1e-15  Score=130.20  Aligned_cols=207  Identities=13%  Similarity=0.022  Sum_probs=137.7

Q ss_pred             CceEEEecCcc--hhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            5 KGRVCVTGGTG--FIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         5 ~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      +|.++||||++  .||.++++.|+++|++|++..|+.     ...+..+.+.+..   ....++.+|+.|++++.++++ 
T Consensus         8 ~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~-----~~~~~~~~l~~~~---g~~~~~~~Dv~~~~~v~~~~~~   79 (260)
T PRK06603          8 GKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSE-----VLEKRVKPLAEEI---GCNFVSELDVTNPKSISNLFDD   79 (260)
T ss_pred             CcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCch-----HHHHHHHHHHHhc---CCceEEEccCCCHHHHHHHHHH
Confidence            46899999997  799999999999999999888764     2122222222111   122357899999998887764 


Q ss_pred             ------CccEEEEecccCCC----------CCCChhhHHHHHHHHHHHHHHHHHHhc-CCccEEEEecccceeecCCCCC
Q 020104           82 ------GCTGVLHVATPVDF----------EDKEPEEVITQRAINGTLGILKSCLKS-GTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~----------~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                            ++|++||+|+....          ...++ +..+++|+.++..+++++... ..-.++|++||.....   .  
T Consensus        80 ~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~-~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~---~--  153 (260)
T PRK06603         80 IKEKWGSFDFLLHGMAFADKNELKGRYVDTSLENF-HNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAEK---V--  153 (260)
T ss_pred             HHHHcCCccEEEEccccCCcccccCccccCCHHHH-HHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCcccc---C--
Confidence                  48999999985321          11123 368899999998888876532 1125899999955321   0  


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                                       .+....|+.+|.+.+.+.+.++.+.   +++++.+.||.+-.+.... ... ...........
T Consensus       154 -----------------~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~-~~~-~~~~~~~~~~~  214 (260)
T PRK06603        154 -----------------IPNYNVMGVAKAALEASVKYLANDMGENNIRVNAISAGPIKTLASSA-IGD-FSTMLKSHAAT  214 (260)
T ss_pred             -----------------CCcccchhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcCcchhhhc-CCC-cHHHHHHHHhc
Confidence                             0112469999999999999888754   7999999999997653111 011 01111111111


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                       ..+     ..+...+|+++++++++..+
T Consensus       215 -~p~-----~r~~~pedva~~~~~L~s~~  237 (260)
T PRK06603        215 -APL-----KRNTTQEDVGGAAVYLFSEL  237 (260)
T ss_pred             -CCc-----CCCCCHHHHHHHHHHHhCcc
Confidence             111     25678999999999999753

>PRK12367 short chain dehydrogenase; Provisional

Probab=99.71  E-value=8e-16  Score=129.23  Aligned_cols=185  Identities=15%  Similarity=0.105  Sum_probs=123.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      +++++||||+|+||++++++|+++|++|++++|+..     ...  .....     .....+.+|+.|.+++.+.+.++|
T Consensus        14 ~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~-----~~~--~~~~~-----~~~~~~~~D~~~~~~~~~~~~~iD   81 (245)
T PRK12367         14 GKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKI-----NNS--ESNDE-----SPNEWIKWECGKEESLDKQLASLD   81 (245)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCch-----hhh--hhhcc-----CCCeEEEeeCCCHHHHHHhcCCCC
Confidence            578999999999999999999999999999998761     111  10000     112567899999999998888999


Q ss_pred             EEEEecccCCCC---CCChhhHHHHHHHHHHHHHHHHHHhcC------CccEEEEecccceeecCCCCCCcccCCCCCCh
Q 020104           85 GVLHVATPVDFE---DKEPEEVITQRAINGTLGILKSCLKSG------TVKRVVYTSSNAAVFYNDKDVDMMDETFWSDV  155 (331)
Q Consensus        85 ~Vih~a~~~~~~---~~~~~~~~~~~n~~~~~~l~~~~~~~~------~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~  155 (331)
                      ++||+||.....   .+++. ..+++|+.++.++++++...-      .-..++..||.....  .              
T Consensus        82 ilVnnAG~~~~~~~~~~~~~-~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~--~--------------  144 (245)
T PRK12367         82 VLILNHGINPGGRQDPENIN-KALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEIQ--P--------------  144 (245)
T ss_pred             EEEECCccCCcCCCCHHHHH-HHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccccC--C--------------
Confidence            999999864322   22333 789999999999999776421      012344444433221  0              


Q ss_pred             hhhhhcCCCCchhHhhHHHHHHHH---HHHHH---HcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCC
Q 020104          156 DYIRKLDSWGKSYAISKTLTERAA---LEFAE---EHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLL  229 (331)
Q Consensus       156 ~~~~~~~~~~~~Y~~~K~~~e~~~---~~~~~---~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (331)
                             +....|+.||.+.+.+.   +++..   ..++.+..+.|+.+..+-     .             +       
T Consensus       145 -------~~~~~Y~aSKaal~~~~~l~~~l~~e~~~~~i~v~~~~pg~~~t~~-----~-------------~-------  192 (245)
T PRK12367        145 -------ALSPSYEISKRLIGQLVSLKKNLLDKNERKKLIIRKLILGPFRSEL-----N-------------P-------  192 (245)
T ss_pred             -------CCCchhHHHHHHHHHHHHHHHHHHHhhcccccEEEEecCCCccccc-----C-------------c-------
Confidence                   11236999999875433   22221   246777777777653221     0             0       


Q ss_pred             CccceeHHHHHHHHHHhhcCCC
Q 020104          230 NTSMVHVDDVARAHIFLLEYPD  251 (331)
Q Consensus       230 ~~~~i~v~D~a~~~~~~~~~~~  251 (331)
                       ...+..+|+|+.++.++.++.
T Consensus       193 -~~~~~~~~vA~~i~~~~~~~~  213 (245)
T PRK12367        193 -IGIMSADFVAKQILDQANLGL  213 (245)
T ss_pred             -cCCCCHHHHHHHHHHHHhcCC
Confidence             024678999999999987653

>PRK06484 short chain dehydrogenase; Validated

Probab=99.71  E-value=6.5e-16  Score=144.52  Aligned_cols=210  Identities=17%  Similarity=0.170  Sum_probs=143.3

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |...+|+++||||++.||.+++++|+++|++|++++|+.     +......  .++   ..++.++.+|+.|++++.+++
T Consensus         1 ~~~~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~-----~~~~~~~--~~~---~~~~~~~~~D~~~~~~~~~~~   70 (520)
T PRK06484          1 SKAQSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNV-----ERARERA--DSL---GPDHHALAMDVSDEAQIREGF   70 (520)
T ss_pred             CCCCCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHH--HHh---CCceeEEEeccCCHHHHHHHH
Confidence            455678999999999999999999999999999999987     2222111  111   135678999999998887776


Q ss_pred             c-------CccEEEEecccCC--------CCCCChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCC
Q 020104           81 A-------GCTGVLHVATPVD--------FEDKEPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYND  141 (331)
Q Consensus        81 ~-------~~d~Vih~a~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~  141 (331)
                      +       ++|++||+|+...        ....++ +..+++|+.++..+++++...    +.-.++|++||....... 
T Consensus        71 ~~~~~~~g~iD~li~nag~~~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~~~-  148 (520)
T PRK06484         71 EQLHREFGRIDVLVNNAGVTDPTMTATLDTTLEEF-ARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLVAL-  148 (520)
T ss_pred             HHHHHHhCCCCEEEECCCcCCCCCcccccCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCCCC-
Confidence            4       5899999998632        111223 378899999999888877653    311389999997654211 


Q ss_pred             CCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHH
Q 020104          142 KDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALI  218 (331)
Q Consensus       142 ~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~  218 (331)
                                           +....|+.+|.+.+.+++.++.+.   +++++.+.|+.+..+............ ....
T Consensus       149 ---------------------~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~-~~~~  206 (520)
T PRK06484        149 ---------------------PKRTAYSASKAAVISLTRSLACEWAAKGIRVNAVLPGYVRTQMVAELERAGKLD-PSAV  206 (520)
T ss_pred             ---------------------CCCchHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCcCchhhhhhcccchhh-hHHH
Confidence                                 113469999999999999887764   799999999988766422100000000 0000


Q ss_pred             hCCCcccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          219 LGNREEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       219 ~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      .. ....     ..+...+|++.++.+++...
T Consensus       207 ~~-~~~~-----~~~~~~~~va~~v~~l~~~~  232 (520)
T PRK06484        207 RS-RIPL-----GRLGRPEEIAEAVFFLASDQ  232 (520)
T ss_pred             Hh-cCCC-----CCCcCHHHHHHHHHHHhCcc
Confidence            00 0111     14568899999999988753

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.70  E-value=1.1e-15  Score=129.91  Aligned_cols=211  Identities=15%  Similarity=0.088  Sum_probs=139.5

Q ss_pred             CCCC-CceEEEecC--cchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHH
Q 020104            1 MEEG-KGRVCVTGG--TGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFD   77 (331)
Q Consensus         1 M~~~-~~~ilVtGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~   77 (331)
                      |..+ .|+++||||  ++-||.+++++|++.|++|+++.|..     ...+.++.+.+..   .....+.+|+.|++++.
T Consensus         1 ~~~l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~-----~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~   72 (260)
T PRK06997          1 MGFLAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGD-----RFKDRITEFAAEF---GSDLVFPCDVASDEQID   72 (260)
T ss_pred             CCccCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccch-----HHHHHHHHHHHhc---CCcceeeccCCCHHHHH
Confidence            4433 478999996  67999999999999999999887643     1222232222111   12346889999999888


Q ss_pred             HHhc-------CccEEEEecccCCC-----------CCCChhhHHHHHHHHHHHHHHHHHHhc-CCccEEEEecccceee
Q 020104           78 AAIA-------GCTGVLHVATPVDF-----------EDKEPEEVITQRAINGTLGILKSCLKS-GTVKRVVYTSSNAAVF  138 (331)
Q Consensus        78 ~~~~-------~~d~Vih~a~~~~~-----------~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~  138 (331)
                      ++++       ++|++||+||....           ..+++ +..+++|+.++..+.+++... ..-.++|++||.....
T Consensus        73 ~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~-~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~~~  151 (260)
T PRK06997         73 ALFASLGQHWDGLDGLVHSIGFAPREAIAGDFLDGLSRENF-RIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAER  151 (260)
T ss_pred             HHHHHHHHHhCCCcEEEEccccCCccccccccchhcCHHHH-HHHHHhhhHHHHHHHHHHHHhcCCCceEEEEecccccc
Confidence            7764       58999999986431           01122 367889999998888877653 1135899999865321


Q ss_pred             cCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHH
Q 020104          139 YNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSL  215 (331)
Q Consensus       139 ~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~  215 (331)
                         .                   .+....|+.+|.+.+.+.+.++.+.   +++++.+.||.+-.+-... .. ......
T Consensus       152 ---~-------------------~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~-~~-~~~~~~  207 (260)
T PRK06997        152 ---V-------------------VPNYNTMGLAKASLEASVRYLAVSLGPKGIRANGISAGPIKTLAASG-IK-DFGKIL  207 (260)
T ss_pred             ---C-------------------CCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCccccchhcc-cc-chhhHH
Confidence               0                   0113469999999999999888764   7999999999987642111 10 001111


Q ss_pred             HHHhCCCcccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          216 ALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      ...... ..+     ..+...+|+++++.+++..+
T Consensus       208 ~~~~~~-~p~-----~r~~~pedva~~~~~l~s~~  236 (260)
T PRK06997        208 DFVESN-APL-----RRNVTIEEVGNVAAFLLSDL  236 (260)
T ss_pred             HHHHhc-Ccc-----cccCCHHHHHHHHHHHhCcc
Confidence            111111 112     25678999999999999754

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.70  E-value=6.9e-16  Score=141.60  Aligned_cols=214  Identities=17%  Similarity=0.097  Sum_probs=142.0

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      +++++||||+|.||..+++.|+++|++|++++|+.      ..+.+..+...    .+...+.+|+.|.+++.++++   
T Consensus       210 g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~------~~~~l~~~~~~----~~~~~~~~Dv~~~~~~~~~~~~~~  279 (450)
T PRK08261        210 GKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPA------AGEALAAVANR----VGGTALALDITAPDAPARIAEHLA  279 (450)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCc------cHHHHHHHHHH----cCCeEEEEeCCCHHHHHHHHHHHH
Confidence            57899999999999999999999999999998854      11222222111    134578899999988777664   


Q ss_pred             ----CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHhcC---CccEEEEecccceeecCCCCCCccc
Q 020104           82 ----GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLKSG---TVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        82 ----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                          ++|+|||+|+....      ...++ +..+++|+.++.++.+++....   .-.+||++||...+...        
T Consensus       280 ~~~g~id~vi~~AG~~~~~~~~~~~~~~~-~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~~g~--------  350 (450)
T PRK08261        280 ERHGGLDIVVHNAGITRDKTLANMDEARW-DSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGIAGN--------  350 (450)
T ss_pred             HhCCCCCEEEECCCcCCCCChhhCCHHHH-HHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCC--------
Confidence                58999999986542      11223 3778899999999999987642   12689999997654211        


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCccc
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEY  225 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  225 (331)
                                    +....|+.+|...+.+++.++.+   .+++++.+.||.+-.+... ..+..    ..........+
T Consensus       351 --------------~~~~~Y~asKaal~~~~~~la~el~~~gi~v~~v~PG~i~t~~~~-~~~~~----~~~~~~~~~~l  411 (450)
T PRK08261        351 --------------RGQTNYAASKAGVIGLVQALAPLLAERGITINAVAPGFIETQMTA-AIPFA----TREAGRRMNSL  411 (450)
T ss_pred             --------------CCChHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeCcCcchhhh-ccchh----HHHHHhhcCCc
Confidence                          11346999999888888877654   4799999999987543211 11110    00000000111


Q ss_pred             ccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          226 GFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       226 ~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                      .     ...-.+|+++++.+++....  ..| .+.++++
T Consensus       412 ~-----~~~~p~dva~~~~~l~s~~~~~itG~~i~v~g~  445 (450)
T PRK08261        412 Q-----QGGLPVDVAETIAWLASPASGGVTGNVVRVCGQ  445 (450)
T ss_pred             C-----CCCCHHHHHHHHHHHhChhhcCCCCCEEEECCC
Confidence            1     33456799999999987533  233 4455554

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=99.70  E-value=1.2e-15  Score=133.29  Aligned_cols=240  Identities=16%  Similarity=0.123  Sum_probs=142.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      |+++++||||++.||.++++.|+++| ++|++++|+.     .......  .++......+.++.+|+.|.+++.++++ 
T Consensus         2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~-----~~~~~~~--~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~   74 (314)
T TIGR01289         2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDF-----LKAEQAA--KSLGMPKDSYTIMHLDLGSLDSVRQFVQQ   74 (314)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCH-----HHHHHHH--HHhcCCCCeEEEEEcCCCCHHHHHHHHHH
Confidence            35789999999999999999999999 9999999986     2222111  1111112457788999999988776653 


Q ss_pred             ------CccEEEEecccCCCC----C--CChhhHHHHHHHHHHHHHHHHHH----hcC-CccEEEEecccceeecCCCC-
Q 020104           82 ------GCTGVLHVATPVDFE----D--KEPEEVITQRAINGTLGILKSCL----KSG-TVKRVVYTSSNAAVFYNDKD-  143 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~----~--~~~~~~~~~~n~~~~~~l~~~~~----~~~-~~~~~v~~SS~~~~~~~~~~-  143 (331)
                            ++|++||+||.....    .  .+..+..+++|+.++..+.+++.    +.+ ...++|++||...+...... 
T Consensus        75 ~~~~~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~~  154 (314)
T TIGR01289        75 FRESGRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGN  154 (314)
T ss_pred             HHHhCCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccccCCCc
Confidence                  589999999864311    1  11223678999999877766544    332 13699999998765311000 


Q ss_pred             -CCcccCCCCC-------Ch-hhh-hhcCCCCchhHhhHHHHHHHHHHHHHH----cCCcEEEeccCceeCCCCCCCCCc
Q 020104          144 -VDMMDETFWS-------DV-DYI-RKLDSWGKSYAISKTLTERAALEFAEE----HGLDLVTLIPSMVVGPFICPKFAG  209 (331)
Q Consensus       144 -~~~~~E~~~~-------~~-~~~-~~~~~~~~~Y~~~K~~~e~~~~~~~~~----~~~~~~ilRp~~v~G~~~~~~~~~  209 (331)
                       ..+.+..+..       .. ... .....+...|+.||.+...+.+.++++    .+++++.++||.|...........
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~T~l~~~~~~  234 (314)
T TIGR01289       155 VPPKANLGDLSGLAAGFKAPIAMIDGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIADTGLFREHVP  234 (314)
T ss_pred             CCCcccccccccccccCCCcccccCCCCcchhhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCcccCCcccccccH
Confidence             0001101000       00 000 000123457999999988888777664    369999999999853322111111


Q ss_pred             cHHHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC--CCceEE
Q 020104          210 SVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKGRYI  257 (331)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~  257 (331)
                      ..........  ....     ..+...++.++.++.++..+.  .+|.|.
T Consensus       235 ~~~~~~~~~~--~~~~-----~~~~~~~~~a~~l~~~~~~~~~~~~g~~~  277 (314)
T TIGR01289       235 LFRTLFPPFQ--KYIT-----KGYVSEEEAGERLAQVVSDPKLKKSGVYW  277 (314)
T ss_pred             HHHHHHHHHH--HHHh-----ccccchhhhhhhhHHhhcCcccCCCceee
Confidence            1110000000  0000     135678899999998877543  345554

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.69  E-value=4e-15  Score=126.24  Aligned_cols=218  Identities=16%  Similarity=0.055  Sum_probs=140.6

Q ss_pred             CceEEEecC--cchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            5 KGRVCVTGG--TGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         5 ~~~ilVtGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      +|+++||||  ++.||.++++.|++.|++|++++|+.     . .+..+.+.+..  ...+.++.+|+.|++++.++++ 
T Consensus         7 ~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~-----~-~~~~~~~~~~~--~~~~~~~~~Dv~~~~~i~~~~~~   78 (256)
T PRK07889          7 GKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGR-----A-LRLTERIAKRL--PEPAPVLELDVTNEEHLASLADR   78 (256)
T ss_pred             CCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCcc-----c-hhHHHHHHHhc--CCCCcEEeCCCCCHHHHHHHHHH
Confidence            478999999  89999999999999999999998764     1 11111111110  1246788999999988877653 


Q ss_pred             ------CccEEEEecccCCC-------CCCCh--hhHHHHHHHHHHHHHHHHHHhc-CCccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDF-------EDKEP--EEVITQRAINGTLGILKSCLKS-GTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~-------~~~~~--~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|++||+||....       ...++  ....+++|+.++..+++++... ..-.++|++|+....+       
T Consensus        79 ~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~~~~~~-------  151 (256)
T PRK07889         79 VREHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDFDATVA-------  151 (256)
T ss_pred             HHHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEeeccccc-------
Confidence                  58999999986421       11111  1256899999988888776543 1125788887532110       


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                      .+....|+.+|.+.+.+.+.++.+   ++++++.+.||.+..+.... ... .......... .
T Consensus       152 ----------------~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~-~~~-~~~~~~~~~~-~  212 (256)
T PRK07889        152 ----------------WPAYDWMGVAKAALESTNRYLARDLGPRGIRVNLVAAGPIRTLAAKA-IPG-FELLEEGWDE-R  212 (256)
T ss_pred             ----------------CCccchhHHHHHHHHHHHHHHHHHhhhcCeEEEeeccCcccChhhhc-ccC-cHHHHHHHHh-c
Confidence                            011236899999999999888765   37999999999997653211 110 0111111111 1


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC--CCce-EEEec
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKGR-YICSS  260 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~  260 (331)
                      ..++    +.+...+|+|+++++++....  ..|. +.+.+
T Consensus       213 ~p~~----~~~~~p~evA~~v~~l~s~~~~~~tG~~i~vdg  249 (256)
T PRK07889        213 APLG----WDVKDPTPVARAVVALLSDWFPATTGEIVHVDG  249 (256)
T ss_pred             Cccc----cccCCHHHHHHHHHHHhCcccccccceEEEEcC
Confidence            1111    146789999999999997643  2443 44544

>TIGR01500 sepiapter_red sepiapterin reductase

Probab=99.69  E-value=3.6e-16  Score=132.76  Aligned_cols=209  Identities=15%  Similarity=0.065  Sum_probs=135.6

Q ss_pred             eEEEecCcchhHHHHHHHHHH----CCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            7 RVCVTGGTGFIASWLIMRLLD----HGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~----~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      .++||||+|.||.+++++|++    .|++|++++|+..     ..+.. ..+... .....+.++.+|+.|.+++.++++
T Consensus         2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~-----~~~~~~~~l~~~-~~~~~v~~~~~Dl~~~~~v~~~~~   75 (256)
T TIGR01500         2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDE-----ALRQLKAEIGAE-RSGLRVVRVSLDLGAEAGLEQLLK   75 (256)
T ss_pred             EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHH-----HHHHHHHHHHhc-CCCceEEEEEeccCCHHHHHHHHH
Confidence            589999999999999999997    7999999999872     22211 111110 012357889999999988877664


Q ss_pred             C-----------ccEEEEecccCCCC---C---C--ChhhHHHHHHHHHHHHHHHHHHhc-----CCccEEEEeccccee
Q 020104           82 G-----------CTGVLHVATPVDFE---D---K--EPEEVITQRAINGTLGILKSCLKS-----GTVKRVVYTSSNAAV  137 (331)
Q Consensus        82 ~-----------~d~Vih~a~~~~~~---~---~--~~~~~~~~~n~~~~~~l~~~~~~~-----~~~~~~v~~SS~~~~  137 (331)
                      .           .|+|||+||.....   .   .  +..+..+++|+.++..+.+++...     +...++|++||...+
T Consensus        76 ~~~~~~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~  155 (256)
T TIGR01500        76 ALRELPRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAI  155 (256)
T ss_pred             HHHhccccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhC
Confidence            1           26999999854211   1   1  122378899999987777665432     212589999997654


Q ss_pred             ecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCc-cHHH
Q 020104          138 FYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAG-SVRS  213 (331)
Q Consensus       138 ~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~-~~~~  213 (331)
                      ..                      .+....|+.+|.+.+.+++.++.+.   +++++.+.||.+-.+........ .-..
T Consensus       156 ~~----------------------~~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~v~PG~v~T~~~~~~~~~~~~~~  213 (256)
T TIGR01500       156 QP----------------------FKGWALYCAGKAARDMLFQVLALEEKNPNVRVLNYAPGVLDTDMQQQVREESVDPD  213 (256)
T ss_pred             CC----------------------CCCchHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHhcCChh
Confidence            20                      0123479999999999999887764   79999999999865521100000 0000


Q ss_pred             HHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcC
Q 020104          214 SLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEY  249 (331)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~  249 (331)
                      ....... ....     ..+...+|+|++++.++.+
T Consensus       214 ~~~~~~~-~~~~-----~~~~~p~eva~~~~~l~~~  243 (256)
T TIGR01500       214 MRKGLQE-LKAK-----GKLVDPKVSAQKLLSLLEK  243 (256)
T ss_pred             HHHHHHH-HHhc-----CCCCCHHHHHHHHHHHHhc
Confidence            0000000 0011     1467899999999999863

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.

>PLN02780 ketoreductase/ oxidoreductase

Probab=99.68  E-value=5.1e-16  Score=135.57  Aligned_cols=197  Identities=18%  Similarity=0.224  Sum_probs=133.4

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCC--ccHH---H
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHP--DGFD---A   78 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~--~~~~---~   78 (331)
                      ++.++||||||.||.+++++|+++|++|++++|+.     +..+.. +.+.+.. ....+..+.+|+.+.  +.+.   +
T Consensus        53 g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~-----~~l~~~~~~l~~~~-~~~~~~~~~~Dl~~~~~~~~~~l~~  126 (320)
T PLN02780         53 GSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNP-----DKLKDVSDSIQSKY-SKTQIKTVVVDFSGDIDEGVKRIKE  126 (320)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCH-----HHHHHHHHHHHHHC-CCcEEEEEEEECCCCcHHHHHHHHH
Confidence            57899999999999999999999999999999987     222221 1111110 013567788999752  2222   3


Q ss_pred             HhcC--ccEEEEecccCCC-----CCCCh--hhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCC
Q 020104           79 AIAG--CTGVLHVATPVDF-----EDKEP--EEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        79 ~~~~--~d~Vih~a~~~~~-----~~~~~--~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                      .+.+  +|++||+||....     ...+.  .+..+++|+.++..+.+++.    +.+ ..++|++||...+..+ .   
T Consensus       127 ~~~~~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~-~g~IV~iSS~a~~~~~-~---  201 (320)
T PLN02780        127 TIEGLDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGAIINIGSGAAIVIP-S---  201 (320)
T ss_pred             HhcCCCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC-CcEEEEEechhhccCC-C---
Confidence            3333  5699999986431     11111  23688999999988888764    344 5799999997654210 0   


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                      .+....|+.+|.+.+.+.+.++.+.   |++++.+.||.+-.+-...              ...
T Consensus       202 ----------------~p~~~~Y~aSKaal~~~~~~L~~El~~~gI~V~~v~PG~v~T~~~~~--------------~~~  251 (320)
T PLN02780        202 ----------------DPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMASI--------------RRS  251 (320)
T ss_pred             ----------------CccchHHHHHHHHHHHHHHHHHHHHhccCeEEEEEeeCceecCcccc--------------cCC
Confidence                            0113579999999999999888764   7999999999997653110              000


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcC
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEY  249 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~  249 (331)
                       .      ......+++|+.++..+..
T Consensus       252 -~------~~~~~p~~~A~~~~~~~~~  271 (320)
T PLN02780        252 -S------FLVPSSDGYARAALRWVGY  271 (320)
T ss_pred             -C------CCCCCHHHHHHHHHHHhCC
Confidence             0      1134789999999998864

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=99.68  E-value=6.1e-15  Score=123.58  Aligned_cols=203  Identities=12%  Similarity=0.072  Sum_probs=136.1

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh---
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI---   80 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~---   80 (331)
                      |+|+||||+|+||++++++|++++  ..|.+..|+..     . .    .     ...++.++++|+.|.+++.++.   
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~-----~-~----~-----~~~~~~~~~~Dls~~~~~~~~~~~~   65 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHK-----P-D----F-----QHDNVQWHALDVTDEAEIKQLSEQF   65 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCc-----c-c----c-----ccCceEEEEecCCCHHHHHHHHHhc
Confidence            489999999999999999999985  56666566541     1 0    0     1146788999999998776654   


Q ss_pred             cCccEEEEecccCCCC---------CCC--hhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCC
Q 020104           81 AGCTGVLHVATPVDFE---------DKE--PEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        81 ~~~d~Vih~a~~~~~~---------~~~--~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                      .++|+|||+||.....         ..+  .....+++|+.++..+++.+..    .+ ..+++++||....  ....  
T Consensus        66 ~~id~li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~-~~~i~~iss~~~~--~~~~--  140 (235)
T PRK09009         66 TQLDWLINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSE-SAKFAVISAKVGS--ISDN--  140 (235)
T ss_pred             CCCCEEEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccC-CceEEEEeecccc--cccC--
Confidence            4789999999975421         001  1125778888888777776654    23 4689999873211  0000  


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH-----cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE-----HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILG  220 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~-----~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~  220 (331)
                           .          .++...|+.+|...+.+++.++.+     .+++++.+.||.+..+....     .   .   . 
T Consensus       141 -----~----------~~~~~~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~~~~-----~---~---~-  193 (235)
T PRK09009        141 -----R----------LGGWYSYRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTALSKP-----F---Q---Q-  193 (235)
T ss_pred             -----C----------CCCcchhhhhHHHHHHHHHHHHHHhhcccCCeEEEEEcccceecCCCcc-----h---h---h-
Confidence                 0          012347999999999999988865     37889999999987764221     0   0   0 


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCCC--CCceE-EEecc
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKGRY-ICSSH  261 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~-~~~~~  261 (331)
                       ....     ..++..+|++++++.++....  ..|.+ .+.++
T Consensus       194 -~~~~-----~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~~g~  231 (235)
T PRK09009        194 -NVPK-----GKLFTPEYVAQCLLGIIANATPAQSGSFLAYDGE  231 (235)
T ss_pred             -cccc-----CCCCCHHHHHHHHHHHHHcCChhhCCcEEeeCCc
Confidence             0111     246789999999999998753  24444 34443

>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=99.68  E-value=5.7e-16  Score=123.85  Aligned_cols=164  Identities=20%  Similarity=0.213  Sum_probs=118.5

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCcccccc-ccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKDLSF-LKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      ++++||||+|+||.+++++|+++|+ .|+++.|+..     ....... +.++.....++.++.+|+.+.+++.+++.  
T Consensus         1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~-----~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   75 (180)
T smart00822        1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGP-----DAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAI   75 (180)
T ss_pred             CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCC-----CCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence            4799999999999999999999986 6888888762     2111100 11111112467789999999887777654  


Q ss_pred             -----CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCC
Q 020104           82 -----GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDET  150 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~  150 (331)
                           .+|+|||+|+....      ...++. ..++.|+.++.++++++++.+ .+++|++||.......          
T Consensus        76 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~-~~~~~n~~~~~~l~~~~~~~~-~~~ii~~ss~~~~~~~----------  143 (180)
T smart00822       76 PARLGPLRGVIHAAGVLDDGLLANLTPERFA-AVLAPKVDGAWNLHELTRDLP-LDFFVLFSSVAGVLGN----------  143 (180)
T ss_pred             HHHcCCeeEEEEccccCCccccccCCHHHHH-HhhchHhHHHHHHHHHhccCC-cceEEEEccHHHhcCC----------
Confidence                 36999999985431      112233 778999999999999998876 7899999997654211          


Q ss_pred             CCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCcee
Q 020104          151 FWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVV  199 (331)
Q Consensus       151 ~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~  199 (331)
                                  .....|+.+|...+.+++... ..+++++.+.|+.+-
T Consensus       144 ------------~~~~~y~~sk~~~~~~~~~~~-~~~~~~~~~~~g~~~  179 (180)
T smart00822      144 ------------PGQANYAAANAFLDALAAHRR-ARGLPATSINWGAWA  179 (180)
T ss_pred             ------------CCchhhHHHHHHHHHHHHHHH-hcCCceEEEeecccc
Confidence                        113469999999999996554 468999999888654

It uses NADPH to reduce the keto group to a hydroxy group.

>PRK05599 hypothetical protein; Provisional

Probab=99.68  E-value=3.8e-15  Score=125.65  Aligned_cols=204  Identities=16%  Similarity=0.131  Sum_probs=135.7

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      |+++||||++.||.+++++|+ +|++|++++|+.     +..+.+ +.+.+..  ...+.++.+|+.|.++++++++   
T Consensus         1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~-----~~~~~~~~~l~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~   72 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRP-----EAAQGLASDLRQRG--ATSVHVLSFDAQDLDTHRELVKQTQ   72 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCH-----HHHHHHHHHHHhcc--CCceEEEEcccCCHHHHHHHHHHHH
Confidence            479999999999999999998 599999999987     222221 1222111  1247889999999988877653   


Q ss_pred             ----CccEEEEecccCCCC---CCC--hhhHHHHHHHHHHHHHHH----HHHhcCCccEEEEecccceeecCCCCCCccc
Q 020104           82 ----GCTGVLHVATPVDFE---DKE--PEEVITQRAINGTLGILK----SCLKSGTVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        82 ----~~d~Vih~a~~~~~~---~~~--~~~~~~~~n~~~~~~l~~----~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                          ++|++||+||.....   ..+  ...+..++|+.+...++.    .+.+.+.-.++|++||.....  ..      
T Consensus        73 ~~~g~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~--~~------  144 (246)
T PRK05599         73 ELAGEISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWR--AR------  144 (246)
T ss_pred             HhcCCCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEecccccc--CC------
Confidence                589999999865321   111  112456677777665544    344432136899999965431  10      


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCccc
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEY  225 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  225 (331)
                                    +....|+.+|.+.+.+.+.++.+.   +++++.+.||.+..+-....              .+.. 
T Consensus       145 --------------~~~~~Y~asKaa~~~~~~~la~el~~~~I~v~~v~PG~v~T~~~~~~--------------~~~~-  195 (246)
T PRK05599        145 --------------RANYVYGSTKAGLDAFCQGLADSLHGSHVRLIIARPGFVIGSMTTGM--------------KPAP-  195 (246)
T ss_pred             --------------cCCcchhhHHHHHHHHHHHHHHHhcCCCceEEEecCCcccchhhcCC--------------CCCC-
Confidence                          113369999999999998887763   79999999998876521100              0000 


Q ss_pred             ccCCCccceeHHHHHHHHHHhhcCCCCCceEEEec
Q 020104          226 GFLLNTSMVHVDDVARAHIFLLEYPDAKGRYICSS  260 (331)
Q Consensus       226 ~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~~  260 (331)
                            -....+|+|++++.++.+......+...+
T Consensus       196 ------~~~~pe~~a~~~~~~~~~~~~~~~~~~~~  224 (246)
T PRK05599        196 ------MSVYPRDVAAAVVSAITSSKRSTTLWIPG  224 (246)
T ss_pred             ------CCCCHHHHHHHHHHHHhcCCCCceEEeCc
Confidence                  12468999999999998765444444433

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.68  E-value=6.4e-16  Score=128.81  Aligned_cols=169  Identities=18%  Similarity=0.129  Sum_probs=122.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHh--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAI--   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~--   80 (331)
                      .+|.|+||||+..||.+++.+|++.|.+++.++|..     +..++. +.+++..... ++.++++|+.|.+++.+.+  
T Consensus        11 ~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~-----rrl~~v~~~l~~~~~~~-~v~~~~~Dvs~~~~~~~~~~~   84 (282)
T KOG1205|consen   11 AGKVVLITGASSGIGEALAYELAKRGAKLVLVARRA-----RRLERVAEELRKLGSLE-KVLVLQLDVSDEESVKKFVEW   84 (282)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhh-----hhHHHHHHHHHHhCCcC-ccEEEeCccCCHHHHHHHHHH
Confidence            467899999999999999999999999999888887     455554 4443332222 6899999999999888665  


Q ss_pred             -----cCccEEEEecccCCCCCC-----ChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCc
Q 020104           81 -----AGCTGVLHVATPVDFEDK-----EPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        81 -----~~~d~Vih~a~~~~~~~~-----~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                           .++|++||+||.......     ......+++|+.|+-.+.+++.    +.+ -.++|.+||..-+..       
T Consensus        85 ~~~~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG~~~-------  156 (282)
T KOG1205|consen   85 AIRHFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAGKMP-------  156 (282)
T ss_pred             HHHhcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEeccccccC-------
Confidence                 379999999996552111     1123588999888777766654    444 479999999765421       


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEE----EeccCceeCC
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLV----TLIPSMVVGP  201 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~----ilRp~~v~G~  201 (331)
                                     .+....|..||.+.+.+...+..+..-..+    ++-||.|-..
T Consensus       157 ---------------~P~~~~Y~ASK~Al~~f~etLR~El~~~~~~i~i~V~PG~V~Te  200 (282)
T KOG1205|consen  157 ---------------LPFRSIYSASKHALEGFFETLRQELIPLGTIIIILVSPGPIETE  200 (282)
T ss_pred             ---------------CCcccccchHHHHHHHHHHHHHHHhhccCceEEEEEecCceeec
Confidence                           111237999999999999998887633222    3667766544

>KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism]

Probab=99.68  E-value=2.5e-16  Score=123.56  Aligned_cols=275  Identities=16%  Similarity=0.122  Sum_probs=171.2

Q ss_pred             ceEEEecCcchhHHHHHH-----HHHHCC----CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccH
Q 020104            6 GRVCVTGGTGFIASWLIM-----RLLDHG----YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGF   76 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~-----~L~~~g----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~   76 (331)
                      .+.++-+++|+|+.+|..     ++-+.+    |+|+++.|++.     +              .++..-..|..-    
T Consensus        13 r~a~~~~~~g~i~~nl~~~~~~~H~t~~~~a~~h~vtv~sR~pg-----~--------------~ritw~el~~~G----   69 (315)
T KOG3019|consen   13 RDAVSNWSNGIIRENLGSETSCCHDTNVHSADNHAVTVLSRSPG-----K--------------ARITWPELDFPG----   69 (315)
T ss_pred             ccCCCCccccchhccccCcccccccCCCCcccccceEEEecCCC-----C--------------cccccchhcCCC----
Confidence            457788899999998887     443333    99999999982     2              112211111111    


Q ss_pred             HHHhcCccEEEEeccc-----CCCCCCChhhHHHHHHHHHHHHHHHHHHhcCC-ccEEEEecccceeecCCCCCCcccCC
Q 020104           77 DAAIAGCTGVLHVATP-----VDFEDKEPEEVITQRAINGTLGILKSCLKSGT-VKRVVYTSSNAAVFYNDKDVDMMDET  150 (331)
Q Consensus        77 ~~~~~~~d~Vih~a~~-----~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~E~  150 (331)
                        +.-.++.++|+++.     ...+......+.....+..+..|+++..+..+ .+.+|.+|..++|  .+.....++|+
T Consensus        70 --ip~sc~a~vna~g~n~l~P~rRWsp~fqkev~gSRi~~t~~la~aI~~aPq~~~~~Vlv~gva~y--~pS~s~eY~e~  145 (315)
T KOG3019|consen   70 --IPISCVAGVNAVGNNALLPIRRWSPEFQKEVKGSRIRVTSKLADAINNAPQEARPTVLVSGVAVY--VPSESQEYSEK  145 (315)
T ss_pred             --CceehHHHHhhhhhhccCchhhcCHHHHHHhhcceeeHHHHHHHHHhcCCCCCCCeEEEEeeEEe--ccccccccccc
Confidence              01133444444431     22222122224444456678899999998764 3489999998877  35555677887


Q ss_pred             CCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCC
Q 020104          151 FWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLN  230 (331)
Q Consensus       151 ~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (331)
                      ++..         .......--+.=|...+...  ...+.+++|.|.|.|.+... + ..+.  +....+-+.+++.+.+
T Consensus       146 ~~~q---------gfd~~srL~l~WE~aA~~~~--~~~r~~~iR~GvVlG~gGGa-~-~~M~--lpF~~g~GGPlGsG~Q  210 (315)
T KOG3019|consen  146 IVHQ---------GFDILSRLCLEWEGAALKAN--KDVRVALIRIGVVLGKGGGA-L-AMMI--LPFQMGAGGPLGSGQQ  210 (315)
T ss_pred             cccC---------ChHHHHHHHHHHHHHhhccC--cceeEEEEEEeEEEecCCcc-h-hhhh--hhhhhccCCcCCCCCe
Confidence            7521         11112211112222222211  24899999999999987432 1 1111  1222355567888888


Q ss_pred             -ccceeHHHHHHHHHHhhcCCCCCceEE-EeccccCHHHHHHHHHhhCC---CCCCCCcc---CCccc---cCCcCcccC
Q 020104          231 -TSMVHVDDVARAHIFLLEYPDAKGRYI-CSSHTLTIQEMAEFLSAKYP---EYPIPTVD---SLAEI---EGYRAPGSS  299 (331)
Q Consensus       231 -~~~i~v~D~a~~~~~~~~~~~~~~~~~-~~~~~~s~~e~~~~i~~~~~---~~~~~~~~---~~~~~---~~~~~~~~~  299 (331)
                       ++|||++|++..+..+++++...|+.| +..++++..|+.+.+.+.++   -+++|.+.   .+.+.   ......-+-
T Consensus       211 ~fpWIHv~DL~~li~~ale~~~v~GViNgvAP~~~~n~Ef~q~lg~aL~Rp~~~pvP~fvvqA~fG~erA~~vLeGqKV~  290 (315)
T KOG3019|consen  211 WFPWIHVDDLVNLIYEALENPSVKGVINGVAPNPVRNGEFCQQLGSALSRPSWLPVPDFVVQALFGPERATVVLEGQKVL  290 (315)
T ss_pred             eeeeeehHHHHHHHHHHHhcCCCCceecccCCCccchHHHHHHHHHHhCCCcccCCcHHHHHHHhCccceeEEeeCCccc
Confidence             799999999999999999998999999 57889999999999999886   23444311   11100   111233456


Q ss_pred             cHHHHHcCCcccc-ChhhhHHHHH
Q 020104          300 SKKLLDAGFRYNY-GIDEMFDEAI  322 (331)
Q Consensus       300 ~~k~~~lg~~~~~-~~~e~i~~~~  322 (331)
                      +.|+.++||+++| .+++++++++
T Consensus       291 Pqral~~Gf~f~yp~vk~Al~~i~  314 (315)
T KOG3019|consen  291 PQRALELGFEFKYPYVKDALRAIM  314 (315)
T ss_pred             chhHhhcCceeechHHHHHHHHHh
Confidence            7788889999999 7888888764

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=99.64  E-value=2.9e-14  Score=120.63  Aligned_cols=217  Identities=18%  Similarity=0.155  Sum_probs=145.4

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCc-cccccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNS-KDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      ..+|.+|||||+..||+++++.|++.|.+|++.+|+.+     .. +....+........++..+.+|+.+.+++.+++.
T Consensus         6 l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~   80 (270)
T KOG0725|consen    6 LAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEE-----RLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVE   80 (270)
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHH
Confidence            35688999999999999999999999999999999882     21 1112211111123568899999998877666542


Q ss_pred             --------CccEEEEecccCCC-------CCCChhhHHHHHHHHH-HHHHHHHHHhc---CCccEEEEecccceeecCCC
Q 020104           82 --------GCTGVLHVATPVDF-------EDKEPEEVITQRAING-TLGILKSCLKS---GTVKRVVYTSSNAAVFYNDK  142 (331)
Q Consensus        82 --------~~d~Vih~a~~~~~-------~~~~~~~~~~~~n~~~-~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~  142 (331)
                              ++|++||+|+....       +.+.+ +..+++|+.| ...+..++..+   +.-..++++||...+.... 
T Consensus        81 ~~~~~~~GkidiLvnnag~~~~~~~~~~~s~e~~-d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~~~~-  158 (270)
T KOG0725|consen   81 FAVEKFFGKIDILVNNAGALGLTGSILDLSEEVF-DKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVGPGP-  158 (270)
T ss_pred             HHHHHhCCCCCEEEEcCCcCCCCCChhhCCHHHH-HHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEeccccccCCC-
Confidence                    58999999985441       12233 4788899994 66666655533   1145788888865442110 


Q ss_pred             CCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCc-cHHHHHHHH
Q 020104          143 DVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAG-SVRSSLALI  218 (331)
Q Consensus       143 ~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~-~~~~~~~~~  218 (331)
                                         ..+ ..|+.+|.+.+++.+.++.+.   ++++..+-||.+..+........ ....+....
T Consensus       159 -------------------~~~-~~Y~~sK~al~~ltr~lA~El~~~gIRvN~v~PG~i~T~~~~~~~~~~~~~~~~~~~  218 (270)
T KOG0725|consen  159 -------------------GSG-VAYGVSKAALLQLTRSLAKELAKHGIRVNSVSPGLVKTSLRAAGLDDGEMEEFKEAT  218 (270)
T ss_pred             -------------------CCc-ccchhHHHHHHHHHHHHHHHHhhcCcEEEEeecCcEeCCccccccccchhhHHhhhh
Confidence                               111 479999999999999988654   89999999999998852111111 011111110


Q ss_pred             -hCCCcccccCCCccceeHHHHHHHHHHhhcCCC
Q 020104          219 -LGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD  251 (331)
Q Consensus       219 -~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~  251 (331)
                       .....+.+     .+...+|++.++.+++..+.
T Consensus       219 ~~~~~~p~g-----r~g~~~eva~~~~fla~~~a  247 (270)
T KOG0725|consen  219 DSKGAVPLG-----RVGTPEEVAEAAAFLASDDA  247 (270)
T ss_pred             ccccccccC-----CccCHHHHHHhHHhhcCccc
Confidence             01112222     78899999999999988754

>PRK08862 short chain dehydrogenase; Provisional

Probab=99.63  E-value=1.1e-14  Score=120.99  Aligned_cols=168  Identities=11%  Similarity=0.067  Sum_probs=118.3

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHH
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      |+..+++++||||++.||.++++.|+++|++|+++.|+.     +..+.. +.+.+.   ...+..+.+|+.|.+++.++
T Consensus         1 ~~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~-----~~l~~~~~~i~~~---~~~~~~~~~D~~~~~~~~~~   72 (227)
T PRK08862          1 MDIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQ-----SALKDTYEQCSAL---TDNVYSFQLKDFSQESIRHL   72 (227)
T ss_pred             CCCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCH-----HHHHHHHHHHHhc---CCCeEEEEccCCCHHHHHHH
Confidence            666678999999999999999999999999999999987     222221 112221   23567888999999888766


Q ss_pred             hc--------CccEEEEecccCC----CCCCCh--hhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCC
Q 020104           80 IA--------GCTGVLHVATPVD----FEDKEP--EEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYND  141 (331)
Q Consensus        80 ~~--------~~d~Vih~a~~~~----~~~~~~--~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~  141 (331)
                      ++        ++|++||+||...    ....+.  ....+++|+.++..+++.+    ++.+.-..+|++||...+    
T Consensus        73 ~~~~~~~~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~----  148 (227)
T PRK08862         73 FDAIEQQFNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHDDH----  148 (227)
T ss_pred             HHHHHHHhCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCCC----
Confidence            52        5899999997432    111111  1245667777766655443    333213589999984321    


Q ss_pred             CCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCC
Q 020104          142 KDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGP  201 (331)
Q Consensus       142 ~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~  201 (331)
                                           ++...|+.+|.+.+.+.+.++.+   ++++++.+.||.+-.+
T Consensus       149 ---------------------~~~~~Y~asKaal~~~~~~la~el~~~~Irvn~v~PG~i~t~  190 (227)
T PRK08862        149 ---------------------QDLTGVESSNALVSGFTHSWAKELTPFNIRVGGVVPSIFSAN  190 (227)
T ss_pred             ---------------------CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcCcCC
Confidence                                 01236999999999999887765   4799999999988766

>PRK08303 short chain dehydrogenase; Provisional

Probab=99.63  E-value=1.6e-14  Score=125.32  Aligned_cols=219  Identities=18%  Similarity=0.100  Sum_probs=135.4

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCccc--CCcccccccc-CCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEH--RNSKDLSFLK-NLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      +|+++||||++.||.++++.|++.|++|++++|+......  ...+.+..+. .+.....++.++.+|+.|++++.++++
T Consensus         8 ~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~   87 (305)
T PRK08303          8 GKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALVE   87 (305)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence            4789999999999999999999999999999997521000  0011111111 111112356788999999988887763


Q ss_pred             -------CccEEEEec-ccC------C-CC---CCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeec
Q 020104           82 -------GCTGVLHVA-TPV------D-FE---DKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFY  139 (331)
Q Consensus        82 -------~~d~Vih~a-~~~------~-~~---~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~  139 (331)
                             ++|++||+| +..      . ..   ..++ ...+++|+.++..+.+++..    .+ -.++|++||..... 
T Consensus        88 ~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~-~~~~~~n~~~~~~~~~~~lp~m~~~~-~g~IV~isS~~~~~-  164 (305)
T PRK08303         88 RIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKG-LRMLRLAIDTHLITSHFALPLLIRRP-GGLVVEITDGTAEY-  164 (305)
T ss_pred             HHHHHcCCccEEEECCcccccccccCCchhhcCHHHH-HHHHHHhhHHHHHHHHHHHHHhhhCC-CcEEEEECCccccc-
Confidence                   589999999 631      1 11   1122 25678888888777666543    33 36899999854321 


Q ss_pred             CCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHH
Q 020104          140 NDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLA  216 (331)
Q Consensus       140 ~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~  216 (331)
                      ....                  .+....|+.+|.+...+.+.++.+.   +++++.+.||.+-.+-........-.....
T Consensus       165 ~~~~------------------~~~~~~Y~asKaal~~lt~~La~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~  226 (305)
T PRK08303        165 NATH------------------YRLSVFYDLAKTSVNRLAFSLAHELAPHGATAVALTPGWLRSEMMLDAFGVTEENWRD  226 (305)
T ss_pred             cCcC------------------CCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEecCCccccHHHHHhhccCccchhh
Confidence            0000                  0112369999999999998887764   799999999988654210000000000000


Q ss_pred             HHhCCCcccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          217 LILGNREEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       217 ~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      ... ..+..     ..+...+|++.++++++..+
T Consensus       227 ~~~-~~p~~-----~~~~~peevA~~v~fL~s~~  254 (305)
T PRK08303        227 ALA-KEPHF-----AISETPRYVGRAVAALAADP  254 (305)
T ss_pred             hhc-ccccc-----ccCCCHHHHHHHHHHHHcCc
Confidence            000 00000     13457899999999999765

>PLN00015 protochlorophyllide reductase

Probab=99.63  E-value=2e-14  Score=125.33  Aligned_cols=234  Identities=15%  Similarity=0.097  Sum_probs=136.6

Q ss_pred             EEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc------
Q 020104            9 CVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA------   81 (331)
Q Consensus         9 lVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------   81 (331)
                      +||||++.||.+++++|+++| ++|++++|+.     +......  .++.....++.++.+|+.|.+++.++++      
T Consensus         1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~-----~~~~~~~--~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~   73 (308)
T PLN00015          1 IITGASSGLGLATAKALAETGKWHVVMACRDF-----LKAERAA--KSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSG   73 (308)
T ss_pred             CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCH-----HHHHHHH--HHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcC
Confidence            699999999999999999999 9999999876     2222111  1111112467888999999988877653      


Q ss_pred             -CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHh----cCC-ccEEEEecccceeecCCCCC-Cc-c
Q 020104           82 -GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLK----SGT-VKRVVYTSSNAAVFYNDKDV-DM-M  147 (331)
Q Consensus        82 -~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~~~v~~SS~~~~~~~~~~~-~~-~  147 (331)
                       ++|++||+||.....      ..+..+..+++|+.++..+++++..    .+. ..++|++||...+-...... .+ .
T Consensus        74 ~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~  153 (308)
T PLN00015         74 RPLDVLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKA  153 (308)
T ss_pred             CCCCEEEECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccCCCcc
Confidence             489999999864211      1112237889999997777665443    220 25999999975431000000 00 0


Q ss_pred             cCCCC----------CChhhh-hhcCCCCchhHhhHHHHHHHHHHHHHH----cCCcEEEeccCceeCCCCCCCCCccHH
Q 020104          148 DETFW----------SDVDYI-RKLDSWGKSYAISKTLTERAALEFAEE----HGLDLVTLIPSMVVGPFICPKFAGSVR  212 (331)
Q Consensus       148 ~E~~~----------~~~~~~-~~~~~~~~~Y~~~K~~~e~~~~~~~~~----~~~~~~ilRp~~v~G~~~~~~~~~~~~  212 (331)
                      ..++.          ...... .....+...|+.||.+.....+.++.+    .+++++.+.||.|..............
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~~~~~~~~~~~  233 (308)
T PLN00015        154 NLGDLRGLAGGLNGLNSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFR  233 (308)
T ss_pred             chhhhhhhhcccCCccchhhccccCCcHHHHHhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCccccccccHHHH
Confidence            00000          000000 000123457999999977766766654    379999999999954322111111111


Q ss_pred             HHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC--CCceE
Q 020104          213 SSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKGRY  256 (331)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~  256 (331)
                      ........  ...     ..+...++.|+.++.++....  .+|.|
T Consensus       234 ~~~~~~~~--~~~-----~~~~~pe~~a~~~~~l~~~~~~~~~G~~  272 (308)
T PLN00015        234 LLFPPFQK--YIT-----KGYVSEEEAGKRLAQVVSDPSLTKSGVY  272 (308)
T ss_pred             HHHHHHHH--HHh-----cccccHHHhhhhhhhhccccccCCCccc
Confidence            00000000  001     135678999999998887533  34444

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=99.62  E-value=9.4e-15  Score=113.32  Aligned_cols=167  Identities=17%  Similarity=0.213  Sum_probs=123.6

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |+..+.+||||||+..||..|+++|++.|.+|++++|+.        +++.   +.....+.+....+|+.|.++.++++
T Consensus         1 mk~tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e--------~~L~---e~~~~~p~~~t~v~Dv~d~~~~~~lv   69 (245)
T COG3967           1 MKTTGNTILITGGASGIGLALAKRFLELGNTVIICGRNE--------ERLA---EAKAENPEIHTEVCDVADRDSRRELV   69 (245)
T ss_pred             CcccCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcH--------HHHH---HHHhcCcchheeeecccchhhHHHHH
Confidence            777788999999999999999999999999999999998        2222   22222467788899999998777766


Q ss_pred             c-------CccEEEEecccCC---CC-CCCh---hhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCCC
Q 020104           81 A-------GCTGVLHVATPVD---FE-DKEP---EEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYNDK  142 (331)
Q Consensus        81 ~-------~~d~Vih~a~~~~---~~-~~~~---~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~  142 (331)
                      +       ..+++||+||...   +. ..+.   ..+.+++|+.++.+|..+.-.+    + -.-+|.+||.-.+.  +.
T Consensus        70 ewLkk~~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~-~a~IInVSSGLafv--Pm  146 (245)
T COG3967          70 EWLKKEYPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQP-EATIINVSSGLAFV--PM  146 (245)
T ss_pred             HHHHhhCCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CceEEEeccccccC--cc
Confidence            4       4799999999654   11 1111   1366789999988887766543    3 46899999987663  11


Q ss_pred             CCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCC
Q 020104          143 DVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGP  201 (331)
Q Consensus       143 ~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~  201 (331)
                      .      .            .|  .|..+|.+...+...+.++   .++.++=+-|+.|-.+
T Consensus       147 ~------~------------~P--vYcaTKAaiHsyt~aLR~Qlk~t~veVIE~~PP~V~t~  188 (245)
T COG3967         147 A------S------------TP--VYCATKAAIHSYTLALREQLKDTSVEVIELAPPLVDTT  188 (245)
T ss_pred             c------c------------cc--cchhhHHHHHHHHHHHHHHhhhcceEEEEecCCceecC
Confidence            1      0            11  5999999887776665544   3688888899988765

>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]

Probab=99.61  E-value=2.8e-14  Score=109.67  Aligned_cols=205  Identities=19%  Similarity=0.212  Sum_probs=137.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      .+..+||||+..||++++..|.++|++|.+.+++..    ...+....   +++. .+...+.+|+.+..+++..++   
T Consensus        14 sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~----~A~ata~~---L~g~-~~h~aF~~DVS~a~~v~~~l~e~~   85 (256)
T KOG1200|consen   14 SKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSA----AAEATAGD---LGGY-GDHSAFSCDVSKAHDVQNTLEEME   85 (256)
T ss_pred             cceeEEecCCchHHHHHHHHHHhcCcEEEEeecchh----hHHHHHhh---cCCC-CccceeeeccCcHHHHHHHHHHHH
Confidence            367999999999999999999999999999999872    22222222   2221 356778999999988877554   


Q ss_pred             ----CccEEEEecccCC------CCCCChhhHHHHHHHHHHHHHHHHHHhc----C-CccEEEEecccceeecCCCCCCc
Q 020104           82 ----GCTGVLHVATPVD------FEDKEPEEVITQRAINGTLGILKSCLKS----G-TVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 ----~~d~Vih~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~-~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                          .+++++||||...      ...++|. ..+.+|+.|+..+.+++.+.    + +--++|++||.  .|--..    
T Consensus        86 k~~g~psvlVncAGItrD~~Llrmkq~qwd-~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSI--VGkiGN----  158 (256)
T KOG1200|consen   86 KSLGTPSVLVNCAGITRDGLLLRMKQEQWD-SVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSI--VGKIGN----  158 (256)
T ss_pred             HhcCCCcEEEEcCccccccceeeccHHHHH-HHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhh--hccccc----
Confidence                5899999999755      2344565 89999999998888877654    1 12389999994  321110    


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHH----HHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTL----TERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~----~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                      ...+.|+.+|.-    .....++.++ .++++..+-||+|-.|-... ++   ...+..+.+ .
T Consensus       159 ----------------~GQtnYAAsK~GvIgftktaArEla~-knIrvN~VlPGFI~tpMT~~-mp---~~v~~ki~~-~  216 (256)
T KOG1200|consen  159 ----------------FGQTNYAASKGGVIGFTKTAARELAR-KNIRVNVVLPGFIATPMTEA-MP---PKVLDKILG-M  216 (256)
T ss_pred             ----------------ccchhhhhhcCceeeeeHHHHHHHhh-cCceEeEeccccccChhhhh-cC---HHHHHHHHc-c
Confidence                            113357777743    2223333333 48999999999998774221 22   112222222 2


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD  251 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~  251 (331)
                      .+.+     .+-..+|+|..+++++....
T Consensus       217 iPmg-----r~G~~EevA~~V~fLAS~~s  240 (256)
T KOG1200|consen  217 IPMG-----RLGEAEEVANLVLFLASDAS  240 (256)
T ss_pred             CCcc-----ccCCHHHHHHHHHHHhcccc
Confidence            2332     67789999999999986543

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.60  E-value=1.1e-13  Score=114.49  Aligned_cols=200  Identities=14%  Similarity=0.130  Sum_probs=139.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .++.||||||++.+|+.++.+|+++|..+.+.+.+..    ...+..+.....    ..+..+.+|+.+.+++.+..+  
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~----~~~etv~~~~~~----g~~~~y~cdis~~eei~~~a~~V  108 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQ----GNEETVKEIRKI----GEAKAYTCDISDREEIYRLAKKV  108 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEecccc----chHHHHHHHHhc----CceeEEEecCCCHHHHHHHHHHH
Confidence            3568999999999999999999999999988888873    233333333222    268899999999988776653  


Q ss_pred             -----CccEEEEecccCC----CC-CCChhhHHHHHHHHHHHH----HHHHHHhcCCccEEEEecccceeecCCCCCCcc
Q 020104           82 -----GCTGVLHVATPVD----FE-DKEPEEVITQRAINGTLG----ILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 -----~~d~Vih~a~~~~----~~-~~~~~~~~~~~n~~~~~~----l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                           .+|++||+||.+.    .. .++..+..+++|+.+...    ++..+.+.. -.++|.++|...+.+.       
T Consensus       109 k~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~-~GHIV~IaS~aG~~g~-------  180 (300)
T KOG1201|consen  109 KKEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENN-NGHIVTIASVAGLFGP-------  180 (300)
T ss_pred             HHhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcC-CceEEEehhhhcccCC-------
Confidence                 5899999999765    12 222335788999988655    555555655 5799999997755311       


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc------CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH------GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~------~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                                     +....|+.||.++.-..+.+..+.      +++++.+-|+.+=..-.               .+ 
T Consensus       181 ---------------~gl~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~Tgmf---------------~~-  229 (300)
T KOG1201|consen  181 ---------------AGLADYCASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFINTGMF---------------DG-  229 (300)
T ss_pred             ---------------ccchhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeecccccc---------------CC-
Confidence                           123469999998877777665432      68888888887642110               11 


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCCC
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPDA  252 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~  252 (331)
                      .  .+...-.+.+..+.+|+.++.++..+..
T Consensus       230 ~--~~~~~l~P~L~p~~va~~Iv~ai~~n~~  258 (300)
T KOG1201|consen  230 A--TPFPTLAPLLEPEYVAKRIVEAILTNQA  258 (300)
T ss_pred             C--CCCccccCCCCHHHHHHHHHHHHHcCCc
Confidence            0  1111113788999999999999887654

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=99.60  E-value=4.3e-15  Score=117.66  Aligned_cols=152  Identities=24%  Similarity=0.212  Sum_probs=113.2

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      |+++||||+|-||..++++|+++| +.|+++.|+..  .....+....+.   ....++.++++|+.+.++++++++   
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~--~~~~~~l~~~l~---~~~~~~~~~~~D~~~~~~~~~~~~~~~   75 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSED--SEGAQELIQELK---APGAKITFIECDLSDPESIRALIEEVI   75 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCH--HHHHHHHHHHHH---HTTSEEEEEESETTSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccc--cccccccccccc---ccccccccccccccccccccccccccc
Confidence            579999999999999999999995 68888888810  001111222222   223678999999999988887764   


Q ss_pred             ----CccEEEEecccCCCCC-----CChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCC
Q 020104           82 ----GCTGVLHVATPVDFED-----KEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFW  152 (331)
Q Consensus        82 ----~~d~Vih~a~~~~~~~-----~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~  152 (331)
                          .+|++||+|+......     .+.....+++|+.+...+.+++...+ -.++|++||......             
T Consensus        76 ~~~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~-~g~iv~~sS~~~~~~-------------  141 (167)
T PF00106_consen   76 KRFGPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQG-GGKIVNISSIAGVRG-------------  141 (167)
T ss_dssp             HHHSSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHT-TEEEEEEEEGGGTSS-------------
T ss_pred             cccccccccccccccccccccccccchhhhhccccccceeeeeeehheecc-ccceEEecchhhccC-------------
Confidence                6899999998765211     12224788999999999999998865 689999999765521             


Q ss_pred             CChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH
Q 020104          153 SDVDYIRKLDSWGKSYAISKTLTERAALEFAEE  185 (331)
Q Consensus       153 ~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~  185 (331)
                               .+....|+.+|.+.+.+++.++.+
T Consensus       142 ---------~~~~~~Y~askaal~~~~~~la~e  165 (167)
T PF00106_consen  142 ---------SPGMSAYSASKAALRGLTQSLAAE  165 (167)
T ss_dssp             ---------STTBHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------CCCChhHHHHHHHHHHHHHHHHHh
Confidence                     122458999999999999998875

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.55  E-value=1.4e-13  Score=118.21  Aligned_cols=184  Identities=21%  Similarity=0.144  Sum_probs=128.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      ..+.++|||||..||.++++.|+.+|.+|+..+|+..    ...+..+.+.. .....++.++++|+.+..+++...+  
T Consensus        34 ~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~----~~~~~~~~i~~-~~~~~~i~~~~lDLssl~SV~~fa~~~  108 (314)
T KOG1208|consen   34 SGKVALVTGATSGIGFETARELALRGAHVVLACRNEE----RGEEAKEQIQK-GKANQKIRVIQLDLSSLKSVRKFAEEF  108 (314)
T ss_pred             CCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHH----HHHHHHHHHHh-cCCCCceEEEECCCCCHHHHHHHHHHH
Confidence            3468999999999999999999999999999999972    12222233322 2234578889999999998887754  


Q ss_pred             -----CccEEEEecccCCCC---CCChhhHHHHHHHHHHHHHHHH----HHhcCCccEEEEecccceeecCCCC-CCccc
Q 020104           82 -----GCTGVLHVATPVDFE---DKEPEEVITQRAINGTLGILKS----CLKSGTVKRVVYTSSNAAVFYNDKD-VDMMD  148 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~---~~~~~~~~~~~n~~~~~~l~~~----~~~~~~~~~~v~~SS~~~~~~~~~~-~~~~~  148 (331)
                           ..|++||+||.+...   ..|-.+..+.+|..|...|.+.    ++... ..|+|++||... + .... ...-.
T Consensus       109 ~~~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~-~~RIV~vsS~~~-~-~~~~~~~l~~  185 (314)
T KOG1208|consen  109 KKKEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSA-PSRIVNVSSILG-G-GKIDLKDLSG  185 (314)
T ss_pred             HhcCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCC-CCCEEEEcCccc-c-Cccchhhccc
Confidence                 579999999976622   2233448889998886665554    45554 379999999653 1 1111 11111


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc--CCcEEEeccCceeCCCC
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH--GLDLVTLIPSMVVGPFI  203 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~--~~~~~ilRp~~v~G~~~  203 (331)
                      |....        ......|+.||++-.....+++++.  ++.+..+.||.+.+.+.
T Consensus       186 ~~~~~--------~~~~~~Y~~SKla~~l~~~eL~k~l~~~V~~~~~hPG~v~t~~l  234 (314)
T KOG1208|consen  186 EKAKL--------YSSDAAYALSKLANVLLANELAKRLKKGVTTYSVHPGVVKTTGL  234 (314)
T ss_pred             hhccC--------ccchhHHHHhHHHHHHHHHHHHHHhhcCceEEEECCCcccccce
Confidence            11100        0112259999999888888888776  59999999999988743

>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]

Probab=99.55  E-value=9.7e-14  Score=104.94  Aligned_cols=164  Identities=18%  Similarity=0.152  Sum_probs=122.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      +||..+|.||||-.|+.|++++++.+  .+|+++.|...    ..          +...+.+.....|...-+++...+.
T Consensus        17 q~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~----~d----------~at~k~v~q~~vDf~Kl~~~a~~~q   82 (238)
T KOG4039|consen   17 QNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRREL----PD----------PATDKVVAQVEVDFSKLSQLATNEQ   82 (238)
T ss_pred             hccceEEEeccccccHHHHHHHHhcccceeEEEEEeccC----CC----------ccccceeeeEEechHHHHHHHhhhc
Confidence            46789999999999999999999987  58999998751    01          1123567777888888788888888


Q ss_pred             CccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhc
Q 020104           82 GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKL  161 (331)
Q Consensus        82 ~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~  161 (331)
                      ++|+.+.+-|.+... ... +..+.+.-.....++++|++.| +++|+.+||.+.-    +                   
T Consensus        83 g~dV~FcaLgTTRgk-aGa-dgfykvDhDyvl~~A~~AKe~G-ck~fvLvSS~GAd----~-------------------  136 (238)
T KOG4039|consen   83 GPDVLFCALGTTRGK-AGA-DGFYKVDHDYVLQLAQAAKEKG-CKTFVLVSSAGAD----P-------------------  136 (238)
T ss_pred             CCceEEEeecccccc-ccc-CceEeechHHHHHHHHHHHhCC-CeEEEEEeccCCC----c-------------------
Confidence            999999988765421 111 2455666666778899999999 9999999996643    1                   


Q ss_pred             CCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccH
Q 020104          162 DSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSV  211 (331)
Q Consensus       162 ~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~  211 (331)
                       ..+-.|-..|...|+-+.++.-   -+++|+|||.+.|.+.......+.
T Consensus       137 -sSrFlY~k~KGEvE~~v~eL~F---~~~~i~RPG~ll~~R~esr~gefl  182 (238)
T KOG4039|consen  137 -SSRFLYMKMKGEVERDVIELDF---KHIIILRPGPLLGERTESRQGEFL  182 (238)
T ss_pred             -ccceeeeeccchhhhhhhhccc---cEEEEecCcceecccccccccchh
Confidence             1234699999999988876432   278999999999988766544443

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=99.54  E-value=1.9e-12  Score=111.63  Aligned_cols=218  Identities=11%  Similarity=0.003  Sum_probs=134.3

Q ss_pred             CCCCCceEEEecC--cchhHHHHHHHHHHCCCeEEEEecCCCCcccCC----ccccccccCCCCC--CCcEEEEeCCC--
Q 020104            1 MEEGKGRVCVTGG--TGFIASWLIMRLLDHGYSVTTTVRSELDPEHRN----SKDLSFLKNLPGA--SERLRIFHADL--   70 (331)
Q Consensus         1 M~~~~~~ilVtGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~D~--   70 (331)
                      |...+|++|||||  +..||.++++.|++.|.+|++ +|..++.....    ..++.........  ......+.+|+  
T Consensus         5 ~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~   83 (303)
T PLN02730          5 IDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVF   83 (303)
T ss_pred             cCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeecceec
Confidence            3445789999999  799999999999999999988 66542110000    0000000001000  01235678888  


Q ss_pred             CCCc------------------cHHHHhc-------CccEEEEecccCC--------CCCCChhhHHHHHHHHHHHHHHH
Q 020104           71 SHPD------------------GFDAAIA-------GCTGVLHVATPVD--------FEDKEPEEVITQRAINGTLGILK  117 (331)
Q Consensus        71 ~~~~------------------~~~~~~~-------~~d~Vih~a~~~~--------~~~~~~~~~~~~~n~~~~~~l~~  117 (331)
                      .+.+                  ++.++++       ++|++||+||...        ...+++ +..+++|+.++..+++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~-~~~~~vN~~~~~~l~~  162 (303)
T PLN02730         84 DTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGY-LAAISASSYSFVSLLQ  162 (303)
T ss_pred             CccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHH-HHHHHHHhHHHHHHHH
Confidence            4333                  4555543       5899999996321        112233 3788999999988888


Q ss_pred             HHHhc-CCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCCCC-chhHhhHHHHHHHHHHHHHHc----CCcEE
Q 020104          118 SCLKS-GTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWG-KSYAISKTLTERAALEFAEEH----GLDLV  191 (331)
Q Consensus       118 ~~~~~-~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~-~~Y~~~K~~~e~~~~~~~~~~----~~~~~  191 (331)
                      ++... ..-.++|++||.....   .                   .+.. ..|+.+|.+.+.+.+.++.+.    +++++
T Consensus       163 ~~~p~m~~~G~II~isS~a~~~---~-------------------~p~~~~~Y~asKaAl~~l~~~la~El~~~~gIrVn  220 (303)
T PLN02730        163 HFGPIMNPGGASISLTYIASER---I-------------------IPGYGGGMSSAKAALESDTRVLAFEAGRKYKIRVN  220 (303)
T ss_pred             HHHHHHhcCCEEEEEechhhcC---C-------------------CCCCchhhHHHHHHHHHHHHHHHHHhCcCCCeEEE
Confidence            77654 1025899999965431   0                   0112 269999999999999888753    68999


Q ss_pred             EeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          192 TLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       192 ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      .|-||.+-.+-... ... ......... ....+     ..+...+|++.++++++...
T Consensus       221 ~V~PG~v~T~~~~~-~~~-~~~~~~~~~-~~~pl-----~r~~~peevA~~~~fLaS~~  271 (303)
T PLN02730        221 TISAGPLGSRAAKA-IGF-IDDMIEYSY-ANAPL-----QKELTADEVGNAAAFLASPL  271 (303)
T ss_pred             EEeeCCccCchhhc-ccc-cHHHHHHHH-hcCCC-----CCCcCHHHHHHHHHHHhCcc
Confidence            99999887663221 110 011111111 11111     14568899999999999754

>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.54  E-value=4e-13  Score=117.18  Aligned_cols=211  Identities=21%  Similarity=0.135  Sum_probs=128.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh-c--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI-A--   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-~--   81 (331)
                      +++|||+||||.+|+-+++.|+++|+.|++++|+.     +...++..   ..........+..|.....+....+ +  
T Consensus        79 ~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~-----~~a~~~~~---~~~~d~~~~~v~~~~~~~~d~~~~~~~~~  150 (411)
T KOG1203|consen   79 PTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDE-----QKAEDLLG---VFFVDLGLQNVEADVVTAIDILKKLVEAV  150 (411)
T ss_pred             CCeEEEecCCCchhHHHHHHHHHCCCeeeeeccCh-----hhhhhhhc---ccccccccceeeeccccccchhhhhhhhc
Confidence            46899999999999999999999999999999998     34444322   1112245566666655544433333 2  


Q ss_pred             --CccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhh
Q 020104           82 --GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIR  159 (331)
Q Consensus        82 --~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~  159 (331)
                        ...+++-+++...... |.. .-+.+...|+.|++++|+..+ ++|+|++||++.-   ....     ..+.      
T Consensus       151 ~~~~~~v~~~~ggrp~~e-d~~-~p~~VD~~g~knlvdA~~~aG-vk~~vlv~si~~~---~~~~-----~~~~------  213 (411)
T KOG1203|consen  151 PKGVVIVIKGAGGRPEEE-DIV-TPEKVDYEGTKNLVDACKKAG-VKRVVLVGSIGGT---KFNQ-----PPNI------  213 (411)
T ss_pred             cccceeEEecccCCCCcc-cCC-CcceecHHHHHHHHHHHHHhC-CceEEEEEeecCc---ccCC-----Cchh------
Confidence              2346666655332111 111 234577889999999999999 9999999985542   2111     0000      


Q ss_pred             hcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHHHH
Q 020104          160 KLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDV  239 (331)
Q Consensus       160 ~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~  239 (331)
                        ......+-.+|+.+|+.+.+    .+++++|+||+...-.......        ......+..+...+.--.+.-.|+
T Consensus       214 --~~~~~~~~~~k~~~e~~~~~----Sgl~ytiIR~g~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~r~~v  279 (411)
T KOG1203|consen  214 --LLLNGLVLKAKLKAEKFLQD----SGLPYTIIRPGGLEQDTGGQRE--------VVVDDEKELLTVDGGAYSISRLDV  279 (411)
T ss_pred             --hhhhhhhhHHHHhHHHHHHh----cCCCcEEEeccccccCCCCcce--------ecccCccccccccccceeeehhhH
Confidence              00011234677777777764    7999999999987643221100        000111111111110126778899


Q ss_pred             HHHHHHhhcCCCCCc
Q 020104          240 ARAHIFLLEYPDAKG  254 (331)
Q Consensus       240 a~~~~~~~~~~~~~~  254 (331)
                      |+..+.++.++....
T Consensus       280 ael~~~all~~~~~~  294 (411)
T KOG1203|consen  280 AELVAKALLNEAATF  294 (411)
T ss_pred             HHHHHHHHhhhhhcc
Confidence            999999888776543

>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]

Probab=99.52  E-value=2.9e-13  Score=106.94  Aligned_cols=220  Identities=20%  Similarity=0.146  Sum_probs=146.3

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |...+|++++|||.|.||..+.++|+++|..+.++.-+.     +..+....|++.. ....+-++++|+.+..++++++
T Consensus         1 m~~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~-----En~~a~akL~ai~-p~~~v~F~~~DVt~~~~~~~~f   74 (261)
T KOG4169|consen    1 MDLTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSE-----ENPEAIAKLQAIN-PSVSVIFIKCDVTNRGDLEAAF   74 (261)
T ss_pred             CcccCceEEEecCCchhhHHHHHHHHHcCchheeehhhh-----hCHHHHHHHhccC-CCceEEEEEeccccHHHHHHHH
Confidence            566789999999999999999999999998888777666     4555555554432 1256889999999999888887


Q ss_pred             c-------CccEEEEecccCCCCCCChhhHHHHHHHHH----HHHHHHHHHhcC--CccEEEEecccceeecCCCCCCcc
Q 020104           81 A-------GCTGVLHVATPVDFEDKEPEEVITQRAING----TLGILKSCLKSG--TVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        81 ~-------~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~----~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                      +       .+|++||.||..+  ..|++ ..+.+|+.|    |...+.++.+..  .-.-+|+.||  |+|-.+.     
T Consensus        75 ~ki~~~fg~iDIlINgAGi~~--dkd~e-~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsS--v~GL~P~-----  144 (261)
T KOG4169|consen   75 DKILATFGTIDILINGAGILD--DKDWE-RTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSS--VAGLDPM-----  144 (261)
T ss_pred             HHHHHHhCceEEEEccccccc--chhHH-HhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEecc--ccccCcc-----
Confidence            5       4899999999865  45666 888999665    566666666542  2357999999  4431111     


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHH-----HHHHcCCcEEEeccCceeCCCCC-----CCCCccHHHHHHH
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALE-----FAEEHGLDLVTLIPSMVVGPFIC-----PKFAGSVRSSLAL  217 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~-----~~~~~~~~~~ilRp~~v~G~~~~-----~~~~~~~~~~~~~  217 (331)
                                     +-...|+.||...-...+.     +..+.|+++..+.||.+-..-..     ......-..+...
T Consensus       145 ---------------p~~pVY~AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~t~t~l~~~~~~~~~~~e~~~~~~~~  209 (261)
T KOG4169|consen  145 ---------------PVFPVYAASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGFTRTDLAENIDASGGYLEYSDSIKEA  209 (261)
T ss_pred             ---------------ccchhhhhcccceeeeehhhhhhhhHhhcCEEEEEECCCcchHHHHHHHHhcCCcccccHHHHHH
Confidence                           1123699999755444444     33456999999999866321000     0000000011111


Q ss_pred             HhCCCcccccCCCccceeHHHHHHHHHHhhcCCCCCceEEEecc
Q 020104          218 ILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDAKGRYICSSH  261 (331)
Q Consensus       218 ~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~~~  261 (331)
                      +...          .--...++++.++.+++.+..+.+|.++..
T Consensus       210 l~~~----------~~q~~~~~a~~~v~aiE~~~NGaiw~v~~g  243 (261)
T KOG4169|consen  210 LERA----------PKQSPACCAINIVNAIEYPKNGAIWKVDSG  243 (261)
T ss_pred             HHHc----------ccCCHHHHHHHHHHHHhhccCCcEEEEecC
Confidence            1111          223456888999999998777778887543

>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=99.52  E-value=3.1e-13  Score=113.62  Aligned_cols=199  Identities=17%  Similarity=0.128  Sum_probs=129.6

Q ss_pred             HHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc----CccEEEEecccCCCC
Q 020104           21 LIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA----GCTGVLHVATPVDFE   96 (331)
Q Consensus        21 l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~d~Vih~a~~~~~~   96 (331)
                      +++.|+++|++|++++|+..     ..             ...+++++|+.|.+++.++++    ++|+|||+||...  
T Consensus         1 ~a~~l~~~G~~Vv~~~r~~~-----~~-------------~~~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~~--   60 (241)
T PRK12428          1 TARLLRFLGARVIGVDRREP-----GM-------------TLDGFIQADLGDPASIDAAVAALPGRIDALFNIAGVPG--   60 (241)
T ss_pred             ChHHHHhCCCEEEEEeCCcc-----hh-------------hhhHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCCC--
Confidence            47889999999999999872     11             012467899999998888875    5899999998653  


Q ss_pred             CCChhhHHHHHHHHHHHHHHHHHHhc-CCccEEEEecccceeecCCCCCCcccCCC---CCChhhh----hhcCCCCchh
Q 020104           97 DKEPEEVITQRAINGTLGILKSCLKS-GTVKRVVYTSSNAAVFYNDKDVDMMDETF---WSDVDYI----RKLDSWGKSY  168 (331)
Q Consensus        97 ~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~~~~~E~~---~~~~~~~----~~~~~~~~~Y  168 (331)
                      ..+.. ..+++|+.++..+++++... ....++|++||...++...  ..+..|.-   ....+..    ..+.++.++|
T Consensus        61 ~~~~~-~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y  137 (241)
T PRK12428         61 TAPVE-LVARVNFLGLRHLTEALLPRMAPGGAIVNVASLAGAEWPQ--RLELHKALAATASFDEGAAWLAAHPVALATGY  137 (241)
T ss_pred             CCCHH-HhhhhchHHHHHHHHHHHHhccCCcEEEEeCcHHhhcccc--chHHHHhhhccchHHHHHHhhhccCCCcccHH
Confidence            23344 89999999999999998764 1136999999988774211  11111110   0000000    0112335689


Q ss_pred             HhhHHHHHHHHHHHH-H---HcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHHHHHHHHH
Q 020104          169 AISKTLTERAALEFA-E---EHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHI  244 (331)
Q Consensus       169 ~~~K~~~e~~~~~~~-~---~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~  244 (331)
                      +.+|.+.+.+.+.++ .   .++++++.++||.+.++-.... ......  ..........     ..+...+|+++++.
T Consensus       138 ~~sK~a~~~~~~~la~~e~~~~girvn~v~PG~v~T~~~~~~-~~~~~~--~~~~~~~~~~-----~~~~~pe~va~~~~  209 (241)
T PRK12428        138 QLSKEALILWTMRQAQPWFGARGIRVNCVAPGPVFTPILGDF-RSMLGQ--ERVDSDAKRM-----GRPATADEQAAVLV  209 (241)
T ss_pred             HHHHHHHHHHHHHHHHHhhhccCeEEEEeecCCccCcccccc-hhhhhh--Hhhhhccccc-----CCCCCHHHHHHHHH
Confidence            999999999998887 3   3489999999999988743211 000000  0000000111     24678899999999


Q ss_pred             HhhcCC
Q 020104          245 FLLEYP  250 (331)
Q Consensus       245 ~~~~~~  250 (331)
                      +++..+
T Consensus       210 ~l~s~~  215 (241)
T PRK12428        210 FLCSDA  215 (241)
T ss_pred             HHcChh
Confidence            988643

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.52  E-value=6.1e-14  Score=109.36  Aligned_cols=165  Identities=20%  Similarity=0.186  Sum_probs=122.5

Q ss_pred             CceEEEecC-cchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            5 KGRVCVTGG-TGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         5 ~~~ilVtGa-tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .++|||||+ .|.||.+|++.|.++||+|+++.|+.     +.-..+..       ..++.....|+.+++++.....  
T Consensus         7 ~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~-----e~M~~L~~-------~~gl~~~kLDV~~~~~V~~v~~ev   74 (289)
T KOG1209|consen    7 PKKVLITGCSSGGIGYALAKEFARNGYLVYATARRL-----EPMAQLAI-------QFGLKPYKLDVSKPEEVVTVSGEV   74 (289)
T ss_pred             CCeEEEeecCCcchhHHHHHHHHhCCeEEEEEcccc-----chHhhHHH-------hhCCeeEEeccCChHHHHHHHHHH
Confidence            468999987 79999999999999999999999988     23222221       1468899999999998887653  


Q ss_pred             ------CccEEEEecccCC-C-----CCCChhhHHHHHHHHHHHHHHHHHHhc--CCccEEEEecccceeecCCCCCCcc
Q 020104           82 ------GCTGVLHVATPVD-F-----EDKEPEEVITQRAINGTLGILKSCLKS--GTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 ------~~d~Vih~a~~~~-~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                            +.|+++|+||..- .     ...+. +..+++|+-|..++.++....  .....+|+++|..++..        
T Consensus        75 r~~~~Gkld~L~NNAG~~C~~Pa~d~~i~av-e~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~vp--------  145 (289)
T KOG1209|consen   75 RANPDGKLDLLYNNAGQSCTFPALDATIAAV-EQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGVVP--------  145 (289)
T ss_pred             hhCCCCceEEEEcCCCCCcccccccCCHHHH-HhhhccceeeeehHHHHHHHHHHHccceEEEecceeEEec--------
Confidence                  4799999998422 1     11122 378899999988888877632  11358999999888741        


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCC
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFIC  204 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~  204 (331)
                                    .++.+.|..||.+...+.+.+.-+   +|++++.+.+|.|-..-.+
T Consensus       146 --------------fpf~~iYsAsKAAihay~~tLrlEl~PFgv~Vin~itGGv~T~Ia~  191 (289)
T KOG1209|consen  146 --------------FPFGSIYSASKAAIHAYARTLRLELKPFGVRVINAITGGVATDIAD  191 (289)
T ss_pred             --------------cchhhhhhHHHHHHHHhhhhcEEeeeccccEEEEecccceeccccc
Confidence                          244668999999988888776543   3788888888888655433

>KOG4288 consensus Predicted oxidoreductase [General function prediction only]

Probab=99.51  E-value=4.9e-13  Score=105.56  Aligned_cols=216  Identities=20%  Similarity=0.177  Sum_probs=149.8

Q ss_pred             eEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCccEE
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTGV   86 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V   86 (331)
                      +.++.|+.||.|+++++.....++.|-.+.|+.     . ...++.      -...+..+.+|.....-+...+.++..+
T Consensus        54 ~tlvlggnpfsgs~vlk~A~~vv~svgilsen~-----~-k~~l~s------w~~~vswh~gnsfssn~~k~~l~g~t~v  121 (283)
T KOG4288|consen   54 WTLVLGGNPFSGSEVLKNATNVVHSVGILSENE-----N-KQTLSS------WPTYVSWHRGNSFSSNPNKLKLSGPTFV  121 (283)
T ss_pred             HHhhhcCCCcchHHHHHHHHhhceeeeEeeccc-----C-cchhhC------CCcccchhhccccccCcchhhhcCCccc
Confidence            578999999999999999999999999999986     1 111111      1135666778877666677778889999


Q ss_pred             EEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCCCCc
Q 020104           87 LHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGK  166 (331)
Q Consensus        87 ih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~  166 (331)
                      +-+++...    +.. .+..+|-....+-.+++++++ +++|+|+|-.. ++  -.                   +.-..
T Consensus       122 ~e~~ggfg----n~~-~m~~ing~ani~a~kaa~~~g-v~~fvyISa~d-~~--~~-------------------~~i~r  173 (283)
T KOG4288|consen  122 YEMMGGFG----NII-LMDRINGTANINAVKAAAKAG-VPRFVYISAHD-FG--LP-------------------PLIPR  173 (283)
T ss_pred             HHHhcCcc----chH-HHHHhccHhhHHHHHHHHHcC-CceEEEEEhhh-cC--CC-------------------Cccch
Confidence            98887533    222 677888888889999999999 99999999633 32  11                   01123


Q ss_pred             hhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHH---H-HHHhCCC---cccccCCC--ccceeHH
Q 020104          167 SYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSS---L-ALILGNR---EEYGFLLN--TSMVHVD  237 (331)
Q Consensus       167 ~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~---~-~~~~~~~---~~~~~~~~--~~~i~v~  237 (331)
                      .|-..|+.+|..+.+.   ++.+-++||||++||.+.-......+..+   + .......   ..++.-+.  .+.+.++
T Consensus       174 GY~~gKR~AE~Ell~~---~~~rgiilRPGFiyg~R~v~g~~~pL~~vg~pl~~~~~~a~k~~~kLp~lg~l~~ppvnve  250 (283)
T KOG4288|consen  174 GYIEGKREAEAELLKK---FRFRGIILRPGFIYGTRNVGGIKSPLHTVGEPLEMVLKFALKPLNKLPLLGPLLAPPVNVE  250 (283)
T ss_pred             hhhccchHHHHHHHHh---cCCCceeeccceeecccccCcccccHHhhhhhHHHHHHhhhchhhcCcccccccCCCcCHH
Confidence            7999999999988864   56899999999999985433222111111   1 1111111   12222222  5899999


Q ss_pred             HHHHHHHHhhcCCCCCceEEEeccccCHHHHHHHH
Q 020104          238 DVARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFL  272 (331)
Q Consensus       238 D~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~i  272 (331)
                      ++|.+.+.+++++...|+       +++.|+.+.-
T Consensus       251 ~VA~aal~ai~dp~f~Gv-------v~i~eI~~~a  278 (283)
T KOG4288|consen  251 SVALAALKAIEDPDFKGV-------VTIEEIKKAA  278 (283)
T ss_pred             HHHHHHHHhccCCCcCce-------eeHHHHHHHH
Confidence            999999999999865544       4555555543

>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=99.47  E-value=2.1e-12  Score=109.35  Aligned_cols=173  Identities=20%  Similarity=0.201  Sum_probs=119.9

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCC-CcEEEEeCCCCC-CccHHH
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGAS-ERLRIFHADLSH-PDGFDA   78 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~-~~~~~~   78 (331)
                      |..++|+||||||++.||..+++.|++.|+.|+++.|.....   ..+.......  ... ..+.+..+|+.+ .+++..
T Consensus         1 ~~~~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~Dvs~~~~~v~~   75 (251)
T COG1028           1 MDLSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEE---AAEALAAAIK--EAGGGRAAAVAADVSDDEESVEA   75 (251)
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchh---hHHHHHHHHH--hcCCCcEEEEEecCCCCHHHHHH
Confidence            455678999999999999999999999999999888876210   0111111111  000 256778899998 777666


Q ss_pred             Hhc-------CccEEEEecccCCC-------CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCC
Q 020104           79 AIA-------GCTGVLHVATPVDF-------EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        79 ~~~-------~~d~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                      +++       ++|++||+|+....       ..++. +..+++|+.+...+.+++...-..+++|++||.... ..... 
T Consensus        76 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~-~~~~~~n~~g~~~~~~~~~~~~~~~~Iv~isS~~~~-~~~~~-  152 (251)
T COG1028          76 LVAAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDW-DRVIDVNLLGAFLLTRAALPLMKKQRIVNISSVAGL-GGPPG-  152 (251)
T ss_pred             HHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHH-HHHHHHhHHHHHHHHHHHHHhhhhCeEEEECCchhc-CCCCC-
Confidence            553       48999999986431       11223 488999999988888854443201299999996643 11110 


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGP  201 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~  201 (331)
                                          ...|+.+|.+.+.+.+.++.+   ++++++.+.||.+-.+
T Consensus       153 --------------------~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~PG~~~t~  192 (251)
T COG1028         153 --------------------QAAYAASKAALIGLTKALALELAPRGIRVNAVAPGYIDTP  192 (251)
T ss_pred             --------------------cchHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeccCCCc
Confidence                                147999999999888887754   4799999999955433

>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=99.46  E-value=7.1e-13  Score=106.11  Aligned_cols=163  Identities=20%  Similarity=0.266  Sum_probs=110.4

Q ss_pred             eEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc----
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA----   81 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----   81 (331)
                      ++|||||+|-||..+++.|++++ .+|+++.|+..    ...+....+.++......+.++.+|+.|++++.++++    
T Consensus         2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~----~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~   77 (181)
T PF08659_consen    2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGA----PSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQ   77 (181)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGG----GSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHT
T ss_pred             EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCC----ccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHh
Confidence            68999999999999999999997 58999999831    1222222222222223578999999999999999875    


Q ss_pred             ---CccEEEEecccCCC---CCCCh--hhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCC
Q 020104           82 ---GCTGVLHVATPVDF---EDKEP--EEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWS  153 (331)
Q Consensus        82 ---~~d~Vih~a~~~~~---~~~~~--~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~  153 (331)
                         .++.|||+|+....   ...++  .+..+..-+.++.+|.++..... ...||.+||.....+..            
T Consensus        78 ~~~~i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~-l~~~i~~SSis~~~G~~------------  144 (181)
T PF08659_consen   78 RFGPIDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRP-LDFFILFSSISSLLGGP------------  144 (181)
T ss_dssp             TSS-EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTT-TSEEEEEEEHHHHTT-T------------
T ss_pred             ccCCcceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCC-CCeEEEECChhHhccCc------------
Confidence               46899999986541   11121  23566777899999999999877 89999999987653221            


Q ss_pred             ChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCc
Q 020104          154 DVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSM  197 (331)
Q Consensus       154 ~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~  197 (331)
                                -...|+..-...+.+...... .+.++..+.-+.
T Consensus       145 ----------gq~~YaaAN~~lda~a~~~~~-~g~~~~sI~wg~  177 (181)
T PF08659_consen  145 ----------GQSAYAAANAFLDALARQRRS-RGLPAVSINWGA  177 (181)
T ss_dssp             ----------TBHHHHHHHHHHHHHHHHHHH-TTSEEEEEEE-E
T ss_pred             ----------chHhHHHHHHHHHHHHHHHHh-CCCCEEEEEccc
Confidence                      145799998888888776544 588888776553

It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....

>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B

Probab=99.46  E-value=3.4e-13  Score=113.43  Aligned_cols=209  Identities=18%  Similarity=0.157  Sum_probs=139.2

Q ss_pred             cCc--chhHHHHHHHHHHCCCeEEEEecCCCCcccCC-ccccccccCCCCCCCcEEEEeCCCCCCccHHHHh--------
Q 020104           12 GGT--GFIASWLIMRLLDHGYSVTTTVRSELDPEHRN-SKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI--------   80 (331)
Q Consensus        12 Gat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~--------   80 (331)
                      |++  +.||.+++++|+++|++|++++|+.     +. ...+..+.+.    .+.+++.+|+.+.+++.+++        
T Consensus         1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~-----~~~~~~~~~l~~~----~~~~~~~~D~~~~~~v~~~~~~~~~~~~   71 (241)
T PF13561_consen    1 GAGSSSGIGRAIARALAEEGANVILTDRNE-----EKLADALEELAKE----YGAEVIQCDLSDEESVEALFDEAVERFG   71 (241)
T ss_dssp             STSSTSHHHHHHHHHHHHTTEEEEEEESSH-----HHHHHHHHHHHHH----TTSEEEESCTTSHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCChHHHHHHHHHHCCCEEEEEeCCh-----HHHHHHHHHHHHH----cCCceEeecCcchHHHHHHHHHHHhhcC
Confidence            666  9999999999999999999999998     22 1223333221    12346999999998887774        


Q ss_pred             cCccEEEEecccCCC----C------CCChhhHHHHHHHHHHHHHHHHHHhc-CCccEEEEecccceeecCCCCCCcccC
Q 020104           81 AGCTGVLHVATPVDF----E------DKEPEEVITQRAINGTLGILKSCLKS-GTVKRVVYTSSNAAVFYNDKDVDMMDE  149 (331)
Q Consensus        81 ~~~d~Vih~a~~~~~----~------~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~~~~~E  149 (331)
                      .++|++||+++....    .      .+++ +..+++|+.+...+++++.+. ..-.++|++||......          
T Consensus        72 g~iD~lV~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~~~----------  140 (241)
T PF13561_consen   72 GRIDILVNNAGISPPSNVEKPLLDLSEEDW-DKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQRP----------  140 (241)
T ss_dssp             SSESEEEEEEESCTGGGTSSSGGGSHHHHH-HHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGTSB----------
T ss_pred             CCeEEEEecccccccccCCCChHhCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhccc----------
Confidence            358999999976543    1      1122 377888988888888877543 01258999998654321          


Q ss_pred             CCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH----cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCccc
Q 020104          150 TFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE----HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEY  225 (331)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~----~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  225 (331)
                                  .+....|+.+|.+.+.+++.++.+    ++++++.|.||.+..+.... . ........... ...++
T Consensus       141 ------------~~~~~~y~~sKaal~~l~r~lA~el~~~~gIrVN~V~pG~i~t~~~~~-~-~~~~~~~~~~~-~~~pl  205 (241)
T PF13561_consen  141 ------------MPGYSAYSASKAALEGLTRSLAKELAPKKGIRVNAVSPGPIETPMTER-I-PGNEEFLEELK-KRIPL  205 (241)
T ss_dssp             ------------STTTHHHHHHHHHHHHHHHHHHHHHGGHGTEEEEEEEESSBSSHHHHH-H-HTHHHHHHHHH-HHSTT
T ss_pred             ------------CccchhhHHHHHHHHHHHHHHHHHhccccCeeeeeecccceeccchhc-c-ccccchhhhhh-hhhcc
Confidence                        122347999999999999988764    47999999999887653110 0 00111111111 11222


Q ss_pred             ccCCCccceeHHHHHHHHHHhhcCC--CCCceE-EEec
Q 020104          226 GFLLNTSMVHVDDVARAHIFLLEYP--DAKGRY-ICSS  260 (331)
Q Consensus       226 ~~~~~~~~i~v~D~a~~~~~~~~~~--~~~~~~-~~~~  260 (331)
                      +     .+...+|+|.++++++...  ...|.. .+++
T Consensus       206 ~-----r~~~~~evA~~v~fL~s~~a~~itG~~i~vDG  238 (241)
T PF13561_consen  206 G-----RLGTPEEVANAVLFLASDAASYITGQVIPVDG  238 (241)
T ss_dssp             S-----SHBEHHHHHHHHHHHHSGGGTTGTSEEEEEST
T ss_pred             C-----CCcCHHHHHHHHHHHhCccccCccCCeEEECC
Confidence            2     6779999999999999865  345544 4544

...

>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]

Probab=99.41  E-value=8.6e-12  Score=103.83  Aligned_cols=162  Identities=22%  Similarity=0.254  Sum_probs=118.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      ..|-|||||+-...|..|+++|.++|+.|++-...+     +..+.+.....    .++...++.|++++++++++.+  
T Consensus        28 ~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~-----~gae~L~~~~~----s~rl~t~~LDVT~~esi~~a~~~V   98 (322)
T KOG1610|consen   28 SDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTE-----EGAESLRGETK----SPRLRTLQLDVTKPESVKEAAQWV   98 (322)
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecC-----chHHHHhhhhc----CCcceeEeeccCCHHHHHHHHHHH
Confidence            346799999999999999999999999999998665     33333332221    3688889999999999988764  


Q ss_pred             -------CccEEEEecccCC-CCCC-----ChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCCC
Q 020104           82 -------GCTGVLHVATPVD-FEDK-----EPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 -------~~d~Vih~a~~~~-~~~~-----~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                             +.=.|||+||... .+..     +......++|+.|+..+..+.    +++.  .|+|++||.+---   .  
T Consensus        99 ~~~l~~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~ar--GRvVnvsS~~GR~---~--  171 (322)
T KOG1610|consen   99 KKHLGEDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRAR--GRVVNVSSVLGRV---A--  171 (322)
T ss_pred             HHhcccccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhcc--CeEEEecccccCc---c--
Confidence                   4579999998543 2111     222478899988877666655    4443  6999999955321   0  


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCce
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMV  198 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v  198 (331)
                                       .+-..+|+.||.+.|.....+..+   +|+.+.++-||.+
T Consensus       172 -----------------~p~~g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG~f  211 (322)
T KOG1610|consen  172 -----------------LPALGPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPGFF  211 (322)
T ss_pred             -----------------CcccccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccCcc
Confidence                             112457999999999888776654   4999999999933

>KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only]

Probab=99.41  E-value=6.1e-12  Score=99.50  Aligned_cols=207  Identities=14%  Similarity=0.147  Sum_probs=132.9

Q ss_pred             CceEEEecCcchhHHHHHHHHHHC-CCeEEEEec-CCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDH-GYSVTTTVR-SELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      ++.|+||||+..||-.|+++|++. |.++++..| ++     +..  .+.+......++++.+++.|+++.+++..+.. 
T Consensus         3 pksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~-----e~a--~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~   75 (249)
T KOG1611|consen    3 PKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDP-----EKA--ATELALKSKSDSRVHIIQLDVTCDESIDNFVQE   75 (249)
T ss_pred             CccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCCh-----HHh--hHHHHHhhccCCceEEEEEecccHHHHHHHHHH
Confidence            357999999999999999999975 677766554 45     332  11122222235899999999999887776653 


Q ss_pred             --------CccEEEEecccCC-CC-----CCChhhHHHHHHHHHHHHHHHH----HHhcC----------CccEEEEecc
Q 020104           82 --------GCTGVLHVATPVD-FE-----DKEPEEVITQRAINGTLGILKS----CLKSG----------TVKRVVYTSS  133 (331)
Q Consensus        82 --------~~d~Vih~a~~~~-~~-----~~~~~~~~~~~n~~~~~~l~~~----~~~~~----------~~~~~v~~SS  133 (331)
                              +.|++|++||... +.     .+......+++|..++..+.++    .++..          ....+|++||
T Consensus        76 V~~iVg~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS  155 (249)
T KOG1611|consen   76 VEKIVGSDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISS  155 (249)
T ss_pred             HHhhcccCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeec
Confidence                    5799999998544 11     1111237888997776555553    33332          1227899998


Q ss_pred             cceeecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCcc
Q 020104          134 NAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGS  210 (331)
Q Consensus       134 ~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~  210 (331)
                      .+.-- +..                  .+.+...|..||.+.-...+..+-+.   ++-++.+.||+|-..-..      
T Consensus       156 ~~~s~-~~~------------------~~~~~~AYrmSKaAlN~f~ksls~dL~~~~ilv~sihPGwV~TDMgg------  210 (249)
T KOG1611|consen  156 SAGSI-GGF------------------RPGGLSAYRMSKAALNMFAKSLSVDLKDDHILVVSIHPGWVQTDMGG------  210 (249)
T ss_pred             ccccc-CCC------------------CCcchhhhHhhHHHHHHHHHHhhhhhcCCcEEEEEecCCeEEcCCCC------
Confidence            65321 100                  02335689999999998888877654   566778899988643111      


Q ss_pred             HHHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcC--CCC-CceEEEeccc
Q 020104          211 VRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEY--PDA-KGRYICSSHT  262 (331)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~--~~~-~~~~~~~~~~  262 (331)
                                         .-..+.+++-+.-++..+.+  +.. |+.||-.+.+
T Consensus       211 -------------------~~a~ltveeSts~l~~~i~kL~~~hnG~ffn~dlt~  246 (249)
T KOG1611|consen  211 -------------------KKAALTVEESTSKLLASINKLKNEHNGGFFNRDGTP  246 (249)
T ss_pred             -------------------CCcccchhhhHHHHHHHHHhcCcccCcceEccCCCc
Confidence                               01456777777777776653  223 4455654433

>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.40  E-value=3.3e-11  Score=103.89  Aligned_cols=216  Identities=8%  Similarity=-0.052  Sum_probs=125.5

Q ss_pred             CCceEEEecCc--chhHHHHHHHHHHCCCeEEEEecCCC-Ccc--cCCcccccccc-CC-------------CCCCCcEE
Q 020104            4 GKGRVCVTGGT--GFIASWLIMRLLDHGYSVTTTVRSEL-DPE--HRNSKDLSFLK-NL-------------PGASERLR   64 (331)
Q Consensus         4 ~~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~-~~~--~~~~~~~~~~~-~~-------------~~~~~~~~   64 (331)
                      .+|+++||||+  ..||+++++.|+++|++|++..|.+. +..  .....+..... ..             .......+
T Consensus         7 ~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~~~~   86 (299)
T PRK06300          7 TGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWVPIYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDASFDTPE   86 (299)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEeccchhhhhhhhcccccccccccccccchhhhhhHHHhhhhcCCCE
Confidence            46789999995  89999999999999999998664310 000  00000000000 00             00001112


Q ss_pred             EEeCCCCCC--------ccHHHHh-------cCccEEEEecccCC--------CCCCChhhHHHHHHHHHHHHHHHHHHh
Q 020104           65 IFHADLSHP--------DGFDAAI-------AGCTGVLHVATPVD--------FEDKEPEEVITQRAINGTLGILKSCLK  121 (331)
Q Consensus        65 ~~~~D~~~~--------~~~~~~~-------~~~d~Vih~a~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~  121 (331)
                      -+..|+++.        +++++++       .++|++||+||...        ...+++. ..+++|+.++.++++++..
T Consensus        87 ~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~-~~~~vNl~g~~~l~~a~~p  165 (299)
T PRK06300         87 DVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYL-AALSTSSYSFVSLLSHFGP  165 (299)
T ss_pred             EeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHH-HHHHHHhHHHHHHHHHHHH
Confidence            222222221        1234433       25899999997421        1112333 7889999999999888775


Q ss_pred             c-CCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCCCC-chhHhhHHHHHHHHHHHHHHc----CCcEEEecc
Q 020104          122 S-GTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWG-KSYAISKTLTERAALEFAEEH----GLDLVTLIP  195 (331)
Q Consensus       122 ~-~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~-~~Y~~~K~~~e~~~~~~~~~~----~~~~~ilRp  195 (331)
                      . ..-.++|++||..... + .                    +.. ..|+.+|.+.+.+.+.++.+.    |++++.+.|
T Consensus       166 ~m~~~G~ii~iss~~~~~-~-~--------------------p~~~~~Y~asKaAl~~lt~~la~el~~~~gIrVn~V~P  223 (299)
T PRK06300        166 IMNPGGSTISLTYLASMR-A-V--------------------PGYGGGMSSAKAALESDTKVLAWEAGRRWGIRVNTISA  223 (299)
T ss_pred             HhhcCCeEEEEeehhhcC-c-C--------------------CCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEe
Confidence            4 1124789998854331 0 0                    111 269999999999999888652    799999999


Q ss_pred             CceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          196 SMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       196 ~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      |.+-.+.... ... ........... ...     ..+...+|+++++.+++...
T Consensus       224 G~v~T~~~~~-~~~-~~~~~~~~~~~-~p~-----~r~~~peevA~~v~~L~s~~  270 (299)
T PRK06300        224 GPLASRAGKA-IGF-IERMVDYYQDW-APL-----PEPMEAEQVGAAAAFLVSPL  270 (299)
T ss_pred             CCccChhhhc-ccc-cHHHHHHHHhc-CCC-----CCCcCHHHHHHHHHHHhCcc
Confidence            9887653211 000 01111111111 111     14668899999999998753

>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.39  E-value=5e-13  Score=100.94  Aligned_cols=206  Identities=17%  Similarity=0.171  Sum_probs=141.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      ++.|++||+.-.||+.++..|.+.|.+|+++.|++        +.+..+-..  .+.-++++.+|+.+-+.+++++.   
T Consensus         7 G~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~--------a~L~sLV~e--~p~~I~Pi~~Dls~wea~~~~l~~v~   76 (245)
T KOG1207|consen    7 GVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNE--------ANLLSLVKE--TPSLIIPIVGDLSAWEALFKLLVPVF   76 (245)
T ss_pred             ceEEEeecccccccHHHHHHHHhcCCEEEEEecCH--------HHHHHHHhh--CCcceeeeEecccHHHHHHHhhcccC
Confidence            57899999999999999999999999999999998        333333221  11348999999999777777775   


Q ss_pred             CccEEEEecccCC------CCCCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCCcccCCC
Q 020104           82 GCTGVLHVATPVD------FEDKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVDMMDETF  151 (331)
Q Consensus        82 ~~d~Vih~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~  151 (331)
                      .+|.++|+||...      ....+. +..+++|+.+..++.+...+    ..-...+|.+||.+..-       ++    
T Consensus        77 pidgLVNNAgvA~~~pf~eiT~q~f-Dr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~R-------~~----  144 (245)
T KOG1207|consen   77 PIDGLVNNAGVATNHPFGEITQQSF-DRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASIR-------PL----  144 (245)
T ss_pred             chhhhhccchhhhcchHHHHhHHhh-cceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhccc-------cc----
Confidence            4799999998533      112222 37788999988888776443    22134699999976531       11    


Q ss_pred             CCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccC
Q 020104          152 WSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFL  228 (331)
Q Consensus       152 ~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (331)
                                 ...+.|..+|.+.+.+.+.++-+.   ++++..+.|..+...-....- +.....-.++  ...++.  
T Consensus       145 -----------~nHtvYcatKaALDmlTk~lAlELGp~kIRVNsVNPTVVmT~MG~dnW-SDP~K~k~mL--~riPl~--  208 (245)
T KOG1207|consen  145 -----------DNHTVYCATKAALDMLTKCLALELGPQKIRVNSVNPTVVMTDMGRDNW-SDPDKKKKML--DRIPLK--  208 (245)
T ss_pred             -----------CCceEEeecHHHHHHHHHHHHHhhCcceeEeeccCCeEEEeccccccc-CCchhccchh--hhCchh--
Confidence                       124579999999999999888776   589999999988754211100 0000000000  012222  


Q ss_pred             CCccceeHHHHHHHHHHhhcCCC
Q 020104          229 LNTSMVHVDDVARAHIFLLEYPD  251 (331)
Q Consensus       229 ~~~~~i~v~D~a~~~~~~~~~~~  251 (331)
                         .|..++.++.++.+++....
T Consensus       209 ---rFaEV~eVVnA~lfLLSd~s  228 (245)
T KOG1207|consen  209 ---RFAEVDEVVNAVLFLLSDNS  228 (245)
T ss_pred             ---hhhHHHHHHhhheeeeecCc
Confidence               78899999999999998654

>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA

Probab=99.38  E-value=6e-12  Score=132.91  Aligned_cols=174  Identities=19%  Similarity=0.198  Sum_probs=126.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHC-CCeEEEEecCCCCc---c--cC-Cc-----------------------------
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDH-GYSVTTTVRSELDP---E--HR-NS-----------------------------   47 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~---~--~~-~~-----------------------------   47 (331)
                      .++++|||||+|.||..++++|+++ |++|++++|+....   .  .. ..                             
T Consensus      1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~ 2075 (2582)
T TIGR02813      1996 SDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRP 2075 (2582)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcccc
Confidence            3568999999999999999999988 69999999983100   0  00 00                             


Q ss_pred             -----cccccccCCCCCCCcEEEEeCCCCCCccHHHHhc------CccEEEEecccCCC------CCCChhhHHHHHHHH
Q 020104           48 -----KDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA------GCTGVLHVATPVDF------EDKEPEEVITQRAIN  110 (331)
Q Consensus        48 -----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~  110 (331)
                           +....+.++......+.++.+|++|.+++.+++.      ++|.|||+||....      ...++ +..+++|+.
T Consensus      2076 ~~~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f-~~v~~~nv~ 2154 (2582)
T TIGR02813      2076 VLSSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEF-NAVYGTKVD 2154 (2582)
T ss_pred             cchhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHH-HHHHHHHHH
Confidence                 0000011111123467889999999998887774      48999999996441      12233 378999999


Q ss_pred             HHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc-CCc
Q 020104          111 GTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH-GLD  189 (331)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~-~~~  189 (331)
                      |+.++++++.... .+++|++||...+.+.                      .....|+.+|...+.+.+.++.++ +++
T Consensus      2155 G~~~Ll~al~~~~-~~~IV~~SSvag~~G~----------------------~gqs~YaaAkaaL~~la~~la~~~~~ir 2211 (2582)
T TIGR02813      2155 GLLSLLAALNAEN-IKLLALFSSAAGFYGN----------------------TGQSDYAMSNDILNKAALQLKALNPSAK 2211 (2582)
T ss_pred             HHHHHHHHHHHhC-CCeEEEEechhhcCCC----------------------CCcHHHHHHHHHHHHHHHHHHHHcCCcE
Confidence            9999999998876 6799999997655311                      113469999999988888877765 689


Q ss_pred             EEEeccCceeCC
Q 020104          190 LVTLIPSMVVGP  201 (331)
Q Consensus       190 ~~ilRp~~v~G~  201 (331)
                      ++.+.||.+-|+
T Consensus      2212 V~sI~wG~wdtg 2223 (2582)
T TIGR02813      2212 VMSFNWGPWDGG 2223 (2582)
T ss_pred             EEEEECCeecCC
Confidence            999999987664

Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.

>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.37  E-value=3e-11  Score=100.43  Aligned_cols=207  Identities=20%  Similarity=0.185  Sum_probs=140.1

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc----
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA----   81 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----   81 (331)
                      .+|+||||+..||..++..+..+|.+|.++.|+.     .+.......-++......+.+..+|+.|.+++...++    
T Consensus        34 ~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~-----~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~  108 (331)
T KOG1210|consen   34 RHILITGGSSGLGLALALECKREGADVTITARSG-----KKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRD  108 (331)
T ss_pred             ceEEEecCcchhhHHHHHHHHHccCceEEEeccH-----HHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhh
Confidence            5899999999999999999999999999999998     4444443333333333447789999999988887764    


Q ss_pred             ---CccEEEEecccCC---CCCCChh--hHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCCCCCCcccC
Q 020104           82 ---GCTGVLHVATPVD---FEDKEPE--EVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYNDKDVDMMDE  149 (331)
Q Consensus        82 ---~~d~Vih~a~~~~---~~~~~~~--~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~E  149 (331)
                         .+|.+|||||..-   +...++.  +...++|..++.+++.++...    ....+++.+||......          
T Consensus       109 ~~~~~d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~~~----------  178 (331)
T KOG1210|consen  109 LEGPIDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAMLG----------  178 (331)
T ss_pred             ccCCcceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhhcC----------
Confidence               4799999998543   2222221  367889999999998877543    11338999998665421          


Q ss_pred             CCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc-cc
Q 020104          150 TFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE-EY  225 (331)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~-~~  225 (331)
                                  ....+.|..+|.+...+.....++   +++.++..-|+.+-.|+.....           +-+|. ..
T Consensus       179 ------------i~GysaYs~sK~alrgLa~~l~qE~i~~~v~Vt~~~P~~~~tpGfE~En-----------~tkP~~t~  235 (331)
T KOG1210|consen  179 ------------IYGYSAYSPSKFALRGLAEALRQELIKYGVHVTLYYPPDTLTPGFEREN-----------KTKPEETK  235 (331)
T ss_pred             ------------cccccccccHHHHHHHHHHHHHHHHhhcceEEEEEcCCCCCCCcccccc-----------ccCchhee
Confidence                        122446888887665555554443   4789999999988888632110           11110 01


Q ss_pred             ccCCCccceeHHHHHHHHHHhhcCC
Q 020104          226 GFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       226 ~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      -..+..+.+-.+++|.+++.=+.+.
T Consensus       236 ii~g~ss~~~~e~~a~~~~~~~~rg  260 (331)
T KOG1210|consen  236 IIEGGSSVIKCEEMAKAIVKGMKRG  260 (331)
T ss_pred             eecCCCCCcCHHHHHHHHHhHHhhc
Confidence            1111136688999999998766654

>PTZ00325 malate dehydrogenase; Provisional

Probab=99.36  E-value=1.5e-11  Score=106.16  Aligned_cols=179  Identities=15%  Similarity=0.042  Sum_probs=123.7

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      .+|+||.|+|++|.||+.++..|+.++  .++.+++++.     ...+.+. +...   ..  .....+..|+.++.+.+
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~-----~~g~a~D-l~~~---~~--~~~v~~~td~~~~~~~l   74 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVG-----APGVAAD-LSHI---DT--PAKVTGYADGELWEKAL   74 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCC-----Ccccccc-hhhc---Cc--CceEEEecCCCchHHHh
Confidence            356799999999999999999998655  6899999843     1111111 1110   01  22334566666677889


Q ss_pred             cCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhh
Q 020104           81 AGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRK  160 (331)
Q Consensus        81 ~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~  160 (331)
                      +++|+||++||.......+.. +.+..|+..+.++++++++++ ++++|+++|..+.....-....+.+..         
T Consensus        75 ~gaDvVVitaG~~~~~~~tR~-dll~~N~~i~~~i~~~i~~~~-~~~iviv~SNPvdv~~~~~~~~~~~~s---------  143 (321)
T PTZ00325         75 RGADLVLICAGVPRKPGMTRD-DLFNTNAPIVRDLVAAVASSA-PKAIVGIVSNPVNSTVPIAAETLKKAG---------  143 (321)
T ss_pred             CCCCEEEECCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHhhhhhcc---------
Confidence            999999999997654334455 889999999999999999999 899999999766531100000001111         


Q ss_pred             cCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCC
Q 020104          161 LDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFIC  204 (331)
Q Consensus       161 ~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~  204 (331)
                      ..+|...||.+-+..-++-...++..+++...++ +.|+|...+
T Consensus       144 g~p~~~viG~g~LDs~R~r~~la~~l~v~~~~V~-~~VlGeHGd  186 (321)
T PTZ00325        144 VYDPRKLFGVTTLDVVRARKFVAEALGMNPYDVN-VPVVGGHSG  186 (321)
T ss_pred             CCChhheeechhHHHHHHHHHHHHHhCcChhheE-EEEEeecCC
Confidence            1245667888767777777777888888888888 778886433

>PLN00106 malate dehydrogenase

Probab=99.24  E-value=8.2e-11  Score=101.63  Aligned_cols=175  Identities=14%  Similarity=0.042  Sum_probs=120.4

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      .+||.|+|++|.+|+.++..|+.++  .++.+++++.     .....+. +...   ....  ...++.+.+++.+.+++
T Consensus        18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~-----~~g~a~D-l~~~---~~~~--~i~~~~~~~d~~~~l~~   86 (323)
T PLN00106         18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN-----TPGVAAD-VSHI---NTPA--QVRGFLGDDQLGDALKG   86 (323)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC-----CCeeEch-hhhC---CcCc--eEEEEeCCCCHHHHcCC
Confidence            3689999999999999999999765  4899998866     1111111 1100   0111  22344455568889999


Q ss_pred             ccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcC
Q 020104           83 CTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLD  162 (331)
Q Consensus        83 ~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~  162 (331)
                      +|+|||+||.......+.. +.+..|...++++.+.+++++ ...+|+++|.-+-+...--...+....         ..
T Consensus        87 aDiVVitAG~~~~~g~~R~-dll~~N~~i~~~i~~~i~~~~-p~aivivvSNPvD~~~~i~t~~~~~~s---------~~  155 (323)
T PLN00106         87 ADLVIIPAGVPRKPGMTRD-DLFNINAGIVKTLCEAVAKHC-PNALVNIISNPVNSTVPIAAEVLKKAG---------VY  155 (323)
T ss_pred             CCEEEEeCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCCccccHHHHHHHHHHcC---------CC
Confidence            9999999997654334555 899999999999999999999 788998888554210000000001111         13


Q ss_pred             CCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCC
Q 020104          163 SWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGP  201 (331)
Q Consensus       163 ~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~  201 (331)
                      +|...||.+++..+++-..++++.+++..-++-..+-++
T Consensus       156 p~~~viG~~~LDs~Rl~~~lA~~lgv~~~~V~~~ViGeH  194 (323)
T PLN00106        156 DPKKLFGVTTLDVVRANTFVAEKKGLDPADVDVPVVGGH  194 (323)
T ss_pred             CcceEEEEecchHHHHHHHHHHHhCCChhheEEEEEEeC
Confidence            456789999999999999999999998888854444444

>PRK06720 hypothetical protein; Provisional

Probab=99.14  E-value=4.9e-10  Score=88.21  Aligned_cols=83  Identities=14%  Similarity=0.092  Sum_probs=62.3

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .++.++||||+|.||..+++.|++.|++|++++|+.     ...... ..+.   .......++.+|+.+.+++.++++ 
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~-----~~~~~~~~~l~---~~~~~~~~~~~Dl~~~~~v~~~v~~   86 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQ-----ESGQATVEEIT---NLGGEALFVSYDMEKQGDWQRVISI   86 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHH---hcCCcEEEEEccCCCHHHHHHHHHH
Confidence            357899999999999999999999999999999876     221111 1111   112356788999999988877542 


Q ss_pred             ------CccEEEEecccCC
Q 020104           82 ------GCTGVLHVATPVD   94 (331)
Q Consensus        82 ------~~d~Vih~a~~~~   94 (331)
                            ++|++||+||...
T Consensus        87 ~~~~~G~iDilVnnAG~~~  105 (169)
T PRK06720         87 TLNAFSRIDMLFQNAGLYK  105 (169)
T ss_pred             HHHHcCCCCEEEECCCcCC
Confidence                  5899999998544

>PRK08309 short chain dehydrogenase; Provisional

Probab=99.13  E-value=2.1e-10  Score=90.82  Aligned_cols=104  Identities=18%  Similarity=0.229  Sum_probs=76.8

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc----
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA----   81 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----   81 (331)
                      |+++|||||||+|. +++.|++.|++|+++.|++     .....+..  .+.. ...+.++.+|+.|.+++.++++    
T Consensus         1 m~vlVtGGtG~gg~-la~~L~~~G~~V~v~~R~~-----~~~~~l~~--~l~~-~~~i~~~~~Dv~d~~sv~~~i~~~l~   71 (177)
T PRK08309          1 MHALVIGGTGMLKR-VSLWLCEKGFHVSVIARRE-----VKLENVKR--ESTT-PESITPLPLDYHDDDALKLAIKSTIE   71 (177)
T ss_pred             CEEEEECcCHHHHH-HHHHHHHCcCEEEEEECCH-----HHHHHHHH--Hhhc-CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            47999999998876 9999999999999999986     22222211  1111 2467889999999998888774    


Q ss_pred             ---CccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCcc----EEEEecccce
Q 020104           82 ---GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVK----RVVYTSSNAA  136 (331)
Q Consensus        82 ---~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~----~~v~~SS~~~  136 (331)
                         ++|.+|+.+.                 +.++.++.++|++.+ ++    +|+|+=++.+
T Consensus        72 ~~g~id~lv~~vh-----------------~~~~~~~~~~~~~~g-v~~~~~~~~h~~gs~~  115 (177)
T PRK08309         72 KNGPFDLAVAWIH-----------------SSAKDALSVVCRELD-GSSETYRLFHVLGSAA  115 (177)
T ss_pred             HcCCCeEEEEecc-----------------ccchhhHHHHHHHHc-cCCCCceEEEEeCCcC
Confidence               3577776543                 234678999999998 88    8998865443

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=99.11  E-value=7.3e-10  Score=92.43  Aligned_cols=167  Identities=17%  Similarity=0.147  Sum_probs=115.1

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccC-CCC-CCCcEEEEeCCCCCCcc----HHHH
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKN-LPG-ASERLRIFHADLSHPDG----FDAA   79 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~D~~~~~~----~~~~   79 (331)
                      .-..|||||..||++.+++|+++|++|++++|+.        +++..++. +.. ..-.+..+..|..++..    +.+.
T Consensus        50 ~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~--------~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~  121 (312)
T KOG1014|consen   50 SWAVVTGATDGIGKAYARELAKRGFNVVLISRTQ--------EKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEK  121 (312)
T ss_pred             CEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCH--------HHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHH
Confidence            4689999999999999999999999999999998        33333321 111 12357788999988765    4444


Q ss_pred             hc--CccEEEEecccCCCCCC----C---hhhHHHHHHHHHHHHHHH----HHHhcCCccEEEEecccceeecCCCCCCc
Q 020104           80 IA--GCTGVLHVATPVDFEDK----E---PEEVITQRAINGTLGILK----SCLKSGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        80 ~~--~~d~Vih~a~~~~~~~~----~---~~~~~~~~n~~~~~~l~~----~~~~~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                      ++  .+.++|||+|.....+.    .   .....+.+|+.++..+.+    .+.+.+ ..-+|++||....-       |
T Consensus       122 l~~~~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~-~G~IvnigS~ag~~-------p  193 (312)
T KOG1014|consen  122 LAGLDVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERK-KGIIVNIGSFAGLI-------P  193 (312)
T ss_pred             hcCCceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCC-CceEEEeccccccc-------c
Confidence            44  47899999997552111    1   113455677666544444    444544 56899999965431       1


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCC
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFI  203 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~  203 (331)
                                     .+--+.|+.+|...+.+...+.+++   |+.+-.+-|..|-++-.
T Consensus       194 ---------------~p~~s~ysasK~~v~~~S~~L~~Ey~~~gI~Vq~v~p~~VaTkm~  238 (312)
T KOG1014|consen  194 ---------------TPLLSVYSASKAFVDFFSRCLQKEYESKGIFVQSVIPYLVATKMA  238 (312)
T ss_pred             ---------------ChhHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEEeehhheecccc
Confidence                           1113479999998888888777665   78888999999987643

>KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.08  E-value=3.6e-10  Score=85.45  Aligned_cols=208  Identities=21%  Similarity=0.265  Sum_probs=136.0

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc----
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA----   81 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----   81 (331)
                      -..+||||...+|...++.|.++|..|.+++...     ++.+...  +++   ..++.+...|++..++++.++.    
T Consensus        10 lvalvtggasglg~ataerlakqgasv~lldlp~-----skg~~va--kel---g~~~vf~padvtsekdv~aala~ak~   79 (260)
T KOG1199|consen   10 LVALVTGGASGLGKATAERLAKQGASVALLDLPQ-----SKGADVA--KEL---GGKVVFTPADVTSEKDVRAALAKAKA   79 (260)
T ss_pred             eeEEeecCcccccHHHHHHHHhcCceEEEEeCCc-----ccchHHH--HHh---CCceEEeccccCcHHHHHHHHHHHHh
Confidence            3579999999999999999999999999998876     2322221  122   2578899999999999998875    


Q ss_pred             ---CccEEEEecccCC----C--------CCCChhhHHHHHHHHHHHHHHHHHHh---------cCCccEEEEeccccee
Q 020104           82 ---GCTGVLHVATPVD----F--------EDKEPEEVITQRAINGTLGILKSCLK---------SGTVKRVVYTSSNAAV  137 (331)
Q Consensus        82 ---~~d~Vih~a~~~~----~--------~~~~~~~~~~~~n~~~~~~l~~~~~~---------~~~~~~~v~~SS~~~~  137 (331)
                         ..|..+|||+...    +        ..++.. ..+++|+.|+.|+++....         .++-.-+|.+.|...|
T Consensus        80 kfgrld~~vncagia~a~ktyn~~k~~~h~ledfq-rvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaaf  158 (260)
T KOG1199|consen   80 KFGRLDALVNCAGIAYAFKTYNVQKKKHHDLEDFQ-RVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAF  158 (260)
T ss_pred             hccceeeeeeccceeeeeeeeeecccccccHHHhh-heeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeee
Confidence               4799999998432    1        111232 5677999999999886542         1222346666666655


Q ss_pred             ecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHH
Q 020104          138 FYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSS  214 (331)
Q Consensus       138 ~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~  214 (331)
                      .+.                      .....|+.||...--+..-.++.   .|++++.+-||.+-.|-.. .++.-+..+
T Consensus       159 dgq----------------------~gqaaysaskgaivgmtlpiardla~~gir~~tiapglf~tplls-slpekv~~f  215 (260)
T KOG1199|consen  159 DGQ----------------------TGQAAYSASKGAIVGMTLPIARDLAGDGIRFNTIAPGLFDTPLLS-SLPEKVKSF  215 (260)
T ss_pred             cCc----------------------cchhhhhcccCceEeeechhhhhcccCceEEEeecccccCChhhh-hhhHHHHHH
Confidence            211                      11346999997544444333332   3799999999876555321 223333333


Q ss_pred             HHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCCCCce
Q 020104          215 LALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDAKGR  255 (331)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~  255 (331)
                      +....    +++.    ..-|..+.+..+-.+++++..+|-
T Consensus       216 la~~i----pfps----rlg~p~eyahlvqaiienp~lnge  248 (260)
T KOG1199|consen  216 LAQLI----PFPS----RLGHPHEYAHLVQAIIENPYLNGE  248 (260)
T ss_pred             HHHhC----CCch----hcCChHHHHHHHHHHHhCcccCCe
Confidence            33222    2221    445777888888889999887664

>KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.07  E-value=2.2e-09  Score=85.18  Aligned_cols=211  Identities=16%  Similarity=0.100  Sum_probs=126.7

Q ss_pred             CCCC-CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH
Q 020104            1 MEEG-KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         1 M~~~-~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      |... .+.|||||++..||..++..+.+.+.++....+...     ..+ .+.+....  ........+|+.....+.++
T Consensus         1 m~~~~r~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~-----~a~-~~~L~v~~--gd~~v~~~g~~~e~~~l~al   72 (253)
T KOG1204|consen    1 MDLNMRKVILLTGASRGIGTGSVATILAEDDEALRYGVARL-----LAE-LEGLKVAY--GDDFVHVVGDITEEQLLGAL   72 (253)
T ss_pred             CCcccceEEEEecCCCCccHHHHHHHHhcchHHHHHhhhcc-----ccc-ccceEEEe--cCCcceechHHHHHHHHHHH
Confidence            5443 456899999999999999999988766544444331     111 11111100  01222334444443323333


Q ss_pred             h---c----CccEEEEecccCCC--------CCCChhhHHHHHHHHHHHHHHHHHHhc--C--CccEEEEecccceeecC
Q 020104           80 I---A----GCTGVLHVATPVDF--------EDKEPEEVITQRAINGTLGILKSCLKS--G--TVKRVVYTSSNAAVFYN  140 (331)
Q Consensus        80 ~---~----~~d~Vih~a~~~~~--------~~~~~~~~~~~~n~~~~~~l~~~~~~~--~--~~~~~v~~SS~~~~~~~  140 (331)
                      .   +    +-|.|||+||....        ...+....+++.|+.+...|...+...  +  ..+-+|++||.+..-  
T Consensus        73 ~e~~r~k~gkr~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav~--  150 (253)
T KOG1204|consen   73 REAPRKKGGKRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAVR--  150 (253)
T ss_pred             HhhhhhcCCceeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhhc--
Confidence            2   2    47999999986541        111222489999999988887766543  1  136799999977652  


Q ss_pred             CCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc--CCcEEEeccCceeCCCCC-----CCCCccHHH
Q 020104          141 DKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH--GLDLVTLIPSMVVGPFIC-----PKFAGSVRS  213 (331)
Q Consensus       141 ~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~--~~~~~ilRp~~v~G~~~~-----~~~~~~~~~  213 (331)
                           |+               +.-..|+.+|.+-+.+.+.++.+-  ++++..++||.+-.+-.-     ..+......
T Consensus       151 -----p~---------------~~wa~yc~~KaAr~m~f~~lA~EEp~~v~vl~~aPGvvDT~mq~~ir~~~~~~p~~l~  210 (253)
T KOG1204|consen  151 -----PF---------------SSWAAYCSSKAARNMYFMVLASEEPFDVRVLNYAPGVVDTQMQVCIRETSRMTPADLK  210 (253)
T ss_pred             -----cc---------------cHHHHhhhhHHHHHHHHHHHhhcCccceeEEEccCCcccchhHHHHhhccCCCHHHHH
Confidence                 11               112269999999999999887553  789999999988654210     111111111


Q ss_pred             HHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          214 SLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      ....++..         ...+...+.++.+..++++.
T Consensus       211 ~f~el~~~---------~~ll~~~~~a~~l~~L~e~~  238 (253)
T KOG1204|consen  211 MFKELKES---------GQLLDPQVTAKVLAKLLEKG  238 (253)
T ss_pred             HHHHHHhc---------CCcCChhhHHHHHHHHHHhc
Confidence            11111211         15677788899998888876

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=98.97  E-value=1.1e-08  Score=89.17  Aligned_cols=174  Identities=14%  Similarity=0.022  Sum_probs=105.6

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCC-------CeEEEEecCCCCcccCCccccccc-cCCCCCCCcEEEEeCCCCCCccHH
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHG-------YSVTTTVRSELDPEHRNSKDLSFL-KNLPGASERLRIFHADLSHPDGFD   77 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~~~~~~~   77 (331)
                      .||+||||+|++|++++..|+..+       .+|++++++..      .+.+... .++.   ....+...|+....++.
T Consensus         3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~------~~~~~g~~~Dl~---d~~~~~~~~~~~~~~~~   73 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPA------LKALEGVVMELQ---DCAFPLLKSVVATTDPE   73 (325)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCc------cccccceeeehh---hccccccCCceecCCHH
Confidence            489999999999999999998854       58999999651      1111100 0000   00112233555556778


Q ss_pred             HHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCCCCcccCCCCCChh
Q 020104           78 AAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVD  156 (331)
Q Consensus        78 ~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~  156 (331)
                      +.++++|+|||+|+.......+.. +.++.|+.-.+.+.+.++++. .-..+|.+|...-.     ....+.+..+    
T Consensus        74 ~~l~~aDiVI~tAG~~~~~~~~R~-~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~-----~t~~~~k~~~----  143 (325)
T cd01336          74 EAFKDVDVAILVGAMPRKEGMERK-DLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANT-----NALILLKYAP----  143 (325)
T ss_pred             HHhCCCCEEEEeCCcCCCCCCCHH-HHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHH-----HHHHHHHHcC----
Confidence            889999999999998664444555 899999999999999998884 23355555541100     0001111110    


Q ss_pred             hhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCC
Q 020104          157 YIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPF  202 (331)
Q Consensus       157 ~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~  202 (331)
                          ..++...=..+.+..-++-..+++..+++...++-..|+|..
T Consensus       144 ----~~~~~~ig~gt~LDs~R~r~~la~~l~v~~~~v~~~~V~GeH  185 (325)
T cd01336         144 ----SIPKENFTALTRLDHNRAKSQIALKLGVPVSDVKNVIIWGNH  185 (325)
T ss_pred             ----CCCHHHEEeeehHHHHHHHHHHHHHhCcChhhceEeEEEEcC
Confidence                011111122234455555556666678887777777787864

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.94  E-value=3.3e-09  Score=92.87  Aligned_cols=98  Identities=30%  Similarity=0.391  Sum_probs=78.4

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      ||+|||+|+ |++|+.++..|++++ ++|++.+|+.     ++..++....     .++++..++|+.|.+.+.+++++.
T Consensus         1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~-----~~~~~i~~~~-----~~~v~~~~vD~~d~~al~~li~~~   69 (389)
T COG1748           1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSK-----EKCARIAELI-----GGKVEALQVDAADVDALVALIKDF   69 (389)
T ss_pred             CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCH-----HHHHHHHhhc-----cccceeEEecccChHHHHHHHhcC
Confidence            479999997 999999999999998 9999999998     3444443221     147999999999999999999999


Q ss_pred             cEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Q 020104           84 TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTS  132 (331)
Q Consensus        84 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  132 (331)
                      |+|||++.+..                 ...++++|.+.+ + ++|=+|
T Consensus        70 d~VIn~~p~~~-----------------~~~i~ka~i~~g-v-~yvDts   99 (389)
T COG1748          70 DLVINAAPPFV-----------------DLTILKACIKTG-V-DYVDTS   99 (389)
T ss_pred             CEEEEeCCchh-----------------hHHHHHHHHHhC-C-CEEEcc
Confidence            99999987521                 236888888888 4 555444

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=98.86  E-value=8.5e-08  Score=83.32  Aligned_cols=176  Identities=14%  Similarity=0.032  Sum_probs=115.5

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC-------eEEEEecCCCCcccCCccccccccCCC-CCCCcEEEEeCCCCCCccH
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY-------SVTTTVRSELDPEHRNSKDLSFLKNLP-GASERLRIFHADLSHPDGF   76 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~   76 (331)
                      .+||.|+|++|.+|+.++..|+..|.       ++.+++++....  ........+.... ....++++.       ...
T Consensus         2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~--~a~g~a~Dl~~~~~~~~~~~~i~-------~~~   72 (322)
T cd01338           2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALK--ALEGVAMELEDCAFPLLAEIVIT-------DDP   72 (322)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCccc--ccceeehhhhhccccccCceEEe-------cCc
Confidence            35899999999999999999998763       788888854100  0001111111110 001122221       123


Q ss_pred             HHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCC-ccEEEEecccceeecCCCCCCcccCCCCCCh
Q 020104           77 DAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGT-VKRVVYTSSNAAVFYNDKDVDMMDETFWSDV  155 (331)
Q Consensus        77 ~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~  155 (331)
                      .+.++++|+||.+|+.......+.. +.++.|+.-.+.+.+.+++++. -..+|.+|...-..    ........     
T Consensus        73 ~~~~~daDivvitaG~~~k~g~tR~-dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~----t~~~~k~s-----  142 (322)
T cd01338          73 NVAFKDADWALLVGAKPRGPGMERA-DLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTN----ALIAMKNA-----  142 (322)
T ss_pred             HHHhCCCCEEEEeCCCCCCCCCcHH-HHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHH----HHHHHHHc-----
Confidence            4678899999999997654434555 8899999999999999999872 44666665311000    00000111     


Q ss_pred             hhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCC
Q 020104          156 DYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFI  203 (331)
Q Consensus       156 ~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~  203 (331)
                          +-.++...||.+++..+++...+++..+++...+|...|||+..
T Consensus       143 ----g~~p~~~ViG~t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG  186 (322)
T cd01338         143 ----PDIPPDNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHS  186 (322)
T ss_pred             ----CCCChHheEEehHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCc
Confidence                00234668999999999999999999999999999999999863

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism]

Probab=98.85  E-value=2.1e-08  Score=80.88  Aligned_cols=181  Identities=15%  Similarity=0.134  Sum_probs=117.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCC-----eEEEEecCCCCcccCCccccccccCC-CCCCCcEEEEeCCCCCCccHH
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGY-----SVTTTVRSELDPEHRNSKDLSFLKNL-PGASERLRIFHADLSHPDGFD   77 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-----~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~~~~~~~   77 (331)
                      |.|.+||||++..||-++|.+|++..-     .+.+.+|+.+    ...+....+++. +...-.++++.+|+.+..++.
T Consensus         2 ~RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~----kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~   77 (341)
T KOG1478|consen    2 MRKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMS----KAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVF   77 (341)
T ss_pred             CceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChh----HHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHH
Confidence            456789999999999999999998643     3566778873    222223444432 323346789999999998777


Q ss_pred             HHh-------cCccEEEEecccCCCC--------------------------------CCChhhHHHHHHHHHHHHHHHH
Q 020104           78 AAI-------AGCTGVLHVATPVDFE--------------------------------DKEPEEVITQRAINGTLGILKS  118 (331)
Q Consensus        78 ~~~-------~~~d~Vih~a~~~~~~--------------------------------~~~~~~~~~~~n~~~~~~l~~~  118 (331)
                      .+.       ...|.|+-+||.....                                ..|..-++++.||-|...+.+.
T Consensus        78 ~A~~di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~  157 (341)
T KOG1478|consen   78 RASKDIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRE  157 (341)
T ss_pred             HHHHHHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhh
Confidence            664       3689999999854421                                1233347889999998877776


Q ss_pred             HHhc---CCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEE
Q 020104          119 CLKS---GTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVT  192 (331)
Q Consensus       119 ~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~i  192 (331)
                      ....   +....+|.+||...-      ...++-+|+.       ......+|..||.+.+-+-....+..   |+...+
T Consensus       158 l~pll~~~~~~~lvwtSS~~a~------kk~lsleD~q-------~~kg~~pY~sSKrl~DlLh~A~~~~~~~~g~~qyv  224 (341)
T KOG1478|consen  158 LEPLLCHSDNPQLVWTSSRMAR------KKNLSLEDFQ-------HSKGKEPYSSSKRLTDLLHVALNRNFKPLGINQYV  224 (341)
T ss_pred             hhhHhhcCCCCeEEEEeecccc------cccCCHHHHh-------hhcCCCCcchhHHHHHHHHHHHhccccccchhhhc
Confidence            5532   213489999995432      2223322221       12234579999999987766654432   566667


Q ss_pred             eccCceeCC
Q 020104          193 LIPSMVVGP  201 (331)
Q Consensus       193 lRp~~v~G~  201 (331)
                      +.||.....
T Consensus       225 v~pg~~tt~  233 (341)
T KOG1478|consen  225 VQPGIFTTN  233 (341)
T ss_pred             ccCceeecc
Confidence            777766544

>PRK09620 hypothetical protein; Provisional

Probab=98.77  E-value=1.8e-08  Score=82.97  Aligned_cols=83  Identities=19%  Similarity=0.221  Sum_probs=56.8

Q ss_pred             CCceEEEecCc----------------chhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEe
Q 020104            4 GKGRVCVTGGT----------------GFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH   67 (331)
Q Consensus         4 ~~~~ilVtGat----------------G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (331)
                      .+|+||||+|.                ||+|++|+++|+++|++|+++.+...    ......      + ....+..+.
T Consensus         2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~----~~~~~~------~-~~~~~~~V~   70 (229)
T PRK09620          2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFA----EKPNDI------N-NQLELHPFE   70 (229)
T ss_pred             CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCc----CCCccc------C-CceeEEEEe
Confidence            36799999886                99999999999999999998876431    000000      0 012334456


Q ss_pred             CCCCCCccHHHHhc--CccEEEEecccCCCCC
Q 020104           68 ADLSHPDGFDAAIA--GCTGVLHVATPVDFED   97 (331)
Q Consensus        68 ~D~~~~~~~~~~~~--~~d~Vih~a~~~~~~~   97 (331)
                      +|....+.+.+++.  ++|+|||+||..++..
T Consensus        71 s~~d~~~~l~~~~~~~~~D~VIH~AAvsD~~~  102 (229)
T PRK09620         71 GIIDLQDKMKSIITHEKVDAVIMAAAGSDWVV  102 (229)
T ss_pred             cHHHHHHHHHHHhcccCCCEEEECccccceec
Confidence            63333356777774  6899999999877553

>PRK05086 malate dehydrogenase; Provisional

Probab=98.73  E-value=2.6e-07  Score=80.16  Aligned_cols=170  Identities=14%  Similarity=0.042  Sum_probs=105.5

Q ss_pred             ceEEEecCcchhHHHHHHHHHH-C--CCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLD-H--GYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~-~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      |||+|+||||.+|++++..|.. .  ++++.+++|++.     .......+..   . +....+.+  .+.+++.+.+++
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-----~~g~alDl~~---~-~~~~~i~~--~~~~d~~~~l~~   69 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-----TPGVAVDLSH---I-PTAVKIKG--FSGEDPTPALEG   69 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-----Ccceehhhhc---C-CCCceEEE--eCCCCHHHHcCC
Confidence            5899999999999999998855 3  468888888751     1110001111   0 11122333  234456677889


Q ss_pred             ccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccce----eecCCCCCCcccCCCCCChhhh
Q 020104           83 CTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAA----VFYNDKDVDMMDETFWSDVDYI  158 (331)
Q Consensus        83 ~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~----~~~~~~~~~~~~E~~~~~~~~~  158 (331)
                      +|+||.++|.......+.. +.+..|......+++++++++ .+++|.+.|-=+    +...   ........       
T Consensus        70 ~DiVIitaG~~~~~~~~R~-dll~~N~~i~~~ii~~i~~~~-~~~ivivvsNP~D~~t~~~~---~~~~~~sg-------  137 (312)
T PRK05086         70 ADVVLISAGVARKPGMDRS-DLFNVNAGIVKNLVEKVAKTC-PKACIGIITNPVNTTVAIAA---EVLKKAGV-------  137 (312)
T ss_pred             CCEEEEcCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCchHHHHHHHH---HHHHHhcC-------
Confidence            9999999997654434455 889999999999999999998 788888777333    1000   00000000       


Q ss_pred             hhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCC
Q 020104          159 RKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPF  202 (331)
Q Consensus       159 ~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~  202 (331)
                         .++....|..-+..-++....++..+++..-++ +.++|..
T Consensus       138 ---~p~~rvig~~~Lds~R~~~~ia~~l~~~~~~v~-~~v~GeH  177 (312)
T PRK05086        138 ---YDKNKLFGVTTLDVIRSETFVAELKGKQPGEVE-VPVIGGH  177 (312)
T ss_pred             ---CCHHHEEeeecHHHHHHHHHHHHHhCCChhheE-EEEEEec
Confidence               011223444434445555566666788777777 7778765

>COG0623 FabI Enoyl-[acyl-carrier-protein]

Probab=98.69  E-value=1.3e-06  Score=69.87  Aligned_cols=217  Identities=14%  Similarity=0.118  Sum_probs=126.5

Q ss_pred             CCceEEEecC--cchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGG--TGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      .+|++||+|-  .--|+..+++.|.++|.++..+-.++     ....+.+   ++......--+++||+.+.+++.++++
T Consensus         5 ~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e-----~l~krv~---~la~~~~s~~v~~cDV~~d~~i~~~f~   76 (259)
T COG0623           5 EGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGE-----RLEKRVE---ELAEELGSDLVLPCDVTNDESIDALFA   76 (259)
T ss_pred             CCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccH-----HHHHHHH---HHHhhccCCeEEecCCCCHHHHHHHHH
Confidence            4789999997  45799999999999999998887665     2222222   222222234568999999988888775


Q ss_pred             -------CccEEEEecccCCCC----------CCChhhHHHHHHHHHHHHHHHHHHhc-CCccEEEEecccceeecCCCC
Q 020104           82 -------GCTGVLHVATPVDFE----------DKEPEEVITQRAINGTLGILKSCLKS-GTVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        82 -------~~d~Vih~a~~~~~~----------~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~  143 (331)
                             +.|.++|+.+..+..          .++.. ...++-.-+...++++++.. ..-..+|-++    |.+....
T Consensus        77 ~i~~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~-~a~~IS~YS~~~lak~a~~lM~~ggSiltLt----Ylgs~r~  151 (259)
T COG0623          77 TIKKKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFL-IAMDISAYSFTALAKAARPLMNNGGSILTLT----YLGSERV  151 (259)
T ss_pred             HHHHhhCcccEEEEEeccCChHHhCCcccccCHHHHH-hHhhhhHhhHHHHHHHHHHhcCCCCcEEEEE----eccceee
Confidence                   589999999865511          11111 23333344455555555543 1112334222    2211000


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhC
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILG  220 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~  220 (331)
                                        .|..|..|..|.+.|.-++.++.+.   ++|++.+-.|.|-.-...+  -..+..++.... 
T Consensus       152 ------------------vPnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaISAGPIrTLAasg--I~~f~~~l~~~e-  210 (259)
T COG0623         152 ------------------VPNYNVMGVAKAALEASVRYLAADLGKEGIRVNAISAGPIRTLAASG--IGDFRKMLKENE-  210 (259)
T ss_pred             ------------------cCCCchhHHHHHHHHHHHHHHHHHhCccCeEEeeecccchHHHHhhc--cccHHHHHHHHH-
Confidence                              1235679999999999999888765   5777776665442211000  111222222111 


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEe
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICS  259 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~  259 (331)
                      ..-++     +.-+.++||.....+++..-.   .|++.++.
T Consensus       211 ~~aPl-----~r~vt~eeVG~tA~fLlSdLssgiTGei~yVD  247 (259)
T COG0623         211 ANAPL-----RRNVTIEEVGNTAAFLLSDLSSGITGEIIYVD  247 (259)
T ss_pred             hhCCc-----cCCCCHHHhhhhHHHHhcchhcccccceEEEc
Confidence            11122     255679999999998887543   34555553

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=98.68  E-value=6.8e-07  Score=78.25  Aligned_cols=86  Identities=16%  Similarity=0.114  Sum_probs=59.2

Q ss_pred             CCceEEEecCcchhHHH--HHHHHHHCCCeEEEEecCCCCcccC-------Cccccc-cccCCCCCCCcEEEEeCCCCCC
Q 020104            4 GKGRVCVTGGTGFIASW--LIMRLLDHGYSVTTTVRSELDPEHR-------NSKDLS-FLKNLPGASERLRIFHADLSHP   73 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~--l~~~L~~~g~~V~~~~r~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~D~~~~   73 (331)
                      .+|++|||||++.+|.+  +++.| +.|.+|+++.+..+.....       ..+.+. .+.+   ....+..+.+|+.+.
T Consensus        40 ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~---~G~~a~~i~~DVss~  115 (398)
T PRK13656         40 GPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKA---AGLYAKSINGDAFSD  115 (398)
T ss_pred             CCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHh---cCCceEEEEcCCCCH
Confidence            45899999999999999  89999 9999998888543100000       000111 1111   113456789999999


Q ss_pred             ccHHHHhc-------CccEEEEecccC
Q 020104           74 DGFDAAIA-------GCTGVLHVATPV   93 (331)
Q Consensus        74 ~~~~~~~~-------~~d~Vih~a~~~   93 (331)
                      +++.++++       ++|++||++|..
T Consensus       116 E~v~~lie~I~e~~G~IDiLVnSaA~~  142 (398)
T PRK13656        116 EIKQKVIELIKQDLGQVDLVVYSLASP  142 (398)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEECCccC
Confidence            88777654       589999999865

>cd00704 MDH Malate dehydrogenase

Probab=98.64  E-value=5.7e-07  Score=78.26  Aligned_cols=173  Identities=11%  Similarity=0.010  Sum_probs=100.8

Q ss_pred             eEEEecCcchhHHHHHHHHHHCC-------CeEEEEecCCCCcccCCccccccccCCC-CCCCcEEEEeCCCCCCccHHH
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHG-------YSVTTTVRSELDPEHRNSKDLSFLKNLP-GASERLRIFHADLSHPDGFDA   78 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~   78 (331)
                      ||.|+||+|.+|+.++..|+..+       +++.+++++.. .. ........+.... ......     .+.  ....+
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~-~~-~~~g~~~Dl~d~~~~~~~~~-----~i~--~~~~~   72 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPA-MK-ALEGVVMELQDCAFPLLKGV-----VIT--TDPEE   72 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCc-cC-ccceeeeehhhhcccccCCc-----EEe--cChHH
Confidence            79999999999999999998765       25888888751 00 0000000010000 000111     111  34567


Q ss_pred             HhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhc-CCccEEEEecccceeecCCCCCCcccCCCCCChhh
Q 020104           79 AIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKS-GTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDY  157 (331)
Q Consensus        79 ~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~  157 (331)
                      .++++|+|||+||.......+.. +.+..|..-.+.+...+++. +.-..+|.+|-..-..    .........      
T Consensus        73 ~~~~aDiVVitAG~~~~~g~tR~-dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~----t~~~~k~sg------  141 (323)
T cd00704          73 AFKDVDVAILVGAFPRKPGMERA-DLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTN----ALIALKNAP------  141 (323)
T ss_pred             HhCCCCEEEEeCCCCCCcCCcHH-HHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHH----HHHHHHHcC------
Confidence            88999999999997654444555 89999999999999999988 3344566555311000    000000000      


Q ss_pred             hhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCC
Q 020104          158 IRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPF  202 (331)
Q Consensus       158 ~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~  202 (331)
                         .-++....+.+.+..-++-...++..+++..-+.-..|+|..
T Consensus       142 ---~~p~~~vig~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeH  183 (323)
T cd00704         142 ---NLPPKNFTALTRLDHNRAKAQVARKLGVRVSDVKNVIIWGNH  183 (323)
T ss_pred             ---CCCHHHEEEeeHHHHHHHHHHHHHHhCcCHHHceeeeEEecc
Confidence               002223345566666666666666667766666555677764

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=98.64  E-value=2.1e-07  Score=77.91  Aligned_cols=92  Identities=15%  Similarity=0.201  Sum_probs=69.1

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--Cc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--GC   83 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~   83 (331)
                      |+|||+||||. |+.|++.|.+.|++|++..|+.     .....+..        .+...+..+..|.+++.+.+.  ++
T Consensus         1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~-----~~~~~~~~--------~g~~~v~~g~l~~~~l~~~l~~~~i   66 (256)
T TIGR00715         1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTS-----EGKHLYPI--------HQALTVHTGALDPQELREFLKRHSI   66 (256)
T ss_pred             CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccC-----Cccccccc--------cCCceEEECCCCHHHHHHHHHhcCC
Confidence            48999999999 9999999999999999999987     22222111        123455566677788888885  59


Q ss_pred             cEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCcc
Q 020104           84 TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVK  126 (331)
Q Consensus        84 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~  126 (331)
                      |+||+++.++.              ...+.++.++|++.+ ++
T Consensus        67 ~~VIDAtHPfA--------------~~is~~a~~a~~~~~-ip   94 (256)
T TIGR00715        67 DILVDATHPFA--------------AQITTNATAVCKELG-IP   94 (256)
T ss_pred             CEEEEcCCHHH--------------HHHHHHHHHHHHHhC-Cc
Confidence            99999876532              234678999999998 64

This enzyme was found to be a monomer by gel filtration.

>PRK06732 phosphopantothenate--cysteine ligase; Validated

Probab=98.62  E-value=1.2e-07  Score=78.47  Aligned_cols=69  Identities=14%  Similarity=0.208  Sum_probs=47.9

Q ss_pred             CcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCC--CccHHHHhcCccEEEEec
Q 020104           13 GTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSH--PDGFDAAIAGCTGVLHVA   90 (331)
Q Consensus        13 atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~d~Vih~a   90 (331)
                      +|||+|++|+++|+++|++|+++.|+..     ...         ....+++++.++..+  .+.+.+.+.++|+|||+|
T Consensus        24 SSG~iG~aLA~~L~~~G~~V~li~r~~~-----~~~---------~~~~~v~~i~v~s~~~m~~~l~~~~~~~DivIh~A   89 (229)
T PRK06732         24 STGQLGKIIAETFLAAGHEVTLVTTKTA-----VKP---------EPHPNLSIIEIENVDDLLETLEPLVKDHDVLIHSM   89 (229)
T ss_pred             cchHHHHHHHHHHHhCCCEEEEEECccc-----ccC---------CCCCCeEEEEEecHHHHHHHHHHHhcCCCEEEeCC
Confidence            4899999999999999999999987641     100         001355666543322  234555667899999999


Q ss_pred             ccCCC
Q 020104           91 TPVDF   95 (331)
Q Consensus        91 ~~~~~   95 (331)
                      |..++
T Consensus        90 Avsd~   94 (229)
T PRK06732         90 AVSDY   94 (229)
T ss_pred             ccCCc
Confidence            97653

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=98.56  E-value=1.2e-06  Score=76.31  Aligned_cols=164  Identities=15%  Similarity=0.022  Sum_probs=101.0

Q ss_pred             eEEEecCcchhHHHHHHHHHHCC-------CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCc-----
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHG-------YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPD-----   74 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----   74 (331)
                      +|.|+|++|.+|++++..|...+       ++++++++++.     ..              ..+-...|+.|..     
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~-----~~--------------~a~g~~~Dl~d~~~~~~~   61 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPA-----MK--------------VLEGVVMELMDCAFPLLD   61 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCc-----cc--------------ccceeEeehhcccchhcC
Confidence            58999999999999999998754       26889988652     10              0111122222221     


Q ss_pred             ------cHHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhc-CCccEEEEecccceeecCCCCCCcc
Q 020104           75 ------GFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKS-GTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        75 ------~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                            ...+.++++|+|||+||.......+.. +.+..|+.-.+.+.+.++++ +.-..+|.+|...-..     -..+
T Consensus        62 ~~~~~~~~~~~~~~aDiVVitAG~~~~~~~tr~-~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~-----t~v~  135 (324)
T TIGR01758        62 GVVPTHDPAVAFTDVDVAILVGAFPRKEGMERR-DLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTN-----ALVL  135 (324)
T ss_pred             ceeccCChHHHhCCCCEEEEcCCCCCCCCCcHH-HHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHH-----HHHH
Confidence                  446778899999999997654333455 89999999999999999998 3334666555311000     0000


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCC
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFI  203 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~  203 (331)
                      .+..        ...++...=..+.+..-++-...+++.+++..-++-..|+|...
T Consensus       136 ~~~s--------g~~~~~vig~gt~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG  183 (324)
T TIGR01758       136 SNYA--------PSIPPKNFSALTRLDHNRALAQVAERAGVPVSDVKNVIIWGNHS  183 (324)
T ss_pred             HHHc--------CCCCcceEEEeeehHHHHHHHHHHHHhCCChhhceEeEEEECCC
Confidence            0000        00111222223445555566666677788888777778888643

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=98.51  E-value=4.9e-07  Score=81.49  Aligned_cols=96  Identities=26%  Similarity=0.474  Sum_probs=68.7

Q ss_pred             EEEecCcchhHHHHHHHHHHCC-C-eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCccE
Q 020104            8 VCVTGGTGFIASWLIMRLLDHG-Y-SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTG   85 (331)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g-~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~   85 (331)
                      |+|.|| |++|+.+++.|++.+ + +|.+.+|+.     ++.+.+..  +.  ...+++.+++|+.|.+++.+++++.|+
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~-----~~~~~~~~--~~--~~~~~~~~~~d~~~~~~l~~~~~~~dv   70 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNP-----EKAERLAE--KL--LGDRVEAVQVDVNDPESLAELLRGCDV   70 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSH-----HHHHHHHT------TTTTEEEEE--TTTHHHHHHHHTTSSE
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCH-----HHHHHHHh--hc--cccceeEEEEecCCHHHHHHHHhcCCE
Confidence            799999 999999999999886 4 899999998     22222211  00  236899999999999999999999999


Q ss_pred             EEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Q 020104           86 VLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTS  132 (331)
Q Consensus        86 Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  132 (331)
                      ||||+++..                 ...++++|.+.+ + ++|-.|
T Consensus        71 Vin~~gp~~-----------------~~~v~~~~i~~g-~-~yvD~~   98 (386)
T PF03435_consen   71 VINCAGPFF-----------------GEPVARACIEAG-V-HYVDTS   98 (386)
T ss_dssp             EEE-SSGGG-----------------HHHHHHHHHHHT---EEEESS
T ss_pred             EEECCccch-----------------hHHHHHHHHHhC-C-Ceeccc
Confidence            999998641                 235788888887 3 666633

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=98.46  E-value=2.9e-07  Score=74.61  Aligned_cols=79  Identities=20%  Similarity=0.158  Sum_probs=59.3

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccccc-ccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSF-LKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      ..++++|+||+|.+|+.+++.|++.|++|++++|+.     ++.+.+.. +.+    ..+.+...+|..+.+++.+.+.+
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~-----~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~   97 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDL-----ERAQKAADSLRA----RFGEGVGAVETSDDAARAAAIKG   97 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH-----HHHHHHHHHHHh----hcCCcEEEeeCCCHHHHHHHHhc
Confidence            457899999999999999999999999999999986     22222111 111    01345556788888888889999


Q ss_pred             ccEEEEecc
Q 020104           83 CTGVLHVAT   91 (331)
Q Consensus        83 ~d~Vih~a~   91 (331)
                      +|+||++.+
T Consensus        98 ~diVi~at~  106 (194)
T cd01078          98 ADVVFAAGA  106 (194)
T ss_pred             CCEEEECCC
Confidence            999998765

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=98.30  E-value=3.9e-06  Score=63.97  Aligned_cols=115  Identities=17%  Similarity=0.087  Sum_probs=75.9

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCccccccccCCCCCC-CcEEEEeCCCCCCccHHHHhcC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKDLSFLKNLPGAS-ERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      |||.|+|++|.+|++++..|...+  .++.+++++..    ........+....... ........|       .+.+++
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~----~~~g~a~Dl~~~~~~~~~~~~i~~~~-------~~~~~~   69 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINED----KAEGEALDLSHASAPLPSPVRITSGD-------YEALKD   69 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHH----HHHHHHHHHHHHHHGSTEEEEEEESS-------GGGGTT
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcc----cceeeehhhhhhhhhccccccccccc-------cccccc
Confidence            589999999999999999999886  58999999851    0111111111111111 122222222       235678


Q ss_pred             ccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Q 020104           83 CTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTS  132 (331)
Q Consensus        83 ~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  132 (331)
                      +|+||-+|+.......+.. +.++.|..-.+.+.+.+++.+.-..++.+|
T Consensus        70 aDivvitag~~~~~g~sR~-~ll~~N~~i~~~~~~~i~~~~p~~~vivvt  118 (141)
T PF00056_consen   70 ADIVVITAGVPRKPGMSRL-DLLEANAKIVKEIAKKIAKYAPDAIVIVVT  118 (141)
T ss_dssp             ESEEEETTSTSSSTTSSHH-HHHHHHHHHHHHHHHHHHHHSTTSEEEE-S
T ss_pred             ccEEEEeccccccccccHH-HHHHHhHhHHHHHHHHHHHhCCccEEEEeC
Confidence            9999999987654334454 889999999999999999987334555544

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=98.26  E-value=2.7e-06  Score=75.99  Aligned_cols=75  Identities=19%  Similarity=0.184  Sum_probs=57.6

Q ss_pred             CCceEEEecC----------------cchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEe
Q 020104            4 GKGRVCVTGG----------------TGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH   67 (331)
Q Consensus         4 ~~~~ilVtGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (331)
                      .+++||||||                +|.+|.+++++|.++|++|+++.++..     .    .    .+   .++  ..
T Consensus       187 ~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~-----~----~----~~---~~~--~~  248 (399)
T PRK05579        187 AGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVN-----L----P----TP---AGV--KR  248 (399)
T ss_pred             CCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCcc-----c----c----CC---CCc--EE
Confidence            3579999999                999999999999999999999987651     0    0    00   122  35


Q ss_pred             CCCCCCccHHHHh----cCccEEEEecccCCCC
Q 020104           68 ADLSHPDGFDAAI----AGCTGVLHVATPVDFE   96 (331)
Q Consensus        68 ~D~~~~~~~~~~~----~~~d~Vih~a~~~~~~   96 (331)
                      .|+.+.+++.+.+    .++|++||+||..++.
T Consensus       249 ~dv~~~~~~~~~v~~~~~~~DilI~~Aav~d~~  281 (399)
T PRK05579        249 IDVESAQEMLDAVLAALPQADIFIMAAAVADYR  281 (399)
T ss_pred             EccCCHHHHHHHHHHhcCCCCEEEEcccccccc
Confidence            6888887777665    3689999999976644

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=98.25  E-value=1.2e-05  Score=69.92  Aligned_cols=120  Identities=14%  Similarity=0.118  Sum_probs=74.8

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGY--SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      |||.|+|+||++|..++..|+..|+  +|++++|+.. ........+.....+.......++..     ..+. +.++++
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~-~~~l~~~~~dl~d~~~~~~~~~~i~~-----~~d~-~~l~~a   73 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKS-LEKLKGLRLDIYDALAAAGIDAEIKI-----SSDL-SDVAGS   73 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECccc-ccccccccchhhhchhccCCCcEEEE-----CCCH-HHhCCC
Confidence            5899999999999999999999985  5999998430 00000011110001000001111111     1123 348899


Q ss_pred             cEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecc
Q 020104           84 TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSS  133 (331)
Q Consensus        84 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS  133 (331)
                      |+||-+++.......+.. +..+.|+.-.+.+++.+.+...-.++|.+++
T Consensus        74 DiViitag~p~~~~~~r~-dl~~~n~~i~~~~~~~i~~~~~~~~viv~~n  122 (309)
T cd05294          74 DIVIITAGVPRKEGMSRL-DLAKKNAKIVKKYAKQIAEFAPDTKILVVTN  122 (309)
T ss_pred             CEEEEecCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            999999986543222333 7889999999999999888753346776665

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>KOG2733 consensus Uncharacterized membrane protein [Function unknown]

Probab=98.24  E-value=2.3e-06  Score=72.75  Aligned_cols=90  Identities=18%  Similarity=0.283  Sum_probs=65.7

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHH----CCCeEEEEecCCCCcccCCccc-cccccCCC-CCCCcEEEEeCCCCCCc
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLD----HGYSVTTTVRSELDPEHRNSKD-LSFLKNLP-GASERLRIFHADLSHPD   74 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~----~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~D~~~~~   74 (331)
                      |+...=.++|.||+||.|.++++++.+    .+...-+.+|+..     +... ++...+.. ...+...++.+|..|++
T Consensus         1 M~~~~yDvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~-----KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~   75 (423)
T KOG2733|consen    1 MAAIRYDVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEK-----KLQEVLEKVGEKTGTDLSSSVILIADSANEA   75 (423)
T ss_pred             CCCceeeEEEEccccccceeeHHHHhhhhcccCceEEEecCCHH-----HHHHHHHHHhhccCCCcccceEEEecCCCHH
Confidence            443333589999999999999999998    5788888899882     2211 22222211 11233348899999999


Q ss_pred             cHHHHhcCccEEEEecccCCC
Q 020104           75 GFDAAIAGCTGVLHVATPVDF   95 (331)
Q Consensus        75 ~~~~~~~~~d~Vih~a~~~~~   95 (331)
                      ++.+..+.+.+|+||+|++..
T Consensus        76 Sl~emak~~~vivN~vGPyR~   96 (423)
T KOG2733|consen   76 SLDEMAKQARVIVNCVGPYRF   96 (423)
T ss_pred             HHHHHHhhhEEEEecccccee
Confidence            999999999999999998763

>PRK14982 acyl-ACP reductase; Provisional

Probab=98.24  E-value=1.4e-06  Score=75.59  Aligned_cols=72  Identities=22%  Similarity=0.247  Sum_probs=51.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHC-C-CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDH-G-YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~-g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      .+++|+||||+|+||+.++++|+++ | .+++++.|+.     .....+.   .        ++..+++.   ++.+.+.
T Consensus       154 ~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~-----~rl~~La---~--------el~~~~i~---~l~~~l~  214 (340)
T PRK14982        154 SKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQ-----ERLQELQ---A--------ELGGGKIL---SLEEALP  214 (340)
T ss_pred             CCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCH-----HHHHHHH---H--------HhccccHH---hHHHHHc
Confidence            4579999999999999999999864 5 6899998876     2222211   1        11123333   3667888


Q ss_pred             CccEEEEecccCC
Q 020104           82 GCTGVLHVATPVD   94 (331)
Q Consensus        82 ~~d~Vih~a~~~~   94 (331)
                      ++|+|||+++...
T Consensus       215 ~aDiVv~~ts~~~  227 (340)
T PRK14982        215 EADIVVWVASMPK  227 (340)
T ss_pred             cCCEEEECCcCCc
Confidence            9999999998754

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=98.22  E-value=4e-05  Score=66.68  Aligned_cols=119  Identities=14%  Similarity=0.158  Sum_probs=79.1

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHH
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGY--SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDA   78 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~   78 (331)
                      |.+..+||.|+|+ |.+|+.++-.|+..|.  ++.+++++.+.    .......+........++.....|      . +
T Consensus         2 ~~~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~----~~g~~~Dl~~~~~~~~~~~i~~~~------~-~   69 (315)
T PRK00066          2 MKKQHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEK----AEGDAMDLSHAVPFTSPTKIYAGD------Y-S   69 (315)
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCch----hHHHHHHHHhhccccCCeEEEeCC------H-H
Confidence            4455679999997 9999999999998885  89999987621    111111121111111223332221      2 4


Q ss_pred             HhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Q 020104           79 AIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTS  132 (331)
Q Consensus        79 ~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  132 (331)
                      .++++|+||-+|+.......+.. +.+..|..-.+.+++.+++.+.-.+++.+|
T Consensus        70 ~~~~adivIitag~~~k~g~~R~-dll~~N~~i~~~i~~~i~~~~~~~~vivvs  122 (315)
T PRK00066         70 DCKDADLVVITAGAPQKPGETRL-DLVEKNLKIFKSIVGEVMASGFDGIFLVAS  122 (315)
T ss_pred             HhCCCCEEEEecCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            47899999999997553334455 889999999999999999886334555554

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=98.16  E-value=3.3e-05  Score=66.72  Aligned_cols=167  Identities=15%  Similarity=0.071  Sum_probs=103.8

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      |||.|+|++|.+|++++-.|+..+  .++.+++++.     .....+. +....   ....+...  ...+++.+.++++
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~-----a~g~alD-L~~~~---~~~~i~~~--~~~~~~y~~~~da   69 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVN-----TPGVAAD-LSHIN---TPAKVTGY--LGPEELKKALKGA   69 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCc-----cceeehH-hHhCC---CcceEEEe--cCCCchHHhcCCC
Confidence            489999999999999999998887  5788888763     1222221 11100   11111111  0112356778899


Q ss_pred             cEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccc-------eeecCCCCCCcccCCCCCChh
Q 020104           84 TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNA-------AVFYNDKDVDMMDETFWSDVD  156 (331)
Q Consensus        84 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~-------~~~~~~~~~~~~~E~~~~~~~  156 (331)
                      |+||-+||.......+.. +.++.|..-.+.+.+..++++.-..+|.+|-..       .|.       ......     
T Consensus        70 DivvitaG~~~k~g~tR~-dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~-------~~~~s~-----  136 (310)
T cd01337          70 DVVVIPAGVPRKPGMTRD-DLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEV-------LKKAGV-----  136 (310)
T ss_pred             CEEEEeCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHH-------HHHhcC-----
Confidence            999999997553334555 899999999999999999987444666555432       110       000000     


Q ss_pred             hhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCC
Q 020104          157 YIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPF  202 (331)
Q Consensus       157 ~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~  202 (331)
                           .++....|..-+..-++....++..+++..-++ +.++|..
T Consensus       137 -----~p~~rviG~~~LDs~R~~~~la~~l~v~~~~V~-~~v~GeH  176 (310)
T cd01337         137 -----YDPKRLFGVTTLDVVRANTFVAELLGLDPAKVN-VPVIGGH  176 (310)
T ss_pred             -----CCHHHEEeeechHHHHHHHHHHHHhCcCHHHEE-EEEEecC
Confidence                 111223444445556666667777788777777 7788865

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05442 malate dehydrogenase; Provisional

Probab=98.14  E-value=4.8e-05  Score=66.30  Aligned_cols=178  Identities=15%  Similarity=0.007  Sum_probs=104.8

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCC--C-----eEEEEecCCCC-cccCCccccccccCCCCCCCcEEEEeCCCCC
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHG--Y-----SVTTTVRSELD-PEHRNSKDLSFLKNLPGASERLRIFHADLSH   72 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g--~-----~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~   72 (331)
                      |+++ +||.|+|++|.+|+.++..|+..+  -     ++.++++++.. ........+...  ......++.+.      
T Consensus         1 ~~~~-~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~--~~~~~~~~~i~------   71 (326)
T PRK05442          1 MKAP-VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDC--AFPLLAGVVIT------   71 (326)
T ss_pred             CCCC-cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhh--hhhhcCCcEEe------
Confidence            6665 489999999999999999998765  2     78888885410 000111111110  00000122221      


Q ss_pred             CccHHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCCCCcccCCC
Q 020104           73 PDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKDVDMMDETF  151 (331)
Q Consensus        73 ~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~E~~  151 (331)
                       ....+.++++|+||-+||.......+.. +.++.|..-.+.+.+.++++. .-..+|.+|...-.     .-....+..
T Consensus        72 -~~~y~~~~daDiVVitaG~~~k~g~tR~-dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv-----~t~v~~k~s  144 (326)
T PRK05442         72 -DDPNVAFKDADVALLVGARPRGPGMERK-DLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANT-----NALIAMKNA  144 (326)
T ss_pred             -cChHHHhCCCCEEEEeCCCCCCCCCcHH-HHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHH-----HHHHHHHHc
Confidence             1234667899999999997553334555 899999999999999999954 24466666631100     000000000


Q ss_pred             CCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCC
Q 020104          152 WSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPF  202 (331)
Q Consensus       152 ~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~  202 (331)
                      +        -.++....|.+-+..-++-...++..+++..-++...|+|..
T Consensus       145 ~--------g~p~~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeH  187 (326)
T PRK05442        145 P--------DLPAENFTAMTRLDHNRALSQLAAKAGVPVADIKKMTVWGNH  187 (326)
T ss_pred             C--------CCCHHHEEeeeHHHHHHHHHHHHHHhCcChHHeEEeEEEECC
Confidence            0        012233455555666666666777778877777766777764

>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A

Probab=98.05  E-value=2.9e-06  Score=54.23  Aligned_cols=38  Identities=16%  Similarity=0.244  Sum_probs=26.9

Q ss_pred             cCCcCcccCcHHH-HHcCCccccChhhhHHHHHHHHHHc
Q 020104          291 EGYRAPGSSSKKL-LDAGFRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       291 ~~~~~~~~~~~k~-~~lg~~~~~~~~e~i~~~~~~~~~~  328 (331)
                      .+......|++|+ +.|||+|+++|+++++++++|++++
T Consensus        20 GD~~~~~Ad~~kA~~~LgW~p~~~L~~~i~~~w~W~~~n   58 (62)
T PF13950_consen   20 GDPAHLVADISKAREELGWKPKYSLEDMIRDAWNWQKKN   58 (62)
T ss_dssp             T--SEE-B--HHHHHHC----SSSHHHHHHHHHHHHHHS
T ss_pred             CchhhhhCCHHHHHHHhCCCcCCCHHHHHHHHHHHHHHC
Confidence            4556788999999 9999999999999999999999887

...

>COG3268 Uncharacterized conserved protein [Function unknown]

Probab=98.04  E-value=8.5e-06  Score=68.78  Aligned_cols=77  Identities=19%  Similarity=0.223  Sum_probs=58.6

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCccE
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTG   85 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~   85 (331)
                      ..++|.|||||.|.-++++|+.+|.+-.+..|+.        .++..+...-    +-++-..++-++..+++.+....+
T Consensus         7 ~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~--------~kl~~l~~~L----G~~~~~~p~~~p~~~~~~~~~~~V   74 (382)
T COG3268           7 YDIIIYGATGYAGGLVAEYLAREGLTAALAGRSS--------AKLDALRASL----GPEAAVFPLGVPAALEAMASRTQV   74 (382)
T ss_pred             eeEEEEccccchhHHHHHHHHHcCCchhhccCCH--------HHHHHHHHhc----CccccccCCCCHHHHHHHHhcceE
Confidence            4699999999999999999999999888888988        3444332211    223333444458888899999999


Q ss_pred             EEEecccCC
Q 020104           86 VLHVATPVD   94 (331)
Q Consensus        86 Vih~a~~~~   94 (331)
                      |+||+|++.
T Consensus        75 VlncvGPyt   83 (382)
T COG3268          75 VLNCVGPYT   83 (382)
T ss_pred             EEecccccc
Confidence            999999876

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=98.00  E-value=2.8e-05  Score=69.21  Aligned_cols=101  Identities=16%  Similarity=0.238  Sum_probs=63.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHC-CCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHH-Hhc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDH-GYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDA-AIA   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~-~~~   81 (331)
                      ++|||.|.||||++|..|++.|.++ +.+|..+.++.     +..+.+...        ......+|..+.+++.. .++
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~-----saG~~i~~~--------~~~l~~~~~~~~~~~~~~~~~  103 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADR-----KAGQSFGSV--------FPHLITQDLPNLVAVKDADFS  103 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChh-----hcCCCchhh--------CccccCccccceecCCHHHhc
Confidence            4579999999999999999999988 67999988765     222111110        11112234333333332 257


Q ss_pred             CccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEeccccee
Q 020104           82 GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAV  137 (331)
Q Consensus        82 ~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~  137 (331)
                      ++|+||-+.+.          .       ....++..+ +.+  .++|-+|+..-+
T Consensus       104 ~~DvVf~Alp~----------~-------~s~~i~~~~-~~g--~~VIDlSs~fRl  139 (381)
T PLN02968        104 DVDAVFCCLPH----------G-------TTQEIIKAL-PKD--LKIVDLSADFRL  139 (381)
T ss_pred             CCCEEEEcCCH----------H-------HHHHHHHHH-hCC--CEEEEcCchhcc
Confidence            89999976542          1       234566665 345  689999997654

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=97.99  E-value=9.5e-05  Score=64.39  Aligned_cols=175  Identities=14%  Similarity=0.013  Sum_probs=103.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC-------eEEEEecCCCCcccCCccccccccCCC-CCCCcEEEEeCCCCCCccH
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY-------SVTTTVRSELDPEHRNSKDLSFLKNLP-GASERLRIFHADLSHPDGF   76 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~   76 (331)
                      ..||.|+|++|++|++++..|+..+.       ++.+++++....  -.......+.... ....++.+ .      ...
T Consensus         3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~--~a~g~a~Dl~~~~~~~~~~~~i-~------~~~   73 (323)
T TIGR01759         3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMK--ALEGVAMELEDCAFPLLAGVVA-T------TDP   73 (323)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCccc--ccchHHHHHhhccccccCCcEE-e------cCh
Confidence            35899999999999999999998773       788888854100  0011111111110 00011211 1      233


Q ss_pred             HHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCC-ccEEEEecccceeecCCCCCCcccCCCCCCh
Q 020104           77 DAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGT-VKRVVYTSSNAAVFYNDKDVDMMDETFWSDV  155 (331)
Q Consensus        77 ~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~  155 (331)
                      .+.++++|+||.+||.......+.. +.+..|..-.+.+.+.+++... -..++.+|-.. -    ---....+..+   
T Consensus        74 ~~~~~daDvVVitAG~~~k~g~tR~-dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv-D----v~t~v~~k~s~---  144 (323)
T TIGR01759        74 EEAFKDVDAALLVGAFPRKPGMERA-DLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPA-N----TNALIASKNAP---  144 (323)
T ss_pred             HHHhCCCCEEEEeCCCCCCCCCcHH-HHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH-H----HHHHHHHHHcC---
Confidence            5677899999999997654334555 8999999999999999999873 33555554311 0    00000000000   


Q ss_pred             hhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCC
Q 020104          156 DYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPF  202 (331)
Q Consensus       156 ~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~  202 (331)
                           -.++....|.+.+..-++-...++..+++..-++-..|+|..
T Consensus       145 -----g~p~~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeH  186 (323)
T TIGR01759       145 -----DIPPKNFSAMTRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNH  186 (323)
T ss_pred             -----CCCHHHEEEeeHHHHHHHHHHHHHHhCcChHHeEEeEEEecC
Confidence                 012233455566666666666777778887777777787864

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal

Probab=97.98  E-value=1.1e-05  Score=66.73  Aligned_cols=63  Identities=13%  Similarity=0.102  Sum_probs=44.8

Q ss_pred             CcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh-------cCccE
Q 020104           13 GTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI-------AGCTG   85 (331)
Q Consensus        13 atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-------~~~d~   85 (331)
                      ++|.||.+++++|+++|++|+++.+..     ..    .   ..       ....+|+.+.+++.+++       .++|+
T Consensus        23 SSGgIG~AIA~~la~~Ga~Vvlv~~~~-----~l----~---~~-------~~~~~Dv~d~~s~~~l~~~v~~~~g~iDi   83 (227)
T TIGR02114        23 STGHLGKIITETFLSAGHEVTLVTTKR-----AL----K---PE-------PHPNLSIREIETTKDLLITLKELVQEHDI   83 (227)
T ss_pred             cccHHHHHHHHHHHHCCCEEEEEcChh-----hc----c---cc-------cCCcceeecHHHHHHHHHHHHHHcCCCCE
Confidence            389999999999999999999887643     00    0   00       01346777776665543       36899


Q ss_pred             EEEecccCC
Q 020104           86 VLHVATPVD   94 (331)
Q Consensus        86 Vih~a~~~~   94 (331)
                      +||+||..+
T Consensus        84 LVnnAgv~d   92 (227)
T TIGR02114        84 LIHSMAVSD   92 (227)
T ss_pred             EEECCEecc
Confidence            999999654

In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=97.93  E-value=8.2e-05  Score=64.73  Aligned_cols=168  Identities=14%  Similarity=0.102  Sum_probs=98.7

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCcccc-ccccCCCC-CCCcEEEEeCCCCCCccHHHHhc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKDL-SFLKNLPG-ASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      +||.|+|+ |.+|+.++..|+..|  ++|.+++|+..     ..+.. ..+..... ..........|      . +.++
T Consensus         1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~-----~~~~~a~dL~~~~~~~~~~~~i~~~~------~-~~l~   67 (306)
T cd05291           1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEE-----KAEGEALDLEDALAFLPSPVKIKAGD------Y-SDCK   67 (306)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcc-----hhhHhHhhHHHHhhccCCCeEEEcCC------H-HHhC
Confidence            47999995 999999999999998  68999999873     21111 11111100 01122222211      2 3468


Q ss_pred             CccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhc
Q 020104           82 GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKL  161 (331)
Q Consensus        82 ~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~  161 (331)
                      ++|+||++++.......+.. +.+..|..-.+.+.+.+++.+.-..++.+|-..-..    .........          
T Consensus        68 ~aDIVIitag~~~~~g~~R~-dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~----~~~~~~~~g----------  132 (306)
T cd05291          68 DADIVVITAGAPQKPGETRL-DLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVI----TYVVQKLSG----------  132 (306)
T ss_pred             CCCEEEEccCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHH----HHHHHHHhC----------
Confidence            99999999987654434455 889999999999999999987444566555311000    000000000          


Q ss_pred             CCCCchhHh-hHHHHHHHHHHHHHHcCCcEEEeccCceeCCC
Q 020104          162 DSWGKSYAI-SKTLTERAALEFAEEHGLDLVTLIPSMVVGPF  202 (331)
Q Consensus       162 ~~~~~~Y~~-~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~  202 (331)
                      .++....|. +-+..-++....++..+++..-++. .|+|..
T Consensus       133 ~p~~~v~g~gt~LDs~R~~~~la~~l~v~~~~v~~-~V~G~H  173 (306)
T cd05291         133 LPKNRVIGTGTSLDTARLRRALAEKLNVDPRSVHA-YVLGEH  173 (306)
T ss_pred             cCHHHEeeccchHHHHHHHHHHHHHHCCCcccceE-EEEecC
Confidence            111223343 2233444555555666787777775 688864

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.91  E-value=2.1e-05  Score=67.78  Aligned_cols=82  Identities=13%  Similarity=0.085  Sum_probs=57.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCe-EEEEecCCCCcccCCcccccccc-CCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYS-VTTTVRSELDPEHRNSKDLSFLK-NLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      +++++|+|| |.+|++++..|++.|.+ |++++|+.     +..++.+.+. ++......+.....|+.+.+++.+.+..
T Consensus       126 ~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~-----~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~  199 (289)
T PRK12548        126 GKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKD-----DFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIAS  199 (289)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCc-----hHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhcc
Confidence            578999998 89999999999999985 99999985     1111111111 1111113345566788887788888888


Q ss_pred             ccEEEEeccc
Q 020104           83 CTGVLHVATP   92 (331)
Q Consensus        83 ~d~Vih~a~~   92 (331)
                      +|+|||+-..
T Consensus       200 ~DilINaTp~  209 (289)
T PRK12548        200 SDILVNATLV  209 (289)
T ss_pred             CCEEEEeCCC
Confidence            9999998753

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=97.89  E-value=0.00037  Score=60.36  Aligned_cols=115  Identities=14%  Similarity=0.118  Sum_probs=77.0

Q ss_pred             eEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHGY--SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      ||.|+|++|.+|++++-.|+..+.  ++.++++++     .....+. +....   ....+....  +.+++.+.++++|
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-----a~g~a~D-L~~~~---~~~~i~~~~--~~~~~~~~~~daD   69 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-----AAGVAAD-LSHIP---TAASVKGFS--GEEGLENALKGAD   69 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-----CcEEEch-hhcCC---cCceEEEec--CCCchHHHcCCCC
Confidence            689999999999999999988874  788888865     1111111 11111   111222101  1123567889999


Q ss_pred             EEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecc
Q 020104           85 GVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSS  133 (331)
Q Consensus        85 ~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS  133 (331)
                      +||-+||.......+.. +.+..|..-.+.+.+..++.+.-..+|.+|-
T Consensus        70 ivvitaG~~~~~g~~R~-dll~~N~~I~~~i~~~i~~~~p~~iiivvsN  117 (312)
T TIGR01772        70 VVVIPAGVPRKPGMTRD-DLFNVNAGIVKDLVAAVAESCPKAMILVITN  117 (312)
T ss_pred             EEEEeCCCCCCCCccHH-HHHHHhHHHHHHHHHHHHHhCCCeEEEEecC
Confidence            99999997554334555 8899999999999999998873445555554

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.88  E-value=4.5e-05  Score=63.04  Aligned_cols=74  Identities=18%  Similarity=0.275  Sum_probs=57.8

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH-hcCcc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA-IAGCT   84 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d   84 (331)
                      |+++|.| .|-+|+.+++.|.+.|++|.++.+++     +.....  +.    .......+.+|-.|++.++++ +.++|
T Consensus         1 m~iiIiG-~G~vG~~va~~L~~~g~~Vv~Id~d~-----~~~~~~--~~----~~~~~~~v~gd~t~~~~L~~agi~~aD   68 (225)
T COG0569           1 MKIIIIG-AGRVGRSVARELSEEGHNVVLIDRDE-----ERVEEF--LA----DELDTHVVIGDATDEDVLEEAGIDDAD   68 (225)
T ss_pred             CEEEEEC-CcHHHHHHHHHHHhCCCceEEEEcCH-----HHHHHH--hh----hhcceEEEEecCCCHHHHHhcCCCcCC
Confidence            5789989 59999999999999999999999998     222221  11    113568899999999999988 67899


Q ss_pred             EEEEecc
Q 020104           85 GVLHVAT   91 (331)
Q Consensus        85 ~Vih~a~   91 (331)
                      +++-+.+
T Consensus        69 ~vva~t~   75 (225)
T COG0569          69 AVVAATG   75 (225)
T ss_pred             EEEEeeC
Confidence            9995443

>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism

Probab=97.85  E-value=5.2e-05  Score=60.34  Aligned_cols=76  Identities=16%  Similarity=0.253  Sum_probs=48.3

Q ss_pred             CceEEEecC----------------cchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeC
Q 020104            5 KGRVCVTGG----------------TGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHA   68 (331)
Q Consensus         5 ~~~ilVtGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (331)
                      +|+||||+|                ||-.|..|++++..+|++|+.+.....               + ..+.+++.+..
T Consensus         3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~---------------~-~~p~~~~~i~v   66 (185)
T PF04127_consen    3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSS---------------L-PPPPGVKVIRV   66 (185)
T ss_dssp             T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS--------------------TTEEEEE-
T ss_pred             CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcc---------------c-cccccceEEEe
Confidence            578899865                699999999999999999999887651               0 01246766664


Q ss_pred             CCCCCc----cHHHHhcCccEEEEecccCCCCCC
Q 020104           69 DLSHPD----GFDAAIAGCTGVLHVATPVDFEDK   98 (331)
Q Consensus        69 D~~~~~----~~~~~~~~~d~Vih~a~~~~~~~~   98 (331)
                      +  +.+    .+.+.+.+.|++||+|+..++...
T Consensus        67 ~--sa~em~~~~~~~~~~~Di~I~aAAVsDf~p~   98 (185)
T PF04127_consen   67 E--SAEEMLEAVKELLPSADIIIMAAAVSDFRPE   98 (185)
T ss_dssp             S--SHHHHHHHHHHHGGGGSEEEE-SB--SEEES
T ss_pred             c--chhhhhhhhccccCcceeEEEecchhheeeh
Confidence            4  333    333444578999999998886543

These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=97.85  E-value=0.00012  Score=64.46  Aligned_cols=93  Identities=20%  Similarity=0.220  Sum_probs=57.8

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC---eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY---SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      |++|+|.||||++|+.|++.|.+++|   ++..+.++.     ...+.+..        .+.+....|+.+     ..+.
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~-----~~g~~l~~--------~g~~i~v~d~~~-----~~~~   62 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASAR-----SAGKELSF--------KGKELKVEDLTT-----FDFS   62 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccc-----cCCCeeee--------CCceeEEeeCCH-----HHHc
Confidence            36899999999999999999999776   457777665     22222211        122344445533     1346


Q ss_pred             CccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEeccc
Q 020104           82 GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSN  134 (331)
Q Consensus        82 ~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~  134 (331)
                      ++|+||-+++..                 .+..++....+.| + ++|=.||.
T Consensus        63 ~vDvVf~A~g~g-----------------~s~~~~~~~~~~G-~-~VIDlS~~   96 (334)
T PRK14874         63 GVDIALFSAGGS-----------------VSKKYAPKAAAAG-A-VVIDNSSA   96 (334)
T ss_pred             CCCEEEECCChH-----------------HHHHHHHHHHhCC-C-EEEECCch
Confidence            899999776531                 1233445555556 4 66666764

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=97.84  E-value=4e-05  Score=75.84  Aligned_cols=77  Identities=14%  Similarity=0.124  Sum_probs=57.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCC-Ce-------------EEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHG-YS-------------VTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHAD   69 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~-------------V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D   69 (331)
                      .|++|+|+|+ |++|+..++.|++.+ ++             |.+.+++.     ...++   +.+   ..++++.+..|
T Consensus       568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~-----~~a~~---la~---~~~~~~~v~lD  635 (1042)
T PLN02819        568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYL-----KDAKE---TVE---GIENAEAVQLD  635 (1042)
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCH-----HHHHH---HHH---hcCCCceEEee
Confidence            4679999996 999999999998753 34             66666665     22222   211   11467889999


Q ss_pred             CCCCccHHHHhcCccEEEEeccc
Q 020104           70 LSHPDGFDAAIAGCTGVLHVATP   92 (331)
Q Consensus        70 ~~~~~~~~~~~~~~d~Vih~a~~   92 (331)
                      +.|.+++.++++++|+||.+...
T Consensus       636 v~D~e~L~~~v~~~DaVIsalP~  658 (1042)
T PLN02819        636 VSDSESLLKYVSQVDVVISLLPA  658 (1042)
T ss_pred             cCCHHHHHHhhcCCCEEEECCCc
Confidence            99999999999999999998864

>PLN02602 lactate dehydrogenase

Probab=97.79  E-value=0.00062  Score=59.98  Aligned_cols=115  Identities=15%  Similarity=0.112  Sum_probs=74.7

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      +||.|+|+ |.+|+.++-.|+..+  .++.+++++...    .......+...........+...     .+. +.++++
T Consensus        38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~----~~g~a~DL~~~~~~~~~~~i~~~-----~dy-~~~~da  106 (350)
T PLN02602         38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDK----LRGEMLDLQHAAAFLPRTKILAS-----TDY-AVTAGS  106 (350)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCch----hhHHHHHHHhhhhcCCCCEEEeC-----CCH-HHhCCC
Confidence            59999995 999999999999876  478999887621    11111111111111112222211     123 347899


Q ss_pred             cEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Q 020104           84 TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTS  132 (331)
Q Consensus        84 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  132 (331)
                      |+||-+||.......+.. +.+..|+.-.+.+.+.+++.+.-..+|.+|
T Consensus       107 DiVVitAG~~~k~g~tR~-dll~~N~~I~~~i~~~I~~~~p~~ivivvt  154 (350)
T PLN02602        107 DLCIVTAGARQIPGESRL-NLLQRNVALFRKIIPELAKYSPDTILLIVS  154 (350)
T ss_pred             CEEEECCCCCCCcCCCHH-HHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            999999997553334454 889999999999999999886444566555

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=97.76  E-value=0.00017  Score=63.73  Aligned_cols=102  Identities=21%  Similarity=0.234  Sum_probs=60.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHC-CCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEE-eCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDH-GYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF-HADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~   81 (331)
                      ||+||+|+||||++|+.+++.|.+. ++++.++.++.     +..+.+...      .+.+..+ ..++.+.+..  ...
T Consensus         1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-----~~g~~l~~~------~~~~~~~~~~~~~~~~~~--~~~   67 (343)
T PRK00436          1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-----SAGKPLSDV------HPHLRGLVDLVLEPLDPE--ILA   67 (343)
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-----ccCcchHHh------CcccccccCceeecCCHH--Hhc
Confidence            3579999999999999999999986 57887776643     111111110      0111111 1223333322  446


Q ss_pred             CccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEeccccee
Q 020104           82 GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAV  137 (331)
Q Consensus        82 ~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~  137 (331)
                      ++|+|+-|...          .       ....++..+.+.+  +++|=.|+..-+
T Consensus        68 ~vD~Vf~alP~----------~-------~~~~~v~~a~~aG--~~VID~S~~fR~  104 (343)
T PRK00436         68 GADVVFLALPH----------G-------VSMDLAPQLLEAG--VKVIDLSADFRL  104 (343)
T ss_pred             CCCEEEECCCc----------H-------HHHHHHHHHHhCC--CEEEECCcccCC
Confidence            79999876542          0       1234556666666  588888875533

>PRK06223 malate dehydrogenase; Reviewed

Probab=97.75  E-value=0.00024  Score=61.98  Aligned_cols=116  Identities=12%  Similarity=0.041  Sum_probs=73.2

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCcccc-ccccCCCC-CCCcEEEEeCCCCCCccHHHHhc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKDL-SFLKNLPG-ASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      ||||.|+|+ |.+|..++..++..|. +|.+++++.+     ..... ..+..... .....++     ....++ +.++
T Consensus         2 ~~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~-----~~~~~~~dl~~~~~~~~~~~~i-----~~~~d~-~~~~   69 (307)
T PRK06223          2 RKKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEG-----VPQGKALDIAEAAPVEGFDTKI-----TGTNDY-EDIA   69 (307)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCc-----hhHHHHHHHHhhhhhcCCCcEE-----EeCCCH-HHHC
Confidence            469999998 9999999999998865 9999999773     21111 11111100 0001111     111223 3478


Q ss_pred             CccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecc
Q 020104           82 GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSS  133 (331)
Q Consensus        82 ~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS  133 (331)
                      ++|+||.+++.......+.. +....|+.-.+.+++.+.+...-..+|.+|-
T Consensus        70 ~aDiVii~~~~p~~~~~~r~-~~~~~n~~i~~~i~~~i~~~~~~~~viv~tN  120 (307)
T PRK06223         70 GSDVVVITAGVPRKPGMSRD-DLLGINAKIMKDVAEGIKKYAPDAIVIVVTN  120 (307)
T ss_pred             CCCEEEECCCCCCCcCCCHH-HHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            99999999876543323333 6778899999999998888763345665543

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.74  E-value=0.00011  Score=54.49  Aligned_cols=98  Identities=24%  Similarity=0.358  Sum_probs=55.2

Q ss_pred             eEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCccE
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTG   85 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~   85 (331)
                      ||.|+||||++|+.|++.|.+.. +++..+..+..    +....+............+.+.  + .+.    +.+.++|+
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~--~-~~~----~~~~~~Dv   69 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR----SAGKPLSEVFPHPKGFEDLSVE--D-ADP----EELSDVDV   69 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT----TTTSBHHHTTGGGTTTEEEBEE--E-TSG----HHHTTESE
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc----ccCCeeehhccccccccceeEe--e-cch----hHhhcCCE
Confidence            69999999999999999999864 56665555441    1222333222111111112221  2 222    33478999


Q ss_pred             EEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEeccc
Q 020104           86 VLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSN  134 (331)
Q Consensus        86 Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~  134 (331)
                      ||.|.+.          .       ....+...+.+.+ + ++|=.|+.
T Consensus        70 vf~a~~~----------~-------~~~~~~~~~~~~g-~-~ViD~s~~   99 (121)
T PF01118_consen   70 VFLALPH----------G-------ASKELAPKLLKAG-I-KVIDLSGD   99 (121)
T ss_dssp             EEE-SCH----------H-------HHHHHHHHHHHTT-S-EEEESSST
T ss_pred             EEecCch----------h-------HHHHHHHHHhhCC-c-EEEeCCHH
Confidence            9988652          1       1234556666667 4 67766663

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=97.73  E-value=0.001  Score=57.10  Aligned_cols=172  Identities=15%  Similarity=0.024  Sum_probs=97.6

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      +||.|+|+ |++|+.++-.|+.++  .++.++++... ........+...  .+..... ..+.+| .+    .+.++++
T Consensus         1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~-~~~G~a~DL~~~--~~~~~~~-~~i~~~-~~----y~~~~~a   70 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEE-KAEGVALDLSHA--AAPLGSD-VKITGD-GD----YEDLKGA   70 (313)
T ss_pred             CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccc-cccchhcchhhc--chhccCc-eEEecC-CC----hhhhcCC
Confidence            48999999 999999999998775  48999998842 111111111111  0101111 222222 11    3557889


Q ss_pred             cEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCC
Q 020104           84 TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDS  163 (331)
Q Consensus        84 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~  163 (331)
                      |+|+-.||...-...+.. +.++.|..-...+.+...+.+ ..-++.+-|.=|--    .-...-+.+        ..+.
T Consensus        71 DiVvitAG~prKpGmtR~-DLl~~Na~I~~~i~~~i~~~~-~d~ivlVvtNPvD~----~ty~~~k~s--------g~p~  136 (313)
T COG0039          71 DIVVITAGVPRKPGMTRL-DLLEKNAKIVKDIAKAIAKYA-PDAIVLVVTNPVDI----LTYIAMKFS--------GFPK  136 (313)
T ss_pred             CEEEEeCCCCCCCCCCHH-HHHHhhHHHHHHHHHHHHhhC-CCeEEEEecCcHHH----HHHHHHHhc--------CCCc
Confidence            999999987664444555 899999999999999999987 34444333311100    000000000        0011


Q ss_pred             CCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCC
Q 020104          164 WGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGP  201 (331)
Q Consensus       164 ~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~  201 (331)
                      .+..-+.+.+..-++-...++..+++...++...+-.+
T Consensus       137 ~rvig~gt~LDsaR~~~~lae~~~v~~~~V~~~ViGeH  174 (313)
T COG0039         137 NRVIGSGTVLDSARFRTFLAEKLGVSPKDVHAYVIGEH  174 (313)
T ss_pred             cceecccchHHHHHHHHHHHHHhCCChhHceeeEeccC
Confidence            12233445555666666666777777776665544433

>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic

Probab=97.71  E-value=0.00011  Score=65.51  Aligned_cols=102  Identities=18%  Similarity=0.110  Sum_probs=68.4

Q ss_pred             CCceEEEecC----------------cchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEe
Q 020104            4 GKGRVCVTGG----------------TGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH   67 (331)
Q Consensus         4 ~~~~ilVtGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (331)
                      .+++||||||                ||.+|..++++|...|++|+++.+...     ..        .   ...+  ..
T Consensus       184 ~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~-----~~--------~---~~~~--~~  245 (390)
T TIGR00521       184 EGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVS-----LL--------T---PPGV--KS  245 (390)
T ss_pred             CCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCc-----cC--------C---CCCc--EE
Confidence            3578999998                478999999999999999999887651     10        0   1222  34


Q ss_pred             CCCCCCccH-HHHh----cCccEEEEecccCCCCCCChh-------hHHHHHHHHHHHHHHHHHHhcC
Q 020104           68 ADLSHPDGF-DAAI----AGCTGVLHVATPVDFEDKEPE-------EVITQRAINGTLGILKSCLKSG  123 (331)
Q Consensus        68 ~D~~~~~~~-~~~~----~~~d~Vih~a~~~~~~~~~~~-------~~~~~~n~~~~~~l~~~~~~~~  123 (331)
                      .|+.+.+++ .+++    .+.|++||+||..++......       ...+..|+..+..+++..++..
T Consensus       246 ~~v~~~~~~~~~~~~~~~~~~D~~i~~Aavsd~~~~~~~~~Ki~~~~~~~~l~L~~~pdil~~l~~~~  313 (390)
T TIGR00521       246 IKVSTAEEMLEAALNELAKDFDIFISAAAVADFKPKTVFEGKIKKQGEELSLKLVKNPDIIAEVRKIK  313 (390)
T ss_pred             EEeccHHHHHHHHHHhhcccCCEEEEccccccccccccccccccccCCceeEEEEeCcHHHHHHHhhC
Confidence            677777776 4344    368999999998774321110       1223356666777777777654

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=97.69  E-value=0.0012  Score=57.45  Aligned_cols=112  Identities=17%  Similarity=0.167  Sum_probs=73.2

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCcc-ccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSK-DLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      |||.|.|+ |.+|..++..|+.+|  .+|.+++++..     ... ....+...............      +. +.+++
T Consensus         1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~-----~~~g~a~dl~~~~~~~~~~~i~~~------d~-~~l~~   67 (308)
T cd05292           1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKA-----KAEGEAMDLAHGTPFVKPVRIYAG------DY-ADCKG   67 (308)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCch-----hhhhHHHHHHccccccCCeEEeeC------CH-HHhCC
Confidence            47999997 999999999999998  68999999872     211 11112111111111222222      23 35789


Q ss_pred             ccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEe
Q 020104           83 CTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYT  131 (331)
Q Consensus        83 ~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~  131 (331)
                      +|+||-+++.......+.. +....|+.-.+.+.+.+++.+.-..++..
T Consensus        68 aDiViita~~~~~~~~~r~-dl~~~n~~i~~~~~~~l~~~~~~giiiv~  115 (308)
T cd05292          68 ADVVVITAGANQKPGETRL-DLLKRNVAIFKEIIPQILKYAPDAILLVV  115 (308)
T ss_pred             CCEEEEccCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence            9999999986543333444 78889999999999999887633344444

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=97.68  E-value=0.00092  Score=58.12  Aligned_cols=117  Identities=16%  Similarity=0.124  Sum_probs=75.6

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      .+||.|+|+ |.+|+.++..|+..|  .++.+++++...    .......+...........+...     .+.+ .+++
T Consensus         3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~----~~g~a~Dl~~~~~~~~~~~v~~~-----~dy~-~~~~   71 (312)
T cd05293           3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDK----LKGEAMDLQHGSAFLKNPKIEAD-----KDYS-VTAN   71 (312)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccH----HHHHHHHHHHhhccCCCCEEEEC-----CCHH-HhCC
Confidence            468999996 999999999998876  478889887621    11111111111111111122221     1233 3789


Q ss_pred             ccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecc
Q 020104           83 CTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSS  133 (331)
Q Consensus        83 ~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS  133 (331)
                      +|+||-+||.......+.. +.+..|..-.+.+.+.+++.+.-..++.+|-
T Consensus        72 adivvitaG~~~k~g~~R~-dll~~N~~i~~~~~~~i~~~~p~~~vivvsN  121 (312)
T cd05293          72 SKVVIVTAGARQNEGESRL-DLVQRNVDIFKGIIPKLVKYSPNAILLVVSN  121 (312)
T ss_pred             CCEEEECCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHhCCCcEEEEccC
Confidence            9999999987553333454 8899999999999999999874445665553

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=97.67  E-value=0.0017  Score=56.76  Aligned_cols=117  Identities=14%  Similarity=0.107  Sum_probs=75.0

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEe-CCCCCCccHHHHhcC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH-ADLSHPDGFDAAIAG   82 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~D~~~~~~~~~~~~~   82 (331)
                      ++||.|+| +|.+|+.++..++..|. +|.++++++....   ...+.............++.. .|      + +.+++
T Consensus         6 ~~KI~IIG-aG~vG~~ia~~la~~gl~~i~LvDi~~~~~~---~~~ld~~~~~~~~~~~~~I~~~~d------~-~~l~~   74 (321)
T PTZ00082          6 RRKISLIG-SGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQ---GKALDISHSNVIAGSNSKVIGTNN------Y-EDIAG   74 (321)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCCCCeEEEEeCCCchhh---HHHHHHHhhhhccCCCeEEEECCC------H-HHhCC
Confidence            46899999 59999999999998884 8999998873210   011111111110111222221 22      3 35789


Q ss_pred             ccEEEEecccCCCCCC-----ChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecc
Q 020104           83 CTGVLHVATPVDFEDK-----EPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSS  133 (331)
Q Consensus        83 ~d~Vih~a~~~~~~~~-----~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS  133 (331)
                      +|+||.+++.......     +. .+.+..|+.-.+.+++.+.+..+-..+|.+|-
T Consensus        75 aDiVI~tag~~~~~~~~~~~~~r-~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sN  129 (321)
T PTZ00082         75 SDVVIVTAGLTKRPGKSDKEWNR-DDLLPLNAKIMDEVAEGIKKYCPNAFVIVITN  129 (321)
T ss_pred             CCEEEECCCCCCCCCCCcCCCCH-HHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            9999999986542222     33 37788899999999999998873336776664

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=97.66  E-value=0.00025  Score=60.31  Aligned_cols=114  Identities=16%  Similarity=0.048  Sum_probs=75.7

Q ss_pred             EEEecCcchhHHHHHHHHHHCC----CeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            8 VCVTGGTGFIASWLIMRLLDHG----YSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g----~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      |.|+||+|.+|..++..|+..|    .+|.+++++..     .... ...+..........++     .--.+..+.+++
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~-----~l~~~~~dl~~~~~~~~~~~i-----~~~~d~~~~~~~   70 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEE-----KLKGVAMDLQDAVEPLADIKV-----SITDDPYEAFKD   70 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcc-----cchHHHHHHHHhhhhccCcEE-----EECCchHHHhCC
Confidence            5789999999999999999888    78999998772     2111 1111111111001111     112235677899


Q ss_pred             ccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Q 020104           83 CTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTS  132 (331)
Q Consensus        83 ~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  132 (331)
                      +|+||.+++.......... .....|+.-.+.+++.+++...-..+|.+|
T Consensus        71 aDiVv~t~~~~~~~g~~r~-~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t  119 (263)
T cd00650          71 ADVVIITAGVGRKPGMGRL-DLLKRNVPIVKEIGDNIEKYSPDAWIIVVS  119 (263)
T ss_pred             CCEEEECCCCCCCcCCCHH-HHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            9999999986554333444 788899999999999999886344566554

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=97.66  E-value=0.00018  Score=64.96  Aligned_cols=174  Identities=13%  Similarity=-0.001  Sum_probs=103.1

Q ss_pred             ceEEEecCcchhHHHHHHHHHHC-------CC--eEEEEecCCCCcccCCccccccccCCC-CCCCcEEEEeCCCCCCcc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDH-------GY--SVTTTVRSELDPEHRNSKDLSFLKNLP-GASERLRIFHADLSHPDG   75 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~-------g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~   75 (331)
                      -||.|+|++|.+|.+++-.|+..       +.  ++..++++.++..    .....+.... ....++.+..+|      
T Consensus       101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~----G~amDL~daa~~~~~~v~i~~~~------  170 (444)
T PLN00112        101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALE----GVAMELEDSLYPLLREVSIGIDP------  170 (444)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhH----HHHHHHHHhhhhhcCceEEecCC------
Confidence            47999999999999999999987       53  7888888763111    1111111100 001122222222      


Q ss_pred             HHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHh-cCCccEEEEecccceeecCCCCCCcccCCCCCC
Q 020104           76 FDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLK-SGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSD  154 (331)
Q Consensus        76 ~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~-~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~  154 (331)
                       .+.++++|+||-+||.......+.. +.++.|..-.+.+.+...+ ++.-..+|.+|-..-..     -...-+..   
T Consensus       171 -ye~~kdaDiVVitAG~prkpG~tR~-dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~-----t~v~~k~s---  240 (444)
T PLN00112        171 -YEVFQDAEWALLIGAKPRGPGMERA-DLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTN-----ALICLKNA---  240 (444)
T ss_pred             -HHHhCcCCEEEECCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHH-----HHHHHHHc---
Confidence             3567889999999997654444555 8999999999999999999 55344666665421000     00000000   


Q ss_pred             hhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCC
Q 020104          155 VDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFIC  204 (331)
Q Consensus       155 ~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~  204 (331)
                           +.++....=..+.+..-++-...+++.+++..-++-..|+|...+
T Consensus       241 -----g~~~~rViGtgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGd  285 (444)
T PLN00112        241 -----PNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST  285 (444)
T ss_pred             -----CCCCcceEEeeccHHHHHHHHHHHHHhCcCHHHcccceEEecCCC
Confidence                 001122223334455555556666677888888877788886433

>PTZ00117 malate dehydrogenase; Provisional

Probab=97.65  E-value=0.00048  Score=60.23  Aligned_cols=118  Identities=16%  Similarity=0.158  Sum_probs=75.4

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+||.|+|| |.+|+.++..|+..| .++.+++++.+... ...-.+......  ......+.     ...+++ .++++
T Consensus         5 ~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~-g~~lDl~~~~~~--~~~~~~i~-----~~~d~~-~l~~A   74 (319)
T PTZ00117          5 RKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQ-GKALDLKHFSTL--VGSNINIL-----GTNNYE-DIKDS   74 (319)
T ss_pred             CcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccch-hHHHHHhhhccc--cCCCeEEE-----eCCCHH-HhCCC
Confidence            468999997 999999999998888 78999998873111 000001110000  00111111     112344 67899


Q ss_pred             cEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecc
Q 020104           84 TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSS  133 (331)
Q Consensus        84 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS  133 (331)
                      |+||.+++.......+.. +.+..|..-.+.+++.+.+..+-..+|.+|-
T Consensus        75 DiVVitag~~~~~g~~r~-dll~~n~~i~~~i~~~i~~~~p~a~vivvsN  123 (319)
T PTZ00117         75 DVVVITAGVQRKEEMTRE-DLLTINGKIMKSVAESVKKYCPNAFVICVTN  123 (319)
T ss_pred             CEEEECCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            999999986543333444 7888999989999999998863345666654

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.63  E-value=0.00028  Score=61.83  Aligned_cols=98  Identities=16%  Similarity=0.205  Sum_probs=56.6

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEE--EecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHH
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTT--TVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDA   78 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~   78 (331)
                      |+. |++|.|+||||++|..|++.|.+++|.+.-  ..++..    .....+.    +    .+   ...++.+.+.. +
T Consensus         1 m~~-~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~----~aG~~l~----~----~~---~~l~~~~~~~~-~   63 (336)
T PRK05671          1 MSQ-PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSE----SAGHSVP----F----AG---KNLRVREVDSF-D   63 (336)
T ss_pred             CCC-CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcc----cCCCeec----c----CC---cceEEeeCChH-H
Confidence            654 469999999999999999999987654322  223331    1111111    0    11   12333333322 2


Q ss_pred             HhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccc
Q 020104           79 AIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNA  135 (331)
Q Consensus        79 ~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~  135 (331)
                       ++++|+||-+.+.          .       ....++..+.+.| + ++|=.|+..
T Consensus        64 -~~~vD~vFla~p~----------~-------~s~~~v~~~~~~G-~-~VIDlS~~f  100 (336)
T PRK05671         64 -FSQVQLAFFAAGA----------A-------VSRSFAEKARAAG-C-SVIDLSGAL  100 (336)
T ss_pred             -hcCCCEEEEcCCH----------H-------HHHHHHHHHHHCC-C-eEEECchhh
Confidence             4789999976542          1       0133667777777 4 677777754

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.59  E-value=0.00019  Score=66.26  Aligned_cols=78  Identities=21%  Similarity=0.115  Sum_probs=55.1

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |....|+|+|+|+++ +|..+++.|++.|++|++++++...   ...+....+..     .+++++.+|..+     +..
T Consensus         1 ~~~~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~~~---~~~~~~~~l~~-----~~~~~~~~~~~~-----~~~   66 (450)
T PRK14106          1 MELKGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKEED---QLKEALEELGE-----LGIELVLGEYPE-----EFL   66 (450)
T ss_pred             CCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchH---HHHHHHHHHHh-----cCCEEEeCCcch-----hHh
Confidence            544568999999877 9999999999999999999886510   01111122211     256777788765     345


Q ss_pred             cCccEEEEeccc
Q 020104           81 AGCTGVLHVATP   92 (331)
Q Consensus        81 ~~~d~Vih~a~~   92 (331)
                      .++|+||++++.
T Consensus        67 ~~~d~vv~~~g~   78 (450)
T PRK14106         67 EGVDLVVVSPGV   78 (450)
T ss_pred             hcCCEEEECCCC
Confidence            678999998875

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=97.59  E-value=0.0019  Score=55.99  Aligned_cols=168  Identities=15%  Similarity=0.050  Sum_probs=98.3

Q ss_pred             eEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCccccccccCCCCC--CCcEEEEeCCCCCCccHHHHhcC
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKDLSFLKNLPGA--SERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      ||.|.|+ |.+|+.++..|+.++  -++.+++.+.+.    .......+......  ..+++...+|       .+.+++
T Consensus         1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~----a~g~a~DL~~~~~~~~~~~~~i~~~~-------y~~~~~   68 (307)
T cd05290           1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGV----AEGEALDFHHATALTYSTNTKIRAGD-------YDDCAD   68 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcch----hhHHHHHHHhhhccCCCCCEEEEECC-------HHHhCC
Confidence            5889997 999999999999887  379999886621    11111111111111  1234444333       356789


Q ss_pred             ccEEEEecccCCCCCCC--hhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhh
Q 020104           83 CTGVLHVATPVDFEDKE--PEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRK  160 (331)
Q Consensus        83 ~d~Vih~a~~~~~~~~~--~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~  160 (331)
                      +|+||-+||.......+  .. +.+..|..-.+.+.+.+++++.-..++.+|-..-..    .........         
T Consensus        69 aDivvitaG~~~kpg~tr~R~-dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~----t~~~~k~sg---------  134 (307)
T cd05290          69 ADIIVITAGPSIDPGNTDDRL-DLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIA----VYIAATEFD---------  134 (307)
T ss_pred             CCEEEECCCCCCCCCCCchHH-HHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHH----HHHHHHHhC---------
Confidence            99999999875432223  34 889999999999999999987333444444311000    000000000         


Q ss_pred             cCCCCchhHh-hHHHHHHHHHHHHHHcCCcEEEeccCceeCCC
Q 020104          161 LDSWGKSYAI-SKTLTERAALEFAEEHGLDLVTLIPSMVVGPF  202 (331)
Q Consensus       161 ~~~~~~~Y~~-~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~  202 (331)
                       .++.-..|. +-+..-++-...++..+++...++.. |+|..
T Consensus       135 -~p~~rviG~gt~LDs~R~~~~la~~l~v~~~~V~~~-ViGeH  175 (307)
T cd05290         135 -YPANKVIGTGTMLDTARLRRIVADKYGVDPKNVTGY-VLGEH  175 (307)
T ss_pred             -cChhheecccchHHHHHHHHHHHHHhCCCcccEEEE-EEecC
Confidence             011122333 44555556666666678887777765 77764

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=97.54  E-value=0.00011  Score=64.06  Aligned_cols=34  Identities=21%  Similarity=0.258  Sum_probs=31.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      +|+|.|+| +|.+|..++..|++.|++|++.+|++
T Consensus         2 ~~~V~VIG-~G~mG~~iA~~la~~G~~V~v~d~~~   35 (308)
T PRK06129          2 MGSVAIIG-AGLIGRAWAIVFARAGHEVRLWDADP   35 (308)
T ss_pred             CcEEEEEC-ccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence            46899999 79999999999999999999999987

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.53  E-value=0.00019  Score=66.20  Aligned_cols=72  Identities=21%  Similarity=0.229  Sum_probs=57.3

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH-hcCcc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA-IAGCT   84 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d   84 (331)
                      |+|+|+|+ |.+|+++++.|.+.|++|+++++++     +   ..+.+.+    ..+++.+.+|..+...+.++ +.++|
T Consensus         1 m~viIiG~-G~ig~~~a~~L~~~g~~v~vid~~~-----~---~~~~~~~----~~~~~~~~gd~~~~~~l~~~~~~~a~   67 (453)
T PRK09496          1 MKIIIVGA-GQVGYTLAENLSGENNDVTVIDTDE-----E---RLRRLQD----RLDVRTVVGNGSSPDVLREAGAEDAD   67 (453)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCcEEEEECCH-----H---HHHHHHh----hcCEEEEEeCCCCHHHHHHcCCCcCC
Confidence            47999996 9999999999999999999999987     2   2222211    13578899999998888887 77899


Q ss_pred             EEEEec
Q 020104           85 GVLHVA   90 (331)
Q Consensus        85 ~Vih~a   90 (331)
                      .||-+.
T Consensus        68 ~vi~~~   73 (453)
T PRK09496         68 LLIAVT   73 (453)
T ss_pred             EEEEec
Confidence            998654

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=97.46  E-value=0.0014  Score=56.82  Aligned_cols=115  Identities=13%  Similarity=0.116  Sum_probs=72.6

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCcc-c-cccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSK-D-LSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      |||.|.|+ |++|..++..|+..|+ +|+++++...     ... . +..............     +.--.++.+ +++
T Consensus         2 ~KV~VIGa-G~vG~~iA~~la~~g~~~VvlvDi~~~-----l~~g~a~d~~~~~~~~~~~~~-----i~~t~d~~~-~~~   69 (305)
T TIGR01763         2 KKISVIGA-GFVGATTAFRLAEKELADLVLLDVVEG-----IPQGKALDMYEASPVGGFDTK-----VTGTNNYAD-TAN   69 (305)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCCC-----hhHHHHHhhhhhhhccCCCcE-----EEecCCHHH-hCC
Confidence            58999996 9999999999999876 8999998652     111 1 111110000000111     111123444 678


Q ss_pred             ccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecc
Q 020104           83 CTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSS  133 (331)
Q Consensus        83 ~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS  133 (331)
                      +|+||-+++.......+.. +.+..|..-.+.+++.+.+...-..+|.+|-
T Consensus        70 aDiVIitag~p~~~~~sR~-~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tN  119 (305)
T TIGR01763        70 SDIVVITAGLPRKPGMSRE-DLLSMNAGIVREVTGRIMEHSPNPIIVVVSN  119 (305)
T ss_pred             CCEEEEcCCCCCCcCCCHH-HHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            9999999986543323344 7888999999999999888763345665554

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=97.45  E-value=0.00077  Score=50.14  Aligned_cols=97  Identities=21%  Similarity=0.351  Sum_probs=55.5

Q ss_pred             ceEEEecCcchhHHHHHHHHHH-CCCeEEEEe-cCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLD-HGYSVTTTV-RSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      |||.|.|++|-+|+.+++.+.+ .++++.+.. |+++.   ........+....  ..+       +.-.+++.++++.+
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~---~~g~d~g~~~~~~--~~~-------~~v~~~l~~~~~~~   68 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSA---KVGKDVGELAGIG--PLG-------VPVTDDLEELLEEA   68 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTST---TTTSBCHHHCTSS--T-S-------SBEBS-HHHHTTH-
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcc---cccchhhhhhCcC--Ccc-------cccchhHHHhcccC
Confidence            5899999999999999999998 578866554 44310   0111111110000  011       11125678888889


Q ss_pred             cEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecc
Q 020104           84 TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSS  133 (331)
Q Consensus        84 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS  133 (331)
                      |+||.+..        +         ..+...++.|.+++ + ++|.-+|
T Consensus        69 DVvIDfT~--------p---------~~~~~~~~~~~~~g-~-~~ViGTT   99 (124)
T PF01113_consen   69 DVVIDFTN--------P---------DAVYDNLEYALKHG-V-PLVIGTT   99 (124)
T ss_dssp             SEEEEES---------H---------HHHHHHHHHHHHHT---EEEEE-S
T ss_pred             CEEEEcCC--------h---------HHhHHHHHHHHhCC-C-CEEEECC
Confidence            99997642        2         23445777888887 4 5554343

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK04148 hypothetical protein; Provisional

Probab=97.44  E-value=0.0016  Score=48.59  Aligned_cols=92  Identities=18%  Similarity=0.225  Sum_probs=65.3

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      .++|++.| +| -|.+++..|.+.|++|++++.++     ..   .+..++     ..+.++.+|+.++.  -++-+++|
T Consensus        17 ~~kileIG-~G-fG~~vA~~L~~~G~~ViaIDi~~-----~a---V~~a~~-----~~~~~v~dDlf~p~--~~~y~~a~   79 (134)
T PRK04148         17 NKKIVELG-IG-FYFKVAKKLKESGFDVIVIDINE-----KA---VEKAKK-----LGLNAFVDDLFNPN--LEIYKNAK   79 (134)
T ss_pred             CCEEEEEE-ec-CCHHHHHHHHHCCCEEEEEECCH-----HH---HHHHHH-----hCCeEEECcCCCCC--HHHHhcCC
Confidence            46899999 67 89999999999999999999998     22   222211     35789999999876  24456789


Q ss_pred             EEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEE
Q 020104           85 GVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVY  130 (331)
Q Consensus        85 ~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~  130 (331)
                      .|+-+=.        +. ++       ...+++.+++.+ +.-+|.
T Consensus        80 liysirp--------p~-el-------~~~~~~la~~~~-~~~~i~  108 (134)
T PRK04148         80 LIYSIRP--------PR-DL-------QPFILELAKKIN-VPLIIK  108 (134)
T ss_pred             EEEEeCC--------CH-HH-------HHHHHHHHHHcC-CCEEEE
Confidence            9884321        11 32       246888888888 654443

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=97.44  E-value=0.0019  Score=54.71  Aligned_cols=67  Identities=18%  Similarity=0.198  Sum_probs=44.9

Q ss_pred             CceEEEecCcchhHHHHHHHHHHC-CCeEEEEe-cCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDH-GYSVTTTV-RSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      +++|.|+|++|.+|+.+++.+.+. +.++.++. +++     +.....               -..++....++.+++++
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~-----~~~~~~---------------~~~~i~~~~dl~~ll~~   60 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPG-----SPLVGQ---------------GALGVAITDDLEAVLAD   60 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC-----cccccc---------------CCCCccccCCHHHhccC
Confidence            368999999999999999988864 67877654 443     111100               11233334567777778


Q ss_pred             ccEEEEecc
Q 020104           83 CTGVLHVAT   91 (331)
Q Consensus        83 ~d~Vih~a~   91 (331)
                      +|+||.++.
T Consensus        61 ~DvVid~t~   69 (257)
T PRK00048         61 ADVLIDFTT   69 (257)
T ss_pred             CCEEEECCC
Confidence            999998764

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.43  E-value=0.0003  Score=53.21  Aligned_cols=75  Identities=17%  Similarity=0.166  Sum_probs=52.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCe-EEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYS-VTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      ..++++|.|+ |..|+.++.+|.+.|.+ |+++.|+.     ++.+.+....    ....++++..     +++.+.+.+
T Consensus        11 ~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~-----~ra~~l~~~~----~~~~~~~~~~-----~~~~~~~~~   75 (135)
T PF01488_consen   11 KGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTP-----ERAEALAEEF----GGVNIEAIPL-----EDLEEALQE   75 (135)
T ss_dssp             TTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSH-----HHHHHHHHHH----TGCSEEEEEG-----GGHCHHHHT
T ss_pred             CCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCH-----HHHHHHHHHc----CccccceeeH-----HHHHHHHhh
Confidence            4679999996 88999999999999975 99999987     3333332211    1123444433     345577889


Q ss_pred             ccEEEEecccC
Q 020104           83 CTGVLHVATPV   93 (331)
Q Consensus        83 ~d~Vih~a~~~   93 (331)
                      +|+||++.+..
T Consensus        76 ~DivI~aT~~~   86 (135)
T PF01488_consen   76 ADIVINATPSG   86 (135)
T ss_dssp             ESEEEE-SSTT
T ss_pred             CCeEEEecCCC
Confidence            99999987653

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=97.42  E-value=0.00066  Score=58.85  Aligned_cols=113  Identities=14%  Similarity=0.077  Sum_probs=73.6

Q ss_pred             EEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCccE
Q 020104            8 VCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTG   85 (331)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~   85 (331)
                      |.|.|+ |.+|+.++..|+..|  .++.+++++.+.    .......+..............+     .+ .+.++++|+
T Consensus         1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~----~~g~~~DL~~~~~~~~~~~i~~~-----~~-~~~l~~aDi   69 (300)
T cd00300           1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEK----AKGDALDLSHASAFLATGTIVRG-----GD-YADAADADI   69 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccH----HHHHHHhHHHhccccCCCeEEEC-----CC-HHHhCCCCE
Confidence            467885 899999999999888  789999987721    11111122111111111222221     11 357889999


Q ss_pred             EEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Q 020104           86 VLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTS  132 (331)
Q Consensus        86 Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  132 (331)
                      ||.+|+.......+.. +....|+.-.+.+.+.+++.+.-..+|.+|
T Consensus        70 VIitag~p~~~~~~R~-~l~~~n~~i~~~~~~~i~~~~p~~~viv~s  115 (300)
T cd00300          70 VVITAGAPRKPGETRL-DLINRNAPILRSVITNLKKYGPDAIILVVS  115 (300)
T ss_pred             EEEcCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            9999987553334455 888899999999999999886344566555

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=97.40  E-value=0.00067  Score=59.97  Aligned_cols=99  Identities=19%  Similarity=0.210  Sum_probs=58.0

Q ss_pred             ceEEEecCcchhHHHHHHHHHHC-CCeEEEE-ecCCCCcccCCccccccccCCCCCCCcEEEE-eCCCCCCccHHHHhcC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDH-GYSVTTT-VRSELDPEHRNSKDLSFLKNLPGASERLRIF-HADLSHPDGFDAAIAG   82 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~   82 (331)
                      ++|.|+||||++|..+++.|.+. +.++..+ +++.     +....+....      +.+... ..++.+ .+..++..+
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~-----sagk~~~~~~------~~l~~~~~~~~~~-~~~~~~~~~   68 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE-----SAGKPVSEVH------PHLRGLVDLNLEP-IDEEEIAED   68 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch-----hcCCChHHhC------ccccccCCceeec-CCHHHhhcC
Confidence            48999999999999999999977 5787744 4333     1111111100      111111 111221 123444458


Q ss_pred             ccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccc
Q 020104           83 CTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNA  135 (331)
Q Consensus        83 ~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~  135 (331)
                      +|+||-|....                 ....++..+.+.|  +++|=.|+..
T Consensus        69 ~DvVf~alP~~-----------------~s~~~~~~~~~~G--~~VIDlS~~f  102 (346)
T TIGR01850        69 ADVVFLALPHG-----------------VSAELAPELLAAG--VKVIDLSADF  102 (346)
T ss_pred             CCEEEECCCch-----------------HHHHHHHHHHhCC--CEEEeCChhh
Confidence            99999776421                 1345666666666  6899888854

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=97.36  E-value=0.0026  Score=56.63  Aligned_cols=173  Identities=12%  Similarity=0.005  Sum_probs=96.7

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCC-e----EEE--E--ecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccH
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGY-S----VTT--T--VRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGF   76 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~-~----V~~--~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~   76 (331)
                      -||.|+|++|.+|.+++-.|+..+. .    |.+  +  +++.++.   ....+...........++.+..+       -
T Consensus        45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a---~g~a~DL~d~a~~~~~~v~i~~~-------~  114 (387)
T TIGR01757        45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEAL---EGVAMELEDSLYPLLREVSIGID-------P  114 (387)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhh---hHHHHHHHHhhhhhcCceEEecC-------C
Confidence            4899999999999999999988762 2    333  3  4444110   11111111100001112222221       1


Q ss_pred             HHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCCCCcccCCCCCCh
Q 020104           77 DAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKDVDMMDETFWSDV  155 (331)
Q Consensus        77 ~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~  155 (331)
                      .+.++++|+||-+||.......+.. +.+..|+.-.+.+.+.++++. .-.++|.+|-..-..     -..+-+..    
T Consensus       115 y~~~kdaDIVVitAG~prkpg~tR~-dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~-----t~v~~k~s----  184 (387)
T TIGR01757       115 YEVFEDADWALLIGAKPRGPGMERA-DLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTN-----ALIAMKNA----  184 (387)
T ss_pred             HHHhCCCCEEEECCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHH-----HHHHHHHc----
Confidence            3567899999999997654334555 899999999999999999953 234666665411000     00000000    


Q ss_pred             hhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCC
Q 020104          156 DYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPF  202 (331)
Q Consensus       156 ~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~  202 (331)
                          ..++....=..+.+..-++-...+++.+++..-++-..|+|..
T Consensus       185 ----g~~~~rviG~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeH  227 (387)
T TIGR01757       185 ----PNIPRKNFHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNH  227 (387)
T ss_pred             ----CCCcccEEEecchhHHHHHHHHHHHHHCcChhHcceeEEEecC
Confidence                0011122223345555556666666677777777667788864

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.35  E-value=0.0012  Score=58.56  Aligned_cols=35  Identities=31%  Similarity=0.494  Sum_probs=29.8

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~   39 (331)
                      +++|+|+||||++|+.|++.|.+.. .++.++.++.
T Consensus         3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~   38 (349)
T PRK08664          3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASE   38 (349)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcCh
Confidence            5799999999999999999999875 4888875654

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=97.29  E-value=0.0034  Score=55.29  Aligned_cols=27  Identities=22%  Similarity=0.356  Sum_probs=24.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGY   30 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~   30 (331)
                      ..++|.|.||||++|..|++.|.+++|
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~h   32 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDF   32 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCC
Confidence            457899999999999999999998776

>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]

Probab=97.27  E-value=0.05  Score=41.55  Aligned_cols=184  Identities=15%  Similarity=0.099  Sum_probs=98.0

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCC-----cc----H
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHP-----DG----F   76 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-----~~----~   76 (331)
                      .+|+|.||-|-+|++.++.+.+++|-|.-++....     ..             .... +.+|..+.     ++    +
T Consensus         4 grVivYGGkGALGSacv~~FkannywV~siDl~eN-----e~-------------Ad~s-I~V~~~~swtEQe~~v~~~v   64 (236)
T KOG4022|consen    4 GRVIVYGGKGALGSACVEFFKANNYWVLSIDLSEN-----EQ-------------ADSS-ILVDGNKSWTEQEQSVLEQV   64 (236)
T ss_pred             ceEEEEcCcchHhHHHHHHHHhcCeEEEEEeeccc-----cc-------------ccce-EEecCCcchhHHHHHHHHHH
Confidence            58999999999999999999999999988776651     11             1111 22233222     11    2


Q ss_pred             HHHh--cCccEEEEecccCCCCCCChh------hHHHHHHHHHHHHHHHHHHhc-CCccEEEEecccceeecCCCCCCcc
Q 020104           77 DAAI--AGCTGVLHVATPVDFEDKEPE------EVITQRAINGTLGILKSCLKS-GTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        77 ~~~~--~~~d~Vih~a~~~~~~~~~~~------~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                      -+.+  +++|.||..|+-..-......      +.++.-.+-....-...+.++ + ..-++.+.......         
T Consensus        65 g~sL~gekvDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK-~GGLL~LtGAkaAl---------  134 (236)
T KOG4022|consen   65 GSSLQGEKVDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLK-PGGLLQLTGAKAAL---------  134 (236)
T ss_pred             HHhhcccccceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccC-CCceeeeccccccc---------
Confidence            2223  269999999975442222211      122222221111112222222 2 22444444332221         


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH-cCCcE----EEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE-HGLDL----VTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~-~~~~~----~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                       +.+|           .--.||..|.+..++++.++.+ +|+|-    ..+-|-.+-.|-.+.                 
T Consensus       135 -~gTP-----------gMIGYGMAKaAVHqLt~SLaak~SGlP~gsaa~~ilPVTLDTPMNRK-----------------  185 (236)
T KOG4022|consen  135 -GGTP-----------GMIGYGMAKAAVHQLTSSLAAKDSGLPDGSAALTILPVTLDTPMNRK-----------------  185 (236)
T ss_pred             -CCCC-----------cccchhHHHHHHHHHHHHhcccccCCCCCceeEEEeeeeccCccccc-----------------
Confidence             1111           1226999999999999988754 35542    223333333332111                 


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhc
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLE  248 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~  248 (331)
                       -.+......|....-+++-++.-..
T Consensus       186 -wMP~ADfssWTPL~fi~e~flkWtt  210 (236)
T KOG4022|consen  186 -WMPNADFSSWTPLSFISEHFLKWTT  210 (236)
T ss_pred             -cCCCCcccCcccHHHHHHHHHHHhc
Confidence             1111111378888888888887665

>cd05295 MDH_like Malate dehydrogenase-like

Probab=97.27  E-value=0.0084  Score=54.36  Aligned_cols=177  Identities=12%  Similarity=0.037  Sum_probs=101.4

Q ss_pred             ceEEEecCcchhHHHHHHHHHHC---C--Ce--EEEEecCCCCcccCCccccccccCCC-CCCCcEEEEeCCCCCCccHH
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDH---G--YS--VTTTVRSELDPEHRNSKDLSFLKNLP-GASERLRIFHADLSHPDGFD   77 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~---g--~~--V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~   77 (331)
                      -+|+||||+|.||.+|+-.+++-   |  ..  +++++....  ........-.+.... ....++.+..       ...
T Consensus       124 ~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~--~~~l~G~amDL~D~a~pll~~v~i~~-------~~~  194 (452)
T cd05295         124 LQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPEN--LEKLKGLVMEVEDLAFPLLRGISVTT-------DLD  194 (452)
T ss_pred             eEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCc--hhhHHHHHHHHHHhHHhhcCCcEEEE-------CCH
Confidence            47999999999999999999873   3  23  344444210  000000001111100 0011233321       124


Q ss_pred             HHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCC-ccEEEEecccceeecCCCCCCcccCCCCCChh
Q 020104           78 AAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGT-VKRVVYTSSNAAVFYNDKDVDMMDETFWSDVD  156 (331)
Q Consensus        78 ~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~  156 (331)
                      +.++++|+||-+|+.......+.. +..+.|..-.+.+.++..+.+. -.+++.+.|.-+-    -.-..+-...     
T Consensus       195 ea~~daDvvIitag~prk~G~~R~-DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD----~~t~i~~k~a-----  264 (452)
T cd05295         195 VAFKDAHVIVLLDDFLIKEGEDLE-GCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLN----LKTSILIKYA-----  264 (452)
T ss_pred             HHhCCCCEEEECCCCCCCcCCCHH-HHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHH----HHHHHHHHHc-----
Confidence            678899999999997654444555 8999999999999999998873 1456655541110    0000000000     


Q ss_pred             hhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCC
Q 020104          157 YIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFIC  204 (331)
Q Consensus       157 ~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~  204 (331)
                         +-.++.+..|...+..-++....+++.+++..-++-..|+|....
T Consensus       265 ---pgiP~~rVig~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~  309 (452)
T cd05295         265 ---PSIPRKNIIAVARLQENRAKALLARKLNVNSAGIKDVIVWGNIGG  309 (452)
T ss_pred             ---CCCCHHHEEEecchHHHHHHHHHHHHhCcCHHHceeeEEEEccCC
Confidence               011233445555566556666677777888888877888886433

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=97.25  E-value=0.00081  Score=59.22  Aligned_cols=68  Identities=13%  Similarity=0.229  Sum_probs=44.5

Q ss_pred             eEEEecCcchhHHHHHHHHHHCCCeEE---EEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHGYSVT---TTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      +|+|.||||++|..|++.|.+++|.+.   .+.+..     .....+..        .+......|+.     ...+.++
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~-----~~g~~~~~--------~~~~~~~~~~~-----~~~~~~~   62 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDR-----SAGRKVTF--------KGKELEVNEAK-----IESFEGI   62 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccc-----cCCCeeee--------CCeeEEEEeCC-----hHHhcCC
Confidence            589999999999999999999877644   344554     22222221        23445555553     2234789


Q ss_pred             cEEEEeccc
Q 020104           84 TGVLHVATP   92 (331)
Q Consensus        84 d~Vih~a~~   92 (331)
                      |+||-+++.
T Consensus        63 D~v~~a~g~   71 (339)
T TIGR01296        63 DIALFSAGG   71 (339)
T ss_pred             CEEEECCCH
Confidence            999988763

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>COG4982 3-oxoacyl-[acyl-carrier protein]

Probab=97.25  E-value=0.013  Score=54.07  Aligned_cols=170  Identities=22%  Similarity=0.248  Sum_probs=102.1

Q ss_pred             CceEEEecC-cchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCC----CCCCcEEEEeCCCCCCccHHHH
Q 020104            5 KGRVCVTGG-TGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLP----GASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         5 ~~~ilVtGa-tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      .+..+|||| -|-||-.++..|++.|..|+++.-+-      ..+.....+.+.    .....+-++..++....++..+
T Consensus       396 d~valVTGA~~gSIaa~Vv~~LL~gGAtVI~TTS~~------s~~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdAl  469 (866)
T COG4982         396 DKVALVTGASKGSIAAAVVARLLAGGATVIATTSRL------SEERTEFYRSLYARHARYGAALWVVPANMGSYSDVDAL  469 (866)
T ss_pred             cceEEEecCCCcchHHHHHHHHHhCCcEEEEEcccc------cHHHHHHHHHHHHhhCCCCceEEEEeccccchhhHHHH
Confidence            356899998 69999999999999999999886554      223333333332    1223455677788777777666


Q ss_pred             hc---------------------CccEEEEecccCCC---CCCChh-hHHHHHHHHHHHHHHHHHHhcCC---c---cEE
Q 020104           80 IA---------------------GCTGVLHVATPVDF---EDKEPE-EVITQRAINGTLGILKSCLKSGT---V---KRV  128 (331)
Q Consensus        80 ~~---------------------~~d~Vih~a~~~~~---~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~---~---~~~  128 (331)
                      ++                     .+|.+|-+|++...   ...++. +...++-+-..++++-..++.+.   +   -++
T Consensus       470 IewIg~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~agsraE~~~rilLw~V~Rliggl~~~~s~r~v~~R~hV  549 (866)
T COG4982         470 IEWIGDEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGSRAEFAMRILLWNVLRLIGGLKKQGSSRGVDTRLHV  549 (866)
T ss_pred             HHHhccccccccCCcceecccccCcceeeecccCCccCccccCCchHHHHHHHHHHHHHHHHHHhhhhccccCcccceEE
Confidence            53                     24788888875331   122222 13344445556667766666541   1   144


Q ss_pred             EEecccceeecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcC----CcEEEeccCceeCCCC
Q 020104          129 VYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHG----LDLVTLIPSMVVGPFI  203 (331)
Q Consensus       129 v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~----~~~~ilRp~~v~G~~~  203 (331)
                      |...|        ++...+--               ...|+.+|+..+.++.+++.+++    +..+--++|++=|-+.
T Consensus       550 VLPgS--------PNrG~FGg---------------DGaYgEsK~aldav~~RW~sEs~Wa~~vsl~~A~IGWtrGTGL  605 (866)
T COG4982         550 VLPGS--------PNRGMFGG---------------DGAYGESKLALDAVVNRWHSESSWAARVSLAHALIGWTRGTGL  605 (866)
T ss_pred             EecCC--------CCCCccCC---------------CcchhhHHHHHHHHHHHhhccchhhHHHHHhhhheeeeccccc
Confidence            44444        22222221               23699999999999999887663    2233334555555443

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=97.24  E-value=0.0089  Score=48.40  Aligned_cols=114  Identities=17%  Similarity=0.216  Sum_probs=68.1

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccCCcc--------c---------cccccCCCCCCCcEEEE
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNSK--------D---------LSFLKNLPGASERLRIF   66 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~--------~---------~~~~~~~~~~~~~~~~~   66 (331)
                      ..+|+|.|++| +|+++++.|+..| .++++++.+.-...+-...        .         .+.++++. ..-+++.+
T Consensus        19 ~s~VlviG~gg-lGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lN-p~v~i~~~   96 (198)
T cd01485          19 SAKVLIIGAGA-LGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELN-PNVKLSIV   96 (198)
T ss_pred             hCcEEEECCCH-HHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHC-CCCEEEEE
Confidence            35899999765 9999999999999 5688888764211100000        0         01111111 11244555


Q ss_pred             eCCCCC-CccHHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceee
Q 020104           67 HADLSH-PDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVF  138 (331)
Q Consensus        67 ~~D~~~-~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~  138 (331)
                      ..++.+ .+...+.+.++|+||.+..        +.        .....+-+.|++.+ + .+|+.++.+.+|
T Consensus        97 ~~~~~~~~~~~~~~~~~~dvVi~~~d--------~~--------~~~~~ln~~c~~~~-i-p~i~~~~~G~~G  151 (198)
T cd01485          97 EEDSLSNDSNIEEYLQKFTLVIATEE--------NY--------ERTAKVNDVCRKHH-I-PFISCATYGLIG  151 (198)
T ss_pred             ecccccchhhHHHHHhCCCEEEECCC--------CH--------HHHHHHHHHHHHcC-C-CEEEEEeecCEE
Confidence            555542 3455667788999995522        11        11234567888887 4 889888877665

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=97.23  E-value=0.00089  Score=53.59  Aligned_cols=68  Identities=19%  Similarity=0.085  Sum_probs=44.4

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      ||+|.|.| +|.||+.|+++|.+.||+|++..|+.+    ...+.......     +.        ....+..++.+..|
T Consensus         1 m~~~~i~G-tGniG~alA~~~a~ag~eV~igs~r~~----~~~~a~a~~l~-----~~--------i~~~~~~dA~~~aD   62 (211)
T COG2085           1 MMIIAIIG-TGNIGSALALRLAKAGHEVIIGSSRGP----KALAAAAAALG-----PL--------ITGGSNEDAAALAD   62 (211)
T ss_pred             CcEEEEec-cChHHHHHHHHHHhCCCeEEEecCCCh----hHHHHHHHhhc-----cc--------cccCChHHHHhcCC
Confidence            35666655 899999999999999999999877763    11111111100     11        23345667778899


Q ss_pred             EEEEec
Q 020104           85 GVLHVA   90 (331)
Q Consensus        85 ~Vih~a   90 (331)
                      +||-..
T Consensus        63 VVvLAV   68 (211)
T COG2085          63 VVVLAV   68 (211)
T ss_pred             EEEEec
Confidence            998543

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.21  E-value=0.0019  Score=59.71  Aligned_cols=73  Identities=23%  Similarity=0.320  Sum_probs=56.0

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH-hcCc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA-IAGC   83 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~   83 (331)
                      +++|+|.|+ |.+|+.+++.|.+.|++|+++++++     +.   ...+.+.   ..++.++.+|..+.+.+.++ ++++
T Consensus       231 ~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~~-----~~---~~~~~~~---~~~~~~i~gd~~~~~~L~~~~~~~a  298 (453)
T PRK09496        231 VKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERDP-----ER---AEELAEE---LPNTLVLHGDGTDQELLEEEGIDEA  298 (453)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCH-----HH---HHHHHHH---CCCCeEEECCCCCHHHHHhcCCccC
Confidence            578999996 9999999999999999999999887     22   2222111   13577899999998888665 4688


Q ss_pred             cEEEEe
Q 020104           84 TGVLHV   89 (331)
Q Consensus        84 d~Vih~   89 (331)
                      |.||-+
T Consensus       299 ~~vi~~  304 (453)
T PRK09496        299 DAFIAL  304 (453)
T ss_pred             CEEEEC
Confidence            998843

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=97.19  E-value=0.012  Score=44.40  Aligned_cols=113  Identities=13%  Similarity=0.187  Sum_probs=68.9

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccC-----------Cccccc----cccCCCCCCCcEEEEeC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHR-----------NSKDLS----FLKNLPGASERLRIFHA   68 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~-----------~~~~~~----~~~~~~~~~~~~~~~~~   68 (331)
                      .++|+|.| .|-+|+.+++.|...|. ++.+++.+.-....-           ...+..    .+.+. ...-+++.+..
T Consensus         2 ~~~v~iiG-~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~-np~~~v~~~~~   79 (135)
T PF00899_consen    2 NKRVLIIG-AGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEI-NPDVEVEAIPE   79 (135)
T ss_dssp             T-EEEEES-TSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHH-STTSEEEEEES
T ss_pred             CCEEEEEC-cCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHh-cCceeeeeeec
Confidence            36899999 59999999999999995 788888765211000           000000    01111 11234566666


Q ss_pred             CCCCCccHHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceee
Q 020104           69 DLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVF  138 (331)
Q Consensus        69 D~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~  138 (331)
                      ++ +.+...++++++|+||.+...       .         ..-..+.+.|++.+  .++|+.++.+.+|
T Consensus        80 ~~-~~~~~~~~~~~~d~vi~~~d~-------~---------~~~~~l~~~~~~~~--~p~i~~~~~g~~G  130 (135)
T PF00899_consen   80 KI-DEENIEELLKDYDIVIDCVDS-------L---------AARLLLNEICREYG--IPFIDAGVNGFYG  130 (135)
T ss_dssp             HC-SHHHHHHHHHTSSEEEEESSS-------H---------HHHHHHHHHHHHTT---EEEEEEEETTEE
T ss_pred             cc-ccccccccccCCCEEEEecCC-------H---------HHHHHHHHHHHHcC--CCEEEEEeecCEE
Confidence            66 445677778899999987432       1         11235677888887  4888888765443

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=97.18  E-value=0.001  Score=48.86  Aligned_cols=69  Identities=22%  Similarity=0.337  Sum_probs=52.5

Q ss_pred             EEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH-hcCccEE
Q 020104            8 VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA-IAGCTGV   86 (331)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~V   86 (331)
                      |+|.|. |-+|..+++.|.+.+.+|.++.+++     +.   .+.+.+     .++.++.||..+++.+.++ +++++.|
T Consensus         1 vvI~G~-g~~~~~i~~~L~~~~~~vvvid~d~-----~~---~~~~~~-----~~~~~i~gd~~~~~~l~~a~i~~a~~v   66 (116)
T PF02254_consen    1 VVIIGY-GRIGREIAEQLKEGGIDVVVIDRDP-----ER---VEELRE-----EGVEVIYGDATDPEVLERAGIEKADAV   66 (116)
T ss_dssp             EEEES--SHHHHHHHHHHHHTTSEEEEEESSH-----HH---HHHHHH-----TTSEEEES-TTSHHHHHHTTGGCESEE
T ss_pred             eEEEcC-CHHHHHHHHHHHhCCCEEEEEECCc-----HH---HHHHHh-----cccccccccchhhhHHhhcCccccCEE
Confidence            678885 8999999999999777999999987     22   222222     3578999999999988886 4688988


Q ss_pred             EEec
Q 020104           87 LHVA   90 (331)
Q Consensus        87 ih~a   90 (331)
                      |-+.
T Consensus        67 v~~~   70 (116)
T PF02254_consen   67 VILT   70 (116)
T ss_dssp             EEES
T ss_pred             EEcc
Confidence            8554

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=97.18  E-value=0.0036  Score=52.00  Aligned_cols=116  Identities=16%  Similarity=0.074  Sum_probs=73.5

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeE---EEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSV---TTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V---~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      +-||.|.||.|.||+.|.-.|. ....|   .+.+...   -..-...+.++..      +  .......-+++++..++
T Consensus        28 ~~KVAvlGAaGGIGQPLSLLlK-~np~Vs~LaLYDi~~---~~GVaaDlSHI~T------~--s~V~g~~g~~~L~~al~   95 (345)
T KOG1494|consen   28 GLKVAVLGAAGGIGQPLSLLLK-LNPLVSELALYDIAN---TPGVAADLSHINT------N--SSVVGFTGADGLENALK   95 (345)
T ss_pred             cceEEEEecCCccCccHHHHHh-cCcccceeeeeeccc---CCcccccccccCC------C--CceeccCChhHHHHHhc
Confidence            4589999999999999987665 43333   3333221   0022222222110      1  11122333458999999


Q ss_pred             CccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecc
Q 020104           82 GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSS  133 (331)
Q Consensus        82 ~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS  133 (331)
                      ++|+||--||...-..... ++.+++|..-...|..++.++.+-.++.++|-
T Consensus        96 ~advVvIPAGVPRKPGMTR-DDLFn~NAgIv~~l~~aia~~cP~A~i~vIsN  146 (345)
T KOG1494|consen   96 GADVVVIPAGVPRKPGMTR-DDLFNINAGIVKTLAAAIAKCCPNALILVISN  146 (345)
T ss_pred             CCCEEEecCCCCCCCCCcH-HHhhhcchHHHHHHHHHHHhhCccceeEeecC
Confidence            9999999998765332233 48999999999999999999863445555553

>PRK08057 cobalt-precorrin-6x reductase; Reviewed

Probab=97.16  E-value=0.0078  Score=50.36  Aligned_cols=92  Identities=17%  Similarity=0.203  Sum_probs=69.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      ||++|||.|||+ =|+.|++.|.+.|++|++.+....     ..  .        ....+..+.+-+.+.+++.+.+.  
T Consensus         1 ~~~~IlvlgGT~-egr~la~~L~~~g~~v~~Svat~~-----g~--~--------~~~~~~v~~G~l~~~~~l~~~l~~~   64 (248)
T PRK08057          1 MMPRILLLGGTS-EARALARALAAAGVDIVLSLAGRT-----GG--P--------ADLPGPVRVGGFGGAEGLAAYLREE   64 (248)
T ss_pred             CCceEEEEechH-HHHHHHHHHHhCCCeEEEEEccCC-----CC--c--------ccCCceEEECCCCCHHHHHHHHHHC
Confidence            467899999986 599999999999999988766551     11  0        01356777788878889999985  


Q ss_pred             CccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCcc
Q 020104           82 GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVK  126 (331)
Q Consensus        82 ~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~  126 (331)
                      +++.||....++.              ..-+.++.++|++.+ ++
T Consensus        65 ~i~~VIDATHPfA--------------~~is~~a~~ac~~~~-ip   94 (248)
T PRK08057         65 GIDLVIDATHPYA--------------AQISANAAAACRALG-IP   94 (248)
T ss_pred             CCCEEEECCCccH--------------HHHHHHHHHHHHHhC-Cc
Confidence            7999998765432              223578899999998 64

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=97.16  E-value=0.0041  Score=54.73  Aligned_cols=113  Identities=12%  Similarity=0.124  Sum_probs=69.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCC-------------cccc----ccccCCCCCCCcEEEE
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRN-------------SKDL----SFLKNLPGASERLRIF   66 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~-------------~~~~----~~~~~~~~~~~~~~~~   66 (331)
                      .++|+|.|+ |-+|+++++.|+..|. ++.+++++.-...+-.             ..+.    +.+.++. ..-.++.+
T Consensus        24 ~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~in-p~v~i~~~  101 (338)
T PRK12475         24 EKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKIN-SEVEIVPV  101 (338)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHC-CCcEEEEE
Confidence            468999995 7799999999999996 7888888752110000             0000    1111111 11345666


Q ss_pred             eCCCCCCccHHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceee
Q 020104           67 HADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVF  138 (331)
Q Consensus        67 ~~D~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~  138 (331)
                      ..|+. .+.+.++++++|+||.+.-       +.     +.    -..+-++|.+.+  ..+|+.+..+.+|
T Consensus       102 ~~~~~-~~~~~~~~~~~DlVid~~D-------~~-----~~----r~~in~~~~~~~--ip~i~~~~~g~~G  154 (338)
T PRK12475        102 VTDVT-VEELEELVKEVDLIIDATD-------NF-----DT----RLLINDLSQKYN--IPWIYGGCVGSYG  154 (338)
T ss_pred             eccCC-HHHHHHHhcCCCEEEEcCC-------CH-----HH----HHHHHHHHHHcC--CCEEEEEecccEE
Confidence            67774 4567788899999997642       11     11    123556777777  4778887766554

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.16  E-value=0.0019  Score=50.65  Aligned_cols=56  Identities=16%  Similarity=0.160  Sum_probs=46.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+++|+|+|+++.+|..+++.|.++|.+|.++.|..                                  +++.+.+.++
T Consensus        43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~----------------------------------~~l~~~l~~a   88 (168)
T cd01080          43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT----------------------------------KNLKEHTKQA   88 (168)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc----------------------------------hhHHHHHhhC
Confidence            458999999977789999999999999998887754                                  2466778889


Q ss_pred             cEEEEecccC
Q 020104           84 TGVLHVATPV   93 (331)
Q Consensus        84 d~Vih~a~~~   93 (331)
                      |+||.+.+..
T Consensus        89 DiVIsat~~~   98 (168)
T cd01080          89 DIVIVAVGKP   98 (168)
T ss_pred             CEEEEcCCCC
Confidence            9999887653

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=97.09  E-value=0.0098  Score=52.41  Aligned_cols=113  Identities=13%  Similarity=0.179  Sum_probs=70.8

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCC------c-------cc----cccccCCCCCCCcEEEE
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRN------S-------KD----LSFLKNLPGASERLRIF   66 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~------~-------~~----~~~~~~~~~~~~~~~~~   66 (331)
                      ..+|+|.|+ |.+|+++++.|+..|. ++.+++++.-...+-.      .       .+    .+.+.++. ..-.++.+
T Consensus        24 ~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~in-p~v~v~~~  101 (339)
T PRK07688         24 EKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEIN-SDVRVEAI  101 (339)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHC-CCcEEEEE
Confidence            468999995 9999999999999996 8999988642110000      0       00    01111111 11235556


Q ss_pred             eCCCCCCccHHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceee
Q 020104           67 HADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVF  138 (331)
Q Consensus        67 ~~D~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~  138 (331)
                      ..++. .+.+.+++++.|+||.+.-       ++         ..-..+.++|.+.+  ..+|+.|+...+|
T Consensus       102 ~~~~~-~~~~~~~~~~~DlVid~~D-------n~---------~~r~~ln~~~~~~~--iP~i~~~~~g~~G  154 (339)
T PRK07688        102 VQDVT-AEELEELVTGVDLIIDATD-------NF---------ETRFIVNDAAQKYG--IPWIYGACVGSYG  154 (339)
T ss_pred             eccCC-HHHHHHHHcCCCEEEEcCC-------CH---------HHHHHHHHHHHHhC--CCEEEEeeeeeee
Confidence            66664 4556778889999997632       11         11235667888887  4788888777665

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.04  E-value=0.00069  Score=53.94  Aligned_cols=68  Identities=19%  Similarity=0.073  Sum_probs=47.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+++|.|+| .|-||+.+++.|..-|.+|++++|..     ........        ..+        ...++.++++.+
T Consensus        35 ~g~tvgIiG-~G~IG~~vA~~l~~fG~~V~~~d~~~-----~~~~~~~~--------~~~--------~~~~l~ell~~a   92 (178)
T PF02826_consen   35 RGKTVGIIG-YGRIGRAVARRLKAFGMRVIGYDRSP-----KPEEGADE--------FGV--------EYVSLDELLAQA   92 (178)
T ss_dssp             TTSEEEEES-TSHHHHHHHHHHHHTT-EEEEEESSC-----HHHHHHHH--------TTE--------EESSHHHHHHH-
T ss_pred             CCCEEEEEE-EcCCcCeEeeeeecCCceeEEecccC-----Chhhhccc--------ccc--------eeeehhhhcchh
Confidence            467999999 69999999999999999999999988     21110100        111        224677888899


Q ss_pred             cEEEEecccC
Q 020104           84 TGVLHVATPV   93 (331)
Q Consensus        84 d~Vih~a~~~   93 (331)
                      |+|+.+....
T Consensus        93 Div~~~~plt  102 (178)
T PF02826_consen   93 DIVSLHLPLT  102 (178)
T ss_dssp             SEEEE-SSSS
T ss_pred             hhhhhhhccc
Confidence            9999887644

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=97.00  E-value=0.0019  Score=57.78  Aligned_cols=35  Identities=23%  Similarity=0.359  Sum_probs=32.3

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      +++|.|.||+|.+|+.+++.|.+.|++|.+.+|+.
T Consensus        98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~  132 (374)
T PRK11199         98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD  132 (374)
T ss_pred             cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence            46899999999999999999999999999998864

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=96.98  E-value=0.017  Score=46.76  Aligned_cols=112  Identities=19%  Similarity=0.214  Sum_probs=65.9

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCc------cc---------cccccCCCCCCCcEEEEeC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNS------KD---------LSFLKNLPGASERLRIFHA   68 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~------~~---------~~~~~~~~~~~~~~~~~~~   68 (331)
                      .++|+|.|+.| +|+++++.|+..|. .+.+++.+.-...+-..      +.         .+.++++. ..-.++.+..
T Consensus        21 ~s~VlIiG~gg-lG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lN-p~v~i~~~~~   98 (197)
T cd01492          21 SARILLIGLKG-LGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALN-PRVKVSVDTD   98 (197)
T ss_pred             hCcEEEEcCCH-HHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHC-CCCEEEEEec
Confidence            46899999655 99999999999994 68888766421110000      00         01112211 1124455555


Q ss_pred             CCCCCccHHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceee
Q 020104           69 DLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVF  138 (331)
Q Consensus        69 D~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~  138 (331)
                      .+.  +...+.+.++|+||.+...       .         ..-..+-+.|++.+ + .+|+.++.+.+|
T Consensus        99 ~~~--~~~~~~~~~~dvVi~~~~~-------~---------~~~~~ln~~c~~~~-i-p~i~~~~~G~~G  148 (197)
T cd01492          99 DIS--EKPEEFFSQFDVVVATELS-------R---------AELVKINELCRKLG-V-KFYATGVHGLFG  148 (197)
T ss_pred             Ccc--ccHHHHHhCCCEEEECCCC-------H---------HHHHHHHHHHHHcC-C-CEEEEEecCCEE
Confidence            454  2345667899999965321       1         11234557888887 4 788888877665

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.96  E-value=0.0082  Score=48.83  Aligned_cols=114  Identities=12%  Similarity=0.149  Sum_probs=67.0

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCC-----------ccccccc-cCCCCCCCc--EEEEeCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRN-----------SKDLSFL-KNLPGASER--LRIFHAD   69 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~-----------~~~~~~~-~~~~~~~~~--~~~~~~D   69 (331)
                      ..+|+|.| +|-+|+++++.|...|. ++.+++++.-...+-.           ..+...+ ..+....+.  ++.+...
T Consensus        21 ~~~VlviG-~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~   99 (202)
T TIGR02356        21 NSHVLIIG-AGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKER   99 (202)
T ss_pred             CCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhc
Confidence            46899999 69999999999999995 8888887741110000           0000000 001111233  3344444


Q ss_pred             CCCCccHHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceee
Q 020104           70 LSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVF  138 (331)
Q Consensus        70 ~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~  138 (331)
                      + +.+.+.+.++++|+||.+...       ..         .-..+.+.|++.+  ..+|+.++.+.+|
T Consensus       100 i-~~~~~~~~~~~~D~Vi~~~d~-------~~---------~r~~l~~~~~~~~--ip~i~~~~~g~~G  149 (202)
T TIGR02356       100 V-TAENLELLINNVDLVLDCTDN-------FA---------TRYLINDACVALG--TPLISAAVVGFGG  149 (202)
T ss_pred             C-CHHHHHHHHhCCCEEEECCCC-------HH---------HHHHHHHHHHHcC--CCEEEEEeccCeE
Confidence            4 334567788899999976421       11         1124667778877  4788887655443

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=96.94  E-value=0.016  Score=50.22  Aligned_cols=165  Identities=14%  Similarity=0.097  Sum_probs=94.5

Q ss_pred             EecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCccccccccCCCC-CCCcEEEEeCCCCCCccHHHHhcCccEE
Q 020104           10 VTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKDLSFLKNLPG-ASERLRIFHADLSHPDGFDAAIAGCTGV   86 (331)
Q Consensus        10 VtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~d~V   86 (331)
                      |.| +|.+|+.++..|+..+  .++.+++++.+.    .......+..... ...++.+..+|       .+.++++|+|
T Consensus         1 iIG-aG~VG~~~a~~l~~~~l~~el~L~Di~~~~----~~g~a~Dl~~~~~~~~~~~~i~~~~-------~~~~~daDiv   68 (299)
T TIGR01771         1 IIG-AGNVGSSTAFALLNQGIADEIVLIDINKDK----AEGEAMDLQHAASFLPTPKKIRSGD-------YSDCKDADLV   68 (299)
T ss_pred             CCC-cCHHHHHHHHHHHhcCCCCEEEEEeCCCCh----hhHHHHHHHHhhcccCCCeEEecCC-------HHHHCCCCEE
Confidence            456 5999999999998876  378999886621    1111111111111 11223332222       3577899999


Q ss_pred             EEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCCCCc
Q 020104           87 LHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGK  166 (331)
Q Consensus        87 ih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~  166 (331)
                      |-+|+.......+.. +.+..|..-.+.+.+.+++++.-..++.+|-..-..    .........          .++..
T Consensus        69 Vitag~~rk~g~~R~-dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~----t~~~~~~sg----------~p~~~  133 (299)
T TIGR01771        69 VITAGAPQKPGETRL-ELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDIL----TYVAWKLSG----------FPKNR  133 (299)
T ss_pred             EECCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHH----HHHHHHHhC----------CCHHH
Confidence            999997553334454 889999999999999999987444666655421000    000000000          01122


Q ss_pred             hhHh-hHHHHHHHHHHHHHHcCCcEEEeccCceeCCC
Q 020104          167 SYAI-SKTLTERAALEFAEEHGLDLVTLIPSMVVGPF  202 (331)
Q Consensus       167 ~Y~~-~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~  202 (331)
                      ..|. +.+..-++-...++..+++..-++. .|+|..
T Consensus       134 viG~gt~LDs~R~~~~la~~l~v~~~~V~~-~v~GeH  169 (299)
T TIGR01771       134 VIGSGTVLDTARLRYLLAEKLGVDPQSVHA-YIIGEH  169 (299)
T ss_pred             EEeccchHHHHHHHHHHHHHhCcCcCeEEE-EEEecC
Confidence            3344 3344455555666666787777775 477764

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=96.93  E-value=0.0017  Score=50.90  Aligned_cols=66  Identities=21%  Similarity=0.245  Sum_probs=45.3

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      ||+|-++| .|-+|+.+++.|++.|++|++.+|++     +..+.+.   +     .+++.       .++..++++++|
T Consensus         1 m~~Ig~IG-lG~mG~~~a~~L~~~g~~v~~~d~~~-----~~~~~~~---~-----~g~~~-------~~s~~e~~~~~d   59 (163)
T PF03446_consen    1 MMKIGFIG-LGNMGSAMARNLAKAGYEVTVYDRSP-----EKAEALA---E-----AGAEV-------ADSPAEAAEQAD   59 (163)
T ss_dssp             -BEEEEE---SHHHHHHHHHHHHTTTEEEEEESSH-----HHHHHHH---H-----TTEEE-------ESSHHHHHHHBS
T ss_pred             CCEEEEEc-hHHHHHHHHHHHHhcCCeEEeeccch-----hhhhhhH---H-----hhhhh-------hhhhhhHhhccc
Confidence            57999999 69999999999999999999999987     2222222   1     12222       235677777889


Q ss_pred             EEEEecc
Q 020104           85 GVLHVAT   91 (331)
Q Consensus        85 ~Vih~a~   91 (331)
                      +||-+-.
T Consensus        60 vvi~~v~   66 (163)
T PF03446_consen   60 VVILCVP   66 (163)
T ss_dssp             EEEE-SS
T ss_pred             ceEeecc
Confidence            9986643

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=96.92  E-value=0.0042  Score=53.92  Aligned_cols=112  Identities=12%  Similarity=0.040  Sum_probs=69.4

Q ss_pred             EEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCccccc-cccCCCC-CCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            8 VCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKDLS-FLKNLPG-ASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      |.|+|+ |.+|..++..|+.+|. +|+++++++.     ...... .+..... ......+..     ..+. +.++++|
T Consensus         1 I~IIGa-G~vG~~ia~~la~~~l~eV~L~Di~e~-----~~~g~~~dl~~~~~~~~~~~~I~~-----t~d~-~~l~dAD   68 (300)
T cd01339           1 ISIIGA-GNVGATLAQLLALKELGDVVLLDIVEG-----LPQGKALDISQAAPILGSDTKVTG-----TNDY-EDIAGSD   68 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhCCCcEEEEEeCCCc-----HHHHHHHHHHHhhhhcCCCeEEEE-----cCCH-HHhCCCC
Confidence            468997 9999999999998876 9999999872     211100 0111100 001122211     0123 3478999


Q ss_pred             EEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Q 020104           85 GVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTS  132 (331)
Q Consensus        85 ~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  132 (331)
                      +||.+++.......+.. +....|+.-.+.+++.+.+...-..+|.+|
T Consensus        69 iVIit~g~p~~~~~~r~-e~~~~n~~i~~~i~~~i~~~~p~~~iIv~s  115 (300)
T cd01339          69 VVVITAGIPRKPGMSRD-DLLGTNAKIVKEVAENIKKYAPNAIVIVVT  115 (300)
T ss_pred             EEEEecCCCCCcCCCHH-HHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            99999986543333333 677788999999999888876333445444

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.92  E-value=0.0009  Score=53.52  Aligned_cols=33  Identities=24%  Similarity=0.327  Sum_probs=27.2

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      |||-|.| .||+|..++..|++.|++|++++.++
T Consensus         1 M~I~ViG-lGyvGl~~A~~lA~~G~~V~g~D~~~   33 (185)
T PF03721_consen    1 MKIAVIG-LGYVGLPLAAALAEKGHQVIGVDIDE   33 (185)
T ss_dssp             -EEEEE---STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred             CEEEEEC-CCcchHHHHHHHHhCCCEEEEEeCCh
Confidence            5899998 79999999999999999999999887

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=96.91  E-value=0.0018  Score=63.71  Aligned_cols=163  Identities=14%  Similarity=0.164  Sum_probs=104.4

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCe-EEEEecCCCCcccCCccccccccCCCCCCCcEE--EEeCCCCCCccHHHHhc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYS-VTTTVRSELDPEHRNSKDLSFLKNLPGASERLR--IFHADLSHPDGFDAAIA   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~D~~~~~~~~~~~~   81 (331)
                      -|.++|+||-|..|-.|++.|.++|.+ +++..|+.-+-.....-...+-      ..+++  +-.-|+...+.-..+++
T Consensus      1768 eksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vrrWr------~~GVqV~vsT~nitt~~ga~~Li~ 1841 (2376)
T KOG1202|consen 1768 EKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVRRWR------RRGVQVQVSTSNITTAEGARGLIE 1841 (2376)
T ss_pred             cceEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHHHHHHHHH------hcCeEEEEecccchhhhhHHHHHH
Confidence            467999999999999999999999965 5666776632222111111111      12343  33457777666666664


Q ss_pred             ------CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCCCCccc
Q 020104           82 ------GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                            .+-.|+|+|+....      ..++.. ..-+.-+.+|.+|=+..++.- ..+.||.+||.+.- -+.       
T Consensus      1842 ~s~kl~~vGGiFnLA~VLRD~LiEnQt~knFk-~va~pK~~~Ti~LD~~sRe~C~~LdyFv~FSSvscG-RGN------- 1912 (2376)
T KOG1202|consen 1842 ESNKLGPVGGIFNLAAVLRDGLIENQTPKNFK-DVAKPKYSGTINLDRVSREICPELDYFVVFSSVSCG-RGN------- 1912 (2376)
T ss_pred             HhhhcccccchhhHHHHHHhhhhcccChhHHH-hhhccceeeeeehhhhhhhhCcccceEEEEEeeccc-CCC-------
Confidence                  37899999975431      122222 344445677888887777652 36789999997642 121       


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCc
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSM  197 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~  197 (331)
                                    ...+.||.+....|+++..-.. .|+|.+.+-=|.
T Consensus      1913 --------------~GQtNYG~aNS~MERiceqRr~-~GfPG~AiQWGA 1946 (2376)
T KOG1202|consen 1913 --------------AGQTNYGLANSAMERICEQRRH-EGFPGTAIQWGA 1946 (2376)
T ss_pred             --------------CcccccchhhHHHHHHHHHhhh-cCCCcceeeeec
Confidence                          1234699999999999987543 577766665443

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.91  E-value=0.0035  Score=53.54  Aligned_cols=54  Identities=13%  Similarity=0.169  Sum_probs=45.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+++|+|.|++|.+|+.++..|++.|..|+++.|..                                  .++.+.++++
T Consensus       158 ~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t----------------------------------~~L~~~~~~a  203 (283)
T PRK14192        158 AGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT----------------------------------QNLPELVKQA  203 (283)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc----------------------------------hhHHHHhccC
Confidence            467999999999999999999999999998887643                                  1355566789


Q ss_pred             cEEEEecc
Q 020104           84 TGVLHVAT   91 (331)
Q Consensus        84 d~Vih~a~   91 (331)
                      |+||++.+
T Consensus       204 DIvI~AtG  211 (283)
T PRK14192        204 DIIVGAVG  211 (283)
T ss_pred             CEEEEccC
Confidence            99999986

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=96.90  E-value=0.0012  Score=51.19  Aligned_cols=74  Identities=14%  Similarity=0.099  Sum_probs=48.1

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .++|+|+|+ |.+|..+++.|.+.| ++|.+++|+.     +....+..  +.     +...+..+..   +..+.++++
T Consensus        19 ~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~-----~~~~~~~~--~~-----~~~~~~~~~~---~~~~~~~~~   82 (155)
T cd01065          19 GKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTL-----EKAKALAE--RF-----GELGIAIAYL---DLEELLAEA   82 (155)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCH-----HHHHHHHH--HH-----hhcccceeec---chhhccccC
Confidence            578999996 999999999999985 8899999987     22222111  11     0000111222   234447889


Q ss_pred             cEEEEecccCC
Q 020104           84 TGVLHVATPVD   94 (331)
Q Consensus        84 d~Vih~a~~~~   94 (331)
                      |+||++.....
T Consensus        83 Dvvi~~~~~~~   93 (155)
T cd01065          83 DLIINTTPVGM   93 (155)
T ss_pred             CEEEeCcCCCC
Confidence            99999986543

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.90  E-value=0.015  Score=48.30  Aligned_cols=114  Identities=18%  Similarity=0.165  Sum_probs=66.6

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCC-----------cccccccc-CCCCCCC--cEEEEeCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRN-----------SKDLSFLK-NLPGASE--RLRIFHAD   69 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~-----------~~~~~~~~-~~~~~~~--~~~~~~~D   69 (331)
                      ..+|+|.| +|-+|+++++.|+..|. ++++++.+.-...+-.           ..+.+.+. .+....+  +++.+..+
T Consensus        21 ~~~VlivG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~   99 (228)
T cd00757          21 NARVLVVG-AGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNER   99 (228)
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecce
Confidence            46899999 69999999999999995 6777765441110000           00000000 0001122  34555545


Q ss_pred             CCCCccHHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceee
Q 020104           70 LSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVF  138 (331)
Q Consensus        70 ~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~  138 (331)
                      + +.+.+.+++.++|+||.+...       +.         .-..+-++|.+.+  ..+|+.+..+.++
T Consensus       100 i-~~~~~~~~~~~~DvVi~~~d~-------~~---------~r~~l~~~~~~~~--ip~i~~g~~g~~g  149 (228)
T cd00757         100 L-DAENAEELIAGYDLVLDCTDN-------FA---------TRYLINDACVKLG--KPLVSGAVLGFEG  149 (228)
T ss_pred             e-CHHHHHHHHhCCCEEEEcCCC-------HH---------HHHHHHHHHHHcC--CCEEEEEeccCEE
Confidence            5 345567778899999976532       11         1134667788877  4788877655443

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.84  E-value=0.012  Score=44.85  Aligned_cols=110  Identities=16%  Similarity=0.185  Sum_probs=64.7

Q ss_pred             eEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccC-----------Ccccc----ccccCCCCCCCcEEEEeCCC
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHR-----------NSKDL----SFLKNLPGASERLRIFHADL   70 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~-----------~~~~~----~~~~~~~~~~~~~~~~~~D~   70 (331)
                      +|+|.|+ |-+|+++++.|...|. ++.+++.+.-...+-           ...+.    +.+.++. ..-.++.+..++
T Consensus         1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~-p~v~i~~~~~~~   78 (143)
T cd01483           1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELN-PGVNVTAVPEGI   78 (143)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHC-CCcEEEEEeeec
Confidence            5899995 9999999999999996 688887664211000           00000    1111111 112344455454


Q ss_pred             CCCccHHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEeccccee
Q 020104           71 SHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAV  137 (331)
Q Consensus        71 ~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~  137 (331)
                      .+. ...+.+.++|+||.+...                ......+.++|++.+  ..+|..++....
T Consensus        79 ~~~-~~~~~~~~~diVi~~~d~----------------~~~~~~l~~~~~~~~--i~~i~~~~~g~~  126 (143)
T cd01483          79 SED-NLDDFLDGVDLVIDAIDN----------------IAVRRALNRACKELG--IPVIDAGGLGLG  126 (143)
T ss_pred             Chh-hHHHHhcCCCEEEECCCC----------------HHHHHHHHHHHHHcC--CCEEEEcCCCcE
Confidence            433 235667889999976532                112345778888887  478877775533

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=96.83  E-value=0.0018  Score=53.42  Aligned_cols=34  Identities=29%  Similarity=0.375  Sum_probs=31.9

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      |+|.|+||+|.+|+.++..|.+.|++|.+.+|++
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~   34 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL   34 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence            4799999999999999999999999999999887

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=96.82  E-value=0.012  Score=50.85  Aligned_cols=35  Identities=17%  Similarity=0.192  Sum_probs=27.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCC-CeEEEEecC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRS   38 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~   38 (331)
                      ||.+|.|.||||++|..|++.|.++. .++..+..+
T Consensus         1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~   36 (313)
T PRK11863          1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEA   36 (313)
T ss_pred             CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecC
Confidence            45799999999999999999998876 355555443

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=96.81  E-value=0.0024  Score=54.73  Aligned_cols=73  Identities=22%  Similarity=0.352  Sum_probs=48.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      .+++++|+|+ |.+|+.++..|.+.| .+|++++|+.     +..+.+...  .... ..+.+   +.    +..+.+.+
T Consensus       122 ~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~-----~~a~~l~~~--~~~~-~~~~~---~~----~~~~~~~~  185 (278)
T PRK00258        122 KGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTV-----ERAEELAKL--FGAL-GKAEL---DL----ELQEELAD  185 (278)
T ss_pred             CCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCH-----HHHHHHHHH--hhhc-cceee---cc----cchhcccc
Confidence            3578999996 999999999999999 7999999987     332222211  1000 01111   11    23355678


Q ss_pred             ccEEEEeccc
Q 020104           83 CTGVLHVATP   92 (331)
Q Consensus        83 ~d~Vih~a~~   92 (331)
                      +|+||++...
T Consensus       186 ~DivInaTp~  195 (278)
T PRK00258        186 FDLIINATSA  195 (278)
T ss_pred             CCEEEECCcC
Confidence            9999999864

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.81  E-value=0.0086  Score=52.55  Aligned_cols=37  Identities=30%  Similarity=0.317  Sum_probs=29.8

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHH-CCCe---EEEEec
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLD-HGYS---VTTTVR   37 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~-~g~~---V~~~~r   37 (331)
                      |+...++|.|.||||++|+.|++.|.. ...+   +..+..
T Consensus         1 ~~~~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS   41 (347)
T PRK06728          1 MSEKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSS   41 (347)
T ss_pred             CCCCCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEEC
Confidence            777778999999999999999999995 5566   544543

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=96.81  E-value=0.0041  Score=56.54  Aligned_cols=36  Identities=17%  Similarity=0.143  Sum_probs=33.0

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      |+  +|+|.|+| .|++|..++..|++.|++|+++++++
T Consensus         1 m~--~~kI~VIG-lG~~G~~~A~~La~~G~~V~~~D~~~   36 (415)
T PRK11064          1 MS--FETISVIG-LGYIGLPTAAAFASRQKQVIGVDINQ   36 (415)
T ss_pred             CC--ccEEEEEC-cchhhHHHHHHHHhCCCEEEEEeCCH
Confidence            65  46899998 69999999999999999999999988

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.76  E-value=0.0017  Score=56.58  Aligned_cols=34  Identities=26%  Similarity=0.330  Sum_probs=31.4

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      .++|.|+| +|-+|+.++..|+..|++|++.++++
T Consensus         7 i~~VaVIG-aG~MG~giA~~~a~aG~~V~l~D~~~   40 (321)
T PRK07066          7 IKTFAAIG-SGVIGSGWVARALAHGLDVVAWDPAP   40 (321)
T ss_pred             CCEEEEEC-cCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            46899999 59999999999999999999999987

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=96.74  E-value=0.021  Score=47.42  Aligned_cols=36  Identities=22%  Similarity=0.279  Sum_probs=28.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCC-CeEEE-EecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHG-YSVTT-TVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~-~~r~~   39 (331)
                      +|+||.|.|++|-+|+.+++.+.+.+ .++.+ +.|.+
T Consensus         1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~   38 (266)
T COG0289           1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPG   38 (266)
T ss_pred             CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCC
Confidence            35799999999999999999999875 66554 45554

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.74  E-value=0.0027  Score=54.68  Aligned_cols=38  Identities=24%  Similarity=0.251  Sum_probs=34.6

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      |...+++|.|.|+ |.+|..++..|+..|++|+++++++
T Consensus         1 ~~~~~~~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~   38 (286)
T PRK07819          1 MSDAIQRVGVVGA-GQMGAGIAEVCARAGVDVLVFETTE   38 (286)
T ss_pred             CCCCccEEEEEcc-cHHHHHHHHHHHhCCCEEEEEECCH
Confidence            6666678999995 9999999999999999999999998

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.74  E-value=0.0065  Score=53.01  Aligned_cols=35  Identities=20%  Similarity=0.136  Sum_probs=31.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      ..|+|.|.| +|.+|+.+++.|.+.|++|.+.+|+.
T Consensus         3 ~~m~I~iiG-~G~~G~~lA~~l~~~G~~V~~~~r~~   37 (308)
T PRK14619          3 QPKTIAILG-AGAWGSTLAGLASANGHRVRVWSRRS   37 (308)
T ss_pred             CCCEEEEEC-ccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            457899998 69999999999999999999999876

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.72  E-value=0.0061  Score=56.19  Aligned_cols=78  Identities=14%  Similarity=0.058  Sum_probs=50.4

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |...+++|+|||++| +|...++.|++.|++|.+.+++..    ........+.+     .++++..+..  ..   ..+
T Consensus         1 ~~~~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~----~~~~~~~~l~~-----~g~~~~~~~~--~~---~~~   65 (447)
T PRK02472          1 TEYQNKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPF----SENPEAQELLE-----EGIKVICGSH--PL---ELL   65 (447)
T ss_pred             CCcCCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCc----cchhHHHHHHh-----cCCEEEeCCC--CH---HHh
Confidence            555678999999988 999999999999999999987652    11111122221     2445444321  11   123


Q ss_pred             c-CccEEEEecccC
Q 020104           81 A-GCTGVLHVATPV   93 (331)
Q Consensus        81 ~-~~d~Vih~a~~~   93 (331)
                      . ++|.||+.+|..
T Consensus        66 ~~~~d~vV~s~gi~   79 (447)
T PRK02472         66 DEDFDLMVKNPGIP   79 (447)
T ss_pred             cCcCCEEEECCCCC
Confidence            3 389999988754

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.68  E-value=0.0015  Score=50.87  Aligned_cols=77  Identities=17%  Similarity=0.255  Sum_probs=46.9

Q ss_pred             eEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCccEE
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTGV   86 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~V   86 (331)
                      ||.|.|| |-.|.+++..|..+|++|.+..|+.     +..+.+..-.......+++..-. .+.--.++.++++++|+|
T Consensus         1 KI~ViGa-G~~G~AlA~~la~~g~~V~l~~~~~-----~~~~~i~~~~~n~~~~~~~~l~~-~i~~t~dl~~a~~~ad~I   73 (157)
T PF01210_consen    1 KIAVIGA-GNWGTALAALLADNGHEVTLWGRDE-----EQIEEINETRQNPKYLPGIKLPE-NIKATTDLEEALEDADII   73 (157)
T ss_dssp             EEEEESS-SHHHHHHHHHHHHCTEEEEEETSCH-----HHHHHHHHHTSETTTSTTSBEET-TEEEESSHHHHHTT-SEE
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCEEEEEeccH-----HHHHHHHHhCCCCCCCCCcccCc-ccccccCHHHHhCcccEE
Confidence            6899995 9999999999999999999999987     22222222111111111111111 111124577889999999


Q ss_pred             EEec
Q 020104           87 LHVA   90 (331)
Q Consensus        87 ih~a   90 (331)
                      |-+.
T Consensus        74 iiav   77 (157)
T PF01210_consen   74 IIAV   77 (157)
T ss_dssp             EE-S
T ss_pred             Eecc
Confidence            8554

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=96.68  E-value=0.0055  Score=54.95  Aligned_cols=67  Identities=15%  Similarity=0.204  Sum_probs=52.1

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      |++|+|+|| |.+|+-++..+.+.|++|++++.++.     .... .         ---..+.+|..|.+.+.++.+.+|
T Consensus         2 ~~~igilG~-Gql~~ml~~aa~~lG~~v~~~d~~~~-----~pa~-~---------~ad~~~~~~~~D~~~l~~~a~~~d   65 (372)
T PRK06019          2 MKTIGIIGG-GQLGRMLALAAAPLGYKVIVLDPDPD-----SPAA-Q---------VADEVIVADYDDVAALRELAEQCD   65 (372)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCC-----Cchh-H---------hCceEEecCCCCHHHHHHHHhcCC
Confidence            468999996 89999999999999999999988762     1111 0         011456688889999999988999


Q ss_pred             EEE
Q 020104           85 GVL   87 (331)
Q Consensus        85 ~Vi   87 (331)
                      +|.
T Consensus        66 vit   68 (372)
T PRK06019         66 VIT   68 (372)
T ss_pred             EEE
Confidence            875

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=96.64  E-value=0.016  Score=51.22  Aligned_cols=34  Identities=29%  Similarity=0.464  Sum_probs=28.3

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSE   39 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~   39 (331)
                      +||.|+|+||++|++|++.|.+++ .++..+.++.
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~   35 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASP   35 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEECh
Confidence            479999999999999999998876 5887775443

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.61  E-value=0.0079  Score=51.18  Aligned_cols=100  Identities=16%  Similarity=0.180  Sum_probs=64.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      +++++-|+|+.| ||+--+++..+-|++|++++++..    .+.+.++.|        +.+.+..-..|++.+.++..--
T Consensus       181 pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~~~----kkeea~~~L--------GAd~fv~~~~d~d~~~~~~~~~  247 (360)
T KOG0023|consen  181 PGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTSSK----KKEEAIKSL--------GADVFVDSTEDPDIMKAIMKTT  247 (360)
T ss_pred             CCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCCch----hHHHHHHhc--------CcceeEEecCCHHHHHHHHHhh
Confidence            568999999988 999888888889999999999862    122223322        3344443344777777776656


Q ss_pred             cEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecc
Q 020104           84 TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSS  133 (331)
Q Consensus        84 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS  133 (331)
                      |.++|.+....   ..+           ...++++++..|   ++|+++-
T Consensus       248 dg~~~~v~~~a---~~~-----------~~~~~~~lk~~G---t~V~vg~  280 (360)
T KOG0023|consen  248 DGGIDTVSNLA---EHA-----------LEPLLGLLKVNG---TLVLVGL  280 (360)
T ss_pred             cCcceeeeecc---ccc-----------hHHHHHHhhcCC---EEEEEeC
Confidence            66666654321   111           124566666655   7887764

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=96.61  E-value=0.026  Score=41.74  Aligned_cols=30  Identities=27%  Similarity=0.591  Sum_probs=26.3

Q ss_pred             eEEEecCcchhHHHHHHHHHHC-CCeEEEEe
Q 020104            7 RVCVTGGTGFIASWLIMRLLDH-GYSVTTTV   36 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~   36 (331)
                      ||.|+|++|.+|..+++.|.+. ++++.++.
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~   31 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALA   31 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEE
Confidence            5889999999999999999985 78888773

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=96.61  E-value=0.0041  Score=54.71  Aligned_cols=34  Identities=26%  Similarity=0.289  Sum_probs=31.2

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      ||+|.|.| +|.+|+.++..|++.|++|.+++|++
T Consensus         1 mmkI~iiG-~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          1 MMKIAVLG-AGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            36899999 59999999999999999999999986

>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=96.60  E-value=0.025  Score=47.44  Aligned_cols=93  Identities=22%  Similarity=0.343  Sum_probs=65.7

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--Cc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--GC   83 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~   83 (331)
                      |+|||.|||+ =|+.|++.|.+.|+ |.+.+-.+      .......     ..........+-+-+.+++.+.+.  ++
T Consensus         1 m~ILvlgGTt-E~r~la~~L~~~g~-v~~sv~t~------~g~~~~~-----~~~~~~~v~~G~lg~~~~l~~~l~~~~i   67 (249)
T PF02571_consen    1 MKILVLGGTT-EGRKLAERLAEAGY-VIVSVATS------YGGELLK-----PELPGLEVRVGRLGDEEGLAEFLRENGI   67 (249)
T ss_pred             CEEEEEechH-HHHHHHHHHHhcCC-EEEEEEhh------hhHhhhc-----cccCCceEEECCCCCHHHHHHHHHhCCC
Confidence            5899999976 59999999999998 66554433      1111100     111356777888878889999985  79


Q ss_pred             cEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCcc
Q 020104           84 TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVK  126 (331)
Q Consensus        84 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~  126 (331)
                      +.||.+..++.              ..-++++.++|++.+ ++
T Consensus        68 ~~vIDATHPfA--------------~~is~na~~a~~~~~-ip   95 (249)
T PF02571_consen   68 DAVIDATHPFA--------------AEISQNAIEACRELG-IP   95 (249)
T ss_pred             cEEEECCCchH--------------HHHHHHHHHHHhhcC-cc
Confidence            99998765432              223578999999998 64

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process

>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional

Probab=96.60  E-value=0.008  Score=54.92  Aligned_cols=76  Identities=18%  Similarity=0.224  Sum_probs=53.0

Q ss_pred             CCceEEEecC----------------cchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEe
Q 020104            4 GKGRVCVTGG----------------TGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH   67 (331)
Q Consensus         4 ~~~~ilVtGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (331)
                      .+++||||+|                ||-+|.+|++++..+|.+|+++.-..      .   +       ..+.+++++.
T Consensus       255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~------~---~-------~~p~~v~~i~  318 (475)
T PRK13982        255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV------D---L-------ADPQGVKVIH  318 (475)
T ss_pred             CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc------C---C-------CCCCCceEEE
Confidence            4678999975                69999999999999999999886332      0   0       0124566655


Q ss_pred             CCCCCCccHHHHhc---CccEEEEecccCCCCC
Q 020104           68 ADLSHPDGFDAAIA---GCTGVLHVATPVDFED   97 (331)
Q Consensus        68 ~D~~~~~~~~~~~~---~~d~Vih~a~~~~~~~   97 (331)
                      .+  ...++.+++.   +.|++|++|+..++..
T Consensus       319 V~--ta~eM~~av~~~~~~Di~I~aAAVaDyrp  349 (475)
T PRK13982        319 VE--SARQMLAAVEAALPADIAIFAAAVADWRV  349 (475)
T ss_pred             ec--CHHHHHHHHHhhCCCCEEEEeccccceee
Confidence            43  4444444442   4799999999877553

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.60  E-value=0.0045  Score=53.39  Aligned_cols=35  Identities=17%  Similarity=0.181  Sum_probs=28.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCC-CeEEEEecC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRS   38 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~   38 (331)
                      +|+||.|.||+||.|..|++.|..+. .++..+..+
T Consensus         1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~   36 (349)
T COG0002           1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSR   36 (349)
T ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeech
Confidence            36799999999999999999999885 566555433

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.59  E-value=0.0094  Score=50.72  Aligned_cols=56  Identities=13%  Similarity=0.096  Sum_probs=47.3

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+++|+|+|+++.+|+.++..|.++|..|+++.+..                                  ..+.+.+.++
T Consensus       157 ~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t----------------------------------~~l~~~~~~A  202 (286)
T PRK14175        157 EGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS----------------------------------KDMASYLKDA  202 (286)
T ss_pred             CCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc----------------------------------hhHHHHHhhC
Confidence            468999999999999999999999999999887643                                  1366778889


Q ss_pred             cEEEEecccC
Q 020104           84 TGVLHVATPV   93 (331)
Q Consensus        84 d~Vih~a~~~   93 (331)
                      |+||.+.+..
T Consensus       203 DIVIsAvg~p  212 (286)
T PRK14175        203 DVIVSAVGKP  212 (286)
T ss_pred             CEEEECCCCC
Confidence            9999888754

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=96.58  E-value=0.017  Score=50.33  Aligned_cols=66  Identities=14%  Similarity=0.208  Sum_probs=49.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+++|.|.| .|-||+.+++.|...|++|++.+|...     ..             +++..+    ....++.++++++
T Consensus       135 ~g~tvgIvG-~G~IG~~vA~~l~afG~~V~~~~~~~~-----~~-------------~~~~~~----~~~~~l~e~l~~a  191 (312)
T PRK15469        135 EDFTIGILG-AGVLGSKVAQSLQTWGFPLRCWSRSRK-----SW-------------PGVQSF----AGREELSAFLSQT  191 (312)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCCC-----CC-------------CCceee----cccccHHHHHhcC
Confidence            357899999 799999999999999999999988651     10             111111    1345788999999


Q ss_pred             cEEEEeccc
Q 020104           84 TGVLHVATP   92 (331)
Q Consensus        84 d~Vih~a~~   92 (331)
                      |+|+.+...
T Consensus       192 Dvvv~~lPl  200 (312)
T PRK15469        192 RVLINLLPN  200 (312)
T ss_pred             CEEEECCCC
Confidence            999987653

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.53  E-value=0.0096  Score=50.97  Aligned_cols=56  Identities=16%  Similarity=0.074  Sum_probs=47.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+|+|.|.|.+|.+|+.++..|+++|+.|+++.|..                     +             ++.++.+.+
T Consensus       158 ~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t---------------------~-------------~l~e~~~~A  203 (301)
T PRK14194        158 TGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS---------------------T-------------DAKALCRQA  203 (301)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC---------------------C-------------CHHHHHhcC
Confidence            468999999999999999999999999999987665                     1             366777889


Q ss_pred             cEEEEecccC
Q 020104           84 TGVLHVATPV   93 (331)
Q Consensus        84 d~Vih~a~~~   93 (331)
                      |+||-+.+..
T Consensus       204 DIVIsavg~~  213 (301)
T PRK14194        204 DIVVAAVGRP  213 (301)
T ss_pred             CEEEEecCCh
Confidence            9999887753

>PRK08328 hypothetical protein; Provisional

Probab=96.52  E-value=0.034  Score=46.26  Aligned_cols=113  Identities=18%  Similarity=0.180  Sum_probs=66.8

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccCC------cccc----------ccccCCCCCCCcEEEEe
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRN------SKDL----------SFLKNLPGASERLRIFH   67 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~------~~~~----------~~~~~~~~~~~~~~~~~   67 (331)
                      ..+|+|.| +|.+|+++++.|+..| .++++++.+.....+-.      .+..          +.+.++ ...-.++.+.
T Consensus        27 ~~~VlIiG-~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~-np~v~v~~~~  104 (231)
T PRK08328         27 KAKVAVVG-VGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERF-NSDIKIETFV  104 (231)
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHh-CCCCEEEEEe
Confidence            45899999 5999999999999998 47878776542110000      0000          011111 1112344555


Q ss_pred             CCCCCCccHHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceee
Q 020104           68 ADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVF  138 (331)
Q Consensus        68 ~D~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~  138 (331)
                      ..+ +.+.+.+++++.|+||.+.-.       +.         .-..+-++|++.+  ..+|+.++.+.+|
T Consensus       105 ~~~-~~~~~~~~l~~~D~Vid~~d~-------~~---------~r~~l~~~~~~~~--ip~i~g~~~g~~G  156 (231)
T PRK08328        105 GRL-SEENIDEVLKGVDVIVDCLDN-------FE---------TRYLLDDYAHKKG--IPLVHGAVEGTYG  156 (231)
T ss_pred             ccC-CHHHHHHHHhcCCEEEECCCC-------HH---------HHHHHHHHHHHcC--CCEEEEeeccCEE
Confidence            554 345567778899999976421       11         1123456777777  4788888776665

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.51  E-value=0.0068  Score=52.12  Aligned_cols=69  Identities=17%  Similarity=0.124  Sum_probs=48.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+++++|+|. |.+|+.+++.|...|.+|++.+|+.     .....   ..+     .+...+     +.+++.+.+.++
T Consensus       150 ~gk~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R~~-----~~~~~---~~~-----~g~~~~-----~~~~l~~~l~~a  210 (287)
T TIGR02853       150 HGSNVMVLGF-GRTGMTIARTFSALGARVFVGARSS-----ADLAR---ITE-----MGLIPF-----PLNKLEEKVAEI  210 (287)
T ss_pred             CCCEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHH---HHH-----CCCeee-----cHHHHHHHhccC
Confidence            3578999996 8899999999999999999999987     22111   111     111211     234467778899


Q ss_pred             cEEEEecc
Q 020104           84 TGVLHVAT   91 (331)
Q Consensus        84 d~Vih~a~   91 (331)
                      |+||++..
T Consensus       211 DiVint~P  218 (287)
T TIGR02853       211 DIVINTIP  218 (287)
T ss_pred             CEEEECCC
Confidence            99999753

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=96.50  E-value=0.0059  Score=52.14  Aligned_cols=34  Identities=26%  Similarity=0.307  Sum_probs=31.3

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      .++++|+|+ |.+|+.++..|++.|++|.+++|+.
T Consensus       117 ~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~  150 (270)
T TIGR00507       117 NQRVLIIGA-GGAARAVALPLLKADCNVIIANRTV  150 (270)
T ss_pred             CCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            568999997 8999999999999999999999986

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=96.49  E-value=0.0044  Score=54.95  Aligned_cols=35  Identities=37%  Similarity=0.486  Sum_probs=31.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      |||+|.|.| +|.+|+.++..|.+.|++|.+++|+.
T Consensus         1 ~~mkI~IiG-~G~mG~~~A~~L~~~G~~V~~~~r~~   35 (341)
T PRK08229          1 MMARICVLG-AGSIGCYLGGRLAAAGADVTLIGRAR   35 (341)
T ss_pred             CCceEEEEC-CCHHHHHHHHHHHhcCCcEEEEecHH
Confidence            457899998 69999999999999999999999864

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=96.47  E-value=0.0043  Score=58.83  Aligned_cols=70  Identities=17%  Similarity=0.221  Sum_probs=55.0

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH-hcCcc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA-IAGCT   84 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d   84 (331)
                      .+|+|.| .|-+|+++++.|.++|++|.+++.++     +.   .+.+++     .+...+.+|..|++.++++ ++++|
T Consensus       418 ~hiiI~G-~G~~G~~la~~L~~~g~~vvvId~d~-----~~---~~~~~~-----~g~~~i~GD~~~~~~L~~a~i~~a~  483 (558)
T PRK10669        418 NHALLVG-YGRVGSLLGEKLLAAGIPLVVIETSR-----TR---VDELRE-----RGIRAVLGNAANEEIMQLAHLDCAR  483 (558)
T ss_pred             CCEEEEC-CChHHHHHHHHHHHCCCCEEEEECCH-----HH---HHHHHH-----CCCeEEEcCCCCHHHHHhcCccccC
Confidence            4689998 69999999999999999999999887     22   232222     3678999999999888765 46788


Q ss_pred             EEEEe
Q 020104           85 GVLHV   89 (331)
Q Consensus        85 ~Vih~   89 (331)
                      .|+-+
T Consensus       484 ~viv~  488 (558)
T PRK10669        484 WLLLT  488 (558)
T ss_pred             EEEEE
Confidence            77743

>PRK13243 glyoxylate reductase; Reviewed

Probab=96.47  E-value=0.0067  Score=53.41  Aligned_cols=66  Identities=11%  Similarity=0.016  Sum_probs=47.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+++|.|.| .|.||+.+++.|...|.+|.+++|...     .... .   .     .++        ...++.++++++
T Consensus       149 ~gktvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~-----~~~~-~---~-----~~~--------~~~~l~ell~~a  205 (333)
T PRK13243        149 YGKTIGIIG-FGRIGQAVARRAKGFGMRILYYSRTRK-----PEAE-K---E-----LGA--------EYRPLEELLRES  205 (333)
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCCC-----hhhH-H---H-----cCC--------EecCHHHHHhhC
Confidence            357999999 599999999999999999999988751     1100 0   0     011        123577888899


Q ss_pred             cEEEEeccc
Q 020104           84 TGVLHVATP   92 (331)
Q Consensus        84 d~Vih~a~~   92 (331)
                      |+|+.+...
T Consensus       206 DiV~l~lP~  214 (333)
T PRK13243        206 DFVSLHVPL  214 (333)
T ss_pred             CEEEEeCCC
Confidence            999987753

>PRK08655 prephenate dehydrogenase; Provisional

Probab=96.45  E-value=0.0066  Score=55.52  Aligned_cols=34  Identities=29%  Similarity=0.586  Sum_probs=32.0

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      |+|.|+||+|.+|+.+++.|.+.|++|.+++|++
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~   34 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDP   34 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            4799999999999999999999999999999987

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.41  E-value=0.0098  Score=51.44  Aligned_cols=69  Identities=20%  Similarity=0.205  Sum_probs=49.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      ..++++|+|. |.+|+.++..|...|.+|++++|++     ..   .....+.     +..++     +.+++.+.+.++
T Consensus       151 ~g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v~~r~~-----~~---~~~~~~~-----G~~~~-----~~~~l~~~l~~a  211 (296)
T PRK08306        151 HGSNVLVLGF-GRTGMTLARTLKALGANVTVGARKS-----AH---LARITEM-----GLSPF-----HLSELAEEVGKI  211 (296)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCH-----HH---HHHHHHc-----CCeee-----cHHHHHHHhCCC
Confidence            3579999995 8899999999999999999999987     22   1111111     22222     223567778899


Q ss_pred             cEEEEecc
Q 020104           84 TGVLHVAT   91 (331)
Q Consensus        84 d~Vih~a~   91 (331)
                      |+||++..
T Consensus       212 DiVI~t~p  219 (296)
T PRK08306        212 DIIFNTIP  219 (296)
T ss_pred             CEEEECCC
Confidence            99999753

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=96.41  E-value=0.015  Score=52.90  Aligned_cols=33  Identities=27%  Similarity=0.318  Sum_probs=30.6

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      |+|.|.| +|++|..++..|++.|++|+++++++
T Consensus         1 mkI~vIG-lG~~G~~lA~~La~~G~~V~~~d~~~   33 (411)
T TIGR03026         1 MKIAVIG-LGYVGLPLAALLADLGHEVTGVDIDQ   33 (411)
T ss_pred             CEEEEEC-CCchhHHHHHHHHhcCCeEEEEECCH
Confidence            3799998 69999999999999999999999987

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.40  E-value=0.0067  Score=53.45  Aligned_cols=37  Identities=30%  Similarity=0.332  Sum_probs=32.9

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      |+.+ |+|.|.| +|-+|+.++..|++.|++|.+.+|++
T Consensus         1 ~~~~-m~I~iIG-~G~mG~~ia~~L~~~G~~V~~~~r~~   37 (328)
T PRK14618          1 MHHG-MRVAVLG-AGAWGTALAVLAASKGVPVRLWARRP   37 (328)
T ss_pred             CCCC-CeEEEEC-cCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            5554 5899998 59999999999999999999999986

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=96.38  E-value=0.021  Score=44.26  Aligned_cols=57  Identities=19%  Similarity=0.230  Sum_probs=43.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+|+|+|.|.++.+|+.|+..|.++|..|..+....                                  .++.+..+.+
T Consensus        35 ~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T----------------------------------~~l~~~~~~A   80 (160)
T PF02882_consen   35 EGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT----------------------------------KNLQEITRRA   80 (160)
T ss_dssp             TT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS----------------------------------SSHHHHHTTS
T ss_pred             CCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC----------------------------------Ccccceeeec
Confidence            468999999999999999999999999998764443                                  3467788899


Q ss_pred             cEEEEecccCC
Q 020104           84 TGVLHVATPVD   94 (331)
Q Consensus        84 d~Vih~a~~~~   94 (331)
                      |+||-++|...
T Consensus        81 DIVVsa~G~~~   91 (160)
T PF02882_consen   81 DIVVSAVGKPN   91 (160)
T ss_dssp             SEEEE-SSSTT
T ss_pred             cEEeeeecccc
Confidence            99998888654

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.36  E-value=0.084  Score=44.14  Aligned_cols=113  Identities=15%  Similarity=0.104  Sum_probs=64.8

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccCCccc------c-----ccc-cCCCCCCCc--EEEEeCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNSKD------L-----SFL-KNLPGASER--LRIFHAD   69 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~------~-----~~~-~~~~~~~~~--~~~~~~D   69 (331)
                      ..+|+|.| .|.+|+++++.|+..| .++++++.+.-...+-.-+.      +     ..+ +.+....+.  ++.+...
T Consensus        24 ~~~VlvvG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~~  102 (240)
T TIGR02355        24 ASRVLIVG-LGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAK  102 (240)
T ss_pred             CCcEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEecc
Confidence            35899999 5999999999999998 47888777652211100000      0     000 000011233  3333333


Q ss_pred             CCCCccHHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEeccccee
Q 020104           70 LSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAV  137 (331)
Q Consensus        70 ~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~  137 (331)
                      + +.+.+.+++.+.|+||.+.-.       +.         .-..+-++|.+.+  ..+|+.++.+.+
T Consensus       103 i-~~~~~~~~~~~~DlVvd~~D~-------~~---------~r~~ln~~~~~~~--ip~v~~~~~g~~  151 (240)
T TIGR02355       103 L-DDAELAALIAEHDIVVDCTDN-------VE---------VRNQLNRQCFAAK--VPLVSGAAIRME  151 (240)
T ss_pred             C-CHHHHHHHhhcCCEEEEcCCC-------HH---------HHHHHHHHHHHcC--CCEEEEEecccE
Confidence            3 334567778899999976421       11         1234567788877  478876665433

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK08223 hypothetical protein; Validated

Probab=96.35  E-value=0.059  Score=45.95  Aligned_cols=113  Identities=13%  Similarity=0.166  Sum_probs=64.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccC------Cc-----ccccccc-CCCCCCCc--EEEEeCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHR------NS-----KDLSFLK-NLPGASER--LRIFHAD   69 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~------~~-----~~~~~~~-~~~~~~~~--~~~~~~D   69 (331)
                      ..+|+|.| +|.+|+++++.|+..| -++.+++.+.-...+-      ..     .+.+... .+....+.  ++.+...
T Consensus        27 ~s~VlIvG-~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~  105 (287)
T PRK08223         27 NSRVAIAG-LGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEG  105 (287)
T ss_pred             cCCEEEEC-CCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence            35899999 5999999999999998 4777777664211000      00     0000000 01112343  4444444


Q ss_pred             CCCCccHHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccc
Q 020104           70 LSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNA  135 (331)
Q Consensus        70 ~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~  135 (331)
                      +. .+...++++++|+||.+.-       ++       ++..-..+-++|.+.+  ..+|+.|...
T Consensus       106 l~-~~n~~~ll~~~DlVvD~~D-------~~-------~~~~r~~ln~~c~~~~--iP~V~~~~~g  154 (287)
T PRK08223        106 IG-KENADAFLDGVDVYVDGLD-------FF-------EFDARRLVFAACQQRG--IPALTAAPLG  154 (287)
T ss_pred             cC-ccCHHHHHhCCCEEEECCC-------CC-------cHHHHHHHHHHHHHcC--CCEEEEeccC
Confidence            43 4557788899999985431       11       0111245667888887  4778776544

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.34  E-value=0.046  Score=47.27  Aligned_cols=25  Identities=32%  Similarity=0.347  Sum_probs=22.8

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG   29 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g   29 (331)
                      +++|.|.||||.+|+.+++.|.++.
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~   25 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERH   25 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcC
Confidence            3689999999999999999999965

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=96.33  E-value=0.024  Score=52.29  Aligned_cols=34  Identities=15%  Similarity=0.243  Sum_probs=30.4

Q ss_pred             CceEEEecCcchhHHHHHHHHHHC--CCeEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDH--GYSVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~   39 (331)
                      ||+|.|.| .|++|..++..|++.  |++|++++.++
T Consensus         1 ~m~I~ViG-~GyvGl~~A~~lA~~g~g~~V~gvD~~~   36 (473)
T PLN02353          1 MVKICCIG-AGYVGGPTMAVIALKCPDIEVVVVDISV   36 (473)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence            46899998 699999999999988  48899999887

>KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism]

Probab=96.33  E-value=0.0042  Score=54.05  Aligned_cols=75  Identities=16%  Similarity=0.216  Sum_probs=56.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCc-cHHHHhc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPD-GFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~   81 (331)
                      ++++||+.| +||+.+.++..|++++ .+|++.+|..     .+.   +.+   ... .+++.+..|+.+.+ .++...+
T Consensus         1 ~~~~vlllg-sg~v~~p~~d~ls~~~dv~vtva~~~~-----~~~---~~~---~~~-~~~~av~ldv~~~~~~L~~~v~   67 (445)
T KOG0172|consen    1 TKKGVLLLG-SGFVSRPVADFLSRKKDVNVTVASRTL-----KDA---EAL---VKG-INIKAVSLDVADEELALRKEVK   67 (445)
T ss_pred             CCcceEEec-CccccchHHHHHhhcCCceEEEehhhH-----HHH---HHH---hcC-CCccceEEEccchHHHHHhhhc
Confidence            357899999 6999999999999875 5677766655     122   211   111 34889999999988 8888889


Q ss_pred             CccEEEEecc
Q 020104           82 GCTGVLHVAT   91 (331)
Q Consensus        82 ~~d~Vih~a~   91 (331)
                      ..|.|+-+..
T Consensus        68 ~~D~viSLlP   77 (445)
T KOG0172|consen   68 PLDLVISLLP   77 (445)
T ss_pred             ccceeeeecc
Confidence            9999998764

>TIGR00518 alaDH alanine dehydrogenase

Probab=96.32  E-value=0.0087  Score=53.49  Aligned_cols=74  Identities=16%  Similarity=0.135  Sum_probs=52.1

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      ..+|+|+|+ |-+|...++.|...|.+|.+++|++     +..+.   +....   .  ..+..+..+.+.+.+.+.++|
T Consensus       167 ~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~~-----~~~~~---l~~~~---g--~~v~~~~~~~~~l~~~l~~aD  232 (370)
T TIGR00518       167 PGDVTIIGG-GVVGTNAAKMANGLGATVTILDINI-----DRLRQ---LDAEF---G--GRIHTRYSNAYEIEDAVKRAD  232 (370)
T ss_pred             CceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECCH-----HHHHH---HHHhc---C--ceeEeccCCHHHHHHHHccCC
Confidence            357999986 9999999999999999999999887     22221   11110   0  112234455667888888999


Q ss_pred             EEEEeccc
Q 020104           85 GVLHVATP   92 (331)
Q Consensus        85 ~Vih~a~~   92 (331)
                      +||+++..
T Consensus       233 vVI~a~~~  240 (370)
T TIGR00518       233 LLIGAVLI  240 (370)
T ss_pred             EEEEcccc
Confidence            99998753

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=96.31  E-value=0.014  Score=51.54  Aligned_cols=75  Identities=20%  Similarity=0.094  Sum_probs=48.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh-c-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI-A-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-~-   81 (331)
                      .+++|||.||+|.+|+..++.+...+..+++++++.     +..+..+.+..         -...|..+++ +.+.+ + 
T Consensus       157 ~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~-----e~~~l~k~lGA---------d~vvdy~~~~-~~e~~kk~  221 (347)
T KOG1198|consen  157 KGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSK-----EKLELVKKLGA---------DEVVDYKDEN-VVELIKKY  221 (347)
T ss_pred             CCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEccc-----chHHHHHHcCC---------cEeecCCCHH-HHHHHHhh
Confidence            456899999999999999999888884444455555     23333333211         1224555643 44433 3 


Q ss_pred             ---CccEEEEecccC
Q 020104           82 ---GCTGVLHVATPV   93 (331)
Q Consensus        82 ---~~d~Vih~a~~~   93 (331)
                         ++|+|+.|++..
T Consensus       222 ~~~~~DvVlD~vg~~  236 (347)
T KOG1198|consen  222 TGKGVDVVLDCVGGS  236 (347)
T ss_pred             cCCCccEEEECCCCC
Confidence               599999999864

>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated

Probab=96.31  E-value=0.014  Score=52.87  Aligned_cols=71  Identities=17%  Similarity=0.123  Sum_probs=52.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      ..|+|+|+|+ |.+|..++..+.+.|++|++++.++.     .....  +       . -..+..|..|.+.+.++++  
T Consensus        11 ~~~~ilIiG~-g~~~~~~~~a~~~~G~~v~~~~~~~~-----~~~~~--~-------a-d~~~~~~~~d~~~l~~~~~~~   74 (395)
T PRK09288         11 SATRVMLLGS-GELGKEVAIEAQRLGVEVIAVDRYAN-----APAMQ--V-------A-HRSHVIDMLDGDALRAVIERE   74 (395)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCC-----CchHH--h-------h-hheEECCCCCHHHHHHHHHHh
Confidence            3568999995 89999999999999999999988762     11110  0       0 1245677888888888876  


Q ss_pred             CccEEEEec
Q 020104           82 GCTGVLHVA   90 (331)
Q Consensus        82 ~~d~Vih~a   90 (331)
                      ++|.|+-..
T Consensus        75 ~id~vi~~~   83 (395)
T PRK09288         75 KPDYIVPEI   83 (395)
T ss_pred             CCCEEEEee
Confidence            799988543

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=96.27  E-value=0.011  Score=50.94  Aligned_cols=80  Identities=11%  Similarity=0.073  Sum_probs=47.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCccccccccCCC-CCC-CcEEEEeCCCCCCccHHHHh
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKDLSFLKNLP-GAS-ERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~D~~~~~~~~~~~   80 (331)
                      ..++++|.|+ |..+++++..|...|. +|++++|+.     +..++.+.+.+.. ... ..+..  .++.+...+.+.+
T Consensus       123 ~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~-----~~~~ka~~la~~~~~~~~~~~~~--~~~~~~~~l~~~~  194 (288)
T PRK12749        123 KGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRD-----EFFDKALAFAQRVNENTDCVVTV--TDLADQQAFAEAL  194 (288)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCc-----cHHHHHHHHHHHhhhccCceEEE--echhhhhhhhhhc
Confidence            3468999997 5559999999999884 899999986     2122222222111 100 11222  2222222344556


Q ss_pred             cCccEEEEecc
Q 020104           81 AGCTGVLHVAT   91 (331)
Q Consensus        81 ~~~d~Vih~a~   91 (331)
                      .++|+|||+..
T Consensus       195 ~~aDivINaTp  205 (288)
T PRK12749        195 ASADILTNGTK  205 (288)
T ss_pred             ccCCEEEECCC
Confidence            78999999764

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=96.27  E-value=0.0089  Score=51.50  Aligned_cols=74  Identities=18%  Similarity=0.198  Sum_probs=52.1

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEe-----CCCCCCccHHHH
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH-----ADLSHPDGFDAA   79 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~D~~~~~~~~~~   79 (331)
                      +++|.|.|+ |--|++|+..|.++||+|++-+|++     +....+..-      +.+.++..     .++.-..++.++
T Consensus         1 ~~kI~ViGa-GswGTALA~~la~ng~~V~lw~r~~-----~~~~~i~~~------~~N~~yLp~i~lp~~l~at~Dl~~a   68 (329)
T COG0240           1 MMKIAVIGA-GSWGTALAKVLARNGHEVRLWGRDE-----EIVAEINET------RENPKYLPGILLPPNLKATTDLAEA   68 (329)
T ss_pred             CceEEEEcC-ChHHHHHHHHHHhcCCeeEEEecCH-----HHHHHHHhc------CcCccccCCccCCcccccccCHHHH
Confidence            368999995 9999999999999999999999988     333332221      12333332     233334578889


Q ss_pred             hcCccEEEEec
Q 020104           80 IAGCTGVLHVA   90 (331)
Q Consensus        80 ~~~~d~Vih~a   90 (331)
                      ++++|+|+-..
T Consensus        69 ~~~ad~iv~av   79 (329)
T COG0240          69 LDGADIIVIAV   79 (329)
T ss_pred             HhcCCEEEEEC
Confidence            99999998543

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.26  E-value=0.071  Score=44.77  Aligned_cols=110  Identities=19%  Similarity=0.187  Sum_probs=64.5

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccCC-----------cccc----ccccCCCCCCCcEEEEeC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRN-----------SKDL----SFLKNLPGASERLRIFHA   68 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~-----------~~~~----~~~~~~~~~~~~~~~~~~   68 (331)
                      ..+|+|.|+ |-+|+++++.|+..| .++.+++.+.-...+-.           ..+.    +.+.++. ..-+++.+..
T Consensus        32 ~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~ln-p~v~i~~~~~  109 (245)
T PRK05690         32 AARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARIN-PHIAIETINA  109 (245)
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHC-CCCEEEEEec
Confidence            468999996 999999999999998 47777776542111000           0000    1111111 1123444554


Q ss_pred             CCCCCccHHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccc
Q 020104           69 DLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNA  135 (331)
Q Consensus        69 D~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~  135 (331)
                      .+. .+.+.++++++|+||.+.-       ++.         .-..+-++|.+.+  ..+|+.++..
T Consensus       110 ~i~-~~~~~~~~~~~DiVi~~~D-------~~~---------~r~~ln~~~~~~~--ip~v~~~~~g  157 (245)
T PRK05690        110 RLD-DDELAALIAGHDLVLDCTD-------NVA---------TRNQLNRACFAAK--KPLVSGAAIR  157 (245)
T ss_pred             cCC-HHHHHHHHhcCCEEEecCC-------CHH---------HHHHHHHHHHHhC--CEEEEeeecc
Confidence            443 3456677889999997642       111         1134667777877  4777765543

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=96.24  E-value=0.085  Score=45.76  Aligned_cols=112  Identities=16%  Similarity=0.178  Sum_probs=66.9

Q ss_pred             eEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccCCc-----------cc----cccccCCCCCCCcEEEEeCCC
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNS-----------KD----LSFLKNLPGASERLRIFHADL   70 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~-----------~~----~~~~~~~~~~~~~~~~~~~D~   70 (331)
                      +|||.|+ |.+|.++++.|+..| .++.+++.+.-....-.-           .+    .+.+.++. ..-.++.+..++
T Consensus         1 kVlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lN-p~v~V~~~~~~i   78 (312)
T cd01489           1 KVLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFN-PNVKIVAYHANI   78 (312)
T ss_pred             CEEEECC-CHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHC-CCCeEEEEeccC
Confidence            5899995 999999999999998 477777765521100000           00    01111111 113455666777


Q ss_pred             CCCccHHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceee
Q 020104           71 SHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVF  138 (331)
Q Consensus        71 ~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~  138 (331)
                      .+.....+.+++.|+||.+.-.       .         ..-..+-+.|...+  ..+|..++.+.+|
T Consensus        79 ~~~~~~~~f~~~~DvVv~a~Dn-------~---------~ar~~in~~c~~~~--ip~I~~gt~G~~G  128 (312)
T cd01489          79 KDPDFNVEFFKQFDLVFNALDN-------L---------AARRHVNKMCLAAD--VPLIESGTTGFLG  128 (312)
T ss_pred             CCccchHHHHhcCCEEEECCCC-------H---------HHHHHHHHHHHHCC--CCEEEEecCccee
Confidence            6644445677899999975321       1         12234556777776  4788887766554

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.21  E-value=0.044  Score=49.24  Aligned_cols=113  Identities=17%  Similarity=0.201  Sum_probs=65.2

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCC-----------cccccccc-CCCCCCCc--EEEEeCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRN-----------SKDLSFLK-NLPGASER--LRIFHAD   69 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~-----------~~~~~~~~-~~~~~~~~--~~~~~~D   69 (331)
                      .++|+|.| +|.+|+++++.|+..|. ++.+++++.-...+-.           ..+...+. .+....+.  ++.+...
T Consensus       135 ~~~VlvvG-~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~  213 (376)
T PRK08762        135 EARVLLIG-AGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQER  213 (376)
T ss_pred             cCcEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence            46899998 58899999999999995 7888887631100000           01111100 01111233  3344434


Q ss_pred             CCCCccHHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEeccccee
Q 020104           70 LSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAV  137 (331)
Q Consensus        70 ~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~  137 (331)
                      +. .+.+.++++++|+||++...       +.         .-..+-++|.+.+  ..+|+.+....+
T Consensus       214 ~~-~~~~~~~~~~~D~Vv~~~d~-------~~---------~r~~ln~~~~~~~--ip~i~~~~~g~~  262 (376)
T PRK08762        214 VT-SDNVEALLQDVDVVVDGADN-------FP---------TRYLLNDACVKLG--KPLVYGAVFRFE  262 (376)
T ss_pred             CC-hHHHHHHHhCCCEEEECCCC-------HH---------HHHHHHHHHHHcC--CCEEEEEeccCE
Confidence            43 34566778899999987532       11         1123567788877  478888765433

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=96.20  E-value=0.0091  Score=52.23  Aligned_cols=38  Identities=29%  Similarity=0.467  Sum_probs=34.8

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      |.+++|+|+|.| +|-||+.++..|.+.|++|.++.|+.
T Consensus         1 ~~~~~m~I~IiG-~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          1 MDSETPRIGIIG-TGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             CCCcCcEEEEEC-CCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            677778999998 59999999999999999999999976

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=96.20  E-value=0.012  Score=50.94  Aligned_cols=66  Identities=17%  Similarity=0.250  Sum_probs=46.6

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      +|+|.|.| .|.+|+.+++.|++.|++|.+.+|++     ...+.   +.+     .++.       -..+..++++++|
T Consensus         2 ~~~IgviG-~G~mG~~~a~~l~~~g~~v~~~d~~~-----~~~~~---~~~-----~g~~-------~~~~~~e~~~~~d   60 (296)
T PRK11559          2 TMKVGFIG-LGIMGKPMSKNLLKAGYSLVVYDRNP-----EAVAE---VIA-----AGAE-------TASTAKAVAEQCD   60 (296)
T ss_pred             CceEEEEc-cCHHHHHHHHHHHHCCCeEEEEcCCH-----HHHHH---HHH-----CCCe-------ecCCHHHHHhcCC
Confidence            46899999 69999999999999999999998887     22221   111     1111       1134566778899


Q ss_pred             EEEEecc
Q 020104           85 GVLHVAT   91 (331)
Q Consensus        85 ~Vih~a~   91 (331)
                      +||-+..
T Consensus        61 ~vi~~vp   67 (296)
T PRK11559         61 VIITMLP   67 (296)
T ss_pred             EEEEeCC
Confidence            9997754

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.19  E-value=0.019  Score=49.25  Aligned_cols=54  Identities=15%  Similarity=0.128  Sum_probs=45.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEe-cCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTV-RSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      .+|+|.|.|.+|.+|..++..|++.|+.|++.. |..                                   ++.++.+.
T Consensus       157 ~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~-----------------------------------~l~e~~~~  201 (296)
T PRK14188        157 SGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR-----------------------------------DLPAVCRR  201 (296)
T ss_pred             CCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC-----------------------------------CHHHHHhc
Confidence            468999999999999999999999999999884 432                                   14667778


Q ss_pred             ccEEEEeccc
Q 020104           83 CTGVLHVATP   92 (331)
Q Consensus        83 ~d~Vih~a~~   92 (331)
                      +|+||-+.+.
T Consensus       202 ADIVIsavg~  211 (296)
T PRK14188        202 ADILVAAVGR  211 (296)
T ss_pred             CCEEEEecCC
Confidence            9999988764

>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]

Probab=96.19  E-value=0.042  Score=44.77  Aligned_cols=181  Identities=14%  Similarity=0.030  Sum_probs=93.9

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHC---C--CeEEEEecCCCCcccCCccccccc-cCCCCCCCcEEEEeCCCCCCc
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDH---G--YSVTTTVRSELDPEHRNSKDLSFL-KNLPGASERLRIFHADLSHPD   74 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~---g--~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~~~~   74 (331)
                      |+++ -+|+||||+|.||.+|+-.+..-   |  ..+++.-.+.+    .....++-. .++..   ..-+..-++.--.
T Consensus         1 ~~ep-irVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~----~~~~~LegV~mELqD---~a~PlL~~Vvatt   72 (332)
T KOG1496|consen    1 MKEP-IRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIP----PMMSVLEGVKMELQD---CALPLLKGVVATT   72 (332)
T ss_pred             CCCc-eEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCc----hHHHHHHHHHHHHHh---hhhhHHHhhhccc
Confidence            4443 48999999999999999988652   2  22322222221    011111100 01100   0000000111112


Q ss_pred             cHHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcC--CccEEEEecccceeecCCCCC-CcccCCC
Q 020104           75 GFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSG--TVKRVVYTSSNAAVFYNDKDV-DMMDETF  151 (331)
Q Consensus        75 ~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~-~~~~E~~  151 (331)
                      +-.+++.++|+.|-..++......... +....|+.-.+.=..+..+..  .+ +++.++-      +.... ....+..
T Consensus        73 d~~~afkdv~~ailvGa~PR~eGMERk-Dll~~NvkIfk~Qg~AL~k~A~~~~-KVlVVgN------PaNTNali~~k~A  144 (332)
T KOG1496|consen   73 DEVEAFKDVDVAILVGAMPRREGMERK-DLLSANVKIFKSQGAALEKYAKPNV-KVLVVGN------PANTNALILKKFA  144 (332)
T ss_pred             ChhhhhccCcEEEEeccccCcccchhh-hHHhhcceeehhhhHHHHHhcCCCc-eEEEecC------ccccchhHHhhhC
Confidence            334667789999988886654333333 667777665444444444331  14 5553332      21111 1122332


Q ss_pred             CCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCC
Q 020104          152 WSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICP  205 (331)
Q Consensus       152 ~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~  205 (331)
                      |        ..+-.|.-+.+++.-.+.....+.+.++++.-+.--.|+|.....
T Consensus       145 p--------sIP~kNfs~lTRLDhNRA~~QlA~klgv~~~~VkNviIWGNHSsT  190 (332)
T KOG1496|consen  145 P--------SIPEKNFSALTRLDHNRALAQLALKLGVPVSDVKNVIIWGNHSST  190 (332)
T ss_pred             C--------CCchhcchhhhhhchhhHHHHHHHhhCCchhhcceeEEecccccc
Confidence            2        122245566777776777777777778888888888888876443

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=96.19  E-value=0.2  Score=42.91  Aligned_cols=90  Identities=14%  Similarity=0.152  Sum_probs=59.4

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG--   82 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--   82 (331)
                      ..+|+|.|.||.+|+.+.+.|.+.|++ .+..-++.    ....             .    ...+.-..++.++.+.  
T Consensus         6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~----~~~~-------------~----v~G~~~y~sv~dlp~~~~   63 (286)
T TIGR01019         6 DTKVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPG----KGGT-------------T----VLGLPVFDSVKEAVEETG   63 (286)
T ss_pred             CCcEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCC----CCcc-------------e----ecCeeccCCHHHHhhccC
Confidence            468999999999999999999999988 44444440    0000             0    0122234466676665  


Q ss_pred             ccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEeccc
Q 020104           83 CTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSN  134 (331)
Q Consensus        83 ~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~  134 (331)
                      +|.++-+...                 .....+++.|.+.+ ++.+|.+|+.
T Consensus        64 ~Dlavi~vpa-----------------~~v~~~l~e~~~~G-vk~avIis~G   97 (286)
T TIGR01019        64 ANASVIFVPA-----------------PFAADAIFEAIDAG-IELIVCITEG   97 (286)
T ss_pred             CCEEEEecCH-----------------HHHHHHHHHHHHCC-CCEEEEECCC
Confidence            7988866542                 11345677777788 8888888874

ATP citrate lyases appear to form an outgroup.

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=96.16  E-value=0.018  Score=50.13  Aligned_cols=67  Identities=16%  Similarity=0.213  Sum_probs=52.3

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      |++|.|+|| |.+|+=++..-...|++|++++-+++     .....          ---..+..+..|++.++++.+++|
T Consensus         1 ~~tvgIlGG-GQLgrMm~~aa~~lG~~v~vLdp~~~-----~PA~~----------va~~~i~~~~dD~~al~ela~~~D   64 (375)
T COG0026           1 MKTVGILGG-GQLGRMMALAAARLGIKVIVLDPDAD-----APAAQ----------VADRVIVAAYDDPEALRELAAKCD   64 (375)
T ss_pred             CCeEEEEcC-cHHHHHHHHHHHhcCCEEEEecCCCC-----Cchhh----------cccceeecCCCCHHHHHHHHhhCC
Confidence            468999995 99999999999999999999987662     11110          112456677789999999999999


Q ss_pred             EEE
Q 020104           85 GVL   87 (331)
Q Consensus        85 ~Vi   87 (331)
                      +|=
T Consensus        65 ViT   67 (375)
T COG0026          65 VIT   67 (375)
T ss_pred             EEE
Confidence            985

>PRK07574 formate dehydrogenase; Provisional

Probab=96.14  E-value=0.021  Score=51.05  Aligned_cols=67  Identities=21%  Similarity=0.177  Sum_probs=47.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+|+|.|.| .|-||+.+++.|...|.+|++.+|...     ..+...   +     .+       +.-..++.++++.+
T Consensus       191 ~gktVGIvG-~G~IG~~vA~~l~~fG~~V~~~dr~~~-----~~~~~~---~-----~g-------~~~~~~l~ell~~a  249 (385)
T PRK07574        191 EGMTVGIVG-AGRIGLAVLRRLKPFDVKLHYTDRHRL-----PEEVEQ---E-----LG-------LTYHVSFDSLVSVC  249 (385)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEECCCCC-----chhhHh---h-----cC-------ceecCCHHHHhhcC
Confidence            357899999 699999999999999999999988751     111000   0     11       11124588889999


Q ss_pred             cEEEEecc
Q 020104           84 TGVLHVAT   91 (331)
Q Consensus        84 d~Vih~a~   91 (331)
                      |+|+.+..
T Consensus       250 DvV~l~lP  257 (385)
T PRK07574        250 DVVTIHCP  257 (385)
T ss_pred             CEEEEcCC
Confidence            99987765

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.14  E-value=0.012  Score=52.12  Aligned_cols=32  Identities=19%  Similarity=0.346  Sum_probs=24.8

Q ss_pred             ceEEEecCcchhHHHHHHHHHHC-CCe---EEEEec
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDH-GYS---VTTTVR   37 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~-g~~---V~~~~r   37 (331)
                      ++|.|.||||++|+.|++.|+++ ...   +..+..
T Consensus         2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss   37 (369)
T PRK06598          2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFST   37 (369)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecc
Confidence            68999999999999999966654 555   555443

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=96.14  E-value=0.011  Score=50.31  Aligned_cols=33  Identities=27%  Similarity=0.373  Sum_probs=30.9

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      ++|-++| .|-+|..++..|++.||+|.+.+|++
T Consensus         1 ~kIafIG-LG~MG~pmA~~L~~aG~~v~v~~r~~   33 (286)
T COG2084           1 MKIAFIG-LGIMGSPMAANLLKAGHEVTVYNRTP   33 (286)
T ss_pred             CeEEEEc-CchhhHHHHHHHHHCCCEEEEEeCCh
Confidence            3788888 89999999999999999999999998

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=96.13  E-value=0.034  Score=48.81  Aligned_cols=37  Identities=16%  Similarity=0.185  Sum_probs=28.3

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCC---CeEEEEecC
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHG---YSVTTTVRS   38 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~r~   38 (331)
                      |. ..++|.|.||||++|..|++.|.++.   .++..+..+
T Consensus         1 ~~-~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~   40 (336)
T PRK08040          1 MS-EGWNIALLGATGAVGEALLELLAERQFPVGELYALASE   40 (336)
T ss_pred             CC-CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEcc
Confidence            54 34689999999999999999999853   466655443

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=96.13  E-value=0.033  Score=48.94  Aligned_cols=63  Identities=17%  Similarity=0.095  Sum_probs=46.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+|+|.|.| .|.||+.+++.|...|++|++.+|+..     ...            ..+       .-..++.++++++
T Consensus       145 ~g~~VgIIG-~G~IG~~vA~~L~~~G~~V~~~d~~~~-----~~~------------~~~-------~~~~~l~ell~~a  199 (330)
T PRK12480        145 KNMTVAIIG-TGRIGAATAKIYAGFGATITAYDAYPN-----KDL------------DFL-------TYKDSVKEAIKDA  199 (330)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEeCChh-----Hhh------------hhh-------hccCCHHHHHhcC
Confidence            356899999 699999999999999999999998761     100            000       0123577889999


Q ss_pred             cEEEEecc
Q 020104           84 TGVLHVAT   91 (331)
Q Consensus        84 d~Vih~a~   91 (331)
                      |+|+-+..
T Consensus       200 DiVil~lP  207 (330)
T PRK12480        200 DIISLHVP  207 (330)
T ss_pred             CEEEEeCC
Confidence            98886654

>PRK06436 glycerate dehydrogenase; Provisional

Probab=96.13  E-value=0.039  Score=47.79  Aligned_cols=63  Identities=14%  Similarity=0.048  Sum_probs=46.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+++|.|.| .|-||+.+++.|...|.+|++.+|+..     .              .++..      -..++.++++++
T Consensus       121 ~gktvgIiG-~G~IG~~vA~~l~afG~~V~~~~r~~~-----~--------------~~~~~------~~~~l~ell~~a  174 (303)
T PRK06436        121 YNKSLGILG-YGGIGRRVALLAKAFGMNIYAYTRSYV-----N--------------DGISS------IYMEPEDIMKKS  174 (303)
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCCc-----c--------------cCccc------ccCCHHHHHhhC
Confidence            357899999 799999999988888999999988651     0              01110      023577888899


Q ss_pred             cEEEEeccc
Q 020104           84 TGVLHVATP   92 (331)
Q Consensus        84 d~Vih~a~~   92 (331)
                      |+|+.+...
T Consensus       175 Div~~~lp~  183 (303)
T PRK06436        175 DFVLISLPL  183 (303)
T ss_pred             CEEEECCCC
Confidence            999887654

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.12  E-value=0.031  Score=42.30  Aligned_cols=56  Identities=16%  Similarity=0.138  Sum_probs=46.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+++|.|.|.+.-+|..|+..|.++|..|..+.++.                                  .++++.++++
T Consensus        27 ~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t----------------------------------~~l~~~v~~A   72 (140)
T cd05212          27 DGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT----------------------------------IQLQSKVHDA   72 (140)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC----------------------------------cCHHHHHhhC
Confidence            468999999999999999999999999998876544                                  1366778889


Q ss_pred             cEEEEecccC
Q 020104           84 TGVLHVATPV   93 (331)
Q Consensus        84 d~Vih~a~~~   93 (331)
                      |+||-..+..
T Consensus        73 DIVvsAtg~~   82 (140)
T cd05212          73 DVVVVGSPKP   82 (140)
T ss_pred             CEEEEecCCC
Confidence            9999877754

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.10  E-value=0.029  Score=44.38  Aligned_cols=80  Identities=13%  Similarity=0.273  Sum_probs=48.4

Q ss_pred             eEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccC-------------Cccc-cccccCCCCCCCcEEEEeCCCC
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHR-------------NSKD-LSFLKNLPGASERLRIFHADLS   71 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~-------------~~~~-~~~~~~~~~~~~~~~~~~~D~~   71 (331)
                      +|+|.| +|-+|+++++.|+..|. ++++++.+.-...+-             +.+. .+.+.++. ..-+++.+...+.
T Consensus         1 ~VlViG-~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~ln-p~v~i~~~~~~~~   78 (174)
T cd01487           1 KVGIAG-AGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREIN-PFVKIEAINIKID   78 (174)
T ss_pred             CEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHC-CCCEEEEEEeecC
Confidence            589999 59999999999999996 588888765111000             0000 01111110 1123444444443


Q ss_pred             CCccHHHHhcCccEEEEe
Q 020104           72 HPDGFDAAIAGCTGVLHV   89 (331)
Q Consensus        72 ~~~~~~~~~~~~d~Vih~   89 (331)
                      . +.+.+.++++|+||.+
T Consensus        79 ~-~~~~~~l~~~DlVi~~   95 (174)
T cd01487          79 E-NNLEGLFGDCDIVVEA   95 (174)
T ss_pred             h-hhHHHHhcCCCEEEEC
Confidence            3 4577788899999976

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=96.10  E-value=0.035  Score=48.75  Aligned_cols=35  Identities=20%  Similarity=0.133  Sum_probs=31.6

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      +.+|||+||+|-+|..+++.+...|.+|++++++.
T Consensus       139 g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~  173 (325)
T TIGR02825       139 GETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSD  173 (325)
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            46899999999999999998888899999988876

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=96.10  E-value=0.035  Score=44.97  Aligned_cols=80  Identities=13%  Similarity=0.221  Sum_probs=50.2

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCccc-------c---------ccccCCCCCCCcEEEEe
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKD-------L---------SFLKNLPGASERLRIFH   67 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~-------~---------~~~~~~~~~~~~~~~~~   67 (331)
                      .++|+|.|+ |.+|+.++..|+..|. ++++++++.-..  +...+       .         +.+.++. ...+++.+.
T Consensus        21 ~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~--sNL~Rq~~~~~~iG~~Ka~~~~~~l~~in-p~~~i~~~~   96 (200)
T TIGR02354        21 QATVAICGL-GGLGSNVAINLARAGIGKLILVDFDVVEP--SNLNRQQYKASQVGEPKTEALKENISEIN-PYTEIEAYD   96 (200)
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCEEcc--cccccccCChhhCCCHHHHHHHHHHHHHC-CCCEEEEee
Confidence            468999995 8899999999999997 699988872100  01010       0         0011110 112445555


Q ss_pred             CCCCCCccHHHHhcCccEEEEe
Q 020104           68 ADLSHPDGFDAAIAGCTGVLHV   89 (331)
Q Consensus        68 ~D~~~~~~~~~~~~~~d~Vih~   89 (331)
                      .++. .+.+.+++.++|+||-+
T Consensus        97 ~~i~-~~~~~~~~~~~DlVi~a  117 (200)
T TIGR02354        97 EKIT-EENIDKFFKDADIVCEA  117 (200)
T ss_pred             eeCC-HhHHHHHhcCCCEEEEC
Confidence            5554 35577788899999976

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=96.10  E-value=0.041  Score=47.44  Aligned_cols=29  Identities=17%  Similarity=0.243  Sum_probs=24.8

Q ss_pred             eEEEecCcchhHHHHHHHHHHCC-CeEEEE
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHG-YSVTTT   35 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g-~~V~~~   35 (331)
                      ||.|.|||||.|..|++.|+.+. .++..+
T Consensus         3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l   32 (310)
T TIGR01851         3 KVFIDGEAGTTGLQIRERLSGRDDIELLSI   32 (310)
T ss_pred             eEEEECCCChhHHHHHHHHhCCCCeEEEEE
Confidence            79999999999999999999875 455554

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.10  E-value=0.04  Score=48.56  Aligned_cols=116  Identities=18%  Similarity=0.181  Sum_probs=67.0

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccC--CCCCCCcEE-EEeCC-----CCCCccHH
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKN--LPGASERLR-IFHAD-----LSHPDGFD   77 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~D-----~~~~~~~~   77 (331)
                      |||-|.| |||+|......|++.||+|++++.+.        .+.+.+..  .|-..++++ +++-+     +.--.+.+
T Consensus         1 MkI~viG-tGYVGLv~g~~lA~~GHeVv~vDid~--------~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~   71 (414)
T COG1004           1 MKITVIG-TGYVGLVTGACLAELGHEVVCVDIDE--------SKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYE   71 (414)
T ss_pred             CceEEEC-CchHHHHHHHHHHHcCCeEEEEeCCH--------HHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHH
Confidence            5899999 89999999999999999999999987        23333221  111112222 11111     11123567


Q ss_pred             HHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEeccccee
Q 020104           78 AAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAV  137 (331)
Q Consensus        78 ~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~  137 (331)
                      ++++..|++|-+.+.....  +.     ..++.....+++...+.-.-.++|.+=|+-..
T Consensus        72 ~a~~~adv~fIavgTP~~~--dg-----~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPv  124 (414)
T COG1004          72 EAVKDADVVFIAVGTPPDE--DG-----SADLSYVEAVAKDIGEILDGKAVVVIKSTVPV  124 (414)
T ss_pred             HHHhcCCEEEEEcCCCCCC--CC-----CccHHHHHHHHHHHHhhcCCCeEEEEcCCCCC
Confidence            7888899999887753321  11     12233444555555544312255555554333

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.09  E-value=0.054  Score=44.38  Aligned_cols=112  Identities=18%  Similarity=0.303  Sum_probs=63.9

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcc--cCC--------cccc----ccccCCCCCCCcEEEEeCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPE--HRN--------SKDL----SFLKNLPGASERLRIFHAD   69 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~--~~~--------~~~~----~~~~~~~~~~~~~~~~~~D   69 (331)
                      ..+|+|.| +|-+|+++++.|...|. ++++++.+.-...  ...        ..+.    +.+.++ ...-+++.+...
T Consensus        28 ~~~V~ViG-~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~l-np~v~v~~~~~~  105 (212)
T PRK08644         28 KAKVGIAG-AGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEI-NPFVEIEAHNEK  105 (212)
T ss_pred             CCCEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHH-CCCCEEEEEeee
Confidence            45899999 59999999999999995 5888887741100  000        0000    011111 011234444444


Q ss_pred             CCCCccHHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhc-CCccEEEEeccccee
Q 020104           70 LSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKS-GTVKRVVYTSSNAAV  137 (331)
Q Consensus        70 ~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~  137 (331)
                      +.+ +.+.+.++++|+||.+.-       ++.         .-..+.+.|.+. +  ..+|+.+...-+
T Consensus       106 i~~-~~~~~~~~~~DvVI~a~D-------~~~---------~r~~l~~~~~~~~~--~p~I~~~~~~~~  155 (212)
T PRK08644        106 IDE-DNIEELFKDCDIVVEAFD-------NAE---------TKAMLVETVLEHPG--KKLVAASGMAGY  155 (212)
T ss_pred             cCH-HHHHHHHcCCCEEEECCC-------CHH---------HHHHHHHHHHHhCC--CCEEEeehhhcc
Confidence            443 456677889999997631       111         123455677776 5  477777654333

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=96.08  E-value=0.0096  Score=55.51  Aligned_cols=34  Identities=21%  Similarity=0.174  Sum_probs=31.3

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      .|+|.|+| +|.+|+.++..|+..|++|++.++++
T Consensus         4 i~kIavIG-~G~MG~~iA~~la~~G~~V~v~D~~~   37 (495)
T PRK07531          4 IMKAACIG-GGVIGGGWAARFLLAGIDVAVFDPHP   37 (495)
T ss_pred             cCEEEEEC-cCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            35899998 69999999999999999999999987

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=96.08  E-value=0.014  Score=50.84  Aligned_cols=38  Identities=29%  Similarity=0.364  Sum_probs=32.9

Q ss_pred             CCCCC-ceEEEecCcchhHHHHHHHHHHCCC--eEEEEecCC
Q 020104            1 MEEGK-GRVCVTGGTGFIASWLIMRLLDHGY--SVTTTVRSE   39 (331)
Q Consensus         1 M~~~~-~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~   39 (331)
                      |++++ ++|.|+| +|.+|..++..|.+.|+  +|++++|++
T Consensus         1 ~~~~~~~~I~IIG-~G~mG~sla~~l~~~g~~~~V~~~dr~~   41 (307)
T PRK07502          1 MSAPLFDRVALIG-IGLIGSSLARAIRRLGLAGEIVGADRSA   41 (307)
T ss_pred             CCccCCcEEEEEe-eCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence            66654 7899998 79999999999999884  899999987

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=96.08  E-value=0.016  Score=39.21  Aligned_cols=32  Identities=47%  Similarity=0.591  Sum_probs=29.8

Q ss_pred             eEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      +|+|.|| |++|-.++..|.+.|.+|+++.|++
T Consensus         1 ~vvViGg-G~ig~E~A~~l~~~g~~vtli~~~~   32 (80)
T PF00070_consen    1 RVVVIGG-GFIGIELAEALAELGKEVTLIERSD   32 (80)
T ss_dssp             EEEEESS-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHhCcEEEEEeccc
Confidence            5888895 9999999999999999999999988

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK08818 prephenate dehydrogenase; Provisional

Probab=96.07  E-value=0.028  Score=50.02  Aligned_cols=34  Identities=21%  Similarity=0.275  Sum_probs=29.9

Q ss_pred             ceEEEecCcchhHHHHHHHHHHC-CCeEEEEecCC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDH-GYSVTTTVRSE   39 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~   39 (331)
                      ++|.|.|.+|.||+.+++.|.+. +++|+++++..
T Consensus         5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d   39 (370)
T PRK08818          5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPAD   39 (370)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence            58999999999999999999975 78998887753

>PF08732 HIM1: HIM1; InterPro: IPR014843 HIM1 (high induction of mutagenesis protein 1) plays a role in the control of spontaneous and induced mutagenesis []

Probab=96.01  E-value=0.013  Score=51.27  Aligned_cols=99  Identities=16%  Similarity=0.086  Sum_probs=62.7

Q ss_pred             CccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCcccCCCCCChhh
Q 020104           82 GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDY  157 (331)
Q Consensus        82 ~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~  157 (331)
                      +++.+|.+-|...............+.......|++...    +.+ .+++|.++|.....                   
T Consensus       203 ~i~t~is~LGsts~~a~~s~~~~~~IDy~Lnl~laq~f~~~~~~~~-~K~~vIvTSfn~~~-------------------  262 (410)
T PF08732_consen  203 DIKTMISTLGSTSAQAKSSKAARHKIDYQLNLDLAQTFANDIKNTG-NKKLVIVTSFNNNA-------------------  262 (410)
T ss_pred             hhhhheecCCCChhhccccccchhhccccccHHHHHHhhhhhccCC-CceEEEEEecCcch-------------------
Confidence            356778777765533222111222344444555555555    566 78999999943221                   


Q ss_pred             hhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCC
Q 020104          158 IRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFIC  204 (331)
Q Consensus       158 ~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~  204 (331)
                          .....+|-..|...|+-+.....-.--..+|||||.+.|....
T Consensus       263 ----~s~~f~Yfk~K~~LE~dl~~~l~~~l~~lvILRPGplvG~h~~  305 (410)
T PF08732_consen  263 ----ISSMFPYFKTKGELENDLQNLLPPKLKHLVILRPGPLVGEHGS  305 (410)
T ss_pred             ----hhhhhhhhHHHHHHHHHHHhhcccccceEEEecCccccCCCCC
Confidence                1123479999999999998764311237899999999998655

It is thought to participate in the control of processing of mutational intermediates appearing during error-prone bypass of DNA damage.

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=95.99  E-value=0.048  Score=47.95  Aligned_cols=35  Identities=29%  Similarity=0.228  Sum_probs=30.0

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      ..+|||+||+|-+|+..++.+...|+.+++++.++
T Consensus       143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~  177 (326)
T COG0604         143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSS  177 (326)
T ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCH
Confidence            56899999999999999999999997766666655

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.98  E-value=0.012  Score=51.47  Aligned_cols=37  Identities=19%  Similarity=0.230  Sum_probs=32.6

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      |+. .++|.|.| +|.+|..++..|++.|++|++++++.
T Consensus         1 ~~~-~~~I~vIG-aG~mG~~iA~~l~~~g~~V~~~d~~~   37 (311)
T PRK06130          1 MNP-IQNLAIIG-AGTMGSGIAALFARKGLQVVLIDVME   37 (311)
T ss_pred             CCC-ccEEEEEC-CCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            544 46899998 59999999999999999999999877

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=95.98  E-value=0.01  Score=41.84  Aligned_cols=67  Identities=22%  Similarity=0.295  Sum_probs=43.6

Q ss_pred             eEEEecCcchhHHHHHHHHHHCC---CeEEEE-ecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHG---YSVTTT-VRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g---~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      ||.|+| +|.+|+.|++.|++.|   ++|.+. .|++     +....+..  +.     .+....      .+..+++++
T Consensus         1 kI~iIG-~G~mg~al~~~l~~~g~~~~~v~~~~~r~~-----~~~~~~~~--~~-----~~~~~~------~~~~~~~~~   61 (96)
T PF03807_consen    1 KIGIIG-AGNMGSALARGLLASGIKPHEVIIVSSRSP-----EKAAELAK--EY-----GVQATA------DDNEEAAQE   61 (96)
T ss_dssp             EEEEES-TSHHHHHHHHHHHHTTS-GGEEEEEEESSH-----HHHHHHHH--HC-----TTEEES------EEHHHHHHH
T ss_pred             CEEEEC-CCHHHHHHHHHHHHCCCCceeEEeeccCcH-----HHHHHHHH--hh-----cccccc------CChHHhhcc
Confidence            577886 7999999999999999   999955 8877     22222221  11     112211      245677778


Q ss_pred             ccEEEEeccc
Q 020104           83 CTGVLHVATP   92 (331)
Q Consensus        83 ~d~Vih~a~~   92 (331)
                      .|+||-+.-+
T Consensus        62 advvilav~p   71 (96)
T PF03807_consen   62 ADVVILAVKP   71 (96)
T ss_dssp             TSEEEE-S-G
T ss_pred             CCEEEEEECH
Confidence            9999977543

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.97  E-value=0.0091  Score=51.53  Aligned_cols=34  Identities=29%  Similarity=0.393  Sum_probs=31.2

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      .++|.|+| +|.+|..++..|++.|++|++++++.
T Consensus         3 ~~kIaViG-aG~mG~~iA~~la~~G~~V~l~d~~~   36 (287)
T PRK08293          3 IKNVTVAG-AGVLGSQIAFQTAFHGFDVTIYDISD   36 (287)
T ss_pred             ccEEEEEC-CCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            36899999 59999999999999999999999987

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.94  E-value=0.0095  Score=51.43  Aligned_cols=33  Identities=15%  Similarity=0.272  Sum_probs=31.0

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      ++|.|.|+ |.+|..++..|++.|++|++.++++
T Consensus         2 ~~V~VIG~-G~mG~~iA~~la~~G~~V~~~d~~~   34 (288)
T PRK09260          2 EKLVVVGA-GVMGRGIAYVFAVSGFQTTLVDIKQ   34 (288)
T ss_pred             cEEEEECc-cHHHHHHHHHHHhCCCcEEEEeCCH
Confidence            58999996 9999999999999999999999987

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=95.91  E-value=0.024  Score=51.05  Aligned_cols=32  Identities=13%  Similarity=0.153  Sum_probs=27.8

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      |+|.|.| +|++|..++..|+ .||+|++++++.
T Consensus         1 mkI~VIG-lGyvGl~~A~~lA-~G~~VigvD~d~   32 (388)
T PRK15057          1 MKITISG-TGYVGLSNGLLIA-QNHEVVALDILP   32 (388)
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-hCCcEEEEECCH
Confidence            3799998 7999999996665 599999999988

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.91  E-value=0.15  Score=45.46  Aligned_cols=111  Identities=13%  Similarity=0.045  Sum_probs=65.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCc-----------cc----cccccCCCCCCCc--EEEE
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNS-----------KD----LSFLKNLPGASER--LRIF   66 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~-----------~~----~~~~~~~~~~~~~--~~~~   66 (331)
                      ..+|+|.| +|.+|+++++.|+..|. ++.+++.+.-...+-.-           .+    .+.+.+   ..+.  ++.+
T Consensus        28 ~~~VlivG-~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~---~np~v~v~~~  103 (355)
T PRK05597         28 DAKVAVIG-AGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLA---LNPDVKVTVS  103 (355)
T ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHH---HCCCcEEEEE
Confidence            46899999 59999999999999984 78877776521100000           00    011111   1233  4444


Q ss_pred             eCCCCCCccHHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceee
Q 020104           67 HADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVF  138 (331)
Q Consensus        67 ~~D~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~  138 (331)
                      ...+. .+...++++++|+||.+.-.       ..         .-..+-++|.+.+  ..+|+.++.+.++
T Consensus       104 ~~~i~-~~~~~~~~~~~DvVvd~~d~-------~~---------~r~~~n~~c~~~~--ip~v~~~~~g~~g  156 (355)
T PRK05597        104 VRRLT-WSNALDELRDADVILDGSDN-------FD---------TRHLASWAAARLG--IPHVWASILGFDA  156 (355)
T ss_pred             EeecC-HHHHHHHHhCCCEEEECCCC-------HH---------HHHHHHHHHHHcC--CCEEEEEEecCeE
Confidence            44553 34566778899999976421       11         1123556777777  4788877655443

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.90  E-value=0.018  Score=49.08  Aligned_cols=35  Identities=26%  Similarity=0.254  Sum_probs=31.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCC---CeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHG---YSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~   39 (331)
                      |||+|.|+| +|.+|+.+++.|.+.|   ++|.+++|++
T Consensus         1 ~mm~I~iIG-~G~mG~~la~~l~~~g~~~~~v~v~~r~~   38 (267)
T PRK11880          1 MMKKIGFIG-GGNMASAIIGGLLASGVPAKDIIVSDPSP   38 (267)
T ss_pred             CCCEEEEEe-chHHHHHHHHHHHhCCCCcceEEEEcCCH
Confidence            367899999 5999999999999988   7899999987

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=95.89  E-value=0.04  Score=46.65  Aligned_cols=100  Identities=15%  Similarity=0.110  Sum_probs=64.0

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh----
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI----   80 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~----   80 (331)
                      +.+|+|+||+|-+|+-..+-..-+|++|+++.=++        ++.+.+.+.-+....     .|..+. ++.+.+    
T Consensus       151 GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~--------eK~~~l~~~lGfD~~-----idyk~~-d~~~~L~~a~  216 (340)
T COG2130         151 GETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGA--------EKCDFLTEELGFDAG-----IDYKAE-DFAQALKEAC  216 (340)
T ss_pred             CCEEEEEecccccchHHHHHHHhhCCeEEEecCCH--------HHHHHHHHhcCCcee-----eecCcc-cHHHHHHHHC
Confidence            56899999999999988887777899999998776        455555442111112     233333 344444    


Q ss_pred             -cCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceee
Q 020104           81 -AGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVF  138 (331)
Q Consensus        81 -~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~  138 (331)
                       .++|+.|-|.|-          ..++       .++..+..   -.|++.|+-++.|.
T Consensus       217 P~GIDvyfeNVGg----------~v~D-------Av~~~ln~---~aRi~~CG~IS~YN  255 (340)
T COG2130         217 PKGIDVYFENVGG----------EVLD-------AVLPLLNL---FARIPVCGAISQYN  255 (340)
T ss_pred             CCCeEEEEEcCCc----------hHHH-------HHHHhhcc---ccceeeeeehhhcC
Confidence             379999988763          2222       23333333   34889998888784

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=95.87  E-value=0.017  Score=50.68  Aligned_cols=35  Identities=29%  Similarity=0.222  Sum_probs=32.3

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      ..+++|+||+|.+|..+++.+...|.+|+++++++
T Consensus       163 ~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~  197 (332)
T cd08259         163 GDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSP  197 (332)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCH
Confidence            46899999999999999999999999999998876

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=95.86  E-value=0.016  Score=52.51  Aligned_cols=74  Identities=8%  Similarity=0.115  Sum_probs=51.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      .+++|+|.|+ |-+|+.++++|.+.| .+++++.|+.     +....+...  .    ....     ....+++.+.+..
T Consensus       180 ~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~-----~ra~~La~~--~----~~~~-----~~~~~~l~~~l~~  242 (414)
T PRK13940        180 SSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTI-----EKAQKITSA--F----RNAS-----AHYLSELPQLIKK  242 (414)
T ss_pred             cCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCH-----HHHHHHHHH--h----cCCe-----EecHHHHHHHhcc
Confidence            4578999995 999999999999998 4799999987     232222211  1    1111     2223456778889


Q ss_pred             ccEEEEecccCC
Q 020104           83 CTGVLHVATPVD   94 (331)
Q Consensus        83 ~d~Vih~a~~~~   94 (331)
                      +|+||++.+...
T Consensus       243 aDiVI~aT~a~~  254 (414)
T PRK13940        243 ADIIIAAVNVLE  254 (414)
T ss_pred             CCEEEECcCCCC
Confidence            999999987644

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=95.83  E-value=0.022  Score=49.41  Aligned_cols=65  Identities=17%  Similarity=0.170  Sum_probs=46.1

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCccE
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTG   85 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~   85 (331)
                      ++|.|+| .|.+|..+++.|++.|++|.+.+|++     +..+.+.   +.     ++       ....+..++++++|+
T Consensus         2 ~~Ig~IG-lG~mG~~mA~~l~~~G~~V~v~d~~~-----~~~~~~~---~~-----g~-------~~~~s~~~~~~~aDv   60 (296)
T PRK15461          2 AAIAFIG-LGQMGSPMASNLLKQGHQLQVFDVNP-----QAVDALV---DK-----GA-------TPAASPAQAAAGAEF   60 (296)
T ss_pred             CeEEEEe-eCHHHHHHHHHHHHCCCeEEEEcCCH-----HHHHHHH---Hc-----CC-------cccCCHHHHHhcCCE
Confidence            4899998 79999999999999999999999987     2222211   11     11       112345667778899


Q ss_pred             EEEecc
Q 020104           86 VLHVAT   91 (331)
Q Consensus        86 Vih~a~   91 (331)
                      ||-+..
T Consensus        61 Vi~~vp   66 (296)
T PRK15461         61 VITMLP   66 (296)
T ss_pred             EEEecC
Confidence            887654

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.82  E-value=0.041  Score=46.81  Aligned_cols=57  Identities=14%  Similarity=0.127  Sum_probs=47.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+++|+|+|.+..+|+.|+..|+++|..|+++.+..                                  .++.+..+++
T Consensus       158 ~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T----------------------------------~~l~~~~~~A  203 (285)
T PRK10792        158 YGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT----------------------------------KNLRHHVRNA  203 (285)
T ss_pred             CCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC----------------------------------CCHHHHHhhC
Confidence            468999999999999999999999999998876544                                  1367778889


Q ss_pred             cEEEEecccCC
Q 020104           84 TGVLHVATPVD   94 (331)
Q Consensus        84 d~Vih~a~~~~   94 (331)
                      |+||.++|...
T Consensus       204 DIvi~avG~p~  214 (285)
T PRK10792        204 DLLVVAVGKPG  214 (285)
T ss_pred             CEEEEcCCCcc
Confidence            99999887543

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=95.81  E-value=0.02  Score=49.12  Aligned_cols=33  Identities=27%  Similarity=0.352  Sum_probs=30.5

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      |+|.|.| +|.+|+.++..|.+.|++|.+++|++
T Consensus         1 m~I~IIG-~G~mG~sla~~L~~~g~~V~~~d~~~   33 (279)
T PRK07417          1 MKIGIVG-LGLIGGSLGLDLRSLGHTVYGVSRRE   33 (279)
T ss_pred             CeEEEEe-ecHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3799998 79999999999999999999999886

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=95.80  E-value=0.016  Score=55.37  Aligned_cols=70  Identities=13%  Similarity=0.213  Sum_probs=56.0

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH-hcCcc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA-IAGCT   84 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d   84 (331)
                      ++|+|.| .|-+|+.+++.|.++|+++.+++.++        +..+.+.+     .+...+.||.++++.++++ ++++|
T Consensus       401 ~~vII~G-~Gr~G~~va~~L~~~g~~vvvID~d~--------~~v~~~~~-----~g~~v~~GDat~~~~L~~agi~~A~  466 (601)
T PRK03659        401 PQVIIVG-FGRFGQVIGRLLMANKMRITVLERDI--------SAVNLMRK-----YGYKVYYGDATQLELLRAAGAEKAE  466 (601)
T ss_pred             CCEEEec-CchHHHHHHHHHHhCCCCEEEEECCH--------HHHHHHHh-----CCCeEEEeeCCCHHHHHhcCCccCC
Confidence            5789998 69999999999999999999999988        22332222     3678899999999888776 46889


Q ss_pred             EEEEe
Q 020104           85 GVLHV   89 (331)
Q Consensus        85 ~Vih~   89 (331)
                      .||-+
T Consensus       467 ~vv~~  471 (601)
T PRK03659        467 AIVIT  471 (601)
T ss_pred             EEEEE
Confidence            88854

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.77  E-value=0.038  Score=47.03  Aligned_cols=56  Identities=18%  Similarity=0.166  Sum_probs=45.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+++|+|.|.++.+|+.|+..|.++|..|+++....                                  .++.+.++.+
T Consensus       157 ~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t----------------------------------~~l~~~~~~A  202 (285)
T PRK14189        157 RGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT----------------------------------RDLAAHTRQA  202 (285)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC----------------------------------CCHHHHhhhC
Confidence            468999999999999999999999999998764332                                  2366778889


Q ss_pred             cEEEEecccC
Q 020104           84 TGVLHVATPV   93 (331)
Q Consensus        84 d~Vih~a~~~   93 (331)
                      |+||-+++..
T Consensus       203 DIVV~avG~~  212 (285)
T PRK14189        203 DIVVAAVGKR  212 (285)
T ss_pred             CEEEEcCCCc
Confidence            9999888743

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=95.76  E-value=0.018  Score=55.19  Aligned_cols=70  Identities=20%  Similarity=0.278  Sum_probs=55.5

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH-hcCcc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA-IAGCT   84 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d   84 (331)
                      ++|+|.| .|-+|+.+++.|.++|+++++++.++     +.   .+.+.+     .+...+.||.+|++-++++ +++++
T Consensus       401 ~~vII~G-~Gr~G~~va~~L~~~g~~vvvID~d~-----~~---v~~~~~-----~g~~v~~GDat~~~~L~~agi~~A~  466 (621)
T PRK03562        401 PRVIIAG-FGRFGQIVGRLLLSSGVKMTVLDHDP-----DH---IETLRK-----FGMKVFYGDATRMDLLESAGAAKAE  466 (621)
T ss_pred             CcEEEEe-cChHHHHHHHHHHhCCCCEEEEECCH-----HH---HHHHHh-----cCCeEEEEeCCCHHHHHhcCCCcCC
Confidence            5799999 59999999999999999999999888     22   222222     3678899999999877765 46789


Q ss_pred             EEEEe
Q 020104           85 GVLHV   89 (331)
Q Consensus        85 ~Vih~   89 (331)
                      .||-+
T Consensus       467 ~vvv~  471 (621)
T PRK03562        467 VLINA  471 (621)
T ss_pred             EEEEE
Confidence            88854

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=95.75  E-value=0.019  Score=51.96  Aligned_cols=66  Identities=17%  Similarity=0.123  Sum_probs=46.3

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+++|+|+| .|.||+.+++.|...|.+|+++.+++.     ......   .     .+++..        .+.++++++
T Consensus       211 ~Gk~VlViG-~G~IG~~vA~~lr~~Ga~ViV~d~dp~-----ra~~A~---~-----~G~~v~--------~l~eal~~a  268 (425)
T PRK05476        211 AGKVVVVAG-YGDVGKGCAQRLRGLGARVIVTEVDPI-----CALQAA---M-----DGFRVM--------TMEEAAELG  268 (425)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEcCCch-----hhHHHH---h-----cCCEec--------CHHHHHhCC
Confidence            357899999 599999999999999999999988872     111100   0     122211        245677899


Q ss_pred             cEEEEecc
Q 020104           84 TGVLHVAT   91 (331)
Q Consensus        84 d~Vih~a~   91 (331)
                      |+||.+.+
T Consensus       269 DVVI~aTG  276 (425)
T PRK05476        269 DIFVTATG  276 (425)
T ss_pred             CEEEECCC
Confidence            99997654

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.70  E-value=0.038  Score=47.04  Aligned_cols=57  Identities=16%  Similarity=0.126  Sum_probs=46.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+|+|.|.|.+|.+|..|+..|+++|+.|++. .+.                     .            ..+++..+.+
T Consensus       157 ~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~-~s~---------------------t------------~~l~~~~~~A  202 (284)
T PRK14179        157 EGKHAVVIGRSNIVGKPMAQLLLDKNATVTLT-HSR---------------------T------------RNLAEVARKA  202 (284)
T ss_pred             CCCEEEEECCCCcCcHHHHHHHHHCCCEEEEE-CCC---------------------C------------CCHHHHHhhC
Confidence            46899999999999999999999999999887 222                     0            1366777889


Q ss_pred             cEEEEecccCC
Q 020104           84 TGVLHVATPVD   94 (331)
Q Consensus        84 d~Vih~a~~~~   94 (331)
                      |+||-+.+...
T Consensus       203 DIVI~avg~~~  213 (284)
T PRK14179        203 DILVVAIGRGH  213 (284)
T ss_pred             CEEEEecCccc
Confidence            99998887543

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=95.69  E-value=0.073  Score=45.42  Aligned_cols=72  Identities=22%  Similarity=0.267  Sum_probs=44.1

Q ss_pred             CCCC-CceEEEecCcchhHHHHHHHHHHC--CCeEEEE-ecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccH
Q 020104            1 MEEG-KGRVCVTGGTGFIASWLIMRLLDH--GYSVTTT-VRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGF   76 (331)
Q Consensus         1 M~~~-~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~   76 (331)
                      |++| +++|.|.| +|.||+.+++.|.+.  +++|.++ +|++     +..+....  ..     +.      ..-..++
T Consensus         1 ~~~m~~irIGIIG-~G~IG~~~a~~L~~~~~~~el~aV~dr~~-----~~a~~~a~--~~-----g~------~~~~~~~   61 (271)
T PRK13302          1 MSSRPELRVAIAG-LGAIGKAIAQALDRGLPGLTLSAVAVRDP-----QRHADFIW--GL-----RR------PPPVVPL   61 (271)
T ss_pred             CCCCCeeEEEEEC-ccHHHHHHHHHHHhcCCCeEEEEEECCCH-----HHHHHHHH--hc-----CC------CcccCCH
Confidence            5543 36899999 799999999999873  6787644 5554     22111110  00     00      0012346


Q ss_pred             HHHhcCccEEEEecc
Q 020104           77 DAAIAGCTGVLHVAT   91 (331)
Q Consensus        77 ~~~~~~~d~Vih~a~   91 (331)
                      .+++.++|+|+-+++
T Consensus        62 eell~~~D~Vvi~tp   76 (271)
T PRK13302         62 DQLATHADIVVEAAP   76 (271)
T ss_pred             HHHhcCCCEEEECCC
Confidence            666778999998875

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=95.67  E-value=0.049  Score=42.25  Aligned_cols=32  Identities=34%  Similarity=0.305  Sum_probs=29.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEe
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTV   36 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~   36 (331)
                      .+++|+|.|| |-+|...++.|++.|++|++++
T Consensus        12 ~~~~vlVvGG-G~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719         12 HNKVVVIIGG-GKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEc
Confidence            4678999996 9999999999999999999884

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=95.65  E-value=0.11  Score=44.04  Aligned_cols=110  Identities=18%  Similarity=0.339  Sum_probs=62.8

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccCCc------c-----ccccccC-CCCCCCcEEEEe-CCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNS------K-----DLSFLKN-LPGASERLRIFH-ADL   70 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~------~-----~~~~~~~-~~~~~~~~~~~~-~D~   70 (331)
                      ..+|+|.| .|.+|+++++.|+..| .++++++.+.-...+-.-      +     +.+.+.+ +....+.+++.. -+.
T Consensus        30 ~s~VlVvG-~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~~  108 (268)
T PRK15116         30 DAHICVVG-IGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDF  108 (268)
T ss_pred             CCCEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEecc
Confidence            46899999 5999999999999999 688888876421111000      0     0000000 111223333322 233


Q ss_pred             CCCccHHHHhc-CccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecc
Q 020104           71 SHPDGFDAAIA-GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSS  133 (331)
Q Consensus        71 ~~~~~~~~~~~-~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS  133 (331)
                      .+++...+++. ++|+||.+....                ..-..|.++|++.+ + .+|.+++
T Consensus       109 i~~e~~~~ll~~~~D~VIdaiD~~----------------~~k~~L~~~c~~~~-i-p~I~~gG  154 (268)
T PRK15116        109 ITPDNVAEYMSAGFSYVIDAIDSV----------------RPKAALIAYCRRNK-I-PLVTTGG  154 (268)
T ss_pred             cChhhHHHHhcCCCCEEEEcCCCH----------------HHHHHHHHHHHHcC-C-CEEEECC
Confidence            34555666664 699999765421                11235778888877 4 6665544

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=95.65  E-value=0.03  Score=49.50  Aligned_cols=35  Identities=17%  Similarity=0.142  Sum_probs=31.9

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      +.+|+|+||+|.+|..+++.+...|.+|++++++.
T Consensus       152 g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~  186 (338)
T cd08295         152 GETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSD  186 (338)
T ss_pred             CCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            46899999999999999998888999999988876

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=95.64  E-value=0.075  Score=47.55  Aligned_cols=63  Identities=13%  Similarity=0.180  Sum_probs=45.3

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+++|.|.| .|.||+.+++.|...|.+|.+.++...     ...            ..        ....++.++++++
T Consensus       115 ~gktvGIIG-~G~IG~~va~~l~a~G~~V~~~Dp~~~-----~~~------------~~--------~~~~~l~ell~~a  168 (381)
T PRK00257        115 AERTYGVVG-AGHVGGRLVRVLRGLGWKVLVCDPPRQ-----EAE------------GD--------GDFVSLERILEEC  168 (381)
T ss_pred             CcCEEEEEC-CCHHHHHHHHHHHHCCCEEEEECCccc-----ccc------------cC--------ccccCHHHHHhhC
Confidence            457899999 699999999999999999999876431     000            00        1123577888888


Q ss_pred             cEEEEeccc
Q 020104           84 TGVLHVATP   92 (331)
Q Consensus        84 d~Vih~a~~   92 (331)
                      |+|+.+...
T Consensus       169 DiV~lh~Pl  177 (381)
T PRK00257        169 DVISLHTPL  177 (381)
T ss_pred             CEEEEeCcC
Confidence            987766543

>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2

Probab=95.63  E-value=0.037  Score=49.88  Aligned_cols=68  Identities=16%  Similarity=0.150  Sum_probs=51.1

Q ss_pred             eEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--Ccc
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--GCT   84 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d   84 (331)
                      ||+|+| +|.+|..+++.+.+.|++|++++.++.     .... ..        . -+.+..|..|.+.+.++++  ++|
T Consensus         1 kililG-~g~~~~~l~~aa~~~G~~v~~~d~~~~-----~~~~-~~--------a-d~~~~~~~~d~~~l~~~~~~~~id   64 (380)
T TIGR01142         1 RVLLLG-SGELGKEVAIEAQRLGVEVIAVDRYAN-----APAM-QV--------A-HRSYVINMLDGDALRAVIEREKPD   64 (380)
T ss_pred             CEEEEC-CCHHHHHHHHHHHHcCCEEEEEeCCCC-----Cchh-hh--------C-ceEEEcCCCCHHHHHHHHHHhCCC
Confidence            689999 599999999999999999999988762     1111 00        1 1445678888888888876  799


Q ss_pred             EEEEec
Q 020104           85 GVLHVA   90 (331)
Q Consensus        85 ~Vih~a   90 (331)
                      .|+...
T Consensus        65 ~v~~~~   70 (380)
T TIGR01142        65 YIVPEI   70 (380)
T ss_pred             EEEecc
Confidence            998644

This enzyme is an alternative to PurN (TIGR00639)

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=95.63  E-value=0.025  Score=48.58  Aligned_cols=73  Identities=22%  Similarity=0.187  Sum_probs=47.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .++|+|.|+ |..|++++..|.+.|. +|++++|+.     ++.+.+...  +....+...+..     .+++.+.++++
T Consensus       127 ~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~-----~ka~~la~~--l~~~~~~~~~~~-----~~~~~~~~~~a  193 (284)
T PRK12549        127 LERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDP-----ARAAALADE--LNARFPAARATA-----GSDLAAALAAA  193 (284)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCH-----HHHHHHHHH--HHhhCCCeEEEe-----ccchHhhhCCC
Confidence            468999995 8899999999999996 799999987     333332211  101111222222     12345566789


Q ss_pred             cEEEEec
Q 020104           84 TGVLHVA   90 (331)
Q Consensus        84 d~Vih~a   90 (331)
                      |+||++.
T Consensus       194 DiVInaT  200 (284)
T PRK12549        194 DGLVHAT  200 (284)
T ss_pred             CEEEECC
Confidence            9999995

>PLN03139 formate dehydrogenase; Provisional

Probab=95.61  E-value=0.052  Score=48.58  Aligned_cols=67  Identities=18%  Similarity=0.216  Sum_probs=47.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+|+|.|.| .|-||+.+++.|...|.+|.+.+|..     ...+...   +     .++.       -.+++.++++.+
T Consensus       198 ~gktVGIVG-~G~IG~~vA~~L~afG~~V~~~d~~~-----~~~~~~~---~-----~g~~-------~~~~l~ell~~s  256 (386)
T PLN03139        198 EGKTVGTVG-AGRIGRLLLQRLKPFNCNLLYHDRLK-----MDPELEK---E-----TGAK-------FEEDLDAMLPKC  256 (386)
T ss_pred             CCCEEEEEe-ecHHHHHHHHHHHHCCCEEEEECCCC-----cchhhHh---h-----cCce-------ecCCHHHHHhhC
Confidence            457899999 79999999999999999999988764     1111100   0     1111       123588888899


Q ss_pred             cEEEEecc
Q 020104           84 TGVLHVAT   91 (331)
Q Consensus        84 d~Vih~a~   91 (331)
                      |+|+.+..
T Consensus       257 DvV~l~lP  264 (386)
T PLN03139        257 DVVVINTP  264 (386)
T ss_pred             CEEEEeCC
Confidence            99987654

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=95.61  E-value=0.084  Score=46.03  Aligned_cols=63  Identities=16%  Similarity=0.075  Sum_probs=46.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+|++.|.| .|-||+.+++.+..-|.+|.+++|...     . ..           ..+        ...++.++++.+
T Consensus       144 ~gktvGIiG-~G~IG~~vA~~~~~fgm~V~~~d~~~~-----~-~~-----------~~~--------~~~~l~ell~~s  197 (311)
T PRK08410        144 KGKKWGIIG-LGTIGKRVAKIAQAFGAKVVYYSTSGK-----N-KN-----------EEY--------ERVSLEELLKTS  197 (311)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHhhcCCEEEEECCCcc-----c-cc-----------cCc--------eeecHHHHhhcC
Confidence            457899999 799999999999999999999987541     0 00           111        123578888888


Q ss_pred             cEEEEeccc
Q 020104           84 TGVLHVATP   92 (331)
Q Consensus        84 d~Vih~a~~   92 (331)
                      |+|+-+...
T Consensus       198 Dvv~lh~Pl  206 (311)
T PRK08410        198 DIISIHAPL  206 (311)
T ss_pred             CEEEEeCCC
Confidence            988766643

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=95.59  E-value=0.021  Score=49.90  Aligned_cols=71  Identities=17%  Similarity=0.175  Sum_probs=48.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      ..++|+|.|+ |-+|..+++.|.+.| .+|++++|++     +....+..  ++     +...+     +.+++.+.+.+
T Consensus       177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~-----~ra~~la~--~~-----g~~~~-----~~~~~~~~l~~  238 (311)
T cd05213         177 KGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTY-----ERAEELAK--EL-----GGNAV-----PLDELLELLNE  238 (311)
T ss_pred             cCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCH-----HHHHHHHH--Hc-----CCeEE-----eHHHHHHHHhc
Confidence            3578999996 999999999999866 7899999987     22222111  11     11111     22356677788


Q ss_pred             ccEEEEeccc
Q 020104           83 CTGVLHVATP   92 (331)
Q Consensus        83 ~d~Vih~a~~   92 (331)
                      +|+||.+.+.
T Consensus       239 aDvVi~at~~  248 (311)
T cd05213         239 ADVVISATGA  248 (311)
T ss_pred             CCEEEECCCC
Confidence            9999988764

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=95.58  E-value=0.037  Score=48.12  Aligned_cols=33  Identities=24%  Similarity=0.331  Sum_probs=30.4

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      |+|.|.|+ |-+|+.++..|.+.|++|.+++|+.
T Consensus         1 m~I~IiG~-G~~G~~~a~~L~~~g~~V~~~~r~~   33 (304)
T PRK06522          1 MKIAILGA-GAIGGLFGAALAQAGHDVTLVARRG   33 (304)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCh
Confidence            47999995 9999999999999999999999976

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.57  E-value=0.094  Score=48.69  Aligned_cols=35  Identities=20%  Similarity=0.056  Sum_probs=31.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      ...+|+|+|+ |-+|...+..+...|.+|+++++++
T Consensus       164 pg~kVlViGa-G~iGL~Ai~~Ak~lGA~V~a~D~~~  198 (509)
T PRK09424        164 PPAKVLVIGA-GVAGLAAIGAAGSLGAIVRAFDTRP  198 (509)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3568999995 9999999999999999999999987

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=95.57  E-value=0.022  Score=49.39  Aligned_cols=33  Identities=15%  Similarity=0.232  Sum_probs=30.6

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      |+|.|+| .|.+|+.+++.|.+.|++|.+.+|++
T Consensus         1 M~Ig~IG-lG~mG~~la~~L~~~g~~V~~~dr~~   33 (298)
T TIGR00872         1 MQLGLIG-LGRMGANIVRRLAKRGHDCVGYDHDQ   33 (298)
T ss_pred             CEEEEEc-chHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3799999 69999999999999999999999987

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PLN02928 oxidoreductase family protein

Probab=95.57  E-value=0.056  Score=47.91  Aligned_cols=79  Identities=19%  Similarity=0.103  Sum_probs=50.3

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .++++.|.| .|-||+.+++.|...|.+|++++|+..     .... ..+. .+.  ..+..+........++.++++++
T Consensus       158 ~gktvGIiG-~G~IG~~vA~~l~afG~~V~~~dr~~~-----~~~~-~~~~-~~~--~~~~~~~~~~~~~~~L~ell~~a  227 (347)
T PLN02928        158 FGKTVFILG-YGAIGIELAKRLRPFGVKLLATRRSWT-----SEPE-DGLL-IPN--GDVDDLVDEKGGHEDIYEFAGEA  227 (347)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHhhCCCEEEEECCCCC-----hhhh-hhhc-ccc--ccccccccccCcccCHHHHHhhC
Confidence            357999999 699999999999999999999988641     1000 0000 000  01111110111345788999999


Q ss_pred             cEEEEeccc
Q 020104           84 TGVLHVATP   92 (331)
Q Consensus        84 d~Vih~a~~   92 (331)
                      |+|+.+...
T Consensus       228 DiVvl~lPl  236 (347)
T PLN02928        228 DIVVLCCTL  236 (347)
T ss_pred             CEEEECCCC
Confidence            999987753

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=95.56  E-value=0.3  Score=40.62  Aligned_cols=112  Identities=12%  Similarity=0.106  Sum_probs=64.7

Q ss_pred             eEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCc------c-----c----cccccCCCCCCCcEEEEeCCC
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNS------K-----D----LSFLKNLPGASERLRIFHADL   70 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~------~-----~----~~~~~~~~~~~~~~~~~~~D~   70 (331)
                      +|+|.| .|.+|.++++.|+..|. ++.+++.+.-...+-.-      +     +    .+.+.++. ..-+++.+..++
T Consensus         1 kVlvvG-~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~n-p~v~i~~~~~~i   78 (234)
T cd01484           1 KVLLVG-AGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRN-PNCKVVPYQNKV   78 (234)
T ss_pred             CEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHC-CCCEEEEEeccC
Confidence            589999 69999999999999984 67777776421100000      0     0    00011110 113455666677


Q ss_pred             CCCccH-HHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceee
Q 020104           71 SHPDGF-DAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVF  138 (331)
Q Consensus        71 ~~~~~~-~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~  138 (331)
                      .+...+ .+.++++|+||.+.-       +         ...-..+-+.|.+.+  ..+|..++.+-.|
T Consensus        79 ~~~~~~~~~f~~~~DvVi~a~D-------n---------~~aR~~ln~~c~~~~--iplI~~g~~G~~G  129 (234)
T cd01484          79 GPEQDFNDTFFEQFHIIVNALD-------N---------IIARRYVNGMLIFLI--VPLIESGTEGFKG  129 (234)
T ss_pred             ChhhhchHHHHhCCCEEEECCC-------C---------HHHHHHHHHHHHHcC--CCEEEEcccCCce
Confidence            543333 356788999997532       1         112345666777776  4788877755443

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.55  E-value=0.057  Score=45.96  Aligned_cols=57  Identities=9%  Similarity=0.067  Sum_probs=46.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+++|+|+|.+..+|+.|+..|.++|..|+++....                                  .++.+..+++
T Consensus       163 ~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T----------------------------------~~l~~~~~~A  208 (287)
T PRK14176        163 EGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT----------------------------------DDLKKYTLDA  208 (287)
T ss_pred             CCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC----------------------------------CCHHHHHhhC
Confidence            468999999999999999999999999998775443                                  1356677889


Q ss_pred             cEEEEecccCC
Q 020104           84 TGVLHVATPVD   94 (331)
Q Consensus        84 d~Vih~a~~~~   94 (331)
                      |+||.++|...
T Consensus       209 DIvv~AvG~p~  219 (287)
T PRK14176        209 DILVVATGVKH  219 (287)
T ss_pred             CEEEEccCCcc
Confidence            99999888644

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=95.47  E-value=0.029  Score=48.20  Aligned_cols=75  Identities=17%  Similarity=0.051  Sum_probs=47.8

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .++++|.|+ |..|+.++..|.+.|. +|+++.|+.     ++.+.+...  +.. ...+.  .  +...+++...+.++
T Consensus       125 ~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt~-----~ka~~La~~--~~~-~~~~~--~--~~~~~~~~~~~~~~  191 (282)
T TIGR01809       125 GFRGLVIGA-GGTSRAAVYALASLGVTDITVINRNP-----DKLSRLVDL--GVQ-VGVIT--R--LEGDSGGLAIEKAA  191 (282)
T ss_pred             CceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCCH-----HHHHHHHHH--hhh-cCcce--e--ccchhhhhhcccCC
Confidence            568999995 9999999999999995 799999987     333333211  100 01111  1  11112344555789


Q ss_pred             cEEEEeccc
Q 020104           84 TGVLHVATP   92 (331)
Q Consensus        84 d~Vih~a~~   92 (331)
                      |+|||+...
T Consensus       192 DiVInaTp~  200 (282)
T TIGR01809       192 EVLVSTVPA  200 (282)
T ss_pred             CEEEECCCC
Confidence            999998764

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.47  E-value=0.071  Score=43.31  Aligned_cols=35  Identities=26%  Similarity=0.381  Sum_probs=31.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      .+++|+|.|| |-+|...++.|++.|++|+++.+..
T Consensus         9 ~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~~~   43 (202)
T PRK06718          9 SNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISPEL   43 (202)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            4689999996 9999999999999999999987643

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=95.47  E-value=0.057  Score=49.26  Aligned_cols=34  Identities=12%  Similarity=0.195  Sum_probs=30.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      .+|+|-|.| .|++|..++..|++ +|+|+++++++
T Consensus         5 ~~mkI~vIG-lGyvGlpmA~~la~-~~~V~g~D~~~   38 (425)
T PRK15182          5 DEVKIAIIG-LGYVGLPLAVEFGK-SRQVVGFDVNK   38 (425)
T ss_pred             CCCeEEEEC-cCcchHHHHHHHhc-CCEEEEEeCCH
Confidence            346899998 79999999999776 69999999998

>PRK06849 hypothetical protein; Provisional

Probab=95.46  E-value=0.028  Score=50.83  Aligned_cols=38  Identities=24%  Similarity=0.161  Sum_probs=34.0

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      |.+ +|+|||||+...+|..+++.|.+.|++|++++.++
T Consensus         1 ~~~-~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~   38 (389)
T PRK06849          1 MNT-KKTVLITGARAPAALELARLFHNAGHTVILADSLK   38 (389)
T ss_pred             CCC-CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            444 57999999999999999999999999999998876

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=95.46  E-value=0.15  Score=45.20  Aligned_cols=26  Identities=23%  Similarity=0.470  Sum_probs=22.5

Q ss_pred             ceEEEecCcchhHHHHHHHHH-HCCCe
Q 020104            6 GRVCVTGGTGFIASWLIMRLL-DHGYS   31 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~-~~g~~   31 (331)
                      |+|.|.||||.+|+.+++.|. +.++.
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp   27 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFD   27 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCc
Confidence            479999999999999999999 55554

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=95.44  E-value=0.029  Score=48.49  Aligned_cols=66  Identities=18%  Similarity=0.157  Sum_probs=47.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      ..++|.|+| .|-+|+.+++.|...|++|++..|..     ...+...   .     .+++.        .++.++++.+
T Consensus        15 kgKtVGIIG-~GsIG~amA~nL~d~G~~ViV~~r~~-----~s~~~A~---~-----~G~~v--------~sl~Eaak~A   72 (335)
T PRK13403         15 QGKTVAVIG-YGSQGHAQAQNLRDSGVEVVVGVRPG-----KSFEVAK---A-----DGFEV--------MSVSEAVRTA   72 (335)
T ss_pred             CcCEEEEEe-EcHHHHHHHHHHHHCcCEEEEEECcc-----hhhHHHH---H-----cCCEE--------CCHHHHHhcC
Confidence            357899999 79999999999999999999887654     1111110   0     12221        2578889999


Q ss_pred             cEEEEecc
Q 020104           84 TGVLHVAT   91 (331)
Q Consensus        84 d~Vih~a~   91 (331)
                      |+|+.+..
T Consensus        73 DVV~llLP   80 (335)
T PRK13403         73 QVVQMLLP   80 (335)
T ss_pred             CEEEEeCC
Confidence            99998764

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=95.41  E-value=0.026  Score=51.38  Aligned_cols=71  Identities=15%  Similarity=0.198  Sum_probs=49.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      ..++|+|+|+ |-+|..+++.|...| .+|++++|+.     .....+..  .+     +...+     +.+++.+.+.+
T Consensus       179 ~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~-----~ra~~la~--~~-----g~~~i-----~~~~l~~~l~~  240 (417)
T TIGR01035       179 KGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTY-----ERAEDLAK--EL-----GGEAV-----KFEDLEEYLAE  240 (417)
T ss_pred             cCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCH-----HHHHHHHH--Hc-----CCeEe-----eHHHHHHHHhh
Confidence            3578999995 999999999999999 7899999987     22221111  11     11111     22356677889


Q ss_pred             ccEEEEeccc
Q 020104           83 CTGVLHVATP   92 (331)
Q Consensus        83 ~d~Vih~a~~   92 (331)
                      +|+||.+.+.
T Consensus       241 aDvVi~aT~s  250 (417)
T TIGR01035       241 ADIVISSTGA  250 (417)
T ss_pred             CCEEEECCCC
Confidence            9999998654

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=95.41  E-value=0.11  Score=41.30  Aligned_cols=78  Identities=9%  Similarity=0.033  Sum_probs=51.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCC-CccHHHHhcC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSH-PDGFDAAIAG   82 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~   82 (331)
                      .+|+|+|.|-+.-+|+.|+..|+++|..|+++..+..           +++...   ...........| ...+.+.++.
T Consensus        61 ~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~-----------~~~~~~---~~~~hs~t~~~~~~~~l~~~~~~  126 (197)
T cd01079          61 YGKTITIINRSEVVGRPLAALLANDGARVYSVDINGI-----------QVFTRG---ESIRHEKHHVTDEEAMTLDCLSQ  126 (197)
T ss_pred             CCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcc-----------cccccc---cccccccccccchhhHHHHHhhh
Confidence            4689999999999999999999999999998865441           000000   000000111112 1237778889


Q ss_pred             ccEEEEecccCCC
Q 020104           83 CTGVLHVATPVDF   95 (331)
Q Consensus        83 ~d~Vih~a~~~~~   95 (331)
                      +|+||-+.|...+
T Consensus       127 ADIVIsAvG~~~~  139 (197)
T cd01079         127 SDVVITGVPSPNY  139 (197)
T ss_pred             CCEEEEccCCCCC
Confidence            9999988886553

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	331
2p4h_X	322	Crystal Structure Of Vestitone Reductase From Alfal		1e-112
2c29_D	337	Structure Of Dihydroflavonol Reductase From Vitis V		9e-80
2rh8_A	338	Structure Of Apo Anthocyanidin Reductase From Vitis		5e-67
1y1p_A	342	X-Ray Structure Of Aldehyde Reductase With Nadph Le		2e-17
1ujm_A	342	Crystal Structure Of Aldehyde Reductase 2 From Spor		6e-17
1r6d_A	337	Crystal Structure Of Desiv Double Mutant (Dtdp-Gluc		4e-05
1r66_A	337	Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydr		5e-05

>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa (Medicago Sativa L.) Length = 322

Iteration: 1
 Score =  400 bits (1029), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 190/327 (58%), Positives = 249/327 (76%), Gaps = 5/327 (1%)
Query: 5   KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLR 64
           KGRVCVTGGTGF+ SW+I  LL++GYSV TT+R+  DPE +  +D+SFL NLPGASE+L 
Sbjct: 1   KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRA--DPERK--RDVSFLTNLPGASEKLH 56
Query: 65  IFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGT 124
            F+ADLS+PD F AAI GC G+ H A+P+DF   EPEE++T+R ++G LGILK+C+ S T
Sbjct: 57  FFNADLSNPDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKT 116
Query: 125 VKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAE 184
           VKR +YTSS +AV +N KD D++DE+ WSDVD +R +  +G +YA+SKTL E+A LEF E
Sbjct: 117 VKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGE 176
Query: 185 EHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHI 244
           ++G+D+VTLI   +VG F+CPK   S+  +L L+LG +E+ G +    MVHVDDVARAHI
Sbjct: 177 QNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIG-VTRFHMVHVDDVARAHI 235
Query: 245 FLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSSKKLL 304
           +LLE     GRY CS   + I+EM++ LSAKYPEY I TVD L EI+G R P  ++KKL+
Sbjct: 236 YLLENSVPGGRYNCSPFIVPIEEMSQLLSAKYPEYQILTVDELKEIKGARLPDLNTKKLV 295
Query: 305 DAGFRYNYGIDEMFDEAIQCCKEKGYL 331
           DAGF + Y I++MFD+AIQCCKEKGYL
Sbjct: 296 DAGFDFKYTIEDMFDDAIQCCKEKGYL 322

>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera At 1.8 A. Length = 337

Iteration: 1
 Score =  293 bits (750), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 152/330 (46%), Positives = 210/330 (63%), Gaps = 18/330 (5%)
Query: 8   VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH 67
           VCVTG +GFI SWL+MRLL+ GY+V  TVR   DP   N K +  L +LP A   L ++ 
Sbjct: 8   VCVTGASGFIGSWLVMRLLERGYTVRATVR---DP--TNVKKVKHLLDLPKAETHLTLWK 62
Query: 68  ADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKR 127
           ADL+    FD AI GCTGV HVATP+DFE K+PE  + +  I G LGI+KSC  + TV+R
Sbjct: 63  ADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRR 122
Query: 128 VVYTSSNAAVFYNDKDVDMMDETFWSDVDYIR--KLDSWGKSYAISKTLTERAALEFAEE 185
           +V+TSS   V   +  + + DE+ WSD+++ R  K+ +W   Y +SKTL E+AA ++A+E
Sbjct: 123 LVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAW--MYFVSKTLAEQAAWKYAKE 180
Query: 186 HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIF 245
           + +D +T+IP++VVGPFI      S+ ++L+ I GN   Y  +     VH+DD+  AHI+
Sbjct: 181 NNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIY 240
Query: 246 LLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPT----VDSLAEIEGYRAPGSSSK 301
           L E P A+GRYICSSH   I ++A+ L  KYPEY IPT    VD     E  ++   SSK
Sbjct: 241 LFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVD-----ENLKSVCFSSK 295
Query: 302 KLLDAGFRYNYGIDEMFDEAIQCCKEKGYL 331
           KL D GF + Y +++MF  A+  C+ KG L
Sbjct: 296 KLTDLGFEFKYSLEDMFTGAVDTCRAKGLL 325

>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis Vinifera Length = 338

Iteration: 1
 Score =  251 bits (640), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 143/343 (41%), Positives = 208/343 (60%), Gaps = 29/343 (8%)
Query: 4   GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERL 63
           GK   CV GGTGF+AS L+  LL  GY+V TTVR   DP+  N K +S L  L    + L
Sbjct: 8   GKKTACVVGGTGFVASLLVKLLLQKGYAVNTTVR---DPD--NQKKVSHLLELQELGD-L 61
Query: 64  RIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSG 123
           +IF ADL+    F+A IAGC  V HVATPV F  ++PE  + + AI G + ++K+C ++ 
Sbjct: 62  KIFRADLTDELSFEAPIAGCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAK 121
Query: 124 TVKRVVYTSSNAAVFYNDKDVD--MMDETFWSDVDYIR--KLDSWGKSYAISKTLTERAA 179
           +VKRV+ TSS AAV  N  D    ++DE  W+D++++   K  +WG  Y  SKTL E+AA
Sbjct: 122 SVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWG--YPASKTLAEKAA 179
Query: 180 LEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLN--------- 230
            +FAEE+ +DL+T+IP+++ G  +      S+  +++LI GN     FL+N         
Sbjct: 180 WKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNE----FLINGMKGMQMLS 235
Query: 231 --TSMVHVDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLA 288
              S+ HV+DV RAHIF+ E   A GRYIC +   ++ E+A+FLS +YP+Y +PT     
Sbjct: 236 GSVSIAHVEDVCRAHIFVAEKESASGRYICCAANTSVPELAKFLSKRYPQYKVPT--DFG 293
Query: 289 EIEGYRAPGSSSKKLLDAGFRYNYGIDEMFDEAIQCCKEKGYL 331
           +         SS+KL+  GF + YGI+E++DE+++  K KG L
Sbjct: 294 DFPPKSKLIISSEKLVKEGFSFKYGIEEIYDESVEYFKAKGLL 336

>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph Length = 342

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 121/265 (45%), Gaps = 23/265 (8%)
Query: 8   VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH 67
           V VTG  GF+AS ++ +LL+HGY V  T RS     +   +   +    PG  E   +  
Sbjct: 14  VLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKR---WDAKYPGRFETAVV-- 68
Query: 68  ADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKR 127
            D+     +D  I G  GV H+A+ V F +K  +EV+T  AI GTL  L++   + +VKR
Sbjct: 69  EDMLKQGAYDEVIKGAAGVAHIASVVSFSNKY-DEVVTP-AIGGTLNALRAAAATPSVKR 126
Query: 128 VVYTSSNAAVFYNDKDVD--MMDETFWSDVDYIRKLDSWGKS--------YAISKTLTER 177
            V TSS  +      +V+   +DE  W +++ I K  +  +S        YA SKT  E 
Sbjct: 127 FVLTSSTVSALIPKPNVEGIYLDEKSW-NLESIDKAKTLPESDPQKSLWVYAASKTEAEL 185
Query: 178 AALEFAEEHG--LDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE---EYGFLLNTS 232
           AA +F +E+     L  ++P+  +G    P+      S   + L N E       +    
Sbjct: 186 AAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQY 245
Query: 233 MVHVDDVARAHIFLLEYPDAKGRYI 257
            V   D+   H+  L  P  + R +
Sbjct: 246 YVSAVDIGLLHLGCLVLPQIERRRV 270

>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From Sporobolomyces Salmonicolor Aku4429 Length = 342

Iteration: 1
 Score = 84.7 bits (208), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 111/235 (47%), Gaps = 33/235 (14%)
Query: 8   VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH 67
           V VTG  GF+AS ++ +LL+HGY V  T RS     +   +   +    PG  E   +  
Sbjct: 14  VLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKR---WDAKYPGRFETAVV-- 68
Query: 68  ADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKR 127
            D      +D  I G  GV H+A+ V F +K  +EV+T  AI GTL  L++   + +VKR
Sbjct: 69  EDXLKQGAYDEVIKGAAGVAHIASVVSFSNKY-DEVVTP-AIGGTLNALRAAAATPSVKR 126
Query: 128 VVYTSSNAAVFYNDKDVD--MMDETFWSDVDYIRKLDSWGKS--------YAISKTLTER 177
            V TSS  +      +V+   +DE  W +++ I K  +  +S        YA SKT  E 
Sbjct: 127 FVLTSSTVSALIPKPNVEGIYLDEKSW-NLESIDKAKTLPESDPQKSLWVYAASKTEAEL 185
Query: 178 AALEFAEEHG--LDLVTLIPSMVVGPFICPK-------------FAGSVRSSLAL 217
           AA +F +E+     L  ++P+  +G    P+             F G V  +LAL
Sbjct: 186 AAWKFXDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWXXSLFNGEVSPALAL 240

>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose 4,6- Dehydratase) From Streptomyces Venezuelae With Nad And Dau Bound Length = 337

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 105/279 (37%), Gaps = 36/279 (12%)
Query: 7   RVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKDLSFLKNLPG-----AS 60
           R+ VTGG GFI S  + +LL   Y  V       LD        L++  N        A 
Sbjct: 2   RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLD-------SLTYAGNRANLAPVDAD 54
Query: 61  ERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDK-EPEEVITQRAINGTLGILKSC 119
            RLR  H D+         + G   ++H A     +       V T+  + GT  +L+  
Sbjct: 55  PRLRFVHGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCA 114
Query: 120 LKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAA 179
           + +G V RVV+ S+N            +D   W++   +         YA SK  ++  A
Sbjct: 115 VDAG-VGRVVHVSTNQV-------YGSIDSGSWTESSPLEP----NSPYAASKAGSDLVA 162
Query: 180 LEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNT-SMVHVDD 238
             +   +GLD+         GP+  P+    +  +  L  G    YG   N    VH DD
Sbjct: 163 RAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDD 222
Query: 239 VARAHIFLLEYPDAKGR-----YICSSHTLTIQEMAEFL 272
             R    +L    A GR     +I     LT +E+   L
Sbjct: 223 HCRGIALVL----AGGRAGEIYHIGGGLELTNRELTGIL 257

>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase) From Streptomyces Venezuelae With Nad And Tyd Bound Length = 337

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 106/279 (37%), Gaps = 36/279 (12%)
Query: 7   RVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKDLSFLKNLPG-----AS 60
           R+ VTGG GFI S  + +LL   Y  V       LD        L++  N        A 
Sbjct: 2   RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLD-------SLTYAGNRANLAPVDAD 54
Query: 61  ERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDK-EPEEVITQRAINGTLGILKSC 119
            RLR  H D+         + G   ++H A     +       V T+  + GT  +L+  
Sbjct: 55  PRLRFVHGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCA 114
Query: 120 LKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAA 179
           + +G V RVV+ S+       D+    +D   W++   +         YA SK  ++  A
Sbjct: 115 VDAG-VGRVVHVST-------DEVYGSIDSGSWTESSPLEP----NSPYAASKAGSDLVA 162
Query: 180 LEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNT-SMVHVDD 238
             +   +GLD+         GP+  P+    +  +  L  G    YG   N    VH DD
Sbjct: 163 RAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDD 222
Query: 239 VARAHIFLLEYPDAKGR-----YICSSHTLTIQEMAEFL 272
             R    +L    A GR     +I     LT +E+   L
Sbjct: 223 HCRGIALVL----AGGRAGEIYHIGGGLELTNRELTGIL 257

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	331
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	1e-172
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	1e-164
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	1e-157
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	1e-122
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	5e-64
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	1e-61
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	4e-30
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	2e-24
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	7e-24
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	3e-23
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	6e-23
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	9e-23
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	2e-22
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	4e-21
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	7e-21
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	1e-20
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	3e-20
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	1e-19
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	2e-19
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	2e-19
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	2e-19
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	7e-19
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	8e-19
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	3e-18
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	8e-18
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	9e-18
1xq6_A	253	Unknown protein; structural genomics, protein stru	1e-17
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	2e-16
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	3e-16
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	9e-16
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	1e-15
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	1e-15
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	1e-15
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	3e-15
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	4e-15
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	1e-14
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	1e-14
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	2e-14
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	4e-14
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	4e-14
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	8e-14
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	2e-13
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	3e-13
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	4e-13
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	4e-12
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	8e-12
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	9e-12
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	2e-11
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	2e-10
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	3e-10
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	4e-10
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	5e-10
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	1e-09
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	3e-07
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	4e-07
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	7e-07
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	4e-06
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	1e-04
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	4e-04
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	8e-04

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} Length = 322

 Score =  479 bits (1236), Expect = e-172
 Identities = 187/327 (57%), Positives = 247/327 (75%), Gaps = 5/327 (1%)

Query: 5   KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLR 64
           KGRVCVTGGTGF+ SW+I  LL++GYSV TT+R++ +      +D+SFL NLPGASE+L 
Sbjct: 1   KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPE----RKRDVSFLTNLPGASEKLH 56

Query: 65  IFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGT 124
            F+ADLS+PD F AAI GC G+ H A+P+DF   EPEE++T+R ++G LGILK+C+ S T
Sbjct: 57  FFNADLSNPDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKT 116

Query: 125 VKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAE 184
           VKR +YTSS +AV +N KD D++DE+ WSDVD +R +  +G +YA+SKTL E+A LEF E
Sbjct: 117 VKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGE 176

Query: 185 EHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHI 244
           ++G+D+VTLI   +VG F+CPK   S+  +L L+LG +E+ G +    MVHVDDVARAHI
Sbjct: 177 QNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIG-VTRFHMVHVDDVARAHI 235

Query: 245 FLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSSKKLL 304
           +LLE     GRY CS   + I+EM++ LSAKYPEY I TVD L EI+G R P  ++KKL+
Sbjct: 236 YLLENSVPGGRYNCSPFIVPIEEMSQLLSAKYPEYQILTVDELKEIKGARLPDLNTKKLV 295

Query: 305 DAGFRYNYGIDEMFDEAIQCCKEKGYL 331
           DAGF + Y I++MFD+AIQCCKEKGYL
Sbjct: 296 DAGFDFKYTIEDMFDDAIQCCKEKGYL 322

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* Length = 337

 Score =  459 bits (1183), Expect = e-164
 Identities = 146/331 (44%), Positives = 204/331 (61%), Gaps = 6/331 (1%)

Query: 1   MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGAS 60
           M      VCVTG +GFI SWL+MRLL+ GY+V  TVR   +      K +  L +LP A 
Sbjct: 1   MGSQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNV-----KKVKHLLDLPKAE 55

Query: 61  ERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCL 120
             L ++ ADL+    FD AI GCTGV HVATP+DFE K+PE  + +  I G LGI+KSC 
Sbjct: 56  THLTLWKADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCA 115

Query: 121 KSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAAL 180
            + TV+R+V+TSS   V   +  + + DE+ WSD+++ R        Y +SKTL E+AA 
Sbjct: 116 AAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAW 175

Query: 181 EFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVA 240
           ++A+E+ +D +T+IP++VVGPFI      S+ ++L+ I GN   Y  +     VH+DD+ 
Sbjct: 176 KYAKENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLC 235

Query: 241 RAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSS 300
            AHI+L E P A+GRYICSSH   I ++A+ L  KYPEY IPT     + E  ++   SS
Sbjct: 236 NAHIYLFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVD-ENLKSVCFSS 294

Query: 301 KKLLDAGFRYNYGIDEMFDEAIQCCKEKGYL 331
           KKL D GF + Y +++MF  A+  C+ KG L
Sbjct: 295 KKLTDLGFEFKYSLEDMFTGAVDTCRAKGLL 325

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A Length = 338

 Score =  442 bits (1140), Expect = e-157
 Identities = 134/339 (39%), Positives = 198/339 (58%), Gaps = 17/339 (5%)

Query: 2   EEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASE 61
             GK   CV GGTGF+AS L+  LL  GY+V TTVR   +      K +S L  L    +
Sbjct: 6   PIGKKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQ-----KKVSHLLELQELGD 60

Query: 62  RLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLK 121
            L+IF ADL+    F+A IAGC  V HVATPV F  ++PE  + + AI G + ++K+C +
Sbjct: 61  -LKIFRADLTDELSFEAPIAGCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTR 119

Query: 122 SGTVKRVVYTSSNAAVFYNDKDVD--MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAA 179
           + +VKRV+ TSS AAV  N  D    ++DE  W+D++++         Y  SKTL E+AA
Sbjct: 120 AKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAA 179

Query: 180 LEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNT-------S 232
            +FAEE+ +DL+T+IP+++ G  +      S+  +++LI GN      +          S
Sbjct: 180 WKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVS 239

Query: 233 MVHVDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEG 292
           + HV+DV RAHIF+ E   A GRYIC +   ++ E+A+FLS +YP+Y +PT     +   
Sbjct: 240 IAHVEDVCRAHIFVAEKESASGRYICCAANTSVPELAKFLSKRYPQYKVPT--DFGDFPP 297

Query: 293 YRAPGSSSKKLLDAGFRYNYGIDEMFDEAIQCCKEKGYL 331
                 SS+KL+  GF + YGI+E++DE+++  K KG L
Sbjct: 298 KSKLIISSEKLVKEGFSFKYGIEEIYDESVEYFKAKGLL 336

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A Length = 342

 Score =  352 bits (906), Expect = e-122
 Identities = 82/342 (23%), Positives = 132/342 (38%), Gaps = 24/342 (7%)

Query: 1   MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGAS 60
           + EG   V VTG  GF+AS ++ +LL+HGY V  T RS     +     L    +     
Sbjct: 8   LPEGS-LVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLAN-----LQKRWDAKYPG 61

Query: 61  ERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCL 120
                   D+     +D  I G  GV H+A+ V F +K  +EV+T  AI GTL  L++  
Sbjct: 62  RFETAVVEDMLKQGAYDEVIKGAAGVAHIASVVSFSNKY-DEVVTP-AIGGTLNALRAAA 119

Query: 121 KSGTVKRVVYTSSNAAVFYNDKDVD--MMDETFWSDVDYIRKLDSWGKS-------YAIS 171
            + +VKR V TSS  +      +V+   +DE  W+     +               YA S
Sbjct: 120 ATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAAS 179

Query: 172 KTLTERAALEFAEEHG--LDLVTLIPSMVVGPFICPKFAG--SVRSSLALILGNREEY-G 226
           KT  E AA +F +E+     L  ++P+  +G    P+     +    ++L  G       
Sbjct: 180 KTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALA 239

Query: 227 FLLNTSMVHVDDVARAHIFLLEYPDAKG-RYICSSHTLTIQEMAEFLSAKYPEYPIPTVD 285
            +     V   D+   H+  L  P  +  R   ++ T     +       YP    P   
Sbjct: 240 LMPPQYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADF 299

Query: 286 SLAEIEGYRAPGS-SSKKLLDAGFRYNYGIDEMFDEAIQCCK 326
                +  +   + S + L   G      I+E   + +    
Sbjct: 300 PDQGQDLSKFDTAPSLEILKSLGRPGWRSIEESIKDLVGSET 341

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342

 Score =  205 bits (523), Expect = 5e-64
 Identities = 61/356 (17%), Positives = 117/356 (32%), Gaps = 61/356 (17%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
           +  V G TG +       +   G+ +    R         S  +  L  L          
Sbjct: 15  KYAVLGATGLLGHHAARAIRAAGHDLVLIHRP--------SSQIQRLAYLE-----PECR 61

Query: 67  HADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVK 126
            A++    G + A+ G  GV+  A       +  +E +   A+  T     +CL++  V 
Sbjct: 62  VAEMLDHAGLERALRGLDGVIFSAGYYPSRPRRWQEEV-ASALGQTNPFYAACLQAR-VP 119

Query: 127 RVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH 186
           R++Y  S  A+  + + +    E  + D      L S   SY + K   +  A E A   
Sbjct: 120 RILYVGSAYAMPRHPQGLP-GHEGLFYD-----SLPSGKSSYVLCKWALDEQAREQARN- 172

Query: 187 GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN--REEYGFLLN--TSMVHVDDVARA 242
           GL +V  IP MV+G          +  +   ++      E    +    +++   +  R 
Sbjct: 173 GLPVVIGIPGMVLGE-------LDIGPTTGRVITAIGNGEMTHYVAGQRNVIDAAEAGRG 225

Query: 243 HIFLLEYPDAKGRYICSSHTLTIQEMAEFLSA---KYPEYPIP----------------- 282
            +  LE      RY+ + H L + ++   ++    +    P+                  
Sbjct: 226 LLMALERGRIGERYLLTGHNLEMADLTRRIAELLGQPAPQPMSMAMARALATLGRLRYRV 285

Query: 283 -------TVDSLAEIEGYRAPGSSSKKLLDAGFRYNYGIDEMFDEAIQCCKEKGYL 331
                     ++  +          K   + GF     +D+    AI   ++ GY 
Sbjct: 286 SGQLPLLDETAIEVM-AGGQFLDGRKAREELGFFSTTALDDTLLRAIDWFRDNGYF 340

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227

 Score =  195 bits (497), Expect = 1e-61
 Identities = 55/269 (20%), Positives = 94/269 (34%), Gaps = 45/269 (16%)

Query: 1   MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGAS 60
           ME+ K ++ + G +GF+ S L+   L+ G+ VT  VR    PE            +   +
Sbjct: 1   MEKVK-KIVLIGASGFVGSALLNEALNRGFEVTAVVR---HPE-----------KIKIEN 45

Query: 61  ERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCL 120
           E L++  AD+S  D       G   V+    P  + + +  +      I   L I+    
Sbjct: 46  EHLKVKKADVSSLDEVCEVCKGADAVISAFNPG-WNNPDIYDE----TIKVYLTIIDGVK 100

Query: 121 KSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAAL 180
           K+G V R +      ++F     + +MD     +                 K L E    
Sbjct: 101 KAG-VNRFLMVGGAGSLFIAP-GLRLMDSGEVPE-----------NILPGVKALGEFYLN 147

Query: 181 EFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVA 240
              +E  +D V   P+  + P         VR+    +  +      ++  S + V+D A
Sbjct: 148 FLMKEKEIDWVFFSPAADMRP--------GVRTGRYRLGKDDMIVD-IVGNSHISVEDYA 198

Query: 241 RAHIFLLEYPDAKGRYIC---SSHTLTIQ 266
            A I  LE+P             H     
Sbjct: 199 AAMIDELEHPKHHQERFTIGYLEHHHHHH 227

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317

 Score =  115 bits (290), Expect = 4e-30
 Identities = 66/336 (19%), Positives = 128/336 (38%), Gaps = 44/336 (13%)

Query: 8   VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH 67
           + VTG +G I + L+  L +             D              +   +  ++   
Sbjct: 2   ILVTGSSGQIGTELVPYLAEKYGKKNVIA---SD-------------IVQRDTGGIKFIT 45

Query: 68  ADLSHPDGFDAAIA--GCTGVLHVATPVDFE-DKEPEEVITQRA-INGTLGILKSCLKSG 123
            D+S+ D  D A+       + H+A  +  + +K+P   +  +  +NGT  IL++  +  
Sbjct: 46  LDVSNRDEIDRAVEKYSIDAIFHLAGILSAKGEKDPA--LAYKVNMNGTYNILEAAKQHR 103

Query: 124 TVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFA 183
            V++VV  S+   VF  +   + +          I +  +    + ++K   E     + 
Sbjct: 104 -VEKVVIPST-IGVFGPETPKNKVPS------ITITRPRT---MFGVTKIAAELLGQYYY 152

Query: 184 EEHGLDLVTLIPSMVVGPFICPK-FAGSVRSSLALILGNREEYGFLLNTS----MVHVDD 238
           E+ GLD+ +L    ++     P          +      RE+Y   L  +    M+++ D
Sbjct: 153 EKFGLDVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPD 212

Query: 239 VARAHIFLLEYPDAKGR----YICSSHTLTIQEMAEFLSAKYPEYPIP-TVDSLAEI-EG 292
             +A + L E    K      Y  +++T T  E+   +  + PE+ I    D   +I   
Sbjct: 213 ALKALVDLYEADRDKLVLRNGYNVTAYTFTPSELYSKIKERIPEFEIEYKEDFRDKIAAT 272

Query: 293 YRAPGSSSKKLLDAGFRYNYGIDEMFDEAIQCCKEK 328
           +     SS+   + GF   Y +D   D+ I    EK
Sbjct: 273 WPESLDSSEASNEWGFSIEYDLDRTIDDMIDHISEK 308

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267

 Score = 99.0 bits (247), Expect = 2e-24
 Identities = 41/196 (20%), Positives = 68/196 (34%), Gaps = 32/196 (16%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
           R+ VTG  G +   +  RL      +     S LDP                        
Sbjct: 5   RLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAG----------------PNEECV 48

Query: 67  HADLSHPDGFDAAIAGCTGVLHVA-TPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTV 125
             DL+  +  +A +AGC G++H+    V+    +P E I Q  I G   + ++    G  
Sbjct: 49  QCDLADANAVNAMVAGCDGIVHLGGISVE----KPFEQILQGNIIGLYNLYEAARAHG-Q 103

Query: 126 KRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE 185
            R+V+ SSN         +    +T     D   + D     Y +SK   E  A  + ++
Sbjct: 104 PRIVFASSNHT-------IGYYPQTERLGPDVPARPDG---LYGVSKCFGENLARMYFDK 153

Query: 186 HGLDLVTLIPSMVVGP 201
            G +   +        
Sbjct: 154 FGQETALVRIGSCTPE 169

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377

 Score = 99.3 bits (248), Expect = 7e-24
 Identities = 54/288 (18%), Positives = 92/288 (31%), Gaps = 39/288 (13%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLS--FLKNLPGASERLR 64
            V V GG GF+ S L+ RLL+ G +    V   +D       +L      N+P     +R
Sbjct: 34  NVMVVGGAGFVGSNLVKRLLELGVN---QVHV-VD-------NLLSAEKINVPD-HPAVR 81

Query: 65  IFHADLSHPDGFDAAIAGCTGVLHVATP--VDFEDKEPEEVITQRAINGTLGILKSCLKS 122
                ++      +       V H+AT         +P     +     TL + +     
Sbjct: 82  FSETSITDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADH-ENNTLTTLKLYERLKHF 140

Query: 123 GTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKS-YAISKTLTERAALE 181
             +K+VVY+++           D         V           S Y++SK   E  ++ 
Sbjct: 141 KRLKKVVYSAA-GCSIAEKTFDDAKATEETDIVSLHNND-----SPYSMSKIFGEFYSVY 194

Query: 182 FAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILG----------NREE---YGFL 228
           + ++H L  V      V GP           +   +                        
Sbjct: 195 YHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGG 254

Query: 229 LNT-SMVHVDDVARAHIFLLEYPDAKGRY-ICSSHTLTIQEMAEFLSA 274
           + T   + V+DVA   I         G Y I S    +I ++A  ++ 
Sbjct: 255 VATRDFIFVEDVANGLIACAADGTPGGVYNIASGKETSIADLATKINE 302

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267

 Score = 95.8 bits (239), Expect = 3e-23
 Identities = 37/196 (18%), Positives = 65/196 (33%), Gaps = 32/196 (16%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
           R+ VTG  G + S +   L    + V  +    +D                       I 
Sbjct: 4   RLLVTGAAGGVGSAIRPHLGTLAHEVRLSDI--VDLGAAE--------------AHEEIV 47

Query: 67  HADLSHPDGFDAAIAGCTGVLHVA-TPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTV 125
             DL+        +  C G++H+    V+     P   I Q  I G   + ++    G  
Sbjct: 48  ACDLADAQAVHDLVKDCDGIIHLGGVSVE----RPWNDILQANIIGAYNLYEAARNLG-K 102

Query: 126 KRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE 185
            R+V+ SSN  + Y  +           D +  R+ DS    Y +SK   E  A  +  +
Sbjct: 103 PRIVFASSNHTIGYYPRTT-------RIDTEVPRRPDS---LYGLSKCFGEDLASLYYHK 152

Query: 186 HGLDLVTLIPSMVVGP 201
             ++ + +        
Sbjct: 153 FDIETLNIRIGSCFPK 168

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311

 Score = 95.7 bits (239), Expect = 6e-23
 Identities = 54/329 (16%), Positives = 109/329 (33%), Gaps = 67/329 (20%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVT-----TTVRSELDPE--HRNSKDLSFLKNLPGA 59
           ++ VTGGTGF+  +++  + + G +          ++  D E    +      +  L   
Sbjct: 4   KIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAINDYEYRVSDYTLEDLINQLNDV 63

Query: 60  SERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSC 119
                + H          AA             +     E  +         T  +  +C
Sbjct: 64  D---AVVHL---------AATR------GSQGKIS----EFHD-----NEILTQNLYDAC 96

Query: 120 LKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAA 179
            ++  +  +VY S+  +  Y+D+     +E      D +         Y +SK   E   
Sbjct: 97  YENN-ISNIVYAST-ISA-YSDETSLPWNEKELPLPDLM---------YGVSKLACEHIG 144

Query: 180 LEFAEEHGLDLVTLIPSMVVGPF-----ICPKFAGSVRSSLALILGNREEYGFLLNT-SM 233
             ++ + GL +  L  + + G       +  +F         L L     +   +     
Sbjct: 145 NIYSRKKGLCIKNLRFAHLYGFNEKNNYMINRFFRQAFHGEQLTL-----HANSVAKREF 199

Query: 234 VHVDDVARAHIFLLEYPDAKGRY-ICSSHTLTIQEMAEFLSAKY-----PEYPIPTVDSL 287
           ++  D A++ I+ L+     G + I S   LT  E+A  ++  +          P  ++ 
Sbjct: 200 LYAKDAAKSVIYALKQEKVSGTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNP--NAN 257

Query: 288 AEIEGYRAPGSSSKKLLDAGFRYNYGIDE 316
             I       S +K+LL   F  +Y    
Sbjct: 258 EGIHSSYMDSSKAKELL--DFSTDYNFAT 284

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Length = 311

 Score = 95.3 bits (238), Expect = 9e-23
 Identities = 78/340 (22%), Positives = 125/340 (36%), Gaps = 59/340 (17%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLS--FLKNLPGASERLR 64
           RV VTGG GFI S ++  LL  G  V       LD       +L+    +N+P   + + 
Sbjct: 2   RVLVTGGAGFIGSHIVEDLLARGLEVAV-----LD-------NLATGKRENVP---KGVP 46

Query: 65  IFHADLSHPDGFDAAIAGC--TGVLHVATPVDFED--KEPEEVITQRA-INGTLGILKSC 119
            F  DL   +G + A      T V H A     +   ++P         + G L +L++C
Sbjct: 47  FFRVDLRDKEGVERAFREFRPTHVSHQAAQASVKVSVEDPVL--DFEVNLLGGLNLLEAC 104

Query: 120 LKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAA 179
            + G V+++V+ S+  A++    + +  +E       +  +  S    YA SK   E   
Sbjct: 105 RQYG-VEKLVFASTGGAIYGEVPEGERAEE------TWPPRPKS---PYAASKAAFEHYL 154

Query: 180 LEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREE---YGFLLNTS---- 232
             + + +GL  V+L    V GP   P     V +  A  +        Y           
Sbjct: 155 SVYGQSYGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCV 214

Query: 233 --MVHVDDVARAHIFLLEYPDAKGRY-ICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAE 289
              V+V DVA AH   L   +  G Y + +    T +E+   + A+              
Sbjct: 215 RDYVYVGDVAEAHALALFSLE--GIYNVGTGEGHTTREVLMAV-AEAAGKAPEVQ----- 266

Query: 290 IEGYRAPG------SSSKKLLDAGFRYNYGIDEMFDEAIQ 323
                 PG       S  KL+  G+R   G  E     + 
Sbjct: 267 -PAPPRPGDLERSVLSPLKLMAHGWRPKVGFQEGIRLTVD 305

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333

 Score = 95.0 bits (237), Expect = 2e-22
 Identities = 59/279 (21%), Positives = 99/279 (35%), Gaps = 54/279 (19%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLS--FLKNLPGASERLR 64
           +V +TG  G I S +   LL+ G  V       +D       + +    ++L      L 
Sbjct: 23  KVFITGICGQIGSHIAELLLERGDKVVG-----ID-------NFATGRREHLKD-HPNLT 69

Query: 65  IFHADLSHPDGFDAAIAGC--TGVLHVATPVDFEDKEPEEVITQRAIN--GTLGILKSCL 120
                ++     +  I       V+H A        +P++       N  G   ++++  
Sbjct: 70  FVEGSIADHALVNQLIGDLQPDAVVHTAASYK----DPDDWYNDTLTNCVGGSNVVQAAK 125

Query: 121 KSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAAL 180
           K+  V R VY  + A  +        +              +S   SYAISK+  E    
Sbjct: 126 KNN-VGRFVYFQT-ALCYGVKPIQQPVRLD-----HPRNPANS---SYAISKSANED--- 172

Query: 181 EFAEEHGLDLVTLIPSMVVGPF----ICPKFAGSVRSSLALILGN--REEYGFLLNTSMV 234
            + E  GLD VT   + VVGP       P F   +       +    R+   F      V
Sbjct: 173 -YLEYSGLDFVTFRLANVVGPRNVSGPLPIFFQRLSEGKKCFVTKARRD---F------V 222

Query: 235 HVDDVARAHIFLLEYPDAKGRY-ICSSHTLTIQEMAEFL 272
            V D+ARA +  ++     G Y   S   + I+E+ + +
Sbjct: 223 FVKDLARATVRAVDGV-GHGAYHFSSGTDVAIKELYDAV 260

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Length = 221

 Score = 88.9 bits (220), Expect = 4e-21
 Identities = 30/249 (12%), Positives = 76/249 (30%), Gaps = 44/249 (17%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
           ++ + G TG   S ++    + G+ VT  VR   +              +    + + I 
Sbjct: 2   KIGIIGATGRAGSRILEEAKNRGHEVTAIVR---NAGK-----------ITQTHKDINIL 47

Query: 67  HADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVK 126
             D+   D   + ++    V+        E ++               ++     +    
Sbjct: 48  QKDIF--DLTLSDLSDQNVVVDAYGISPDEAEKHVT--------SLDHLISVLNGTV-SP 96

Query: 127 RVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH 186
           R++     A++  ++    +++     +  Y     +  K     K          + + 
Sbjct: 97  RLLVVGGAASLQIDEDGNTLLESKGLREAPYYPTARAQAKQLEHLK----------SHQA 146

Query: 187 GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFL 246
                 + PS +  P    +  G  +     +L   +        S + ++D A A +  
Sbjct: 147 EFSWTYISPSAMFEP---GERTGDYQIGKDHLLFGSD------GNSFISMEDYAIAVLDE 197

Query: 247 LEYPDAKGR 255
           +E P+    
Sbjct: 198 IERPNHLNE 206

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} Length = 313

 Score = 90.3 bits (225), Expect = 7e-21
 Identities = 70/333 (21%), Positives = 123/333 (36%), Gaps = 54/333 (16%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLS--FLKNLPGASERLR 64
            + VTGG GFI S ++ +L +    +       +D       +LS    + +    E  R
Sbjct: 3   LIVVTGGAGFIGSHVVDKLSE-SNEIVV-----ID-------NLSSGNEEFVN---EAAR 46

Query: 65  IFHADLSHPDGFDAAIAGCTGVLHVA--TPVDFEDKEPEEVITQRAINGTLGILKSCLKS 122
           +  ADL+  D     + G   V H+A    V    + P+E+  +  +  T  +L++  K+
Sbjct: 47  LVKADLAADD-IKDYLKGAEEVWHIAANPDVRIGAENPDEIY-RNNVLATYRLLEAMRKA 104

Query: 123 GTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEF 182
           G V R+V+TS+ + V Y +  V    E      DY     S    Y  SK   E     +
Sbjct: 105 G-VSRIVFTST-STV-YGEAKVIPTPE------DYPTHPIS---LYGASKLACEALIESY 152

Query: 183 AEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLAL-ILGNREE---YGFLLNT-SMVHVD 237
                +       + V+G     +    V     + +  N EE    G      S +++ 
Sbjct: 153 CHTFDMQAWIYRFANVIGR----RSTHGVIYDFIMKLKRNPEELEILGNGEQNKSYIYIS 208

Query: 238 DVARAHIFLLEYPDAKGRY-ICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAP 296
           D   A +F L   +    + I S   + ++ +AE +  +    P                
Sbjct: 209 DCVDAMLFGLRGDERVNIFNIGSEDQIKVKRIAEIVCEELGLSPRFRF----TGGDRGWK 264

Query: 297 G------SSSKKLLDAGFRYNYGIDEMFDEAIQ 323
           G       S +KL   G++  Y  +E    A++
Sbjct: 265 GDVPVMLLSIEKLKRLGWKPRYNSEEAVRMAVR 297

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Length = 321

 Score = 89.5 bits (223), Expect = 1e-20
 Identities = 56/290 (19%), Positives = 84/290 (28%), Gaps = 69/290 (23%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLS--FLKNLPGASERLR 64
           R+ +TGG GFI   L   L+  G  VT      LD       DL    +    G      
Sbjct: 9   RILITGGAGFIGGHLARALVASGEEVTV-----LD-------DLRVPPMIPPEGT----- 51

Query: 65  IFHADLSHPDGFD---AAIAGCTGVLHVATP--VDFEDKEPEEVITQRAINGTLGILKSC 119
                       +     ++    V H+A+   V    K+P +      ++    +L  C
Sbjct: 52  ---GKFLEKPVLELEERDLSDVRLVYHLASHKSVPRSFKQPLD--YLDNVDSGRHLLALC 106

Query: 120 LKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAA 179
              G V +VV  S+   V Y   D     E         R        YA SK   E  A
Sbjct: 107 TSVG-VPKVVVGST-CEV-YGQADTLPTPED---SPLSPRSP------YAASKVGLEMVA 154

Query: 180 LEFAEEHGLDLVTLI-----------PSMVVGPFICPKFAGSVRSSLALILGNREE--YG 226
                      V ++           P  +V                A +L   E    G
Sbjct: 155 GAHQRASVAPEVGIVRFFNVYGPGERPDALVPRLC------------ANLLTRNELPVEG 202

Query: 227 FLLNT-SMVHVDDVARAHIFLLEYPDAKGRY-ICSSHTLTIQEMAEFLSA 274
                    ++ DV    + L   P         S  +L++ ++   L A
Sbjct: 203 DGEQRRDFTYITDVVDKLVALANRPLP-SVVNFGSGQSLSVNDVIRILQA 251

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342

 Score = 89.0 bits (221), Expect = 3e-20
 Identities = 62/347 (17%), Positives = 104/347 (29%), Gaps = 58/347 (16%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRS-----ELDPEHRNSKDLSFLKNLPGASE 61
            + + G  G +   L  RL+  G      V          PE              G S 
Sbjct: 16  HIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAP-----------AGFSG 64

Query: 62  RLRIFHADLSHPDGFDAAI-AGCTGVLHVATPVDFE-DKEPEEVITQRAIN--GTLGILK 117
            +    ADLS P   +  + A    + H+A  V  E + + +       IN  GT  +  
Sbjct: 65  AVDARAADLSAPGEAEKLVEARPDVIFHLAAIVSGEAELDFD---KGYRINLDGTRYLFD 121

Query: 118 SC----LKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKT 173
           +      K G   RVV+TSS  AVF       + DE   + +           SY   K 
Sbjct: 122 AIRIANGKDGYKPRVVFTSS-IAVFGAPLPYPIPDEFHTTPLT----------SYGTQKA 170

Query: 174 LTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALI-----LGNREEYGFL 228
           + E    +++     D + +    +      P    +  S          L  +E    +
Sbjct: 171 ICELLLSDYSRRGFFDGIGIRLPTICIR---PGKPNAAASGFFSNILREPLVGQEAVLPV 227

Query: 229 ---LNTSMVHVDDVARAHIFLLEYPDAKGR----YICSSHTLTIQEMAEFLSAKYPEYPI 281
              +              I        K            + T+ E  E L     E  +
Sbjct: 228 PESIRHWHASPRSAVGFLIHGAMIDVEKVGPRRNLSMPGLSATVGEQIEALRKVAGEKAV 287

Query: 282 PTV-----DSLAEIEGYRAPGSSSKKLLDAGFRYNYGIDEMFDEAIQ 323
             +     + +  +    APG  +K+  + GF      +E+    I+
Sbjct: 288 ALIRREPNEMIMRMCEGWAPGFEAKRARELGFTAESSFEEIIQVHIE 334

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A* 3aw9_A* Length = 312

 Score = 86.4 bits (215), Expect = 1e-19
 Identities = 61/313 (19%), Positives = 106/313 (33%), Gaps = 65/313 (20%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLS--FLKNLPGASERLR 64
           R+ VTGG GFI S L+ +L++ GY V       +D       +LS    + +        
Sbjct: 2   RIVVTGGAGFIGSHLVDKLVELGYEVVV-----VD-------NLSSGRREFVN---PSAE 46

Query: 65  IFHADLSHPDGFDAAIAGCTGVLHVATPVDFED--KEPEEVITQRAINGTLGILKSCLKS 122
           +   DL        A      V H A   +      EP        +  T  +L+   ++
Sbjct: 47  LHVRDLKDYSWG--AGIKGDVVFHFAANPEVRLSTTEPIVHF-NENVVATFNVLEWARQT 103

Query: 123 GTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEF 182
           G V+ VV+ SS + V Y D DV    E      +   K  S    Y  +K   E     +
Sbjct: 104 G-VRTVVFASS-STV-YGDADVIPTPE------EEPYKPIS---VYGAAKAAGEVMCATY 151

Query: 183 AEEHGLDLVTLIPSMVVGPF----ICPKFAGSVRSSLALILGNREE--YG-------FLL 229
           A   G+  + +  + VVGP     +   F       + L          G       +  
Sbjct: 152 ARLFGVRCLAVRYANVVGPRLRHGVIYDFI------MKLRRNPNVLEVLGDGTQRKSY-- 203

Query: 230 NTSMVHVDDVARAHIFLLEYPDAKGRY-----ICSSHTLTIQEMAEFLSAKYPEYPIPTV 284
               ++V D   A +   +  +          + +   + + ++A+ + A+         
Sbjct: 204 ----LYVRDAVEATLAAWKKFEEMDAPFLALNVGNVDAVRVLDIAQIV-AEVLGLRPEIR 258

Query: 285 DSLAEIEGYRAPG 297
              +  +G   PG
Sbjct: 259 LVPSTPDGRGWPG 271

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Length = 357

 Score = 87.0 bits (216), Expect = 2e-19
 Identities = 62/303 (20%), Positives = 102/303 (33%), Gaps = 50/303 (16%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
            + VTGG GFI S ++  L D G +    V    D     +K      NL   +    + 
Sbjct: 48  MIIVTGGAGFIGSNIVKALNDKGITDILVV----DNLKDGTK----FVNLVDLNIADYMD 99

Query: 67  HADLSHPDGFDAAIAGCTGVLHVA----TPVDFEDKEPEEVITQRAINGTLGILKSCLKS 122
             D                + H      T     D +    +       +  +L  CL+ 
Sbjct: 100 KEDFLIQIMAGEEFGDVEAIFHEGACSSTTE--WDGKY---MMDNNYQYSKELLHYCLER 154

Query: 123 GTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEF 182
                 +Y SS AA  Y  +  D ++       +Y + L+     +  SK L +    + 
Sbjct: 155 E--IPFLYASS-AAT-YGGRTSDFIESR-----EYEKPLN----VFGYSKFLFDEYVRQI 201

Query: 183 AEEHGLDLVTLIPSMVVGPFICPK-FAGSVRSSLALILGNREE----YG-------FLLN 230
             E    +V      V GP    K    SV   L   L N E      G       F   
Sbjct: 202 LPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDF--- 258

Query: 231 TSMVHVDDVARAHIFLLEYPDAKGRY-ICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAE 289
              V+V DVA  +++ LE     G + + +    + Q +A+   A + +  I  +    +
Sbjct: 259 ---VYVGDVADVNLWFLEN-GVSGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDK 314

Query: 290 IEG 292
           ++G
Sbjct: 315 LKG 317

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 Length = 310

 Score = 85.7 bits (213), Expect = 2e-19
 Identities = 63/302 (20%), Positives = 103/302 (34%), Gaps = 50/302 (16%)

Query: 8   VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH 67
           + VTGG GFI S ++  L D G +    V    D     +K      NL   +    +  
Sbjct: 2   IIVTGGAGFIGSNIVKALNDKGITDILVV----DNLKDGTK----FVNLVDLNIADYMDK 53

Query: 68  ADLSHPDGFDAAIAGCTGVLHVA----TPVDFEDKEPEEVITQRAINGTLGILKSCLKSG 123
            D                + H      T     D +    +       +  +L  CL+  
Sbjct: 54  EDFLIQIMAGEEFGDVEAIFHEGACSSTTE--WDGKY---MMDNNYQYSKELLHYCLERE 108

Query: 124 TVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFA 183
                +Y SS AA  Y  +  D ++       +Y + L+     Y  SK L +    +  
Sbjct: 109 I--PFLYASS-AAT-YGGRTSDFIESR-----EYEKPLN----VYGYSKFLFDEYVRQIL 155

Query: 184 EEHGLDLVTLIPSMVVGPFICPK-FAGSVRSSLALILGNREE----YG-------FLLNT 231
            E    +V      V GP    K    SV   L   L N E      G       F    
Sbjct: 156 PEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDF---- 211

Query: 232 SMVHVDDVARAHIFLLEYPDAKGRY-ICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEI 290
             V+V DVA  +++ LE   + G + + +    + Q +A+   A + +  I  +    ++
Sbjct: 212 --VYVGDVADVNLWFLENGVS-GIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKL 268

Query: 291 EG 292
           +G
Sbjct: 269 KG 270

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286

 Score = 85.5 bits (212), Expect = 2e-19
 Identities = 48/320 (15%), Positives = 94/320 (29%), Gaps = 65/320 (20%)

Query: 13  GTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSH 72
           G G +   L  RL   G+ VT   RS                        ++   AD++ 
Sbjct: 10  GCGDLGLELARRLTAQGHEVTGLRRSA-----------------QPMPAGVQTLIADVTR 52

Query: 73  PDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTS 132
           PD   + +     +L             +E      + G    L + L+   ++ V + S
Sbjct: 53  PDTLASIVHLRPEILVYCVAASEYS---DEHYRLSYVEGLRNTLSA-LEGAPLQHVFFVS 108

Query: 133 SNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERA-ALEFAEE--HGLD 189
           S   V Y  +  + +DE                               +  AE       
Sbjct: 109 S-TGV-YGQEVEEWLDED------------------TPPIAKDFSGKRMLEAEALLAAYS 148

Query: 190 LVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEY 249
              L  S + GP    +     ++        R  +     T+ +H DD A    +L++ 
Sbjct: 149 STILRFSGIYGP---GRLRMIRQAQTPEQWPARNAW-----TNRIHRDDGAAFIAYLIQQ 200

Query: 250 PDAKGRY----ICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSSKKLLD 305
                      +  +  L + ++  +L+ +      P   +       +    S+ +LL 
Sbjct: 201 RSHAVPERLYIVTDNQPLPVHDLLRWLADRQ-GIAYPAGATPPVQGNKKL---SNARLLA 256

Query: 306 AGFRYNY-----GIDEMFDE 320
           +G++  Y     G   +   
Sbjct: 257 SGYQLIYPDYVSGYGALLAA 276

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Length = 379

 Score = 85.5 bits (212), Expect = 7e-19
 Identities = 51/282 (18%), Positives = 99/282 (35%), Gaps = 35/282 (12%)

Query: 1   MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGAS 60
             E   ++ +TG  GFIAS +  RL   G+ V  +             D    +++    
Sbjct: 26  PSENL-KISITGAGGFIASHIARRLKHEGHYVIAS-------------DWKKNEHMTEDM 71

Query: 61  ERLRIFHADLSHPDGFDAAIAGCTGVLHVATPV---DFEDKEPEEVITQRAINGTLGILK 117
                   DL   +       G   V ++A  +    F       ++    +  +  +++
Sbjct: 72  FCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTM-ISFNMIE 130

Query: 118 SCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDET--FWSDVDYIRKLDSWGKSYAISKTLT 175
           +   +G +KR  Y SS A + Y +             SD  +  +       + + K  T
Sbjct: 131 AARING-IKRFFYASS-ACI-YPEFKQLETTNVSLKESDA-WPAEPQDA---FGLEKLAT 183

Query: 176 ERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALI---LGNREE---YGFLL 229
           E     + ++ G++        + GPF   K  G  ++  A       + +    +G  L
Sbjct: 184 EELCKHYNKDFGIECRIGRFHNIYGPFGTWK-GGREKAPAAFCRKAQTSTDRFEMWGDGL 242

Query: 230 NT-SMVHVDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAE 270
            T S   +D+     + L +    +   I S   +++ EMAE
Sbjct: 243 QTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAE 284

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478

 Score = 86.1 bits (213), Expect = 8e-19
 Identities = 61/325 (18%), Positives = 98/325 (30%), Gaps = 51/325 (15%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTV------RSELDPEHR-----NSKDLSFLKN 55
            V +TG TGF+  +L++ LL     V   +       S+ D   R     +S D   L++
Sbjct: 75  TVLLTGATGFLGRYLVLELLRRL-DVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRH 133

Query: 56  L-PGASERLRIFHADLSHPD-GFDAA-----IAGCTGVLHVATPVDFEDKEPEEVITQRA 108
               A++RL +   D S PD G D             ++  A  V+              
Sbjct: 134 FKELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNAFPYH-----ELFG 188

Query: 109 IN--GTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGK 166
            N  GT  +++  L +  +K   Y S+       +      D               W  
Sbjct: 189 PNVAGTAELIRIAL-TTKLKPFTYVSTADVGAAIEPSAFTEDADIRVISPTRTVDGGWAG 247

Query: 167 SYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGP----FICPK---FAGSVRSSLAL-- 217
            Y  SK   E    E  +   L +      M++                  V S +A   
Sbjct: 248 GYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRMVLSLMATGI 307

Query: 218 ---ILGNREEYGFLLNT--SMVHVDDVARAHIFLLEYPDAKGRY------ICSSHT--LT 264
                   +  G         + V  VA A   L                + + H   + 
Sbjct: 308 APRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGSSLAGFATYHVMNPHDDGIG 367

Query: 265 IQEMAEFLSAKYPEYPIPTVDSLAE 289
           + E  ++L      YPI  +D  AE
Sbjct: 368 LDEYVDWLIEAG--YPIRRIDDFAE 390

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Length = 352

 Score = 83.5 bits (207), Expect = 3e-18
 Identities = 58/296 (19%), Positives = 101/296 (34%), Gaps = 51/296 (17%)

Query: 1   MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGAS 60
           +        +TG  GFI S L+  LL     V           H+ + D           
Sbjct: 23  LPAQPKVWLITGVAGFIGSNLLETLLKLDQKVV--GLDNFATGHQRNLDEVRSLVSEKQW 80

Query: 61  ERLRIFHADLSHPDGFDAAIAGCTGVLHVA--TPVDFEDKEPEEVITQRA-INGTLGILK 117
              +    D+ + D  + A AG   VLH A    V     +P    +    I+G L +L 
Sbjct: 81  SNFKFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPIT--SNATNIDGFLNMLI 138

Query: 118 SCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTER 177
           +   +  V+   Y +S ++  Y D       E      D I K  S    YA++K + E 
Sbjct: 139 AARDAK-VQSFTYAAS-SST-YGDHPGLPKVE------DTIGKPLS---PYAVTKYVNEL 186

Query: 178 AALEFAEEHGLDLVTL----------IPSMVVGPFICPKFAGSVRSSLALILGNREEYG- 226
            A  F+  +G   + L           P+      I PK+  S+     + +      G 
Sbjct: 187 YADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVI-PKWTSSMIQGDDVYI-----NGD 240

Query: 227 ------FLLNTSMVHVDDVARAHIFLLEYP-DAKGR-Y-ICSSHTLTIQEMAEFLS 273
                 F       ++++  +A++       DA+ + Y I      ++ ++   L 
Sbjct: 241 GETSRDF------CYIENTVQANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALR 290

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Length = 206

 Score = 79.7 bits (197), Expect = 8e-18
 Identities = 36/249 (14%), Positives = 72/249 (28%), Gaps = 56/249 (22%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
           ++ + G TG      + + +  GY VT  VR   D     S+                + 
Sbjct: 5   KIAIFGATGQTGLTTLAQAVQAGYEVTVLVR---DSSRLPSE----------GPRPAHVV 51

Query: 67  HADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVK 126
             D+      D  +AG   V+ +    +  D  P  V+++ A N    I+ +    G V 
Sbjct: 52  VGDVLQAADVDKTVAGQDAVIVLLGTRN--DLSPTTVMSEGARN----IVAAMKAHG-VD 104

Query: 127 RVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH 186
           +VV  +S   ++   K    +                  ++             +   E 
Sbjct: 105 KVVACTSAFLLWDPTKVPPRL------------------QAVTDDH----IRMHKVLRES 142

Query: 187 GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFL 246
           GL  V ++P                 +    +  +           ++   D+    +  
Sbjct: 143 GLKYVAVMPPH---------IGDQPLTGAYTVTLDGRGPS-----RVISKHDLGHFMLRC 188

Query: 247 LEYPDAKGR 255
           L   +  G 
Sbjct: 189 LTTDEYDGH 197

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Length = 312

 Score = 81.6 bits (202), Expect = 9e-18
 Identities = 54/338 (15%), Positives = 120/338 (35%), Gaps = 53/338 (15%)

Query: 7   RVCVTGGTGFIASWLIMRLLD-HGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRI 65
           ++ + G  G I + L  +L   +G             E+  + D+  L            
Sbjct: 4   KILIIGACGQIGTELTQKLRKLYGT------------ENVIASDIRKLN--TDVVNSGPF 49

Query: 66  FHADLSHPDGFDAAIA--GCTGVLHVA--TPVDFEDKEPEEVITQRAINGTLGILKSCLK 121
              +    +  +  +     T +  +A       E K P        +N    +L     
Sbjct: 50  EVVNALDFNQIEHLVEVHKITDIYLMAALLSATAE-KNPAFAW-DLNMNSLFHVLNLAKA 107

Query: 122 SGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALE 181
              +K++ + SS  AVF      +   +        I +  +    Y ISK   ER    
Sbjct: 108 KK-IKKIFWPSS-IAVFGPTTPKENTPQ------YTIMEPST---VYGISKQAGERWCEY 156

Query: 182 FAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR----EEYGFLLNTS----M 233
           +   +G+D+ ++    ++     P   G   +  A+ +  +    ++Y   L++     M
Sbjct: 157 YHNIYGVDVRSIRYPGLISWSTPP---GGGTTDYAVDIFYKAIADKKYECFLSSETKMPM 213

Query: 234 VHVDDVARAHIFLLEYPDAKGR----YICSSHTLTIQEMAEFLSAKYPE----YPIPTVD 285
           +++DD   A I +++ P  K +    Y  ++ + T  E+A  +    PE    Y      
Sbjct: 214 MYMDDAIDATINIMKAPVEKIKIHSSYNLAAMSFTPTEIANEIKKHIPEFTITYEPDFRQ 273

Query: 286 SLAEIEGYRAPGSSSKKLLDAGFRYNYGIDEMFDEAIQ 323
            +A+        S +++     +++ + ++ M  + I+
Sbjct: 274 KIADSWPASIDDSQAREDW--DWKHTFDLESMTKDMIE 309

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253

 Score = 80.3 bits (198), Expect = 1e-17
 Identities = 42/286 (14%), Positives = 81/286 (28%), Gaps = 64/286 (22%)

Query: 4   GKGRVCVTGGTGFIASWLIMRLLD--HGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASE 61
               V VTG +G     +  +L +    +     VRS               + + G ++
Sbjct: 3   NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSA-----------QGKEKIGGEAD 51

Query: 62  RLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAIN----------- 110
              +F  D++  D  + A  G   ++ + + V       +     R              
Sbjct: 52  ---VFIGDITDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQV 108

Query: 111 ---GTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKS 167
              G    + +   +G VK +V   S       + D  +                    +
Sbjct: 109 DWIGQKNQIDAAKVAG-VKHIVVVGSMGG---TNPDHPLNKLGNG--------------N 150

Query: 168 YAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGF 227
             + K   E+       + G     +                       L++G  +E   
Sbjct: 151 ILVWKRKAEQY----LADSGTPYTIIRAGG---------LLDKEGGVRELLVGKDDELLQ 197

Query: 228 LLNTSMVHVDDVARAHIFLLEYPDAKGR-Y-ICSSHTLTIQEMAEF 271
             +T  V   DVA   I  L + +AK + + + S    T     +F
Sbjct: 198 -TDTKTVPRADVAEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKDF 242

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219

 Score = 75.8 bits (187), Expect = 2e-16
 Identities = 38/273 (13%), Positives = 86/273 (31%), Gaps = 61/273 (22%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
           ++ + G TG +   L+  L    Y +    R     E         +         ++  
Sbjct: 2   KIFIVGSTGRVGKSLLKSLSTTDYQIYAGAR---KVEQ--------VPQYNN----VKAV 46

Query: 67  HADLS-HPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTV 125
           H D+   P+     + G   +++V+       K   +V       G + ++++  K+  V
Sbjct: 47  HFDVDWTPEEMAKQLHGMDAIINVSG---SGGKSLLKVDLY----GAVKLMQAAEKAE-V 98

Query: 126 KRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE 185
           KR +  S+       +K +    +                K Y I+K   +       +E
Sbjct: 99  KRFILLST-IFSLQPEKWIGAGFDAL--------------KDYYIAKHFADLYLT---KE 140

Query: 186 HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIF 245
             LD   + P  +       +  G +  +  +             ++   + DVA     
Sbjct: 141 TNLDYTIIQPGALTE----EEATGLIDINDEV-------------SASNTIGDVADTIKE 183

Query: 246 LLEYPDAKGRY--ICSSHTLTIQEMAEFLSAKY 276
           L+    + G+   + +  T   + +   L   +
Sbjct: 184 LVMTDHSIGKVISMHNGKTAIKEALESLLEHHH 216

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Length = 404

 Score = 77.9 bits (192), Expect = 3e-16
 Identities = 47/369 (12%), Positives = 105/369 (28%), Gaps = 61/369 (16%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVT-----TTVRSELDPEHRNSKDLSFLKNLPGASE 61
           RV V GG G+      + L    Y V           +      +   ++ + +     +
Sbjct: 13  RVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWK 72

Query: 62  -----RLRIFHADLSHPDGFDAAIAG--CTGVLHVA--TPVDFEDKEPEE-VITQRA-IN 110
                 + ++  D+   +    +        V+H        +   +    V TQ   + 
Sbjct: 73  ALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVI 132

Query: 111 GTLGILKSCLKSGTVKRVVYTSSNAAVFYNDK------DVDMMDETFWSDVDYIRKLDSW 164
           GTL +L +  + G    +V        +           + +        + Y ++  S+
Sbjct: 133 GTLNVLFAIKEFGEECHLVK-LGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSF 191

Query: 165 GKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREE 224
              Y +SK           +  G+    L   +V G              L   L     
Sbjct: 192 ---YHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEM---HEELRNRLDYDAV 245

Query: 225 YG-----FLLNTSM----------------VHVDDVARAHIFLLEYPDAKGR-YICSSHT 262
           +G     F +  ++                + + D  +     +  P   G   + +  T
Sbjct: 246 FGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFT 305

Query: 263 --LTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPG------SSSKKLLDAGFRYNYGI 314
              ++ E+A  ++    +  +        +   R         +   KL++ G   +Y  
Sbjct: 306 EQFSVNELASLVTKAGSKLGLDV--KKMTVPNPRVEAEEHYYNAKHTKLMELGLEPHYLS 363

Query: 315 DEMFDEAIQ 323
           D + D  + 
Sbjct: 364 DSLLDSLLN 372

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364

 Score = 76.3 bits (187), Expect = 9e-16
 Identities = 46/306 (15%), Positives = 83/306 (27%), Gaps = 50/306 (16%)

Query: 10  VTGGTGFIASWLIMRLLDHGYS-----VTTTVRSELDPEHRNSKDLSFLKNLPGASERLR 64
           + G TG I + L   L           V    R      H                  + 
Sbjct: 6   IVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWH--------------EDNPIN 51

Query: 65  IFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSG- 123
               D+S PD   A ++  T V HV     + ++  E+   +        +L + + +  
Sbjct: 52  YVQCDISDPDDSQAKLSPLTDVTHVFYVT-WANRSTEQENCEANSKMFRNVLDAVIPNCP 110

Query: 124 TVKRVVYTSSNAAVFYNDKDVD--MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALE 181
            +K +   +         +        +  +++       D     Y       E   LE
Sbjct: 111 NLKHISLQTGRKHYMGPFESYGKIESHDPPYTE-------DLPRLKYMNFYYDLEDIMLE 163

Query: 182 -FAEEHGLDLVTLIPSMVVGP----------FICPKFAGSVRSSLALIL-GNREEYGFLL 229
              ++ GL      P  + G            +C   A        L   G +  +    
Sbjct: 164 EVEKKEGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGY- 222

Query: 230 NTSMVHVDDVARAHIFLLEYPDAKGRY--ICSSHTLTIQEM----AEFLSAKYPEYPIPT 283
            +     D +A  HI+    P AK     + +      +      AE    +  EY    
Sbjct: 223 -SDCSDADLIAEHHIWAAVDPYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYEEGV 281

Query: 284 VDSLAE 289
              L +
Sbjct: 282 DLKLQD 287

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236

 Score = 74.3 bits (183), Expect = 1e-15
 Identities = 48/249 (19%), Positives = 83/249 (33%), Gaps = 55/249 (22%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
           RV V G  G +A +L+  L + G+     VR   + E         L+   GAS+   I 
Sbjct: 23  RVLVVGANGKVARYLLSELKNKGHEPVAMVR---NEEQ-----GPELRER-GASD---IV 70

Query: 67  HADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVK 126
            A+L   + F  A A    V+  A        +   +I      G +  ++   K G +K
Sbjct: 71  VANL--EEDFSHAFASIDAVVFAAGSGPHTGADKTILIDLW---GAIKTIQEAEKRG-IK 124

Query: 127 RVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH 186
           R +  SS   V  +   ++M                   + Y ++K L +       +  
Sbjct: 125 RFIMVSSVGTVDPDQGPMNM-------------------RHYLVAKRLADDE----LKRS 161

Query: 187 GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFL 246
            LD   + P  +       +  G V     +     E          +   DVA+    L
Sbjct: 162 SLDYTIVRPGPLSN----EESTGKVT----VSPHFSEITR------SITRHDVAKVIAEL 207

Query: 247 LEYPDAKGR 255
           ++     G+
Sbjct: 208 VDQQHTIGK 216

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Length = 224

 Score = 73.9 bits (181), Expect = 1e-15
 Identities = 33/251 (13%), Positives = 67/251 (26%), Gaps = 42/251 (16%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
           ++ V G TG   S ++      G+ V   VR   DP+           +  GA     + 
Sbjct: 2   KIAVLGATGRAGSAIVAEARRRGHEVLAVVR---DPQK--------AADRLGA----TVA 46

Query: 67  HADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVK 126
                     +A +     V+   +      +    +     +        S L++    
Sbjct: 47  TLVKEPLVLTEADLDSVDAVVDALSVPWGSGRGYLHLDFATHLV-------SLLRNSDTL 99

Query: 127 RVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH 186
            V    S +          ++D              +  + +                  
Sbjct: 100 AVFILGSASLAMPGADHPMILDFP----------ESAASQPWYDGALYQYYEYQFLQMNA 149

Query: 187 GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFL 246
            ++ + + PS              V     L++G           S +   ++A A +  
Sbjct: 150 NVNWIGISPSEAFPS---GPATSYVAGKDTLLVGED-------GQSHITTGNMALAILDQ 199

Query: 247 LEYPDAKGRYI 257
           LE+P A    I
Sbjct: 200 LEHPTAIRDRI 210

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Length = 345

 Score = 75.5 bits (186), Expect = 1e-15
 Identities = 56/286 (19%), Positives = 98/286 (34%), Gaps = 45/286 (15%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRI 65
           RV + G  GFI + L  RLL    Y V       LD                        
Sbjct: 2   RVLILGVNGFIGNHLTERLLREDHYEVYG-----LDIGSDAISRFL-------NHPHFHF 49

Query: 66  FHADLSHP-DGFDAAIAGCTGVLH---VATPVDFEDKEPEEVITQRAINGTLGILKSCLK 121
              D+S   +  +  +  C  VL    +ATP+++  + P  V  +      L I++ C+K
Sbjct: 50  VEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYT-RNPLRVF-ELDFEENLRIIRYCVK 107

Query: 122 SGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGK---SYAISKTLTERA 178
               KR+++ S++    Y        DE   + +     +    K    Y++SK L +R 
Sbjct: 108 YR--KRIIFPSTSEV--YGMCSDKYFDEDHSNLI-----VGPVNKPRWIYSVSKQLLDRV 158

Query: 179 ALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLAL------ILGNRE--EYGFLLN 230
              + E+ GL      P   +GP +    A  + SS A+      ++             
Sbjct: 159 IWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQ 218

Query: 231 T-SMVHVDDVARAHIFLLEYPDAKGRYIC-----SSHTLTIQEMAE 270
                 + D   A   ++E    +            +  +I+E+ E
Sbjct: 219 KRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGE 264

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Length = 351

 Score = 74.6 bits (184), Expect = 3e-15
 Identities = 57/289 (19%), Positives = 97/289 (33%), Gaps = 39/289 (13%)

Query: 1   MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGAS 60
           +        +TG  GFI S L+ +LL     V           H+ + D           
Sbjct: 21  LIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVI--GLDNFSTGHQYNLDEVKTLVSTEQW 78

Query: 61  ERLRIFHADLSHPDGFDAAIAGCTGVLHVA--TPVDFEDKEPEEVITQRAINGTLGILKS 118
            R      D+      +  + G   VLH A    V     +P        I G L IL +
Sbjct: 79  SRFCFIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTN-ATNITGFLNILHA 137

Query: 119 CLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERA 178
              +  V+   Y +S ++  Y D              + I    S    YA++K + E  
Sbjct: 138 AKNAQ-VQSFTYAAS-SST-YGD------HPALPKVEENIGNPLS---PYAVTKYVNEIY 185

Query: 179 ALEFAEEHGLDLVTL----------IPSMVVGPFICPKFAGSVRSSLALILGNREEYGFL 228
           A  +A  +G   + L           P+      I PK+  ++     + +      G  
Sbjct: 186 AQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVI-PKWTAAMLKGDDVYING---DG-- 239

Query: 229 LNTS--MVHVDDVARAHIF-LLEYPDAKGR-Y-ICSSHTLTIQEMAEFL 272
             TS    ++D+V + +I   L    AK   Y +      T+ E++ ++
Sbjct: 240 -ETSRDFCYIDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYI 287

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A Length = 299

 Score = 73.6 bits (181), Expect = 4e-15
 Identities = 50/295 (16%), Positives = 91/295 (30%), Gaps = 67/295 (22%)

Query: 8   VCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
           V V GGTG     +   LL+ G + V    R   +P  + +K+L     L GA     + 
Sbjct: 8   VVVFGGTGAQGGSVARTLLEDGTFKVRVVTR---NPRKKAAKELR----LQGAE----VV 56

Query: 67  HADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVK 126
             D       + A+ G      V    +   +E E    +   +          + G + 
Sbjct: 57  QGDQDDQVIMELALNGAYATFIVTNYWESCSQEQEVKQGKLLAD-------LARRLG-LH 108

Query: 127 RVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKL--DSWGKSYAISKTLTERAALEFAE 184
            VVY+                       ++ I+KL       ++   K   E    E+  
Sbjct: 109 YVVYSG----------------------LENIKKLTAGRLAAAHFDGKGEVE----EYFR 142

Query: 185 EHGLDLVTLIP----SMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVA 240
           + G+ + ++        ++  F+  K        L+L  G+            + V D+ 
Sbjct: 143 DIGVPMTSVRLPCYFENLLSHFLPQKAPDGKSYLLSLPTGDVP-------MDGMSVSDLG 195

Query: 241 R-AHIFLLEYPDAKGRYIC-SSHTLTIQEMAEFLS------AKYPEYPIPTVDSL 287
                 L       G+ I  S+   T +E A  L+          +      + L
Sbjct: 196 PVVLSLLKMPEKYVGQNIGLSTCRHTAEEYAALLTKHTRKVVHDAKMTPEDYEKL 250

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* Length = 318

 Score = 72.6 bits (178), Expect = 1e-14
 Identities = 49/311 (15%), Positives = 90/311 (28%), Gaps = 58/311 (18%)

Query: 5   KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLR 64
           K ++ + GGTG+I + ++   L  G+      R        NS   + L      S    
Sbjct: 11  KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRP-------NSSKTTLLDEFQ--SLGAI 61

Query: 65  IFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGT 124
           I   +L   +     +     V+                     I     IL++   +G 
Sbjct: 62  IVKGELDEHEKLVELMKKVDVVISALAF--------------PQILDQFKILEAIKVAGN 107

Query: 125 VKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAE 184
           +KR + +                   F  + D I  L  +           +R      E
Sbjct: 108 IKRFLPSD------------------FGVEEDRINALPPFEALIER-----KRMIRRAIE 144

Query: 185 EHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHI 244
           E  +    +  +     FI              + G  E        +M +  D+    I
Sbjct: 145 EANIPYTYVSANCFASYFINYLLRPYDPKDEITVYGTGEAK-----FAMNYEQDIGLYTI 199

Query: 245 FLLEYPDAKGR---YICSSHTLTIQEMAEFLSAKYPE----YPIPTVDSLAEIEGYRAPG 297
            +   P A  R   Y  S++ +T  E+      K  +      +P  + +A  +    P 
Sbjct: 200 KVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVPEEEIVALTKELPEPE 259

Query: 298 SSSKKLLDAGF 308
           +    +L   F
Sbjct: 260 NIPIAILHCLF 270

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330

 Score = 72.6 bits (179), Expect = 1e-14
 Identities = 59/355 (16%), Positives = 113/355 (31%), Gaps = 89/355 (25%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLS--FLKNLPGASERLR 64
           R+ +TGG G + S LI   L  G+ +       +D       + +    + LP     L 
Sbjct: 22  RILITGGAGCLGSNLIEHWLPQGHEILV-----ID-------NFATGKREVLP-PVAGLS 68

Query: 65  IFHADLSHPDGFDAAIAGC--TGVLHVATPVDFEDKEPEEVITQRAIN--GTLGILKSCL 120
           +    ++     + A      T V+H A       K+P++     A N  G++ + K+  
Sbjct: 69  VIEGSVTDAGLLERAFDSFKPTHVVHSAAAY----KDPDDWAEDAATNVQGSINVAKAAS 124

Query: 121 KSGTVKRVVYTSSNAAVFYNDKDVDMMDETF----WSDVDYIRKLDSWGKSYAISKTLTE 176
           K+G VKR++   + A   Y       +        ++             SY ISKT  E
Sbjct: 125 KAG-VKRLLNFQT-ALC-YGRPATVPIPIDSPTAPFT-------------SYGISKTAGE 168

Query: 177 RAALEFAEEHGLDLVTLIPSMVVGPF-----ICPKFAGSVRSSLALILGNREEYG----- 226
                F     + +V+L  + V GP      I P F          +   ++ +      
Sbjct: 169 A----FLMMSDVPVVSLRLANVTGPRLAIGPI-PTF-------YKRLKAGQKCFCSDTVR 216

Query: 227 -FLLNTSMVHVDDVARAHIFLLEYPDAKGRY-ICSSHTLTIQEMAEFLSAKYPEYPIPTV 284
            F      + + D        L+     G + + +    +I+E+ + +   Y    +   
Sbjct: 217 DF------LDMSDFLAIADLSLQEGRPTGVFNVSTGEGHSIKEVFD-VVLDYVGATLAEP 269

Query: 285 DSLAEIEGYRAPG-------SSSK--KLLDAGFRYNYGIDEMFDEAIQCCKEKGY 330
             +                   SK       G++      +     +    + G 
Sbjct: 270 VPVVA----PGADDVPSVVLDPSKTETEF--GWKAKVDFKDTITGQLAWYDKYGV 318

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* Length = 352

 Score = 72.2 bits (177), Expect = 2e-14
 Identities = 39/289 (13%), Positives = 79/289 (27%), Gaps = 70/289 (24%)

Query: 1   MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGAS 60
           M + K  + V G TG   + LI      G+ V   V      +   +++   L+ +P  +
Sbjct: 1   MAQQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVH---SLKGLIAEE---LQAIPNVT 54

Query: 61  ERLRIFHADLS-HPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSC 119
               +F   L  +    D    G        T       E          +    +  + 
Sbjct: 55  ----LFQGPLLNNVPLMDTLFEGAHLAFINTTS--QAGDE-----IAIGKD----LADAA 99

Query: 120 LKSGTVKRVVYTS-SNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERA 178
            ++GT++  +Y+S  + +++     V M                         K   E  
Sbjct: 100 KRAGTIQHYIYSSMPDHSLYGPWPAVPMWA----------------------PKFTVE-- 135

Query: 179 ALEFAEEHGLDLVTLIPSM-------VVGPFICPKFAGSVRSSLALILGNREEYGFLLNT 231
              +  + GL    +   +       +  P    +                       + 
Sbjct: 136 --NYVRQLGLPSTFVYAGIYNNNFTSLPYPLFQMELMPDGTFEWHAPFDP--------DI 185

Query: 232 SMVHVD---DVAR-AHIFLLEYPDA-KGRYIC-SSHTLTIQEMAEFLSA 274
            +  +D   DV         + P    G  I  +  TL+  ++    S 
Sbjct: 186 PLPWLDAEHDVGPALLQIFKDGPQKWNGHRIALTFETLSPVQVCAAFSR 234

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Length = 372

 Score = 71.3 bits (175), Expect = 4e-14
 Identities = 59/287 (20%), Positives = 109/287 (37%), Gaps = 48/287 (16%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSF--LKNLPGASERLR 64
           +V + G  GFI   L  R+L+                     D+    L +L    ER+ 
Sbjct: 26  KVLILGVNGFIGHHLSKRILETTDWEVF-----GM-------DMQTDRLGDLVK-HERMH 72

Query: 65  IFHADLSHP-DGFDAAIAGCTGVLH---VATPVDFEDKEPEEVITQRAINGTLGILKSCL 120
            F  D++   +  +  +  C  +L    +ATP  +  K+P  V  +      L I++S +
Sbjct: 73  FFEGDITINKEWVEYHVKKCDVILPLVAIATPATYV-KQPLRVF-ELDFEANLPIVRSAV 130

Query: 121 KSGTVKRVVYTSSNAAVF--YNDKDVDMMDETF-WSDVDYIRKLDSWGKSYAISKTLTER 177
           K G  K +V+ S+ + V+    D+  D       +  ++  R    W   YA SK L +R
Sbjct: 131 KYG--KHLVFPST-SEVYGMCADEQFDPDASALTYGPINKPR----W--IYACSKQLMDR 181

Query: 178 AALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLAL------ILGNRE--EYGFLL 229
               +    GL+     P   +GP +   +     SS  +      I+            
Sbjct: 182 VIWGYG-MEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGS 240

Query: 230 NT-SMVHVDDVARAHIFLLEYPD--AKGRYI---CSSHTLTIQEMAE 270
              +  +VDD   A + ++E  +  A G+       ++  +++E+A 
Sbjct: 241 QKRAFTYVDDGISALMKIIENSNGVATGKIYNIGNPNNNFSVRELAN 287

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Length = 369

 Score = 71.5 bits (175), Expect = 4e-14
 Identities = 43/292 (14%), Positives = 88/292 (30%), Gaps = 68/292 (23%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
            + +TG  GF+   L   L          V  +   E                       
Sbjct: 2   NIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKEEE---------------------- 39

Query: 67  HADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVK 126
                     ++A+     ++H+A     E    +E      ++    +L    ++    
Sbjct: 40  ---------LESALLKADFIVHLAGVNRPEH--DKEFS-LGNVSYLDHVLDILTRNTKKP 87

Query: 127 RVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH 186
            ++ +SS  A                         D+    Y  SK   E+   E+AEE+
Sbjct: 88  AILLSSSIQA-----------------------TQDN---PYGESKLQGEQLLREYAEEY 121

Query: 187 GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE--EYGFLLNTSMVHVDDVARAHI 244
           G  +       + G +  P +   + +    I  N E       +  ++ +VDD+     
Sbjct: 122 GNTVYIYRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQVNDRNVELTLNYVDDIVAEIK 181

Query: 245 FLLEYPDAKGRYIC---SSHTLTIQEMAEFLSA---KYPEYPIPTVDSLAEI 290
             +E        +    +   +T+ E+ + L        +  +P +D+L E 
Sbjct: 182 RAIEGTPTIENGVPTVPNVFKVTLGEIVDLLYKFKQSRLDRTLPKLDNLFEK 233

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362

 Score = 70.4 bits (173), Expect = 8e-14
 Identities = 47/303 (15%), Positives = 92/303 (30%), Gaps = 57/303 (18%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELD-----PEHRNSKDLSFLKNLPGASE 61
            + +TGG GF+ S L     ++       V   LD         N++  S          
Sbjct: 12  TILITGGAGFVGSNLAFHFQENHPKAKVVV---LDKFRSNTLFSNNRPSSLGHFKNLIGF 68

Query: 62  RLRIFHADLSHP-DGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCL 120
           +  +  AD+++P D           + H A   D      E V+ +      L +L+   
Sbjct: 69  KGEVIAADINNPLDLRRLEKLHFDYLFHQAAVSDTTMLNQELVM-KTNYQAFLNLLEIAR 127

Query: 121 KSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAAL 180
                 +V+Y SS A V Y +       +            +     Y  SK   +    
Sbjct: 128 SKK--AKVIYASS-AGV-YGN------TKAPNVVGKNESPEN----VYGFSKLCMDEFV- 172

Query: 181 EFAEEHGLDLVTL----------IPSMVVGPFICPKFAGSVRSSLALILGNREEYG---- 226
             +  +    V L                   +  + A    +   + L     +     
Sbjct: 173 -LSHSNDNVQVGLRYFNVYGPREFYKEKTASMV-LQLALGAMAFKEVKL-----FEFGEQ 225

Query: 227 ---FLLNTSMVHVDDVARAHIFLLEYPDAKGRY-ICSSHTLTIQEMAEFLSAKYPEYPIP 282
              F      V+++DV +A++  ++     G Y +  S   +  E+   L     ++ + 
Sbjct: 226 LRDF------VYIEDVIQANVKAMK-AQKSGVYNVGYSQARSYNEIVSILKEHLGDFKVT 278

Query: 283 TVD 285
            + 
Sbjct: 279 YIK 281

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} Length = 307

 Score = 68.8 bits (168), Expect = 2e-13
 Identities = 44/306 (14%), Positives = 92/306 (30%), Gaps = 59/306 (19%)

Query: 5   KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD--LSFLKNLPGASER 62
           + ++ + G TG I   ++   +  G      VR  +   +  +K+  +   ++L G    
Sbjct: 2   ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSL-GV--- 57

Query: 63  LRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKS 122
             +   D++  +    AI     V+  A  +  ED+                I+K+  ++
Sbjct: 58  -ILLEGDINDHETLVKAIKQVDIVICAAGRLLIEDQVK--------------IIKAIKEA 102

Query: 123 GTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEF 182
           G VK+   +                   F  DVD    ++   + +       + +    
Sbjct: 103 GNVKKFFPSE------------------FGLDVDRHDAVEPVRQVFEE-----KASIRRV 139

Query: 183 AEEHGLDLVTLIPSM---VVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDV 239
            E  G+    L            +    A        +ILG+          + V   DV
Sbjct: 140 IEAEGVPYTYLCCHAFTGYFLRNLAQLDATDPPRDKVVILGDGNVK-----GAYVTEADV 194

Query: 240 ARAHIFLLEYPDAKGRYIC---SSHTLTIQEMAEFLSA----KYPEYPIPTVDSLAEIEG 292
               I     P+   + +      + LT  E+             +  +     L +I+ 
Sbjct: 195 GTFTIRAANDPNTLNKAVHIRLPKNYLTQNEVIALWEKKIGKTLEKTYVSEEQVLKDIQE 254

Query: 293 YRAPGS 298
              P +
Sbjct: 255 SSFPHN 260

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A Length = 242

 Score = 67.5 bits (165), Expect = 3e-13
 Identities = 39/269 (14%), Positives = 70/269 (26%), Gaps = 58/269 (21%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGY--SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLR 64
            V + G +G     L+  +L+ G    VT   R +L  +               A + + 
Sbjct: 20  SVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDE-------------EAYKNVN 66

Query: 65  IFHADLSHPDGFDAAIAGCTGVLH-VATPVDFEDKEPEEVITQRAINGTLGILKSCLKSG 123
               D    D + +A  G       + T       E    + +   +  L   +     G
Sbjct: 67  QEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDR---DYVLKSAELAKAGG 123

Query: 124 TVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKS-YAISKTLTERAALEF 182
             K     SS  A                         D      Y   K   E    E 
Sbjct: 124 -CKHFNLLSSKGA-------------------------DKSSNFLYLQVKGEVEAKVEEL 157

Query: 183 AEEHGLDLVTLI-PSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVAR 241
                 D  ++  P +++      +    +       L          +   V V  V R
Sbjct: 158 ----KFDRYSVFRPGVLLCDRQESRPGEWLVRKFFGSL-----PDSWASGHSVPVVTVVR 208

Query: 242 AHIFLLEYPDAKGRYICSSHTLTIQEMAE 270
           A +  +  P  K   +  +    I ++ +
Sbjct: 209 AMLNNVVRPRDKQMELLENK--AIHDLGK 235

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 Length = 313

 Score = 68.0 bits (166), Expect = 4e-13
 Identities = 53/309 (17%), Positives = 100/309 (32%), Gaps = 54/309 (17%)

Query: 1   MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGAS 60
           M++ K RV + GGTG+I   ++   +  G+      R E+       + L + K L GA 
Sbjct: 1   MDK-KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQL-GA- 57

Query: 61  ERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCL 120
              ++  A L        A+     V+               ++ Q        ++++  
Sbjct: 58  ---KLIEASLDDHQRLVDALKQVDVVISALAG----GVLSHHILEQLK------LVEAIK 104

Query: 121 KSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAAL 180
           ++G +KR + +                   F  D D +      G    I K    RA  
Sbjct: 105 EAGNIKRFLPSE------------------FGMDPDIMEHALQPGSITFIDKRKVRRA-- 144

Query: 181 EFAEEHGLDLVTLIPSMVVGPFIC--PKFAGSVRSSL--ALILGNREEYGFLLNTSMVHV 236
              E   +    +  +M  G F     +  G +       LI G+            V  
Sbjct: 145 --IEAASIPYTYVSSNMFAGYFAGSLAQLDGHMMPPRDKVLIYGDGNVK-----GIWVDE 197

Query: 237 DDVARAHIFLLEYPDAKGRYI---CSSHTLTIQEMAEFLSA----KYPEYPIPTVDSLAE 289
           DDV    I  ++ P    + +      + L+ +E+ +           +  I + D LA+
Sbjct: 198 DDVGTYTIKSIDDPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYISSQDFLAD 257

Query: 290 IEGYRAPGS 298
           ++       
Sbjct: 258 MKDKSYEEK 266

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Length = 236

 Score = 64.0 bits (156), Expect = 4e-12
 Identities = 36/247 (14%), Positives = 66/247 (26%), Gaps = 59/247 (23%)

Query: 7   RVCVTGGTGFIASWLIMRLLD-HGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRI 65
            V + G  G IA  +I +L D      T   R    P   +                 +I
Sbjct: 25  NVLILGAGGQIARHVINQLADKQTIKQTLFAR---QPAKIHKP----------YPTNSQI 71

Query: 66  FHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTV 125
              D+ +      A+ G   V    T  D +                  ++ +      V
Sbjct: 72  IMGDVLNHAALKQAMQGQDIVYANLTGEDLDI-------------QANSVIAAMKACD-V 117

Query: 126 KRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE 185
           KR+++  S   ++                  ++   ++             R A +  E 
Sbjct: 118 KRLIFVLS-LGIYDE------------VPGKFVEWNNAVIGEPLKPF----RRAADAIEA 160

Query: 186 HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIF 245
            GL+   L P+                    L   N    G     ++V    VA     
Sbjct: 161 SGLEYTILRPAW---------LTDEDIIDYELTSRNEPFKG-----TIVSRKSVAALITD 206

Query: 246 LLEYPDA 252
           +++ P+ 
Sbjct: 207 IIDKPEK 213

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 Length = 308

 Score = 64.1 bits (156), Expect = 8e-12
 Identities = 54/304 (17%), Positives = 96/304 (31%), Gaps = 56/304 (18%)

Query: 5   KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLR 64
           + R+ + G TG+I   +    LD G+     VR      +     L       GA     
Sbjct: 4   RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGA----N 59

Query: 65  IFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGT 124
           I H  +        A+     V+     +  E +              + I+K+  + GT
Sbjct: 60  IVHGSIDDHASLVEAVKNVDVVISTVGSLQIESQ--------------VNIIKAIKEVGT 105

Query: 125 VKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAE 184
           VKR   +                   F +DVD +  ++   KS    K    RA     E
Sbjct: 106 VKRFFPSE------------------FGNDVDNVHAVE-PAKSVFEVKAKVRRAI----E 142

Query: 185 EHGLDLVTLIPSMVVGPF---ICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVAR 241
             G+    +  +   G F   +      +      +ILG+            V  +D+  
Sbjct: 143 AEGIPYTYVSSNCFAGYFLRSLAQAGLTAPPRDKVVILGDGNAR-----VVFVKEEDIGT 197

Query: 242 AHIFLLEYPDA--KGRYIC-SSHTLTIQEMAEFLSA----KYPEYPIPTVDSLAEIEGYR 294
             I  ++ P    K  Y+   ++TL++ E+             +  +P  + L  I    
Sbjct: 198 FTIKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEEEVLKLIADTP 257

Query: 295 APGS 298
            P +
Sbjct: 258 FPAN 261

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221

 Score = 62.7 bits (152), Expect = 9e-12
 Identities = 39/247 (15%), Positives = 70/247 (28%), Gaps = 56/247 (22%)

Query: 7   RVCVTGGTGFIASWLIMRLLDH-GYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRI 65
            + + G  G IA  L   LL +    +T   R     + R   ++          ER+ +
Sbjct: 7   YITILGAAGQIAQXLTATLLTYTDMHITLYGR---QLKTRIPPEII-------DHERVTV 56

Query: 66  FHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTV 125
                 +P   + A+     V   A                   +    I+K+  +   +
Sbjct: 57  IEGSFQNPGXLEQAVTNAEVVFVGAMESG---------------SDMASIVKALSRXN-I 100

Query: 126 KRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE 185
           +RV+  S        +  V +   TF          D+   SY   +    R A     E
Sbjct: 101 RRVIGVSMAGL--SGEFPVALEKWTF----------DNLPISYVQGE----RQARNVLRE 144

Query: 186 HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIF 245
             L+   L  + +        +                  G   N + V  + V +A   
Sbjct: 145 SNLNYTILRLTWLYNDPEXTDYE-------------LIPEGAQFNDAQVSREAVVKAIFD 191

Query: 246 LLEYPDA 252
           +L   D 
Sbjct: 192 ILHAADE 198

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Length = 286

 Score = 62.6 bits (152), Expect = 2e-11
 Identities = 59/332 (17%), Positives = 103/332 (31%), Gaps = 67/332 (20%)

Query: 5   KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLR 64
            G +   G  G+ A  L   L   G+ +  T R+                  P   E +R
Sbjct: 5   TGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRN------------------PDQMEAIR 45

Query: 65  IFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGT 124
              A+     G + ++ G T +L    P    D     +  Q A            ++  
Sbjct: 46  ASGAEPLLWPGEEPSLDGVTHLLISTAPDSGGDPVLAALGDQIA-----------ARAAQ 94

Query: 125 VKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAE 184
            + V Y S+  AV Y D D   +DET        R            +        ++  
Sbjct: 95  FRWVGYLST-TAV-YGDHDGAWVDETTPLTPTAAR-----------GRWRVMAEQ-QWQA 140

Query: 185 EHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHI 244
              L L     + + GP       G    S     G R         S +HV+D+A+   
Sbjct: 141 VPNLPLHVFRLAGIYGP-------GRGPFSKLGKGGIRRIIKPGQVFSRIHVEDIAQVLA 193

Query: 245 FLLEYPDAKGRY-ICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGS----- 298
             +  PD    Y +C    +  Q++  + +      P+P      + +      S     
Sbjct: 194 ASMARPDPGAVYNVCDDEPVPPQDVIAYAAELQ-GLPLPPAVDFDKADLTPMARSFYSEN 252

Query: 299 ---SSKKLLDA-GFRYNY-----GIDEMFDEA 321
               + ++ +  G R  Y     G++ +  +A
Sbjct: 253 KRVRNDRIKEELGVRLKYPNYRVGLEALQADA 284

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 215

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 49/277 (17%), Positives = 79/277 (28%), Gaps = 71/277 (25%)

Query: 1   MEEGKGRVCVTGGTGFIASWLIMRLLDHGY--SVTTTVRSELDPEHRNSKDLSFLKNLPG 58
           M     RV + G TG     L+ R+L       V    R  L    R    +  L  L  
Sbjct: 1   MHSTPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAEL-- 58

Query: 59  ASERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAI--NGTLGIL 116
                             D A   C G            +E       RA+  +  L + 
Sbjct: 59  ----------LPQLDGSIDTAFC-CLGTTIKEAG----SEE-----AFRAVDFDLPLAVG 98

Query: 117 KSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKS-YAISKTLT 175
           K  L+ G  +  +  S+  A                         D+     Y   K   
Sbjct: 99  KRALEMG-ARHYLVVSALGA-------------------------DAKSSIFYNRVKGEL 132

Query: 176 ERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSM-- 233
           E+A  E        L    PS++ GP    + A  + + +A           +L      
Sbjct: 133 EQALQEQGWPQ---LTIARPSLLFGPREEFRLAEILAAPIA----------RILPGKYHG 179

Query: 234 VHVDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAE 270
           +   D+ARA   L        R++ S     ++++ +
Sbjct: 180 IEACDLARALWRLALEEGKGVRFVESD---ELRKLGK 213

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.6 bits (151), Expect = 7e-11
 Identities = 52/399 (13%), Positives = 100/399 (25%), Gaps = 132/399 (33%)

Query: 8   VCVTGGTGFIASWLIMRLLDHGYSVTT---------TVRSELDPE----------HRNSK 48
           V + G  G   +W+ + +    Y V            +++   PE          ++   
Sbjct: 153 VLIDGVLGSGKTWVALDVCLS-YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211

Query: 49  DL----SFLKNLP----GASERLRIFHADLSHP---------------DGFDAAIAGC-- 83
           +         N+          LR       +                + F+     C  
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN---LSCKI 268

Query: 84  ---------TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCL--KSGTVKRVVYTS 132
                    T  L  AT            +T         +L   L  +   + R V T+
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE---VKSLLLKYLDCRPQDLPREVLTT 325

Query: 133 SN------AAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH 186
           +       A    +           W   D  + ++    +  I  +L     LE AE  
Sbjct: 326 NPRRLSIIAESIRDGLAT-------W---DNWKHVNCDKLTTIIESSL---NVLEPAEYR 372

Query: 187 GL--DLV-----TLIPSMVVG------PFICPKF--AGSVRSSLALILGNREEYGF--LL 229
            +   L        IP++++                    + SL              + 
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432

Query: 230 NTSMVHVDDVARAHIFLLE-Y------------PDAKGRYICS--SHTLTIQEMAE---- 270
               V +++    H  +++ Y            P    +Y  S   H L   E  E    
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492

Query: 271 ---------FLSAK------YPEYPIPTVDSLAEIEGYR 294
                    FL  K              +++L +++ Y+
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 4e-04
 Identities = 44/267 (16%), Positives = 77/267 (28%), Gaps = 76/267 (28%)

Query: 99  EPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVD--MMDETFWSDVD 156
            P + +    I+G LG  K+ +              A        V   M  + FW ++ 
Sbjct: 148 RPAKNVL---IDGVLGSGKTWV--------------ALDVCLSYKVQCKMDFKIFWLNLK 190

Query: 157 YIRKLDS-----WGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSV 211
                ++         Y I    T R+      +  +  +      +        +    
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL---LKSKPY---- 243

Query: 212 RSSLALILGN---REEY-GF------LLNTSMVHVDDV----ARAHIFL------LEYPD 251
            + L L+L N    + +  F      LL T    V D        HI L      L   +
Sbjct: 244 ENCL-LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 252 AKG--------------RYICSSHTLTIQEMAEFLS---AKYPEYPIPTVDSLAE-IEGY 293
            K               R + +++   +  +AE +    A +  +     D L   IE  
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE-- 360

Query: 294 RAPGSSSKKLLDAGFRYNYGIDEMFDE 320
               SS   L  A +R  +    +F  
Sbjct: 361 ----SSLNVLEPAEYRKMFDRLSVFPP 383

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 63/304 (20%), Positives = 108/304 (35%), Gaps = 61/304 (20%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRI 65
           RV + G  GFI + L  RLL    Y V       LD                        
Sbjct: 317 RVLILGVNGFIGNHLTERLLREDHYEVYG-----LDIGSDAISRFL-------NHPHFHF 364

Query: 66  FHADLS-HPDGFDAAIAGCTGVLH---VATPVDFEDKEPEEVITQRAINGTLGILKSCLK 121
              D+S H +  +  +  C  VL    +ATP+++  + P  V         L I++ C+K
Sbjct: 365 VEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEY-TRNPLRVFELDFE-ENLRIIRYCVK 422

Query: 122 SGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDV-DYIRKLDSWGKSYAISKTLTERAAL 180
               KR+++ S++    Y        DE   + +   + K   W   Y++SK L +R   
Sbjct: 423 YR--KRIIFPSTSEV--YGMCSDKYFDEDHSNLIVGPVNK-PRW--IYSVSKQLLDRVIW 475

Query: 181 EFAEEHGLDLVTLIPSMVVGPF-------------ICPKFAGSV--RSSLALILGNREEY 225
            + E+ GL      P   +GP                 +   ++   S + LI G +++ 
Sbjct: 476 AYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKR 535

Query: 226 GFLLNTSMVHVDDVARAHIFLLEYPDAKGRYICSSH---------TLTIQEMAEFLSAKY 276
            F        + D   A   ++E    +    C              +I+E+ E L A +
Sbjct: 536 CF------TDIRDGIEALYRIIENAGNR----CDGEIINIGNPENEASIEELGEMLLASF 585

Query: 277 PEYP 280
            ++P
Sbjct: 586 EKHP 589

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* Length = 343

 Score = 59.7 bits (145), Expect = 3e-10
 Identities = 49/222 (22%), Positives = 86/222 (38%), Gaps = 44/222 (19%)

Query: 1   MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVT-----TTVRSELDPEHRNSKDLSFLKN 55
           ME+ + R+ +TGG GF+ S L  +L+  G+ VT      T R               +++
Sbjct: 23  MEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRN------------VEH 70

Query: 56  LPGASERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRA-INGTLG 114
             G  E   + + D+  P   +        + H+A+P    +     + T +    GTL 
Sbjct: 71  WIG-HENFELINHDVVEPLYIE-----VDQIYHLASPASPPNYMYNPIKTLKTNTIGTLN 124

Query: 115 ILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTL 174
           +L    + G   R++  S++    Y D +V    E +W  V+ I         Y   K +
Sbjct: 125 MLGLAKRVG--ARLLLASTSEV--YGDPEVHPQSEDYWGHVNPIGP--RA--CYDEGKRV 176

Query: 175 TERAALEFAEEHGLDLV------TLIPSM------VVGPFIC 204
            E     + ++ G+++       T  P M      VV  FI 
Sbjct: 177 AETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFIL 218

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} Length = 321

 Score = 59.2 bits (143), Expect = 4e-10
 Identities = 40/314 (12%), Positives = 91/314 (28%), Gaps = 56/314 (17%)

Query: 5   KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLR 64
             ++ + GGTG+I  +++   L   +      R    P   +S   S        S  + 
Sbjct: 4   MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYAR----PLTPDSTPSSVQLREEFRSMGVT 59

Query: 65  IFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGT 124
           I   ++   +   + +     V+          +              + I+ +   +G 
Sbjct: 60  IIEGEMEEHEKMVSVLKQVDIVISALPFPMISSQ--------------IHIINAIKAAGN 105

Query: 125 VKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAE 184
           +KR + +                   F  + D I+ L  +           +R      E
Sbjct: 106 IKRFLPSD------------------FGCEEDRIKPLPPFESVLEK-----KRIIRRAIE 142

Query: 185 EHGLDLVTLIPSMVVG---PFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVAR 241
              L    +  +        ++        R+   +I G  E         + + +D+A+
Sbjct: 143 AAALPYTYVSANCFGAYFVNYLLHPSPHPNRNDDIVIYGTGETK-----FVLNYEEDIAK 197

Query: 242 AHIFLLEYPDAKGRYIC---SSHTLTIQEMAEFLSAKYPE----YPIPTVDSLAEIEGYR 294
             I +   P    R +      + ++  E+     AK         +P    +   +   
Sbjct: 198 YTIKVACDPRCCNRIVIYRPPKNIISQNELISLWEAKSGLSFKKVHMPDEQLVRLSQELP 257

Query: 295 APGSSSKKLLDAGF 308
            P +    +L + F
Sbjct: 258 QPQNIPVSILHSIF 271

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* Length = 346

 Score = 58.9 bits (142), Expect = 5e-10
 Identities = 53/334 (15%), Positives = 99/334 (29%), Gaps = 60/334 (17%)

Query: 1   MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGAS 60
           +   KGRV + G TGFI  ++    LD         R    P  R+       K L    
Sbjct: 6   VPSPKGRVLIAGATGFIGQFVATASLDAHRPTYILAR----PGPRSPSKAKIFKAL--ED 59

Query: 61  ERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCL 120
           +   I +  ++  +  +  +      + V+T            +   +I   + ++K+  
Sbjct: 60  KGAIIVYGLINEQEAMEKILKEHEIDIVVST------------VGGESILDQIALVKAMK 107

Query: 121 KSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAAL 180
             GT+KR + +                   F  DV+    ++     Y       +R   
Sbjct: 108 AVGTIKRFLPSE------------------FGHDVNRADPVEPGLNMYRE-----KRRVR 144

Query: 181 EFAEEHGLDLVTLIPSMVVG---PFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVD 237
           +  EE G+    +  + +                 +    I G+            V   
Sbjct: 145 QLVEESGIPFTYICCNSIASWPYYNNIHPSEVLPPTDFFQIYGDGNVK-----AYFVAGT 199

Query: 238 DVARAHIFLLEYPDAKGRYI---CSSHTLTIQEMAEFLSAKYPEY----PIPTVDSLAEI 290
           D+ +  +  ++      + +    S + L I E+A     K         +   D LA  
Sbjct: 200 DIGKFTMKTVDDVRTLNKSVHFRPSCNCLNINELASVWEKKIGRTLPRVTVTEDDLLAAA 259

Query: 291 EGYRAPGSSSKKLLDA----GFRYNYGIDEMFDE 320
                P S            G + N+ ID   D 
Sbjct: 260 GENIIPQSVVAAFTHDIFIKGCQVNFSIDGPEDV 293

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} Length = 516

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 51/330 (15%), Positives = 106/330 (32%), Gaps = 73/330 (22%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
            V +TG  G +   L  +L   G+ V   VR E                 P   +R    
Sbjct: 149 TVAITGSRGLVGRALTAQLQTGGHEVIQLVRKE-----------------PKPGKRF--- 188

Query: 67  HADLSHPDGFDAAIAGCTGVLHVA-TPVD--FEDKEPEEVITQRAINGTLGILKSCLKSG 123
                  +     + G   ++H+A  P+   F D   E +   R +  T  + +   +S 
Sbjct: 189 ---WDPLNPASDLLDGADVLVHLAGEPIFGRFNDSHKEAIRESR-VLPTKFLAELVAEST 244

Query: 124 TVKRVVYTSSNAAVFY-NDKDVDMMDETFWSDVDYIRKL-DSWGKSYAISKTLTERAALE 181
               ++  S++A  FY +D+  +++ E   S  D++ ++   W           E A   
Sbjct: 245 QCTTMI--SASAVGFYGHDRGDEILTEESESGDDFLAEVCRDW-----------EHATAP 291

Query: 182 FAEEHGLDLVTLIPSMVVGPF--ICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDV 239
            A + G  +  +   + +     + P       + L    G+   +      S + +DD+
Sbjct: 292 -ASDAGKRVAFIRTGVALSGRGGMLPLLKTLFSTGLGGKFGDGTSW-----FSWIAIDDL 345

Query: 240 ARAHIFLLEYPDAKGRY-ICSSHTLTIQEMAEFLSA-----KYPEY-PIPTV-------- 284
              +   +      G     + + ++    A+           P +  IP++        
Sbjct: 346 TDIYYRAIVDAQISGPINAVAPNPVS---NADMTKILATSMHRPAFIQIPSLGPKILLGS 402

Query: 285 DSLAEI--EGYRAPGSSSKKLLDAGFRYNY 312
               E+     R    +   L +    + Y
Sbjct: 403 QGAEELALASQRT---APAALENLSHTFRY 429

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Length = 357

 Score = 50.6 bits (121), Expect = 3e-07
 Identities = 37/156 (23%), Positives = 56/156 (35%), Gaps = 24/156 (15%)

Query: 4   GKGRVCVTGGTGFIASWLIMRLLD-----HGYSVTTTVRSELDPEHRNSKDLSFLKNLPG 58
           GK RV VTG TGF   WL + L        GYS        L      S     L     
Sbjct: 9   GK-RVFVTGHTGFKGGWLSLWLQTMGATVKGYS--------LTAPTVPS-----LFETAR 54

Query: 59  ASERLRIFHADLSHPDGFDAAIAGC--TGVLHVA--TPVDFEDKEPEEVITQRAINGTLG 114
            ++ ++    D+   +    +I       V H+A    V     EP E  +   + GT+ 
Sbjct: 55  VADGMQSEIGDIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYS-TNVMGTVY 113

Query: 115 ILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDET 150
           +L++    G VK VV  +S+      +      +  
Sbjct: 114 LLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENE 149

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} Length = 289

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 43/268 (16%), Positives = 91/268 (33%), Gaps = 62/268 (23%)

Query: 10  VTGGTGFIASWLIMRLLDHGYS-VTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHA 68
           +TG TG + + +  + + +        VR   + E          K       ++ +   
Sbjct: 5   LTGATGHLGTHITNQAIANHIDHFHIGVR---NVE----------KVPDDWRGKVSVRQL 51

Query: 69  DLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRV 128
           D  + +    A  G   V+ + +          + I +        ++ +  +SG V  +
Sbjct: 52  DYFNQESMVEAFKGMDTVVFIPSI----IHPSFKRIPE-----VENLVYAAKQSG-VAHI 101

Query: 129 VYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGL 188
           ++    A       +   M   F      +      G  Y     +  R A+ + +    
Sbjct: 102 IFIGYYAD---QHNNPFHMSPYFGYASRLLSTS---GIDYTY---V--RMAM-YMD---- 145

Query: 189 DLVTLIPSMVV-GPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLL 247
            L   +P ++     I P  AG  R                   + +  +D+AR  I ++
Sbjct: 146 PLKPYLPELMNMHKLIYP--AGDGR------------------INYITRNDIARGVIAII 185

Query: 248 EYPDAKGR-YICSSHTLTIQEMAEFLSA 274
           + PD  G+ Y+ S ++  ++E+A  LS 
Sbjct: 186 KNPDTWGKRYLLSGYSYDMKELAAILSE 213

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* Length = 286

 Score = 48.8 bits (117), Expect = 7e-07
 Identities = 42/271 (15%), Positives = 85/271 (31%), Gaps = 69/271 (25%)

Query: 10  VTGGTGFIASWLIMRLLDH--GYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH 67
           +TG TG +  ++I  L+       +   VR   +P           K    A++ + +  
Sbjct: 4   ITGATGQLGHYVIESLMKTVPASQIVAIVR---NPA----------KAQALAAQGITVRQ 50

Query: 68  ADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKR 127
           AD        +A+ G   +L +++       E  +   Q        ++ +   +G VK 
Sbjct: 51  ADYGDEAALTSALQGVEKLLLISSS------EVGQRAPQ-----HRNVINAAKAAG-VKF 98

Query: 128 VVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHG 187
           + YTS   A                         D+     A     TE+       + G
Sbjct: 99  IAYTSLLHA-------------------------DTSPLGLADEHIETEKM----LADSG 129

Query: 188 LDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLN--TSMVHVDDVARAHIF 245
           +    L             ++ +  +S    L +    G   +   +     D A A   
Sbjct: 130 IVYTLLRNGW---------YSENYLASAPAALEHGVFIGAAGDGKIASATRADYAAAAAR 180

Query: 246 LLEYPDAKGR-YICS-SHTLTIQEMAEFLSA 274
           ++     +G+ Y  +     T+ ++A  L+ 
Sbjct: 181 VISEAGHEGKVYELAGDSAWTLTQLAAELTK 211

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D Length = 287

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 28/129 (21%), Positives = 46/129 (35%), Gaps = 25/129 (19%)

Query: 10  VTGGTGFIASWLIMRLLDH--GYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH 67
           VTG TG +   +I  LL       +   VR   + E            L      +R  H
Sbjct: 5   VTGATGQLGGLVIQHLLKKVPASQIIAIVR---NVEK--------ASTLADQGVEVR--H 51

Query: 68  ADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKR 127
            D + P+    A AG + +L ++ P          ++          ++K+   +G VK 
Sbjct: 52  GDYNQPESLQKAFAGVSKLLFISGP---HYDNTLLIVQHAN------VVKAARDAG-VKH 101

Query: 128 VVYTSSNAA 136
           + YT    A
Sbjct: 102 IAYTGYAFA 110

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} Length = 330

 Score = 42.4 bits (101), Expect = 1e-04
 Identities = 51/288 (17%), Positives = 94/288 (32%), Gaps = 91/288 (31%)

Query: 10  VTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLS--FLKNLPGASERLRIFH 67
           + GG G+I S  + +L+D G SV       +D       +L       +    E  + ++
Sbjct: 6   ICGGAGYIGSHAVKKLVDEGLSVVV-----VD-------NLQTGHEDAIT---EGAKFYN 50

Query: 68  ADLSHPDGFDAAIA--GCTGVLHVA--TPVDFEDKEPEEVITQRA-----INGTLGILKS 118
            DL                 V+H A  + V         +          + G L +L+ 
Sbjct: 51  GDLRDKAFLRDVFTQENIEAVMHFAADSLV------GVSMEKPLQYYNNNVYGALCLLEV 104

Query: 119 CLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKS----YAISKTL 174
             +   V + ++ SS AA  Y + DVD++ E                 +    Y  +K  
Sbjct: 105 MDEFK-VDKFIF-SSTAAT-YGEVDVDLITEET-------------MTNPTNTYGETKLA 148

Query: 175 TERAALEFAEEHGLDLVTL--------IPSMVVG----------PFICPKFAGSVRSSLA 216
            E+    +++   L              P+ ++G          P +  + A   R  + 
Sbjct: 149 IEKMLHWYSQASNLRYKIFRYFNVAGATPNGIIGEDHRPETHLIPLVL-QVALGQREKIM 207

Query: 217 LILGN----------REEYGFLLNTSMVHVDDVARAHIFLLEYPDAKG 254
            + G+          R +Y        +HV+D+  AH   L+     G
Sbjct: 208 -MFGDDYNTPDGTCIR-DY--------IHVEDLVAAHFLGLKDLQNGG 245

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Length = 699

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 31/148 (20%), Positives = 51/148 (34%), Gaps = 34/148 (22%)

Query: 1   MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTT---VRSELDPEHRNSKDLSFLKNLP 57
            E     V VTGG G+I S  ++ L+++GY          S  D   R       L+ L 
Sbjct: 7   SESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVAR-------LEVLT 59

Query: 58  GASERLRIFHADLSHPDGFDAAIA--GCTGVLH----------VATPVDFEDKEPEEVIT 105
                +  +  DL    G +          V+H             P+ +          
Sbjct: 60  K--HHIPFYEVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNN------ 111

Query: 106 QRAINGTLGILKSCLKSGTVKRVVYTSS 133
              I GT+ +L+   +   V + V++SS
Sbjct: 112 ---ILGTVVLLELMQQYN-VSKFVFSSS 135

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} Length = 341

 Score = 39.7 bits (94), Expect = 8e-04
 Identities = 42/163 (25%), Positives = 65/163 (39%), Gaps = 34/163 (20%)

Query: 3   EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSF--LKNLPGAS 60
             KG + VTGG G+I S   + LL HGY V        D    NSK  +   ++ + G  
Sbjct: 3   STKGTILVTGGAGYIGSHTAVELLAHGYDVVI-----AD-NLVNSKREAIARIEKITG-- 54

Query: 61  ERLRIFHADLSHPDGFDAAIA--GCTGVLH----------VATPVDFEDKEPEEVITQRA 108
           +       D+S              T  +H          VA P+++             
Sbjct: 55  KTPAFHETDVSDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNN--------- 105

Query: 109 INGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETF 151
           ++  L +L+   +   VKR+V++SS A V Y   +   +DETF
Sbjct: 106 LDSLLSLLRVMRERA-VKRIVFSSS-ATV-YGVPERSPIDETF 145

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	331
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	100.0
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	100.0
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	100.0
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	100.0
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	100.0
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	100.0
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	100.0
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	100.0
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	100.0
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	100.0
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	100.0
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	100.0
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	100.0
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	100.0
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	100.0
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	100.0
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	100.0
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	100.0
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	100.0
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	100.0
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	100.0
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	100.0
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	100.0
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	100.0
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	100.0
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	100.0
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	100.0
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	100.0
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	100.0
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	100.0
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	100.0
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	100.0
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	100.0
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	100.0
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	100.0
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	100.0
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	100.0
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	100.0
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	100.0
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	100.0
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	100.0
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	100.0
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	100.0
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	100.0
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	100.0
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	100.0
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	100.0
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	100.0
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	100.0
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	100.0
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	100.0
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	100.0
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	100.0
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	100.0
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	100.0
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	100.0
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	100.0
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	100.0
4f6c_A	427	AUSA reductase domain protein; thioester reductase	100.0
4f6l_B	508	AUSA reductase domain protein; thioester reductase	100.0
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	100.0
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	100.0
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	100.0
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	100.0
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	100.0
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	100.0
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	100.0
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	100.0
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	100.0
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	100.0
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	100.0
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	100.0
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	100.0
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	99.98
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	99.97
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	99.97
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	99.97
1xq6_A	253	Unknown protein; structural genomics, protein stru	99.97
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	99.97
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	99.97
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	99.96
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	99.96
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	99.96
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	99.96
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	99.95
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	99.95
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	99.95
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	99.94
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	99.94
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	99.94
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	99.94
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	99.94
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	99.94
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	99.94
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	99.94
1spx_A	278	Short-chain reductase family member (5L265); paral	99.94
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	99.94
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	99.93
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	99.93
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	99.93
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	99.93
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	99.93
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	99.93
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.93
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	99.93
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	99.93
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	99.93
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	99.93
1xq1_A	266	Putative tropinone reducatse; structural genomics,	99.93
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	99.93
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	99.93
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	99.93
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	99.92
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	99.92
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	99.92
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	99.92
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	99.92
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	99.92
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	99.92
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	99.92
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	99.92
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	99.92
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	99.92
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	99.92
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	99.92
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	99.92
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	99.92
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	99.92
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	99.92
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	99.92
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.92
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	99.92
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	99.92
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	99.92
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	99.92
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	99.92
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	99.92
3rih_A	293	Short chain dehydrogenase or reductase; structural	99.92
4dqx_A	277	Probable oxidoreductase protein; structural genomi	99.92
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	99.91
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	99.91
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	99.91
3imf_A	257	Short chain dehydrogenase; structural genomics, in	99.91
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	99.91
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	99.91
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	99.91
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	99.91
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	99.91
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	99.91
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	99.91
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	99.91
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	99.91
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	99.91
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	99.91
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	99.91
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	99.91
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	99.91
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	99.91
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	99.91
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	99.91
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	99.91
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	99.91
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	99.91
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	99.91
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	99.91
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	99.91
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	99.91
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	99.91
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	99.91
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	99.91
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	99.91
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	99.91
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	99.91
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	99.91
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	99.91
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	99.91
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	99.91
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	99.91
3cxt_A	291	Dehydrogenase with different specificities; rossma	99.9
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	99.9
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	99.9
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	99.9
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	99.9
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	99.9
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	99.9
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.9
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	99.9
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	99.9
1xkq_A	280	Short-chain reductase family member (5D234); parra	99.9
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	99.9
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	99.9
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	99.9
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	99.9
4e4y_A	244	Short chain dehydrogenase family protein; structur	99.9
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	99.9
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	99.9
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	99.9
1xhl_A	297	Short-chain dehydrogenase/reductase family member	99.9
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	99.9
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	99.9
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	99.9
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	99.9
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	99.9
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	99.9
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	99.9
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	99.9
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	99.9
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	99.9
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	99.9
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	99.9
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	99.9
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.9
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	99.9
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	99.9
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	99.9
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	99.9
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	99.9
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	99.9
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	99.9
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	99.9
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	99.9
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	99.9
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	99.89
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	99.89
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	99.89
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	99.89
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	99.89
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	99.89
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	99.89
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	99.89
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	99.89
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	99.89
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	99.89
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	99.89
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	99.89
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	99.89
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	99.89
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	99.89
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	99.89
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	99.89
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	99.89
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	99.89
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	99.89
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	99.89
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	99.89
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	99.89
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	99.89
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	99.89
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	99.89
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	99.89
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	99.89
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	99.89
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	99.89
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	99.88
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	99.88
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	99.88
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	99.88
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	99.88
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	99.88
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	99.88
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	99.88
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	99.88
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	99.88
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	99.88
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	99.87
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	99.87
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	99.87
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	99.87
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.87
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	99.87
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	99.87
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	99.87
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	99.87
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	99.87
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	99.87
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	99.87
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	99.87
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	99.86
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	99.85
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	99.85
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	99.85
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	99.85
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	99.85
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	99.84
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	99.84
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	99.84
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	99.84
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	99.84
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	99.83
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	99.83
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	99.83
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	99.82
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	99.82
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	99.82
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	99.82
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	99.81
1d7o_A	297	Enoyl-[acyl-carrier protein] reductase (NADH) PRE;	99.81
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	99.8
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	99.75
2ptg_A	319	Enoyl-acyl carrier reductase; apicomplexa, enoyl (	99.73
2o2s_A	315	Enoyl-acyl carrier reductase; enoyl reductase, tri	99.73
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	99.7
3lt0_A	329	Enoyl-ACP reductase; triclosan, triclosan variant,	99.69
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	99.69
2pff_A	1688	Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl	99.61
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	99.58
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	99.55
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	99.54
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.52
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	99.48
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	99.46
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	99.44
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	99.43
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	99.41
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	99.35
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.24
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	99.19
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	99.11
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	99.08
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	99.05
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.88
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	98.81
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	98.78
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	98.73
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.72
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	98.69
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.65
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	98.65
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	98.63
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	98.62
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.52
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	98.46
4ggo_A	401	Trans-2-enoyl-COA reductase; rossmann fold, oxidor	98.43
1id1_A	153	Putative potassium channel protein; RCK domain, E.	98.42
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	98.41
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	98.4
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	98.35
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.23
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	98.21
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	98.19
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.17
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	98.11
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	98.08
3tl2_A	315	Malate dehydrogenase; center for structural genomi	98.08
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	98.07
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	98.06
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	98.02
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	97.96
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	97.95
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	97.94
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	97.91
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	97.9
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	97.88
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	97.84
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	97.81
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	97.79
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	97.78
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	97.77
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	97.76
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	97.75
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	97.74
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	97.74
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	97.73
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	97.71
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	97.71
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	97.71
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	97.7
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.69
1p9o_A	313	Phosphopantothenoylcysteine synthetase; ligase; 2.	97.68
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	97.67
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	97.65
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	97.65
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.64
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	97.64
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	97.61
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	97.59
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	97.58
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	97.56
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	97.54
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	97.54
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	97.54
4g65_A	461	TRK system potassium uptake protein TRKA; structur	97.54
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.53
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	97.53
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	97.52
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	97.52
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	97.5
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.48
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	97.47
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	97.42
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	97.37
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	97.37
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	97.37
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	97.34
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	97.34
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	97.33
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	97.33
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	97.32
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.29
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.26
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	97.25
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	97.24
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	97.22
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	97.21
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	97.21
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	97.19
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.17
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	97.16
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	97.16
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	97.14
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	97.14
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	97.12
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	97.12
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	97.12
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	97.1
1lnq_A	336	MTHK channels, potassium channel related protein;	97.1
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	97.1
4eye_A	342	Probable oxidoreductase; structural genomics, niai	97.09
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	97.09
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	97.09
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	97.09
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	97.08
3gms_A	340	Putative NADPH:quinone reductase; structural genom	97.06
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	97.04
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.03
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	97.01
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	97.0
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	97.0
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	96.99
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	96.98
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	96.98
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	96.98
3gxh_A	157	Putative phosphatase (DUF442); YP_001181608.1, str	96.97
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	96.96
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.94
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	96.92
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	96.89
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	96.86
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	96.86
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	96.86
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	96.85
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	96.83
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	96.83
3qha_A	296	Putative oxidoreductase; seattle structural genomi	96.82
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	96.81
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	96.8
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	96.79
3ax6_A	380	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.78
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	96.78
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	96.77
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	96.76
1kjq_A	391	GART 2, phosphoribosylglycinamide formyltransferas	96.76
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	96.73
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	96.73
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	96.72
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.71
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	96.7
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	96.69
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	96.67
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	96.67
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	96.66
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	96.65
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	96.65
3l07_A	285	Bifunctional protein fold; structural genomics, ID	96.63
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	96.63
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	96.62
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	96.62
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	96.61
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	96.61
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	96.59
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	96.59
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	96.58
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.58
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	96.56
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	96.56
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	96.55
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	96.55
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.55
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	96.55
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	96.54
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	96.53
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	96.51
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	96.5
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	96.49
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	96.49
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	96.48
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	96.48
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	96.47
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	96.47
2dwc_A	433	PH0318, 433AA long hypothetical phosphoribosylglyc	96.47
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	96.46
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	96.45
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.45
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	96.44
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	96.43
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	96.43
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	96.43
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	96.42
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	96.41
2duw_A	145	Putative COA-binding protein; ligand binding prote	96.4

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=100.00  E-value=5.1e-50  Score=353.15  Aligned_cols=324  Identities=45%  Similarity=0.828  Sum_probs=241.4

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |..++|+|||||||||||++|+++|+++|++|++++|+.     ....+...+.++.....+++++.+|+.|.+++.+++
T Consensus         1 ~~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~   75 (337)
T 2c29_D            1 MGSQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDP-----TNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAI   75 (337)
T ss_dssp             -----CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCT-----TCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHH
T ss_pred             CCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCc-----chhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHH
Confidence            777788999999999999999999999999999999987     322222222122111136889999999999999999


Q ss_pred             cCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhh
Q 020104           81 AGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRK  160 (331)
Q Consensus        81 ~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~  160 (331)
                      +++|+|||+|+.......++.+..+++|+.++.+++++|++.+.++||||+||.++++.......+++|+++...+...+
T Consensus        76 ~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~  155 (337)
T 2c29_D           76 KGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRA  155 (337)
T ss_dssp             TTCSEEEECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSCSSSCCSEECTTCCCCHHHHHH
T ss_pred             cCCCEEEEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhcccCCCCCcccCcccCCchhhhcc
Confidence            99999999998765443455446899999999999999998754789999999885543333345678887655444333


Q ss_pred             cCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHHHHH
Q 020104          161 LDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVA  240 (331)
Q Consensus       161 ~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a  240 (331)
                      ..+|.++|+.+|.++|.++..++.+++++++++||+++|||+........+........+....+......+|+|++|+|
T Consensus       156 ~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~v~Dva  235 (337)
T 2c29_D          156 KKMTAWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLC  235 (337)
T ss_dssp             HCCTTHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECEEESCCSCSSCCHHHHHHTHHHHTCGGGHHHHTEEEEEEHHHHH
T ss_pred             cCCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCCccccccCCCCEEEHHHHH
Confidence            33456789999999999999988778999999999999999865443332222212234443333322234699999999


Q ss_pred             HHHHHhhcCCCCCceEEEeccccCHHHHHHHHHhhCCCCCCCCccCCccc-cCCcCcccCcHHHHHcCCccccChhhhHH
Q 020104          241 RAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEI-EGYRAPGSSSKKLLDAGFRYNYGIDEMFD  319 (331)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~~~lg~~~~~~~~e~i~  319 (331)
                      ++++++++++..++.|+++++.+|++|+++.+.+.++...++.  .+... .......+|++|++.|||+|+++++|+++
T Consensus       236 ~a~~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~d~~k~~~lG~~p~~~l~e~l~  313 (337)
T 2c29_D          236 NAHIYLFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPT--EFKGVDENLKSVCFSSKKLTDLGFEFKYSLEDMFT  313 (337)
T ss_dssp             HHHHHHHHCTTCCEEEEECCEEEEHHHHHHHHHHHCTTSCCCS--CCTTCCTTCCCCEECCHHHHHHTCCCCCCHHHHHH
T ss_pred             HHHHHHhcCcccCceEEEeCCCCCHHHHHHHHHHHCCCccCCC--CCCcccCCCccccccHHHHHHcCCCcCCCHHHHHH
Confidence            9999999877667788888778999999999999887544443  22221 22345678999998899999999999999


Q ss_pred             HHHHHHHHcCCC
Q 020104          320 EAIQCCKEKGYL  331 (331)
Q Consensus       320 ~~~~~~~~~~~~  331 (331)
                      ++++|++++|.+
T Consensus       314 ~~~~~~~~~~~~  325 (337)
T 2c29_D          314 GAVDTCRAKGLL  325 (337)
T ss_dssp             HHHHHHHHTTSS
T ss_pred             HHHHHHHHcCCC
Confidence            999999988764

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=100.00  E-value=1.3e-48  Score=342.09  Aligned_cols=320  Identities=58%  Similarity=1.039  Sum_probs=233.6

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEec-CCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVR-SELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      +|+|||||||||||++++++|+++|++|++++| ++     ........+..+.....+++++.+|+.|.+++.++++++
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   75 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADP-----ERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGC   75 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC---------CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHTTC
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCc-----cchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHcCC
Confidence            368999999999999999999999999999998 54     111111111111111135788999999999999999999


Q ss_pred             cEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhc-CCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcC
Q 020104           84 TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKS-GTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLD  162 (331)
Q Consensus        84 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~  162 (331)
                      |+|||+|+.......++....+++|+.++.+++++|++. + +++|||+||.++++.......+++|+++...+...+..
T Consensus        76 d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~-~~~iV~~SS~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  154 (322)
T 2p4h_X           76 VGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKT-VKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVK  154 (322)
T ss_dssp             SEEEECCCCC--------CHHHHHHHHHHHHHHHHHTTCSS-CCEEEEEEEGGGTSCSSSCCSEECTTCCCCHHHHHHHC
T ss_pred             CEEEEcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCC-ccEEEEeccHHHcccCCCCCeecCCccccchhhhcccC
Confidence            999999986543333443358999999999999999988 6 89999999988654333334577888765544333322


Q ss_pred             CCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHHHHHHH
Q 020104          163 SWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARA  242 (331)
Q Consensus       163 ~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~  242 (331)
                      +..++|+.+|.++|.++..++.+++++++++||+++|||.........+........+....++. ..++|+|++|+|++
T Consensus       155 p~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~i~v~Dva~a  233 (322)
T 2p4h_X          155 PFGWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGV-TRFHMVHVDDVARA  233 (322)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCCSSSCCHHHHHHTHHHHSCGGGCCE-EEEEEEEHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCCCCCCCchHHHHHHHHhCCCccCcC-CCcCEEEHHHHHHH
Confidence            22337999999999999998887899999999999999986543332222222233444333333 33589999999999


Q ss_pred             HHHhhcCCCCCceEEEeccccCHHHHHHHHHhhCCCCCCCCccCCccccCCcCcccCcHHHHHcCCccccChhhhHHHHH
Q 020104          243 HIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSSKKLLDAGFRYNYGIDEMFDEAI  322 (331)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lg~~~~~~~~e~i~~~~  322 (331)
                      ++.+++++...|.||++++.+|+.|+++.+.+..+...++....+..........+|++|++.|||+|+++++|+|++++
T Consensus       234 ~~~~~~~~~~~g~~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~~~~~l~~~~  313 (322)
T 2p4h_X          234 HIYLLENSVPGGRYNCSPFIVPIEEMSQLLSAKYPEYQILTVDELKEIKGARLPDLNTKKLVDAGFDFKYTIEDMFDDAI  313 (322)
T ss_dssp             HHHHHHSCCCCEEEECCCEEEEHHHHHHHHHHHCTTSCCCCTTTTTTCCCEECCEECCHHHHHTTCCCCCCHHHHHHHHH
T ss_pred             HHHHhhCcCCCCCEEEcCCCCCHHHHHHHHHHhCCCCCCCCCccccCCCCCcceecccHHHHHhCCccCCCHHHHHHHHH
Confidence            99999876556678887888999999999999887544443100221111245778999997799999999999999999


Q ss_pred             HHHHHcCCC
Q 020104          323 QCCKEKGYL  331 (331)
Q Consensus       323 ~~~~~~~~~  331 (331)
                      +|++++|.+
T Consensus       314 ~~~~~~~~~  322 (322)
T 2p4h_X          314 QCCKEKGYL  322 (322)
T ss_dssp             HHHHHHTCC
T ss_pred             HHHHhcCCC
Confidence            999998875

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=100.00  E-value=3.4e-49  Score=348.05  Aligned_cols=320  Identities=42%  Similarity=0.713  Sum_probs=229.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      |+|+|||||||||||++|+++|+++|++|++++|+..     .......+..+. ...+++++.+|+.|.+++.++++++
T Consensus         8 ~~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~-----~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~   81 (338)
T 2rh8_A            8 GKKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPD-----NQKKVSHLLELQ-ELGDLKIFRADLTDELSFEAPIAGC   81 (338)
T ss_dssp             -CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTT-----CTTTTHHHHHHG-GGSCEEEEECCTTTSSSSHHHHTTC
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcc-----hhhhHHHHHhcC-CCCcEEEEecCCCChHHHHHHHcCC
Confidence            4678999999999999999999999999999999862     221111111111 1146889999999999999999999


Q ss_pred             cEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCC--CCcccCCCCCChhhhhhc
Q 020104           84 TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKD--VDMMDETFWSDVDYIRKL  161 (331)
Q Consensus        84 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~--~~~~~E~~~~~~~~~~~~  161 (331)
                      |+|||+|+.......++..+.+++|+.++.+++++|++.+.++||||+||.+++++.+..  ..+++|+++...+...+.
T Consensus        82 D~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~  161 (338)
T 2rh8_A           82 DFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSA  161 (338)
T ss_dssp             SEEEEESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHTCSCCCCCTTTTTCC------
T ss_pred             CEEEEeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeecCCcCCCCcccChhhccchhhcccc
Confidence            999999987654333444358999999999999999987437899999998754322111  137788875433322222


Q ss_pred             CCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccC-------CCccce
Q 020104          162 DSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFL-------LNTSMV  234 (331)
Q Consensus       162 ~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i  234 (331)
                      .++.++|+.+|.++|.+++.++++++++++++||+++|||+........+..+.....+....++..       +.++|+
T Consensus       162 ~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i  241 (338)
T 2rh8_A          162 KPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVSIA  241 (338)
T ss_dssp             -CCCCCCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCCSSSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHSSEEEE
T ss_pred             CCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCccccccccccccccCcccEE
Confidence            2223469999999999999988778999999999999999866544333332222233432222210       123899


Q ss_pred             eHHHHHHHHHHhhcCCCCCceEEEeccccCHHHHHHHHHhhCCCCCCCCccCCccccCCcCcccCcHHHHHcCCccccCh
Q 020104          235 HVDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSSKKLLDAGFRYNYGI  314 (331)
Q Consensus       235 ~v~D~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lg~~~~~~~  314 (331)
                      |++|+|++++.+++++..++.||++++.+|+.|+++.+.+..+...+|.  .+..........+|++|++.|||+|++++
T Consensus       242 ~v~Dva~a~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~d~~k~~~lG~~p~~~l  319 (338)
T 2rh8_A          242 HVEDVCRAHIFVAEKESASGRYICCAANTSVPELAKFLSKRYPQYKVPT--DFGDFPPKSKLIISSEKLVKEGFSFKYGI  319 (338)
T ss_dssp             EHHHHHHHHHHHHHCTTCCEEEEECSEEECHHHHHHHHHHHCTTSCCCC--CCTTSCSSCSCCCCCHHHHHHTCCCSCCH
T ss_pred             EHHHHHHHHHHHHcCCCcCCcEEEecCCCCHHHHHHHHHHhCCCCCCCC--CCCCCCcCcceeechHHHHHhCCCCCCCH
Confidence            9999999999999877667789988778999999999999887544443  22222222237889999977999999999


Q ss_pred             hhhHHHHHHHHHHcCCC
Q 020104          315 DEMFDEAIQCCKEKGYL  331 (331)
Q Consensus       315 ~e~i~~~~~~~~~~~~~  331 (331)
                      +|+|+++++|++++|.+
T Consensus       320 ~~gl~~~~~~~~~~~~~  336 (338)
T 2rh8_A          320 EEIYDESVEYFKAKGLL  336 (338)
T ss_dssp             HHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHcCCC
Confidence            99999999999998764

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=100.00  E-value=1.5e-47  Score=333.66  Aligned_cols=292  Identities=17%  Similarity=0.181  Sum_probs=234.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      |+|+|||||||||||++|+++|+++|++|++++|++     .... +          .+++++.+|+. .+++.++++++
T Consensus         1 M~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~-----~~~~-~----------~~~~~~~~Dl~-~~~~~~~~~~~   63 (311)
T 3m2p_A            1 MSLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSI-----GNKA-I----------NDYEYRVSDYT-LEDLINQLNDV   63 (311)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCC-----C----------------CCEEEECCCC-HHHHHHHTTTC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCC-----Cccc-C----------CceEEEEcccc-HHHHHHhhcCC
Confidence            357999999999999999999999999999999985     2211 1          26899999999 99999999999


Q ss_pred             cEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCC
Q 020104           84 TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDS  163 (331)
Q Consensus        84 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~  163 (331)
                      |+|||+|+.....  ++. ..+++|+.++.+++++|++.+ +++|||+||.++|+  .....+++|+++         ..
T Consensus        64 d~Vih~a~~~~~~--~~~-~~~~~n~~~~~~ll~a~~~~~-~~r~v~~SS~~vyg--~~~~~~~~E~~~---------~~  128 (311)
T 3m2p_A           64 DAVVHLAATRGSQ--GKI-SEFHDNEILTQNLYDACYENN-ISNIVYASTISAYS--DETSLPWNEKEL---------PL  128 (311)
T ss_dssp             SEEEECCCCCCSS--SCG-GGTHHHHHHHHHHHHHHHHTT-CCEEEEEEEGGGCC--CGGGCSBCTTSC---------CC
T ss_pred             CEEEEccccCCCC--ChH-HHHHHHHHHHHHHHHHHHHcC-CCEEEEEccHHHhC--CCCCCCCCCCCC---------CC
Confidence            9999999976644  555 889999999999999999998 89999999999985  444567888875         35


Q ss_pred             CCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHH-HhCCCccc-ccCCC-ccceeHHHHH
Q 020104          164 WGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLAL-ILGNREEY-GFLLN-TSMVHVDDVA  240 (331)
Q Consensus       164 ~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~-~~~i~v~D~a  240 (331)
                      |.+.|+.+|..+|++++.++.+++++++++||+.+||++..+.  ..+..+... ..+....+ +.+.. ++|+|++|+|
T Consensus       129 p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~v~Dva  206 (311)
T 3m2p_A          129 PDLMYGVSKLACEHIGNIYSRKKGLCIKNLRFAHLYGFNEKNN--YMINRFFRQAFHGEQLTLHANSVAKREFLYAKDAA  206 (311)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHSCCEEEEEEECEEECSCC--C--CHHHHHHHHHHTCCCEEESSBCCCCEEEEEHHHHH
T ss_pred             CCchhHHHHHHHHHHHHHHHHHcCCCEEEEeeCceeCcCCCCC--CHHHHHHHHHHcCCCeEEecCCCeEEceEEHHHHH
Confidence            6789999999999999999998999999999999999987643  234444433 34544333 44444 7999999999


Q ss_pred             HHHHHhhcCCCCCceEEEe-ccccCHHHHHHHHHhhCCCCCCCCccCCccccCCcCcccCcHHH-HHcCCccccChhhhH
Q 020104          241 RAHIFLLEYPDAKGRYICS-SHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSSKKL-LDAGFRYNYGIDEMF  318 (331)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~lg~~~~~~~~e~i  318 (331)
                      ++++.+++++..+++||++ ++.+|+.|+++.+.+.+|....................+|++|+ +.|||+|+++++++|
T Consensus       207 ~a~~~~~~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l  286 (311)
T 3m2p_A          207 KSVIYALKQEKVSGTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPNANEGIHSSYMDSSKAKELLDFSTDYNFATAV  286 (311)
T ss_dssp             HHHHHHTTCTTCCEEEEECCSCEECHHHHHHHHHHHTTCTTCEEECSSSBCCSCCCBCBCCHHHHHHSCCCCSCCHHHHH
T ss_pred             HHHHHHHhcCCCCCeEEeCCCCcccHHHHHHHHHHHhCCCCcceecCCCCCCCcCceecCHHHHHHHhCCCcccCHHHHH
Confidence            9999999988778899975 67899999999999999832211100110223456788999999 779999999999999


Q ss_pred             HHHHHHHHHcC
Q 020104          319 DEAIQCCKEKG  329 (331)
Q Consensus       319 ~~~~~~~~~~~  329 (331)
                      +++++|+++++
T Consensus       287 ~~~~~~~~~~~  297 (311)
T 3m2p_A          287 EEIHLLMRGLD  297 (311)
T ss_dssp             HHHHHHHCC--
T ss_pred             HHHHHHHHhcc
Confidence            99999998765

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=100.00  E-value=2.2e-47  Score=337.61  Aligned_cols=306  Identities=17%  Similarity=0.185  Sum_probs=233.4

Q ss_pred             CCCCceEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH
Q 020104            2 EEGKGRVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         2 ~~~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      ..++|+|||||||||||++|+++|+++|  ++|++++|...      ......+.... ..++++++.+|+.|.+++.++
T Consensus        21 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~------~~~~~~l~~~~-~~~~~~~~~~Dl~d~~~~~~~   93 (346)
T 4egb_A           21 QSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTY------SGNLNNVKSIQ-DHPNYYFVKGEIQNGELLEHV   93 (346)
T ss_dssp             ---CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCT------TCCGGGGTTTT-TCTTEEEEECCTTCHHHHHHH
T ss_pred             ccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEecccc------ccchhhhhhhc-cCCCeEEEEcCCCCHHHHHHH
Confidence            3456899999999999999999999999  67777777641      11112222211 126899999999999999999


Q ss_pred             hcC--ccEEEEecccCCCC--CCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCCh
Q 020104           80 IAG--CTGVLHVATPVDFE--DKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDV  155 (331)
Q Consensus        80 ~~~--~d~Vih~a~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~  155 (331)
                      +++  +|+|||+|+.....  ..++. ..+++|+.++.+++++|++.+ +++|||+||.++|+. .....+++|+++   
T Consensus        94 ~~~~~~d~Vih~A~~~~~~~~~~~~~-~~~~~nv~~~~~ll~a~~~~~-~~~~v~~SS~~vy~~-~~~~~~~~E~~~---  167 (346)
T 4egb_A           94 IKERDVQVIVNFAAESHVDRSIENPI-PFYDTNVIGTVTLLELVKKYP-HIKLVQVSTDEVYGS-LGKTGRFTEETP---  167 (346)
T ss_dssp             HHHHTCCEEEECCCCC---------C-HHHHHHTHHHHHHHHHHHHST-TSEEEEEEEGGGGCC-CCSSCCBCTTSC---
T ss_pred             HhhcCCCEEEECCcccchhhhhhCHH-HHHHHHHHHHHHHHHHHHhcC-CCEEEEeCchHHhCC-CCcCCCcCCCCC---
Confidence            986  99999999976532  23444 889999999999999999998 899999999999963 234568888885   


Q ss_pred             hhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHH-HHhCCCcc-cccCCC-cc
Q 020104          156 DYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLA-LILGNREE-YGFLLN-TS  232 (331)
Q Consensus       156 ~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~-~~  232 (331)
                            ..|.+.|+.+|..+|++++.++.+++++++++||+.+|||+....  ..+..+.. ...+.+.. ++.+.. ++
T Consensus       168 ------~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (346)
T 4egb_A          168 ------LAPNSPYSSSKASADMIALAYYKTYQLPVIVTRCSNNYGPYQYPE--KLIPLMVTNALEGKKLPLYGDGLNVRD  239 (346)
T ss_dssp             ------CCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTT--SHHHHHHHHHHTTCCCEEETTSCCEEC
T ss_pred             ------CCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeecceeCcCCCcc--chHHHHHHHHHcCCCceeeCCCCeEEe
Confidence                  356789999999999999999988899999999999999986542  23334433 33444433 344444 79


Q ss_pred             ceeHHHHHHHHHHhhcCCCCCceEEEe-ccccCHHHHHHHHHhhCCCCCCCCccCCccccCCcCcccCcHHH-HHcCCcc
Q 020104          233 MVHVDDVARAHIFLLEYPDAKGRYICS-SHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSSKKL-LDAGFRY  310 (331)
Q Consensus       233 ~i~v~D~a~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~lg~~~  310 (331)
                      |+|++|+|++++.++.++..+++||++ ++.+|+.|+++.+.+.+|....................+|++|+ +.|||+|
T Consensus       240 ~i~v~Dva~a~~~~~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p  319 (346)
T 4egb_A          240 WLHVTDHCSAIDVVLHKGRVGEVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVTDRLGHDRRYAINAEKMKNEFDWEP  319 (346)
T ss_dssp             EEEHHHHHHHHHHHHHHCCTTCEEEECCSCCEEHHHHHHHHHHHHTCCGGGCEEECC--CCCSCCCBCCHHHHHHHCCCC
T ss_pred             eEEHHHHHHHHHHHHhcCCCCCEEEECCCCceeHHHHHHHHHHHhCCCcccccccCCCCCCcceeeccHHHHHHHcCCCC
Confidence            999999999999999988777899975 56799999999999988832211100111112345667999999 7899999


Q ss_pred             ccChhhhHHHHHHHHHHc
Q 020104          311 NYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       311 ~~~~~e~i~~~~~~~~~~  328 (331)
                      +++++|+|+++++||+++
T Consensus       320 ~~~~~e~l~~~~~~~~~~  337 (346)
T 4egb_A          320 KYTFEQGLQETVQWYEKN  337 (346)
T ss_dssp             CCCHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHhh
Confidence            999999999999999876

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=100.00  E-value=7.6e-48  Score=341.18  Aligned_cols=308  Identities=19%  Similarity=0.150  Sum_probs=238.3

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCC--CCCcEEEEeCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPG--ASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      ++|+|||||||||||++|+++|+++|++|++++|+..    .....+..+.....  ...+++++.+|+.|.+++.++++
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~   99 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFST----GHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMK   99 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS----CCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTT
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCC----CchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhc
Confidence            4689999999999999999999999999999999872    12222222211100  01478999999999999999999


Q ss_pred             CccEEEEecccCC--CCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhh
Q 020104           82 GCTGVLHVATPVD--FEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIR  159 (331)
Q Consensus        82 ~~d~Vih~a~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~  159 (331)
                      ++|+|||+|+...  ....++. ..+++|+.++.+++++|++.+ +++|||+||.++|+  .....+++|+++       
T Consensus       100 ~~d~Vih~A~~~~~~~~~~~~~-~~~~~nv~~~~~ll~a~~~~~-~~~~v~~SS~~vyg--~~~~~~~~E~~~-------  168 (351)
T 3ruf_A          100 GVDHVLHQAALGSVPRSIVDPI-TTNATNITGFLNILHAAKNAQ-VQSFTYAASSSTYG--DHPALPKVEENI-------  168 (351)
T ss_dssp             TCSEEEECCCCCCHHHHHHCHH-HHHHHHTHHHHHHHHHHHHTT-CSEEEEEEEGGGGT--TCCCSSBCTTCC-------
T ss_pred             CCCEEEECCccCCcchhhhCHH-HHHHHHHHHHHHHHHHHHHcC-CCEEEEEecHHhcC--CCCCCCCccCCC-------
Confidence            9999999999654  1223444 789999999999999999998 89999999999985  444578888885       


Q ss_pred             hcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCC--ccHHHHH-HHHhCCCcc-cccCCC-ccce
Q 020104          160 KLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFA--GSVRSSL-ALILGNREE-YGFLLN-TSMV  234 (331)
Q Consensus       160 ~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~--~~~~~~~-~~~~~~~~~-~~~~~~-~~~i  234 (331)
                        ..|.+.|+.+|..+|++++.++.+++++++++||+.+|||+..+...  ..+..+. ....+.... ++.+.. ++|+
T Consensus       169 --~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i  246 (351)
T 3ruf_A          169 --GNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFC  246 (351)
T ss_dssp             --CCCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEECSEESTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCE
T ss_pred             --CCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeeCceeCcCCCCCcchhhHHHHHHHHHHcCCCcEEeCCCCeEEeeE
Confidence              35678999999999999999998889999999999999998764321  2333333 334455433 344444 7999


Q ss_pred             eHHHHHHHHHHhhcC--CCCCceEEEe-ccccCHHHHHHHHHhhCCCCCCCCc--cCCcc--ccCCcCcccCcHHH-HHc
Q 020104          235 HVDDVARAHIFLLEY--PDAKGRYICS-SHTLTIQEMAEFLSAKYPEYPIPTV--DSLAE--IEGYRAPGSSSKKL-LDA  306 (331)
Q Consensus       235 ~v~D~a~~~~~~~~~--~~~~~~~~~~-~~~~s~~e~~~~i~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~k~-~~l  306 (331)
                      |++|+|++++.++.+  ...+++||++ ++.+|+.|+++.+.+.+|.......  .....  ........+|++|+ +.|
T Consensus       247 ~v~Dva~a~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~l  326 (351)
T 3ruf_A          247 YIDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADVTKAIDLL  326 (351)
T ss_dssp             EHHHHHHHHHHHHTCCGGGCSEEEEESCSCCEEHHHHHHHHHHHHHTTCCC-----EEECCCTTCCSBCCBCCHHHHHHH
T ss_pred             EHHHHHHHHHHHHhhccccCCCEEEeCCCCcccHHHHHHHHHHHhCcccccccccccccCCCCCccceeeeCHHHHHHHh
Confidence            999999999999987  3456789974 6789999999999998874211110  01111  13345678999999 779


Q ss_pred             CCccccChhhhHHHHHHHHHHc
Q 020104          307 GFRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       307 g~~~~~~~~e~i~~~~~~~~~~  328 (331)
                      ||+|+++++++|+++++||+++
T Consensus       327 G~~p~~~~~~~l~~~~~~~~~~  348 (351)
T 3ruf_A          327 KYRPNIKIREGLRLSMPWYVRF  348 (351)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999764

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=100.00  E-value=2.2e-46  Score=326.56  Aligned_cols=293  Identities=20%  Similarity=0.234  Sum_probs=224.2

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      ||+|||||||||||++|+++|+++|+ |+++.+...    ......         ..+++++.+|+.| +++.++++++|
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g~-~v~~~~~~~----~~~~~~---------~~~~~~~~~Dl~~-~~~~~~~~~~d   65 (313)
T 3ehe_A            1 MSLIVVTGGAGFIGSHVVDKLSESNE-IVVIDNLSS----GNEEFV---------NEAARLVKADLAA-DDIKDYLKGAE   65 (313)
T ss_dssp             --CEEEETTTSHHHHHHHHHHTTTSC-EEEECCCSS----CCGGGS---------CTTEEEECCCTTT-SCCHHHHTTCS
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC-EEEEEcCCC----CChhhc---------CCCcEEEECcCCh-HHHHHHhcCCC
Confidence            46899999999999999999999994 444544331    111111         2578999999999 99999999999


Q ss_pred             EEEEecccCC--CCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcC
Q 020104           85 GVLHVATPVD--FEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLD  162 (331)
Q Consensus        85 ~Vih~a~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~  162 (331)
                      +|||+|+...  ....++. ..+++|+.++.+++++|++.+ +++|||+||.++|+  .....+++|+++         .
T Consensus        66 ~vih~a~~~~~~~~~~~~~-~~~~~nv~~~~~l~~~~~~~~-~~~iv~~SS~~vyg--~~~~~~~~E~~~---------~  132 (313)
T 3ehe_A           66 EVWHIAANPDVRIGAENPD-EIYRNNVLATYRLLEAMRKAG-VSRIVFTSTSTVYG--EAKVIPTPEDYP---------T  132 (313)
T ss_dssp             EEEECCCCCCCC-CCCCHH-HHHHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGGC--SCSSSSBCTTSC---------C
T ss_pred             EEEECCCCCChhhhhhCHH-HHHHHHHHHHHHHHHHHHHcC-CCeEEEeCchHHhC--cCCCCCCCCCCC---------C
Confidence            9999998643  3344555 899999999999999999998 89999999999996  445567888874         3


Q ss_pred             CCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHH-HHHhCCC--cccccCCC-ccceeHHH
Q 020104          163 SWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSL-ALILGNR--EEYGFLLN-TSMVHVDD  238 (331)
Q Consensus       163 ~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~-~~~i~v~D  238 (331)
                      .|.+.|+.+|..+|.+++.++.+++++++++||+.+|||+...   ..+..++ ....+..  ..++.+.. ++|+|++|
T Consensus       133 ~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D  209 (313)
T 3ehe_A          133 HPISLYGASKLACEALIESYCHTFDMQAWIYRFANVIGRRSTH---GVIYDFIMKLKRNPEELEILGNGEQNKSYIYISD  209 (313)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHTTCEEEEEECSCEESTTCCC---SHHHHHHHHHHHCTTEEEESTTSCCEECCEEHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCEEEEeeccccCcCCCc---ChHHHHHHHHHcCCCceEEeCCCCeEEeEEEHHH
Confidence            5678899999999999999999899999999999999998654   2333333 3333422  23444444 79999999


Q ss_pred             HHHHHHHhhcCCCCCceEEEe-ccccCHHHHHHHHHhhCCCCC-CCCccC-CccccCCcCcccCcHHHHHcCCccccChh
Q 020104          239 VARAHIFLLEYPDAKGRYICS-SHTLTIQEMAEFLSAKYPEYP-IPTVDS-LAEIEGYRAPGSSSKKLLDAGFRYNYGID  315 (331)
Q Consensus       239 ~a~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~i~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~k~~~lg~~~~~~~~  315 (331)
                      +|++++.+++....+++||++ ++.+|+.|+++.+.+.+|... +..... ...........+|++|++.|||+|+++++
T Consensus       210 va~a~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~~~  289 (313)
T 3ehe_A          210 CVDAMLFGLRGDERVNIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDVPVMLLSIEKLKRLGWKPRYNSE  289 (313)
T ss_dssp             HHHHHHHHTTCCSSEEEEECCCSCCEEHHHHHHHHHHHTTCCCEEEEC------------CCBCCHHHHHHTCCCSCCHH
T ss_pred             HHHHHHHHhccCCCCceEEECCCCCeeHHHHHHHHHHHhCCCCceEECCCccCCccccceeccCHHHHHHcCCCCCCCHH
Confidence            999999999966667899975 578999999999999987321 111000 00112234567899999779999999999


Q ss_pred             hhHHHHHHHHHHc
Q 020104          316 EMFDEAIQCCKEK  328 (331)
Q Consensus       316 e~i~~~~~~~~~~  328 (331)
                      |+|+++++||+++
T Consensus       290 e~l~~~~~~~~~~  302 (313)
T 3ehe_A          290 EAVRMAVRDLVED  302 (313)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999999875

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=100.00  E-value=3.2e-46  Score=329.41  Aligned_cols=306  Identities=19%  Similarity=0.220  Sum_probs=233.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      ++|+|||||||||||++++++|+++|++|++++|+..    ........+....  ..+++++.+|+.|.+++.++++  
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~----~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~   77 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVN----SKREAIARIEKIT--GKTPAFHETDVSDERALARIFDAH   77 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSS----SCTHHHHHHHHHH--SCCCEEECCCTTCHHHHHHHHHHS
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCc----chHHHHHHHHhhc--CCCceEEEeecCCHHHHHHHHhcc
Confidence            4579999999999999999999999999999999872    1111111111110  1468899999999999999998  


Q ss_pred             CccEEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhh
Q 020104           82 GCTGVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIR  159 (331)
Q Consensus        82 ~~d~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~  159 (331)
                      ++|+|||+|+....  ...++. +.++.|+.++.+++++|++.+ +++|||+||.++|+  .....+++|+++       
T Consensus        78 ~~d~vih~A~~~~~~~~~~~~~-~~~~~n~~~~~~l~~~~~~~~-~~~iv~~SS~~~~g--~~~~~~~~e~~~-------  146 (341)
T 3enk_A           78 PITAAIHFAALKAVGESVAKPI-EYYRNNLDSLLSLLRVMRERA-VKRIVFSSSATVYG--VPERSPIDETFP-------  146 (341)
T ss_dssp             CCCEEEECCCCCCHHHHHHCHH-HHHHHHHHHHHHHHHHHHHTT-CCEEEEEEEGGGBC--SCSSSSBCTTSC-------
T ss_pred             CCcEEEECccccccCccccChH-HHHHHHHHHHHHHHHHHHhCC-CCEEEEEecceEec--CCCCCCCCCCCC-------
Confidence            89999999997542  122343 788999999999999999998 89999999999985  445667888875       


Q ss_pred             hcCCCCchhHhhHHHHHHHHHHHHHHcC-CcEEEeccCceeCCCCCCC--------CCccHHHHHHHHhCCCcc---cc-
Q 020104          160 KLDSWGKSYAISKTLTERAALEFAEEHG-LDLVTLIPSMVVGPFICPK--------FAGSVRSSLALILGNREE---YG-  226 (331)
Q Consensus       160 ~~~~~~~~Y~~~K~~~e~~~~~~~~~~~-~~~~ilRp~~v~G~~~~~~--------~~~~~~~~~~~~~~~~~~---~~-  226 (331)
                        ..|.++|+.+|.++|.+++.++.+++ ++++++||+++|||+....        ....+..+.....+....   ++ 
T Consensus       147 --~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  224 (341)
T 3enk_A          147 --LSATNPYGQTKLMAEQILRDVEAADPSWRVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGS  224 (341)
T ss_dssp             --CBCSSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCSSHHHHHHHHHHTSSSCEEEECS
T ss_pred             --CCCCChhHHHHHHHHHHHHHHhhcCCCceEEEEeeccccCCccccccCCCcccCccchHHHHHHHHhcCCCceEEeCC
Confidence              34677999999999999999988876 9999999999999965321        122233334444443322   22 


Q ss_pred             -----cCCC-ccceeHHHHHHHHHHhhcC---CCCCceEEE-eccccCHHHHHHHHHhhCCCCCCCCccCCccccCCcCc
Q 020104          227 -----FLLN-TSMVHVDDVARAHIFLLEY---PDAKGRYIC-SSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAP  296 (331)
Q Consensus       227 -----~~~~-~~~i~v~D~a~~~~~~~~~---~~~~~~~~~-~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  296 (331)
                           .+.. ++|+|++|+|++++.++++   ...+++||+ +++.+|+.|+++.+.+.+|.. .+..............
T Consensus       225 ~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~  303 (341)
T 3enk_A          225 DYPTPDGTGVRDYIHVVDLARGHIAALDALERRDASLTVNLGTGRGYSVLEVVRAFEKASGRA-VPYELVARRPGDVAEC  303 (341)
T ss_dssp             CSSSTTSSCEECEEEHHHHHHHHHHHHHHHHHHTSCEEEEESCSCCEEHHHHHHHHHHHHCSC-CCEEEECCCTTCCSEE
T ss_pred             ccCCCCCCeeEeeEEHHHHHHHHHHHHHhhhcCCcceEEEeCCCCceeHHHHHHHHHHHhCCC-cceeeCCCCCCCcccc
Confidence                 3333 7999999999999999986   345779997 467899999999999988732 2210011111334467


Q ss_pred             ccCcHHH-HHcCCccccChhhhHHHHHHHHHHcC
Q 020104          297 GSSSKKL-LDAGFRYNYGIDEMFDEAIQCCKEKG  329 (331)
Q Consensus       297 ~~~~~k~-~~lg~~~~~~~~e~i~~~~~~~~~~~  329 (331)
                      .+|++|+ +.|||+|+++++|+|+++++||+++.
T Consensus       304 ~~d~~k~~~~lG~~p~~~l~~~l~~~~~~~~~~~  337 (341)
T 3enk_A          304 YANPAAAAETIGWKAERDLERMCADHWRWQENNP  337 (341)
T ss_dssp             CBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHST
T ss_pred             ccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcC
Confidence            7899999 88999999999999999999998874

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=100.00  E-value=7.2e-46  Score=329.76  Aligned_cols=304  Identities=16%  Similarity=0.143  Sum_probs=230.7

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHH--CCCeEEEEecCCCCcc--cCCccccccccCCCCCCCcEEEEeCCCCCCccHHH
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLD--HGYSVTTTVRSELDPE--HRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDA   78 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~--~g~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~   78 (331)
                      .++|+|||||||||||++|+++|++  .|++|++++|+.....  ....+.+......  ...+++++.+|+.|++++.+
T Consensus         8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~   85 (362)
T 3sxp_A            8 LENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNL--IGFKGEVIAADINNPLDLRR   85 (362)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGG--TTCCSEEEECCTTCHHHHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhc--cccCceEEECCCCCHHHHHH
Confidence            3467999999999999999999999  8999999999762000  0011111111111  12467999999999999999


Q ss_pred             H-hcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhh
Q 020104           79 A-IAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDY  157 (331)
Q Consensus        79 ~-~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~  157 (331)
                      + ..++|+|||+|+.......++. ..+++|+.++.+++++|++.+ ++ |||+||.++|+.  ... +++|+++     
T Consensus        86 ~~~~~~D~vih~A~~~~~~~~~~~-~~~~~Nv~gt~~ll~aa~~~~-~~-~V~~SS~~vyg~--~~~-~~~E~~~-----  154 (362)
T 3sxp_A           86 LEKLHFDYLFHQAAVSDTTMLNQE-LVMKTNYQAFLNLLEIARSKK-AK-VIYASSAGVYGN--TKA-PNVVGKN-----  154 (362)
T ss_dssp             HTTSCCSEEEECCCCCGGGCCCHH-HHHHHHTHHHHHHHHHHHHTT-CE-EEEEEEGGGGCS--CCS-SBCTTSC-----
T ss_pred             hhccCCCEEEECCccCCccccCHH-HHHHHHHHHHHHHHHHHHHcC-Cc-EEEeCcHHHhCC--CCC-CCCCCCC-----
Confidence            8 7899999999997765555665 899999999999999999988 65 999999999863  222 8888875     


Q ss_pred             hhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCC--ccHHHHHH-HHhCCCccc-ccCCC-cc
Q 020104          158 IRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFA--GSVRSSLA-LILGNREEY-GFLLN-TS  232 (331)
Q Consensus       158 ~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~--~~~~~~~~-~~~~~~~~~-~~~~~-~~  232 (331)
                          ..|.++|+.+|.++|.+++.++.+  ++++++||+++|||+......  ..+..+.. ...+....+ +.+.. ++
T Consensus       155 ----~~p~~~Y~~sK~~~E~~~~~~~~~--~~~~~lR~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  228 (362)
T 3sxp_A          155 ----ESPENVYGFSKLCMDEFVLSHSND--NVQVGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFGEQLRD  228 (362)
T ss_dssp             ----CCCSSHHHHHHHHHHHHHHHTTTT--SCEEEEEECSEESTTCGGGGGGSCHHHHHHHHHHTTSEEECSGGGCCEEE
T ss_pred             ----CCCCChhHHHHHHHHHHHHHHhcc--CCEEEEEeCceeCcCCCCCCcchhHHHHHHHHHHhCCCeEEECCCCeEEc
Confidence                356789999999999999998764  899999999999998754211  23333333 334444333 44444 79


Q ss_pred             ceeHHHHHHHHHHhhcCCCCCceEEE-eccccCHHHHHHHHHhhCCCCCCCCccCCcc-ccCCcCcccCcHHH-HHcCCc
Q 020104          233 MVHVDDVARAHIFLLEYPDAKGRYIC-SSHTLTIQEMAEFLSAKYPEYPIPTVDSLAE-IEGYRAPGSSSKKL-LDAGFR  309 (331)
Q Consensus       233 ~i~v~D~a~~~~~~~~~~~~~~~~~~-~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~-~~lg~~  309 (331)
                      |+|++|+|++++.+++++..+ +||+ +++.+|+.|+++.+.+.+|...+..  .... ........+|++|+ +.|||+
T Consensus       229 ~i~v~Dva~ai~~~~~~~~~g-~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~--~~~~~~~~~~~~~~d~~k~~~~lG~~  305 (362)
T 3sxp_A          229 FVYIEDVIQANVKAMKAQKSG-VYNVGYSQARSYNEIVSILKEHLGDFKVTY--IKNPYAFFQKHTQAHIEPTILDLDYT  305 (362)
T ss_dssp             CEEHHHHHHHHHHHTTCSSCE-EEEESCSCEEEHHHHHHHHHHHHCCCEEEC--CC-------CCCCBCCHHHHHHHCCC
T ss_pred             cEEHHHHHHHHHHHHhcCCCC-EEEeCCCCCccHHHHHHHHHHHcCCCceEE--CCCCCcCcccceecCHHHHHHHhCCC
Confidence            999999999999999987655 9997 4678999999999999988221111  1111 23345678999999 899999


Q ss_pred             cccChhhhHHHHHHHHHHc
Q 020104          310 YNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       310 ~~~~~~e~i~~~~~~~~~~  328 (331)
                      |+++++++|+++++||+++
T Consensus       306 p~~~l~e~l~~~~~~~~~~  324 (362)
T 3sxp_A          306 PLYDLESGIKDYLPHIHAI  324 (362)
T ss_dssp             CCCCHHHHHHHHHHHHTCC
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999754

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=100.00  E-value=4.7e-46  Score=324.38  Aligned_cols=293  Identities=21%  Similarity=0.236  Sum_probs=227.8

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCccE
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTG   85 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~   85 (331)
                      |+|||||||||||++|+++|+++|++|++++|+..     ......        ..+++++.+|+.|.+ +.+++++ |+
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-----~~~~~~--------~~~~~~~~~Dl~d~~-~~~~~~~-d~   65 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSS-----GRREFV--------NPSAELHVRDLKDYS-WGAGIKG-DV   65 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSS-----CCGGGS--------CTTSEEECCCTTSTT-TTTTCCC-SE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCC-----Cchhhc--------CCCceEEECccccHH-HHhhcCC-CE
Confidence            48999999999999999999999999999999872     211111        257899999999998 8888888 99


Q ss_pred             EEEecccCC--CCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCC
Q 020104           86 VLHVATPVD--FEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDS  163 (331)
Q Consensus        86 Vih~a~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~  163 (331)
                      |||+|+...  ....++. ..+++|+.++.+++++|++.+ +++|||+||.++|+  .....+++|+++         ..
T Consensus        66 vih~A~~~~~~~~~~~~~-~~~~~n~~~~~~l~~a~~~~~-~~~iv~~SS~~vyg--~~~~~~~~e~~~---------~~  132 (312)
T 3ko8_A           66 VFHFAANPEVRLSTTEPI-VHFNENVVATFNVLEWARQTG-VRTVVFASSSTVYG--DADVIPTPEEEP---------YK  132 (312)
T ss_dssp             EEECCSSCSSSGGGSCHH-HHHHHHHHHHHHHHHHHHHHT-CCEEEEEEEGGGGC--SCSSSSBCTTSC---------CC
T ss_pred             EEECCCCCCchhhhhCHH-HHHHHHHHHHHHHHHHHHHcC-CCEEEEeCcHHHhC--CCCCCCCCCCCC---------CC
Confidence            999998643  2334555 889999999999999999998 89999999999995  445567888874         35


Q ss_pred             CCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHH-HHhCCC--cccccCCC-ccceeHHHH
Q 020104          164 WGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLA-LILGNR--EEYGFLLN-TSMVHVDDV  239 (331)
Q Consensus       164 ~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~-~~~i~v~D~  239 (331)
                      |.+.|+.+|..+|.+++.++.+++++++++||+++|||+...   ..+..+.. ...+..  ..++.+.. ++|+|++|+
T Consensus       133 p~~~Y~~sK~~~e~~~~~~~~~~g~~~~~lrp~~v~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dv  209 (312)
T 3ko8_A          133 PISVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVGPRLRH---GVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDA  209 (312)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCS---SHHHHHHHHHHHCTTEEEEC----CEECEEEHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHHHHhCCCEEEEeeccccCcCCCC---ChHHHHHHHHHhCCCCeEEcCCCCeEEeeEEHHHH
Confidence            678999999999999999999889999999999999998653   22333332 333322  23444444 799999999


Q ss_pred             HHHHHHhhcC----CCCCceEEEe-ccccCHHHHHHHHHhhCCCCC----CCCccC-CccccCCcCcccCcHHH-HHcCC
Q 020104          240 ARAHIFLLEY----PDAKGRYICS-SHTLTIQEMAEFLSAKYPEYP----IPTVDS-LAEIEGYRAPGSSSKKL-LDAGF  308 (331)
Q Consensus       240 a~~~~~~~~~----~~~~~~~~~~-~~~~s~~e~~~~i~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~k~-~~lg~  308 (331)
                      |++++.++++    ...+++||++ ++.+|+.|+++.+.+.++...    ++.... ...........+|++|+ +.|||
T Consensus       210 a~a~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~  289 (312)
T 3ko8_A          210 VEATLAAWKKFEEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAVTKLMKLTGW  289 (312)
T ss_dssp             HHHHHHHHHHHHHSCCSEEEEEESCSSCEEHHHHHHHHHHHHTCCCEEEEC----------CCCSEECBCCHHHHHHHCC
T ss_pred             HHHHHHHHHhccccCCCCcEEEEcCCCceeHHHHHHHHHHHhCCCCceeecCccccccCCCCCccccccCHHHHHHHhCC
Confidence            9999999987    3456789975 578999999999999887221    111000 00112334578999999 99999


Q ss_pred             ccccChhhhHHHHHHHHHHcC
Q 020104          309 RYNYGIDEMFDEAIQCCKEKG  329 (331)
Q Consensus       309 ~~~~~~~e~i~~~~~~~~~~~  329 (331)
                      +|+++++|+|+++++|+++++
T Consensus       290 ~p~~~~~~~l~~~~~~~~~~~  310 (312)
T 3ko8_A          290 RPTMTSAEAVKKTAEDLAKEL  310 (312)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhhh
Confidence            999999999999999998875

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=100.00  E-value=4.2e-46  Score=329.49  Aligned_cols=291  Identities=19%  Similarity=0.217  Sum_probs=232.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+|+|||||||||||++|+++|+++|++|++++|+..     .              .+++++.+|+.|.+++.+++.++
T Consensus        18 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~-----~--------------~~~~~~~~Dl~d~~~~~~~~~~~   78 (347)
T 4id9_A           18 GSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPS-----G--------------TGGEEVVGSLEDGQALSDAIMGV   78 (347)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCC-----S--------------SCCSEEESCTTCHHHHHHHHTTC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCC-----C--------------CCccEEecCcCCHHHHHHHHhCC
Confidence            4578999999999999999999999999999999872     1              35788999999999999999999


Q ss_pred             cEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCC
Q 020104           84 TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDS  163 (331)
Q Consensus        84 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~  163 (331)
                      |+|||+|+.......+.. ..+++|+.++.+++++|++.+ +++|||+||.++|+.......+++|+++         ..
T Consensus        79 d~vih~A~~~~~~~~~~~-~~~~~nv~~~~~ll~a~~~~~-~~~~V~~SS~~vyg~~~~~~~~~~E~~~---------~~  147 (347)
T 4id9_A           79 SAVLHLGAFMSWAPADRD-RMFAVNVEGTRRLLDAASAAG-VRRFVFASSGEVYPENRPEFLPVTEDHP---------LC  147 (347)
T ss_dssp             SEEEECCCCCCSSGGGHH-HHHHHHTHHHHHHHHHHHHTT-CSEEEEEEEGGGTTTTSCSSSSBCTTSC---------CC
T ss_pred             CEEEECCcccCcchhhHH-HHHHHHHHHHHHHHHHHHHcC-CCeEEEECCHHHhCCCCCCCCCcCCCCC---------CC
Confidence            999999998765544444 899999999999999999998 8999999999999743356678888885         35


Q ss_pred             CCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCcee-------------CCCCCCC---------CCccHHHHHHHH-hC
Q 020104          164 WGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVV-------------GPFICPK---------FAGSVRSSLALI-LG  220 (331)
Q Consensus       164 ~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~-------------G~~~~~~---------~~~~~~~~~~~~-~~  220 (331)
                      |.+.|+.+|..+|++++.++.+++++++++||+.+|             ||+....         ....+..++... .+
T Consensus       148 ~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (347)
T 4id9_A          148 PNSPYGLTKLLGEELVRFHQRSGAMETVILRFSHTQDATELLDEDSFFSGPRFFLRPRIHQQQNFGNAAIAELLQSRDIG  227 (347)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHSSSEEEEEEECEEECGGGTTCTTSSSHHHHHBHHHHHHHHHHHTCHHHHHHHHHHCCS
T ss_pred             CCChHHHHHHHHHHHHHHHHHhcCCceEEEccceEeecccccccccccCCCCcccccccccccccchhHHHHHHHHHHcC
Confidence            678999999999999999999899999999999999             7653321         012233333333 33


Q ss_pred             CC-cccccCCC-ccc----eeHHHHHHHHHHhhcCC-CCCceEEEe-ccccCHHHHHHHHHhhCCCCCCCCccCCccccC
Q 020104          221 NR-EEYGFLLN-TSM----VHVDDVARAHIFLLEYP-DAKGRYICS-SHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEG  292 (331)
Q Consensus       221 ~~-~~~~~~~~-~~~----i~v~D~a~~~~~~~~~~-~~~~~~~~~-~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~  292 (331)
                      .+ ..++.+.. ++|    +|++|+|++++.++.++ ..+++||++ ++.+|+.|+++.+.+.+|.. .+.. ..+  ..
T Consensus       228 ~~~~~~g~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~-~~~~-~~p--~~  303 (347)
T 4id9_A          228 EPSHILARNENGRPFRMHITDTRDMVAGILLALDHPEAAGGTFNLGADEPADFAALLPKIAALTGLP-IVTV-DFP--GD  303 (347)
T ss_dssp             SCCEEEEECTTCCBCEECEEEHHHHHHHHHHHHHCGGGTTEEEEESCSSCEEHHHHHHHHHHHHCCC-EEEE-ECS--SC
T ss_pred             CCeEEeCCCCcccCCccCcEeHHHHHHHHHHHhcCcccCCCeEEECCCCcccHHHHHHHHHHHhCCC-Ccee-eCC--Cc
Confidence            33 23334333 688    99999999999999987 457799975 67899999999999988731 1110 011  11


Q ss_pred             CcCcccCcHHH-HHcCCccccChhhhHHHHHHHHHHc
Q 020104          293 YRAPGSSSKKL-LDAGFRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       293 ~~~~~~~~~k~-~~lg~~~~~~~~e~i~~~~~~~~~~  328 (331)
                      .....+|++|+ +.|||+|+++++++|+++++||+++
T Consensus       304 ~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~  340 (347)
T 4id9_A          304 GVYYHTSNERIRNTLGFEAEWTMDRMLEEAATARRQR  340 (347)
T ss_dssp             CCBCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_pred             ccccccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhh
Confidence            12678999999 7799999999999999999999865

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=100.00  E-value=7e-46  Score=323.28  Aligned_cols=295  Identities=16%  Similarity=0.165  Sum_probs=227.3

Q ss_pred             CceEEEecCcchhHHHHHHHHHHC--CCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDH--GYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      +|+|||||||||||++|+++|+++  |++|++++|+..     ... +  .       .+++++.+|+.|.+++.++++ 
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~-----~~~-~--~-------~~~~~~~~D~~d~~~~~~~~~~   66 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKL-----NTD-V--V-------NSGPFEVVNALDFNQIEHLVEV   66 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCC-----SCH-H--H-------HSSCEEECCTTCHHHHHHHHHH
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCc-----ccc-c--c-------CCCceEEecCCCHHHHHHHHhh
Confidence            478999999999999999999998  899999999872     211 1  0       246789999999999999998 


Q ss_pred             -CccEEEEecccCCCC-CCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhh
Q 020104           82 -GCTGVLHVATPVDFE-DKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIR  159 (331)
Q Consensus        82 -~~d~Vih~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~  159 (331)
                       ++|+|||+|+..... ..++. ..+++|+.++.+++++|++.+ +++|||+||.++|+.. ....+.+|+++       
T Consensus        67 ~~~d~vih~a~~~~~~~~~~~~-~~~~~n~~~~~~l~~~~~~~~-~~~~v~~SS~~~~~~~-~~~~~~~e~~~-------  136 (312)
T 2yy7_A           67 HKITDIYLMAALLSATAEKNPA-FAWDLNMNSLFHVLNLAKAKK-IKKIFWPSSIAVFGPT-TPKENTPQYTI-------  136 (312)
T ss_dssp             TTCCEEEECCCCCHHHHHHCHH-HHHHHHHHHHHHHHHHHHTTS-CSEEECCEEGGGCCTT-SCSSSBCSSCB-------
T ss_pred             cCCCEEEECCccCCCchhhChH-HHHHHHHHHHHHHHHHHHHcC-CCEEEEeccHHHhCCC-CCCCCccccCc-------
Confidence             899999999865421 23444 789999999999999999988 8999999999998632 23346677663       


Q ss_pred             hcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCC---ccHHHHHHHHhCCC-cccccCCC-ccce
Q 020104          160 KLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFA---GSVRSSLALILGNR-EEYGFLLN-TSMV  234 (331)
Q Consensus       160 ~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~-~~~i  234 (331)
                        ..|.++|+.+|..+|.+++.++.+++++++++||+.+||++..+...   .....+...+.+.. ..++.+.. ++|+
T Consensus       137 --~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  214 (312)
T 2yy7_A          137 --MEPSTVYGISKQAGERWCEYYHNIYGVDVRSIRYPGLISWSTPPGGGTTDYAVDIFYKAIADKKYECFLSSETKMPMM  214 (312)
T ss_dssp             --CCCCSHHHHHHHHHHHHHHHHHHHHCCEEECEEECEEECSSSCCCSCTTTHHHHHHHHHHHTSEEEESSCTTCCEEEE
T ss_pred             --CCCCchhHHHHHHHHHHHHHHHHhcCCcEEEEeCCeEecCCCCCCCchhhhHHHHHHHHHcCCCeEEecCCCceeeee
Confidence              35677999999999999999988889999999999999986543211   12233333344443 33343333 7999


Q ss_pred             eHHHHHHHHHHhhcCCCC----CceEEEeccccCHHHHHHHHHhhCCCCCCCCccCCcc-ccCCcCcccCcHHH-HHcCC
Q 020104          235 HVDDVARAHIFLLEYPDA----KGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAE-IEGYRAPGSSSKKL-LDAGF  308 (331)
Q Consensus       235 ~v~D~a~~~~~~~~~~~~----~~~~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~-~~lg~  308 (331)
                      |++|+|++++.+++++..    +++||++++.+|+.|+++.+.+.+|...++....... ........+|++|+ +.|||
T Consensus       215 ~v~Dva~a~~~~~~~~~~~~~~~~~~ni~~~~~s~~e~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~k~~~~lG~  294 (312)
T 2yy7_A          215 YMDDAIDATINIMKAPVEKIKIHSSYNLAAMSFTPTEIANEIKKHIPEFTITYEPDFRQKIADSWPASIDDSQAREDWDW  294 (312)
T ss_dssp             EHHHHHHHHHHHHHSCGGGCCCSSCEECCSEEECHHHHHHHHHTTCTTCEEEECCCTHHHHHTTSCSSBCCHHHHHHHCC
T ss_pred             eHHHHHHHHHHHHhCcccccccCceEEeCCCccCHHHHHHHHHHHCCCCceEeccCccccccccccccCCHHHHHHHcCC
Confidence            999999999999987653    3789987788999999999999988433222111011 11223457899999 77999


Q ss_pred             ccccChhhhHHHHHHHHH
Q 020104          309 RYNYGIDEMFDEAIQCCK  326 (331)
Q Consensus       309 ~~~~~~~e~i~~~~~~~~  326 (331)
                      +|+++++|+|+++++||+
T Consensus       295 ~p~~~l~~~l~~~~~~~k  312 (312)
T 2yy7_A          295 KHTFDLESMTKDMIEHLS  312 (312)
T ss_dssp             CCCCCHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHhC
Confidence            999999999999999984

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=100.00  E-value=2.2e-44  Score=322.01  Aligned_cols=303  Identities=17%  Similarity=0.147  Sum_probs=231.9

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |..+||+|||||||||||++++++|+++|++|++++|+..     ......        ..+++++.+|+.|.+++.+++
T Consensus        25 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-----~~~~~~--------~~~v~~~~~Dl~d~~~~~~~~   91 (379)
T 2c5a_A           25 WPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKN-----EHMTED--------MFCDEFHLVDLRVMENCLKVT   91 (379)
T ss_dssp             CTTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC-----SSSCGG--------GTCSEEEECCTTSHHHHHHHH
T ss_pred             ccccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCc-----cchhhc--------cCCceEEECCCCCHHHHHHHh
Confidence            3445789999999999999999999999999999999872     211111        146889999999999999999


Q ss_pred             cCccEEEEecccCCCC---CCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCC---CCCcccCCCCCC
Q 020104           81 AGCTGVLHVATPVDFE---DKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDK---DVDMMDETFWSD  154 (331)
Q Consensus        81 ~~~d~Vih~a~~~~~~---~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~---~~~~~~E~~~~~  154 (331)
                      +++|+|||+|+.....   ..++. ..+++|+.++.+++++|++.+ +++|||+||.++|+....   ...+++|+++. 
T Consensus        92 ~~~d~Vih~A~~~~~~~~~~~~~~-~~~~~Nv~g~~~ll~a~~~~~-~~~~V~~SS~~v~~~~~~~~~~~~~~~E~~~~-  168 (379)
T 2c5a_A           92 EGVDHVFNLAADMGGMGFIQSNHS-VIMYNNTMISFNMIEAARING-IKRFFYASSACIYPEFKQLETTNVSLKESDAW-  168 (379)
T ss_dssp             TTCSEEEECCCCCCCHHHHTTCHH-HHHHHHHHHHHHHHHHHHHTT-CSEEEEEEEGGGSCGGGSSSSSSCEECGGGGS-
T ss_pred             CCCCEEEECceecCcccccccCHH-HHHHHHHHHHHHHHHHHHHcC-CCEEEEEeehheeCCCCCCCccCCCcCcccCC-
Confidence            9999999999975421   33454 889999999999999999988 899999999999863221   12356666521 


Q ss_pred             hhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCC--ccHHHHHH-HHhCCC-c-ccccCC
Q 020104          155 VDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFA--GSVRSSLA-LILGNR-E-EYGFLL  229 (331)
Q Consensus       155 ~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~--~~~~~~~~-~~~~~~-~-~~~~~~  229 (331)
                            +..|.+.|+.+|..+|.+++.++.+++++++++||+.+|||+......  ..+..+.. ...+.+ . .++.+.
T Consensus       169 ------~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~  242 (379)
T 2c5a_A          169 ------PAEPQDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGL  242 (379)
T ss_dssp             ------SBCCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSC
T ss_pred             ------CCCCCChhHHHHHHHHHHHHHHHHHHCCCEEEEEeCceeCcCCCcccccccHHHHHHHHHHhCCCceEEeCCCC
Confidence                  134567899999999999999988889999999999999997654221  13333333 334443 2 234443


Q ss_pred             C-ccceeHHHHHHHHHHhhcCCCCCceEEEe-ccccCHHHHHHHHHhhCCCCCCCCccCCccccCCcCcccCcHHH-HHc
Q 020104          230 N-TSMVHVDDVARAHIFLLEYPDAKGRYICS-SHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSSKKL-LDA  306 (331)
Q Consensus       230 ~-~~~i~v~D~a~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~l  306 (331)
                      . ++|+|++|+|++++.+++++ .+++||++ ++.+|+.|+++.+.+.+|.. .+.. ..+.........+|++|+ +.|
T Consensus       243 ~~~~~i~v~Dva~ai~~~l~~~-~~~~~ni~~~~~~s~~e~~~~i~~~~g~~-~~~~-~~p~~~~~~~~~~d~~k~~~~l  319 (379)
T 2c5a_A          243 QTRSFTFIDECVEGVLRLTKSD-FREPVNIGSDEMVSMNEMAEMVLSFEEKK-LPIH-HIPGPEGVRGRNSDNNLIKEKL  319 (379)
T ss_dssp             CEECCEEHHHHHHHHHHHHHSS-CCSCEEECCCCCEEHHHHHHHHHHTTTCC-CCEE-EECCCCCCSBCEECCHHHHHHH
T ss_pred             eeEEEEEHHHHHHHHHHHhhcc-CCCeEEeCCCCccCHHHHHHHHHHHhCCC-Ccee-eCCCCCCcccccCCHHHHHHHh
Confidence            4 79999999999999999876 56789875 57899999999999988732 1110 111111234567899999 889


Q ss_pred             CCccccChhhhHHHHHHHHHHc
Q 020104          307 GFRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       307 g~~~~~~~~e~i~~~~~~~~~~  328 (331)
                      ||+|+++++|+|+++++||+++
T Consensus       320 G~~p~~~l~e~l~~~~~~~~~~  341 (379)
T 2c5a_A          320 GWAPNMRLKEGLRITYFWIKEQ  341 (379)
T ss_dssp             SCCCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999764

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=100.00  E-value=1.1e-44  Score=318.17  Aligned_cols=297  Identities=19%  Similarity=0.249  Sum_probs=229.0

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--C
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--G   82 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~   82 (331)
                      ||+|||||||||||++++++|+++|++|++++|+..     ...  ..   +.   .+++++.+|+.|.+++.++++  +
T Consensus         1 M~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-----~~~--~~---~~---~~~~~~~~D~~~~~~~~~~~~~~~   67 (330)
T 2c20_A            1 MNSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQT-----GHE--DA---IT---EGAKFYNGDLRDKAFLRDVFTQEN   67 (330)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS-----CCG--GG---SC---TTSEEEECCTTCHHHHHHHHHHSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCc-----Cch--hh---cC---CCcEEEECCCCCHHHHHHHHhhcC
Confidence            468999999999999999999999999999999762     111  11   11   368899999999999999998  8


Q ss_pred             ccEEEEecccCCCC--CCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhh
Q 020104           83 CTGVLHVATPVDFE--DKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRK  160 (331)
Q Consensus        83 ~d~Vih~a~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~  160 (331)
                      +|+|||+|+.....  ..++. ..+++|+.++.+++++|++.+ +++|||+||.++|+  .....+++|+++        
T Consensus        68 ~d~vih~a~~~~~~~~~~~~~-~~~~~n~~~~~~l~~a~~~~~-~~~~v~~Ss~~~~~--~~~~~~~~E~~~--------  135 (330)
T 2c20_A           68 IEAVMHFAADSLVGVSMEKPL-QYYNNNVYGALCLLEVMDEFK-VDKFIFSSTAATYG--EVDVDLITEETM--------  135 (330)
T ss_dssp             EEEEEECCCCCCHHHHHHSHH-HHHHHHHHHHHHHHHHHHHTT-CCEEEEECCGGGGC--SCSSSSBCTTSC--------
T ss_pred             CCEEEECCcccCccccccCHH-HHHHHHhHHHHHHHHHHHHcC-CCEEEEeCCceeeC--CCCCCCCCcCCC--------
Confidence            99999999975421  12444 789999999999999999988 89999999999985  334567888875        


Q ss_pred             cCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCC-------CCccHHHHHHHHhCCCc---ccc----
Q 020104          161 LDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPK-------FAGSVRSSLALILGNRE---EYG----  226 (331)
Q Consensus       161 ~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~-------~~~~~~~~~~~~~~~~~---~~~----  226 (331)
                       ..|.+.|+.+|..+|.+++.++.+++++++++||+++||++....       ....+..+.....+...   .++    
T Consensus       136 -~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  214 (330)
T 2c20_A          136 -TNPTNTYGETKLAIEKMLHWYSQASNLRYKIFRYFNVAGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYN  214 (330)
T ss_dssp             -CCCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEECSEEECCCTTCSSCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCCS
T ss_pred             -CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEecCcccCCCCcCccccccccccchHHHHHHHHhhcCCCeEEeCCccc
Confidence             245778999999999999999988899999999999999974321       12233333443443322   122    


Q ss_pred             --cCCC-ccceeHHHHHHHHHHhhcCCC---CCceEEEe-ccccCHHHHHHHHHhhCCCCCCCCccCCcc-ccCCcCccc
Q 020104          227 --FLLN-TSMVHVDDVARAHIFLLEYPD---AKGRYICS-SHTLTIQEMAEFLSAKYPEYPIPTVDSLAE-IEGYRAPGS  298 (331)
Q Consensus       227 --~~~~-~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~-~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~  298 (331)
                        .+.. ++|+|++|+|++++.+++++.   .+++||++ ++.+|+.|+++.+.+.+|.. ++.. ..+. ........+
T Consensus       215 ~~~g~~~~~~v~v~Dva~a~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~-~~~~-~~~~~~~~~~~~~~  292 (330)
T 2c20_A          215 TPDGTCIRDYIHVEDLVAAHFLGLKDLQNGGESDFYNLGNGNGFSVKEIVDAVREVTNHE-IPAE-VAPRRAGDPARLVA  292 (330)
T ss_dssp             SSSSSCEECEEEHHHHHHHHHHHHHHHHTTCCCEEEECCCTTCBCHHHHHHHHHHHTTSC-CCEE-EECCCSSCCSEECB
T ss_pred             cCCCceeEeeEeHHHHHHHHHHHHhccccCCCCCeEEeCCCCCccHHHHHHHHHHHhCCC-Ccee-eCCCCCCccccccc
Confidence              2333 799999999999999997642   35789975 57899999999999998732 2210 1111 122345778


Q ss_pred             CcHHH-HHcCCcccc-ChhhhHHHHHHHHHHcC
Q 020104          299 SSKKL-LDAGFRYNY-GIDEMFDEAIQCCKEKG  329 (331)
Q Consensus       299 ~~~k~-~~lg~~~~~-~~~e~i~~~~~~~~~~~  329 (331)
                      |++|+ +.|||+|++ +++|+|+++++||+++.
T Consensus       293 d~~k~~~~lG~~p~~~~l~~~l~~~~~~~~~~~  325 (330)
T 2c20_A          293 SSQKAKEKLGWDPRYVNVKTIIEHAWNWHQKQP  325 (330)
T ss_dssp             CCHHHHHHHCCCCSCCCHHHHHHHHHHHHHHCS
T ss_pred             CHHHHHHHhCCCCccCCHHHHHHHHHHHHHHhh
Confidence            99999 789999999 99999999999998763

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=100.00  E-value=4.8e-45  Score=323.27  Aligned_cols=306  Identities=18%  Similarity=0.144  Sum_probs=232.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCC--CCCcEEEEeCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPG--ASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      .||+|||||||||||++++++|++.|++|++++|+..    .....+..+.+...  ...+++++.+|+.|.+++.++++
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~  101 (352)
T 1sb8_A           26 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFAT----GHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACA  101 (352)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS----CCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHT
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCc----cchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhc
Confidence            4679999999999999999999999999999999762    11112221111000  01478999999999999999999


Q ss_pred             CccEEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhh
Q 020104           82 GCTGVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIR  159 (331)
Q Consensus        82 ~~d~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~  159 (331)
                      ++|+|||+|+....  ...++. ..+++|+.++.+++++|++.+ +++|||+||.++|+  .....+++|+++       
T Consensus       102 ~~d~vih~A~~~~~~~~~~~~~-~~~~~n~~~~~~l~~a~~~~~-~~~~v~~SS~~~~~--~~~~~~~~E~~~-------  170 (352)
T 1sb8_A          102 GVDYVLHQAALGSVPRSINDPI-TSNATNIDGFLNMLIAARDAK-VQSFTYAASSSTYG--DHPGLPKVEDTI-------  170 (352)
T ss_dssp             TCSEEEECCSCCCHHHHHHCHH-HHHHHHTHHHHHHHHHHHHTT-CSEEEEEEEGGGGT--TCCCSSBCTTCC-------
T ss_pred             CCCEEEECCcccCchhhhhCHH-HHHHHHHHHHHHHHHHHHHcC-CCEEEEeccHHhcC--CCCCCCCCCCCC-------
Confidence            99999999997542  112444 789999999999999999988 89999999999985  334467888875       


Q ss_pred             hcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCC--CCccHHHHH-HHHhCCCcc-cccCCC-ccce
Q 020104          160 KLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPK--FAGSVRSSL-ALILGNREE-YGFLLN-TSMV  234 (331)
Q Consensus       160 ~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~--~~~~~~~~~-~~~~~~~~~-~~~~~~-~~~i  234 (331)
                        ..|.+.|+.+|..+|.+++.++.+++++++++||+.+|||+....  ....+..+. ....+.+.. ++.+.. ++|+
T Consensus       171 --~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i  248 (352)
T 1sb8_A          171 --GKPLSPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFC  248 (352)
T ss_dssp             --CCCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCE
T ss_pred             --CCCCChhHHHHHHHHHHHHHHHHHcCCCEEEEEECceeCcCCCCCcchhhHHHHHHHHHHCCCCcEEeCCCCceEeeE
Confidence              356779999999999999999888899999999999999986543  112233333 233454432 344434 7999


Q ss_pred             eHHHHHHHHHHhhcCC--CCCceEEEe-ccccCHHHHHHHHHhhC---CCC-CCCCccCCcc--ccCCcCcccCcHHH-H
Q 020104          235 HVDDVARAHIFLLEYP--DAKGRYICS-SHTLTIQEMAEFLSAKY---PEY-PIPTVDSLAE--IEGYRAPGSSSKKL-L  304 (331)
Q Consensus       235 ~v~D~a~~~~~~~~~~--~~~~~~~~~-~~~~s~~e~~~~i~~~~---~~~-~~~~~~~~~~--~~~~~~~~~~~~k~-~  304 (331)
                      |++|+|++++.++.+.  ..+++||++ ++.+|+.|+++.+.+.+   |.. ...+  .+..  ........+|++|+ +
T Consensus       249 ~v~Dva~a~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~d~~k~~~  326 (352)
T 1sb8_A          249 YIENTVQANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREP--VYRDFREGDVRHSLADISKAAK  326 (352)
T ss_dssp             EHHHHHHHHHHHHTCCGGGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCC--EEECCCTTCCSBCCBCCHHHHH
T ss_pred             EHHHHHHHHHHHHhccccCCCceEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCCc--eecCCCccchhhccCCHHHHHH
Confidence            9999999999988762  356789975 67899999999999988   621 1111  1111  12234567899999 7


Q ss_pred             HcCCccccChhhhHHHHHHHHHHc
Q 020104          305 DAGFRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       305 ~lg~~~~~~~~e~i~~~~~~~~~~  328 (331)
                      .|||+|+++++|+|+++++||+++
T Consensus       327 ~lG~~p~~~~~e~l~~~~~~~~~~  350 (352)
T 1sb8_A          327 LLGYAPKYDVSAGVALAMPWYIMF  350 (352)
T ss_dssp             HTCCCCCCCHHHHHHHHHHHHHHH
T ss_pred             HhCCCCCCCHHHHHHHHHHHHHHh
Confidence            899999999999999999999764

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=100.00  E-value=1.1e-44  Score=317.05  Aligned_cols=296  Identities=17%  Similarity=0.144  Sum_probs=228.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG-   82 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~-   82 (331)
                      ++|+|||||||||||++++++|+++|++|++++|+..     . ..      +     +++++.+|+.|++++.+++++ 
T Consensus        11 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~-----~-~~------l-----~~~~~~~Dl~d~~~~~~~~~~~   73 (321)
T 2pk3_A           11 GSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNE-----A-KL------P-----NVEMISLDIMDSQRVKKVISDI   73 (321)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTT-----C-CC------T-----TEEEEECCTTCHHHHHHHHHHH
T ss_pred             CcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc-----c-cc------c-----eeeEEECCCCCHHHHHHHHHhc
Confidence            4578999999999999999999999999999999872     1 11      1     578999999999999999875 


Q ss_pred             -ccEEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhh
Q 020104           83 -CTGVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIR  159 (331)
Q Consensus        83 -~d~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~  159 (331)
                       +|+|||+|+....  ...++. ..+++|+.++.+++++|++.+.+++|||+||.++|+.......+++|+++       
T Consensus        74 ~~d~vih~A~~~~~~~~~~~~~-~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~E~~~-------  145 (321)
T 2pk3_A           74 KPDYIFHLAAKSSVKDSWLNKK-GTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEENQ-------  145 (321)
T ss_dssp             CCSEEEECCSCCCHHHHTTCHH-HHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGTBSCCGGGCSBCTTSC-------
T ss_pred             CCCEEEEcCcccchhhhhhcHH-HHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhcCCCCCCCCCCCCCCC-------
Confidence             9999999997542  223454 89999999999999999876227899999999998632114567888875       


Q ss_pred             hcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHH-Hh---C--CC-cccccCCC-c
Q 020104          160 KLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLAL-IL---G--NR-EEYGFLLN-T  231 (331)
Q Consensus       160 ~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~-~~---~--~~-~~~~~~~~-~  231 (331)
                        ..|.+.|+.+|.++|.+++.++.+++++++++||+++|||+....  ..+..+... ..   +  .+ ..++.+.. +
T Consensus       146 --~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  221 (321)
T 2pk3_A          146 --LRPMSPYGVSKASVGMLARQYVKAYGMDIIHTRTFNHIGPGQSLG--FVTQDFAKQIVDIEMEKQEPIIKVGNLEAVR  221 (321)
T ss_dssp             --CBCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCTT--SHHHHHHHHHHHHHTTSSCSEEEESCSSCEE
T ss_pred             --CCCCCccHHHHHHHHHHHHHHHHHcCCCEEEEEeCcccCcCCCCC--chHHHHHHHHHHHhcCCCCCeEEeCCCCcEE
Confidence              245678999999999999999888899999999999999986542  122222222 22   4  23 23343333 7


Q ss_pred             cceeHHHHHHHHHHhhcCCCCCceEEEe-ccccCHHHHHHHHHhhCCCC-CCCCccCCccccCCcCcccCcHHH-HHcCC
Q 020104          232 SMVHVDDVARAHIFLLEYPDAKGRYICS-SHTLTIQEMAEFLSAKYPEY-PIPTVDSLAEIEGYRAPGSSSKKL-LDAGF  308 (331)
Q Consensus       232 ~~i~v~D~a~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~k~-~~lg~  308 (331)
                      +|+|++|+|++++.++.++..+++||++ ++.+|+.|+++.+.+.+|.. .+................+|++|+ +.|||
T Consensus       222 ~~v~v~Dva~a~~~~~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~d~~k~~~~lG~  301 (321)
T 2pk3_A          222 DFTDVRDIVQAYWLLSQYGKTGDVYNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQLRPSEVPTLIGSNKRLKDSTGW  301 (321)
T ss_dssp             EEEEHHHHHHHHHHHHHHCCTTCEEEESCSCEEEHHHHHHHHHHHSSSCCEEEECGGGCCSSCCSBCCBCCHHHHHHHCC
T ss_pred             eeEEHHHHHHHHHHHHhCCCCCCeEEeCCCCCeeHHHHHHHHHHHhCCCCceeeccccCCCcccchhccCHHHHHHHcCC
Confidence            9999999999999999877667899975 56899999999999998832 111100001112235678999999 77999


Q ss_pred             ccccChhhhHHHHHHHHHHc
Q 020104          309 RYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       309 ~~~~~~~e~i~~~~~~~~~~  328 (331)
                      +|+++++|+|+++++||+++
T Consensus       302 ~p~~~~~e~l~~~~~~~~~~  321 (321)
T 2pk3_A          302 KPRIPLEKSLFEILQSYRQA  321 (321)
T ss_dssp             CCCSCHHHHHHHHHHHHHTC
T ss_pred             CcCCCHHHHHHHHHHHHhcC
Confidence            99999999999999999763

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=100.00  E-value=2e-44  Score=318.01  Aligned_cols=296  Identities=20%  Similarity=0.280  Sum_probs=221.4

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      +|+|||||||||||++++++|+++|++|++++|++     .....+.   .     .+++++.+|+.|.+++.++++++|
T Consensus        13 ~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~-----~~~~~l~---~-----~~~~~~~~Dl~d~~~~~~~~~~~d   79 (342)
T 2x4g_A           13 HVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPS-----SQIQRLA---Y-----LEPECRVAEMLDHAGLERALRGLD   79 (342)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTT-----SCGGGGG---G-----GCCEEEECCTTCHHHHHHHTTTCS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCh-----Hhhhhhc---c-----CCeEEEEecCCCHHHHHHHHcCCC
Confidence            46899999999999999999999999999999987     2222221   1     368899999999999999999999


Q ss_pred             EEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCCC
Q 020104           85 GVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSW  164 (331)
Q Consensus        85 ~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~  164 (331)
                      +|||+|+.......++. ..+++|+.++.+++++|++.+ +++|||+||.++|+.......+ +|+++.         .|
T Consensus        80 ~vih~a~~~~~~~~~~~-~~~~~n~~~~~~l~~a~~~~~-~~~~v~~SS~~~~~~~~~~~~~-~E~~~~---------~p  147 (342)
T 2x4g_A           80 GVIFSAGYYPSRPRRWQ-EEVASALGQTNPFYAACLQAR-VPRILYVGSAYAMPRHPQGLPG-HEGLFY---------DS  147 (342)
T ss_dssp             EEEEC-------------CHHHHHHHHHHHHHHHHHHHT-CSCEEEECCGGGSCCCTTSSCB-CTTCCC---------SS
T ss_pred             EEEECCccCcCCCCCHH-HHHHHHHHHHHHHHHHHHHcC-CCeEEEECCHHhhCcCCCCCCC-CCCCCC---------Cc
Confidence            99999997654334454 889999999999999999998 8999999999998633222234 777752         34


Q ss_pred             ----CchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCC-CCCCCccHHHHHHHHhCCCcccccCCCccceeHHHH
Q 020104          165 ----GKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFI-CPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDV  239 (331)
Q Consensus       165 ----~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~  239 (331)
                          .+.|+.+|..+|.+++.++.. +++++++||+.+||++. .+...   ..+.....+....+ ....++|+|++|+
T Consensus       148 ~~~~~~~Y~~sK~~~e~~~~~~~~~-g~~~~ilrp~~v~g~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~i~v~Dv  222 (342)
T 2x4g_A          148 LPSGKSSYVLCKWALDEQAREQARN-GLPVVIGIPGMVLGELDIGPTTG---RVITAIGNGEMTHY-VAGQRNVIDAAEA  222 (342)
T ss_dssp             CCTTSCHHHHHHHHHHHHHHHHHHT-TCCEEEEEECEEECSCCSSCSTT---HHHHHHHTTCCCEE-ECCEEEEEEHHHH
T ss_pred             cccccChHHHHHHHHHHHHHHHhhc-CCcEEEEeCCceECCCCccccHH---HHHHHHHcCCCccc-cCCCcceeeHHHH
Confidence                678999999999999998876 99999999999999986 32111   11222334444333 2222789999999


Q ss_pred             HHHHHHhhcCCCCCceEEEeccccCHHHHHHHHHhhCCCC-C--CCCccC------------C-c-------c-c-cCCc
Q 020104          240 ARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEY-P--IPTVDS------------L-A-------E-I-EGYR  294 (331)
Q Consensus       240 a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~~~~-~--~~~~~~------------~-~-------~-~-~~~~  294 (331)
                      |++++.+++++..+++||+++..+|+.|+++.+.+.+|.. .  +|....            . .       . . ....
T Consensus       223 a~~~~~~~~~~~~g~~~~v~~~~~s~~e~~~~i~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (342)
T 2x4g_A          223 GRGLLMALERGRIGERYLLTGHNLEMADLTRRIAELLGQPAPQPMSMAMARALATLGRLRYRVSGQLPLLDETAIEVMAG  302 (342)
T ss_dssp             HHHHHHHHHHSCTTCEEEECCEEEEHHHHHHHHHHHHTCCCCEEECHHHHHHHHHHHHC----------------CCTTC
T ss_pred             HHHHHHHHhCCCCCceEEEcCCcccHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHhc
Confidence            9999999987766779997653399999999999988732 1  121000            0 0       0 0 0124


Q ss_pred             CcccCcHHH-HHcCC-ccccChhhhHHHHHHHHHHcCCC
Q 020104          295 APGSSSKKL-LDAGF-RYNYGIDEMFDEAIQCCKEKGYL  331 (331)
Q Consensus       295 ~~~~~~~k~-~~lg~-~~~~~~~e~i~~~~~~~~~~~~~  331 (331)
                      ...+|++|+ +.||| +| ++++++++++++||+++|+|
T Consensus       303 ~~~~d~~k~~~~lG~~~p-~~~~~~l~~~~~~~~~~g~~  340 (342)
T 2x4g_A          303 GQFLDGRKAREELGFFST-TALDDTLLRAIDWFRDNGYF  340 (342)
T ss_dssp             CCCBCCHHHHHHHCCCCC-SCHHHHHHHHHHHHHHTTCC
T ss_pred             CcccChHHHHHhCCCCCC-CCHHHHHHHHHHHHHHcCCC
Confidence            677899999 77999 99 79999999999999999875

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=100.00  E-value=2.1e-45  Score=328.04  Aligned_cols=305  Identities=18%  Similarity=0.256  Sum_probs=231.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHC-CCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCC-CCccHHHHhc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDH-GYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLS-HPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~   81 (331)
                      +||+|||||||||||++|+++|+++ |++|++++|+.     .....+.   .    ..+++++.+|+. |.+.+.++++
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~-----~~~~~~~---~----~~~v~~~~~Dl~~d~~~~~~~~~   90 (372)
T 3slg_A           23 KAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQT-----DRLGDLV---K----HERMHFFEGDITINKEWVEYHVK   90 (372)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCC-----TTTGGGG---G----STTEEEEECCTTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCCh-----hhhhhhc---c----CCCeEEEeCccCCCHHHHHHHhc
Confidence            4579999999999999999999998 99999999987     2222221   1    158999999999 8999999999


Q ss_pred             CccEEEEecccCCCC--CCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhh
Q 020104           82 GCTGVLHVATPVDFE--DKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIR  159 (331)
Q Consensus        82 ~~d~Vih~a~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~  159 (331)
                      ++|+|||+|+.....  ..++. ..+++|+.++.+++++|++.+  ++|||+||.++|+  .....+++|+++...  ..
T Consensus        91 ~~d~Vih~A~~~~~~~~~~~~~-~~~~~nv~~~~~ll~a~~~~~--~~~v~~SS~~vyg--~~~~~~~~e~~~~~~--~~  163 (372)
T 3slg_A           91 KCDVILPLVAIATPATYVKQPL-RVFELDFEANLPIVRSAVKYG--KHLVFPSTSEVYG--MCADEQFDPDASALT--YG  163 (372)
T ss_dssp             HCSEEEECBCCCCHHHHHHCHH-HHHHHHTTTTHHHHHHHHHHT--CEEEEECCGGGGB--SCCCSSBCTTTCCEE--EC
T ss_pred             cCCEEEEcCccccHHHHhhCHH-HHHHHHHHHHHHHHHHHHHhC--CcEEEeCcHHHhC--CCCCCCCCccccccc--cC
Confidence            999999999976522  23454 788999999999999999998  7999999999986  344567777764210  01


Q ss_pred             hcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCC------CccHHHHH-HHHhCCCccc-ccCCC-
Q 020104          160 KLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKF------AGSVRSSL-ALILGNREEY-GFLLN-  230 (331)
Q Consensus       160 ~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~------~~~~~~~~-~~~~~~~~~~-~~~~~-  230 (331)
                      +...|.+.|+.+|..+|++++.++.+ +++++++||+.+|||+..+..      ...+..+. ....+....+ +.+.. 
T Consensus       164 p~~~p~~~Y~~sK~~~E~~~~~~~~~-g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  242 (372)
T 3slg_A          164 PINKPRWIYACSKQLMDRVIWGYGME-GLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQK  242 (372)
T ss_dssp             CTTCTTHHHHHHHHHHHHHHHHHHTT-TCEEEEEEECSEECSSCCCTTCSBSCSCHHHHHHHHHHHHTCCEEEGGGGCCE
T ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHC-CCCEEEEccccccCCCcccccccccccchHHHHHHHHHHcCCCcEEeCCCceE
Confidence            22256779999999999999999877 999999999999999865311      22333333 3344554333 33334 


Q ss_pred             ccceeHHHHHHHHHHhhcCCC---CCceEEEec--cccCHHHHHHHHHhhCCCC-CCCCc---cCCc--------c--cc
Q 020104          231 TSMVHVDDVARAHIFLLEYPD---AKGRYICSS--HTLTIQEMAEFLSAKYPEY-PIPTV---DSLA--------E--IE  291 (331)
Q Consensus       231 ~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~--~~~s~~e~~~~i~~~~~~~-~~~~~---~~~~--------~--~~  291 (331)
                      ++|+|++|+|++++.+++++.   .+++||+++  +.+|+.|+++.+.+.+|.. .+...   ....        .  ..
T Consensus       243 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~~ni~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (372)
T 3slg_A          243 RAFTYVDDGISALMKIIENSNGVATGKIYNIGNPNNNFSVRELANKMLELAAEFPEYADSAKRVKLVETTSGAYYGNGYQ  322 (372)
T ss_dssp             EECEEHHHHHHHHHHHHHCGGGTTTTEEEEECCTTCEEEHHHHHHHHHHHHHHCTTTHHHHHTCCEEEC-----------
T ss_pred             EEEEEHHHHHHHHHHHHhcccCcCCCceEEeCCCCCCccHHHHHHHHHHHhCCCcccccccccceeeeccccccccCCcc
Confidence            799999999999999999874   577999765  5899999999999977621 11000   0000        0  01


Q ss_pred             CCcCcccCcHHH-HHcCCccccChhhhHHHHHHHHHHc
Q 020104          292 GYRAPGSSSKKL-LDAGFRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       292 ~~~~~~~~~~k~-~~lg~~~~~~~~e~i~~~~~~~~~~  328 (331)
                      ......+|++|+ +.|||+|+++++++|+++++||+++
T Consensus       323 ~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~  360 (372)
T 3slg_A          323 DVQNRVPKIENTMQELGWAPQFTFDDALRQIFEAYRGH  360 (372)
T ss_dssp             --CCCCBCCHHHHHHHTCCCCCCHHHHHHHHHHHHTTC
T ss_pred             ccceeecCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHH
Confidence            334677899999 7899999999999999999999754

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=100.00  E-value=2.9e-44  Score=317.81  Aligned_cols=304  Identities=17%  Similarity=0.208  Sum_probs=230.2

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHC--CCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHH
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDH--GYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDA   78 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~   78 (331)
                      |+. ||+|||||||||||++++++|+++  |++|++++|+...   .....+..+   .  ..+++++.+|+.|.+++.+
T Consensus         1 Ms~-m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~---~~~~~~~~~---~--~~~~~~~~~Dl~d~~~~~~   71 (348)
T 1oc2_A            1 MSQ-FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYA---GNKANLEAI---L--GDRVELVVGDIADAELVDK   71 (348)
T ss_dssp             --C-CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTT---CCGGGTGGG---C--SSSEEEEECCTTCHHHHHH
T ss_pred             CCc-CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCC---CChhHHhhh---c--cCCeEEEECCCCCHHHHHH
Confidence            654 579999999999999999999998  8999999997521   111122211   1  1578999999999999999


Q ss_pred             HhcCccEEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCC----------CCCc
Q 020104           79 AIAGCTGVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDK----------DVDM  146 (331)
Q Consensus        79 ~~~~~d~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~----------~~~~  146 (331)
                      +++++|+|||+|+....  ...++. ..+++|+.++.+++++|.+.+ + +|||+||.++|+....          ...+
T Consensus        72 ~~~~~d~vih~A~~~~~~~~~~~~~-~~~~~Nv~g~~~l~~a~~~~~-~-~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~  148 (348)
T 1oc2_A           72 LAAKADAIVHYAAESHNDNSLNDPS-PFIHTNFIGTYTLLEAARKYD-I-RFHHVSTDEVYGDLPLREDLPGHGEGPGEK  148 (348)
T ss_dssp             HHTTCSEEEECCSCCCHHHHHHCCH-HHHHHHTHHHHHHHHHHHHHT-C-EEEEEEEGGGGCCBCCGGGSTTTTCSTTSS
T ss_pred             HhhcCCEEEECCcccCccchhhCHH-HHHHHHHHHHHHHHHHHHHhC-C-eEEEecccceeCCCcccccccccccccCCC
Confidence            99999999999997541  112444 789999999999999999998 7 9999999999863221          1156


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHH-HHHhCCCcc-
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSL-ALILGNREE-  224 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~~~~~~~-  224 (331)
                      ++|+++         ..|.+.|+.+|..+|.+++.++.+++++++++||+.+||++....  ..+..+. ....+.... 
T Consensus       149 ~~E~~~---------~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~  217 (348)
T 1oc2_A          149 FTAETN---------YNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIE--KFIPRQITNILAGIKPKL  217 (348)
T ss_dssp             BCTTSC---------CCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTT--SHHHHHHHHHHHTCCCEE
T ss_pred             cCCCCC---------CCCCCccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCCCcc--chHHHHHHHHHcCCCceE
Confidence            777764         345679999999999999999888899999999999999986431  2233333 233444433 


Q ss_pred             cccCCC-ccceeHHHHHHHHHHhhcCCCCCceEEEe-ccccCHHHHHHHHHhhCCCCCCCCccCCccc-cCCcCcccCcH
Q 020104          225 YGFLLN-TSMVHVDDVARAHIFLLEYPDAKGRYICS-SHTLTIQEMAEFLSAKYPEYPIPTVDSLAEI-EGYRAPGSSSK  301 (331)
Q Consensus       225 ~~~~~~-~~~i~v~D~a~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  301 (331)
                      ++.+.. ++|+|++|+|++++.+++++..+++||++ ++.+|+.|+++.+.+.+|...... ...... .......+|++
T Consensus       218 ~~~~~~~~~~i~v~Dva~~~~~~~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~-~~~~~~~~~~~~~~~d~~  296 (348)
T 1oc2_A          218 YGEGKNVRDWIHTNDHSTGVWAILTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAY-DHVTDRAGHDLRYAIDAS  296 (348)
T ss_dssp             ETTSCCEEECEEHHHHHHHHHHHHHHCCTTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCS-EEECCCTTCCCBCCBCCH
T ss_pred             ecCCCceEeeEEHHHHHHHHHHHhhCCCCCCeEEeCCCCCCCHHHHHHHHHHHhCCCcccc-ccCCCCCCcccccccCHH
Confidence            344434 79999999999999999876667799975 568999999999999988322111 011111 12234568999


Q ss_pred             HH-HHcCCccccC-hhhhHHHHHHHHHHc
Q 020104          302 KL-LDAGFRYNYG-IDEMFDEAIQCCKEK  328 (331)
Q Consensus       302 k~-~~lg~~~~~~-~~e~i~~~~~~~~~~  328 (331)
                      |+ +.|||+|+++ ++++++++++||+++
T Consensus       297 k~~~~lG~~p~~~~~~~~l~~~~~~~~~~  325 (348)
T 1oc2_A          297 KLRDELGWTPQFTDFSEGLEETIQWYTDN  325 (348)
T ss_dssp             HHHHHHCCCCSCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCCCCCCcHHHHHHHHHHHHHHh
Confidence            99 7799999998 999999999999764

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=100.00  E-value=6.7e-44  Score=313.95  Aligned_cols=302  Identities=20%  Similarity=0.228  Sum_probs=228.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      +|+|||||||||||++++++|+++|  ++|++++|+...   ...+.+   .++. ...+++++.+|+.|.+++.+++.+
T Consensus         3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~---~~~~~~---~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~   75 (336)
T 2hun_A            3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYG---SNPANL---KDLE-DDPRYTFVKGDVADYELVKELVRK   75 (336)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTT---CCGGGG---TTTT-TCTTEEEEECCTTCHHHHHHHHHT
T ss_pred             CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCccc---CchhHH---hhhc-cCCceEEEEcCCCCHHHHHHHhhC
Confidence            3589999999999999999999986  899999987510   111222   1111 125789999999999999999999


Q ss_pred             ccEEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhh
Q 020104           83 CTGVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRK  160 (331)
Q Consensus        83 ~d~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~  160 (331)
                      +|+|||+|+....  ...++. ..+++|+.++.+++++|.+.+..++|||+||.++|+.  ....+++|+++        
T Consensus        76 ~d~vih~A~~~~~~~~~~~~~-~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~--~~~~~~~E~~~--------  144 (336)
T 2hun_A           76 VDGVVHLAAESHVDRSISSPE-IFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGD--ILKGSFTENDR--------  144 (336)
T ss_dssp             CSEEEECCCCCCHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCC--CSSSCBCTTBC--------
T ss_pred             CCEEEECCCCcChhhhhhCHH-HHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCC--CCCCCcCCCCC--------
Confidence            9999999997541  122444 7899999999999999999862379999999999863  33457888874        


Q ss_pred             cCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHH-HHhCCCcc-cccCCC-ccceeHH
Q 020104          161 LDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLA-LILGNREE-YGFLLN-TSMVHVD  237 (331)
Q Consensus       161 ~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~-~~~i~v~  237 (331)
                       ..|.+.|+.+|..+|.+++.++.+++++++++||+.+|||+..+.  ..+..+.. ...+.... ++.+.. ++|+|++
T Consensus       145 -~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~  221 (336)
T 2hun_A          145 -LMPSSPYSATKAASDMLVLGWTRTYNLNASITRCTNNYGPYQFPE--KLIPKTIIRASLGLKIPIYGTGKNVRDWLYVE  221 (336)
T ss_dssp             -CCCCSHHHHHHHHHHHHHHHHHHHTTCEEEEEEECEEESTTCCTT--SHHHHHHHHHHTTCCEEEETC---CEEEEEHH
T ss_pred             -CCCCCccHHHHHHHHHHHHHHHHHhCCCEEEEeeeeeeCcCCCcC--chHHHHHHHHHcCCCceEeCCCCceeeeEEHH
Confidence             345678999999999999999988899999999999999986431  22333333 33444332 344333 7999999


Q ss_pred             HHHHHHHHhhcCCCCCceEEEec-cccCHHHHHHHHHhhCCCCCCCCccCCcc-ccCCcCcccCcHHH-HHcCCccccCh
Q 020104          238 DVARAHIFLLEYPDAKGRYICSS-HTLTIQEMAEFLSAKYPEYPIPTVDSLAE-IEGYRAPGSSSKKL-LDAGFRYNYGI  314 (331)
Q Consensus       238 D~a~~~~~~~~~~~~~~~~~~~~-~~~s~~e~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~-~~lg~~~~~~~  314 (331)
                      |+|++++.+++++..+++||+++ +.+|+.|+++.+.+.+|... +....... ........+|++|+ +.|||+|++++
T Consensus       222 Dva~~~~~~~~~~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~-~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~  300 (336)
T 2hun_A          222 DHVRAIELVLLKGESREIYNISAGEEKTNLEVVKIILRLMGKGE-ELIELVEDRPGHDLRYSLDSWKITRDLKWRPKYTF  300 (336)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEECCSCEECHHHHHHHHHHHTTCCS-TTEEEECCCTTCCCCCCBCCHHHHHHHCCCCSSCH
T ss_pred             HHHHHHHHHHhCCCCCCEEEeCCCCcccHHHHHHHHHHHhCCCc-ccccccCCCCCchhhhcCCHHHHHHHhCCCCCCCH
Confidence            99999999998766677999754 67999999999999988321 11001111 11223457899999 77999999999


Q ss_pred             hhhHHHHHHHHHHc
Q 020104          315 DEMFDEAIQCCKEK  328 (331)
Q Consensus       315 ~e~i~~~~~~~~~~  328 (331)
                      +++|+++++||+++
T Consensus       301 ~~~l~~~~~~~~~~  314 (336)
T 2hun_A          301 DEGIKKTIDWYLKN  314 (336)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999999765

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=100.00  E-value=1.6e-44  Score=320.49  Aligned_cols=303  Identities=17%  Similarity=0.111  Sum_probs=227.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG--   82 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--   82 (331)
                      +|+|||||||||||++|+++|+++|++|++++|+..     ....+.....   ...+++++.+|+.|++++.+++++  
T Consensus         9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-----~~~~~~~~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~~   80 (357)
T 1rkx_A            9 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP-----TVPSLFETAR---VADGMQSEIGDIRDQNKLLESIREFQ   80 (357)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS-----SSSCHHHHTT---TTTTSEEEECCTTCHHHHHHHHHHHC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCc-----ccchhhHhhc---cCCceEEEEccccCHHHHHHHHHhcC
Confidence            478999999999999999999999999999999872     2222111100   125789999999999999999875  


Q ss_pred             ccEEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhh
Q 020104           83 CTGVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRK  160 (331)
Q Consensus        83 ~d~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~  160 (331)
                      +|+|||+|+....  ...++. ..+++|+.++.+++++|++.+.+++|||+||.++|+.. ....+++|+++        
T Consensus        81 ~d~vih~A~~~~~~~~~~~~~-~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~-~~~~~~~E~~~--------  150 (357)
T 1rkx_A           81 PEIVFHMAAQPLVRLSYSEPV-ETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNK-EWIWGYRENEA--------  150 (357)
T ss_dssp             CSEEEECCSCCCHHHHHHCHH-HHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCC-CSSSCBCTTSC--------
T ss_pred             CCEEEECCCCcccccchhCHH-HHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCC-CcCCCCCCCCC--------
Confidence            8999999985331  123444 78999999999999999987547899999999998632 22346777764        


Q ss_pred             cCCCCchhHhhHHHHHHHHHHHHHHc---------CCcEEEeccCceeCCCCCCCCCccHHHHHHH-HhCCCcccccCCC
Q 020104          161 LDSWGKSYAISKTLTERAALEFAEEH---------GLDLVTLIPSMVVGPFICPKFAGSVRSSLAL-ILGNREEYGFLLN  230 (331)
Q Consensus       161 ~~~~~~~Y~~~K~~~e~~~~~~~~~~---------~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  230 (331)
                       ..|.+.|+.+|.++|++++.++.++         +++++++||+.+|||+.... ...+..+... ..+....++.+..
T Consensus       151 -~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~  228 (357)
T 1rkx_A          151 -MGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWAL-DRIVPDILRAFEQSQPVIIRNPHA  228 (357)
T ss_dssp             -BCCSSHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCS-SCHHHHHHHHHHTTCCEECSCTTC
T ss_pred             -CCCCCccHHHHHHHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCCCcc-ccHHHHHHHHHhcCCCEEECCCCC
Confidence             2456789999999999999988764         89999999999999976432 2233444433 3455444443333


Q ss_pred             -ccceeHHHHHHHHHHhhcC-----CCCCceEEEec---cccCHHHHHHHHHhhCCC-CCCCCccCCccccCCcCcccCc
Q 020104          231 -TSMVHVDDVARAHIFLLEY-----PDAKGRYICSS---HTLTIQEMAEFLSAKYPE-YPIPTVDSLAEIEGYRAPGSSS  300 (331)
Q Consensus       231 -~~~i~v~D~a~~~~~~~~~-----~~~~~~~~~~~---~~~s~~e~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  300 (331)
                       ++|+|++|+|++++.++.+     ...+++||+++   +.+|+.|+++.+.+.+|. ..+... ............+|+
T Consensus       229 ~~~~v~v~Dva~a~~~~~~~~~~~~~~~~~~~ni~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~-~~~~~~~~~~~~~d~  307 (357)
T 1rkx_A          229 IRPWQHVLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLD-GNAHPHEAHYLKLDC  307 (357)
T ss_dssp             EECCEETHHHHHHHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC--------CCCCCCBCC
T ss_pred             eeccEeHHHHHHHHHHHHHhhhhcCCCCCceEEECCCCCCcccHHHHHHHHHHHhCCCCccccC-CCCCCcCcccccCCH
Confidence             7999999999999998874     24567999763   579999999999998873 221110 001112345678999


Q ss_pred             HHH-HHcCCccccChhhhHHHHHHHHHHc
Q 020104          301 KKL-LDAGFRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       301 ~k~-~~lg~~~~~~~~e~i~~~~~~~~~~  328 (331)
                      +|+ +.|||+|+++++|+|+++++||+++
T Consensus       308 ~k~~~~lG~~p~~~l~e~l~~~~~~~~~~  336 (357)
T 1rkx_A          308 SKAKMQLGWHPRWNLNTTLEYIVGWHKNW  336 (357)
T ss_dssp             HHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCcCCcHHHHHHHHHHHHHHH
Confidence            999 7899999999999999999999764

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=100.00  E-value=4.5e-44  Score=314.97  Aligned_cols=305  Identities=16%  Similarity=0.125  Sum_probs=230.2

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      .++|+|||||||||||++++++|+++|++|++++|+....   ....+..+.    ...+++++.+|+.|.+++.+++++
T Consensus        12 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~---~~~~~~~~~----~~~~~~~~~~Dl~d~~~~~~~~~~   84 (335)
T 1rpn_A           12 SMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSD---TRWRLRELG----IEGDIQYEDGDMADACSVQRAVIK   84 (335)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSC---CCHHHHHTT----CGGGEEEEECCTTCHHHHHHHHHH
T ss_pred             ccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccc---cccchhhcc----ccCceEEEECCCCCHHHHHHHHHH
Confidence            3578999999999999999999999999999999987210   011111111    124789999999999999999874


Q ss_pred             --ccEEEEecccCCCC--CCChhhHHHHHHHHHHHHHHHHHHhcCCc-cEEEEecccceeecCCCCCCcccCCCCCChhh
Q 020104           83 --CTGVLHVATPVDFE--DKEPEEVITQRAINGTLGILKSCLKSGTV-KRVVYTSSNAAVFYNDKDVDMMDETFWSDVDY  157 (331)
Q Consensus        83 --~d~Vih~a~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~  157 (331)
                        +|+|||+|+.....  ..++. ..+++|+.++.+++++|++.+ + ++|||+||.++|+  .....+++|+++     
T Consensus        85 ~~~d~Vih~A~~~~~~~~~~~~~-~~~~~n~~~~~~l~~a~~~~~-~~~~~v~~SS~~v~g--~~~~~~~~E~~~-----  155 (335)
T 1rpn_A           85 AQPQEVYNLAAQSFVGASWNQPV-TTGVVDGLGVTHLLEAIRQFS-PETRFYQASTSEMFG--LIQAERQDENTP-----  155 (335)
T ss_dssp             HCCSEEEECCSCCCHHHHTTSHH-HHHHHHTHHHHHHHHHHHHHC-TTSEEEEEEEGGGGC--SCSSSSBCTTSC-----
T ss_pred             cCCCEEEECccccchhhhhhChH-HHHHHHHHHHHHHHHHHHHhC-CCCeEEEEeCHHHhC--CCCCCCCCcccC-----
Confidence              79999999975421  33555 889999999999999999987 6 8999999999985  334457888875     


Q ss_pred             hhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCC-ccHHHHH-HHHhCCCc--ccccCCC-cc
Q 020104          158 IRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFA-GSVRSSL-ALILGNRE--EYGFLLN-TS  232 (331)
Q Consensus       158 ~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~-~~~~~~~-~~~~~~~~--~~~~~~~-~~  232 (331)
                          ..|.+.|+.+|.++|.+++.++.+++++++++||+.+|||+...... ..+..++ ....+...  .++.+.. ++
T Consensus       156 ----~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~g~~~~~  231 (335)
T 1rpn_A          156 ----FYPRSPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRD  231 (335)
T ss_dssp             ----CCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEE
T ss_pred             ----CCCCChhHHHHHHHHHHHHHHHHHcCCcEEEEeeCcccCCCCCCCcchHHHHHHHHHHHcCCCceEEeCCCcceec
Confidence                34577899999999999999998889999999999999997643221 1122222 23344432  2344444 79


Q ss_pred             ceeHHHHHHHHHHhhcCCCCCceEEEe-ccccCHHHHHHHHHhhCCCCC---CCCccCCccccCCcCcccCcHHH-HHcC
Q 020104          233 MVHVDDVARAHIFLLEYPDAKGRYICS-SHTLTIQEMAEFLSAKYPEYP---IPTVDSLAEIEGYRAPGSSSKKL-LDAG  307 (331)
Q Consensus       233 ~i~v~D~a~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~k~-~~lg  307 (331)
                      |+|++|+|++++.+++++. +++||++ ++.+|+.|+++.+.+.+|...   ++...............+|++|+ +.||
T Consensus       232 ~i~v~Dva~a~~~~~~~~~-~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG  310 (335)
T 1rpn_A          232 WGFAGDYVEAMWLMLQQDK-ADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLG  310 (335)
T ss_dssp             CEEHHHHHHHHHHHHHSSS-CCCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGGCCSSCCCBCCBCTHHHHHHHC
T ss_pred             eEEHHHHHHHHHHHHhcCC-CCEEEEeCCCCccHHHHHHHHHHHhCCCccccccccccccCCCcchhhcCCHHHHHHhcC
Confidence            9999999999999998765 5789875 578999999999999988421   11100101112234567899999 7899


Q ss_pred             CccccChhhhHHHHHHHHHHc
Q 020104          308 FRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       308 ~~~~~~~~e~i~~~~~~~~~~  328 (331)
                      |+|+++++|+|+++++|++++
T Consensus       311 ~~p~~~l~e~l~~~~~~~~~~  331 (335)
T 1rpn_A          311 WKPRTSLDELIRMMVEADLRR  331 (335)
T ss_dssp             CCCCSCHHHHHHHHHHHHHHH
T ss_pred             CCcCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999764

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=100.00  E-value=9.9e-44  Score=313.01  Aligned_cols=300  Identities=24%  Similarity=0.272  Sum_probs=229.6

Q ss_pred             ceEEEecCcchhHHHHHHHHHHC---C---CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDH---G---YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~---g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      |+|||||||||||++++++|+++   |   ++|++++|+...   .....+..+.    ...+++++.+|+.|++++.++
T Consensus         1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~---~~~~~~~~~~----~~~~~~~~~~Dl~d~~~~~~~   73 (337)
T 1r6d_A            1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYA---GNRANLAPVD----ADPRLRFVHGDIRDAGLLARE   73 (337)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTT---CCGGGGGGGT----TCTTEEEEECCTTCHHHHHHH
T ss_pred             CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCcc---Cchhhhhhcc----cCCCeEEEEcCCCCHHHHHHH
Confidence            47999999999999999999997   8   999999997510   1112222211    125789999999999999999


Q ss_pred             hcCccEEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhh
Q 020104           80 IAGCTGVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDY  157 (331)
Q Consensus        80 ~~~~d~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~  157 (331)
                      +.++|+|||+|+....  ...++. ..+++|+.++.+++++|++.+ +++|||+||.++|+.  ....+++|+++     
T Consensus        74 ~~~~d~Vih~A~~~~~~~~~~~~~-~~~~~Nv~~~~~l~~a~~~~~-~~~~v~~SS~~vyg~--~~~~~~~E~~~-----  144 (337)
T 1r6d_A           74 LRGVDAIVHFAAESHVDRSIAGAS-VFTETNVQGTQTLLQCAVDAG-VGRVVHVSTNQVYGS--IDSGSWTESSP-----  144 (337)
T ss_dssp             TTTCCEEEECCSCCCHHHHHHCCH-HHHHHHTHHHHHHHHHHHHTT-CCEEEEEEEGGGGCC--CSSSCBCTTSC-----
T ss_pred             hcCCCEEEECCCccCchhhhhCHH-HHHHHHHHHHHHHHHHHHHcC-CCEEEEecchHHhCC--CCCCCCCCCCC-----
Confidence            9999999999996542  112444 789999999999999999998 899999999999863  33457788774     


Q ss_pred             hhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHH-HHhCCCcc-cccCCC-ccce
Q 020104          158 IRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLA-LILGNREE-YGFLLN-TSMV  234 (331)
Q Consensus       158 ~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~-~~~i  234 (331)
                          ..|.+.|+.+|..+|.+++.++.+++++++++||+.+|||+...  ...+..+.. ...+.... ++.+.. ++|+
T Consensus       145 ----~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  218 (337)
T 1r6d_A          145 ----LEPNSPYAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHP--EKLIPLFVTNLLDGGTLPLYGDGANVREWV  218 (337)
T ss_dssp             ----CCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCT--TSHHHHHHHHHHTTCCEEEETTSCCEEEEE
T ss_pred             ----CCCCCchHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeECCCCCC--CChHHHHHHHHhcCCCcEEeCCCCeeEeeE
Confidence                34577899999999999999988889999999999999998643  122333333 33444332 344444 7999


Q ss_pred             eHHHHHHHHHHhhcCCCCCceEEEec-cccCHHHHHHHHHhhCCCCCCCCccCCccc-cCCcCcccCcHHH-HHcCCccc
Q 020104          235 HVDDVARAHIFLLEYPDAKGRYICSS-HTLTIQEMAEFLSAKYPEYPIPTVDSLAEI-EGYRAPGSSSKKL-LDAGFRYN  311 (331)
Q Consensus       235 ~v~D~a~~~~~~~~~~~~~~~~~~~~-~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~-~~lg~~~~  311 (331)
                      |++|+|++++.+++++..+++||+++ +.+|+.|+++.+.+.+|... +........ .......+|++|+ +.|||+|+
T Consensus       219 ~v~Dva~a~~~~~~~~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~-~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~  297 (337)
T 1r6d_A          219 HTDDHCRGIALVLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADW-SSVRKVADRKGHDLRYSLDGGKIERELGYRPQ  297 (337)
T ss_dssp             EHHHHHHHHHHHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHHTCCG-GGEEEECCCTTCCCBCCBCCHHHHHHHCCCCC
T ss_pred             eHHHHHHHHHHHHhCCCCCCEEEeCCCCCccHHHHHHHHHHHhCCCc-ccceecCCCCCCcceeecCHHHHHHHcCCCCC
Confidence            99999999999998766677999754 67999999999999887321 100011111 1223456899999 78999999


Q ss_pred             cChhhhHHHHHHHHHHc
Q 020104          312 YGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       312 ~~~~e~i~~~~~~~~~~  328 (331)
                      ++++|+|+++++||+++
T Consensus       298 ~~~~e~l~~~~~~~~~~  314 (337)
T 1r6d_A          298 VSFADGLARTVRWYREN  314 (337)
T ss_dssp             SCHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHhc
Confidence            99999999999999764

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=100.00  E-value=9.2e-44  Score=317.77  Aligned_cols=301  Identities=19%  Similarity=0.169  Sum_probs=222.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      .+|+|||||||||||++++++|+++| ++|++++|+..     ...  ..+.    ...+++++.+|+.|++++.+++++
T Consensus        31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~-----~~~--~~l~----~~~~v~~~~~Dl~d~~~l~~~~~~   99 (377)
T 2q1s_A           31 ANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLS-----AEK--INVP----DHPAVRFSETSITDDALLASLQDE   99 (377)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTT-----CCG--GGSC----CCTTEEEECSCTTCHHHHHHCCSC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCC-----Cch--hhcc----CCCceEEEECCCCCHHHHHHHhhC
Confidence            35789999999999999999999999 99999999862     111  1111    125789999999999999999999


Q ss_pred             ccEEEEecccCCCC--CCChhhHHHHHHHHHHHHHHHHHHhc-CCccEEEEecccceeecCCCCCCccc--CCCCCChhh
Q 020104           83 CTGVLHVATPVDFE--DKEPEEVITQRAINGTLGILKSCLKS-GTVKRVVYTSSNAAVFYNDKDVDMMD--ETFWSDVDY  157 (331)
Q Consensus        83 ~d~Vih~a~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~~~~~--E~~~~~~~~  157 (331)
                      +|+|||+|+.....  ..++. ..+++|+.++.+++++|++. + +++|||+||.++|+.  ....+++  |+++.    
T Consensus       100 ~d~Vih~A~~~~~~~~~~~~~-~~~~~nv~~~~~ll~a~~~~~~-~~~~V~~SS~~vyg~--~~~~~~~~~E~~~~----  171 (377)
T 2q1s_A          100 YDYVFHLATYHGNQSSIHDPL-ADHENNTLTTLKLYERLKHFKR-LKKVVYSAAGCSIAE--KTFDDAKATEETDI----  171 (377)
T ss_dssp             CSEEEECCCCSCHHHHHHCHH-HHHHHHTHHHHHHHHHHTTCSS-CCEEEEEEEC----------------CCCCC----
T ss_pred             CCEEEECCCccCchhhhhCHH-HHHHHHHHHHHHHHHHHHHhCC-CCeEEEeCCHHHcCC--CCCCCcCccccccc----
Confidence            99999999975421  12444 78999999999999999998 7 899999999999863  3344666  77621    


Q ss_pred             hhhcC-CCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCC---------CCCC--CccHHHHHH-HHhCCCcc
Q 020104          158 IRKLD-SWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFI---------CPKF--AGSVRSSLA-LILGNREE  224 (331)
Q Consensus       158 ~~~~~-~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~---------~~~~--~~~~~~~~~-~~~~~~~~  224 (331)
                        .+. .|.++|+.+|..+|.+++.++.+++++++++||+.+||++.         .+..  ...+..+.. ...+.+..
T Consensus       172 --~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~  249 (377)
T 2q1s_A          172 --VSLHNNDSPYSMSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLP  249 (377)
T ss_dssp             --CCSSCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCSSCCSSGGGTSCSHHHHHHHHHHTTCCCC
T ss_pred             --ccccCCCCchHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCcccccccccCcccccccHHHHHHHHHHcCCCeE
Confidence              012 45678999999999999999888899999999999999986         2100  123333333 33444432


Q ss_pred             -cccCCC-ccceeHHHHHHH-HHHhhcCCCCCceEEEe-ccccCHHHHHHHHHhhCCC-CCCCCccCCccccCCc-Cccc
Q 020104          225 -YGFLLN-TSMVHVDDVARA-HIFLLEYPDAKGRYICS-SHTLTIQEMAEFLSAKYPE-YPIPTVDSLAEIEGYR-APGS  298 (331)
Q Consensus       225 -~~~~~~-~~~i~v~D~a~~-~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~i~~~~~~-~~~~~~~~~~~~~~~~-~~~~  298 (331)
                       ++.+.. ++|+|++|+|++ ++.+++++..+ +||++ ++.+|+.|+++.+.+.+|. ..+... + ....... ...+
T Consensus       250 ~~g~g~~~~~~i~v~Dva~a~i~~~~~~~~~g-~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~-p-~~~~~~~~~~~~  326 (377)
T 2q1s_A          250 LENGGVATRDFIFVEDVANGLIACAADGTPGG-VYNIASGKETSIADLATKINEITGNNTELDRL-P-KRPWDNSGKRFG  326 (377)
T ss_dssp             CSGGGCCEECCEEHHHHHHHHHHHHHHCCTTE-EEECCCCCCEEHHHHHHHHHHHHTCCSCCCCC-C-CCGGGCC-CCCC
T ss_pred             EeCCCCeEEeeEEHHHHHHHHHHHHHhcCCCC-eEEecCCCceeHHHHHHHHHHHhCCCCCceeC-C-CCcccccccccc
Confidence             334334 799999999999 99999877644 99975 5789999999999998873 222110 0 1112233 6789


Q ss_pred             CcHHH-HHcCCccccChhhhHHHHHHHHHHc
Q 020104          299 SSKKL-LDAGFRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       299 ~~~k~-~~lg~~~~~~~~e~i~~~~~~~~~~  328 (331)
                      |++|+ +.|||+|+++++|+|+++++||+++
T Consensus       327 d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~  357 (377)
T 2q1s_A          327 SPEKARRELGFSADVSIDDGLRKTIEWTKAN  357 (377)
T ss_dssp             CCHHHHHHHCCCCCCCHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCCCCHHHHHHHHHHHHHHh
Confidence            99999 8899999999999999999999764

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=100.00  E-value=5.7e-44  Score=311.09  Aligned_cols=294  Identities=24%  Similarity=0.265  Sum_probs=224.6

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--Cc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--GC   83 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~   83 (331)
                      |+|||||||||||++++++|+++|++|++++|...    ....   .+      ..+++++.+|+.|++++.++++  ++
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~----~~~~---~~------~~~~~~~~~Dl~~~~~~~~~~~~~~~   67 (311)
T 2p5y_A            1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLAT----GKRE---NV------PKGVPFFRVDLRDKEGVERAFREFRP   67 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSS----CCGG---GS------CTTCCEECCCTTCHHHHHHHHHHHCC
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCc----Cchh---hc------ccCeEEEECCCCCHHHHHHHHHhcCC
Confidence            47999999999999999999999999999988541    1111   11      1357788999999999999987  89


Q ss_pred             cEEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEeccc-ceeecCCCCCCcccCCCCCChhhhhh
Q 020104           84 TGVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSN-AAVFYNDKDVDMMDETFWSDVDYIRK  160 (331)
Q Consensus        84 d~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~-~~~~~~~~~~~~~~E~~~~~~~~~~~  160 (331)
                      |+|||+|+....  ...++. ..+++|+.++.+++++|++.+ +++|||+||. ++|+.. ....+++|+++        
T Consensus        68 d~vi~~a~~~~~~~~~~~~~-~~~~~N~~g~~~l~~a~~~~~-~~~iv~~SS~~~~~g~~-~~~~~~~E~~~--------  136 (311)
T 2p5y_A           68 THVSHQAAQASVKVSVEDPV-LDFEVNLLGGLNLLEACRQYG-VEKLVFASTGGAIYGEV-PEGERAEETWP--------  136 (311)
T ss_dssp             SEEEECCSCCCHHHHHHCHH-HHHHHHTHHHHHHHHHHHHTT-CSEEEEEEEHHHHHCCC-CTTCCBCTTSC--------
T ss_pred             CEEEECccccCchhhhhCHH-HHHHHHHHHHHHHHHHHHHhC-CCEEEEeCCChhhcCCC-CCCCCcCCCCC--------
Confidence            999999986542  123444 789999999999999999988 8999999998 777521 33457778764        


Q ss_pred             cCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCC-ccHHHHHH-HHhCCCcc-c-----ccCCC-c
Q 020104          161 LDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFA-GSVRSSLA-LILGNREE-Y-----GFLLN-T  231 (331)
Q Consensus       161 ~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~-~~~~~~~~-~~~~~~~~-~-----~~~~~-~  231 (331)
                       ..|.++|+.+|.++|.+++.++.+++++++++||+++|||+...... ..+..+.. ...+.+.. +     +.+.. +
T Consensus       137 -~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  215 (311)
T 2p5y_A          137 -PRPKSPYAASKAAFEHYLSVYGQSYGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVR  215 (311)
T ss_dssp             -CCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCSSSTTHHHHHHHHHHHHTCCEEEECSSSTTSCCCEE
T ss_pred             -CCCCChHHHHHHHHHHHHHHHHHHcCCCEEEEeeccccCcCCCCCCcCcHHHHHHHHHHcCCCcEEEecccCCCCCeEE
Confidence             24567899999999999999988889999999999999998654321 22333332 23444422 3     33334 7


Q ss_pred             cceeHHHHHHHHHHhhcCCCCCceEEEe-ccccCHHHHHHHHHhhCCCCCCCCccCCccccCCcCcccCcHHH-HHcCCc
Q 020104          232 SMVHVDDVARAHIFLLEYPDAKGRYICS-SHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSSKKL-LDAGFR  309 (331)
Q Consensus       232 ~~i~v~D~a~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~lg~~  309 (331)
                      +|+|++|+|++++.+++++  +++||++ ++.+|+.|+++.+.+.+|.. .+...............+|++|+ + |||+
T Consensus       216 ~~i~v~Dva~a~~~~~~~~--~~~~~i~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~d~~k~~~-lg~~  291 (311)
T 2p5y_A          216 DYVYVGDVAEAHALALFSL--EGIYNVGTGEGHTTREVLMAVAEAAGKA-PEVQPAPPRPGDLERSVLSPLKLMA-HGWR  291 (311)
T ss_dssp             CEEEHHHHHHHHHHHHHHC--CEEEEESCSCCEEHHHHHHHHHHHHTCC-CCEEEECCCTTCCSBCCBCCHHHHT-TTCC
T ss_pred             eeEEHHHHHHHHHHHHhCC--CCEEEeCCCCCccHHHHHHHHHHHhCCC-CCceeCCCCccchhhccCCHHHHHH-CCCC
Confidence            9999999999999999865  7799975 57899999999999988732 11100001112234678999999 6 9999


Q ss_pred             cccChhhhHHHHHHHHHHc
Q 020104          310 YNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       310 ~~~~~~e~i~~~~~~~~~~  328 (331)
                      |+++++|+++++++||+++
T Consensus       292 p~~~~~~~l~~~~~~~~~~  310 (311)
T 2p5y_A          292 PKVGFQEGIRLTVDHFRGA  310 (311)
T ss_dssp             CSSCHHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999764

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=100.00  E-value=4.1e-44  Score=313.27  Aligned_cols=292  Identities=20%  Similarity=0.151  Sum_probs=220.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      ++|+|||||||||||++|+++|+++|++|++++|+..... .....+..+..    ..+++++.+|+.          ++
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~----~~~~~~~~~Dl~----------~~   70 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPM-IPPEGTGKFLE----KPVLELEERDLS----------DV   70 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCS-SCCTTSSEEEC----SCGGGCCHHHHT----------TE
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccc-cchhhhhhhcc----CCCeeEEeCccc----------cC
Confidence            4689999999999999999999999999999999872100 01111111110    134555555554          78


Q ss_pred             cEEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhc
Q 020104           84 TGVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKL  161 (331)
Q Consensus        84 d~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~  161 (331)
                      |+|||+|+....  ...++. ..++ |+.++.+++++|++.+ +++|||+||.++|+  .....+++|+++         
T Consensus        71 d~vi~~a~~~~~~~~~~~~~-~~~~-n~~~~~~ll~a~~~~~-v~~~v~~SS~~v~~--~~~~~~~~E~~~---------  136 (321)
T 3vps_A           71 RLVYHLASHKSVPRSFKQPL-DYLD-NVDSGRHLLALCTSVG-VPKVVVGSTCEVYG--QADTLPTPEDSP---------  136 (321)
T ss_dssp             EEEEECCCCCCHHHHTTSTT-TTHH-HHHHHHHHHHHHHHHT-CCEEEEEEEGGGGC--SCSSSSBCTTSC---------
T ss_pred             CEEEECCccCChHHHHhCHH-HHHH-HHHHHHHHHHHHHHcC-CCeEEEecCHHHhC--CCCCCCCCCCCC---------
Confidence            999999987652  223444 6677 9999999999999999 99999999999985  445668888875         


Q ss_pred             CCCCchhHhhHHHHHHHHHHHHHHcCC-cEEEeccCceeCCCCCCCCCccHHHHHH-HHhCCC-cccccCCC-ccceeHH
Q 020104          162 DSWGKSYAISKTLTERAALEFAEEHGL-DLVTLIPSMVVGPFICPKFAGSVRSSLA-LILGNR-EEYGFLLN-TSMVHVD  237 (331)
Q Consensus       162 ~~~~~~Y~~~K~~~e~~~~~~~~~~~~-~~~ilRp~~v~G~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~-~~~i~v~  237 (331)
                      ..|.+.|+.+|..+|++++.++.++++ +++++||+.+|||+...  ...+..+.. ...+.. ..++.+.. ++|+|++
T Consensus       137 ~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~  214 (321)
T 3vps_A          137 LSPRSPYAASKVGLEMVAGAHQRASVAPEVGIVRFFNVYGPGERP--DALVPRLCANLLTRNELPVEGDGEQRRDFTYIT  214 (321)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHSSSSCEEEEEEECEEECTTCCT--TSHHHHHHHHHHHHSEEEEETTSCCEECEEEHH
T ss_pred             CCCCChhHHHHHHHHHHHHHHHHHcCCCceEEEEeccccCcCCCC--CChHHHHHHHHHcCCCeEEeCCCCceEceEEHH
Confidence            356789999999999999999988899 99999999999998664  223333333 334444 23344444 7999999


Q ss_pred             HHHHHHHHhhcCCCCCceEEEe-ccccCHHHHHHHHHhhCCCCCCCCccCCccccCCcCcccCcHHH-HHcCCcc-ccCh
Q 020104          238 DVARAHIFLLEYPDAKGRYICS-SHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSSKKL-LDAGFRY-NYGI  314 (331)
Q Consensus       238 D~a~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~lg~~~-~~~~  314 (331)
                      |+|++++.++.++..+ +||++ ++.+|+.|+++.+. .+|.. .+...............+|++|+ +.|||+| .+++
T Consensus       215 Dva~~~~~~~~~~~~g-~~~i~~~~~~s~~e~~~~i~-~~g~~-~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~  291 (321)
T 3vps_A          215 DVVDKLVALANRPLPS-VVNFGSGQSLSVNDVIRILQ-ATSPA-AEVARKQPRPNEITEFRADTALQTRQIGERSGGIGI  291 (321)
T ss_dssp             HHHHHHHHGGGSCCCS-EEEESCSCCEEHHHHHHHHH-TTCTT-CEEEEECCCTTCCSBCCBCCHHHHHHHCCCSCCCCH
T ss_pred             HHHHHHHHHHhcCCCC-eEEecCCCcccHHHHHHHHH-HhCCC-CccccCCCCCCCcceeeccHHHHHHHhCCCCCcCCH
Confidence            9999999999988776 99975 67899999999999 88732 11100111123345778999999 7799999 7799


Q ss_pred             hhhHHHHHHHHHHcC
Q 020104          315 DEMFDEAIQCCKEKG  329 (331)
Q Consensus       315 ~e~i~~~~~~~~~~~  329 (331)
                      +++|+++++||++++
T Consensus       292 ~~~l~~~~~~~~~~~  306 (321)
T 3vps_A          292 EEGIRLTLEWWQSRD  306 (321)
T ss_dssp             HHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHhCC
Confidence            999999999999875

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=100.00  E-value=8.9e-44  Score=314.66  Aligned_cols=307  Identities=19%  Similarity=0.224  Sum_probs=228.0

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCccc--CCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEH--RNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      +|+|||||||||||++++++|+++|++|++++|+....+.  ...+.+..+....  ..+++++.+|+.|.+++.++++ 
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~D~~~~~~~~~~~~~   79 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELT--GRSVEFEEMDILDQGALQRLFKK   79 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHH--TCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhcc--CCceEEEECCCCCHHHHHHHHHh
Confidence            5799999999999999999999999999999987521000  0111222221100  1468899999999999999998 


Q ss_pred             -CccEEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhh
Q 020104           82 -GCTGVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYI  158 (331)
Q Consensus        82 -~~d~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~  158 (331)
                       ++|+|||+|+....  ...++. ..+++|+.++.+++++|++.+ +++|||+||.++|+  .....+++|+++.     
T Consensus        80 ~~~d~vih~A~~~~~~~~~~~~~-~~~~~n~~~~~~l~~~~~~~~-~~~iv~~SS~~~~g--~~~~~~~~E~~~~-----  150 (348)
T 1ek6_A           80 YSFMAVIHFAGLKAVGESVQKPL-DYYRVNLTGTIQLLEIMKAHG-VKNLVFSSSATVYG--NPQYLPLDEAHPT-----  150 (348)
T ss_dssp             CCEEEEEECCSCCCHHHHHHCHH-HHHHHHHHHHHHHHHHHHHTT-CCEEEEEEEGGGGC--SCSSSSBCTTSCC-----
T ss_pred             cCCCEEEECCCCcCccchhhchH-HHHHHHHHHHHHHHHHHHHhC-CCEEEEECcHHHhC--CCCCCCcCCCCCC-----
Confidence             89999999997542  122444 789999999999999999988 89999999999985  3445678888752     


Q ss_pred             hhcCCC-CchhHhhHHHHHHHHHHHHHH-cCCcEEEeccCceeCCCCCCC--------CCccHHHHHHHHhCCCc---cc
Q 020104          159 RKLDSW-GKSYAISKTLTERAALEFAEE-HGLDLVTLIPSMVVGPFICPK--------FAGSVRSSLALILGNRE---EY  225 (331)
Q Consensus       159 ~~~~~~-~~~Y~~~K~~~e~~~~~~~~~-~~~~~~ilRp~~v~G~~~~~~--------~~~~~~~~~~~~~~~~~---~~  225 (331)
                          .| .++|+.+|..+|.+++.++.+ .+++++++||+++|||+..+.        ....+..+.....+...   .+
T Consensus       151 ----~p~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (348)
T 1ek6_A          151 ----GGCTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVF  226 (348)
T ss_dssp             ----CCCSSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEE
T ss_pred             ----CCCCCchHHHHHHHHHHHHHHHhcCCCcceEEEeeccccCCCcccccCcCcccchhhHHHHHHHHHHhcCCCeEEe
Confidence                34 678999999999999999876 239999999999999953211        12233344444443221   12


Q ss_pred             c------cCCC-ccceeHHHHHHHHHHhhcCC--CCC-ceEEEe-ccccCHHHHHHHHHhhCCCCCCCCccCCcc-ccCC
Q 020104          226 G------FLLN-TSMVHVDDVARAHIFLLEYP--DAK-GRYICS-SHTLTIQEMAEFLSAKYPEYPIPTVDSLAE-IEGY  293 (331)
Q Consensus       226 ~------~~~~-~~~i~v~D~a~~~~~~~~~~--~~~-~~~~~~-~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~-~~~~  293 (331)
                      +      .+.. ++|+|++|+|++++.+++++  ..+ ++||++ ++.+|+.|+++.+.+.+|. +++.. ..+. ....
T Consensus       227 g~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~g~~~~ni~~~~~~s~~e~~~~i~~~~g~-~~~~~-~~~~~~~~~  304 (348)
T 1ek6_A          227 GNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGK-KIPYK-VVARREGDV  304 (348)
T ss_dssp             CSCSSSSSSSCEECEEEHHHHHHHHHHHHHHHTTTCCEEEEEECCSCCEEHHHHHHHHHHHHCS-CCCEE-EECCCTTCC
T ss_pred             CCcccCCCCceEEeeEEHHHHHHHHHHHHhcccccCCceEEEeCCCCCccHHHHHHHHHHHhCC-CCcee-eCCCCCccc
Confidence            2      2233 79999999999999999764  344 689975 5789999999999998873 22210 1111 1223


Q ss_pred             cCcccCcHHH-HHcCCccccChhhhHHHHHHHHHHc
Q 020104          294 RAPGSSSKKL-LDAGFRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       294 ~~~~~~~~k~-~~lg~~~~~~~~e~i~~~~~~~~~~  328 (331)
                      ....+|++|+ +.|||+|+++++++|+++++||+++
T Consensus       305 ~~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~w~~~~  340 (348)
T 1ek6_A          305 AACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQN  340 (348)
T ss_dssp             SEECBCCHHHHHTTCCCCCCCHHHHHHHHHHHHHHC
T ss_pred             hhhccCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence            4567899999 8899999999999999999999876

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=100.00  E-value=5.9e-44  Score=307.31  Aligned_cols=271  Identities=17%  Similarity=0.145  Sum_probs=214.8

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC-c
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG-C   83 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~-~   83 (331)
                      ||+||||| +||||++|+++|+++|++|++++|+..     .            ...+++++.+|+.|.+++.+++++ +
T Consensus         3 ~~~ilVtG-aG~iG~~l~~~L~~~g~~V~~~~r~~~-----~------------~~~~~~~~~~Dl~d~~~~~~~~~~~~   64 (286)
T 3gpi_A            3 LSKILIAG-CGDLGLELARRLTAQGHEVTGLRRSAQ-----P------------MPAGVQTLIADVTRPDTLASIVHLRP   64 (286)
T ss_dssp             CCCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECTTS-----C------------CCTTCCEEECCTTCGGGCTTGGGGCC
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCcc-----c------------cccCCceEEccCCChHHHHHhhcCCC
Confidence            46899999 599999999999999999999999872     1            115788999999999999999987 9


Q ss_pred             cEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCC
Q 020104           84 TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDS  163 (331)
Q Consensus        84 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~  163 (331)
                      |+|||+|+...   .++. ..+++|+.++.+++++|++.+ +++|||+||.++|+  .....+++|+++         ..
T Consensus        65 d~vih~a~~~~---~~~~-~~~~~n~~~~~~ll~a~~~~~-~~~~v~~SS~~vyg--~~~~~~~~E~~~---------~~  128 (286)
T 3gpi_A           65 EILVYCVAASE---YSDE-HYRLSYVEGLRNTLSALEGAP-LQHVFFVSSTGVYG--QEVEEWLDEDTP---------PI  128 (286)
T ss_dssp             SEEEECHHHHH---HC------CCSHHHHHHHHHHTTTSC-CCEEEEEEEGGGCC--CCCSSEECTTSC---------CC
T ss_pred             CEEEEeCCCCC---CCHH-HHHHHHHHHHHHHHHHHhhCC-CCEEEEEcccEEEc--CCCCCCCCCCCC---------CC
Confidence            99999998643   2333 788899999999999999988 89999999999985  445667888885         35


Q ss_pred             CCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCC-ccceeHHHHHHH
Q 020104          164 WGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLN-TSMVHVDDVARA  242 (331)
Q Consensus       164 ~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~D~a~~  242 (331)
                      |.+.|+.+|..+|++ +.+     ++++++||+.+||++...        +...+.. ....+.+.. ++|+|++|+|++
T Consensus       129 p~~~Y~~sK~~~E~~-~~~-----~~~~ilR~~~v~G~~~~~--------~~~~~~~-~~~~~~~~~~~~~i~v~Dva~~  193 (286)
T 3gpi_A          129 AKDFSGKRMLEAEAL-LAA-----YSSTILRFSGIYGPGRLR--------MIRQAQT-PEQWPARNAWTNRIHRDDGAAF  193 (286)
T ss_dssp             CCSHHHHHHHHHHHH-GGG-----SSEEEEEECEEEBTTBCH--------HHHHTTC-GGGSCSSBCEECEEEHHHHHHH
T ss_pred             CCChhhHHHHHHHHH-Hhc-----CCeEEEecccccCCCchh--------HHHHHHh-cccCCCcCceeEEEEHHHHHHH
Confidence            678999999999999 653     999999999999997541        2222222 222333333 699999999999


Q ss_pred             HHHhhcC---CCCCceEEEe-ccccCHHHHHHHHHhhCCCCCCCCccCCccccCCcCcccCcHHHHHcCCcccc-Chhhh
Q 020104          243 HIFLLEY---PDAKGRYICS-SHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSSKKLLDAGFRYNY-GIDEM  317 (331)
Q Consensus       243 ~~~~~~~---~~~~~~~~~~-~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lg~~~~~-~~~e~  317 (331)
                      ++.++++   ...+++||++ ++.+|+.|+++.+.+.+|......   ... .......+|++|++.|||+|++ +++|+
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~---~~~-~~~~~~~~d~~k~~~lG~~p~~~~l~e~  269 (286)
T 3gpi_A          194 IAYLIQQRSHAVPERLYIVTDNQPLPVHDLLRWLADRQGIAYPAG---ATP-PVQGNKKLSNARLLASGYQLIYPDYVSG  269 (286)
T ss_dssp             HHHHHHHHTTSCCCSEEEECCSCCEEHHHHHHHHHHHTTCCCCCS---CCC-CBCSSCEECCHHHHHTTCCCSSCSHHHH
T ss_pred             HHHHHhhhccCCCCceEEEeCCCCCCHHHHHHHHHHHcCCCCCCC---CCc-ccCCCeEeeHHHHHHcCCCCcCCcHHHH
Confidence            9999998   4567899976 578999999999999998322111   111 3345678999999999999999 69999


Q ss_pred             HHHHHHHHHHc
Q 020104          318 FDEAIQCCKEK  328 (331)
Q Consensus       318 i~~~~~~~~~~  328 (331)
                      |+++++|+..+
T Consensus       270 l~~~~~~~~~~  280 (286)
T 3gpi_A          270 YGALLAAMREG  280 (286)
T ss_dssp             HHHHHHHHTC-
T ss_pred             HHHHHHHHhcc
Confidence            99999998543

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=100.00  E-value=3.5e-43  Score=306.84  Aligned_cols=291  Identities=18%  Similarity=0.147  Sum_probs=222.5

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      .+||+|||||||||||++|+++|+++|+      +..     .   .          ...++++.+|+.|.+++.+++++
T Consensus         4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~------~~~-----~---~----------~~~~~~~~~D~~d~~~~~~~~~~   59 (319)
T 4b8w_A            4 FQSMRILVTGGSGLVGKAIQKVVADGAG------LPG-----E---D----------WVFVSSKDADLTDTAQTRALFEK   59 (319)
T ss_dssp             CCCCEEEEETCSSHHHHHHHHHHHTTTC------CTT-----C---E----------EEECCTTTCCTTSHHHHHHHHHH
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhcCC------ccc-----c---c----------ccccCceecccCCHHHHHHHHhh
Confidence            3568999999999999999999999998      222     0   0          02344567999999999999986


Q ss_pred             --ccEEEEecccCC---CCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhh
Q 020104           83 --CTGVLHVATPVD---FEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDY  157 (331)
Q Consensus        83 --~d~Vih~a~~~~---~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~  157 (331)
                        +|+|||+|+...   ....++. ..+++|+.++.+++++|++.+ +++|||+||.++|+  .....+++|+++..   
T Consensus        60 ~~~d~Vih~A~~~~~~~~~~~~~~-~~~~~nv~gt~~ll~a~~~~~-~~~~v~~SS~~vyg--~~~~~~~~E~~~~~---  132 (319)
T 4b8w_A           60 VQPTHVIHLAAMVGGLFRNIKYNL-DFWRKNVHMNDNVLHSAFEVG-ARKVVSCLSTCIFP--DKTTYPIDETMIHN---  132 (319)
T ss_dssp             SCCSEEEECCCCCCCHHHHTTCHH-HHHHHHHHHHHHHHHHHHHTT-CSEEEEECCGGGSC--SSCCSSBCGGGGGB---
T ss_pred             cCCCEEEECceecccccccccCHH-HHHHHHHHHHHHHHHHHHHcC-CCeEEEEcchhhcC--CCCCCCcccccccc---
Confidence              999999999754   2234555 889999999999999999998 89999999999985  44566788886311   


Q ss_pred             hhhcCCCCc-hhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCC--CccHHHHHH-----HHhCCCcc-cccC
Q 020104          158 IRKLDSWGK-SYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKF--AGSVRSSLA-----LILGNREE-YGFL  228 (331)
Q Consensus       158 ~~~~~~~~~-~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~--~~~~~~~~~-----~~~~~~~~-~~~~  228 (331)
                        .++.|.+ +|+.+|..+|++++.++++++++++++||+++|||+.....  ...+..++.     ...+.+.. ++.+
T Consensus       133 --~~~~p~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  210 (319)
T 4b8w_A          133 --GPPHNSNFGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVWGTG  210 (319)
T ss_dssp             --SCCCSSSHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCCCTTTSCHHHHHHHHHHHHHHHTCCEEEESCS
T ss_pred             --CCCCCCcchHHHHHHHHHHHHHHHHHhhCCCEEEEeeccccCCCCCCCCccccccHHHHHHHHHHhccCCceEEeCCC
Confidence              0123344 69999999999999999888999999999999999875422  122333332     23455433 3444


Q ss_pred             CC-ccceeHHHHHHHHHHhhcCCCC--CceEEEe-ccccCHHHHHHHHHhhCCCC-CCCCccCCccccCCcCcccCcHHH
Q 020104          229 LN-TSMVHVDDVARAHIFLLEYPDA--KGRYICS-SHTLTIQEMAEFLSAKYPEY-PIPTVDSLAEIEGYRAPGSSSKKL  303 (331)
Q Consensus       229 ~~-~~~i~v~D~a~~~~~~~~~~~~--~~~~~~~-~~~~s~~e~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~k~  303 (331)
                      .. ++|+|++|+|++++.++.++..  +++||++ ++.+|+.|+++.+.+.+|.. .+..  ............+|++|+
T Consensus       211 ~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~--~~~~~~~~~~~~~d~~k~  288 (319)
T 4b8w_A          211 NPRRQFIYSLDLAQLFIWVLREYNEVEPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVTF--DTTKSDGQFKKTASNSKL  288 (319)
T ss_dssp             CCEECEEEHHHHHHHHHHHHHHCCCSSCEEECCCGGGCEEHHHHHHHHHHHTTCCSCEEE--ETTSCCCCSCCCBCCHHH
T ss_pred             CeeEEEEeHHHHHHHHHHHHhccccCCceEEEecCCCceeHHHHHHHHHHHhCCCCcEEe--CCCCCcCcccccCCHHHH
Confidence            44 7999999999999999987433  4588864 68899999999999999832 1111  111112334567999999


Q ss_pred             -HHcCCccccChhhhHHHHHHHHHHc
Q 020104          304 -LDAGFRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       304 -~~lg~~~~~~~~e~i~~~~~~~~~~  328 (331)
                       +.|||.|.++++|+|+++++||+++
T Consensus       289 ~~~lg~~p~~~~~~~l~~~~~~~~~~  314 (319)
T 4b8w_A          289 RTYLPDFRFTPFKQAVKETCAWFTDN  314 (319)
T ss_dssp             HHHCTTCCCCCHHHHHHHHHHHHHHS
T ss_pred             HHhcCCCCCCCHHHHHHHHHHHHHHH
Confidence             7799999999999999999999876

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=100.00  E-value=1.6e-43  Score=312.88  Aligned_cols=302  Identities=16%  Similarity=0.178  Sum_probs=223.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG--   82 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--   82 (331)
                      ||+|||||||||||++++++|++.|++|++++|....   ........+..    ..+++++.+|+.|.+++.+++++  
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~---~~~~~~~~l~~----~~~~~~~~~Dl~d~~~~~~~~~~~~   73 (347)
T 1orr_A            1 MAKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRK---GATDNLHWLSS----LGNFEFVHGDIRNKNDVTRLITKYM   73 (347)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCST---THHHHHHHHHT----TCCCEEEECCTTCHHHHHHHHHHHC
T ss_pred             CcEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCcc---Cchhhhhhhcc----CCceEEEEcCCCCHHHHHHHHhccC
Confidence            3689999999999999999999999999999986410   11111222221    13588999999999999999987  


Q ss_pred             ccEEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcCCcc-EEEEecccceeecCCCCCCc-------------
Q 020104           83 CTGVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSGTVK-RVVYTSSNAAVFYNDKDVDM-------------  146 (331)
Q Consensus        83 ~d~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~v~~SS~~~~~~~~~~~~~-------------  146 (331)
                      +|+|||+|+....  ...++. ..+++|+.++.+++++|++.+ ++ +|||+||.++|+.  ....+             
T Consensus        74 ~d~vih~A~~~~~~~~~~~~~-~~~~~nv~~~~~l~~a~~~~~-~~~~iv~~SS~~v~g~--~~~~~~~e~~~~~~~~~~  149 (347)
T 1orr_A           74 PDSCFHLAGQVAMTTSIDNPC-MDFEINVGGTLNLLEAVRQYN-SNCNIIYSSTNKVYGD--LEQYKYNETETRYTCVDK  149 (347)
T ss_dssp             CSEEEECCCCCCHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHC-TTCEEEEEEEGGGGTT--CTTSCEEECSSCEEETTC
T ss_pred             CCEEEECCcccChhhhhhCHH-HHHHHHHHHHHHHHHHHHHhC-CCceEEEeccHHHhCC--CCcCCccccccccccccc
Confidence            9999999997542  112444 789999999999999999988 65 9999999999863  22223             


Q ss_pred             ---ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCC-ccHHHHH-HHHhCC
Q 020104          147 ---MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFA-GSVRSSL-ALILGN  221 (331)
Q Consensus       147 ---~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~-~~~~~~~-~~~~~~  221 (331)
                         ++|+++         ..|.+.|+.+|..+|.+++.++.+++++++++||+.+||++...... ..+..+. ....+.
T Consensus       150 ~~~~~e~~~---------~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~  220 (347)
T 1orr_A          150 PNGYDESTQ---------LDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIK  220 (347)
T ss_dssp             TTCBCTTSC---------CCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHH
T ss_pred             ccCccccCC---------CCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcCCCCCCcCcHHHHHHHHHHhCc
Confidence               333332         34678999999999999999988889999999999999997643211 1232222 222332


Q ss_pred             -----C-cccccCCC-ccceeHHHHHHHHHHhhcCC--CCCceEEEecc---ccCHHHHHHHHHhhCCCC-CCCCccCCc
Q 020104          222 -----R-EEYGFLLN-TSMVHVDDVARAHIFLLEYP--DAKGRYICSSH---TLTIQEMAEFLSAKYPEY-PIPTVDSLA  288 (331)
Q Consensus       222 -----~-~~~~~~~~-~~~i~v~D~a~~~~~~~~~~--~~~~~~~~~~~---~~s~~e~~~~i~~~~~~~-~~~~~~~~~  288 (331)
                           + ..++.+.. ++|+|++|+|++++.+++++  ..+++||+++.   ++|+.|+++.+.+.+|.. .+..  ...
T Consensus       221 ~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~~~~~g~~~~v~~~~~~~~s~~e~~~~i~~~~g~~~~~~~--~~~  298 (347)
T 1orr_A          221 NGINKPFTISGNGKQVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTN--LPV  298 (347)
T ss_dssp             TTCCCCEEEESSSCCEEECEEHHHHHHHHHHHHHTHHHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEE--ECC
T ss_pred             ccCCCCeEEecCCcceEeeEEHHHHHHHHHHHHhccccCCCCEEEeCCCCCCCccHHHHHHHHHHHhCCCCCcee--CCC
Confidence                 2 22344444 79999999999999999852  24568998653   499999999999988732 1111  001


Q ss_pred             cccCCcCcccCcHHH-HHcCCccccChhhhHHHHHHHHHHc
Q 020104          289 EIEGYRAPGSSSKKL-LDAGFRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       289 ~~~~~~~~~~~~~k~-~~lg~~~~~~~~e~i~~~~~~~~~~  328 (331)
                      .........+|++|+ +.|||+|+++++|+|+++++|++++
T Consensus       299 ~~~~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~  339 (347)
T 1orr_A          299 RESDQRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWTSSI  339 (347)
T ss_dssp             CSSCCSEECBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHC
T ss_pred             CCCCcceeecCHHHHHHHHCCCccCCHHHHHHHHHHHHHHH
Confidence            112234567899999 8899999889999999999999875

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=100.00  E-value=1.2e-42  Score=307.00  Aligned_cols=305  Identities=18%  Similarity=0.232  Sum_probs=226.8

Q ss_pred             ceEEEecCcchhHHHHHHHHHHC-CCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCC-ccHHHHhcCc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDH-GYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHP-DGFDAAIAGC   83 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~   83 (331)
                      |+|||||||||||++++++|+++ |++|++++|+.     .....   +..    ..+++++.+|+.|. +.+.++++++
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~-----~~~~~---~~~----~~~~~~~~~D~~~~~~~~~~~~~~~   68 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGS-----DAISR---FLN----HPHFHFVEGDISIHSEWIEYHVKKC   68 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCC-----GGGGG---GTT----CTTEEEEECCTTTCSHHHHHHHHHC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCc-----chHHH---hhc----CCCeEEEeccccCcHHHHHhhccCC
Confidence            48999999999999999999998 89999999987     22211   111    25789999999985 4688888899


Q ss_pred             cEEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhc
Q 020104           84 TGVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKL  161 (331)
Q Consensus        84 d~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~  161 (331)
                      |+|||+|+....  ...++. ..+++|+.++.+++++|++.+  ++|||+||.++|+  .....+++|+++...  ..+.
T Consensus        69 d~vih~A~~~~~~~~~~~~~-~~~~~n~~~~~~l~~~~~~~~--~~~v~~SS~~v~g--~~~~~~~~e~~~~~~--~~~~  141 (345)
T 2bll_A           69 DVVLPLVAIATPIEYTRNPL-RVFELDFEENLRIIRYCVKYR--KRIIFPSTSEVYG--MCSDKYFDEDHSNLI--VGPV  141 (345)
T ss_dssp             SEEEECBCCCCHHHHHHSHH-HHHHHHTHHHHHHHHHHHHTT--CEEEEECCGGGGB--TCCCSSBCTTTCCCB--CCCT
T ss_pred             CEEEEcccccCccchhcCHH-HHHHHHHHHHHHHHHHHHHhC--CeEEEEecHHHcC--CCCCCCcCCcccccc--cCcc
Confidence            999999986542  112444 788999999999999999987  7999999999986  333456788775311  0111


Q ss_pred             CCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCC------CccHHHHH-HHHhCCCcc-cccCCC-cc
Q 020104          162 DSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKF------AGSVRSSL-ALILGNREE-YGFLLN-TS  232 (331)
Q Consensus       162 ~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~------~~~~~~~~-~~~~~~~~~-~~~~~~-~~  232 (331)
                      ..|.+.|+.+|..+|.+++.++.+++++++++||+.+|||+.....      ...+..++ ....+.+.. ++.+.. ++
T Consensus       142 ~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  221 (345)
T 2bll_A          142 NKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRC  221 (345)
T ss_dssp             TCGGGHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEE
T ss_pred             cCcccccHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccCCCcccccccccccccHHHHHHHHHHcCCCcEEECCCCEEEE
Confidence            2456789999999999999998888999999999999999864311      11233333 334455432 333333 79


Q ss_pred             ceeHHHHHHHHHHhhcCCC---CCceEEEec-c-ccCHHHHHHHHHhhCCCC----CCCCccCC---------c-cccCC
Q 020104          233 MVHVDDVARAHIFLLEYPD---AKGRYICSS-H-TLTIQEMAEFLSAKYPEY----PIPTVDSL---------A-EIEGY  293 (331)
Q Consensus       233 ~i~v~D~a~~~~~~~~~~~---~~~~~~~~~-~-~~s~~e~~~~i~~~~~~~----~~~~~~~~---------~-~~~~~  293 (331)
                      |+|++|+|++++.+++++.   .+++||+++ + .+|+.|+++.+.+.+|..    .++.....         . .....
T Consensus       222 ~i~v~Dva~a~~~~~~~~~~~~~g~~~~i~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (345)
T 2bll_A          222 FTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDV  301 (345)
T ss_dssp             CEEHHHHHHHHHHHHHCGGGTTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC------------C
T ss_pred             EEEHHHHHHHHHHHHhhccccCCCceEEeCCCCCCCCHHHHHHHHHHHhCCCcccccCccccccccccchhhccccccch
Confidence            9999999999999998763   466899865 4 799999999999977622    12211000         0 00123


Q ss_pred             cCcccCcHHH-HHcCCccccChhhhHHHHHHHHHHcC
Q 020104          294 RAPGSSSKKL-LDAGFRYNYGIDEMFDEAIQCCKEKG  329 (331)
Q Consensus       294 ~~~~~~~~k~-~~lg~~~~~~~~e~i~~~~~~~~~~~  329 (331)
                      ....+|++|+ +.|||+|+++++++|+++++||+++.
T Consensus       302 ~~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~~~~~~~  338 (345)
T 2bll_A          302 EHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTV  338 (345)
T ss_dssp             CCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHS
T ss_pred             hhhcccHHHHHHhcCCCccccHHHHHHHHHHHHHHcC
Confidence            4567899999 78999999999999999999998764

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=100.00  E-value=1.1e-42  Score=309.09  Aligned_cols=303  Identities=17%  Similarity=0.203  Sum_probs=226.9

Q ss_pred             ceEEEecCcchhHHHHHHHHHHC-CCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--C
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDH-GYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--G   82 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~   82 (331)
                      |+|||||||||||++++++|++. |++|++++|+...   .....+   .++.. ..+++++.+|+.|.+++.++++  +
T Consensus         1 MkvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~---~~~~~~---~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~   73 (361)
T 1kew_A            1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYA---GNLESL---SDISE-SNRYNFEHADICDSAEITRIFEQYQ   73 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTT---CCGGGG---TTTTT-CTTEEEEECCTTCHHHHHHHHHHHC
T ss_pred             CEEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCC---Cchhhh---hhhhc-CCCeEEEECCCCCHHHHHHHHhhcC
Confidence            37999999999999999999998 7999999987510   111122   12111 2578999999999999999997  8


Q ss_pred             ccEEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhc--CCcc-------EEEEecccceeecCCCCCC------
Q 020104           83 CTGVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKS--GTVK-------RVVYTSSNAAVFYNDKDVD------  145 (331)
Q Consensus        83 ~d~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~-------~~v~~SS~~~~~~~~~~~~------  145 (331)
                      +|+|||+|+....  ...++. ..+++|+.++.+++++|.+.  + ++       +|||+||.++|+.......      
T Consensus        74 ~d~vih~A~~~~~~~~~~~~~-~~~~~Nv~g~~~l~~a~~~~~~~-v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~  151 (361)
T 1kew_A           74 PDAVMHLAAESHVDRSITGPA-AFIETNIVGTYALLEVARKYWSA-LGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVT  151 (361)
T ss_dssp             CSEEEECCSCCCHHHHHHCTH-HHHHHHTHHHHHHHHHHHHHHHT-SCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSC
T ss_pred             CCEEEECCCCcChhhhhhCHH-HHHHHHHHHHHHHHHHHHHhccC-cccccccCceEEEeCCHHHhCCCccccccccccc
Confidence            9999999997541  122444 78999999999999999988  7 76       9999999999863221111      


Q ss_pred             --cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHH-HHHhCCC
Q 020104          146 --MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSL-ALILGNR  222 (331)
Q Consensus       146 --~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~~~~~  222 (331)
                        +++|+++         ..|.+.|+.+|.++|.+++.++.+++++++++||+.+||++..+.  ..+..+. ....+..
T Consensus       152 ~~~~~E~~~---------~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~--~~~~~~~~~~~~~~~  220 (361)
T 1kew_A          152 LPLFTETTA---------YAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPE--KLIPLVILNALEGKP  220 (361)
T ss_dssp             CCCBCTTSC---------CCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTT--SHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCC---------CCCCCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCCCCcc--cHHHHHHHHHHcCCC
Confidence              6677764         345779999999999999999888899999999999999986431  2233333 2334444


Q ss_pred             c-ccccCCC-ccceeHHHHHHHHHHhhcCCCCCceEEEec-cccCHHHHHHHHHhhCCC-CCC--CCccCC---ccc-cC
Q 020104          223 E-EYGFLLN-TSMVHVDDVARAHIFLLEYPDAKGRYICSS-HTLTIQEMAEFLSAKYPE-YPI--PTVDSL---AEI-EG  292 (331)
Q Consensus       223 ~-~~~~~~~-~~~i~v~D~a~~~~~~~~~~~~~~~~~~~~-~~~s~~e~~~~i~~~~~~-~~~--~~~~~~---~~~-~~  292 (331)
                      . .++.+.. ++++|++|+|++++.+++++..+++||+++ +.+|+.|+++.+.+.+|. .+.  |.....   ... ..
T Consensus       221 ~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~p~~~~~~~~~~~~~~  300 (361)
T 1kew_A          221 LPIYGKGDQIRDWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGH  300 (361)
T ss_dssp             EEEETTSCCEEEEEEHHHHHHHHHHHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEECCCTTC
T ss_pred             ceEcCCCceeEeeEEHHHHHHHHHHHHhCCCCCCEEEecCCCeeeHHHHHHHHHHHhCCcCccccccccceeecCCCCcc
Confidence            2 2344444 799999999999999998776677999765 679999999999987662 111  110000   001 12


Q ss_pred             CcCcccCcHHH-HHcCCccccChhhhHHHHHHHHHHc
Q 020104          293 YRAPGSSSKKL-LDAGFRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       293 ~~~~~~~~~k~-~~lg~~~~~~~~e~i~~~~~~~~~~  328 (331)
                      .....+|++|+ +.|||+|+++++|+|+++++||+++
T Consensus       301 ~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~  337 (361)
T 1kew_A          301 DRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLAN  337 (361)
T ss_dssp             CCBCCBCCHHHHHHHCCCCSCCHHHHHHHHHHHHHHC
T ss_pred             cceeecCHHHHHHHhCCCCccCHHHHHHHHHHHHHhc
Confidence            23467899999 7799999999999999999999764

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=100.00  E-value=4.4e-42  Score=303.18  Aligned_cols=300  Identities=19%  Similarity=0.245  Sum_probs=224.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+|+|||||||||||++|+++|++.|++|++++|+..    .....+..+.    ...+++++.+|+.+..     +.++
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~----~~~~~~~~~~----~~~~~~~~~~D~~~~~-----~~~~   92 (343)
T 2b69_A           26 DRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFT----GRKRNVEHWI----GHENFELINHDVVEPL-----YIEV   92 (343)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS----CCGGGTGGGT----TCTTEEEEECCTTSCC-----CCCC
T ss_pred             CCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCc----cchhhhhhhc----cCCceEEEeCccCChh-----hcCC
Confidence            4578999999999999999999999999999999752    1111111111    1257899999998863     5689


Q ss_pred             cEEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhc
Q 020104           84 TGVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKL  161 (331)
Q Consensus        84 d~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~  161 (331)
                      |+|||+|+....  ...++. ..+++|+.++.+++++|++.+ + +|||+||.++|+  .....+++|+++....    +
T Consensus        93 d~vih~A~~~~~~~~~~~~~-~~~~~n~~~~~~l~~a~~~~~-~-~~v~~SS~~v~g--~~~~~~~~E~~~~~~~----~  163 (343)
T 2b69_A           93 DQIYHLASPASPPNYMYNPI-KTLKTNTIGTLNMLGLAKRVG-A-RLLLASTSEVYG--DPEVHPQSEDYWGHVN----P  163 (343)
T ss_dssp             SEEEECCSCCSHHHHTTCHH-HHHHHHHHHHHHHHHHHHHHT-C-EEEEEEEGGGGB--SCSSSSBCTTCCCBCC----S
T ss_pred             CEEEECccccCchhhhhCHH-HHHHHHHHHHHHHHHHHHHhC-C-cEEEECcHHHhC--CCCCCCCcccccccCC----C
Confidence            999999997542  123454 789999999999999999988 5 999999999985  3345677777542111    1


Q ss_pred             CCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHH-HHHhCCCc-ccccCCC-ccceeHHH
Q 020104          162 DSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSL-ALILGNRE-EYGFLLN-TSMVHVDD  238 (331)
Q Consensus       162 ~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~-~~~i~v~D  238 (331)
                      ..|.+.|+.+|..+|.+++.++.+++++++++||+.+|||+........+..++ ....+... .++.+.. ++|+|++|
T Consensus       164 ~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D  243 (343)
T 2b69_A          164 IGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSD  243 (343)
T ss_dssp             SSTTHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHH
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEEcceeCcCCCCCcccHHHHHHHHHHcCCCceEcCCCCeEEeeEeHHH
Confidence            345678999999999999999888899999999999999986543222333333 33445543 2444444 79999999


Q ss_pred             HHHHHHHhhcCCCCCceEEEe-ccccCHHHHHHHHHhhCCCC-CCCCccCCccccCCcCcccCcHHH-HHcCCccccChh
Q 020104          239 VARAHIFLLEYPDAKGRYICS-SHTLTIQEMAEFLSAKYPEY-PIPTVDSLAEIEGYRAPGSSSKKL-LDAGFRYNYGID  315 (331)
Q Consensus       239 ~a~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~k~-~~lg~~~~~~~~  315 (331)
                      +|++++.+++.+ .+++||++ ++.+|+.|+++.+.+.+|.. .+..  ............+|++|+ +.|||+|+++++
T Consensus       244 va~a~~~~~~~~-~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~--~p~~~~~~~~~~~d~~k~~~~lG~~p~~~l~  320 (343)
T 2b69_A          244 LVNGLVALMNSN-VSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQF--LSEAQDDPQKRKPDIKKAKLMLGWEPVVPLE  320 (343)
T ss_dssp             HHHHHHHHHTSS-CCSCEEESCCCEEEHHHHHHHHHHHHTCCCCEEE--ECCCTTCCCCCCBCCHHHHHHHCCCCCSCHH
T ss_pred             HHHHHHHHHhcC-CCCeEEecCCCCCcHHHHHHHHHHHhCCCCCcee--CCCCCCCCceecCCHHHHHHHcCCCCCCCHH
Confidence            999999999865 36789875 57899999999999988732 1111  000012234567899999 789999988999


Q ss_pred             hhHHHHHHHHHHc
Q 020104          316 EMFDEAIQCCKEK  328 (331)
Q Consensus       316 e~i~~~~~~~~~~  328 (331)
                      |+|+++++||+++
T Consensus       321 e~l~~~~~~~~~~  333 (343)
T 2b69_A          321 EGLNKAIHYFRKE  333 (343)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999764

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=100.00  E-value=4e-43  Score=306.55  Aligned_cols=292  Identities=20%  Similarity=0.259  Sum_probs=224.0

Q ss_pred             eEEEecCcchhHHHHHHHHHHC--CCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--C
Q 020104            7 RVCVTGGTGFIASWLIMRLLDH--GYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--G   82 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~   82 (331)
                      +|||||||||||++++++|++.  |++|++++|+..     ..             .+++++.+|+.|++++.++++  +
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~-----~~-------------~~~~~~~~D~~d~~~~~~~~~~~~   62 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQR-----DT-------------GGIKFITLDVSNRDEIDRAVEKYS   62 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCC-----CC-------------TTCCEEECCTTCHHHHHHHHHHTT
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCc-----cc-------------cCceEEEecCCCHHHHHHHHhhcC
Confidence            5999999999999999999998  899999998762     11             135688999999999999997  8


Q ss_pred             ccEEEEecccCCC-CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhc
Q 020104           83 CTGVLHVATPVDF-EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKL  161 (331)
Q Consensus        83 ~d~Vih~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~  161 (331)
                      +|+|||+|+.... ...++. ..+++|+.++.+++++|++.+ +++|||+||.++|+.. ....+.+|+++         
T Consensus        63 ~d~vih~a~~~~~~~~~~~~-~~~~~n~~~~~~l~~a~~~~~-~~~~v~~SS~~~~~~~-~~~~~~~e~~~---------  130 (317)
T 3ajr_A           63 IDAIFHLAGILSAKGEKDPA-LAYKVNMNGTYNILEAAKQHR-VEKVVIPSTIGVFGPE-TPKNKVPSITI---------  130 (317)
T ss_dssp             CCEEEECCCCCHHHHHHCHH-HHHHHHHHHHHHHHHHHHHTT-CCEEEEEEEGGGCCTT-SCSSSBCSSSC---------
T ss_pred             CcEEEECCcccCCccccChH-HHhhhhhHHHHHHHHHHHHcC-CCEEEEecCHHHhCCC-CCCCCcccccc---------
Confidence            9999999986542 122444 789999999999999999988 8999999999998632 22345666653         


Q ss_pred             CCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCC--Cc-cHHHHHHHHhCCC-cccccCCC-ccceeH
Q 020104          162 DSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKF--AG-SVRSSLALILGNR-EEYGFLLN-TSMVHV  236 (331)
Q Consensus       162 ~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~--~~-~~~~~~~~~~~~~-~~~~~~~~-~~~i~v  236 (331)
                      ..|.++|+.+|..+|.+++.++.+++++++++||+.+||+...+..  .. ....+...+.+.. ..+..+.. ++|+|+
T Consensus       131 ~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v  210 (317)
T 3ajr_A          131 TRPRTMFGVTKIAAELLGQYYYEKFGLDVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYM  210 (317)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSSSCCCSCSSTHHHHHHHHHHTTCCEEECSCTTCCEEEEEH
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHhcCCeEEEEecCcEeccCCCCCCcchhHHHHHHHHHHhCCCceeecCccceeeeeEH
Confidence            3567899999999999999998888999999999999998643321  11 2222333333333 22333333 799999


Q ss_pred             HHHHHHHHHhhcCCCC----CceEEEeccccCHHHHHHHHHhhCCCCCCCCccCCcc-ccCCcCcccCcHHH-HHcCCcc
Q 020104          237 DDVARAHIFLLEYPDA----KGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAE-IEGYRAPGSSSKKL-LDAGFRY  310 (331)
Q Consensus       237 ~D~a~~~~~~~~~~~~----~~~~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~-~~lg~~~  310 (331)
                      +|+|++++.+++++..    +++||++++.+|+.|+++.+.+.+|...++....... ........+|++|+ +.|||+|
T Consensus       211 ~Dva~a~~~~l~~~~~~~~~g~~~~i~~~~~s~~e~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p  290 (317)
T 3ajr_A          211 PDALKALVDLYEADRDKLVLRNGYNVTAYTFTPSELYSKIKERIPEFEIEYKEDFRDKIAATWPESLDSSEASNEWGFSI  290 (317)
T ss_dssp             HHHHHHHHHHHHCCGGGCSSCSCEECCSEEECHHHHHHHHHTTCCSCCEEECCCHHHHHHTTSCSCBCCHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHhCCccccccCceEecCCccccHHHHHHHHHHHCCccccccccccchhhccccccccCHHHHHHHcCCCC
Confidence            9999999999987642    4789988788999999999999888433322111000 11223457899999 8899999


Q ss_pred             ccChhhhHHHHHHHHHHc
Q 020104          311 NYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       311 ~~~~~e~i~~~~~~~~~~  328 (331)
                      +++++++++++++|++++
T Consensus       291 ~~~~~~~l~~~~~~~~~~  308 (317)
T 3ajr_A          291 EYDLDRTIDDMIDHISEK  308 (317)
T ss_dssp             CCCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhh
Confidence            999999999999999765

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=100.00  E-value=6.1e-43  Score=314.75  Aligned_cols=311  Identities=20%  Similarity=0.241  Sum_probs=227.0

Q ss_pred             CceEEEecCcchhHHHHHHHHH-HCCCeEEEEecCCCCcccC----Ccccccc-ccCCCCC--CCc---EEEEeCCCCCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLL-DHGYSVTTTVRSELDPEHR----NSKDLSF-LKNLPGA--SER---LRIFHADLSHP   73 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~~~~~----~~~~~~~-~~~~~~~--~~~---~~~~~~D~~~~   73 (331)
                      +|+|||||||||||++++++|+ +.|++|++++|+.......    ..+.+.. +.++...  ..+   ++++.+|+.|+
T Consensus         2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~   81 (397)
T 1gy8_A            2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE   81 (397)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCCH
Confidence            3589999999999999999999 9999999999976210000    0111111 1111110  124   88999999999


Q ss_pred             ccHHHHhc--C-ccEEEEecccCCCC--CCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCC-----C
Q 020104           74 DGFDAAIA--G-CTGVLHVATPVDFE--DKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDK-----D  143 (331)
Q Consensus        74 ~~~~~~~~--~-~d~Vih~a~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~-----~  143 (331)
                      +++.++++  + +|+|||+|+.....  ..++. ..+++|+.++.+++++|++.+ +++|||+||.++|+....     .
T Consensus        82 ~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~-~~~~~Nv~g~~~ll~a~~~~~-~~~iv~~SS~~v~g~~~~~~~~~~  159 (397)
T 1gy8_A           82 DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPL-KYYDNNVVGILRLLQAMLLHK-CDKIIFSSSAAIFGNPTMGSVSTN  159 (397)
T ss_dssp             HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHH-HHHHHHHHHHHHHHHHHHHTT-CCEEEEEEEGGGTBSCCC-----C
T ss_pred             HHHHHHHHhcCCCCEEEECCCccCcCcchhhHH-HHHHHHhHHHHHHHHHHHHhC-CCEEEEECCHHHhCCCCccccccc
Confidence            99999987  6 99999999976421  22444 789999999999999999988 899999999999863221     1


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCC-------CCccHHHHH-
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPK-------FAGSVRSSL-  215 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~-------~~~~~~~~~-  215 (331)
                      ..+++|+++         ..|.+.|+.+|.++|.+++.++.+++++++++||+++|||+..+.       ....+..+. 
T Consensus       160 ~~~~~E~~~---------~~p~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~  230 (397)
T 1gy8_A          160 AEPIDINAK---------KSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILG  230 (397)
T ss_dssp             CCCBCTTSC---------CBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHH
T ss_pred             ccCcCccCC---------CCCCCchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCCccccccccccchhHHHHHHHH
Confidence            467788875         245678999999999999999988899999999999999975321       112233333 


Q ss_pred             ----HHHhCCC------------c-ccc------cCCC-ccceeHHHHHHHHHHhhcCCC-C-----C---ceEEEe-cc
Q 020104          216 ----ALILGNR------------E-EYG------FLLN-TSMVHVDDVARAHIFLLEYPD-A-----K---GRYICS-SH  261 (331)
Q Consensus       216 ----~~~~~~~------------~-~~~------~~~~-~~~i~v~D~a~~~~~~~~~~~-~-----~---~~~~~~-~~  261 (331)
                          ....+..            . .++      .+.. ++|+|++|+|++++.+++++. .     +   ++||++ ++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~ni~~~~  310 (397)
T 1gy8_A          231 RVMSDIAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSR  310 (397)
T ss_dssp             HHHHHHSCC-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSC
T ss_pred             HHHHHHHhcCccccccccccCCCceeecCcccCCCCCeeEeeEeHHHHHHHHHHHHhcccccccccccCCCcEEEeCCCC
Confidence                2223321            1 122      2233 799999999999999987543 2     3   789975 57


Q ss_pred             ccCHHHHHHHHHhhCCCCCCCCccCCc-cccCCcCcccCcHHH-HHcCCcccc-ChhhhHHHHHHHHHHc
Q 020104          262 TLTIQEMAEFLSAKYPEYPIPTVDSLA-EIEGYRAPGSSSKKL-LDAGFRYNY-GIDEMFDEAIQCCKEK  328 (331)
Q Consensus       262 ~~s~~e~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~-~~lg~~~~~-~~~e~i~~~~~~~~~~  328 (331)
                      .+|+.|+++.+.+.+|. +++.. ..+ .........+|++|+ +.|||+|++ +++++|+++++||+++
T Consensus       311 ~~s~~e~~~~i~~~~g~-~~~~~-~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~l~e~l~~~~~~~~~~  378 (397)
T 1gy8_A          311 GYSVREVIEVARKTTGH-PIPVR-ECGRREGDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQRTH  378 (397)
T ss_dssp             CEEHHHHHHHHHHHHCC-CCCEE-EECCCTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHHTC
T ss_pred             cccHHHHHHHHHHHhCC-CCCee-eCCCCCCcccccccCHHHHHHHhCCCCCcCCHHHHHHHHHHHHHhc
Confidence            89999999999998873 22210 111 112234577899999 889999999 9999999999999876

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=100.00  E-value=7.5e-43  Score=305.35  Aligned_cols=286  Identities=16%  Similarity=0.162  Sum_probs=220.3

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--C
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--G   82 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~   82 (331)
                      +|+|||||||||||++|+++|+++|++|+++.|+.                           .+|+.|.+++.++++  +
T Consensus         3 ~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~---------------------------~~D~~d~~~~~~~~~~~~   55 (321)
T 1e6u_A            3 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD---------------------------ELNLLDSRAVHDFFASER   55 (321)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT---------------------------TCCTTCHHHHHHHHHHHC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCc---------------------------cCCccCHHHHHHHHHhcC
Confidence            47899999999999999999999999999887754                           269999999999998  9


Q ss_pred             ccEEEEecccCCC---CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhh
Q 020104           83 CTGVLHVATPVDF---EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIR  159 (331)
Q Consensus        83 ~d~Vih~a~~~~~---~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~  159 (331)
                      +|+|||+|+....   ...++. ..+++|+.++.+++++|++.+ +++|||+||.++|+  .....+++|+++..     
T Consensus        56 ~d~vih~a~~~~~~~~~~~~~~-~~~~~n~~~~~~l~~~~~~~~-~~~~v~~SS~~vyg--~~~~~~~~E~~~~~-----  126 (321)
T 1e6u_A           56 IDQVYLAAAKVGGIVANNTYPA-DFIYQNMMIESNIIHAAHQND-VNKLLFLGSSCIYP--KLAKQPMAESELLQ-----  126 (321)
T ss_dssp             CSEEEECCCCCCCHHHHHHCHH-HHHHHHHHHHHHHHHHHHHTT-CCEEEEECCGGGSC--TTCCSSBCGGGTTS-----
T ss_pred             CCEEEEcCeecCCcchhhhCHH-HHHHHHHHHHHHHHHHHHHhC-CCeEEEEccHHHcC--CCCCCCcCcccccc-----
Confidence            9999999997541   123444 789999999999999999998 89999999999986  33456778876421     


Q ss_pred             hcCCC-CchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCC--CccHHHHHHHH-----hC-CCc-ccccCC
Q 020104          160 KLDSW-GKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKF--AGSVRSSLALI-----LG-NRE-EYGFLL  229 (331)
Q Consensus       160 ~~~~~-~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~--~~~~~~~~~~~-----~~-~~~-~~~~~~  229 (331)
                      ....| .+.|+.+|..+|++++.++.+++++++++||+.+|||+.....  ...+..++..+     .| .+. .++.+.
T Consensus       127 ~~~~p~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~  206 (321)
T 1e6u_A          127 GTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGT  206 (321)
T ss_dssp             SCCCGGGHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSC
T ss_pred             CCCCCCCCccHHHHHHHHHHHHHHHHHhCCCEEEEEeCCcCCcCCCCCCCCCccHHHHHHHHHHhhhcCCCceEEcCCCC
Confidence            01233 3589999999999999998888999999999999999865321  12333333222     23 232 234444


Q ss_pred             C-ccceeHHHHHHHHHHhhcCCCC---------CceEEEe-ccccCHHHHHHHHHhhCCCC-CCCCccCCccccCCcCcc
Q 020104          230 N-TSMVHVDDVARAHIFLLEYPDA---------KGRYICS-SHTLTIQEMAEFLSAKYPEY-PIPTVDSLAEIEGYRAPG  297 (331)
Q Consensus       230 ~-~~~i~v~D~a~~~~~~~~~~~~---------~~~~~~~-~~~~s~~e~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~  297 (331)
                      . ++|+|++|+|++++.+++++..         +++||++ ++.+|+.|+++.+.+.+|.. .+..  ...+........
T Consensus       207 ~~~~~i~v~Dva~~~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~--~~~~~~~~~~~~  284 (321)
T 1e6u_A          207 PMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVF--DASKPDGTPRKL  284 (321)
T ss_dssp             CEECEEEHHHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEE--ETTSCCCCSBCC
T ss_pred             EEEEeEEHHHHHHHHHHHHhCcccccccccccCCceEEeCCCCCccHHHHHHHHHHHhCCCCceEe--CCCCCCCccccc
Confidence            4 7999999999999999987654         4789974 57899999999999988732 1111  001112234578


Q ss_pred             cCcHHHHHcCCccccChhhhHHHHHHHHHHc
Q 020104          298 SSSKKLLDAGFRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       298 ~~~~k~~~lg~~~~~~~~e~i~~~~~~~~~~  328 (331)
                      +|++|++.|||+|+++++|+|+++++||+++
T Consensus       285 ~d~~k~~~lG~~p~~~~~~~l~~~~~~~~~~  315 (321)
T 1e6u_A          285 LDVTRLHQLGWYHEISLEAGLASTYQWFLEN  315 (321)
T ss_dssp             BCCHHHHHTTCCCCCCHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHhcCCccCCcHHHHHHHHHHHHHHH
Confidence            9999993399999999999999999999875

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=100.00  E-value=4.1e-42  Score=310.03  Aligned_cols=317  Identities=13%  Similarity=0.131  Sum_probs=225.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCccc--------CC----ccccccccCCCCCCCcEEEEeCCCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEH--------RN----SKDLSFLKNLPGASERLRIFHADLS   71 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--------~~----~~~~~~~~~~~~~~~~~~~~~~D~~   71 (331)
                      .+++|||||||||||++++++|+++|++|++++|.......        ..    .+.+..+...  ...+++++.+|+.
T Consensus        10 ~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~v~~~~~Dl~   87 (404)
T 1i24_A           10 HGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKAL--TGKSIELYVGDIC   87 (404)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHH--HCCCCEEEESCTT
T ss_pred             CCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhc--cCCceEEEECCCC
Confidence            46799999999999999999999999999999886410000        00    0011100000  0146889999999


Q ss_pred             CCccHHHHhcC--ccEEEEecccCCCC--CCChh--hHHHHHHHHHHHHHHHHHHhcCCc-cEEEEecccceeecCCCCC
Q 020104           72 HPDGFDAAIAG--CTGVLHVATPVDFE--DKEPE--EVITQRAINGTLGILKSCLKSGTV-KRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        72 ~~~~~~~~~~~--~d~Vih~a~~~~~~--~~~~~--~~~~~~n~~~~~~l~~~~~~~~~~-~~~v~~SS~~~~~~~~~~~  144 (331)
                      |.+++.+++++  +|+|||+|+.....  ..++.  ...+++|+.++.+++++|++.+ + ++|||+||.++|+..   .
T Consensus        88 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~-~~~~~V~~SS~~vyg~~---~  163 (404)
T 1i24_A           88 DFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFG-EECHLVKLGTMGEYGTP---N  163 (404)
T ss_dssp             SHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEECCGGGGCCC---S
T ss_pred             CHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhC-CCcEEEEeCcHHHhCCC---C
Confidence            99999999987  99999999975421  12332  1478999999999999999988 6 599999999998632   2


Q ss_pred             CcccCCCCCChh-----hhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCC------------
Q 020104          145 DMMDETFWSDVD-----YIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKF------------  207 (331)
Q Consensus       145 ~~~~E~~~~~~~-----~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~------------  207 (331)
                      .+++|+.+....     ....+..|.++|+.+|.++|.+++.++.+++++++++||+.||||+..+..            
T Consensus       164 ~~~~E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~~~~~~~~~~~~~~~~~~  243 (404)
T 1i24_A          164 IDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYD  243 (404)
T ss_dssp             SCBCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCS
T ss_pred             CCCCccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhcCCeEEEEecceeeCCCCCccccccccccccccc
Confidence            456665321000     000123567899999999999999998888999999999999999864210            


Q ss_pred             ---CccHHHHH-HHHhCCCc-ccccCCC-ccceeHHHHHHHHHHhhcCCCC-C--ceEEEeccccCHHHHHHHHHhh---
Q 020104          208 ---AGSVRSSL-ALILGNRE-EYGFLLN-TSMVHVDDVARAHIFLLEYPDA-K--GRYICSSHTLTIQEMAEFLSAK---  275 (331)
Q Consensus       208 ---~~~~~~~~-~~~~~~~~-~~~~~~~-~~~i~v~D~a~~~~~~~~~~~~-~--~~~~~~~~~~s~~e~~~~i~~~---  275 (331)
                         ...+..++ ....+.+. .++.+.. ++|+|++|+|++++.+++++.. +  ++||++++++|+.|+++.+.+.   
T Consensus       244 ~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~~l~~~~~~g~~~~yni~~~~~s~~e~~~~i~~~~~~  323 (404)
T 1i24_A          244 AVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVNELASLVTKAGSK  323 (404)
T ss_dssp             TTTCCHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCCTTCEEEEEECSEEEEHHHHHHHHHHHHHT
T ss_pred             cchhhHHHHHHHHHHcCCeeEEeCCCCceECcEEHHHHHHHHHHHHhCcccCCCceEEEECCCCCcHHHHHHHHHHHHHh
Confidence               12333333 33445543 3455444 7999999999999999987654 4  5899877889999999999987   


Q ss_pred             CCCCCCCCccCCccc---cCCcCcccCcHHHHHcCCccccChhhhHHHHHHHHHHc
Q 020104          276 YPEYPIPTVDSLAEI---EGYRAPGSSSKKLLDAGFRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       276 ~~~~~~~~~~~~~~~---~~~~~~~~~~~k~~~lg~~~~~~~~e~i~~~~~~~~~~  328 (331)
                      .|. +++.. ..+..   .......+|++|++.|||+|+++++++++++++|++..
T Consensus       324 ~g~-~~~~~-~~p~~~~~~~~~~~~~d~~k~~~LG~~p~~~~~~~l~~~~~~~~~~  377 (404)
T 1i24_A          324 LGL-DVKKM-TVPNPRVEAEEHYYNAKHTKLMELGLEPHYLSDSLLDSLLNFAVQF  377 (404)
T ss_dssp             TTC-CCCEE-EECCSSCSCSSCCCCBCCCHHHHTTCCCCCCCHHHHHHHHHHHHHT
T ss_pred             hCC-Ccccc-ccCcccCccccceEecCHHHHHHcCCCcCcCHHHHHHHHHHHHHhh
Confidence            552 11110 01111   12234567999997799999999999999999998653

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=100.00  E-value=3.4e-42  Score=307.55  Aligned_cols=307  Identities=18%  Similarity=0.154  Sum_probs=228.2

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCC--CCCcEEEEeCCCCCCccHHHHhcC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPG--ASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      ||+|||||||||||++++++|+++|++|++++|+.....   ...+..+.....  ...+++++.+|+.|.+++.+++++
T Consensus        24 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~  100 (375)
T 1t2a_A           24 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFN---TGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINE  100 (375)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCC---CTTTGGGC---------CEEEEECCTTCHHHHHHHHHH
T ss_pred             CcEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccc---hhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHh
Confidence            478999999999999999999999999999999873110   111222211000  124789999999999999999875


Q ss_pred             --ccEEEEecccCCCC--CCChhhHHHHHHHHHHHHHHHHHHhcCCc---cEEEEecccceeecCCCCCCcccCCCCCCh
Q 020104           83 --CTGVLHVATPVDFE--DKEPEEVITQRAINGTLGILKSCLKSGTV---KRVVYTSSNAAVFYNDKDVDMMDETFWSDV  155 (331)
Q Consensus        83 --~d~Vih~a~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~---~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~  155 (331)
                        +|+|||+|+.....  ..++. ..+++|+.++.+++++|++.+ +   ++|||+||.++|+  .....+++|+++   
T Consensus       101 ~~~d~vih~A~~~~~~~~~~~~~-~~~~~N~~g~~~l~~a~~~~~-~~~~~~iv~~SS~~~~~--~~~~~~~~E~~~---  173 (375)
T 1t2a_A          101 VKPTEIYNLGAQSHVKISFDLAE-YTADVDGVGTLRLLDAVKTCG-LINSVKFYQASTSELYG--KVQEIPQKETTP---  173 (375)
T ss_dssp             HCCSEEEECCSCCCHHHHHHSHH-HHHHHHTHHHHHHHHHHHHTT-CTTTCEEEEEEEGGGTC--SCSSSSBCTTSC---
T ss_pred             cCCCEEEECCCcccccccccCHH-HHHHHHHHHHHHHHHHHHHhC-CCccceEEEecchhhhC--CCCCCCCCccCC---
Confidence              79999999975421  22444 789999999999999999987 6   7999999999985  333567888875   


Q ss_pred             hhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCC-ccHHHHH-HHHhCCCc--ccccCCC-
Q 020104          156 DYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFA-GSVRSSL-ALILGNRE--EYGFLLN-  230 (331)
Q Consensus       156 ~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~-~~~~~~~-~~~~~~~~--~~~~~~~-  230 (331)
                            ..|.+.|+.+|.++|.+++.++.+++++++++||+.+|||+...... ..+..++ ....+...  .++.+.. 
T Consensus       174 ------~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~  247 (375)
T 1t2a_A          174 ------FYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAK  247 (375)
T ss_dssp             ------CCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCE
T ss_pred             ------CCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEecccccCCCCCCCcchHHHHHHHHHHHcCCCceeEeCCCCce
Confidence                  24567899999999999999998889999999999999997543221 1122222 23344432  3344444 


Q ss_pred             ccceeHHHHHHHHHHhhcCCCCCceEEE-eccccCHHHHHHHHHhhCCCC-C-----CCCc----------cCCc----c
Q 020104          231 TSMVHVDDVARAHIFLLEYPDAKGRYIC-SSHTLTIQEMAEFLSAKYPEY-P-----IPTV----------DSLA----E  289 (331)
Q Consensus       231 ~~~i~v~D~a~~~~~~~~~~~~~~~~~~-~~~~~s~~e~~~~i~~~~~~~-~-----~~~~----------~~~~----~  289 (331)
                      ++|+|++|+|++++.+++++. +++||+ +++.+|+.|+++.+.+.+|.. .     +|.+          ..+.    .
T Consensus       248 ~~~i~v~Dva~a~~~~~~~~~-~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  326 (375)
T 1t2a_A          248 RDWGHAKDYVEAMWLMLQNDE-PEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYR  326 (375)
T ss_dssp             ECCEEHHHHHHHHHHHHHSSS-CCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSC
T ss_pred             eeeEEHHHHHHHHHHHHhcCC-CceEEEeCCCcccHHHHHHHHHHHhCCCcccccccccccccccccccceeecCcccCC
Confidence            799999999999999998765 478986 467899999999999988732 1     1110          0000    0


Q ss_pred             ccCCcCcccCcHHH-HHcCCccccChhhhHHHHHHHHHHc
Q 020104          290 IEGYRAPGSSSKKL-LDAGFRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       290 ~~~~~~~~~~~~k~-~~lg~~~~~~~~e~i~~~~~~~~~~  328 (331)
                      ........+|++|+ +.|||+|+++++|+|+++++|+++.
T Consensus       327 ~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~  366 (375)
T 1t2a_A          327 PTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVEL  366 (375)
T ss_dssp             SSCCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHH
T ss_pred             cccchhhcCCHHHHHHhcCCCccCCHHHHHHHHHHHHHHh
Confidence            11223466899999 7899999999999999999999764

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=100.00  E-value=3.1e-42  Score=303.59  Aligned_cols=304  Identities=18%  Similarity=0.208  Sum_probs=222.8

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--Cc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--GC   83 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~   83 (331)
                      |+|||||||||||++++++|+++|++|++++|...    ........+....  ..+++++.+|+.|++++.++++  ++
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~   74 (338)
T 1udb_A            1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLG--GKHPTFVEGDIRNEALMTEILHDHAI   74 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS----CCTTHHHHHHHHH--TSCCEEEECCTTCHHHHHHHHHHTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCC----cchhHHHHHHhhc--CCcceEEEccCCCHHHHHHHhhccCC
Confidence            48999999999999999999999999999987541    1111111111110  1357889999999999998886  59


Q ss_pred             cEEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhc
Q 020104           84 TGVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKL  161 (331)
Q Consensus        84 d~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~  161 (331)
                      |+|||+|+....  ...++. ..+++|+.++.+++++|++.+ +++|||+||.++|+  .....+++|+++.        
T Consensus        75 D~vih~A~~~~~~~~~~~~~-~~~~~n~~~~~~l~~~~~~~~-~~~iv~~SS~~~~g--~~~~~~~~e~~~~--------  142 (338)
T 1udb_A           75 DTVIHFAGLKAVGESVQKPL-EYYDNNVNGTLRLISAMRAAN-VKNFIFSSSATVYG--DNPKIPYVESFPT--------  142 (338)
T ss_dssp             SEEEECCSCCCHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHT-CCEEEEEEEGGGGC--SCCSSSBCTTSCC--------
T ss_pred             CEEEECCccCccccchhcHH-HHHHHHHHHHHHHHHHHHhcC-CCeEEEEccHHHhC--CCCCCCcCcccCC--------
Confidence            999999986532  112344 789999999999999999988 89999999999985  3345677887642        


Q ss_pred             CCCCchhHhhHHHHHHHHHHHHHHc-CCcEEEeccCceeCCCCCC------C--CCccHHHHHHHHhCCCcc---cc---
Q 020104          162 DSWGKSYAISKTLTERAALEFAEEH-GLDLVTLIPSMVVGPFICP------K--FAGSVRSSLALILGNREE---YG---  226 (331)
Q Consensus       162 ~~~~~~Y~~~K~~~e~~~~~~~~~~-~~~~~ilRp~~v~G~~~~~------~--~~~~~~~~~~~~~~~~~~---~~---  226 (331)
                      .++.++|+.+|.++|.+++.++.++ +++++++||+++||+....      .  ....+..+.....+....   ++   
T Consensus       143 ~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  222 (338)
T 1udb_A          143 GTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDY  222 (338)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHHTSSSCEEEECSCS
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHhcCCCceEEEeeceecCCCcccccccccccchhhHHHHHHHHHHhcCCCcEEecCcc
Confidence            1236789999999999999998876 8999999999999985321      1  112233333333332211   11   


Q ss_pred             ---cCCC-ccceeHHHHHHHHHHhhcCC--CCC-ceEEEe-ccccCHHHHHHHHHhhCCCCCCCCccCCccccCCcCccc
Q 020104          227 ---FLLN-TSMVHVDDVARAHIFLLEYP--DAK-GRYICS-SHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGS  298 (331)
Q Consensus       227 ---~~~~-~~~i~v~D~a~~~~~~~~~~--~~~-~~~~~~-~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (331)
                         .+.. ++|+|++|+|++++.++++.  ..+ ++||++ ++.+|+.|+++.+.+.+|. +++...............+
T Consensus       223 ~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~  301 (338)
T 1udb_A          223 PTEDGTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGK-PVNYHFAPRREGDLPAYWA  301 (338)
T ss_dssp             SSSSSSCEECEEEHHHHHHHHHHHHHHHTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTS-CCCEEEECCCTTCCSBCCB
T ss_pred             cCCCCceeeeeEEHHHHHHHHHHHHhhhhccCCCcEEEecCCCceeHHHHHHHHHHHhCC-CCcceeCCCCCCchhhhhc
Confidence               2223 79999999999999988753  233 589975 5789999999999998872 2221000011122345678


Q ss_pred             CcHHH-HHcCCccccChhhhHHHHHHHHHHc
Q 020104          299 SSKKL-LDAGFRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       299 ~~~k~-~~lg~~~~~~~~e~i~~~~~~~~~~  328 (331)
                      |++|+ +.|||+|+++++|+++++++|++++
T Consensus       302 d~~k~~~~lG~~p~~~l~~~l~~~~~w~~~~  332 (338)
T 1udb_A          302 DASKADRELNWRVTRTLDEMAQDTWHWQSRH  332 (338)
T ss_dssp             CCHHHHHHHCCCCCCCHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHcCCCcCCCHHHHHHHHHHHHHhc
Confidence            99999 8899999999999999999999876

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=100.00  E-value=6.3e-43  Score=301.03  Aligned_cols=271  Identities=16%  Similarity=0.086  Sum_probs=215.0

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--Cc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--GC   83 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~   83 (331)
                      |+|||||||||||++++++|+++|++|++++|..                            +|+.|.+++.++++  ++
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~----------------------------~D~~d~~~~~~~~~~~~~   57 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKKL----------------------------LDITNISQVQQVVQEIRP   57 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTTT----------------------------SCTTCHHHHHHHHHHHCC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCEEEEecccc----------------------------cCCCCHHHHHHHHHhcCC
Confidence            4999999999999999999999999999998844                            78999999999997  79


Q ss_pred             cEEEEecccCCCC--CCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhc
Q 020104           84 TGVLHVATPVDFE--DKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKL  161 (331)
Q Consensus        84 d~Vih~a~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~  161 (331)
                      |+|||+|+.....  ..++. ..+++|+.++.+++++|++.+ + ||||+||.++|+  .....+++|+++         
T Consensus        58 d~vi~~a~~~~~~~~~~~~~-~~~~~n~~~~~~l~~~~~~~~-~-~~v~~SS~~vy~--~~~~~~~~E~~~---------  123 (287)
T 3sc6_A           58 HIIIHCAAYTKVDQAEKERD-LAYVINAIGARNVAVASQLVG-A-KLVYISTDYVFQ--GDRPEGYDEFHN---------  123 (287)
T ss_dssp             SEEEECCCCCCHHHHTTCHH-HHHHHHTHHHHHHHHHHHHHT-C-EEEEEEEGGGSC--CCCSSCBCTTSC---------
T ss_pred             CEEEECCcccChHHHhcCHH-HHHHHHHHHHHHHHHHHHHcC-C-eEEEEchhhhcC--CCCCCCCCCCCC---------
Confidence            9999999976522  24555 899999999999999999998 6 799999999985  445578899885         


Q ss_pred             CCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHh-CCCcccccCCCccceeHHHHH
Q 020104          162 DSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALIL-GNREEYGFLLNTSMVHVDDVA  240 (331)
Q Consensus       162 ~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~v~D~a  240 (331)
                      ..|.+.|+.+|..+|++++.++    .+++++||+.+|||+...    .+..+..... +.+........++|+|++|+|
T Consensus       124 ~~p~~~Y~~sK~~~E~~~~~~~----~~~~ilR~~~v~G~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva  195 (287)
T 3sc6_A          124 PAPINIYGASKYAGEQFVKELH----NKYFIVRTSWLYGKYGNN----FVKTMIRLGKEREEISVVADQIGSPTYVADLN  195 (287)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHC----SSEEEEEECSEECSSSCC----HHHHHHHHHTTCSEEEEECSCEECCEEHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHhC----CCcEEEeeeeecCCCCCc----HHHHHHHHHHcCCCeEeecCcccCceEHHHHH
Confidence            3567899999999999998864    478999999999997432    3333443333 333333222337999999999


Q ss_pred             HHHHHhhcCCCCCceEEEe-ccccCHHHHHHHHHhhCCCC-CCCCcc--CCcc-ccCCcCcccCcHHHHHcCCccccChh
Q 020104          241 RAHIFLLEYPDAKGRYICS-SHTLTIQEMAEFLSAKYPEY-PIPTVD--SLAE-IEGYRAPGSSSKKLLDAGFRYNYGID  315 (331)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~i~~~~~~~-~~~~~~--~~~~-~~~~~~~~~~~~k~~~lg~~~~~~~~  315 (331)
                      ++++.+++++. +++||++ ++.+|+.|+++.+.+.+|.. .+....  .+.. ........+|++|++.|||+|.++++
T Consensus       196 ~~~~~~~~~~~-~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lg~~p~~~~~  274 (287)
T 3sc6_A          196 VMINKLIHTSL-YGTYHVSNTGSCSWFEFAKKIFSYANMKVNVLPVSTEEFGAAAARPKYSIFQHNMLRLNGFLQMPSWE  274 (287)
T ss_dssp             HHHHHHHTSCC-CEEEECCCBSCEEHHHHHHHHHHHHTCCCEEEEECHHHHCCSSCCCSBCCBCCHHHHHTTCCCCCBHH
T ss_pred             HHHHHHHhCCC-CCeEEEcCCCcccHHHHHHHHHHHcCCCcceeeeehhhcCcccCCCCcccccHHHHHhhCCCCCccHH
Confidence            99999999887 8899975 57799999999999988732 111000  0011 13334578999999999999999999


Q ss_pred             hhHHHHHHHHHH
Q 020104          316 EMFDEAIQCCKE  327 (331)
Q Consensus       316 e~i~~~~~~~~~  327 (331)
                      ++|+++++|+++
T Consensus       275 ~~l~~~~~~~~~  286 (287)
T 3sc6_A          275 EGLERFFIETKS  286 (287)
T ss_dssp             HHHHHHHHHTC-
T ss_pred             HHHHHHHHHHhc
Confidence            999999999865

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=100.00  E-value=1.1e-41  Score=298.91  Aligned_cols=291  Identities=18%  Similarity=0.189  Sum_probs=220.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|+|||||||||||++++++|+++|++|++++|+..     ....  .+..+    .+++++.+|+.|.+++.++++  
T Consensus        19 ~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~-----~~~~--~~~~l----~~v~~~~~Dl~d~~~~~~~~~~~   87 (330)
T 2pzm_A           19 SHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFAT-----GKRE--VLPPV----AGLSVIEGSVTDAGLLERAFDSF   87 (330)
T ss_dssp             TCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSS-----SCGG--GSCSC----TTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCc-----cchh--hhhcc----CCceEEEeeCCCHHHHHHHHhhc
Confidence            3578999999999999999999999999999999762     1111  11111    478999999999999999998  


Q ss_pred             CccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhc
Q 020104           82 GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKL  161 (331)
Q Consensus        82 ~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~  161 (331)
                      ++|+|||+|+.......... . +++|+.++.+++++|.+.+ +++|||+||.++|+.......+++|++          
T Consensus        88 ~~D~vih~A~~~~~~~~~~~-~-~~~N~~~~~~l~~a~~~~~-~~~iV~~SS~~~~~~~~~~~~~~~E~~----------  154 (330)
T 2pzm_A           88 KPTHVVHSAAAYKDPDDWAE-D-AATNVQGSINVAKAASKAG-VKRLLNFQTALCYGRPATVPIPIDSPT----------  154 (330)
T ss_dssp             CCSEEEECCCCCSCTTCHHH-H-HHHHTHHHHHHHHHHHHHT-CSEEEEEEEGGGGCSCSSSSBCTTCCC----------
T ss_pred             CCCEEEECCccCCCccccCh-h-HHHHHHHHHHHHHHHHHcC-CCEEEEecCHHHhCCCccCCCCcCCCC----------
Confidence            99999999997654211122 4 8999999999999999988 899999999999852211112667765          


Q ss_pred             CCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHH-hCCCcccccCCCccceeHHHHH
Q 020104          162 DSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALI-LGNREEYGFLLNTSMVHVDDVA  240 (331)
Q Consensus       162 ~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~v~D~a  240 (331)
                       .|.+.|+.+|.++|.+++.+    +++++++||+++|||+..   ...+..+.... .+. ..++.+..++++|++|+|
T Consensus       155 -~~~~~Y~~sK~~~e~~~~~~----~~~~~~iR~~~v~gp~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~Dva  225 (330)
T 2pzm_A          155 -APFTSYGISKTAGEAFLMMS----DVPVVSLRLANVTGPRLA---IGPIPTFYKRLKAGQ-KCFCSDTVRDFLDMSDFL  225 (330)
T ss_dssp             -CCCSHHHHHHHHHHHHHHTC----SSCEEEEEECEEECTTCC---SSHHHHHHHHHHTTC-CCCEESCEECEEEHHHHH
T ss_pred             -CCCChHHHHHHHHHHHHHHc----CCCEEEEeeeeeECcCCC---CCHHHHHHHHHHcCC-EEeCCCCEecceeHHHHH
Confidence             23568999999999999875    799999999999999852   12333333322 333 333322246899999999


Q ss_pred             H-HHHHhhcCCCCCceEEEe-ccccCHHHHHHHHHhhCCCCCCCCccCCccccCCcCcccCcHHH-----HHcCCccccC
Q 020104          241 R-AHIFLLEYPDAKGRYICS-SHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSSKKL-----LDAGFRYNYG  313 (331)
Q Consensus       241 ~-~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~lg~~~~~~  313 (331)
                      + +++.+++++. +++||++ ++.+|+.|+++.+.+.+|...+..   .+.........+|++|+     +.|||+|+++
T Consensus       226 ~~a~~~~~~~~~-g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~---~~~~~~~~~~~~d~~k~~~~~l~~lG~~p~~~  301 (330)
T 2pzm_A          226 AIADLSLQEGRP-TGVFNVSTGEGHSIKEVFDVVLDYVGATLAEP---VPVVAPGADDVPSVVLDPSKTETEFGWKAKVD  301 (330)
T ss_dssp             HHHHHHTSTTCC-CEEEEESCSCCEEHHHHHHHHHHHHTCCCSSC---CCEECCCTTSCSEECBCCHHHHHHHCCCCCCC
T ss_pred             HHHHHHHhhcCC-CCEEEeCCCCCCCHHHHHHHHHHHhCCCCcee---CCCCcchhhccCCHHHHhhchHHHcCCcccCC
Confidence            9 9999998866 7889975 478999999999999887432211   11111234556777776     7799999989


Q ss_pred             hhhhHHHHHHHHHHcCCC
Q 020104          314 IDEMFDEAIQCCKEKGYL  331 (331)
Q Consensus       314 ~~e~i~~~~~~~~~~~~~  331 (331)
                      ++++|+++++||+++|++
T Consensus       302 ~~~~l~~~~~~~~~~~~~  319 (330)
T 2pzm_A          302 FKDTITGQLAWYDKYGVT  319 (330)
T ss_dssp             HHHHHHHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHHHHhhCcc
Confidence            999999999999998864

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=100.00  E-value=1.2e-41  Score=303.79  Aligned_cols=307  Identities=16%  Similarity=0.157  Sum_probs=224.3

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCC-CCCCCcEEEEeCCCCCCccHHHHhcC-
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNL-PGASERLRIFHADLSHPDGFDAAIAG-   82 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~-   82 (331)
                      ||+|||||||||||++++++|+++|++|++++|+....   ....+..+.+. .....+++++.+|+.|.+++.+++++ 
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   77 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSF---NTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREV   77 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC------------------------CCEEECCCCSSCHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCccc---chHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhc
Confidence            46899999999999999999999999999999986210   01112111110 00124788999999999999998875 


Q ss_pred             -ccEEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcCCc---cEEEEecccceeecCCCCCCcccCCCCCChh
Q 020104           83 -CTGVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSGTV---KRVVYTSSNAAVFYNDKDVDMMDETFWSDVD  156 (331)
Q Consensus        83 -~d~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~---~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~  156 (331)
                       +|+|||+|+....  ...++. ..+++|+.++.+++++|++.+ +   ++|||+||.++|+  .....+++|+++    
T Consensus        78 ~~d~vih~A~~~~~~~~~~~~~-~~~~~n~~~~~~l~~~~~~~~-~~~~~~iv~~SS~~v~g--~~~~~~~~E~~~----  149 (372)
T 1db3_A           78 QPDEVYNLGAMSHVAVSFESPE-YTADVDAMGTLRLLEAIRFLG-LEKKTRFYQASTSELYG--LVQEIPQKETTP----  149 (372)
T ss_dssp             CCSEEEECCCCCTTTTTTSCHH-HHHHHHTHHHHHHHHHHHHTT-CTTTCEEEEEEEGGGGT--TCCSSSBCTTSC----
T ss_pred             CCCEEEECCcccCccccccCHH-HHHHHHHHHHHHHHHHHHHhC-CCCCcEEEEeCChhhhC--CCCCCCCCccCC----
Confidence             7999999997542  233454 788999999999999999987 7   7999999999985  333457888875    


Q ss_pred             hhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCC-ccHHHHHH-HHhCCCc--ccccCCC-c
Q 020104          157 YIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFA-GSVRSSLA-LILGNRE--EYGFLLN-T  231 (331)
Q Consensus       157 ~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~-~~~~~~~~-~~~~~~~--~~~~~~~-~  231 (331)
                           ..|.+.|+.+|.++|.+++.++.+++++++++|++.+|||+...... ..+..++. ...+...  .++.+.. +
T Consensus       150 -----~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~  224 (372)
T 1db3_A          150 -----FYPRSPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLR  224 (372)
T ss_dssp             -----CCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEE
T ss_pred             -----CCCCChHHHHHHHHHHHHHHHHHHhCCCeEEEEECCccCCCCCCcchhhHHHHHHHHHHcCCCCceeecCCCcee
Confidence                 24577899999999999999998889999999999999997643221 11222222 2334432  3344444 7


Q ss_pred             cceeHHHHHHHHHHhhcCCCCCceEEE-eccccCHHHHHHHHHhhCCC-CC-----CCCc--------------------
Q 020104          232 SMVHVDDVARAHIFLLEYPDAKGRYIC-SSHTLTIQEMAEFLSAKYPE-YP-----IPTV--------------------  284 (331)
Q Consensus       232 ~~i~v~D~a~~~~~~~~~~~~~~~~~~-~~~~~s~~e~~~~i~~~~~~-~~-----~~~~--------------------  284 (331)
                      +|+|++|+|++++.+++++. +++||+ +++.+|+.|+++.+.+.+|. ..     +|.+                    
T Consensus       225 ~~i~v~Dva~a~~~~~~~~~-~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  303 (372)
T 1db3_A          225 DWGHAKDYVKMQWMMLQQEQ-PEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVI  303 (372)
T ss_dssp             CCEEHHHHHHHHHHTTSSSS-CCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCEE
T ss_pred             eeeEHHHHHHHHHHHHhcCC-CceEEEcCCCceeHHHHHHHHHHHhCCCcccccccccccccccccccccccccccccce
Confidence            99999999999999998765 578986 45789999999999998872 11     1110                    


Q ss_pred             cCC-c---cccCCcCcccCcHHH-HHcCCccccChhhhHHHHHHHHHHc
Q 020104          285 DSL-A---EIEGYRAPGSSSKKL-LDAGFRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       285 ~~~-~---~~~~~~~~~~~~~k~-~~lg~~~~~~~~e~i~~~~~~~~~~  328 (331)
                      ..+ +   .........+|++|+ +.|||+|+++++|+|+++++||+++
T Consensus       304 ~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~  352 (372)
T 1db3_A          304 IAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEA  352 (372)
T ss_dssp             EEECGGGCCCCC-CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHH
T ss_pred             eeccccccCCCchhhhccCHHHHHHHhCCccccCHHHHHHHHHHHHHHh
Confidence            000 0   011223466799999 8899999999999999999999764

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=100.00  E-value=3.3e-41  Score=296.34  Aligned_cols=290  Identities=21%  Similarity=0.172  Sum_probs=218.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG-   82 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~-   82 (331)
                      .||+|||||||||||++++++|+++|++|++++|+..     ..  ...+..+    .+++++.+|+.|.+++.+++++ 
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~-----~~--~~~l~~~----~~~~~~~~Dl~d~~~~~~~~~~~   88 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFAT-----GR--REHLKDH----PNLTFVEGSIADHALVNQLIGDL   88 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS-----CC--GGGSCCC----TTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCc-----cc--hhhHhhc----CCceEEEEeCCCHHHHHHHHhcc
Confidence            4679999999999999999999999999999999862     11  1111111    4789999999999999999987 


Q ss_pred             -ccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecC--CCCCCcccCCCCCChhhhh
Q 020104           83 -CTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYN--DKDVDMMDETFWSDVDYIR  159 (331)
Q Consensus        83 -~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~--~~~~~~~~E~~~~~~~~~~  159 (331)
                       +|+|||+|+..... ...... +++|+.++.+++++|++.+ +++|||+||.++|+..  .... +++|++        
T Consensus        89 ~~D~vih~A~~~~~~-~~~~~~-~~~N~~~~~~l~~a~~~~~-~~~iV~~SS~~~~g~~~~~~~~-~~~E~~--------  156 (333)
T 2q1w_A           89 QPDAVVHTAASYKDP-DDWYND-TLTNCVGGSNVVQAAKKNN-VGRFVYFQTALCYGVKPIQQPV-RLDHPR--------  156 (333)
T ss_dssp             CCSEEEECCCCCSCT-TCHHHH-HHHHTHHHHHHHHHHHHTT-CSEEEEEEEGGGGCSCCCSSSB-CTTSCC--------
T ss_pred             CCcEEEECceecCCC-ccCChH-HHHHHHHHHHHHHHHHHhC-CCEEEEECcHHHhCCCcccCCC-CcCCCC--------
Confidence             99999999976542 112213 8999999999999999988 8999999999988511  2222 667764        


Q ss_pred             hcCCCC-chhHhhHHHHHHHHHH-HHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHH-HhCCCcccccCCC-cccee
Q 020104          160 KLDSWG-KSYAISKTLTERAALE-FAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLAL-ILGNREEYGFLLN-TSMVH  235 (331)
Q Consensus       160 ~~~~~~-~~Y~~~K~~~e~~~~~-~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~i~  235 (331)
                         .|. +.|+.+|.++|.+++. ++     +++++||+++|||+..   ...+..+... ..+. ..++ +.. ++++|
T Consensus       157 ---~p~~~~Y~~sK~~~E~~~~~s~~-----~~~ilR~~~v~gp~~~---~~~~~~~~~~~~~~~-~~~~-~~~~~~~i~  223 (333)
T 2q1w_A          157 ---NPANSSYAISKSANEDYLEYSGL-----DFVTFRLANVVGPRNV---SGPLPIFFQRLSEGK-KCFV-TKARRDFVF  223 (333)
T ss_dssp             ---CCTTCHHHHHHHHHHHHHHHHTC-----CEEEEEESEEESTTCC---SSHHHHHHHHHHTTC-CCEE-EECEECEEE
T ss_pred             ---CCCCCchHHHHHHHHHHHHhhhC-----CeEEEeeceEECcCCc---CcHHHHHHHHHHcCC-eeeC-CCceEeeEE
Confidence               234 6899999999999987 54     8999999999999832   2233333332 2333 3333 233 79999


Q ss_pred             HHHHHHHHHHhhcCCCCCceEEEe-ccccCHHHHHHHHHhhCCCCCCCCccCCccc--cCCcCcccCcHHH-HHcCCccc
Q 020104          236 VDDVARAHIFLLEYPDAKGRYICS-SHTLTIQEMAEFLSAKYPEYPIPTVDSLAEI--EGYRAPGSSSKKL-LDAGFRYN  311 (331)
Q Consensus       236 v~D~a~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~k~-~~lg~~~~  311 (331)
                      ++|+|++++.+++++. +++||++ ++.+|+.|+++.+.+.+|...+.......+.  .......+|++|+ +. ||+|.
T Consensus       224 v~Dva~ai~~~~~~~~-g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~-G~~p~  301 (333)
T 2q1w_A          224 VKDLARATVRAVDGVG-HGAYHFSSGTDVAIKELYDAVVEAMALPSYPEPEIRELGPDDAPSILLDPSRTIQDF-GKIEF  301 (333)
T ss_dssp             HHHHHHHHHHHHTTCC-CEEEECSCSCCEEHHHHHHHHHHHTTCSSCCCCEEEECCTTSCCCCCBCCHHHHHHH-CCCCC
T ss_pred             HHHHHHHHHHHHhcCC-CCEEEeCCCCCccHHHHHHHHHHHhCCCCceeCCCCCcccccccccccCCHHHHHhc-CCCcC
Confidence            9999999999998876 7889975 5789999999999999884322110000011  1125678999999 55 99999


Q ss_pred             cChhhhHHHHHHHHHHcCCC
Q 020104          312 YGIDEMFDEAIQCCKEKGYL  331 (331)
Q Consensus       312 ~~~~e~i~~~~~~~~~~~~~  331 (331)
                      ++++++|+++++||+++|.|
T Consensus       302 ~~~~~~l~~~~~~~~~~~~~  321 (333)
T 2q1w_A          302 TPLKETVAAAVAYFREYGVS  321 (333)
T ss_dssp             CCHHHHHHHHHHHHHHHCC-
T ss_pred             CCHHHHHHHHHHHHHHHCCC
Confidence            99999999999999998864

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=100.00  E-value=8.1e-42  Score=305.76  Aligned_cols=306  Identities=16%  Similarity=0.133  Sum_probs=226.3

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCC-CCCCC-cEEEEeCCCCCCccHHHHhcC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNL-PGASE-RLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      +|+|||||||||||++++++|++.|++|++++|+.....   ...+..+... ..... +++++.+|+.|.+++.+++++
T Consensus        28 ~k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~  104 (381)
T 1n7h_A           28 RKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFN---TQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDV  104 (381)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCC---CTTTTTTC--------CCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCcccc---chhhhhhhhccccccccceEEEECCCCCHHHHHHHHHh
Confidence            368999999999999999999999999999999873110   0111111110 00112 788999999999999999875


Q ss_pred             --ccEEEEecccCCCC--CCChhhHHHHHHHHHHHHHHHHHHhcCCcc-----EEEEecccceeecCCCCCCcccCCCCC
Q 020104           83 --CTGVLHVATPVDFE--DKEPEEVITQRAINGTLGILKSCLKSGTVK-----RVVYTSSNAAVFYNDKDVDMMDETFWS  153 (331)
Q Consensus        83 --~d~Vih~a~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-----~~v~~SS~~~~~~~~~~~~~~~E~~~~  153 (331)
                        +|+|||+|+.....  ..++. ..+++|+.++.+++++|++.+ ++     +|||+||.++|+.  ... +++|+++ 
T Consensus       105 ~~~d~Vih~A~~~~~~~~~~~~~-~~~~~nv~~~~~l~~a~~~~~-~~~~~~~~~v~~SS~~vyg~--~~~-~~~E~~~-  178 (381)
T 1n7h_A          105 IKPDEVYNLAAQSHVAVSFEIPD-YTADVVATGALRLLEAVRSHT-IDSGRTVKYYQAGSSEMFGS--TPP-PQSETTP-  178 (381)
T ss_dssp             HCCSEEEECCSCCCHHHHHHSHH-HHHHHHTHHHHHHHHHHHHHH-HHHCCCCEEEEEEEGGGGTT--SCS-SBCTTSC-
T ss_pred             cCCCEEEECCcccCccccccCHH-HHHHHHHHHHHHHHHHHHHhC-CccCCccEEEEeCcHHHhCC--CCC-CCCCCCC-
Confidence              79999999975421  22444 789999999999999999887 66     9999999999863  223 7888874 


Q ss_pred             ChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCC-ccHHHHH-HHHhCCCc--ccccCC
Q 020104          154 DVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFA-GSVRSSL-ALILGNRE--EYGFLL  229 (331)
Q Consensus       154 ~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~-~~~~~~~-~~~~~~~~--~~~~~~  229 (331)
                              ..|.+.|+.+|..+|.+++.++.+++++++++|++++|||+...... ..+..++ ....+...  .++.+.
T Consensus       179 --------~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~  250 (381)
T 1n7h_A          179 --------FHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQ  250 (381)
T ss_dssp             --------CCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTT
T ss_pred             --------CCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeCceeCCCCCCcchhHHHHHHHHHHHcCCCCeEEeCCCC
Confidence                    35577899999999999999998889999999999999998643221 1122222 23344432  234333


Q ss_pred             C-ccceeHHHHHHHHHHhhcCCCCCceEEEe-ccccCHHHHHHHHHhhCCCCC---CCCccCCccccCCcCcccCcHHH-
Q 020104          230 N-TSMVHVDDVARAHIFLLEYPDAKGRYICS-SHTLTIQEMAEFLSAKYPEYP---IPTVDSLAEIEGYRAPGSSSKKL-  303 (331)
Q Consensus       230 ~-~~~i~v~D~a~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~k~-  303 (331)
                      . ++|+|++|+|++++.+++++. +++||++ ++.+|+.|+++.+.+.+|...   ++...............+|++|+ 
T Consensus       251 ~~~~~v~v~Dva~a~~~~~~~~~-~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~  329 (381)
T 1n7h_A          251 ASRDWGFAGDYVEAMWLMLQQEK-PDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKAK  329 (381)
T ss_dssp             CEEECEEHHHHHHHHHHHHTSSS-CCEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGGGSCSSCCCBCCBCCHHHH
T ss_pred             ceeeeEEHHHHHHHHHHHHhCCC-CCeEEeeCCCCCcHHHHHHHHHHHcCCCcccccccCcccCCccccccccCCHHHHH
Confidence            3 799999999999999998765 4789875 578999999999999988321   11100001112234567899999 


Q ss_pred             HHcCCccccChhhhHHHHHHHHHHc
Q 020104          304 LDAGFRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       304 ~~lg~~~~~~~~e~i~~~~~~~~~~  328 (331)
                      +.|||+|+++++++|+++++||+++
T Consensus       330 ~~lG~~p~~~l~e~l~~~~~~~~~~  354 (381)
T 1n7h_A          330 EVLGWKPQVGFEKLVKMMVDEDLEL  354 (381)
T ss_dssp             HHHCCCCCSCHHHHHHHHHHHHHHH
T ss_pred             HhcCCcccCCHHHHHHHHHHHHHhh
Confidence            7899999889999999999999764

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=100.00  E-value=1.8e-41  Score=299.45  Aligned_cols=303  Identities=17%  Similarity=0.140  Sum_probs=227.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG--   82 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--   82 (331)
                      +|+|||||||||||++++++|+++|++|++++|+..     .... ..+.... ...+++++.+|+.|.+++.+++++  
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~-----~~~~-~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~   75 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSG-----EFAS-WRLKELG-IENDVKIIHMDLLEFSNIIRTIEKVQ   75 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCS-----TTTT-HHHHHTT-CTTTEEECCCCTTCHHHHHHHHHHHC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCc-----cccc-ccHhhcc-ccCceeEEECCCCCHHHHHHHHHhcC
Confidence            478999999999999999999999999999999872     2111 1111111 124789999999999999999875  


Q ss_pred             ccEEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcCCc-cEEEEecccceeecCCCCCCcccCCCCCChhhhh
Q 020104           83 CTGVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSGTV-KRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIR  159 (331)
Q Consensus        83 ~d~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~  159 (331)
                      +|+|||+|+....  ...++. ..+++|+.++.+++++|++.+ + ++|||+||.++|+  .....+++|+++       
T Consensus        76 ~d~vih~A~~~~~~~~~~~~~-~~~~~Nv~g~~~l~~a~~~~~-~~~~iv~~SS~~vyg--~~~~~~~~e~~~-------  144 (345)
T 2z1m_A           76 PDEVYNLAAQSFVGVSFEQPI-LTAEVDAIGVLRILEALRTVK-PDTKFYQASTSEMFG--KVQEIPQTEKTP-------  144 (345)
T ss_dssp             CSEEEECCCCCCHHHHTTSHH-HHHHHHTHHHHHHHHHHHHHC-TTCEEEEEEEGGGGC--SCSSSSBCTTSC-------
T ss_pred             CCEEEECCCCcchhhhhhCHH-HHHHHHHHHHHHHHHHHHHhC-CCceEEEEechhhcC--CCCCCCCCccCC-------
Confidence            6999999997542  133455 889999999999999999887 6 8999999999986  334557788764       


Q ss_pred             hcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCC-ccHHHHH-HHHhCCCc--ccccCCC-ccce
Q 020104          160 KLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFA-GSVRSSL-ALILGNRE--EYGFLLN-TSMV  234 (331)
Q Consensus       160 ~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~-~~~~~~~-~~~~~~~~--~~~~~~~-~~~i  234 (331)
                        ..|.++|+.+|..+|.+++.++.+++++++++|+.++|||+...... ..+.... ....+...  .++.+.. ++|+
T Consensus       145 --~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (345)
T 2z1m_A          145 --FYPRSPYAVAKLFGHWITVNYREAYNMFACSGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWG  222 (345)
T ss_dssp             --CCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEECCE
T ss_pred             --CCCCChhHHHHHHHHHHHHHHHHHhCCceEeeeeeeecCCCCCCcchhHHHHHHHHHHHcCCCCeeeeCCCCceeeeE
Confidence              34567899999999999999998889999999999999998543211 1111122 22234332  2333333 6899


Q ss_pred             eHHHHHHHHHHhhcCCCCCceEEE-eccccCHHHHHHHHHhhCCCC-C-----CCCc----------cCCc----cccCC
Q 020104          235 HVDDVARAHIFLLEYPDAKGRYIC-SSHTLTIQEMAEFLSAKYPEY-P-----IPTV----------DSLA----EIEGY  293 (331)
Q Consensus       235 ~v~D~a~~~~~~~~~~~~~~~~~~-~~~~~s~~e~~~~i~~~~~~~-~-----~~~~----------~~~~----~~~~~  293 (331)
                      |++|+|++++.+++++. +++||+ +++.+|+.|+++.+.+.+|.. .     +|.+          ..+.    .....
T Consensus       223 ~v~Dva~a~~~~~~~~~-~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  301 (345)
T 2z1m_A          223 YAPEYVEAMWLMMQQPE-PDDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGIDRNTGKVIVEVSEEFFRPAEV  301 (345)
T ss_dssp             EHHHHHHHHHHHHTSSS-CCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSCC
T ss_pred             EHHHHHHHHHHHHhCCC-CceEEEeCCCCccHHHHHHHHHHHhCCCccccccccccccccccccccccccCcccCCCCCc
Confidence            99999999999998765 478986 567899999999999988832 1     1110          0000    01122


Q ss_pred             cCcccCcHHH-HHcCCccccChhhhHHHHHHHHHHc
Q 020104          294 RAPGSSSKKL-LDAGFRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       294 ~~~~~~~~k~-~~lg~~~~~~~~e~i~~~~~~~~~~  328 (331)
                      ....+|++|+ +.|||+|+++++|+++++++|++++
T Consensus       302 ~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~  337 (345)
T 2z1m_A          302 DILVGNPEKAMKKLGWKPRTTFDELVEIMMEADLKR  337 (345)
T ss_dssp             CBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHH
T ss_pred             ceeecCHHHHHHHcCCcccCCHHHHHHHHHHHHHHH
Confidence            3456799999 7899999989999999999999764

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=100.00  E-value=6.8e-42  Score=303.62  Aligned_cols=295  Identities=18%  Similarity=0.166  Sum_probs=222.5

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      +|+|||||||||||++|+++|+++| ++|++++|+..     .. ....+       .++. +.+|+.|.+.+.++++  
T Consensus        46 ~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~-----~~-~~~~~-------~~~~-~~~d~~~~~~~~~~~~~~  111 (357)
T 2x6t_A           46 GRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKD-----GT-KFVNL-------VDLN-IADYMDKEDFLIQIMAGE  111 (357)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSS-----GG-GGGGT-------TTSC-CSEEEEHHHHHHHHHTTC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCC-----cc-hhhcc-------cCce-EeeecCcHHHHHHHHhhc
Confidence            4789999999999999999999999 99999999762     11 11111       1222 6789999888988887  


Q ss_pred             ---CccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhh
Q 020104           82 ---GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYI  158 (331)
Q Consensus        82 ---~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~  158 (331)
                         ++|+|||+|+.......++. ..+++|+.++.+++++|++.+ + +|||+||.++|+  .....+++|+++      
T Consensus       112 ~~~~~d~Vih~A~~~~~~~~~~~-~~~~~n~~~~~~ll~a~~~~~-~-r~V~~SS~~v~g--~~~~~~~~E~~~------  180 (357)
T 2x6t_A          112 EFGDVEAIFHEGACSSTTEWDGK-YMMDNNYQYSKELLHYCLERE-I-PFLYASSAATYG--GRTSDFIESREY------  180 (357)
T ss_dssp             CCSSCCEEEECCSCCCTTCCCHH-HHHHHTHHHHHHHHHHHHHHT-C-CEEEEEEGGGGC--SCSSCCCSSGGG------
T ss_pred             ccCCCCEEEECCcccCCccCCHH-HHHHHHHHHHHHHHHHHHHcC-C-eEEEEcchHHhC--CCCCCCcCCcCC------
Confidence               59999999997665444555 899999999999999999998 7 999999999985  333457777763      


Q ss_pred             hhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCC--CCccHHHHHHH-HhCCCc-ccccCC--Ccc
Q 020104          159 RKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPK--FAGSVRSSLAL-ILGNRE-EYGFLL--NTS  232 (331)
Q Consensus       159 ~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~--~~~~~~~~~~~-~~~~~~-~~~~~~--~~~  232 (331)
                         ..|.+.|+.+|..+|.+++.++.+++++++++||+.+|||+....  ....+..+... ..+... .++.+.  .++
T Consensus       181 ---~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (357)
T 2x6t_A          181 ---EKPLNVFGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRD  257 (357)
T ss_dssp             ---CCCSSHHHHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCTTCGGGSCHHHHHHHHHHTTCCCEEETTGGGCEEC
T ss_pred             ---CCCCChhHHHHHHHHHHHHHHHHHcCCCEEEEecCeEECCCCCCCcccchHHHHHHHHHHcCCCcEEeCCCCcceEc
Confidence               355779999999999999999888899999999999999986531  12233333333 334432 233332  358


Q ss_pred             ceeHHHHHHHHHHhhcCCCCCceEEEe-ccccCHHHHHHHHHhhCCCCCCCCccCCccc--cCCcCcccCcHHHHHcCC-
Q 020104          233 MVHVDDVARAHIFLLEYPDAKGRYICS-SHTLTIQEMAEFLSAKYPEYPIPTVDSLAEI--EGYRAPGSSSKKLLDAGF-  308 (331)
Q Consensus       233 ~i~v~D~a~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~k~~~lg~-  308 (331)
                      |+|++|+|++++.+++++. +++||++ ++.+|+.|+++.+.+.+|...++........  .......+|++|++.||| 
T Consensus       258 ~i~v~Dva~ai~~~~~~~~-~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lG~~  336 (357)
T 2x6t_A          258 FVYVGDVADVNLWFLENGV-SGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYD  336 (357)
T ss_dssp             EEEHHHHHHHHHHHHHHCC-CEEEEESCSCCEEHHHHHHHHHHHHTCCCCEEECCCGGGTTSCCSBCCCCCHHHHHTTCC
T ss_pred             cEEHHHHHHHHHHHHhcCC-CCeEEecCCCcccHHHHHHHHHHHcCCCCceecCCCcccccccccccccCHHHHHHcCCC
Confidence            9999999999999998776 7899975 5789999999999998874312110010111  122346789999966999 


Q ss_pred             ccccChhhhHHHHHHHHHHc
Q 020104          309 RYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       309 ~~~~~~~e~i~~~~~~~~~~  328 (331)
                      .|.++++|+|+++++||+++
T Consensus       337 ~~~~~l~e~l~~~~~~~~~~  356 (357)
T 2x6t_A          337 KPFKTVAEGVTEYMAWLNRD  356 (357)
T ss_dssp             CCCCCHHHHHHHHHHHHC--
T ss_pred             CCCCCHHHHHHHHHHHHhhc
Confidence            78889999999999999653

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=100.00  E-value=4.4e-42  Score=298.94  Aligned_cols=293  Identities=18%  Similarity=0.186  Sum_probs=212.0

Q ss_pred             eEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC---
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG---   82 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~---   82 (331)
                      +|||||||||||++++++|+++| ++|++++|+..     .. ....+.       +++ +.+|+.|.+.+.+++++   
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~-----~~-~~~~~~-------~~~-~~~d~~~~~~~~~~~~~~~~   66 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKD-----GT-KFVNLV-------DLN-IADYMDKEDFLIQIMAGEEF   66 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSS-----GG-GGHHHH-------TSC-CSEEEEHHHHHHHHHTTCCC
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCC-----Cc-hhhhcC-------cce-eccccccHHHHHHHHhcccc
Confidence            59999999999999999999999 99999999862     11 111111       122 67899998889888875   


Q ss_pred             --ccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhh
Q 020104           83 --CTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRK  160 (331)
Q Consensus        83 --~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~  160 (331)
                        +|+|||+|+.......++. ..+++|+.++.+++++|++.+ + +|||+||.++|+  .....+++|+++        
T Consensus        67 ~~~d~vi~~a~~~~~~~~~~~-~~~~~n~~~~~~l~~a~~~~~-~-~~v~~SS~~v~g--~~~~~~~~E~~~--------  133 (310)
T 1eq2_A           67 GDVEAIFHEGACSSTTEWDGK-YMMDNNYQYSKELLHYCLERE-I-PFLYASSAATYG--GRTSDFIESREY--------  133 (310)
T ss_dssp             SSCCEEEECCSCCCTTCCCHH-HHHHHTHHHHHHHHHHHHHHT-C-CEEEEEEGGGGT--TCCSCBCSSGGG--------
T ss_pred             CCCcEEEECcccccCcccCHH-HHHHHHHHHHHHHHHHHHHcC-C-eEEEEeeHHHhC--CCCCCCCCCCCC--------
Confidence              9999999997665444555 899999999999999999998 7 999999999985  333457777763        


Q ss_pred             cCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCC--CCccHHHHHHHH-hCCCc-ccccCC--Cccce
Q 020104          161 LDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPK--FAGSVRSSLALI-LGNRE-EYGFLL--NTSMV  234 (331)
Q Consensus       161 ~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~--~~~~~~~~~~~~-~~~~~-~~~~~~--~~~~i  234 (331)
                       ..|.++|+.+|..+|.+++.++.+++++++++||+.+|||+....  ....+..+...+ .+... .++.+.  .++|+
T Consensus       134 -~~p~~~Y~~sK~~~e~~~~~~~~~~g~~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i  212 (310)
T 1eq2_A          134 -EKPLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFV  212 (310)
T ss_dssp             -CCCSSHHHHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------CBCEE
T ss_pred             -CCCCChhHHHHHHHHHHHHHHHHHcCCCEEEEeCCcEECcCCCCCCccchHHHHHHHHHHcCCCcEEecCCCcceEccE
Confidence             356779999999999999999888899999999999999986421  122333333333 33332 233332  46999


Q ss_pred             eHHHHHHHHHHhhcCCCCCceEEEe-ccccCHHHHHHHHHhhCCCCCCCCccCCccc--cCCcCcccCcHHHHHcCC-cc
Q 020104          235 HVDDVARAHIFLLEYPDAKGRYICS-SHTLTIQEMAEFLSAKYPEYPIPTVDSLAEI--EGYRAPGSSSKKLLDAGF-RY  310 (331)
Q Consensus       235 ~v~D~a~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~k~~~lg~-~~  310 (331)
                      |++|+|++++.+++++. +++||++ ++.+|+.|+++.+.+.+|...+.........  .......+|++|++.||| .|
T Consensus       213 ~v~Dva~~~~~~~~~~~-~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~  291 (310)
T 1eq2_A          213 YVGDVADVNLWFLENGV-SGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKP  291 (310)
T ss_dssp             EHHHHHHHHHHHHHHCC-CEEEEESCSCCBCHHHHHHHC---------------------CCCSCCBCCHHHHHTTCCCC
T ss_pred             EHHHHHHHHHHHHhcCC-CCeEEEeCCCccCHHHHHHHHHHHcCCCCceeCCCChhhhcccccccccchHHHHhcCCCCC
Confidence            99999999999998776 7899975 5789999999999998873211110000111  122346789999966999 78


Q ss_pred             ccChhhhHHHHHHHHHHc
Q 020104          311 NYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       311 ~~~~~e~i~~~~~~~~~~  328 (331)
                      .++++|+|+++++||+++
T Consensus       292 ~~~l~~~l~~~~~~~~~~  309 (310)
T 1eq2_A          292 FKTVAEGVTEYMAWLNRD  309 (310)
T ss_dssp             CCCHHHHHHHHHHHTC--
T ss_pred             CCCHHHHHHHHHHHHHhc
Confidence            889999999999999754

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=100.00  E-value=4.8e-41  Score=296.36  Aligned_cols=310  Identities=24%  Similarity=0.325  Sum_probs=227.3

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccc-cCCCCCCCcEEEE-eCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFL-KNLPGASERLRIF-HADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~D~~~~~~~~~~~~   81 (331)
                      ++|+|||||||||||++++++|+++|++|++++|+.     .....+... ....  ..+++++ .+|+.|.+++.++++
T Consensus        10 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~-----~~~~~~~~~~~~~~--~~~~~~~~~~D~~d~~~~~~~~~   82 (342)
T 1y1p_A           10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSA-----SKLANLQKRWDAKY--PGRFETAVVEDMLKQGAYDEVIK   82 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH-----HHHHHHHHHHHHHS--TTTEEEEECSCTTSTTTTTTTTT
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCc-----ccHHHHHHHhhccC--CCceEEEEecCCcChHHHHHHHc
Confidence            357899999999999999999999999999999986     222221111 0000  1468888 899999999999999


Q ss_pred             CccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHh-cCCccEEEEecccceeecCCC--CCCcccCCCCCChhhh
Q 020104           82 GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLK-SGTVKRVVYTSSNAAVFYNDK--DVDMMDETFWSDVDYI  158 (331)
Q Consensus        82 ~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~-~~~~~~~v~~SS~~~~~~~~~--~~~~~~E~~~~~~~~~  158 (331)
                      ++|+|||+|+..... .++. ..+++|+.++.+++++|++ .+ +++|||+||.++|+....  ...+++|+++......
T Consensus        83 ~~d~vih~A~~~~~~-~~~~-~~~~~n~~g~~~ll~~~~~~~~-~~~iv~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~  159 (342)
T 1y1p_A           83 GAAGVAHIASVVSFS-NKYD-EVVTPAIGGTLNALRAAAATPS-VKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESID  159 (342)
T ss_dssp             TCSEEEECCCCCSCC-SCHH-HHHHHHHHHHHHHHHHHHTCTT-CCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHH
T ss_pred             CCCEEEEeCCCCCCC-CCHH-HHHHHHHHHHHHHHHHHHhCCC-CcEEEEeccHHHhcCCCCCCCCcccCccccCchhhh
Confidence            999999999976543 3565 8999999999999999985 45 789999999998853322  1267888875432211


Q ss_pred             h-------hcCCCCchhHhhHHHHHHHHHHHHHHc--CCcEEEeccCceeCCCCCCCCCc-cHHHHH-HHHhCCCcc-cc
Q 020104          159 R-------KLDSWGKSYAISKTLTERAALEFAEEH--GLDLVTLIPSMVVGPFICPKFAG-SVRSSL-ALILGNREE-YG  226 (331)
Q Consensus       159 ~-------~~~~~~~~Y~~~K~~~e~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~-~~~~~~-~~~~~~~~~-~~  226 (331)
                      .       .+..|.+.|+.+|.++|.+++.++.++  +++++++||+.+||+........ .+..++ ....+.... ++
T Consensus       160 ~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (342)
T 1y1p_A          160 KAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALA  239 (342)
T ss_dssp             HHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHHH
T ss_pred             hhccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCCCCCCCCCccHHHHHHHHHcCCCccccc
Confidence            0       012345789999999999999998775  68999999999999986543222 333333 333444432 33


Q ss_pred             cCCCccceeHHHHHHHHHHhhcCCCCCc-eEEEeccccCHHHHHHHHHhhCCCCCCCCccCCccccCCcCcccCcHHH-H
Q 020104          227 FLLNTSMVHVDDVARAHIFLLEYPDAKG-RYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSSKKL-L  304 (331)
Q Consensus       227 ~~~~~~~i~v~D~a~~~~~~~~~~~~~~-~~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~  304 (331)
                      ....++|+|++|+|++++.++.++...+ .+.++++.+|+.|+++.+.+.+|...++.  .... .......+|++|+ +
T Consensus       240 ~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~~g~~~s~~e~~~~i~~~~~~~~~~~--~~~~-~~~~~~~~d~~k~~~  316 (342)
T 1y1p_A          240 LMPPQYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPA--DFPD-QGQDLSKFDTAPSLE  316 (342)
T ss_dssp             TCCSEEEEEHHHHHHHHHHHHHCTTCCSCEEEECCEEECHHHHHHHHHHHCTTSCCCC--CCCC-CCCCCCEECCHHHHH
T ss_pred             cCCcCCEeEHHHHHHHHHHHHcCcccCCceEEEeCCCCCHHHHHHHHHHHCCCccCCC--CCCc-cccccccCChHHHHH
Confidence            3334799999999999999998765434 55667778999999999999998433332  2111 1123467899999 7


Q ss_pred             HcCC---ccccChhhhHHHHHHHHH
Q 020104          305 DAGF---RYNYGIDEMFDEAIQCCK  326 (331)
Q Consensus       305 ~lg~---~~~~~~~e~i~~~~~~~~  326 (331)
                      .|||   .+.++++++|+++++||+
T Consensus       317 ~lg~~~~~~~~~l~~~l~~~~~~~~  341 (342)
T 1y1p_A          317 ILKSLGRPGWRSIEESIKDLVGSET  341 (342)
T ss_dssp             HHHHTTCCSCCCHHHHHHHHHCCSC
T ss_pred             HHhhcccCCcCCHHHHHHHHHHHhh
Confidence            7887   455599999999999874

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=100.00  E-value=3.9e-42  Score=297.85  Aligned_cols=278  Identities=14%  Similarity=0.041  Sum_probs=214.8

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC--c
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG--C   83 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~   83 (331)
                      |+|||||||||||++++++|+ +|++|++++|+.                        +.+.+|+.|.+++.+++++  +
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~------------------------~~~~~D~~d~~~~~~~~~~~~~   55 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-PVGNLIALDVHS------------------------KEFCGDFSNPKGVAETVRKLRP   55 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-TTSEEEEECTTC------------------------SSSCCCTTCHHHHHHHHHHHCC
T ss_pred             CeEEEECCCCHHHHHHHHHhh-cCCeEEEecccc------------------------ccccccCCCHHHHHHHHHhcCC
Confidence            489999999999999999999 899999999976                        1256899999999999976  9


Q ss_pred             cEEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhc
Q 020104           84 TGVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKL  161 (331)
Q Consensus        84 d~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~  161 (331)
                      |+|||+|+....  ...++. ..+++|+.++.+++++|++.+ + ||||+||.++|+  .....+++|+++         
T Consensus        56 d~vih~a~~~~~~~~~~~~~-~~~~~n~~~~~~l~~a~~~~~-~-~~v~~SS~~vy~--~~~~~~~~E~~~---------  121 (299)
T 1n2s_A           56 DVIVNAAAHTAVDKAESEPE-LAQLLNATSVEAIAKAANETG-A-WVVHYSTDYVFP--GTGDIPWQETDA---------  121 (299)
T ss_dssp             SEEEECCCCCCHHHHTTCHH-HHHHHHTHHHHHHHHHHTTTT-C-EEEEEEEGGGSC--CCTTCCBCTTSC---------
T ss_pred             CEEEECcccCCHhhhhcCHH-HHHHHHHHHHHHHHHHHHHcC-C-cEEEEecccEEe--CCCCCCCCCCCC---------
Confidence            999999997552  234555 889999999999999999988 6 899999999986  334467888875         


Q ss_pred             CCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHH-HhCCCcccccCCCccceeHHHHH
Q 020104          162 DSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLAL-ILGNREEYGFLLNTSMVHVDDVA  240 (331)
Q Consensus       162 ~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~v~D~a  240 (331)
                      ..|.+.|+.+|..+|++++.++    .+++++||+.+||++..    ..+..+... ..+.+........++|+|++|+|
T Consensus       122 ~~p~~~Y~~sK~~~E~~~~~~~----~~~~ilRp~~v~G~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva  193 (299)
T 1n2s_A          122 TSPLNVYGKTKLAGEKALQDNC----PKHLIFRTSWVYAGKGN----NFAKTMLRLAKERQTLSVINDQYGAPTGAELLA  193 (299)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHC----SSEEEEEECSEECSSSC----CHHHHHHHHHHHCSEEEEECSCEECCEEHHHHH
T ss_pred             CCCccHHHHHHHHHHHHHHHhC----CCeEEEeeeeecCCCcC----cHHHHHHHHHhcCCCEEeecCcccCCeeHHHHH
Confidence            3567799999999999998863    48999999999999754    233333332 33443322222337999999999


Q ss_pred             HHHHHhhcCC--C--CCceEEEe-ccccCHHHHHHHHHhhCCCC----CCCCcc-----CCccc-cCCcCcccCcHHH-H
Q 020104          241 RAHIFLLEYP--D--AKGRYICS-SHTLTIQEMAEFLSAKYPEY----PIPTVD-----SLAEI-EGYRAPGSSSKKL-L  304 (331)
Q Consensus       241 ~~~~~~~~~~--~--~~~~~~~~-~~~~s~~e~~~~i~~~~~~~----~~~~~~-----~~~~~-~~~~~~~~~~~k~-~  304 (331)
                      ++++.+++++  .  .+++||++ ++.+|++|+++.+.+.+|..    ..+...     .+... .......+|++|+ +
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~  273 (299)
T 1n2s_A          194 DCTAHAIRVALNKPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQR  273 (299)
T ss_dssp             HHHHHHHHHHHHCGGGCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHH
T ss_pred             HHHHHHHHHhccccccCceEEEeCCCCCCHHHHHHHHHHHhCCCccccccccccccccccccCcCCCCCceeeeHHHHHH
Confidence            9999999876  2  37799975 57899999999999876521    111100     01111 2234678999999 7


Q ss_pred             HcCCccccChhhhHHHHHHHHHHcCCC
Q 020104          305 DAGFRYNYGIDEMFDEAIQCCKEKGYL  331 (331)
Q Consensus       305 ~lg~~~~~~~~e~i~~~~~~~~~~~~~  331 (331)
                      .|||+|+ +++|+|+++++||+++..|
T Consensus       274 ~lG~~p~-~~~~~l~~~~~~~~~~~~i  299 (299)
T 1n2s_A          274 NFDLILP-QWELGVKRMLTEMFTTTTI  299 (299)
T ss_dssp             HHTCCCC-BHHHHHHHHHHHHHSCCC-
T ss_pred             hcCCCCC-CHHHHHHHHHHHHHhcCCC
Confidence            7999999 9999999999999987653

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=100.00  E-value=2.1e-41  Score=291.43  Aligned_cols=266  Identities=18%  Similarity=0.156  Sum_probs=205.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      |||+|||||| ||||++|+++|+++|++|++++|++     .....+.   .     .+++++.+|+.|.+     +.++
T Consensus         4 m~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~-----~~~~~~~---~-----~~~~~~~~D~~d~~-----~~~~   64 (286)
T 3ius_A            4 MTGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNP-----DQMEAIR---A-----SGAEPLLWPGEEPS-----LDGV   64 (286)
T ss_dssp             -CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCG-----GGHHHHH---H-----TTEEEEESSSSCCC-----CTTC
T ss_pred             CcCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcCh-----hhhhhHh---h-----CCCeEEEecccccc-----cCCC
Confidence            5689999998 9999999999999999999999987     2222221   1     47899999999955     7799


Q ss_pred             cEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHh--cCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhc
Q 020104           84 TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLK--SGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKL  161 (331)
Q Consensus        84 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~--~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~  161 (331)
                      |+|||+|+.....  ++          .+.++++++++  .+ +++|||+||.++|+  .....+++|+++         
T Consensus        65 d~vi~~a~~~~~~--~~----------~~~~l~~a~~~~~~~-~~~~v~~Ss~~vyg--~~~~~~~~E~~~---------  120 (286)
T 3ius_A           65 THLLISTAPDSGG--DP----------VLAALGDQIAARAAQ-FRWVGYLSTTAVYG--DHDGAWVDETTP---------  120 (286)
T ss_dssp             CEEEECCCCBTTB--CH----------HHHHHHHHHHHTGGG-CSEEEEEEEGGGGC--CCTTCEECTTSC---------
T ss_pred             CEEEECCCccccc--cH----------HHHHHHHHHHhhcCC-ceEEEEeecceecC--CCCCCCcCCCCC---------
Confidence            9999999965422  11          24688999988  56 89999999999995  445567888885         


Q ss_pred             CCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCC-ccceeHHHHH
Q 020104          162 DSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLN-TSMVHVDDVA  240 (331)
Q Consensus       162 ~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~D~a  240 (331)
                      ..|.+.|+.+|..+|++++.+   .+++++++||+.+||++... +.       ....+....+..++. ++|+|++|+|
T Consensus       121 ~~p~~~Y~~sK~~~E~~~~~~---~~~~~~ilRp~~v~G~~~~~-~~-------~~~~~~~~~~~~~~~~~~~i~v~Dva  189 (286)
T 3ius_A          121 LTPTAARGRWRVMAEQQWQAV---PNLPLHVFRLAGIYGPGRGP-FS-------KLGKGGIRRIIKPGQVFSRIHVEDIA  189 (286)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHS---TTCCEEEEEECEEEBTTBSS-ST-------TSSSSCCCEEECTTCCBCEEEHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHhh---cCCCEEEEeccceECCCchH-HH-------HHhcCCccccCCCCcccceEEHHHHH
Confidence            356789999999999999886   58999999999999998543 11       112344333333333 7999999999


Q ss_pred             HHHHHhhcCCCCCceEEEe-ccccCHHHHHHHHHhhCCCCCCCCccCCcc--c------cCCcCcccCcHHH-HHcCCcc
Q 020104          241 RAHIFLLEYPDAKGRYICS-SHTLTIQEMAEFLSAKYPEYPIPTVDSLAE--I------EGYRAPGSSSKKL-LDAGFRY  310 (331)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~k~-~~lg~~~  310 (331)
                      ++++.+++++..+++||++ ++.+|+.|+++.+.+.+|....... ....  .      .......+|++|+ +.|||+|
T Consensus       190 ~a~~~~~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p  268 (286)
T 3ius_A          190 QVLAASMARPDPGAVYNVCDDEPVPPQDVIAYAAELQGLPLPPAV-DFDKADLTPMARSFYSENKRVRNDRIKEELGVRL  268 (286)
T ss_dssp             HHHHHHHHSCCTTCEEEECCSCCBCHHHHHHHHHHHHTCCCCCEE-EGGGSCCCHHHHHTTSCCCEECCHHHHHTTCCCC
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCCccHHHHHHHHHHHcCCCCCccc-chhhhccChhHHHhhcCCceeehHHHHHHhCCCC
Confidence            9999999998877899975 6789999999999998873221110 1111  0      1125677899999 7799999


Q ss_pred             cc-ChhhhHHHHHHH
Q 020104          311 NY-GIDEMFDEAIQC  324 (331)
Q Consensus       311 ~~-~~~e~i~~~~~~  324 (331)
                      ++ +++|+|+++++.
T Consensus       269 ~~p~~~e~l~~~~~~  283 (286)
T 3ius_A          269 KYPNYRVGLEALQAD  283 (286)
T ss_dssp             SCSSHHHHHHHHHHT
T ss_pred             CcCCHHHHHHHHHHh
Confidence            99 799999999874

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=100.00  E-value=9.5e-41  Score=294.55  Aligned_cols=298  Identities=17%  Similarity=0.113  Sum_probs=223.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCC-------CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccH
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHG-------YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGF   76 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~   76 (331)
                      ++|+|||||||||||++++++|+++|       ++|++++|+..     ....        ....+++++.+|+.|++++
T Consensus        13 ~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~-----~~~~--------~~~~~~~~~~~Dl~d~~~~   79 (342)
T 2hrz_A           13 QGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQP-----EAPA--------GFSGAVDARAADLSAPGEA   79 (342)
T ss_dssp             SCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCC-----CCCT--------TCCSEEEEEECCTTSTTHH
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCC-----cccc--------ccCCceeEEEcCCCCHHHH
Confidence            45799999999999999999999999       89999999872     1111        0125788999999999999


Q ss_pred             HHHhc-CccEEEEecccCCC-CCCChhhHHHHHHHHHHHHHHHHHHhcC----CccEEEEecccceeecCCCCCCcccCC
Q 020104           77 DAAIA-GCTGVLHVATPVDF-EDKEPEEVITQRAINGTLGILKSCLKSG----TVKRVVYTSSNAAVFYNDKDVDMMDET  150 (331)
Q Consensus        77 ~~~~~-~~d~Vih~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~~~~E~  150 (331)
                      .++++ ++|+|||+|+.... ...++. ..+++|+.++.+++++|++.+    .+++|||+||..+|+.  ....+++|+
T Consensus        80 ~~~~~~~~d~vih~A~~~~~~~~~~~~-~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~~~~--~~~~~~~E~  156 (342)
T 2hrz_A           80 EKLVEARPDVIFHLAAIVSGEAELDFD-KGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGA--PLPYPIPDE  156 (342)
T ss_dssp             HHHHHTCCSEEEECCCCCHHHHHHCHH-HHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGCCS--SCCSSBCTT
T ss_pred             HHHHhcCCCEEEECCccCcccccccHH-HHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHhhCC--CCCCCcCCC
Confidence            99984 89999999996541 122444 789999999999999998864    2689999999999852  234578888


Q ss_pred             CCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeC-CCCCCCC-CccHHHHHH-HHhCCCccccc
Q 020104          151 FWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVG-PFICPKF-AGSVRSSLA-LILGNREEYGF  227 (331)
Q Consensus       151 ~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G-~~~~~~~-~~~~~~~~~-~~~~~~~~~~~  227 (331)
                      ++         ..|.++|+.+|.++|.+++.++.+++++.+++|++.+|| |+..... ...+..++. ...+....+..
T Consensus       157 ~~---------~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (342)
T 2hrz_A          157 FH---------TTPLTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLPV  227 (342)
T ss_dssp             CC---------CCCSSHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCCCSGGGHHHHHHHHHHTTCCEEECS
T ss_pred             CC---------CCCcchHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCcchhHHHHHHHHHHHhcCCCeeccC
Confidence            75         345678999999999999999887789999999999998 6543211 122333333 33444332222


Q ss_pred             C-CC-ccceeHHHHHHHHHHhhcCCC----CCceEEEeccccCHHHHHHHHHhhCCCCC---CCCccC--CccccCCcCc
Q 020104          228 L-LN-TSMVHVDDVARAHIFLLEYPD----AKGRYICSSHTLTIQEMAEFLSAKYPEYP---IPTVDS--LAEIEGYRAP  296 (331)
Q Consensus       228 ~-~~-~~~i~v~D~a~~~~~~~~~~~----~~~~~~~~~~~~s~~e~~~~i~~~~~~~~---~~~~~~--~~~~~~~~~~  296 (331)
                      . .. .+++|++|+|++++.+++.+.    .+++||++++.+|+.|+++.+.+.+|...   +.....  ..........
T Consensus       228 ~~~~~~~~~~v~Dva~~~~~~~~~~~~~~~~~~~~ni~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  307 (342)
T 2hrz_A          228 PESIRHWHASPRSAVGFLIHGAMIDVEKVGPRRNLSMPGLSATVGEQIEALRKVAGEKAVALIRREPNEMIMRMCEGWAP  307 (342)
T ss_dssp             CTTCEEEEECHHHHHHHHHHHHHSCHHHHCSCCEEECCCEEEEHHHHHHHHHHHHCHHHHTTEEECCCHHHHHHHTTSCC
T ss_pred             CCccceeeEehHHHHHHHHHHHhccccccCCccEEEcCCCCCCHHHHHHHHHHHcCcccccceeeccCcchhhhhccccc
Confidence            2 22 578999999999999998764    35789987788999999999999877221   111000  0011112234


Q ss_pred             ccCcHHHHHcCCccccChhhhHHHHHHHHH
Q 020104          297 GSSSKKLLDAGFRYNYGIDEMFDEAIQCCK  326 (331)
Q Consensus       297 ~~~~~k~~~lg~~~~~~~~e~i~~~~~~~~  326 (331)
                      .+|++|++.|||+|+++++|+|+++++|++
T Consensus       308 ~~d~~k~~~lG~~p~~~l~e~l~~~~~~~~  337 (342)
T 2hrz_A          308 GFEAKRARELGFTAESSFEEIIQVHIEDEL  337 (342)
T ss_dssp             CBCCHHHHHTTCCCCSSHHHHHHHHHHHHS
T ss_pred             ccChHHHHHcCCCCCCCHHHHHHHHHHHhc
Confidence            689999944999999899999999999997

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=100.00  E-value=5.7e-41  Score=292.63  Aligned_cols=283  Identities=17%  Similarity=0.130  Sum_probs=191.5

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG--   82 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--   82 (331)
                      +|+|||||||||||++++++|+++|++|++++|+..     .              ++  ++.+|+.|++++.+++++  
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-----~--------------~~--~~~~Dl~d~~~~~~~~~~~~   60 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRA-----R--------------PK--FEQVNLLDSNAVHHIIHDFQ   60 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC---------------------------------------CHHHHHHHC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCC-----C--------------CC--eEEecCCCHHHHHHHHHhhC
Confidence            579999999999999999999999999999998762     1              12  678999999999999874  


Q ss_pred             ccEEEEecccCCCC--CCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhh
Q 020104           83 CTGVLHVATPVDFE--DKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRK  160 (331)
Q Consensus        83 ~d~Vih~a~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~  160 (331)
                      +|+|||+|+.....  ..++. ..+++|+.++.+++++|++.+ + +|||+||.++|+.   ...+++|+++        
T Consensus        61 ~d~vih~A~~~~~~~~~~~~~-~~~~~n~~~~~~l~~a~~~~~-~-~~v~~SS~~v~~~---~~~~~~E~~~--------  126 (315)
T 2ydy_A           61 PHVIVHCAAERRPDVVENQPD-AASQLNVDASGNLAKEAAAVG-A-FLIYISSDYVFDG---TNPPYREEDI--------  126 (315)
T ss_dssp             CSEEEECC--------------------CHHHHHHHHHHHHHT-C-EEEEEEEGGGSCS---SSCSBCTTSC--------
T ss_pred             CCEEEECCcccChhhhhcCHH-HHHHHHHHHHHHHHHHHHHcC-C-eEEEEchHHHcCC---CCCCCCCCCC--------
Confidence            99999999875422  23444 889999999999999999988 6 9999999999863   4567888875        


Q ss_pred             cCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHH--hCCCcccccCCCccceeHHH
Q 020104          161 LDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALI--LGNREEYGFLLNTSMVHVDD  238 (331)
Q Consensus       161 ~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~v~D  238 (331)
                       ..|.+.|+.+|..+|.+++.+    +++++++||+.+||+...+.. ..+..+....  .+..........++++|++|
T Consensus       127 -~~~~~~Y~~sK~~~e~~~~~~----~~~~~~lR~~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D  200 (315)
T 2ydy_A          127 -PAPLNLYGKTKLDGEKAVLEN----NLGAAVLRIPILYGEVEKLEE-SAVTVMFDKVQFSNKSANMDHWQQRFPTHVKD  200 (315)
T ss_dssp             -CCCCSHHHHHHHHHHHHHHHH----CTTCEEEEECSEECSCSSGGG-STTGGGHHHHHCCSSCEEEECSSBBCCEEHHH
T ss_pred             -CCCcCHHHHHHHHHHHHHHHh----CCCeEEEeeeeeeCCCCcccc-cHHHHHHHHHHhcCCCeeeccCceECcEEHHH
Confidence             345778999999999999875    578899999999999865210 1111122222  23333222223379999999


Q ss_pred             HHHHHHHhhcCC----CCCceEEEe-ccccCHHHHHHHHHhhCCCCCC--CCccCCc--cccCCcCcccCcHHHHHcCCc
Q 020104          239 VARAHIFLLEYP----DAKGRYICS-SHTLTIQEMAEFLSAKYPEYPI--PTVDSLA--EIEGYRAPGSSSKKLLDAGFR  309 (331)
Q Consensus       239 ~a~~~~~~~~~~----~~~~~~~~~-~~~~s~~e~~~~i~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~k~~~lg~~  309 (331)
                      +|++++.++.++    ..+++||++ ++.+|+.|+++.+.+.+|....  .......  .........+|++|++.+||+
T Consensus       201 va~a~~~~~~~~~~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~G~~  280 (315)
T 2ydy_A          201 VATVCRQLAEKRMLDPSIKGTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVLGAQRPRNAQLDCSKLETLGIG  280 (315)
T ss_dssp             HHHHHHHHHHHHHTCTTCCEEEECCCSCCBCHHHHHHHHHHHTTCCCTTEEEECSCCCSSSCCCSBCCBCCHHHHHTTCC
T ss_pred             HHHHHHHHHHhhccccCCCCeEEEcCCCcccHHHHHHHHHHHhCCChhheeccccccccccCCCcccccchHHHHhcCCC
Confidence            999999998753    457789965 5789999999999998883211  0000001  112234678999999444999


Q ss_pred             cccChhhhHHHHHHHHHHc
Q 020104          310 YNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       310 ~~~~~~e~i~~~~~~~~~~  328 (331)
                      |.++++++|+++++||+++
T Consensus       281 p~~~~~~~l~~~~~~~~~~  299 (315)
T 2ydy_A          281 QRTPFRIGIKESLWPFLID  299 (315)
T ss_dssp             CCCCHHHHHHHHHGGGCC-
T ss_pred             CCCCHHHHHHHHHHHHccc
Confidence            9999999999999998654

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=100.00  E-value=2.8e-40  Score=317.29  Aligned_cols=308  Identities=16%  Similarity=0.176  Sum_probs=225.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      ++|+|||||||||||++|+++|+++|++|++++|+..    ........+..+.  ..+++++.+|+.|++++.++++  
T Consensus        10 ~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~----~~~~~~~~l~~~~--~~~v~~v~~Dl~d~~~l~~~~~~~   83 (699)
T 1z45_A           10 TSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSN----STYDSVARLEVLT--KHHIPFYEVDLCDRKGLEKVFKEY   83 (699)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS----CCTHHHHHHHHHH--TSCCCEEECCTTCHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCc----chHHHHHHHhhcc--CCceEEEEcCCCCHHHHHHHHHhC
Confidence            4578999999999999999999999999999999762    1111111111110  1467889999999999999998  


Q ss_pred             CccEEEEecccCCCC--CCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCC--CCCCcccCCCCCChhh
Q 020104           82 GCTGVLHVATPVDFE--DKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYND--KDVDMMDETFWSDVDY  157 (331)
Q Consensus        82 ~~d~Vih~a~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~--~~~~~~~E~~~~~~~~  157 (331)
                      ++|+|||+|+.....  ..++. +.+++|+.++.+++++|++.+ +++|||+||.++|+...  ....+++|+++     
T Consensus        84 ~~D~Vih~A~~~~~~~~~~~~~-~~~~~Nv~gt~~ll~a~~~~~-~~~iV~~SS~~vyg~~~~~~~~~~~~E~~~-----  156 (699)
T 1z45_A           84 KIDSVIHFAGLKAVGESTQIPL-RYYHNNILGTVVLLELMQQYN-VSKFVFSSSATVYGDATRFPNMIPIPEECP-----  156 (699)
T ss_dssp             CCCEEEECCSCCCHHHHHHSHH-HHHHHHHHHHHHHHHHHHHHT-CCEEEEEEEGGGGCCGGGSTTCCSBCTTSC-----
T ss_pred             CCCEEEECCcccCcCccccCHH-HHHHHHHHHHHHHHHHHHHcC-CCEEEEECcHHHhCCCccccccCCccccCC-----
Confidence            899999999975421  12343 789999999999999999988 89999999999986321  12346677764     


Q ss_pred             hhhcCCCCchhHhhHHHHHHHHHHHHHH--cCCcEEEeccCceeCCCCCCC-------CC-ccHHHHHHHHhCC--Cc-c
Q 020104          158 IRKLDSWGKSYAISKTLTERAALEFAEE--HGLDLVTLIPSMVVGPFICPK-------FA-GSVRSSLALILGN--RE-E  224 (331)
Q Consensus       158 ~~~~~~~~~~Y~~~K~~~e~~~~~~~~~--~~~~~~ilRp~~v~G~~~~~~-------~~-~~~~~~~~~~~~~--~~-~  224 (331)
                          ..|.+.|+.+|.++|++++.++.+  .+++++++||+++||++....       .. ..+..+.....+.  +. .
T Consensus       157 ----~~p~~~Y~~sK~~~E~~~~~~~~~~~~g~~~~ilR~~~vyG~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (699)
T 1z45_A          157 ----LGPTNPYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYI  232 (699)
T ss_dssp             ----CCCCSHHHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCC
T ss_pred             ----CCCCChHHHHHHHHHHHHHHHHHhccCCCcEEEEEeccccCCCcccccccccccchhHHHHHHHHHHhcCCCceEE
Confidence                345678999999999999998877  689999999999999864321       11 2233333334332  22 2


Q ss_pred             cc------cCCC-ccceeHHHHHHHHHHhhcCC-------CCCceEEE-eccccCHHHHHHHHHhhCCCCCCCCccCCcc
Q 020104          225 YG------FLLN-TSMVHVDDVARAHIFLLEYP-------DAKGRYIC-SSHTLTIQEMAEFLSAKYPEYPIPTVDSLAE  289 (331)
Q Consensus       225 ~~------~~~~-~~~i~v~D~a~~~~~~~~~~-------~~~~~~~~-~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~  289 (331)
                      ++      .+.. ++|+|++|+|++++.+++..       ..+++||+ +++.+|+.|+++.+.+.++.. ++.......
T Consensus       233 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~a~~~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~-~~~~~~~~~  311 (699)
T 1z45_A          233 FGDDYDSRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGID-LPYKVTGRR  311 (699)
T ss_dssp             C------CCSSCEECEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCC-CCC------
T ss_pred             eCCcccCCCCCeeEeeEEHHHHHHHHHHHHhhhhccccccCCceEEEECCCCCCcHHHHHHHHHHHhCCC-CCceecCCC
Confidence            22      2333 79999999999999988642       12468987 567899999999999988732 221001011


Q ss_pred             ccCCcCcccCcHHH-HHcCCccccChhhhHHHHHHHHHHcC
Q 020104          290 IEGYRAPGSSSKKL-LDAGFRYNYGIDEMFDEAIQCCKEKG  329 (331)
Q Consensus       290 ~~~~~~~~~~~~k~-~~lg~~~~~~~~e~i~~~~~~~~~~~  329 (331)
                      ........+|++|+ +.|||+|+++++|+|+++++||++++
T Consensus       312 ~~~~~~~~~d~~ka~~~LG~~p~~~l~egl~~~~~w~~~~~  352 (699)
T 1z45_A          312 AGDVLNLTAKPDRAKRELKWQTELQVEDSCKDLWKWTTENP  352 (699)
T ss_dssp             ---CCCCCBCCHHHHHHTCCCCCCCHHHHHHHHHHHHHHCT
T ss_pred             CCccccccCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhCC
Confidence            12334678999999 88999999999999999999998875

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=100.00  E-value=9.2e-41  Score=288.24  Aligned_cols=268  Identities=12%  Similarity=0.063  Sum_probs=209.9

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--C
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--G   82 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~   82 (331)
                      .|+|||||||||||++++++|+++|++|++++|+.                            +|+.|.+++.++++  +
T Consensus        12 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~----------------------------~Dl~d~~~~~~~~~~~~   63 (292)
T 1vl0_A           12 HMKILITGANGQLGREIQKQLKGKNVEVIPTDVQD----------------------------LDITNVLAVNKFFNEKK   63 (292)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT----------------------------CCTTCHHHHHHHHHHHC
T ss_pred             cceEEEECCCChHHHHHHHHHHhCCCeEEeccCcc----------------------------CCCCCHHHHHHHHHhcC
Confidence            47899999999999999999999999999998863                            68999999999998  7


Q ss_pred             ccEEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhh
Q 020104           83 CTGVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRK  160 (331)
Q Consensus        83 ~d~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~  160 (331)
                      +|+|||+|+....  ...++. ..+++|+.++.+++++|++.+ + +|||+||.++|+  .....+++|+++        
T Consensus        64 ~d~vih~A~~~~~~~~~~~~~-~~~~~nv~~~~~l~~a~~~~~-~-~iv~~SS~~v~~--~~~~~~~~E~~~--------  130 (292)
T 1vl0_A           64 PNVVINCAAHTAVDKCEEQYD-LAYKINAIGPKNLAAAAYSVG-A-EIVQISTDYVFD--GEAKEPITEFDE--------  130 (292)
T ss_dssp             CSEEEECCCCCCHHHHHHCHH-HHHHHHTHHHHHHHHHHHHHT-C-EEEEEEEGGGSC--SCCSSCBCTTSC--------
T ss_pred             CCEEEECCccCCHHHHhcCHH-HHHHHHHHHHHHHHHHHHHcC-C-eEEEechHHeEC--CCCCCCCCCCCC--------
Confidence            9999999997542  123444 889999999999999999998 7 999999999985  334467888875        


Q ss_pred             cCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHH-HhCCCcccccCCCccceeHHHH
Q 020104          161 LDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLAL-ILGNREEYGFLLNTSMVHVDDV  239 (331)
Q Consensus       161 ~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~v~D~  239 (331)
                       ..|.+.|+.+|..+|.+++.++    .+++++||+.+||+ ..    ..+..+... ..+..........++++|++|+
T Consensus       131 -~~~~~~Y~~sK~~~E~~~~~~~----~~~~~lR~~~v~G~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dv  200 (292)
T 1vl0_A          131 -VNPQSAYGKTKLEGENFVKALN----PKYYIVRTAWLYGD-GN----NFVKTMINLGKTHDELKVVHDQVGTPTSTVDL  200 (292)
T ss_dssp             -CCCCSHHHHHHHHHHHHHHHHC----SSEEEEEECSEESS-SS----CHHHHHHHHHHHCSEEEEESSCEECCEEHHHH
T ss_pred             -CCCccHHHHHHHHHHHHHHhhC----CCeEEEeeeeeeCC-Cc----ChHHHHHHHHhcCCcEEeecCeeeCCccHHHH
Confidence             3456789999999999998853    57999999999999 22    223333332 2343322222223799999999


Q ss_pred             HHHHHHhhcCCCCCceEEEe-ccccCHHHHHHHHHhhCCCC-C---CCCccCCcc-ccCCcCcccCcHHH-HHcCCcccc
Q 020104          240 ARAHIFLLEYPDAKGRYICS-SHTLTIQEMAEFLSAKYPEY-P---IPTVDSLAE-IEGYRAPGSSSKKL-LDAGFRYNY  312 (331)
Q Consensus       240 a~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~i~~~~~~~-~---~~~~~~~~~-~~~~~~~~~~~~k~-~~lg~~~~~  312 (331)
                      |++++.+++++ .+++||++ ++.+|+.|+++.+.+.+|.. .   ++.. .+.. ........+|++|+ +.|||+|+ 
T Consensus       201 a~~~~~~~~~~-~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~d~~k~~~~lG~~p~-  277 (292)
T 1vl0_A          201 ARVVLKVIDEK-NYGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTE-EFPRPAKRPKYSVLRNYMLELTTGDITR-  277 (292)
T ss_dssp             HHHHHHHHHHT-CCEEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECST-TSCCSSCCCSBCCBCCHHHHHTTCCCCC-
T ss_pred             HHHHHHHHhcC-CCcEEEecCCCCccHHHHHHHHHHHhCCCCceeecccc-ccCcccCCCccccccHHHHHHHcCCCCC-
Confidence            99999999876 67899975 57899999999999988732 1   1210 1111 12234577999999 77999999 


Q ss_pred             ChhhhHHHHHHHHH
Q 020104          313 GIDEMFDEAIQCCK  326 (331)
Q Consensus       313 ~~~e~i~~~~~~~~  326 (331)
                      +++++|+++++||+
T Consensus       278 ~~~~~l~~~~~~~~  291 (292)
T 1vl0_A          278 EWKESLKEYIDLLQ  291 (292)
T ss_dssp             BHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHhc
Confidence            99999999999985

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=100.00  E-value=9.1e-40  Score=311.36  Aligned_cols=307  Identities=18%  Similarity=0.232  Sum_probs=229.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHC-CCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCcc-HHHHhc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDH-GYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDG-FDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~~~~   81 (331)
                      ++|+|||||||||||++++++|++. |++|++++|+..     ....+   ..    ..+++++.+|+.|.++ +.++++
T Consensus       314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~-----~~~~~---~~----~~~v~~v~~Dl~d~~~~~~~~~~  381 (660)
T 1z7e_A          314 RRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD-----AISRF---LN----HPHFHFVEGDISIHSEWIEYHVK  381 (660)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCT-----TTGGG---TT----CTTEEEEECCTTTCHHHHHHHHH
T ss_pred             cCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCch-----hhhhh---cc----CCceEEEECCCCCcHHHHHHhhc
Confidence            4578999999999999999999998 899999999872     22111   11    2578999999999875 777888


Q ss_pred             CccEEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhh
Q 020104           82 GCTGVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIR  159 (331)
Q Consensus        82 ~~d~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~  159 (331)
                      ++|+|||+|+....  ...++. ..+++|+.++.+++++|++.+  ++|||+||.++|+  .....+++|+++...  ..
T Consensus       382 ~~D~Vih~Aa~~~~~~~~~~~~-~~~~~Nv~gt~~ll~aa~~~~--~r~V~~SS~~vyg--~~~~~~~~E~~~~~~--~~  454 (660)
T 1z7e_A          382 KCDVVLPLVAIATPIEYTRNPL-RVFELDFEENLRIIRYCVKYR--KRIIFPSTSEVYG--MCSDKYFDEDHSNLI--VG  454 (660)
T ss_dssp             HCSEEEECCCCCCTHHHHHSHH-HHHHHHTHHHHHHHHHHHHTT--CEEEEECCGGGGB--TCCSSSBCTTTCCEE--EC
T ss_pred             CCCEEEECceecCccccccCHH-HHHHhhhHHHHHHHHHHHHhC--CEEEEEecHHHcC--CCCCcccCCCccccc--cC
Confidence            99999999996542  123444 789999999999999999987  7999999999986  334457788875210  01


Q ss_pred             hcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCC------CCccHHHHH-HHHhCCCcc-cccCCC-
Q 020104          160 KLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPK------FAGSVRSSL-ALILGNREE-YGFLLN-  230 (331)
Q Consensus       160 ~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~------~~~~~~~~~-~~~~~~~~~-~~~~~~-  230 (331)
                      +...|.+.|+.+|.++|.+++.++.+++++++++||+++||++....      ....+..+. ....+.+.. ++.+.. 
T Consensus       455 p~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~  534 (660)
T 1z7e_A          455 PVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQK  534 (660)
T ss_dssp             CTTCTTHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEESTTSSCHHHHTTTCSCHHHHHHHHHHHTCCEEEEGGGCCE
T ss_pred             cccCCCCCcHHHHHHHHHHHHHHHHHcCCCEEEECCCcccCCCccccccccccccchHHHHHHHHHcCCCcEEeCCCCeE
Confidence            12245778999999999999999888899999999999999986420      112233333 333455432 333333 


Q ss_pred             ccceeHHHHHHHHHHhhcCCC---CCceEEEec-c-ccCHHHHHHHHHhhCCCC----CCCCccCC---------c-ccc
Q 020104          231 TSMVHVDDVARAHIFLLEYPD---AKGRYICSS-H-TLTIQEMAEFLSAKYPEY----PIPTVDSL---------A-EIE  291 (331)
Q Consensus       231 ~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~-~-~~s~~e~~~~i~~~~~~~----~~~~~~~~---------~-~~~  291 (331)
                      ++|+|++|+|++++.+++++.   .+++||+++ + .+|+.|+++.+.+.+|..    .+|.....         . ...
T Consensus       535 ~~~i~v~Dva~ai~~~l~~~~~~~~g~~~ni~~~~~~~s~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~  614 (660)
T 1z7e_A          535 RCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQ  614 (660)
T ss_dssp             EECEEHHHHHHHHHHHHHCGGGTTTTEEEEECCGGGEEEHHHHHHHHHHHHHHCTTGGGSCCCCCEEEECTHHHHCTTCC
T ss_pred             EEEEEHHHHHHHHHHHHhCccccCCCeEEEECCCCCCcCHHHHHHHHHHHhcCCCcccccCccccccchhcccccccccc
Confidence            799999999999999998764   466899865 4 799999999999876521    22221000         0 001


Q ss_pred             CCcCcccCcHHH-HHcCCccccChhhhHHHHHHHHHHcC
Q 020104          292 GYRAPGSSSKKL-LDAGFRYNYGIDEMFDEAIQCCKEKG  329 (331)
Q Consensus       292 ~~~~~~~~~~k~-~~lg~~~~~~~~e~i~~~~~~~~~~~  329 (331)
                      ......+|++|+ +.|||+|+++++++|+++++||+++.
T Consensus       615 ~~~~~~~d~~ka~~~LG~~p~~~l~egl~~~i~~~~~~~  653 (660)
T 1z7e_A          615 DVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTV  653 (660)
T ss_dssp             CCSCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHTTS
T ss_pred             chhhcccCHHHHHHhcCCCccCcHHHHHHHHHHHHHhhc
Confidence            234567899999 88999999899999999999998765

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=100.00  E-value=2e-39  Score=288.50  Aligned_cols=295  Identities=16%  Similarity=0.076  Sum_probs=222.1

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCC-----CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHG-----YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g-----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |+|||||||||||++++++|+++|     ++|++++|+..     ...    +     ...+++++.+|+.|.+++.+++
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~-----~~~----~-----~~~~~~~~~~Dl~d~~~~~~~~   67 (364)
T 2v6g_A            2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTR-----PAW----H-----EDNPINYVQCDISDPDDSQAKL   67 (364)
T ss_dssp             EEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCC-----CSC----C-----CSSCCEEEECCTTSHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCC-----ccc----c-----ccCceEEEEeecCCHHHHHHHH
Confidence            689999999999999999999999     99999999872     211    1     1247899999999999999999


Q ss_pred             cC---ccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhc--CCccEEE-------EecccceeecCCCCCCccc
Q 020104           81 AG---CTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKS--GTVKRVV-------YTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        81 ~~---~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~~v-------~~SS~~~~~~~~~~~~~~~  148 (331)
                      ++   +|+|||+|+...   .++. ..+++|+.++.+++++|++.  + +++||       |+||.++|+.......+++
T Consensus        68 ~~~~~~d~vih~a~~~~---~~~~-~~~~~n~~~~~~l~~a~~~~~~~-~~~~v~~~g~~i~~Ss~~vyg~~~~~~~~~~  142 (364)
T 2v6g_A           68 SPLTDVTHVFYVTWANR---STEQ-ENCEANSKMFRNVLDAVIPNCPN-LKHISLQTGRKHYMGPFESYGKIESHDPPYT  142 (364)
T ss_dssp             TTCTTCCEEEECCCCCC---SSHH-HHHHHHHHHHHHHHHHHTTTCTT-CCEEEEECCTHHHHCCGGGTTTSCCCCSSBC
T ss_pred             hcCCCCCEEEECCCCCc---chHH-HHHHHhHHHHHHHHHHHHHhccc-cceEEeccCceEEEechhhccccccCCCCCC
Confidence            87   999999999753   3454 89999999999999999998  6 88998       8999999864333456788


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcC-CcEEEeccCceeCCCCCCCCCccHHH-HHHHH---hCCCc
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHG-LDLVTLIPSMVVGPFICPKFAGSVRS-SLALI---LGNRE  223 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~-~~~~~---~~~~~  223 (331)
                      |+++.        .++.+.|    ..+|+.++.++++++ ++++++||+.+|||+........... +...+   .+.+.
T Consensus       143 E~~~~--------~~~~~~y----~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~g~~~  210 (364)
T 2v6g_A          143 EDLPR--------LKYMNFY----YDLEDIMLEEVEKKEGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVL  210 (364)
T ss_dssp             TTSCC--------CSSCCHH----HHHHHHHHHHHTTSTTCEEEEEEESSEECCCTTCSSCHHHHHHHHHHHHHHHTCCB
T ss_pred             ccccC--------Cccchhh----HHHHHHHHHHhhcCCCceEEEECCCceeCCCCCcccchHHHHHHHHHHHHhcCCce
Confidence            88752        1224567    458999998887676 99999999999999876322222222 12222   35443


Q ss_pred             c-cccC----CCccceeHHHHHHHHHHhhcCCC-CCceEEEe-ccccCHHHHHHHHHhhCCCC------CCCCcc-----
Q 020104          224 E-YGFL----LNTSMVHVDDVARAHIFLLEYPD-AKGRYICS-SHTLTIQEMAEFLSAKYPEY------PIPTVD-----  285 (331)
Q Consensus       224 ~-~~~~----~~~~~i~v~D~a~~~~~~~~~~~-~~~~~~~~-~~~~s~~e~~~~i~~~~~~~------~~~~~~-----  285 (331)
                      . ++.+    ...+++|++|+|++++.+++++. .+++||++ ++.+|+.|+++.+.+.+|..      .+|...     
T Consensus       211 ~~~g~~~~~~~~~~~~~v~Dva~a~~~~~~~~~~~g~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~  290 (364)
T 2v6g_A          211 RFTGCKAAWDGYSDCSDADLIAEHHIWAAVDPYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYEEGVDLKLQDLMK  290 (364)
T ss_dssp             CCCSCHHHHHSCBCCEEHHHHHHHHHHHHHCGGGTTEEEEECCSCCBCHHHHHHHHHHHHTCCBCCCCTTCCCCHHHHTT
T ss_pred             ecCCCcccccccCCCCcHHHHHHHHHHHHhCCCCCCceEEecCCCcCCHHHHHHHHHHHhCCCCCCCCCCCCccHHHHHh
Confidence            3 3332    12588999999999999998775 45689975 46799999999999988721      222210     


Q ss_pred             -----------C---Cccc-cCC-----------cC-cccCcHHHHHcCCccccChhhhHHHHHHHHHHcCCC
Q 020104          286 -----------S---LAEI-EGY-----------RA-PGSSSKKLLDAGFRYNYGIDEMFDEAIQCCKEKGYL  331 (331)
Q Consensus       286 -----------~---~~~~-~~~-----------~~-~~~~~~k~~~lg~~~~~~~~e~i~~~~~~~~~~~~~  331 (331)
                                 .   .... ...           .. ..+|++|++.|||+|.++++|+++++++||+++|+|
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~~~e~l~~~~~~~~~~g~l  363 (364)
T 2v6g_A          291 GKEPVWEEIVRENGLTPTKLKDVGIWWFGDVILGNECFLDSMNKSKEHGFLGFRNSKNAFISWIDKAKAYKIV  363 (364)
T ss_dssp             TCHHHHHHHHHHTTCCCCCHHHHCCHHHHHHHHTSCCCCBCCHHHHHTTCCCCCCHHHHHHHHHHHHHHTTSC
T ss_pred             hhHHHHHHHHHHhCCCccccccccccchhhhccccchhhcchHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC
Confidence                       0   0000 000           33 578999994499999889999999999999999875

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=100.00  E-value=8.4e-39  Score=276.70  Aligned_cols=272  Identities=20%  Similarity=0.171  Sum_probs=200.5

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCccE
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTG   85 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~   85 (331)
                      |||||||||||||++|+++|+++||+|++++|++.     .              ..   +..|    +...+.++++|+
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~-----~--------------~~---~~~~----~~~~~~l~~~d~   54 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG-----P--------------GR---ITWD----ELAASGLPSCDA   54 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC-----T--------------TE---EEHH----HHHHHCCCSCSE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC-----c--------------Ce---eecc----hhhHhhccCCCE
Confidence            58999999999999999999999999999999871     1              11   1111    122345678999


Q ss_pred             EEEecccCCC-----CCCChhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCCCCcccCCCCCChhhhh
Q 020104           86 VLHVATPVDF-----EDKEPEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIR  159 (331)
Q Consensus        86 Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~  159 (331)
                      |||+|+....     +.......+.+.|+.++.+|++++++.+ ...+||+.||.++|+  +....+.+|+++       
T Consensus        55 vihla~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg--~~~~~~~~E~~p-------  125 (298)
T 4b4o_A           55 AVNLAGENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQ--PSLTAEYDEDSP-------  125 (298)
T ss_dssp             EEECCCCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSC--CCSSCCBCTTCC-------
T ss_pred             EEEeccCcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeeeeec--CCCCCcccccCC-------
Confidence            9999974221     1112234688899999999999999876 134689999998885  556678888875       


Q ss_pred             hcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHH-HHhCCCcccccCCC-ccceeHH
Q 020104          160 KLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLA-LILGNREEYGFLLN-TSMVHVD  237 (331)
Q Consensus       160 ~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~i~v~  237 (331)
                        ..|.+.|+..|...|....  ....+++++++||+.+|||+..     .+..+.. ...+....++.+.+ ++|||++
T Consensus       126 --~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~r~~~v~g~~~~-----~~~~~~~~~~~~~~~~~g~g~~~~~~ihv~  196 (298)
T 4b4o_A          126 --GGDFDFFSNLVTKWEAAAR--LPGDSTRQVVVRSGVVLGRGGG-----AMGHMLLPFRLGLGGPIGSGHQFFPWIHIG  196 (298)
T ss_dssp             --CSCSSHHHHHHHHHHHHHC--CSSSSSEEEEEEECEEECTTSH-----HHHHHHHHHHTTCCCCBTTSCSBCCEEEHH
T ss_pred             --ccccchhHHHHHHHHHHHH--hhccCCceeeeeeeeEEcCCCC-----chhHHHHHHhcCCcceecccCceeecCcHH
Confidence              3445678877777776432  2345899999999999999732     2333332 33455566666666 7999999


Q ss_pred             HHHHHHHHhhcCCCCCceEEE-eccccCHHHHHHHHHhhCCC---CCCCCccCCccc-c-------CCcCcccCcHHHHH
Q 020104          238 DVARAHIFLLEYPDAKGRYIC-SSHTLTIQEMAEFLSAKYPE---YPIPTVDSLAEI-E-------GYRAPGSSSKKLLD  305 (331)
Q Consensus       238 D~a~~~~~~~~~~~~~~~~~~-~~~~~s~~e~~~~i~~~~~~---~~~~~~~~~~~~-~-------~~~~~~~~~~k~~~  305 (331)
                      |+|++++++++++...|+||+ +++++|++|+++.+++.++.   .++|.  ...+. .       ......++++|+++
T Consensus       197 Dva~a~~~~~~~~~~~g~yn~~~~~~~t~~e~~~~ia~~lgrp~~~pvP~--~~~~~~~g~~~~~~~l~~~rv~~~kl~~  274 (298)
T 4b4o_A          197 DLAGILTHALEANHVHGVLNGVAPSSATNAEFAQTFGAALGRRAFIPLPS--AVVQAVFGRQRAIMLLEGQKVIPRRTLA  274 (298)
T ss_dssp             HHHHHHHHHHHCTTCCEEEEESCSCCCBHHHHHHHHHHHHTCCCCCCBCH--HHHHHHHCHHHHHHHHCCCCBCCHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCeEEEECCCccCHHHHHHHHHHHhCcCCcccCCH--HHHHHHhcchhHHHhhCCCEEcHHHHHH
Confidence            999999999999888899996 56889999999999998873   22222  11111 0       11345688999988


Q ss_pred             cCCcccc-ChhhhHHHHHH
Q 020104          306 AGFRYNY-GIDEMFDEAIQ  323 (331)
Q Consensus       306 lg~~~~~-~~~e~i~~~~~  323 (331)
                      +||+++| +++++++++++
T Consensus       275 ~Gf~f~yp~l~~al~~l~~  293 (298)
T 4b4o_A          275 TGYQYSFPELGAALKEIAE  293 (298)
T ss_dssp             TTCCCSCCSHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHH
Confidence            9999999 69999999887

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=100.00  E-value=5.6e-38  Score=290.71  Aligned_cols=276  Identities=16%  Similarity=0.144  Sum_probs=201.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      +|+|||||||||||++|++.|++.|++|++++|+..     .                .+.+.+|+.+.  +.+++.++|
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~-----~----------------~~~v~~d~~~~--~~~~l~~~D  203 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEP-----K----------------PGKRFWDPLNP--ASDLLDGAD  203 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSC-----C----------------TTCEECCTTSC--CTTTTTTCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC-----C----------------ccceeecccch--hHHhcCCCC
Confidence            679999999999999999999999999999999872     1                11256777643  456678999


Q ss_pred             EEEEecccCCC---CCCChhhHHHHHHHHHHHHHHHH-HHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhh
Q 020104           85 GVLHVATPVDF---EDKEPEEVITQRAINGTLGILKS-CLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRK  160 (331)
Q Consensus        85 ~Vih~a~~~~~---~~~~~~~~~~~~n~~~~~~l~~~-~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~  160 (331)
                      +|||+|+....   ...++ ..++++|+.++.+|+++ +++.+ +++|||+||.++|+. .....+++|+++        
T Consensus       204 ~Vih~A~~~~~~~~~~~~~-~~~~~~Nv~gt~~ll~a~a~~~~-~~r~V~~SS~~vyg~-~~~~~~~~E~~~--------  272 (516)
T 3oh8_A          204 VLVHLAGEPIFGRFNDSHK-EAIRESRVLPTKFLAELVAESTQ-CTTMISASAVGFYGH-DRGDEILTEESE--------  272 (516)
T ss_dssp             EEEECCCC-----CCGGGH-HHHHHHTHHHHHHHHHHHHHCSS-CCEEEEEEEGGGGCS-EEEEEEECTTSC--------
T ss_pred             EEEECCCCccccccchhHH-HHHHHHHHHHHHHHHHHHHhcCC-CCEEEEeCcceEecC-CCCCCccCCCCC--------
Confidence            99999997532   22233 37899999999999999 55556 899999999999852 234457888874        


Q ss_pred             cCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHH-hCCCcccccCCC-ccceeHHH
Q 020104          161 LDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALI-LGNREEYGFLLN-TSMVHVDD  238 (331)
Q Consensus       161 ~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~i~v~D  238 (331)
                        .|.+.|+.+|...|..+... ...+++++++||+.+||++.     ..+..+.... .+....++.+.. ++|+|++|
T Consensus       273 --~~~~~y~~~~~~~E~~~~~~-~~~gi~~~ilRp~~v~Gp~~-----~~~~~~~~~~~~g~~~~~g~g~~~~~~i~v~D  344 (516)
T 3oh8_A          273 --SGDDFLAEVCRDWEHATAPA-SDAGKRVAFIRTGVALSGRG-----GMLPLLKTLFSTGLGGKFGDGTSWFSWIAIDD  344 (516)
T ss_dssp             --CCSSHHHHHHHHHHHTTHHH-HHTTCEEEEEEECEEEBTTB-----SHHHHHHHTTC---CCCCTTSCCEECEEEHHH
T ss_pred             --CCcChHHHHHHHHHHHHHHH-HhCCCCEEEEEeeEEECCCC-----ChHHHHHHHHHhCCCcccCCCCceEceEeHHH
Confidence              25678999999999887654 45799999999999999973     1233332222 223344554444 79999999


Q ss_pred             HHHHHHHhhcCCCCCceEEE-eccccCHHHHHHHHHhhCCCC---CCCCccCCccc---------cCCcCcccCcHHHHH
Q 020104          239 VARAHIFLLEYPDAKGRYIC-SSHTLTIQEMAEFLSAKYPEY---PIPTVDSLAEI---------EGYRAPGSSSKKLLD  305 (331)
Q Consensus       239 ~a~~~~~~~~~~~~~~~~~~-~~~~~s~~e~~~~i~~~~~~~---~~~~~~~~~~~---------~~~~~~~~~~~k~~~  305 (331)
                      +|++++.+++++..+++||+ +++.+|+.|+++.+.+.+|..   ++|.  +....         .......++++|++.
T Consensus       345 va~ai~~~l~~~~~~g~~ni~~~~~~s~~el~~~i~~~~g~~~~~~~p~--~~~~~~~g~~~~~~~~~~~~~~~~~kl~~  422 (516)
T 3oh8_A          345 LTDIYYRAIVDAQISGPINAVAPNPVSNADMTKILATSMHRPAFIQIPS--LGPKILLGSQGAEELALASQRTAPAALEN  422 (516)
T ss_dssp             HHHHHHHHHHCTTCCEEEEESCSCCEEHHHHHHHTTC-----------------------CCGGGGGGCEEEECCHHHHH
T ss_pred             HHHHHHHHHhCcccCCcEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCH--HHHHHHhCCchhHHHhhcCCeechHHHHH
Confidence            99999999998877889986 567899999999999987722   2222  11111         112345678899988


Q ss_pred             cCCccccC-hhhhHHHHHHH
Q 020104          306 AGFRYNYG-IDEMFDEAIQC  324 (331)
Q Consensus       306 lg~~~~~~-~~e~i~~~~~~  324 (331)
                      +||+|+++ ++++|+++++.
T Consensus       423 lG~~~~~~~l~e~l~~~l~~  442 (516)
T 3oh8_A          423 LSHTFRYTDIGAAIAHELGY  442 (516)
T ss_dssp             TTCCCSCSSHHHHHHHHHTC
T ss_pred             CCCCCCCCCHHHHHHHHhCc
Confidence            99999996 99999999864

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=100.00  E-value=2.4e-36  Score=274.04  Aligned_cols=307  Identities=14%  Similarity=0.118  Sum_probs=213.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccC----C------CCCCCcEEEEeCCCCCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKN----L------PGASERLRIFHADLSHP   73 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~D~~~~   73 (331)
                      .+|+|||||||||||++++++|++.|++|++++|+.     ........+.+    .      .....+++++.+|+.|+
T Consensus        68 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~-----~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~  142 (427)
T 4f6c_A           68 PLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRAD-----NEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECM  142 (427)
T ss_dssp             CCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECS-----SHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---
T ss_pred             CCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCC-----ChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCc
Confidence            357899999999999999999999999999999988     31111111100    0      00125799999999998


Q ss_pred             ccHHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccce--eecCCCCCCcccCCC
Q 020104           74 DGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAA--VFYNDKDVDMMDETF  151 (331)
Q Consensus        74 ~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~--~~~~~~~~~~~~E~~  151 (331)
                      +++. .+.++|+|||+|+..... .++. ..+++|+.++.+++++|++ + +++|||+||.++  +........+++|++
T Consensus       143 ~~l~-~~~~~d~Vih~A~~~~~~-~~~~-~~~~~Nv~g~~~l~~aa~~-~-~~~~v~~SS~~~G~~~~~~~~~~~~~E~~  217 (427)
T 4f6c_A          143 DDVV-LPENMDTIIHAGARTDHF-GDDD-EFEKVNVQGTVDVIRLAQQ-H-HARLIYVSTISVGTYFDIDTEDVTFSEAD  217 (427)
T ss_dssp             CCCC-CSSCCSEEEECCCCC---------CHHHHHHHHHHHHHHHHHH-T-TCEEEEEEEGGGGSEECSSCSCCEECTTC
T ss_pred             ccCC-CcCCCCEEEECCcccCCC-CCHH-HHHHHHHHHHHHHHHHHHh-c-CCcEEEECchHhCCCccCCCCCccccccc
Confidence            8887 667899999999976533 3344 8899999999999999999 5 799999999998  211224466788887


Q ss_pred             CCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCc-----cHHHHHHHH-hCCCccc
Q 020104          152 WSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAG-----SVRSSLALI-LGNREEY  225 (331)
Q Consensus       152 ~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~-----~~~~~~~~~-~~~~~~~  225 (331)
                      +..      ...|.+.|+.+|..+|.+++.+++ .+++++++||++|||+........     .+..++... .+.....
T Consensus       218 ~~~------~~~~~~~Y~~sK~~~E~~~~~~~~-~g~~~~ivRpg~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (427)
T 4f6c_A          218 VYK------GQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGV  290 (427)
T ss_dssp             SCS------SCCCCSHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCEESCSSSCCCCTTGGGCHHHHHHHHHHHSSEEEH
T ss_pred             ccc------CCCCCCchHHHHHHHHHHHHHHHH-cCCCEEEEeCCeeecCCCCCccccCcchHHHHHHHHHHHhcCCCCC
Confidence            521      124678999999999999999865 689999999999999987653221     133333332 3333332


Q ss_pred             ccCCC-ccceeHHHHHHHHHHhhcCCCCCceEEE-eccccCHHHHHHHHHhhCCCCCCCCccCCccc-------------
Q 020104          226 GFLLN-TSMVHVDDVARAHIFLLEYPDAKGRYIC-SSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEI-------------  290 (331)
Q Consensus       226 ~~~~~-~~~i~v~D~a~~~~~~~~~~~~~~~~~~-~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~-------------  290 (331)
                      +.+.. ++|+|++|+|++++.++..+..+++||+ +++++|+.|+++.+.+ ++...++...+....             
T Consensus       291 ~~~~~~~~~v~v~DvA~ai~~~~~~~~~g~~~~l~~~~~~s~~el~~~i~~-~g~~~~~~~~~~~~l~~~~~~~~~~~~~  369 (427)
T 4f6c_A          291 SMAEMPVDFSFVDTTARQIVALAQVNTPQIIYHVLSPNKMPVKSLLECVKR-KEIELVSDESFNEILQKQDMYETIGLTS  369 (427)
T ss_dssp             HHHTCEECCEEHHHHHHHHHHHTTSCCCCSEEEESCSCCEEHHHHHHHHHS-SCCEEECHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccccceEEEeeHHHHHHHHHHHHcCCCCCCEEEecCCCCCcHHHHHHHHHH-cCCcccCHHHHHHHHHhcCchhhhhhhh
Confidence            22233 7999999999999999998777789997 4678999999999998 551111110000000             


Q ss_pred             --cCCcCcccCcHHH----HHcCCccccChhhhHHHHHHHHHHc
Q 020104          291 --EGYRAPGSSSKKL----LDAGFRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       291 --~~~~~~~~~~~k~----~~lg~~~~~~~~e~i~~~~~~~~~~  328 (331)
                        .......+|+++.    +.+||.+...-++.++++++++++.
T Consensus       370 ~~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~l~~~  413 (427)
T 4f6c_A          370 VDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTI  413 (427)
T ss_dssp             HHHTSEECEECCHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHH
T ss_pred             ccccCCceeccHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHH
Confidence              0122456666665    4569998854555899999888653

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=100.00  E-value=2.8e-36  Score=279.27  Aligned_cols=306  Identities=14%  Similarity=0.125  Sum_probs=215.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccC----C------CCCCCcEEEEeCCCCCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKN----L------PGASERLRIFHADLSHP   73 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~D~~~~   73 (331)
                      .+|+|||||||||||++|+++|++.|++|++++|+.     ........+.+    .      .....+++++.+|+.|+
T Consensus       149 ~~~~VLVTGatG~iG~~l~~~L~~~g~~V~~l~R~~-----~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~  223 (508)
T 4f6l_B          149 PLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRAD-----NEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECM  223 (508)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHTBTTEEEEEEEEESS-----SHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBC
T ss_pred             CCCeEEEECCccchHHHHHHHHHhcCCEEEEEECCC-----ChHHHHHHHHHHHHHhcccccchhccCceEEEecCCccc
Confidence            357999999999999999999988899999999987     21111111100    0      00125899999999998


Q ss_pred             ccHHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccce--eecCCCCCCcccCCC
Q 020104           74 DGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAA--VFYNDKDVDMMDETF  151 (331)
Q Consensus        74 ~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~--~~~~~~~~~~~~E~~  151 (331)
                      +.+. +..++|+|||+|+..... .++. ..+++|+.++.+++++|++ + .++|||+||.++  +........+++|++
T Consensus       224 ~~l~-~~~~~D~Vih~Aa~~~~~-~~~~-~~~~~Nv~gt~~ll~~a~~-~-~~~~v~iSS~~vG~~~~~~~~~~~~~E~~  298 (508)
T 4f6l_B          224 DDVV-LPENMDTIIHAGARTDHF-GDDD-EFEKVNVQGTVDVIRLAQQ-H-HARLIYVSTISVGTYFDIDTEDVTFSEAD  298 (508)
T ss_dssp             SSCC-CSSCCSEEEECCCC----------CCHHHHHHHHHHHHHHHHT-T-TCEEEEEEESCTTSEECTTCSCCEECTTC
T ss_pred             ccCC-CccCCCEEEECCceecCC-CCHH-HHhhhHHHHHHHHHHHHHh-C-CCcEEEeCChhhccCCccCCcCccccccc
Confidence            8777 667999999999977533 2333 7889999999999999999 5 689999999998  322234566788887


Q ss_pred             CCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCC-----ccHHHHHHHHhCC-Cccc
Q 020104          152 WSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFA-----GSVRSSLALILGN-REEY  225 (331)
Q Consensus       152 ~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~-----~~~~~~~~~~~~~-~~~~  225 (331)
                      +..      ...|.+.|+.+|..+|++++.+++ .+++++++||+.|||++......     ..+..++...... ....
T Consensus       299 ~~~------~~~~~~~Y~~sK~~~E~~~~~~~~-~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  371 (508)
T 4f6l_B          299 VYK------GQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGV  371 (508)
T ss_dssp             SCS------SBCCCSHHHHHHHHHHHHHHHHHH-TTCEEEEEEECCEESCSSSCCCCTTCTTCHHHHHHHHHTTCSEEET
T ss_pred             ccc------cccCCCcHHHHHHHHHHHHHHHHH-cCCCEEEEecceeccCCCCCcccCCcchHHHHHHHHHHHHcCCCCC
Confidence            531      123678999999999999999765 79999999999999998765321     1233334333322 2222


Q ss_pred             ccCCC-ccceeHHHHHHHHHHhhcCCCCCceEEEe-ccccCHHHHHHHHHhhCCCCCCCCccCCccc-------------
Q 020104          226 GFLLN-TSMVHVDDVARAHIFLLEYPDAKGRYICS-SHTLTIQEMAEFLSAKYPEYPIPTVDSLAEI-------------  290 (331)
Q Consensus       226 ~~~~~-~~~i~v~D~a~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~-------------  290 (331)
                      +.+.. ++|+|++|+|++++.++.++..+++||++ ++.+|+.|+++.+.+.. ...++...+....             
T Consensus       372 ~~g~~~~~~v~v~DvA~ai~~~~~~~~~~~~~nl~~~~~~s~~el~~~i~~~~-~~~~~~~~w~~~l~~~~~~~~~~~~~  450 (508)
T 4f6l_B          372 SMAEMPVDFSFVDTTARQIVALAQVNTPQIIYHVLSPNKMPVKSLLECVKRKE-IELVSDESFNEILQKQDMYETIGLTS  450 (508)
T ss_dssp             TGGGSEEECEEHHHHHHHHHHHTTBCCSCSEEEESCSCEEEHHHHHHHHHSSC-CEEECHHHHHHHHHTTCCHHHHHHHH
T ss_pred             CccCceEEEEcHHHHHHHHHHHHhCCCCCCEEEeCCCCCCCHHHHHHHHHHcC-CcccCHHHHHHHHHhcCCccchhccc
Confidence            22233 79999999999999999987777899974 57899999999999754 1111110000000             


Q ss_pred             --cCCcCcccCcHHH----HHcCCccccChhhhHHHHHHHHHH
Q 020104          291 --EGYRAPGSSSKKL----LDAGFRYNYGIDEMFDEAIQCCKE  327 (331)
Q Consensus       291 --~~~~~~~~~~~k~----~~lg~~~~~~~~e~i~~~~~~~~~  327 (331)
                        .......+|+++.    +.+||.+....++.++++++++++
T Consensus       451 ~~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~~~~  493 (508)
T 4f6l_B          451 VDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKT  493 (508)
T ss_dssp             TGGGSEECEECCHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHH
T ss_pred             ccccCcceecchHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence              0122455666654    556999886667789998888765

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=4.6e-36  Score=249.29  Aligned_cols=224  Identities=23%  Similarity=0.255  Sum_probs=172.3

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |+. ||+|||||||||||++++++|+++|++|++++|++     .....+         ..+++++.+|+.|.+++.+++
T Consensus         1 M~~-m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~-----~~~~~~---------~~~~~~~~~Dl~d~~~~~~~~   65 (227)
T 3dhn_A            1 MEK-VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHP-----EKIKIE---------NEHLKVKKADVSSLDEVCEVC   65 (227)
T ss_dssp             --C-CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCG-----GGCCCC---------CTTEEEECCCTTCHHHHHHHH
T ss_pred             CCC-CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCc-----ccchhc---------cCceEEEEecCCCHHHHHHHh
Confidence            654 57999999999999999999999999999999987     221111         157899999999999999999


Q ss_pred             cCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhh
Q 020104           81 AGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRK  160 (331)
Q Consensus        81 ~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~  160 (331)
                      +++|+|||+|+...    +.. ..+++|+.++.++++++++.+ +++|||+||.++++..+   ....|+++        
T Consensus        66 ~~~d~vi~~a~~~~----~~~-~~~~~n~~~~~~l~~~~~~~~-~~~~v~~Ss~~~~~~~~---~~~~~~~~--------  128 (227)
T 3dhn_A           66 KGADAVISAFNPGW----NNP-DIYDETIKVYLTIIDGVKKAG-VNRFLMVGGAGSLFIAP---GLRLMDSG--------  128 (227)
T ss_dssp             TTCSEEEECCCC-----------CCSHHHHHHHHHHHHHHHTT-CSEEEEECCSTTSEEET---TEEGGGTT--------
T ss_pred             cCCCEEEEeCcCCC----CCh-hHHHHHHHHHHHHHHHHHHhC-CCEEEEeCChhhccCCC---CCccccCC--------
Confidence            99999999998642    122 578899999999999999998 89999999998875332   12233332        


Q ss_pred             cCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHHHHH
Q 020104          161 LDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVA  240 (331)
Q Consensus       161 ~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a  240 (331)
                       ..|.+.|+.+|..+|.+++.+.++++++++++||+.+||++.......         .+....+..+..++|+|++|+|
T Consensus       129 -~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~~~~---------~~~~~~~~~~~~~~~i~~~Dva  198 (227)
T 3dhn_A          129 -EVPENILPGVKALGEFYLNFLMKEKEIDWVFFSPAADMRPGVRTGRYR---------LGKDDMIVDIVGNSHISVEDYA  198 (227)
T ss_dssp             -CSCGGGHHHHHHHHHHHHHTGGGCCSSEEEEEECCSEEESCCCCCCCE---------EESSBCCCCTTSCCEEEHHHHH
T ss_pred             -cchHHHHHHHHHHHHHHHHHHhhccCccEEEEeCCcccCCCcccccee---------ecCCCcccCCCCCcEEeHHHHH
Confidence             346778999999999999998877899999999999999986542211         1223333333337999999999


Q ss_pred             HHHHHhhcCCCC-CceEEEe-ccccCHH
Q 020104          241 RAHIFLLEYPDA-KGRYICS-SHTLTIQ  266 (331)
Q Consensus       241 ~~~~~~~~~~~~-~~~~~~~-~~~~s~~  266 (331)
                      ++++.+++++.. +++|+++ +++.++.
T Consensus       199 ~ai~~~l~~~~~~g~~~~~~~~~~~~~~  226 (227)
T 3dhn_A          199 AAMIDELEHPKHHQERFTIGYLEHHHHH  226 (227)
T ss_dssp             HHHHHHHHSCCCCSEEEEEECCSCCC--
T ss_pred             HHHHHHHhCccccCcEEEEEeehhcccC
Confidence            999999998874 6688864 5777765

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=100.00  E-value=4.9e-36  Score=256.10  Aligned_cols=262  Identities=17%  Similarity=0.073  Sum_probs=197.5

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC--c
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG--C   83 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~   83 (331)
                      |+|||||||||||++++++|++ |++|++++|++.     ..             .+   +.+|+.|++++.+++++  +
T Consensus         1 m~ilVtGatG~iG~~l~~~L~~-g~~V~~~~r~~~-----~~-------------~~---~~~Dl~~~~~~~~~~~~~~~   58 (273)
T 2ggs_A            1 MRTLITGASGQLGIELSRLLSE-RHEVIKVYNSSE-----IQ-------------GG---YKLDLTDFPRLEDFIIKKRP   58 (273)
T ss_dssp             CCEEEETTTSHHHHHHHHHHTT-TSCEEEEESSSC-----CT-------------TC---EECCTTSHHHHHHHHHHHCC
T ss_pred             CEEEEECCCChhHHHHHHHHhc-CCeEEEecCCCc-----CC-------------CC---ceeccCCHHHHHHHHHhcCC
Confidence            3799999999999999999995 899999999872     10             12   78999999999999875  9


Q ss_pred             cEEEEecccCCCC--CCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhc
Q 020104           84 TGVLHVATPVDFE--DKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKL  161 (331)
Q Consensus        84 d~Vih~a~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~  161 (331)
                      |+|||+|+.....  ..++. ..+++|+.++.+++++|++.+ . +|||+||.++|+..   ..+++|+++         
T Consensus        59 d~vi~~a~~~~~~~~~~~~~-~~~~~n~~~~~~l~~~~~~~~-~-~iv~~SS~~~~~~~---~~~~~e~~~---------  123 (273)
T 2ggs_A           59 DVIINAAAMTDVDKCEIEKE-KAYKINAEAVRHIVRAGKVID-S-YIVHISTDYVFDGE---KGNYKEEDI---------  123 (273)
T ss_dssp             SEEEECCCCCCHHHHHHCHH-HHHHHHTHHHHHHHHHHHHTT-C-EEEEEEEGGGSCSS---SCSBCTTSC---------
T ss_pred             CEEEECCcccChhhhhhCHH-HHHHHhHHHHHHHHHHHHHhC-C-eEEEEecceeEcCC---CCCcCCCCC---------
Confidence            9999999975421  22444 889999999999999999987 5 99999999998522   237788774         


Q ss_pred             CCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHH-HhCCCcccccCCCccceeHHHHH
Q 020104          162 DSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLAL-ILGNREEYGFLLNTSMVHVDDVA  240 (331)
Q Consensus       162 ~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~v~D~a  240 (331)
                      ..|.+.|+.+|..+|.+++.      ++++++||+.+||+.      .....+... ..+........ .++++|++|+|
T Consensus       124 ~~~~~~Y~~sK~~~e~~~~~------~~~~~iR~~~v~G~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dva  190 (273)
T 2ggs_A          124 PNPINYYGLSKLLGETFALQ------DDSLIIRTSGIFRNK------GFPIYVYKTLKEGKTVFAFKG-YYSPISARKLA  190 (273)
T ss_dssp             CCCSSHHHHHHHHHHHHHCC------TTCEEEEECCCBSSS------SHHHHHHHHHHTTCCEEEESC-EECCCBHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhC------CCeEEEecccccccc------HHHHHHHHHHHcCCCEEeecC-CCCceEHHHHH
Confidence            34567899999999999876      678999999999831      122222222 23333222212 46899999999


Q ss_pred             HHHHHhhcCCCCCceEEEeccccCHHHHHHHHHhhCCCC-CCCCccCCcc--ccCCcCcccCcHHH-HHcCCcc-ccChh
Q 020104          241 RAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEY-PIPTVDSLAE--IEGYRAPGSSSKKL-LDAGFRY-NYGID  315 (331)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~k~-~~lg~~~-~~~~~  315 (331)
                      ++++.+++++. +++||++++.+|+.|+++.+.+.+|.. .+........  ........+|++|+ +.|||+| .++++
T Consensus       191 ~~i~~~~~~~~-~g~~~i~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~l~  269 (273)
T 2ggs_A          191 SAILELLELRK-TGIIHVAGERISRFELALKIKEKFNLPGEVKEVDEVRGWIAKRPYDSSLDSSRARKILSTDFYTLDLD  269 (273)
T ss_dssp             HHHHHHHHHTC-CEEEECCCCCEEHHHHHHHHHHHTTCCSCEEEESSCTTCCSCCCSBCCBCCHHHHHHCSSCCCSCCGG
T ss_pred             HHHHHHHhcCc-CCeEEECCCcccHHHHHHHHHHHhCCChhhcccccccccccCCCcccccCHHHHHHHhCCCCCCcccc
Confidence            99999998764 668997668899999999999998832 1110001101  12234678999999 7799999 57999


Q ss_pred             hhH
Q 020104          316 EMF  318 (331)
Q Consensus       316 e~i  318 (331)
                      +++
T Consensus       270 ~~~  272 (273)
T 2ggs_A          270 GMV  272 (273)
T ss_dssp             GCC
T ss_pred             ccc
Confidence            875

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=100.00  E-value=2.8e-35  Score=250.58  Aligned_cols=236  Identities=18%  Similarity=0.161  Sum_probs=188.9

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      ||+|||||||||||++++++|++.|++|++++|++.     ..  .         ..+++++.+|+.|++++.++++++|
T Consensus         2 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-----~~--~---------~~~~~~~~~Dl~d~~~~~~~~~~~d   65 (267)
T 3ay3_A            2 LNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDL-----GA--A---------EAHEEIVACDLADAQAVHDLVKDCD   65 (267)
T ss_dssp             EEEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCC-----CC--C---------CTTEEECCCCTTCHHHHHHHHTTCS
T ss_pred             CceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCc-----cc--c---------CCCccEEEccCCCHHHHHHHHcCCC
Confidence            578999999999999999999999999999999872     11  0         1367899999999999999999999


Q ss_pred             EEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCCC
Q 020104           85 GVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSW  164 (331)
Q Consensus        85 ~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~  164 (331)
                      +|||+|+...  ..++. ..+++|+.++.++++++++.+ +++|||+||..+|+. .....+++|+++         ..|
T Consensus        66 ~vi~~a~~~~--~~~~~-~~~~~n~~~~~~l~~a~~~~~-~~~iv~~SS~~~~~~-~~~~~~~~E~~~---------~~~  131 (267)
T 3ay3_A           66 GIIHLGGVSV--ERPWN-DILQANIIGAYNLYEAARNLG-KPRIVFASSNHTIGY-YPRTTRIDTEVP---------RRP  131 (267)
T ss_dssp             EEEECCSCCS--CCCHH-HHHHHTHHHHHHHHHHHHHTT-CCEEEEEEEGGGSTT-SBTTSCBCTTSC---------CCC
T ss_pred             EEEECCcCCC--CCCHH-HHHHHHHHHHHHHHHHHHHhC-CCEEEEeCCHHHhCC-CCCCCCCCCCCC---------CCC
Confidence            9999999752  23444 889999999999999999988 899999999999853 233467888875         345


Q ss_pred             CchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHHHHHHHHH
Q 020104          165 GKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHI  244 (331)
Q Consensus       165 ~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~  244 (331)
                      .+.|+.+|..+|.+++.+..+++++++++||+.+|+....                 ..     ..++++|++|+|++++
T Consensus       132 ~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~~~~~~-----------------~~-----~~~~~~~~~dva~~~~  189 (267)
T 3ay3_A          132 DSLYGLSKCFGEDLASLYYHKFDIETLNIRIGSCFPKPKD-----------------AR-----MMATWLSVDDFMRLMK  189 (267)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHTTCCCEEEEEECBCSSSCCS-----------------HH-----HHHHBCCHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHcCCCEEEEeceeecCCCCC-----------------CC-----eeeccccHHHHHHHHH
Confidence            6789999999999999988878999999999999843100                 00     0148999999999999


Q ss_pred             HhhcCCCC-CceEEEeccccCHHHHHHHHHhhCCCCCCCCccCCccccCCcCcccCcHHHHHcCCccccChhhhHHHHHH
Q 020104          245 FLLEYPDA-KGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSSKKLLDAGFRYNYGIDEMFDEAIQ  323 (331)
Q Consensus       245 ~~~~~~~~-~~~~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lg~~~~~~~~e~i~~~~~  323 (331)
                      .+++++.. .++|++.++.                               ...+.+..+++.+||+|+++++++++++.+
T Consensus       190 ~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~d~~~~~~lg~~p~~~~~~~~~~~~~  238 (267)
T 3ay3_A          190 RAFVAPKLGCTVVYGASAN-------------------------------TESWWDNDKSAFLGWVPQDSSEIWREEIEQ  238 (267)
T ss_dssp             HHHHSSCCCEEEEEECCSC-------------------------------SSCCBCCGGGGGGCCCCCCCGGGGHHHHHH
T ss_pred             HHHhCCCCCceeEecCCCc-------------------------------cccccCHHHHHHcCCCCCCCHHHHHHHHHh
Confidence            99988755 3466653210                               122355556677899999999999998865

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=100.00  E-value=2.9e-35  Score=270.08  Aligned_cols=261  Identities=18%  Similarity=0.174  Sum_probs=191.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHC---CCeEEEEecCCCCcccCCccccccccCCCC-------------CCCcEEEEe
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDH---GYSVTTTVRSELDPEHRNSKDLSFLKNLPG-------------ASERLRIFH   67 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~---g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~   67 (331)
                      .+|+|||||||||||++|+++|++.   |++|++++|+.     ........+.+...             ...+++++.
T Consensus        72 ~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~  146 (478)
T 4dqv_A           72 ELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAE-----SDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVA  146 (478)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSS-----SHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCC-----CcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEE
Confidence            4689999999999999999999998   89999999987     32222222211111             125799999


Q ss_pred             CCCC------CCccHHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCC
Q 020104           68 ADLS------HPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYND  141 (331)
Q Consensus        68 ~D~~------~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~  141 (331)
                      +|+.      |.+.+.++++++|+|||+|+....  .++. ..+++|+.++.+++++|++.+ +++|||+||.++|+  .
T Consensus       147 ~Dl~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~--~~~~-~~~~~Nv~gt~~ll~aa~~~~-~~~~V~iSS~~v~~--~  220 (478)
T 4dqv_A          147 GDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNA--FPYH-ELFGPNVAGTAELIRIALTTK-LKPFTYVSTADVGA--A  220 (478)
T ss_dssp             CCTTSGGGGCCHHHHHHHHHHCCEEEECCSSCSB--SSCC-EEHHHHHHHHHHHHHHHTSSS-CCCEEEEEEGGGGT--T
T ss_pred             eECCCcccCCCHHHHHHHHcCCCEEEECccccCC--cCHH-HHHHHHHHHHHHHHHHHHhCC-CCeEEEEeehhhcC--c
Confidence            9998      556788888899999999998765  3444 889999999999999999988 89999999999885  3


Q ss_pred             CCCCcccCCCCCChhhh--hhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCC---CCCccHHHHHH
Q 020104          142 KDVDMMDETFWSDVDYI--RKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICP---KFAGSVRSSLA  216 (331)
Q Consensus       142 ~~~~~~~E~~~~~~~~~--~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~---~~~~~~~~~~~  216 (331)
                      ....+++|+++......  .......+.|+.+|..+|.+++.++.+.+++++++||++|||++...   ....++..++.
T Consensus       221 ~~~~~~~E~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ivRpg~v~G~~~~~g~~~~~~~~~~l~~  300 (478)
T 4dqv_A          221 IEPSAFTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRMVL  300 (478)
T ss_dssp             SCTTTCCSSSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECCSSSSSCCCTTBHHHHHHH
T ss_pred             cCCCCcCCcccccccCcccccccccccchHHHHHHHHHHHHHHHHHhCCCeEEEECceeeCCCccCCcCCHHHHHHHHHH
Confidence            44567788764211000  00011235699999999999999998889999999999999986522   22233444333


Q ss_pred             HHh--CCC-cccc-c-------CCCccceeHHHHHHHHHHhhcC-----CCCCceEEEe-ccc--cCHHHHHHHHHhh
Q 020104          217 LIL--GNR-EEYG-F-------LLNTSMVHVDDVARAHIFLLEY-----PDAKGRYICS-SHT--LTIQEMAEFLSAK  275 (331)
Q Consensus       217 ~~~--~~~-~~~~-~-------~~~~~~i~v~D~a~~~~~~~~~-----~~~~~~~~~~-~~~--~s~~e~~~~i~~~  275 (331)
                      ...  |.. ..+. .       ...++++|++|+|++++.++.+     ...+++||++ ++.  +|+.|+++.+.+.
T Consensus       301 ~~~~~g~~P~~~~~~~~~G~~~~~~~~~v~vdDvA~ai~~~~~~~~~~~~~~~~~ynv~~~~~~~~s~~el~~~l~~~  378 (478)
T 4dqv_A          301 SLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGSSLAGFATYHVMNPHDDGIGLDEYVDWLIEA  378 (478)
T ss_dssp             HHHHHCEEESCSBCCCTTSCCCCCCCCEEEHHHHHHHHHHHHHTTC-CCCCSEEEEEESCCCCSSCSHHHHHHHHHHT
T ss_pred             HHHHcCcccccccccccccccccceeeeeeHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCCCcCHHHHHHHHHHc
Confidence            222  221 1111 1       1226999999999999999875     3345689975 455  9999999999985

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=100.00  E-value=9.7e-35  Score=255.75  Aligned_cols=232  Identities=16%  Similarity=0.225  Sum_probs=184.2

Q ss_pred             CceEEEecCcchhHHHHHHHHHHC-CC-eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDH-GY-SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~-g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      +|+||||||||+||++++++|++. |+ +|++++|+.     .....+...  +.  ..+++++.+|+.|.+++.+++++
T Consensus        21 ~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~-----~~~~~~~~~--~~--~~~v~~~~~Dl~d~~~l~~~~~~   91 (344)
T 2gn4_A           21 NQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDE-----LKQSEMAME--FN--DPRMRFFIGDVRDLERLNYALEG   91 (344)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCH-----HHHHHHHHH--HC--CTTEEEEECCTTCHHHHHHHTTT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECCh-----hhHHHHHHH--hc--CCCEEEEECCCCCHHHHHHHHhc
Confidence            478999999999999999999999 97 999999986     222221111  11  15789999999999999999999


Q ss_pred             ccEEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhh
Q 020104           83 CTGVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRK  160 (331)
Q Consensus        83 ~d~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~  160 (331)
                      +|+|||+|+....  ...++. +.+++|+.++.+++++|.+.+ +++||++||..++                       
T Consensus        92 ~D~Vih~Aa~~~~~~~~~~~~-~~~~~Nv~gt~~l~~aa~~~~-v~~~V~~SS~~~~-----------------------  146 (344)
T 2gn4_A           92 VDICIHAAALKHVPIAEYNPL-ECIKTNIMGASNVINACLKNA-ISQVIALSTDKAA-----------------------  146 (344)
T ss_dssp             CSEEEECCCCCCHHHHHHSHH-HHHHHHHHHHHHHHHHHHHTT-CSEEEEECCGGGS-----------------------
T ss_pred             CCEEEECCCCCCCCchhcCHH-HHHHHHHHHHHHHHHHHHhCC-CCEEEEecCCccC-----------------------
Confidence            9999999986541  122444 889999999999999999998 8999999997654                       


Q ss_pred             cCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHH-HhCC-CcccccCCC-ccce
Q 020104          161 LDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLAL-ILGN-REEYGFLLN-TSMV  234 (331)
Q Consensus       161 ~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~-~~~i  234 (331)
                        .|.++|+.+|.++|.+++.++.+   .+++++++||+++||++..     .+..+... ..+. +..+..+.. ++|+
T Consensus       147 --~p~~~Y~~sK~~~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~~~-----~i~~~~~~~~~g~~~~~i~~~~~~r~~i  219 (344)
T 2gn4_A          147 --NPINLYGATKLCSDKLFVSANNFKGSSQTQFSVVRYGNVVGSRGS-----VVPFFKKLVQNKASEIPITDIRMTRFWI  219 (344)
T ss_dssp             --SCCSHHHHHHHHHHHHHHHGGGCCCSSCCEEEEECCCEETTCTTS-----HHHHHHHHHHHTCCCEEESCTTCEEEEE
T ss_pred             --CCccHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEEeccEECCCCC-----HHHHHHHHHHcCCCceEEeCCCeEEeeE
Confidence              23468999999999999988753   4799999999999998632     33333333 3444 334443333 7899


Q ss_pred             eHHHHHHHHHHhhcCCCCCceEEEeccccCHHHHHHHHHhhCC
Q 020104          235 HVDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYP  277 (331)
Q Consensus       235 ~v~D~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~~  277 (331)
                      |++|+|++++.+++++..+++|++++..+|+.|+++.+.+.++
T Consensus       220 ~v~D~a~~v~~~l~~~~~g~~~~~~~~~~s~~el~~~i~~~~~  262 (344)
T 2gn4_A          220 TLDEGVSFVLKSLKRMHGGEIFVPKIPSMKMTDLAKALAPNTP  262 (344)
T ss_dssp             CHHHHHHHHHHHHHHCCSSCEEEECCCEEEHHHHHHHHCTTCC
T ss_pred             EHHHHHHHHHHHHhhccCCCEEecCCCcEEHHHHHHHHHHhCC
Confidence            9999999999999887666789987778999999999987654

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=100.00  E-value=1e-34  Score=249.79  Aligned_cols=257  Identities=20%  Similarity=0.233  Sum_probs=191.5

Q ss_pred             ceEEEecCcchhHHHHHHHHHHC--CCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDH--GYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      |+|||||||||||++++++|+++  |++|++++|++     .....+.   .     .+++++.+|+.|++++.++++++
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~-----~~~~~l~---~-----~~~~~~~~D~~d~~~l~~~~~~~   67 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNV-----EKASTLA---D-----QGVEVRHGDYNQPESLQKAFAGV   67 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCT-----TTTHHHH---H-----TTCEEEECCTTCHHHHHHHTTTC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCH-----HHHhHHh---h-----cCCeEEEeccCCHHHHHHHHhcC
Confidence            47999999999999999999998  99999999987     2222221   1     36789999999999999999999


Q ss_pred             cEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCC
Q 020104           84 TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDS  163 (331)
Q Consensus        84 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~  163 (331)
                      |+|||+|+.. .     . .  ++|+.++.+++++|++.+ +++|||+||.+++.            .            
T Consensus        68 d~vi~~a~~~-~-----~-~--~~n~~~~~~l~~a~~~~~-~~~~v~~Ss~~~~~------------~------------  113 (287)
T 2jl1_A           68 SKLLFISGPH-Y-----D-N--TLLIVQHANVVKAARDAG-VKHIAYTGYAFAEE------------S------------  113 (287)
T ss_dssp             SEEEECCCCC-S-----C-H--HHHHHHHHHHHHHHHHTT-CSEEEEEEETTGGG------------C------------
T ss_pred             CEEEEcCCCC-c-----C-c--hHHHHHHHHHHHHHHHcC-CCEEEEECCCCCCC------------C------------
Confidence            9999999852 1     1 1  579999999999999998 89999999987651            0            


Q ss_pred             CCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCC-CccceeHHHHHHH
Q 020104          164 WGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLL-NTSMVHVDDVARA  242 (331)
Q Consensus       164 ~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~D~a~~  242 (331)
                       ..+|+.+|..+|++++.    ++++++++||+.++|+...    ..+..   ........++.+. .++|+|++|+|++
T Consensus       114 -~~~y~~~K~~~E~~~~~----~~~~~~ilrp~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~i~~~Dva~~  181 (287)
T 2jl1_A          114 -IIPLAHVHLATEYAIRT----TNIPYTFLRNALYTDFFVN----EGLRA---STESGAIVTNAGSGIVNSVTRNELALA  181 (287)
T ss_dssp             -CSTHHHHHHHHHHHHHH----TTCCEEEEEECCBHHHHSS----GGGHH---HHHHTEEEESCTTCCBCCBCHHHHHHH
T ss_pred             -CCchHHHHHHHHHHHHH----cCCCeEEEECCEeccccch----hhHHH---HhhCCceeccCCCCccCccCHHHHHHH
Confidence             12599999999999864    6899999999998886421    12222   1222222233322 3799999999999


Q ss_pred             HHHhhcCCC-CCceEEEec-cccCHHHHHHHHHhhCCCC----CCCCccC--------Cccc-----------cCCcCcc
Q 020104          243 HIFLLEYPD-AKGRYICSS-HTLTIQEMAEFLSAKYPEY----PIPTVDS--------LAEI-----------EGYRAPG  297 (331)
Q Consensus       243 ~~~~~~~~~-~~~~~~~~~-~~~s~~e~~~~i~~~~~~~----~~~~~~~--------~~~~-----------~~~~~~~  297 (331)
                      ++.++.++. .+++||+++ +.+|+.|+++.+.+.+|..    .+|....        .+..           .......
T Consensus       182 ~~~~~~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (287)
T 2jl1_A          182 AATVLTEEGHENKTYNLVSNQPWTFDELAQILSEVSGKKVVHQPVSFEEEKNFLVNAGVPEPFTEITAAIYDAISKGEAS  261 (287)
T ss_dssp             HHHHHTSSSCTTEEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTC
T ss_pred             HHHHhcCCCCCCcEEEecCCCcCCHHHHHHHHHHHHCCcceEEeCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCCCc
Confidence            999998764 456898765 6899999999999988721    1111000        0000           0012456


Q ss_pred             cCcHHH-HHcCCccccChhhhHHHHHH
Q 020104          298 SSSKKL-LDAGFRYNYGIDEMFDEAIQ  323 (331)
Q Consensus       298 ~~~~k~-~~lg~~~~~~~~e~i~~~~~  323 (331)
                      .|++|+ +.||  |.++++|+++++++
T Consensus       262 ~~~~~~~~~lG--~~~~l~e~l~~~~~  286 (287)
T 2jl1_A          262 KTSDDLQKLIG--SLTPLKETVKQALK  286 (287)
T ss_dssp             CCCSHHHHHHS--SCCCHHHHHHHHHT
T ss_pred             CCchHHHHHhC--CCCCHHHHHHHHhc
Confidence            788999 7799  55699999999875

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=100.00  E-value=2.3e-34  Score=256.29  Aligned_cols=242  Identities=15%  Similarity=0.124  Sum_probs=189.0

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      |||||||||||||++|+++|+++|+ +|+.++|+                                .|.+++.++++++|
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~--------------------------------~d~~~l~~~~~~~d   48 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ--------------------------------TKEEELESALLKAD   48 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT--------------------------------CCHHHHHHHHHHCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC--------------------------------CCHHHHHHHhccCC
Confidence            4899999999999999999999998 77766553                                46678888999999


Q ss_pred             EEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCcc-EEEEecccceeecCCCCCCcccCCCCCChhhhhhcCC
Q 020104           85 GVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVK-RVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDS  163 (331)
Q Consensus        85 ~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~  163 (331)
                      +|||+|+....  .++. ..+++|+.++.+++++|++.+ ++ +|||+||.++|+                         
T Consensus        49 ~Vih~a~~~~~--~~~~-~~~~~n~~~~~~l~~a~~~~~-~~~~~v~~Ss~~~~~-------------------------   99 (369)
T 3st7_A           49 FIVHLAGVNRP--EHDK-EFSLGNVSYLDHVLDILTRNT-KKPAILLSSSIQATQ-------------------------   99 (369)
T ss_dssp             EEEECCCSBCT--TCST-TCSSSCCBHHHHHHHHHTTCS-SCCEEEEEEEGGGGS-------------------------
T ss_pred             EEEECCcCCCC--CCHH-HHHHHHHHHHHHHHHHHHHhC-CCCeEEEeCchhhcC-------------------------
Confidence            99999997653  2444 788899999999999999998 66 999999998873                         


Q ss_pred             CCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHH-hCCCcccccCCC-ccceeHHHHHH
Q 020104          164 WGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALI-LGNREEYGFLLN-TSMVHVDDVAR  241 (331)
Q Consensus       164 ~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~i~v~D~a~  241 (331)
                       .++|+.+|..+|++++.++++++++++++||+++||++..+.....+..+.... .+.+..+..+.. ++++|++|+|+
T Consensus       100 -~~~Y~~sK~~~E~~~~~~~~~~g~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~  178 (369)
T 3st7_A          100 -DNPYGESKLQGEQLLREYAEEYGNTVYIYRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQVNDRNVELTLNYVDDIVA  178 (369)
T ss_dssp             -CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSSCHHHHHHHHHHTTCCCCCSCTTCEEEEEEHHHHHH
T ss_pred             -CCCchHHHHHHHHHHHHHHHHhCCCEEEEECCceeCCCCCCCcchHHHHHHHHHHcCCCeEecCCCeEEEEEEHHHHHH
Confidence             247999999999999999998899999999999999987765444555555443 444444443444 79999999999


Q ss_pred             HHHHhhcCCCC--CceEEEe-ccccCHHHHHHHHHhhCCC---CCCCCccCCccccCCcCcccCcHHH-HHcCCccccCh
Q 020104          242 AHIFLLEYPDA--KGRYICS-SHTLTIQEMAEFLSAKYPE---YPIPTVDSLAEIEGYRAPGSSSKKL-LDAGFRYNYGI  314 (331)
Q Consensus       242 ~~~~~~~~~~~--~~~~~~~-~~~~s~~e~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~k~-~~lg~~~~~~~  314 (331)
                      +++.+++++..  +++||++ ++.+|+.|+++.+.+..|.   ...+.   .       ......... ..+||.|..++
T Consensus       179 ~~~~~l~~~~~~~~~~~~i~~~~~~s~~e~~~~~~~~~g~~~~~~~~~---~-------~~~~~~~l~~~~l~~~p~~~~  248 (369)
T 3st7_A          179 EIKRAIEGTPTIENGVPTVPNVFKVTLGEIVDLLYKFKQSRLDRTLPK---L-------DNLFEKDLYSTYLSYLPSTDF  248 (369)
T ss_dssp             HHHHHHHTCCCEETTEECCSCCEEEEHHHHHHHHHHHHHHHHHTCCCC---T-------TSHHHHHHHHHHHHTSCTTCS
T ss_pred             HHHHHHhCCcccCCceEEeCCCCceeHHHHHHHHHHHhCCCcccccCC---C-------CCHHHHHHHHHHhcccCCcce
Confidence            99999998877  6889875 5789999999999997761   11111   0       111111333 45899988777


Q ss_pred             hhhHH
Q 020104          315 DEMFD  319 (331)
Q Consensus       315 ~e~i~  319 (331)
                      +++++
T Consensus       249 ~~~l~  253 (369)
T 3st7_A          249 SYPLL  253 (369)
T ss_dssp             CCCCC
T ss_pred             eechh
Confidence            66543

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=100.00  E-value=2.8e-34  Score=246.83  Aligned_cols=257  Identities=16%  Similarity=0.154  Sum_probs=185.4

Q ss_pred             eEEEecCcchhHHHHHHHHHHC--CCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            7 RVCVTGGTGFIASWLIMRLLDH--GYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      +|||||||||||++++++|+++  |++|++++|++     .....+.   .     .+++++.+|+.|++++.++++++|
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~-----~~~~~~~---~-----~~~~~~~~D~~d~~~~~~~~~~~d   67 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNP-----AKAQALA---A-----QGITVRQADYGDEAALTSALQGVE   67 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCT-----TTCHHHH---H-----TTCEEEECCTTCHHHHHHHTTTCS
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcCh-----Hhhhhhh---c-----CCCeEEEcCCCCHHHHHHHHhCCC
Confidence            5999999999999999999998  99999999987     2222211   1     367899999999999999999999


Q ss_pred             EEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCCC
Q 020104           85 GVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSW  164 (331)
Q Consensus        85 ~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~  164 (331)
                      +|||+|+..      +     ..|+.++.+++++|++.+ +++|||+||.+++.            .             
T Consensus        68 ~vi~~a~~~------~-----~~~~~~~~~l~~a~~~~~-~~~~v~~Ss~~~~~------------~-------------  110 (286)
T 2zcu_A           68 KLLLISSSE------V-----GQRAPQHRNVINAAKAAG-VKFIAYTSLLHADT------------S-------------  110 (286)
T ss_dssp             EEEECC-------------------CHHHHHHHHHHHHT-CCEEEEEEETTTTT------------C-------------
T ss_pred             EEEEeCCCC------c-----hHHHHHHHHHHHHHHHcC-CCEEEEECCCCCCC------------C-------------
Confidence            999999852      1     147889999999999998 89999999987651            0             


Q ss_pred             CchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCC-ccceeHHHHHHHH
Q 020104          165 GKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLN-TSMVHVDDVARAH  243 (331)
Q Consensus       165 ~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~D~a~~~  243 (331)
                      ..+|+.+|..+|++++.    ++++++++||+.++++..     ..+.   .........++.+.. ++++|++|+|+++
T Consensus       111 ~~~y~~sK~~~e~~~~~----~~~~~~ilrp~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~i~~~Dva~~~  178 (286)
T 2zcu_A          111 PLGLADEHIETEKMLAD----SGIVYTLLRNGWYSENYL-----ASAP---AALEHGVFIGAAGDGKIASATRADYAAAA  178 (286)
T ss_dssp             CSTTHHHHHHHHHHHHH----HCSEEEEEEECCBHHHHH-----TTHH---HHHHHTEEEESCTTCCBCCBCHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHH----cCCCeEEEeChHHhhhhH-----HHhH---HhhcCCceeccCCCCccccccHHHHHHHH
Confidence            12699999999999865    589999999987666421     1111   122222223333333 7999999999999


Q ss_pred             HHhhcCCC-CCceEEEec-cccCHHHHHHHHHhhCCCC----CCCCccC--------Cccc-----------cCCcCccc
Q 020104          244 IFLLEYPD-AKGRYICSS-HTLTIQEMAEFLSAKYPEY----PIPTVDS--------LAEI-----------EGYRAPGS  298 (331)
Q Consensus       244 ~~~~~~~~-~~~~~~~~~-~~~s~~e~~~~i~~~~~~~----~~~~~~~--------~~~~-----------~~~~~~~~  298 (331)
                      +.++.++. .++.||+++ +.+|+.|+++.+.+.+|..    .+|....        .+..           ........
T Consensus       179 ~~~~~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (286)
T 2zcu_A          179 ARVISEAGHEGKVYELAGDSAWTLTQLAAELTKQSGKQVTYQNLSEADFAAALKSVGLPDGLADMLADSDVGASKGGLFD  258 (286)
T ss_dssp             HHHHHSSSCTTCEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHTTSSCCHHHHHHHHHHHHHHHTTTTCC
T ss_pred             HHHhcCCCCCCceEEEeCCCcCCHHHHHHHHHHHHCCCCceeeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCcc
Confidence            99998764 466899765 5899999999999988721    1221000        0000           00113556


Q ss_pred             CcHHH-HHcCCccccChhhhHHHHHHHHH
Q 020104          299 SSKKL-LDAGFRYNYGIDEMFDEAIQCCK  326 (331)
Q Consensus       299 ~~~k~-~~lg~~~~~~~~e~i~~~~~~~~  326 (331)
                      |++|+ +.|||.|. +++|+++++++||.
T Consensus       259 ~~~~~~~~lg~~~~-~~~e~l~~~~~~~~  286 (286)
T 2zcu_A          259 DSKTLSKLIGHPTT-TLAESVSHLFNVNN  286 (286)
T ss_dssp             CCCHHHHHHTSCCC-CHHHHHHGGGC---
T ss_pred             CchHHHHHhCcCCC-CHHHHHHHHHhhcC
Confidence            88999 77998655 99999999998873

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=100.00  E-value=6.6e-33  Score=235.78  Aligned_cols=213  Identities=19%  Similarity=0.197  Sum_probs=175.5

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      ||+||||||||+||++++++|+++|++|++++|+..     ...           ..+++++.+|+.|.+++.++++++|
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~-----~~~-----------~~~~~~~~~Dl~d~~~~~~~~~~~D   66 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPL-----DPA-----------GPNEECVQCDLADANAVNAMVAGCD   66 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCC-----CCC-----------CTTEEEEECCTTCHHHHHHHHTTCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCc-----ccc-----------CCCCEEEEcCCCCHHHHHHHHcCCC
Confidence            578999999999999999999999999999999872     211           2578999999999999999999999


Q ss_pred             EEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCCC
Q 020104           85 GVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSW  164 (331)
Q Consensus        85 ~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~  164 (331)
                      +|||+|+...  ..++. ..+++|+.++.++++++++.+ .++|||+||.++|+. .....+++|+.+         ..|
T Consensus        67 ~vi~~Ag~~~--~~~~~-~~~~~N~~g~~~l~~a~~~~~-~~~iv~~SS~~~~g~-~~~~~~~~e~~~---------~~~  132 (267)
T 3rft_A           67 GIVHLGGISV--EKPFE-QILQGNIIGLYNLYEAARAHG-QPRIVFASSNHTIGY-YPQTERLGPDVP---------ARP  132 (267)
T ss_dssp             EEEECCSCCS--CCCHH-HHHHHHTHHHHHHHHHHHHTT-CCEEEEEEEGGGGTT-SBTTSCBCTTSC---------CCC
T ss_pred             EEEECCCCcC--cCCHH-HHHHHHHHHHHHHHHHHHHcC-CCEEEEEcchHHhCC-CCCCCCCCCCCC---------CCC
Confidence            9999999743  23444 899999999999999999988 899999999999863 344567778774         356


Q ss_pred             CchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHHHHHHHHH
Q 020104          165 GKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHI  244 (331)
Q Consensus       165 ~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~  244 (331)
                      .+.|+.+|..+|.+++.++.+++++++++||+.++|+....                 ...     .+|+|++|+++++.
T Consensus       133 ~~~Y~~sK~~~e~~~~~~a~~~g~~~~~vr~~~v~~~~~~~-----------------~~~-----~~~~~~~d~a~~~~  190 (267)
T 3rft_A          133 DGLYGVSKCFGENLARMYFDKFGQETALVRIGSCTPEPNNY-----------------RML-----STWFSHDDFVSLIE  190 (267)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECBCSSSCCST-----------------THH-----HHBCCHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhCCeEEEEEeecccCCCCCC-----------------Cce-----eeEEcHHHHHHHHH
Confidence            77899999999999999998899999999999999873221                 001     37899999999999


Q ss_pred             HhhcCCCCCc-eEE-EeccccCHHHHH
Q 020104          245 FLLEYPDAKG-RYI-CSSHTLTIQEMA  269 (331)
Q Consensus       245 ~~~~~~~~~~-~~~-~~~~~~s~~e~~  269 (331)
                      .+++.+..++ +++ +++++.++.++.
T Consensus       191 ~~~~~~~~~~~~~~~~s~~~~~~~~~~  217 (267)
T 3rft_A          191 AVFRAPVLGCPVVWGASANDAGWWDNS  217 (267)
T ss_dssp             HHHHCSCCCSCEEEECCCCTTCCBCCG
T ss_pred             HHHhCCCCCceEEEEeCCCCCCcccCh
Confidence            9998877654 554 566666665553

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=100.00  E-value=9.7e-34  Score=233.94  Aligned_cols=210  Identities=16%  Similarity=0.181  Sum_probs=169.3

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCC-CccHHHHhcCcc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSH-PDGFDAAIAGCT   84 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~d   84 (331)
                      |+||||||||+||++++++|+++|++|++++|++     .....      .    .+++++.+|+.| .+++.++++++|
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~-----~~~~~------~----~~~~~~~~D~~d~~~~~~~~~~~~d   65 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKV-----EQVPQ------Y----NNVKAVHFDVDWTPEEMAKQLHGMD   65 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSG-----GGSCC------C----TTEEEEECCTTSCHHHHHTTTTTCS
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCc-----cchhh------c----CCceEEEecccCCHHHHHHHHcCCC
Confidence            4899999999999999999999999999999987     21111      1    578999999999 999999999999


Q ss_pred             EEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCCC
Q 020104           85 GVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSW  164 (331)
Q Consensus        85 ~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~  164 (331)
                      +|||+|+...      . ..+++|+.++.+++++|++.+ +++||++||.+++.     ..+..| +         +..|
T Consensus        66 ~vi~~ag~~~------~-~~~~~n~~~~~~l~~a~~~~~-~~~iv~~SS~~~~~-----~~~~~e-~---------~~~~  122 (219)
T 3dqp_A           66 AIINVSGSGG------K-SLLKVDLYGAVKLMQAAEKAE-VKRFILLSTIFSLQ-----PEKWIG-A---------GFDA  122 (219)
T ss_dssp             EEEECCCCTT------S-SCCCCCCHHHHHHHHHHHHTT-CCEEEEECCTTTTC-----GGGCCS-H---------HHHH
T ss_pred             EEEECCcCCC------C-CcEeEeHHHHHHHHHHHHHhC-CCEEEEECcccccC-----CCcccc-c---------cccc
Confidence            9999999754      1 467889999999999999998 89999999977653     123333 1         1234


Q ss_pred             CchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHHHHHHHHH
Q 020104          165 GKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHI  244 (331)
Q Consensus       165 ~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~  244 (331)
                      .+.|+.+|..+|++++   +..+++++++||+.+||+.......                ++ ...+++++++|+|++++
T Consensus       123 ~~~Y~~sK~~~e~~~~---~~~~i~~~ilrp~~v~g~~~~~~~~----------------~~-~~~~~~i~~~Dva~~i~  182 (219)
T 3dqp_A          123 LKDYYIAKHFADLYLT---KETNLDYTIIQPGALTEEEATGLID----------------IN-DEVSASNTIGDVADTIK  182 (219)
T ss_dssp             THHHHHHHHHHHHHHH---HSCCCEEEEEEECSEECSCCCSEEE----------------ES-SSCCCCEEHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHH---hccCCcEEEEeCceEecCCCCCccc----------------cC-CCcCCcccHHHHHHHHH
Confidence            6789999999999987   4579999999999999986443211                11 22269999999999999


Q ss_pred             HhhcCCCC-CceEEEeccccCHHHHHHHHH
Q 020104          245 FLLEYPDA-KGRYICSSHTLTIQEMAEFLS  273 (331)
Q Consensus       245 ~~~~~~~~-~~~~~~~~~~~s~~e~~~~i~  273 (331)
                      .++.++.. +++||++++..+++|+.+.-.
T Consensus       183 ~~l~~~~~~g~~~~i~~g~~~~~e~~~~~~  212 (219)
T 3dqp_A          183 ELVMTDHSIGKVISMHNGKTAIKEALESLL  212 (219)
T ss_dssp             HHHTCGGGTTEEEEEEECSEEHHHHHHTTT
T ss_pred             HHHhCccccCcEEEeCCCCccHHHHHHHHH
Confidence            99998765 568998766799999887543

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=100.00  E-value=6.7e-33  Score=231.57  Aligned_cols=213  Identities=21%  Similarity=0.228  Sum_probs=167.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcE-EEEeCCCCCCccHHHHhcC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERL-RIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~   82 (331)
                      ++|+||||||||+||++++++|+++|++|++++|++     +....+.   .     .++ +++.+|+.  +++.+++.+
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~-----~~~~~~~---~-----~~~~~~~~~Dl~--~~~~~~~~~   84 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE-----EQGPELR---E-----RGASDIVVANLE--EDFSHAFAS   84 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG-----GGHHHHH---H-----TTCSEEEECCTT--SCCGGGGTT
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh-----HHHHHHH---h-----CCCceEEEcccH--HHHHHHHcC
Confidence            467999999999999999999999999999999987     2322221   1     367 99999998  778888999


Q ss_pred             ccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcC
Q 020104           83 CTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLD  162 (331)
Q Consensus        83 ~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~  162 (331)
                      +|+|||+|+....  .++. ..+++|+.++.+++++|++.+ +++||++||...+.   .      +.++          
T Consensus        85 ~D~vi~~ag~~~~--~~~~-~~~~~n~~~~~~l~~a~~~~~-~~~iv~~SS~~~~~---~------~~~~----------  141 (236)
T 3e8x_A           85 IDAVVFAAGSGPH--TGAD-KTILIDLWGAIKTIQEAEKRG-IKRFIMVSSVGTVD---P------DQGP----------  141 (236)
T ss_dssp             CSEEEECCCCCTT--SCHH-HHHHTTTHHHHHHHHHHHHHT-CCEEEEECCTTCSC---G------GGSC----------
T ss_pred             CCEEEECCCCCCC--CCcc-ccchhhHHHHHHHHHHHHHcC-CCEEEEEecCCCCC---C------CCCh----------
Confidence            9999999997542  3455 899999999999999999998 89999999955431   1      1111          


Q ss_pred             CCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCC-CccceeHHHHHH
Q 020104          163 SWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLL-NTSMVHVDDVAR  241 (331)
Q Consensus       163 ~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~D~a~  241 (331)
                      .+.+.|+.+|..+|.+++    ..+++++++||+.++|+.......               ...... .++++|++|+|+
T Consensus       142 ~~~~~Y~~sK~~~e~~~~----~~gi~~~~lrpg~v~~~~~~~~~~---------------~~~~~~~~~~~i~~~Dva~  202 (236)
T 3e8x_A          142 MNMRHYLVAKRLADDELK----RSSLDYTIVRPGPLSNEESTGKVT---------------VSPHFSEITRSITRHDVAK  202 (236)
T ss_dssp             GGGHHHHHHHHHHHHHHH----HSSSEEEEEEECSEECSCCCSEEE---------------EESSCSCCCCCEEHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHH----HCCCCEEEEeCCcccCCCCCCeEE---------------eccCCCcccCcEeHHHHHH
Confidence            235689999999999886    479999999999999986433111               111111 268999999999


Q ss_pred             HHHHhhcCCC-CCceEEEeccccCHHHHHHHHH
Q 020104          242 AHIFLLEYPD-AKGRYICSSHTLTIQEMAEFLS  273 (331)
Q Consensus       242 ~~~~~~~~~~-~~~~~~~~~~~~s~~e~~~~i~  273 (331)
                      +++.+++++. .+++|+++++.+++.|+++.+.
T Consensus       203 ~~~~~~~~~~~~g~~~~v~~~~~~~~e~~~~i~  235 (236)
T 3e8x_A          203 VIAELVDQQHTIGKTFEVLNGDTPIAKVVEQLG  235 (236)
T ss_dssp             HHHHHTTCGGGTTEEEEEEECSEEHHHHHHTC-
T ss_pred             HHHHHhcCccccCCeEEEeCCCcCHHHHHHHhc
Confidence            9999999874 4568888666799999998764

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=100.00  E-value=9.5e-32  Score=231.42  Aligned_cols=256  Identities=15%  Similarity=0.181  Sum_probs=180.4

Q ss_pred             ceEEEecCcchhHHHHHHHHHHC-CCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDH-GYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      |+|||||||||||++++++|++. |++|++++|++     +....+   .     ..+++++.+|+.|++++.++++++|
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~-----~~~~~~---~-----~~~v~~~~~D~~d~~~l~~~~~~~d   67 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNV-----EKVPDD---W-----RGKVSVRQLDYFNQESMVEAFKGMD   67 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSG-----GGSCGG---G-----BTTBEEEECCTTCHHHHHHHTTTCS
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCH-----HHHHHh---h-----hCCCEEEEcCCCCHHHHHHHHhCCC
Confidence            47999999999999999999998 99999999987     222221   1     1578999999999999999999999


Q ss_pred             EEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCCC
Q 020104           85 GVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSW  164 (331)
Q Consensus        85 ~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~  164 (331)
                      +|||+|+....         ...|+.++.+++++|++.+ +++|||+||.+..           +..+          . 
T Consensus        68 ~vi~~a~~~~~---------~~~~~~~~~~l~~aa~~~g-v~~iv~~Ss~~~~-----------~~~~----------~-  115 (289)
T 3e48_A           68 TVVFIPSIIHP---------SFKRIPEVENLVYAAKQSG-VAHIIFIGYYADQ-----------HNNP----------F-  115 (289)
T ss_dssp             EEEECCCCCCS---------HHHHHHHHHHHHHHHHHTT-CCEEEEEEESCCS-----------TTCC----------S-
T ss_pred             EEEEeCCCCcc---------chhhHHHHHHHHHHHHHcC-CCEEEEEcccCCC-----------CCCC----------C-
Confidence            99999986431         1357899999999999999 9999999994321           0110          0 


Q ss_pred             CchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCC-ccceeHHHHHHHH
Q 020104          165 GKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLN-TSMVHVDDVARAH  243 (331)
Q Consensus       165 ~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~D~a~~~  243 (331)
                        .+...+..+|..+    .+.+++++++||+.++|+.        ...+..........++.+.. ++|+|++|+|+++
T Consensus       116 --~~~~~~~~~e~~~----~~~g~~~~ilrp~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~~~i~~~Dva~~~  181 (289)
T 3e48_A          116 --HMSPYFGYASRLL----STSGIDYTYVRMAMYMDPL--------KPYLPELMNMHKLIYPAGDGRINYITRNDIARGV  181 (289)
T ss_dssp             --TTHHHHHHHHHHH----HHHCCEEEEEEECEESTTH--------HHHHHHHHHHTEECCCCTTCEEEEECHHHHHHHH
T ss_pred             --ccchhHHHHHHHH----HHcCCCEEEEecccccccc--------HHHHHHHHHCCCEecCCCCceeeeEEHHHHHHHH
Confidence              1112222344443    3468999999999999873        11122222233333444333 7899999999999


Q ss_pred             HHhhcCCCC-CceEEEeccccCHHHHHHHHHhhCCCC----CCCCccC---------Cccc-------cCCcCcccCcHH
Q 020104          244 IFLLEYPDA-KGRYICSSHTLTIQEMAEFLSAKYPEY----PIPTVDS---------LAEI-------EGYRAPGSSSKK  302 (331)
Q Consensus       244 ~~~~~~~~~-~~~~~~~~~~~s~~e~~~~i~~~~~~~----~~~~~~~---------~~~~-------~~~~~~~~~~~k  302 (331)
                      +.++.++.. +++|+++++.+|+.|+++.+.+.+|..    .++....         +...       ..........+.
T Consensus       182 ~~~l~~~~~~g~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~  261 (289)
T 3e48_A          182 IAIIKNPDTWGKRYLLSGYSYDMKELAAILSEASGTEIKYEPVSLETFAEMYDEPKGFGALLASMYHAGARGLLDQESND  261 (289)
T ss_dssp             HHHHHCGGGTTCEEEECCEEEEHHHHHHHHHHHHTSCCEECCCCHHHHHHHTCCSTTHHHHHHHHHHHHHTTTTCCCCSH
T ss_pred             HHHHcCCCcCCceEEeCCCcCCHHHHHHHHHHHHCCceeEEeCCHHHHHHHhcCCccHHHHHHHHHHHHHCCCccccCch
Confidence            999988765 668987788899999999999988721    1211000         0000       001223345566


Q ss_pred             H-HHcCCccccChhhhHHHH
Q 020104          303 L-LDAGFRYNYGIDEMFDEA  321 (331)
Q Consensus       303 ~-~~lg~~~~~~~~e~i~~~  321 (331)
                      + +.+|++|+ +++|-+++.
T Consensus       262 ~~~~~G~~p~-~~~~~~~~~  280 (289)
T 3e48_A          262 FKQLVNDQPQ-TLQSFLQEN  280 (289)
T ss_dssp             HHHHHSSCCC-CHHHHHHC-
T ss_pred             HHHHhCCCCC-CHHHHHHHH
Confidence            6 88999999 998877764

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=99.98  E-value=9.2e-33  Score=227.38  Aligned_cols=207  Identities=20%  Similarity=0.118  Sum_probs=159.7

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHH
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGY--SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDA   78 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~   78 (331)
                      |+.|+|+|+||||||+||++++++|+++|+  +|++++|++.     .            ..++++++.+|+.|.+++.+
T Consensus         1 M~~~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~-----~------------~~~~~~~~~~D~~~~~~~~~   63 (215)
T 2a35_A            1 MHSTPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKAL-----A------------EHPRLDNPVGPLAELLPQLD   63 (215)
T ss_dssp             ---CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCC-----C------------CCTTEECCBSCHHHHGGGCC
T ss_pred             CCCCCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCc-----c------------cCCCceEEeccccCHHHHHH
Confidence            666678999999999999999999999998  9999999872     1            01478889999999888887


Q ss_pred             HhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhh
Q 020104           79 AIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYI  158 (331)
Q Consensus        79 ~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~  158 (331)
                      ++  +|+|||+|+.......++. ..+++|+.++.++++++++.+ +++||++||.++++                    
T Consensus        64 ~~--~d~vi~~a~~~~~~~~~~~-~~~~~n~~~~~~l~~~~~~~~-~~~~v~~Ss~~~~~--------------------  119 (215)
T 2a35_A           64 GS--IDTAFCCLGTTIKEAGSEE-AFRAVDFDLPLAVGKRALEMG-ARHYLVVSALGADA--------------------  119 (215)
T ss_dssp             SC--CSEEEECCCCCHHHHSSHH-HHHHHHTHHHHHHHHHHHHTT-CCEEEEECCTTCCT--------------------
T ss_pred             hh--hcEEEECeeeccccCCCHH-HHHHhhHHHHHHHHHHHHHcC-CCEEEEECCcccCC--------------------
Confidence            77  9999999986543233454 889999999999999999988 89999999988873                    


Q ss_pred             hhcCCCCchhHhhHHHHHHHHHHHHHHcCCc-EEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHH
Q 020104          159 RKLDSWGKSYAISKTLTERAALEFAEEHGLD-LVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVD  237 (331)
Q Consensus       159 ~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~-~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~  237 (331)
                          .|.+.|+.+|..+|++++.    .+++ ++++||+.+||+......   ...+    .+....+.. +.++++|++
T Consensus       120 ----~~~~~y~~sK~~~e~~~~~----~~~~~~~~vrp~~v~g~~~~~~~---~~~~----~~~~~~~~~-~~~~~i~~~  183 (215)
T 2a35_A          120 ----KSSIFYNRVKGELEQALQE----QGWPQLTIARPSLLFGPREEFRL---AEIL----AAPIARILP-GKYHGIEAC  183 (215)
T ss_dssp             ----TCSSHHHHHHHHHHHHHTT----SCCSEEEEEECCSEESTTSCEEG---GGGT----TCCCC-----CHHHHHHHH
T ss_pred             ----CCccHHHHHHHHHHHHHHH----cCCCeEEEEeCceeeCCCCcchH---HHHH----HHhhhhccC-CCcCcEeHH
Confidence                1245799999999999876    5899 999999999999754211   1110    111111221 136899999


Q ss_pred             HHHHHHHHhhcCCCCCceEEEec-cccCH
Q 020104          238 DVARAHIFLLEYPDAKGRYICSS-HTLTI  265 (331)
Q Consensus       238 D~a~~~~~~~~~~~~~~~~~~~~-~~~s~  265 (331)
                      |+|++++.+++++. ++.||+++ +.+++
T Consensus       184 Dva~~~~~~~~~~~-~~~~~i~~~~~~~~  211 (215)
T 2a35_A          184 DLARALWRLALEEG-KGVRFVESDELRKL  211 (215)
T ss_dssp             HHHHHHHHHHTCCC-SEEEEEEHHHHHHH
T ss_pred             HHHHHHHHHHhcCC-CCceEEcHHHHHHh
Confidence            99999999998875 78898765 44444

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=99.97  E-value=3.4e-31  Score=219.44  Aligned_cols=217  Identities=13%  Similarity=0.020  Sum_probs=157.8

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCccE
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTG   85 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~   85 (331)
                      |||||||||||||++++++|+++|++|++++|++     ..   ...+.     ..+++++.+|+.|.++  +.+.++|+
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~-----~~---~~~~~-----~~~~~~~~~D~~d~~~--~~~~~~d~   65 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP-----QK---AADRL-----GATVATLVKEPLVLTE--ADLDSVDA   65 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH-----HH---HHHHT-----CTTSEEEECCGGGCCH--HHHTTCSE
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc-----cc---ccccc-----CCCceEEecccccccH--hhcccCCE
Confidence            4799999999999999999999999999999987     22   22211     1478999999999987  78889999


Q ss_pred             EEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCC-CCcccCCCCCChhhhhhcCCC
Q 020104           86 VLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKD-VDMMDETFWSDVDYIRKLDSW  164 (331)
Q Consensus        86 Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~-~~~~~E~~~~~~~~~~~~~~~  164 (331)
                      |||+|+... . .    ...+.|+.++.+++++|++.+  +++|++||.++++..... ..+.+|+.+         +.|
T Consensus        66 vi~~ag~~~-~-~----~~~~~n~~~~~~l~~a~~~~~--~~~v~~SS~~~~~~~~~~~~~~~~~~~~---------~~~  128 (224)
T 3h2s_A           66 VVDALSVPW-G-S----GRGYLHLDFATHLVSLLRNSD--TLAVFILGSASLAMPGADHPMILDFPES---------AAS  128 (224)
T ss_dssp             EEECCCCCT-T-S----SCTHHHHHHHHHHHHTCTTCC--CEEEEECCGGGSBCTTCSSCGGGGCCGG---------GGG
T ss_pred             EEECCccCC-C-c----chhhHHHHHHHHHHHHHHHcC--CcEEEEecceeeccCCCCccccccCCCC---------Ccc
Confidence            999999752 1 1    235789999999999999988  799999998766532221 123333331         234


Q ss_pred             CchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHHHHHHHHH
Q 020104          165 GKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHI  244 (331)
Q Consensus       165 ~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~  244 (331)
                      .+.|+.+|..+|. +..+.++.+++++++||+.+||++.... . .        .+...........+++|++|+|++++
T Consensus       129 ~~~y~~sK~~~e~-~~~~~~~~~i~~~ivrp~~v~g~~~~~~-~-~--------~~~~~~~~~~~~~~~i~~~DvA~~~~  197 (224)
T 3h2s_A          129 QPWYDGALYQYYE-YQFLQMNANVNWIGISPSEAFPSGPATS-Y-V--------AGKDTLLVGEDGQSHITTGNMALAIL  197 (224)
T ss_dssp             STTHHHHHHHHHH-HHHHTTCTTSCEEEEEECSBCCCCCCCC-E-E--------EESSBCCCCTTSCCBCCHHHHHHHHH
T ss_pred             chhhHHHHHHHHH-HHHHHhcCCCcEEEEcCccccCCCcccC-c-e--------ecccccccCCCCCceEeHHHHHHHHH
Confidence            6789999999994 4555556799999999999999954322 0 0        11111111222368999999999999


Q ss_pred             HhhcCCCC-CceEEEec-cccCH
Q 020104          245 FLLEYPDA-KGRYICSS-HTLTI  265 (331)
Q Consensus       245 ~~~~~~~~-~~~~~~~~-~~~s~  265 (331)
                      .+++++.. +++|++++ ++.++
T Consensus       198 ~~l~~~~~~g~~~~~~~~~~~~~  220 (224)
T 3h2s_A          198 DQLEHPTAIRDRIVVRDADLEHH  220 (224)
T ss_dssp             HHHHSCCCTTSEEEEEECC----
T ss_pred             HHhcCccccCCEEEEecCcchhc
Confidence            99998765 66888654 44443

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=99.97  E-value=4.6e-32  Score=239.32  Aligned_cols=276  Identities=19%  Similarity=0.161  Sum_probs=187.6

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--C
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--G   82 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~   82 (331)
                      +|+|||||||||||++++++|++.|++|++++|++.    ....+...+..+.  ..+++++.+|+.|.+++.++++  +
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~----~~~~~~~~~~~l~--~~~v~~~~~Dl~d~~~l~~~~~~~~   83 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPGP----RSPSKAKIFKALE--DKGAIIVYGLINEQEAMEKILKEHE   83 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSC----CCHHHHHHHHHHH--HTTCEEEECCTTCHHHHHHHHHHTT
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCC----CChhHHHHHHHHH--hCCcEEEEeecCCHHHHHHHHhhCC
Confidence            368999999999999999999999999999999862    1112222111111  1578999999999999999999  9


Q ss_pred             ccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcC
Q 020104           83 CTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLD  162 (331)
Q Consensus        83 ~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~  162 (331)
                      +|+|||+|+..              |+.++.+++++|++.+.+++||+ |+   |+      .+.+|+++         .
T Consensus        84 ~d~Vi~~a~~~--------------n~~~~~~l~~aa~~~g~v~~~v~-S~---~g------~~~~e~~~---------~  130 (346)
T 3i6i_A           84 IDIVVSTVGGE--------------SILDQIALVKAMKAVGTIKRFLP-SE---FG------HDVNRADP---------V  130 (346)
T ss_dssp             CCEEEECCCGG--------------GGGGHHHHHHHHHHHCCCSEEEC-SC---CS------SCTTTCCC---------C
T ss_pred             CCEEEECCchh--------------hHHHHHHHHHHHHHcCCceEEee-cc---cC------CCCCccCc---------C
Confidence            99999999852              66778999999999876788886 43   43      12344432         2


Q ss_pred             CCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC-cccccCCC-ccceeHHHHH
Q 020104          163 SWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR-EEYGFLLN-TSMVHVDDVA  240 (331)
Q Consensus       163 ~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~i~v~D~a  240 (331)
                      .|.+.|+.+|..+|++++.    ++++++++||+.++|......    .........+.. ..++.+.. ++|+|++|+|
T Consensus       131 ~p~~~y~~sK~~~e~~l~~----~g~~~tivrpg~~~g~~~~~~----~~~~~~~~~~~~~~~~g~g~~~~~~i~~~Dva  202 (346)
T 3i6i_A          131 EPGLNMYREKRRVRQLVEE----SGIPFTYICCNSIASWPYYNN----IHPSEVLPPTDFFQIYGDGNVKAYFVAGTDIG  202 (346)
T ss_dssp             TTHHHHHHHHHHHHHHHHH----TTCCBEEEECCEESSCCCSCC---------CCCCSSCEEEETTSCCCEEEECHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHH----cCCCEEEEEecccccccCccc----cccccccCCCceEEEccCCCceEEecCHHHHH
Confidence            4567899999999998876    689999999999999753321    111100001122 23334433 7999999999


Q ss_pred             HHHHHhhcCCCC-CceEEEe--ccccCHHHHHHHHHhhCCCC-CCCCc--cCC-cccc-C-----------------CcC
Q 020104          241 RAHIFLLEYPDA-KGRYICS--SHTLTIQEMAEFLSAKYPEY-PIPTV--DSL-AEIE-G-----------------YRA  295 (331)
Q Consensus       241 ~~~~~~~~~~~~-~~~~~~~--~~~~s~~e~~~~i~~~~~~~-~~~~~--~~~-~~~~-~-----------------~~~  295 (331)
                      ++++.++.++.. ++.|++.  ++.+|+.|+++.+.+.+|.. .+...  ..+ .... .                 ...
T Consensus       203 ~~~~~~l~~~~~~~~~~~i~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~  282 (346)
T 3i6i_A          203 KFTMKTVDDVRTLNKSVHFRPSCNCLNINELASVWEKKIGRTLPRVTVTEDDLLAAAGENIIPQSVVAAFTHDIFIKGCQ  282 (346)
T ss_dssp             HHHHHHTTCGGGTTEEEECCCGGGEECHHHHHHHHHHHHTSCCCEEEECHHHHHHHHHTCCTTHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHhCccccCeEEEEeCCCCCCCHHHHHHHHHHHHCCCCceEecCHHHHHHHHhcCCChhhhHHHHHHHHhccCCC
Confidence            999999998754 5677754  57899999999999988722 11110  000 0000 0                 000


Q ss_pred             cccCc-----HHH-HH-cCCccccChhhhHHHHHHHHHHc
Q 020104          296 PGSSS-----KKL-LD-AGFRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       296 ~~~~~-----~k~-~~-lg~~~~~~~~e~i~~~~~~~~~~  328 (331)
                      ..++.     .++ +. -+++++ +++|.++++++|++++
T Consensus       283 ~~~~~~~~~~~~~~~~~p~~~~t-~~~e~l~~~~~~~~~~  321 (346)
T 3i6i_A          283 VNFSIDGPEDVEVTTLYPEDSFR-TVEECFGEYIVKMEEK  321 (346)
T ss_dssp             TSSCCCSTTEEEHHHHSTTCCCC-CHHHHHHHHHCC----
T ss_pred             cccccCCCCcccHHHhCCCCCcC-cHHHHHHHHHHHhhcc
Confidence            11222     224 33 378887 9999999999988764

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=99.97  E-value=2.1e-31  Score=220.19  Aligned_cols=217  Identities=13%  Similarity=0.135  Sum_probs=144.4

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCccE
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTG   85 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~   85 (331)
                      ||||||||||+||++++++|+++|++|++++|++     +.   ...+.      ++++++.+|+.|.++  +.+.++|+
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~-----~~---~~~~~------~~~~~~~~D~~d~~~--~~~~~~d~   64 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA-----GK---ITQTH------KDINILQKDIFDLTL--SDLSDQNV   64 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS-----HH---HHHHC------SSSEEEECCGGGCCH--HHHTTCSE
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc-----hh---hhhcc------CCCeEEeccccChhh--hhhcCCCE
Confidence            4899999999999999999999999999999987     22   22111      468999999999987  78889999


Q ss_pred             EEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCCCC
Q 020104           86 VLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWG  165 (331)
Q Consensus        86 Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~  165 (331)
                      |||+|+...        ...+.|+.++++++++|++.+ ++++|++||..+++. .....+..|+++         ..|.
T Consensus        65 vi~~ag~~~--------~~~~~~~~~~~~l~~a~~~~~-~~~~v~~SS~~~~~~-~~~~~~~~~~~~---------~~~~  125 (221)
T 3ew7_A           65 VVDAYGISP--------DEAEKHVTSLDHLISVLNGTV-SPRLLVVGGAASLQI-DEDGNTLLESKG---------LREA  125 (221)
T ss_dssp             EEECCCSST--------TTTTSHHHHHHHHHHHHCSCC-SSEEEEECCCC-----------------------------C
T ss_pred             EEECCcCCc--------cccchHHHHHHHHHHHHHhcC-CceEEEEecceEEEc-CCCCccccccCC---------CCCH
Confidence            999999732        234678999999999999998 899999999887752 233334444442         2345


Q ss_pred             chhHhhHHHHHHHHHHHHH-HcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHHHHHHHHH
Q 020104          166 KSYAISKTLTERAALEFAE-EHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHI  244 (331)
Q Consensus       166 ~~Y~~~K~~~e~~~~~~~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~  244 (331)
                      +.|+.+|..+|.+ ..+.. .++++++++||+.+||++.....   +.     ..+...... ....+++|++|+|++++
T Consensus       126 ~~y~~~k~~~e~~-~~~~~~~~gi~~~ivrp~~v~g~~~~~~~---~~-----~~~~~~~~~-~~~~~~i~~~Dva~~~~  195 (221)
T 3ew7_A          126 PYYPTARAQAKQL-EHLKSHQAEFSWTYISPSAMFEPGERTGD---YQ-----IGKDHLLFG-SDGNSFISMEDYAIAVL  195 (221)
T ss_dssp             CCSCCHHHHHHHH-HHHHTTTTTSCEEEEECSSCCCCC------------------------------CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HHHHhhccCccEEEEeCcceecCCCccCc---eE-----eccccceec-CCCCceEeHHHHHHHHH
Confidence            6799999999986 33333 57999999999999998432111   00     011111111 11137999999999999


Q ss_pred             HhhcCCCC-CceEEEec-cccCHHH
Q 020104          245 FLLEYPDA-KGRYICSS-HTLTIQE  267 (331)
Q Consensus       245 ~~~~~~~~-~~~~~~~~-~~~s~~e  267 (331)
                      .+++++.. +..||+++ ...+..|
T Consensus       196 ~~l~~~~~~g~~~~~~~~~~~~~~~  220 (221)
T 3ew7_A          196 DEIERPNHLNEHFTVAGKLEHHHHH  220 (221)
T ss_dssp             HHHHSCSCTTSEEECCC--------
T ss_pred             HHHhCccccCCEEEECCCCcccccc
Confidence            99998765 66898654 4555443

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=99.97  E-value=8.6e-31  Score=220.92  Aligned_cols=229  Identities=17%  Similarity=0.192  Sum_probs=169.5

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHC--CCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDH--GYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      .++|+||||||||+||++++++|+++  |++|++++|++     ...   ..+      ..+++++.+|+.|.+++.+++
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~-----~~~---~~~------~~~~~~~~~D~~d~~~~~~~~   67 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSA-----QGK---EKI------GGEADVFIGDITDADSINPAF   67 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCH-----HHH---HHT------TCCTTEEECCTTSHHHHHHHH
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCC-----Cch---hhc------CCCeeEEEecCCCHHHHHHHH
Confidence            34679999999999999999999999  89999999986     221   111      145778999999999999999


Q ss_pred             cCccEEEEecccCCCC--------CCChh------hHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCc
Q 020104           81 AGCTGVLHVATPVDFE--------DKEPE------EVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        81 ~~~d~Vih~a~~~~~~--------~~~~~------~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                      +++|+|||+|+.....        ..++.      ...+++|+.++.++++++++.+ +++||++||.+++.   . ..+
T Consensus        68 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~iv~~SS~~~~~---~-~~~  142 (253)
T 1xq6_A           68 QGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAG-VKHIVVVGSMGGTN---P-DHP  142 (253)
T ss_dssp             TTCSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHT-CSEEEEEEETTTTC---T-TCG
T ss_pred             cCCCEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcC-CCEEEEEcCccCCC---C-CCc
Confidence            9999999999864311        01111      1457999999999999999998 89999999987641   1 001


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccc
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYG  226 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (331)
                      ...             ...+.|+.+|..+|.+++.    ++++++++||+.+||+.....  ..+       .+....+.
T Consensus       143 ~~~-------------~~~~~y~~sK~~~e~~~~~----~~i~~~~vrpg~v~~~~~~~~--~~~-------~~~~~~~~  196 (253)
T 1xq6_A          143 LNK-------------LGNGNILVWKRKAEQYLAD----SGTPYTIIRAGGLLDKEGGVR--ELL-------VGKDDELL  196 (253)
T ss_dssp             GGG-------------GGGCCHHHHHHHHHHHHHT----SSSCEEEEEECEEECSCSSSS--CEE-------EESTTGGG
T ss_pred             ccc-------------ccchhHHHHHHHHHHHHHh----CCCceEEEecceeecCCcchh--hhh-------ccCCcCCc
Confidence            100             0113478899999998864    689999999999999864321  111       01111111


Q ss_pred             cCCCccceeHHHHHHHHHHhhcCCCC-CceEEEec----cccCHHHHHHHHHhhCC
Q 020104          227 FLLNTSMVHVDDVARAHIFLLEYPDA-KGRYICSS----HTLTIQEMAEFLSAKYP  277 (331)
Q Consensus       227 ~~~~~~~i~v~D~a~~~~~~~~~~~~-~~~~~~~~----~~~s~~e~~~~i~~~~~  277 (331)
                       ....+++|++|+|++++.+++++.. +++||+++    +.+|+.|+++.+.+.+|
T Consensus       197 -~~~~~~~~~~Dva~~~~~~~~~~~~~g~~~~i~~~~~~~~~s~~e~~~~~~~~~g  251 (253)
T 1xq6_A          197 -QTDTKTVPRADVAEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKDFKALFSQVTS  251 (253)
T ss_dssp             -GSSCCEEEHHHHHHHHHHHTTCGGGTTEEEEEEECCTTTSCCCCCHHHHHHTCCC
T ss_pred             -CCCCcEEcHHHHHHHHHHHHcCccccCCEEEecCCCcCCCCCHHHHHHHHHHHhC
Confidence             1225799999999999999987654 55888754    35999999999998776

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=99.97  E-value=2.7e-30  Score=223.46  Aligned_cols=268  Identities=15%  Similarity=0.130  Sum_probs=188.6

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      +|+||||||||+||++++++|+++| ++|++++|++     .... ...+..     .+++++.+|+.|++++.++++++
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~-----~~~~-~~~l~~-----~~~~~~~~D~~d~~~l~~~~~~~   73 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNP-----RKKA-AKELRL-----QGAEVVQGDQDDQVIMELALNGA   73 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCT-----TSHH-HHHHHH-----TTCEEEECCTTCHHHHHHHHTTC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCC-----CCHH-HHHHHH-----CCCEEEEecCCCHHHHHHHHhcC
Confidence            4789999999999999999999998 9999999987     2211 111111     46889999999999999999999


Q ss_pred             cEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCC
Q 020104           84 TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDS  163 (331)
Q Consensus        84 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~  163 (331)
                      |+|||+++....       ...+.|+.++.+++++|++.+ +++||++||..++...        +.            .
T Consensus        74 d~vi~~a~~~~~-------~~~~~~~~~~~~~~~aa~~~g-v~~iv~~S~~~~~~~~--------~~------------~  125 (299)
T 2wm3_A           74 YATFIVTNYWES-------CSQEQEVKQGKLLADLARRLG-LHYVVYSGLENIKKLT--------AG------------R  125 (299)
T ss_dssp             SEEEECCCHHHH-------TCHHHHHHHHHHHHHHHHHHT-CSEEEECCCCCHHHHT--------TT------------S
T ss_pred             CEEEEeCCCCcc-------ccchHHHHHHHHHHHHHHHcC-CCEEEEEcCccccccC--------CC------------c
Confidence            999999974321       124567889999999999998 8999998887766311        11            1


Q ss_pred             CCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC--cccccCCC-ccceeHHHHH
Q 020104          164 WGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR--EEYGFLLN-TSMVHVDDVA  240 (331)
Q Consensus       164 ~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~i~v~D~a  240 (331)
                      +.++|+.+|..+|++++.    ++++++++||+.+||+..........      ..+..  ..++.+.. ++|+|++|+|
T Consensus       126 ~~~~y~~sK~~~e~~~~~----~gi~~~ilrp~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~~~~~i~~~Dva  195 (299)
T 2wm3_A          126 LAAAHFDGKGEVEEYFRD----IGVPMTSVRLPCYFENLLSHFLPQKA------PDGKSYLLSLPTGDVPMDGMSVSDLG  195 (299)
T ss_dssp             CCCHHHHHHHHHHHHHHH----HTCCEEEEECCEEGGGGGTTTCCEEC------TTSSSEEECCCCTTSCEEEECGGGHH
T ss_pred             ccCchhhHHHHHHHHHHH----CCCCEEEEeecHHhhhchhhcCCccc------CCCCEEEEEecCCCCccceecHHHHH
Confidence            235799999999999875    58999999999999974321111100      01211  11222222 6999999999


Q ss_pred             HHHHHhhcCCC--CCceEEEeccccCHHHHHHHHHhhCCC----CCCCCccC----Ccc---c---c-CCcCcccCcHHH
Q 020104          241 RAHIFLLEYPD--AKGRYICSSHTLTIQEMAEFLSAKYPE----YPIPTVDS----LAE---I---E-GYRAPGSSSKKL  303 (331)
Q Consensus       241 ~~~~~~~~~~~--~~~~~~~~~~~~s~~e~~~~i~~~~~~----~~~~~~~~----~~~---~---~-~~~~~~~~~~k~  303 (331)
                      ++++.++.++.  .+..|+++++.+|+.|+++.+.+.+|.    ..++....    ++.   .   . ............
T Consensus       196 ~~~~~~l~~~~~~~g~~~~~~g~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  275 (299)
T 2wm3_A          196 PVVLSLLKMPEKYVGQNIGLSTCRHTAEEYAALLTKHTRKVVHDAKMTPEDYEKLGFPGARDLANMFRFYALRPDRDIEL  275 (299)
T ss_dssp             HHHHHHHHSHHHHTTCEEECCSEEECHHHHHHHHHHHHSSCEEECCCCTHHHHTTCSTTHHHHHHHHHHHTTCCCCCHHH
T ss_pred             HHHHHHHcChhhhCCeEEEeeeccCCHHHHHHHHHHHHCCCceeEecCHHHHHhcCCCcHHHHHHHHHHHHhcCCCCHHH
Confidence            99999998752  466899888889999999999998772    12222100    000   0   0 000001122334


Q ss_pred             -HHcCCccccChhhhHHHHH
Q 020104          304 -LDAGFRYNYGIDEMFDEAI  322 (331)
Q Consensus       304 -~~lg~~~~~~~~e~i~~~~  322 (331)
                       +.+|-.|+ +++|.+++..
T Consensus       276 ~~~~g~~~~-~~~~~~~~~~  294 (299)
T 2wm3_A          276 TLRLNPKAL-TLDQWLEQHK  294 (299)
T ss_dssp             HHHHCTTCC-CHHHHHHHHG
T ss_pred             HHHhCCCCC-CHHHHHHhCh
Confidence             77888887 9999888754

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=99.97  E-value=2.1e-29  Score=211.10  Aligned_cols=207  Identities=17%  Similarity=0.107  Sum_probs=158.8

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY--SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      +|+||||||||+||++++++|+++|+  +|++++|++.     ......        ..++.++.+|+.|.+++.+++++
T Consensus        18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~-----~~~~~~--------~~~~~~~~~D~~d~~~~~~~~~~   84 (242)
T 2bka_A           18 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKL-----TFDEEA--------YKNVNQEVVDFEKLDDYASAFQG   84 (242)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCC-----CCCSGG--------GGGCEEEECCGGGGGGGGGGGSS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCC-----Cccccc--------cCCceEEecCcCCHHHHHHHhcC
Confidence            46899999999999999999999999  9999999872     221111        13678899999999999999999


Q ss_pred             ccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcC
Q 020104           83 CTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLD  162 (331)
Q Consensus        83 ~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~  162 (331)
                      +|+|||+|+..... .++ +..+++|+.++.++++++++.+ +++||++||.++|+                        
T Consensus        85 ~d~vi~~ag~~~~~-~~~-~~~~~~n~~~~~~~~~~~~~~~-~~~iv~~SS~~~~~------------------------  137 (242)
T 2bka_A           85 HDVGFCCLGTTRGK-AGA-EGFVRVDRDYVLKSAELAKAGG-CKHFNLLSSKGADK------------------------  137 (242)
T ss_dssp             CSEEEECCCCCHHH-HHH-HHHHHHHTHHHHHHHHHHHHTT-CCEEEEECCTTCCT------------------------
T ss_pred             CCEEEECCCccccc-CCc-ccceeeeHHHHHHHHHHHHHCC-CCEEEEEccCcCCC------------------------
Confidence            99999999864321 123 3788999999999999999988 88999999988773                        


Q ss_pred             CCCchhHhhHHHHHHHHHHHHHHcCC-cEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHHHHHH
Q 020104          163 SWGKSYAISKTLTERAALEFAEEHGL-DLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVAR  241 (331)
Q Consensus       163 ~~~~~Y~~~K~~~e~~~~~~~~~~~~-~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~  241 (331)
                      .+.++|+.+|..+|.+++.    .++ +++++||+.+||+.....   .............+.  ..+...+++++|+|+
T Consensus       138 ~~~~~Y~~sK~~~e~~~~~----~~~~~~~~vrpg~v~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~dva~  208 (242)
T 2bka_A          138 SSNFLYLQVKGEVEAKVEE----LKFDRYSVFRPGVLLCDRQESR---PGEWLVRKFFGSLPD--SWASGHSVPVVTVVR  208 (242)
T ss_dssp             TCSSHHHHHHHHHHHHHHT----TCCSEEEEEECCEEECTTGGGS---HHHHHHHHHHCSCCT--TGGGGTEEEHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHh----cCCCCeEEEcCceecCCCCCCc---HHHHHHHHhhcccCc--cccCCcccCHHHHHH
Confidence            1134799999999998875    468 699999999999964321   112222222222111  111247999999999


Q ss_pred             HHHHhhcCCCCCceEEEec
Q 020104          242 AHIFLLEYPDAKGRYICSS  260 (331)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~  260 (331)
                      +++.++.++...+.+++++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~  227 (242)
T 2bka_A          209 AMLNNVVRPRDKQMELLEN  227 (242)
T ss_dssp             HHHHHHTSCCCSSEEEEEH
T ss_pred             HHHHHHhCccccCeeEeeH
Confidence            9999999887778777654

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=99.96  E-value=1.6e-28  Score=200.58  Aligned_cols=199  Identities=16%  Similarity=0.163  Sum_probs=151.8

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCccE
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTG   85 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~   85 (331)
                      |+|+||||||+||++++++|+++|++|++++|++.     ....   +     ...+++++.+|+.|++++.++++++|+
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~-----~~~~---~-----~~~~~~~~~~D~~~~~~~~~~~~~~d~   70 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS-----RLPS---E-----GPRPAHVVVGDVLQAADVDKTVAGQDA   70 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG-----GSCS---S-----SCCCSEEEESCTTSHHHHHHHHTTCSE
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChh-----hccc---c-----cCCceEEEEecCCCHHHHHHHHcCCCE
Confidence            68999999999999999999999999999999872     1111   1     025789999999999999999999999


Q ss_pred             EEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCCCC
Q 020104           86 VLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWG  165 (331)
Q Consensus        86 Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~  165 (331)
                      |||+|+....  .++    .++|+.++.++++++++.+ +++||++||.++|+..  ...                +.+.
T Consensus        71 vi~~a~~~~~--~~~----~~~n~~~~~~~~~~~~~~~-~~~~v~~Ss~~~~~~~--~~~----------------~~~~  125 (206)
T 1hdo_A           71 VIVLLGTRND--LSP----TTVMSEGARNIVAAMKAHG-VDKVVACTSAFLLWDP--TKV----------------PPRL  125 (206)
T ss_dssp             EEECCCCTTC--CSC----CCHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTSCT--TCS----------------CGGG
T ss_pred             EEECccCCCC--CCc----cchHHHHHHHHHHHHHHhC-CCeEEEEeeeeeccCc--ccc----------------cccc
Confidence            9999986543  122    2588999999999999998 8999999999887421  110                0135


Q ss_pred             chhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCC-CCCCccHHHHHHHHhCCCcccccCCCccceeHHHHHHHHH
Q 020104          166 KSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFIC-PKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHI  244 (331)
Q Consensus       166 ~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~  244 (331)
                      +.|+.+|..+|.+++.    .+++++++||+.++ ++.. ......+        ..     ... .+++|++|+|++++
T Consensus       126 ~~y~~~K~~~e~~~~~----~~i~~~~lrp~~~~-~~~~~~~~~~~~--------~~-----~~~-~~~i~~~Dva~~~~  186 (206)
T 1hdo_A          126 QAVTDDHIRMHKVLRE----SGLKYVAVMPPHIG-DQPLTGAYTVTL--------DG-----RGP-SRVISKHDLGHFML  186 (206)
T ss_dssp             HHHHHHHHHHHHHHHH----TCSEEEEECCSEEE-CCCCCSCCEEES--------SS-----CSS-CSEEEHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHh----CCCCEEEEeCCccc-CCCCCcceEecc--------cC-----CCC-CCccCHHHHHHHHH
Confidence            6899999999998853    68999999999983 3321 1111000        00     010 48999999999999


Q ss_pred             HhhcCCCC-CceEEEecc
Q 020104          245 FLLEYPDA-KGRYICSSH  261 (331)
Q Consensus       245 ~~~~~~~~-~~~~~~~~~  261 (331)
                      .+++++.. ++.|+++++
T Consensus       187 ~~~~~~~~~g~~~~i~~g  204 (206)
T 1hdo_A          187 RCLTTDEYDGHSTYPSHQ  204 (206)
T ss_dssp             HTTSCSTTTTCEEEEECC
T ss_pred             HHhcCccccccceeeecc
Confidence            99998754 557887653

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=99.96  E-value=1.3e-29  Score=223.59  Aligned_cols=229  Identities=16%  Similarity=0.100  Sum_probs=165.5

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCC-CCCCccHHHH
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHAD-LSHPDGFDAA   79 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~   79 (331)
                      |+..+|+|||||||||||++++++|+++|++|++++|+.     +... ...+..    ..+++++.+| +.|++++.++
T Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~-----~~~~-~~~l~~----~~~v~~v~~D~l~d~~~l~~~   70 (352)
T 1xgk_A            1 MAQQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL-----KGLI-AEELQA----IPNVTLFQGPLLNNVPLMDTL   70 (352)
T ss_dssp             --CCCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCS-----CSHH-HHHHHT----STTEEEEESCCTTCHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCC-----Chhh-HHHHhh----cCCcEEEECCccCCHHHHHHH
Confidence            654467899999999999999999999999999999987     2221 111111    1468999999 9999999999


Q ss_pred             hcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhh
Q 020104           80 IAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIR  159 (331)
Q Consensus        80 ~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~  159 (331)
                      ++++|+|||+++...          ...|..+ ++++++|++.+.+++|||+||..+..++                   
T Consensus        71 ~~~~d~Vi~~a~~~~----------~~~~~~~-~~l~~aa~~~g~v~~~V~~SS~~~~~~~-------------------  120 (352)
T 1xgk_A           71 FEGAHLAFINTTSQA----------GDEIAIG-KDLADAAKRAGTIQHYIYSSMPDHSLYG-------------------  120 (352)
T ss_dssp             HTTCSEEEECCCSTT----------SCHHHHH-HHHHHHHHHHSCCSEEEEEECCCGGGTS-------------------
T ss_pred             HhcCCEEEEcCCCCC----------cHHHHHH-HHHHHHHHHcCCccEEEEeCCccccccC-------------------
Confidence            999999999987532          1235666 9999999987546899999997521001                   


Q ss_pred             hcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc-c-cccCC-CccceeH
Q 020104          160 KLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE-E-YGFLL-NTSMVHV  236 (331)
Q Consensus       160 ~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~-~~~~i~v  236 (331)
                        ..+.++|+.+|..+|++++.    .+++++++||+ +||++........+.. .....+... . ...+. .++++|+
T Consensus       121 --~~~~~~y~~sK~~~E~~~~~----~gi~~~ivrpg-~~g~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~i~v  192 (352)
T 1xgk_A          121 --PWPAVPMWAPKFTVENYVRQ----LGLPSTFVYAG-IYNNNFTSLPYPLFQM-ELMPDGTFEWHAPFDPDIPLPWLDA  192 (352)
T ss_dssp             --SCCCCTTTHHHHHHHHHHHT----SSSCEEEEEEC-EEGGGCBSSSCSSCBE-EECTTSCEEEEESSCTTSCEEEECH
T ss_pred             --CCCCccHHHHHHHHHHHHHH----cCCCEEEEecc-eecCCchhcccccccc-cccCCCceEEeeccCCCCceeeEec
Confidence              01235799999999999876    48999999986 7888754321111100 000011111 1 22222 3799999


Q ss_pred             -HHHHHHHHHhhcCCC---CCceEEEeccccCHHHHHHHHHhhCC
Q 020104          237 -DDVARAHIFLLEYPD---AKGRYICSSHTLTIQEMAEFLSAKYP  277 (331)
Q Consensus       237 -~D~a~~~~~~~~~~~---~~~~~~~~~~~~s~~e~~~~i~~~~~  277 (331)
                       +|+|++++.++.++.   .+++||++++.+|+.|+++.+.+.+|
T Consensus       193 ~~Dva~ai~~~l~~~~~~~~g~~~~l~~~~~s~~e~~~~i~~~~G  237 (352)
T 1xgk_A          193 EHDVGPALLQIFKDGPQKWNGHRIALTFETLSPVQVCAAFSRALN  237 (352)
T ss_dssp             HHHHHHHHHHHHHHCHHHHTTCEEEECSEEECHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCchhhCCeEEEEecCCCCHHHHHHHHHHHHC
Confidence             899999999998752   46789988888999999999999776

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=99.96  E-value=5.1e-29  Score=213.43  Aligned_cols=237  Identities=16%  Similarity=0.101  Sum_probs=168.0

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |+.++|+||||||+|+||++++++|+++|++|++++|+.     .....+..  +.   ..++.++.+|+.|.+++.+++
T Consensus         1 M~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~-----~~~~~~~~--~~---~~~~~~~~~Dv~~~~~~~~~~   70 (281)
T 3m1a_A            1 MSESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRT-----EALDDLVA--AY---PDRAEAISLDVTDGERIDVVA   70 (281)
T ss_dssp             ---CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSG-----GGGHHHHH--HC---TTTEEEEECCTTCHHHHHHHH
T ss_pred             CCCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHH--hc---cCCceEEEeeCCCHHHHHHHH
Confidence            766778999999999999999999999999999999987     22222211  11   247899999999999888877


Q ss_pred             c-------CccEEEEecccCCC------CCCChhhHHHHHHHHH----HHHHHHHHHhcCCccEEEEecccceeecCCCC
Q 020104           81 A-------GCTGVLHVATPVDF------EDKEPEEVITQRAING----TLGILKSCLKSGTVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        81 ~-------~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~----~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~  143 (331)
                      +       ++|+|||+||....      ...++ +..+++|+.+    ++.+++.+++.+ .+++|++||...+..    
T Consensus        71 ~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~-~~~~~~N~~g~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~~~----  144 (281)
T 3m1a_A           71 ADVLARYGRVDVLVNNAGRTQVGAFEETTEREL-RDLFELHVFGPARLTRALLPQMRERG-SGSVVNISSFGGQLS----  144 (281)
T ss_dssp             HHHHHHHSCCSEEEECCCCEEECCTTTCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTCC----
T ss_pred             HHHHHhCCCCCEEEECCCcCCCCChhhCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEEcCccccCC----
Confidence            5       78999999986432      11123 3688999999    566666666766 689999999776531    


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCC-------CCccHHH
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPK-------FAGSVRS  213 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~-------~~~~~~~  213 (331)
                                        .++.++|+.+|.+.|.+++.++.+   +++++++++||.+.++.....       .......
T Consensus       145 ------------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~  206 (281)
T 3m1a_A          145 ------------------FAGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEENPAYAEK  206 (281)
T ss_dssp             ------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTCCCCEEECCBCTTTHHH
T ss_pred             ------------------CCCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCccccccccccccccCCcchhhHHH
Confidence                              133568999999999999999887   689999999999988753321       1111111


Q ss_pred             HHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCCCCceEEEec-cccCHHHHHHHHHhh
Q 020104          214 SLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDAKGRYICSS-HTLTIQEMAEFLSAK  275 (331)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~~-~~~s~~e~~~~i~~~  275 (331)
                      ....   .. ........++.+++|+|++++++++++..++.|++++ ....+.+.+..+.+.
T Consensus       207 ~~~~---~~-~~~~~~~~~~~~~~dva~a~~~~~~~~~~~~~~~l~s~~~~~i~g~~~~i~~~  265 (281)
T 3m1a_A          207 VGPT---RQ-LVQGSDGSQPGDPAKAAAAIRLALDTEKTPLRLALGGDAVDFLTGHLDSVRAE  265 (281)
T ss_dssp             HHHH---HH-HHHC-----CBCHHHHHHHHHHHHHSSSCCSEEEESHHHHHHHHHHHHHHHHH
T ss_pred             hHHH---HH-HHhhccCCCCCCHHHHHHHHHHHHhCCCCCeEEecCchHHHHHHHHHHHHHHH
Confidence            1100   00 0000111378899999999999999988888888765 445666666666553

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=99.96  E-value=1.6e-27  Score=203.82  Aligned_cols=237  Identities=14%  Similarity=0.163  Sum_probs=170.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|+||||||+|+||++++++|+++|++|++++|+.     .....+..  ++.. ..++.++.+|+.|.+++.++++  
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~-----~~~~~~~~--~~~~-~~~~~~~~~D~~~~~~~~~~~~~~   86 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIAD-----DHGQKVCN--NIGS-PDVISFVHCDVTKDEDVRNLVDTT   86 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHH--HHCC-TTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCh-----hHHHHHHH--HhCC-CCceEEEECCCCCHHHHHHHHHHH
Confidence            457899999999999999999999999999999876     22211111  1111 1368999999999998888875  


Q ss_pred             -----CccEEEEecccCCC-----CCC--ChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCCCCCC
Q 020104           82 -----GCTGVLHVATPVDF-----EDK--EPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~-----~~~--~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                           ++|+|||+|+....     ...  +..+..+++|+.++.++++++...    + .+++|++||...+...     
T Consensus        87 ~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~~~-----  160 (278)
T 2bgk_A           87 IAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAK-KGSIVFTASISSFTAG-----  160 (278)
T ss_dssp             HHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGT-CEEEEEECCGGGTCCC-----
T ss_pred             HHHcCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC-CCeEEEEeeccccCCC-----
Confidence                 79999999986531     111  112378899999999999988763    4 5799999998876411     


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                      +.+...|+.+|.+.+.+++.++.+   ++++++++|||.++|+....................+
T Consensus       161 ----------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~  224 (278)
T 2bgk_A          161 ----------------EGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAA  224 (278)
T ss_dssp             ----------------TTSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTC
T ss_pred             ----------------CCCCcchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeceecchhhhhhcccchhHHHHhhhccc
Confidence                            012457999999999999998876   4899999999999998654322111111111111111


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEec-cccCHHHHHHHHHhh
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSS-HTLTIQEMAEFLSAK  275 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~-~~~s~~e~~~~i~~~  275 (331)
                      ...     ..+++++|+|+++++++..+.   .+..|++++ ..+++.|+++.+.+.
T Consensus       225 ~~~-----~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~e~~~~i~~~  276 (278)
T 2bgk_A          225 NLK-----GTLLRAEDVADAVAYLAGDESKYVSGLNLVIDGGYTRTNPAFPTALKHG  276 (278)
T ss_dssp             SSC-----SCCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGCCTHHHHHSCSC
T ss_pred             ccc-----cccCCHHHHHHHHHHHcCcccccCCCCEEEECCcccccCCccchhhhhh
Confidence            111     368999999999999997542   245778754 679999999987654

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=99.95  E-value=1.8e-26  Score=192.45  Aligned_cols=201  Identities=16%  Similarity=0.105  Sum_probs=137.7

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      ++||+||||||||+||++++++|++.| ++|++++|++     +....   +     ...+++++.+|+.|++++.++++
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~-----~~~~~---~-----~~~~~~~~~~Dl~d~~~~~~~~~   87 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQP-----AKIHK---P-----YPTNSQIIMGDVLNHAALKQAMQ   87 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSG-----GGSCS---S-----CCTTEEEEECCTTCHHHHHHHHT
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcCh-----hhhcc---c-----ccCCcEEEEecCCCHHHHHHHhc
Confidence            357789999999999999999999999 8999999987     22111   1     11478999999999999999999


Q ss_pred             CccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhc
Q 020104           82 GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKL  161 (331)
Q Consensus        82 ~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~  161 (331)
                      ++|+|||+|+...        ..     ..++++++++++.+ +++||++||..+|+..+....+..+..+         
T Consensus        88 ~~D~vv~~a~~~~--------~~-----~~~~~~~~~~~~~~-~~~iV~iSS~~~~~~~~~~~~~~~~~~~---------  144 (236)
T 3qvo_A           88 GQDIVYANLTGED--------LD-----IQANSVIAAMKACD-VKRLIFVLSLGIYDEVPGKFVEWNNAVI---------  144 (236)
T ss_dssp             TCSEEEEECCSTT--------HH-----HHHHHHHHHHHHTT-CCEEEEECCCCC-------------------------
T ss_pred             CCCEEEEcCCCCc--------hh-----HHHHHHHHHHHHcC-CCEEEEEecceecCCCCcccccchhhcc---------
Confidence            9999999998521        11     24678999999998 8999999999988532222222233221         


Q ss_pred             CCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHHHHHH
Q 020104          162 DSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVAR  241 (331)
Q Consensus       162 ~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~  241 (331)
                      ..    +...+..+|..++    ..++++++|||+.++++.....  ..        .......    ...+++.+|+|+
T Consensus       145 ~~----~~~~~~~~~~~l~----~~gi~~~~vrPg~i~~~~~~~~--~~--------~~~~~~~----~~~~i~~~DvA~  202 (236)
T 3qvo_A          145 GE----PLKPFRRAADAIE----ASGLEYTILRPAWLTDEDIIDY--EL--------TSRNEPF----KGTIVSRKSVAA  202 (236)
T ss_dssp             CG----GGHHHHHHHHHHH----TSCSEEEEEEECEEECCSCCCC--EE--------ECTTSCC----SCSEEEHHHHHH
T ss_pred             cc----hHHHHHHHHHHHH----HCCCCEEEEeCCcccCCCCcce--EE--------eccCCCC----CCcEECHHHHHH
Confidence            11    2223344454443    4799999999999998753210  00        0001111    136899999999


Q ss_pred             HHHHhhcCCC--CCceEEEecc
Q 020104          242 AHIFLLEYPD--AKGRYICSSH  261 (331)
Q Consensus       242 ~~~~~~~~~~--~~~~~~~~~~  261 (331)
                      ++++++.++.  .++.|++++.
T Consensus       203 ~i~~ll~~~~~~~g~~~~i~~~  224 (236)
T 3qvo_A          203 LITDIIDKPEKHIGENIGINQP  224 (236)
T ss_dssp             HHHHHHHSTTTTTTEEEEEECS
T ss_pred             HHHHHHcCcccccCeeEEecCC
Confidence            9999999876  4667887653

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=99.95  E-value=1.2e-27  Score=208.21  Aligned_cols=236  Identities=19%  Similarity=0.213  Sum_probs=161.9

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |+. +|+|+||||||+||++++++|++.|++|++++|+....   ..++...+..+.  ..+++++.+|+.|++++.+++
T Consensus         1 M~~-~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~---~~~~~~~~~~~~--~~~~~~~~~D~~d~~~l~~~~   74 (313)
T 1qyd_A            1 MDK-KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVS---NIDKVQMLLYFK--QLGAKLIEASLDDHQRLVDAL   74 (313)
T ss_dssp             -CC-CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSS---CHHHHHHHHHHH--TTTCEEECCCSSCHHHHHHHH
T ss_pred             CCC-CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCccc---chhHHHHHHHHH--hCCeEEEeCCCCCHHHHHHHH
Confidence            643 56899999999999999999999999999999986210   011211111110  147899999999999999999


Q ss_pred             cCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhh
Q 020104           81 AGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRK  160 (331)
Q Consensus        81 ~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~  160 (331)
                      +++|+|||+++.....          .|+.++.+++++|++.+.++|||+ |+   |+.. .. .+   +++        
T Consensus        75 ~~~d~vi~~a~~~~~~----------~~~~~~~~l~~aa~~~g~v~~~v~-S~---~g~~-~~-~~---~~~--------  127 (313)
T 1qyd_A           75 KQVDVVISALAGGVLS----------HHILEQLKLVEAIKEAGNIKRFLP-SE---FGMD-PD-IM---EHA--------  127 (313)
T ss_dssp             TTCSEEEECCCCSSSS----------TTTTTHHHHHHHHHHSCCCSEEEC-SC---CSSC-TT-SC---CCC--------
T ss_pred             hCCCEEEECCccccch----------hhHHHHHHHHHHHHhcCCCceEEe-cC---CcCC-cc-cc---ccC--------
Confidence            9999999999865321          256678999999999865789985 43   4311 11 11   111        


Q ss_pred             cCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC-cccccCCC-ccceeHHH
Q 020104          161 LDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR-EEYGFLLN-TSMVHVDD  238 (331)
Q Consensus       161 ~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~i~v~D  238 (331)
                      ..+..+.| .+|..+|+.++.    .+++++++||+.++|+.... ......  .....+.. ..++.+.. ++++|++|
T Consensus       128 ~~p~~~~y-~sK~~~e~~~~~----~g~~~~ilrp~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~g~~~~~~i~~~D  199 (313)
T 1qyd_A          128 LQPGSITF-IDKRKVRRAIEA----ASIPYTYVSSNMFAGYFAGS-LAQLDG--HMMPPRDKVLIYGDGNVKGIWVDEDD  199 (313)
T ss_dssp             CSSTTHHH-HHHHHHHHHHHH----TTCCBCEEECCEEHHHHTTT-SSCTTC--CSSCCSSEECCBTTSCSEEEEECHHH
T ss_pred             CCCCcchH-HHHHHHHHHHHh----cCCCeEEEEeceeccccccc-cccccc--cccCCCCeEEEeCCCCceEEEEEHHH
Confidence            01114568 999999998864    68999999999998753221 100000  00001111 22333333 79999999


Q ss_pred             HHHHHHHhhcCCCC-CceEEE-e-ccccCHHHHHHHHHhhCC
Q 020104          239 VARAHIFLLEYPDA-KGRYIC-S-SHTLTIQEMAEFLSAKYP  277 (331)
Q Consensus       239 ~a~~~~~~~~~~~~-~~~~~~-~-~~~~s~~e~~~~i~~~~~  277 (331)
                      +|++++.++.++.. ++.|++ + ++.+|+.|+++.+.+.+|
T Consensus       200 va~~~~~~l~~~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g  241 (313)
T 1qyd_A          200 VGTYTIKSIDDPQTLNKTMYIRPPMNILSQKEVIQIWERLSE  241 (313)
T ss_dssp             HHHHHHHHTTCGGGSSSEEECCCGGGEEEHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCcccCCceEEEeCCCCccCHHHHHHHHHHhcC
Confidence            99999999987653 555654 4 468999999999999877

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=99.95  E-value=9.3e-28  Score=202.60  Aligned_cols=232  Identities=16%  Similarity=0.060  Sum_probs=158.8

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      ||+||||||+|+||++++++|+++|++|++++|+..     ...            .   .+.+|+.|.+++.++++   
T Consensus         1 Mk~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~-----~~~------------~---~~~~D~~~~~~~~~~~~~~~   60 (255)
T 2dkn_A            1 MSVIAITGSASGIGAALKELLARAGHTVIGIDRGQA-----DIE------------A---DLSTPGGRETAVAAVLDRCG   60 (255)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS-----SEE------------C---CTTSHHHHHHHHHHHHHHHT
T ss_pred             CcEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChh-----Hcc------------c---cccCCcccHHHHHHHHHHcC
Confidence            368999999999999999999999999999999872     111            0   16689999888888876   


Q ss_pred             -CccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCCCCCCcccCCCC-CCh
Q 020104           82 -GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYNDKDVDMMDETFW-SDV  155 (331)
Q Consensus        82 -~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~-~~~  155 (331)
                       ++|+|||+|+.... ..++. ..+++|+.++.++++++.+.    + .+++|++||..+++.. ....+..|... ...
T Consensus        61 ~~~d~vi~~Ag~~~~-~~~~~-~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~~~-~~~~~~~~~~~~~~~  136 (255)
T 2dkn_A           61 GVLDGLVCCAGVGVT-AANSG-LVVAVNYFGVSALLDGLAEALSRGQ-QPAAVIVGSIAATQPG-AAELPMVEAMLAGDE  136 (255)
T ss_dssp             TCCSEEEECCCCCTT-SSCHH-HHHHHHTHHHHHHHHHHHHHHHTSS-SCEEEEECCGGGGSTT-GGGCHHHHHHHHTCH
T ss_pred             CCccEEEECCCCCCc-chhHH-HHHHHHhHHHHHHHHHHHHHhhhcC-CceEEEEecccccccc-ccccchhhhhcccch
Confidence             79999999997542 23444 89999999999999987764    4 5899999999888522 11111111100 000


Q ss_pred             h----hhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccC
Q 020104          156 D----YIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFL  228 (331)
Q Consensus       156 ~----~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (331)
                      +    ......++.+.|+.+|.+.|.+++.++.+   ++++++++||+.++|+...........  .....    .+. +
T Consensus       137 ~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~~~~~~~~~~~--~~~~~----~~~-~  209 (255)
T 2dkn_A          137 ARAIELAEQQGQTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLLQASKADPRY--GESTR----RFV-A  209 (255)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHHHHHHHHCTTT--HHHHH----SCC-C
T ss_pred             hhhhhhccccCCcchhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchhhhhcccchhh--HHHHH----HHH-H
Confidence            0    00011234668999999999999988876   589999999999998742110000000  00000    010 0


Q ss_pred             CCccceeHHHHHHHHHHhhcCC--C-CCceEEEec-cccCHHH
Q 020104          229 LNTSMVHVDDVARAHIFLLEYP--D-AKGRYICSS-HTLTIQE  267 (331)
Q Consensus       229 ~~~~~i~v~D~a~~~~~~~~~~--~-~~~~~~~~~-~~~s~~e  267 (331)
                      ...++++++|+|+++++++..+  . .+..|++++ ..++++|
T Consensus       210 ~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~e  252 (255)
T 2dkn_A          210 PLGRGSEPREVAEAIAFLLGPQASFIHGSVLFVDGGMDALMRA  252 (255)
T ss_dssp             TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTHHHHHCT
T ss_pred             HhcCCCCHHHHHHHHHHHhCCCcccceeeEEEecCCeEeeeec
Confidence            2247999999999999999875  2 355788765 4555543

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=99.94  E-value=3.9e-27  Score=204.43  Aligned_cols=230  Identities=20%  Similarity=0.243  Sum_probs=158.9

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |+. ||+|+||||||+||++++++|++.|++|++++|+.....  ..++...+..+.  ..+++++.+|+.|++++.+++
T Consensus         1 M~~-~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~--~~~~~~~~~~l~--~~~v~~v~~D~~d~~~l~~~~   75 (308)
T 1qyc_A            1 MGS-RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASS--NSEKAQLLESFK--ASGANIVHGSIDDHASLVEAV   75 (308)
T ss_dssp             -CC-CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTT--THHHHHHHHHHH--TTTCEEECCCTTCHHHHHHHH
T ss_pred             CCC-CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCccccc--CHHHHHHHHHHH--hCCCEEEEeccCCHHHHHHHH
Confidence            543 568999999999999999999999999999999862110  011111111110  157899999999999999999


Q ss_pred             cCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhh
Q 020104           81 AGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRK  160 (331)
Q Consensus        81 ~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~  160 (331)
                      +++|+|||+++...              +.++.+++++|++.+.+++||+ |+   |+. ..     +|.++        
T Consensus        76 ~~~d~vi~~a~~~~--------------~~~~~~l~~aa~~~g~v~~~v~-S~---~g~-~~-----~~~~~--------  123 (308)
T 1qyc_A           76 KNVDVVISTVGSLQ--------------IESQVNIIKAIKEVGTVKRFFP-SE---FGN-DV-----DNVHA--------  123 (308)
T ss_dssp             HTCSEEEECCCGGG--------------SGGGHHHHHHHHHHCCCSEEEC-SC---CSS-CT-----TSCCC--------
T ss_pred             cCCCEEEECCcchh--------------hhhHHHHHHHHHhcCCCceEee-cc---ccc-Cc-----ccccc--------
Confidence            99999999998532              2346789999998865789984 43   431 11     12221        


Q ss_pred             cCCC-CchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC-cccccCCC-ccceeHH
Q 020104          161 LDSW-GKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR-EEYGFLLN-TSMVHVD  237 (331)
Q Consensus       161 ~~~~-~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~i~v~  237 (331)
                       ..| .+.| .+|..+|+.++.    .+++++++||+.++|+.........    .....+.. ..++.+.. ++|+|++
T Consensus       124 -~~p~~~~y-~sK~~~e~~~~~----~~~~~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~  193 (308)
T 1qyc_A          124 -VEPAKSVF-EVKAKVRRAIEA----EGIPYTYVSSNCFAGYFLRSLAQAG----LTAPPRDKVVILGDGNARVVFVKEE  193 (308)
T ss_dssp             -CTTHHHHH-HHHHHHHHHHHH----HTCCBEEEECCEEHHHHTTTTTCTT----CSSCCSSEEEEETTSCCEEEEECHH
T ss_pred             -CCcchhHH-HHHHHHHHHHHh----cCCCeEEEEeceecccccccccccc----ccCCCCCceEEecCCCceEEEecHH
Confidence             122 3468 999999988865    5799999999999885322111000    00001111 22333333 7999999


Q ss_pred             HHHHHHHHhhcCCCC-CceEEE-e-ccccCHHHHHHHHHhhCC
Q 020104          238 DVARAHIFLLEYPDA-KGRYIC-S-SHTLTIQEMAEFLSAKYP  277 (331)
Q Consensus       238 D~a~~~~~~~~~~~~-~~~~~~-~-~~~~s~~e~~~~i~~~~~  277 (331)
                      |++++++.++.++.. ++.|++ + ++.+|+.|+++.+.+.+|
T Consensus       194 Dva~~~~~~l~~~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g  236 (308)
T 1qyc_A          194 DIGTFTIKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKID  236 (308)
T ss_dssp             HHHHHHHTTSSCGGGTTEEEECCCGGGEEEHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCccccCeEEEEeCCCCccCHHHHHHHHHHHhC
Confidence            999999999987653 456664 3 468999999999999887

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=99.94  E-value=1.2e-26  Score=195.82  Aligned_cols=220  Identities=12%  Similarity=0.071  Sum_probs=159.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|+||||||+|+||++++++|+++|++|++++|+.     ...+.+ ..+..   ...++.++.+|+.|++++.++++ 
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~   81 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINA-----DAANHVVDEIQQ---LGGQAFACRCDITSEQELSALADF   81 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCH-----HHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCH-----HHHHHHHHHHHH---hCCceEEEEcCCCCHHHHHHHHHH
Confidence            457899999999999999999999999999999986     222111 11111   12468899999999998888875 


Q ss_pred             ------CccEEEEecccCCCC-----CCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCc
Q 020104           82 ------GCTGVLHVATPVDFE-----DKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                            ++|+|||+|+.....     ..++ +..+++|+.++.++++++.    +.+ .+++|++||...+..       
T Consensus        82 ~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~-~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~~-------  152 (255)
T 1fmc_A           82 AISKLGKVDILVNNAGGGGPKPFDMPMADF-RRAYELNVFSFFHLSQLVAPEMEKNG-GGVILTITSMAAENK-------  152 (255)
T ss_dssp             HHHHHSSCCEEEECCCCCCCCCTTCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTCC-------
T ss_pred             HHHhcCCCCEEEECCCCCCCCCCCCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcchhhcCC-------
Confidence                  799999999865421     1122 3788999999999988875    445 689999999876531       


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHH-HHhCCC
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLA-LILGNR  222 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~-~~~~~~  222 (331)
                                     .++.+.|+.+|.+.|.+++.++.+.   +++++++||+.++++.......   ..... ...+. 
T Consensus       153 ---------------~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~Pg~v~t~~~~~~~~---~~~~~~~~~~~-  213 (255)
T 1fmc_A          153 ---------------NINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVIT---PEIEQKMLQHT-  213 (255)
T ss_dssp             ---------------CTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCC---HHHHHHHHHTC-
T ss_pred             ---------------CCCCcccHHHHHHHHHHHHHHHHHhhhcCcEEEEEecccCcchhhhhccC---hHHHHHHHhcC-
Confidence                           1235689999999999999988765   8999999999999874322111   11111 11221 


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEec-cccCH
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSS-HTLTI  265 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~-~~~s~  265 (331)
                       .+     ..+++++|+|+++++++..+.   .+..|++++ ..+|+
T Consensus       214 -~~-----~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~s~  254 (255)
T 1fmc_A          214 -PI-----RRLGQPQDIANAALFLCSPAASWVSGQILTVSGGGVQEL  254 (255)
T ss_dssp             -SS-----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSCCCC
T ss_pred             -Cc-----ccCCCHHHHHHHHHHHhCCccccCCCcEEEECCceeccC
Confidence             11     268899999999999997643   355788864 44553

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=99.94  E-value=2.8e-25  Score=183.40  Aligned_cols=201  Identities=15%  Similarity=0.141  Sum_probs=144.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHH-HCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLL-DHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      ||++||||||||+||++++++|+ +.|++|++++|++     +.  .+..+..   ...+++++.+|+.|.+++.+++++
T Consensus         4 mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~-----~~--~~~~~~~---~~~~~~~~~~D~~d~~~~~~~~~~   73 (221)
T 3r6d_A            4 MYXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQL-----KT--RIPPEII---DHERVTVIEGSFQNPGXLEQAVTN   73 (221)
T ss_dssp             SCSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSH-----HH--HSCHHHH---TSTTEEEEECCTTCHHHHHHHHTT
T ss_pred             eEEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCc-----cc--cchhhcc---CCCceEEEECCCCCHHHHHHHHcC
Confidence            45569999999999999999999 8999999999987     20  2221110   125789999999999999999999


Q ss_pred             ccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcC
Q 020104           83 CTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLD  162 (331)
Q Consensus        83 ~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~  162 (331)
                      +|+|||+|+..              |+. ++++++++++.+ +++||++||..++...+   ....+..         ..
T Consensus        74 ~d~vv~~ag~~--------------n~~-~~~~~~~~~~~~-~~~iv~iSs~~~~~~~~---~~~~~~~---------~~  125 (221)
T 3r6d_A           74 AEVVFVGAMES--------------GSD-MASIVKALSRXN-IRRVIGVSMAGLSGEFP---VALEKWT---------FD  125 (221)
T ss_dssp             CSEEEESCCCC--------------HHH-HHHHHHHHHHTT-CCEEEEEEETTTTSCSC---HHHHHHH---------HH
T ss_pred             CCEEEEcCCCC--------------Chh-HHHHHHHHHhcC-CCeEEEEeeceecCCCC---ccccccc---------cc
Confidence            99999999852              333 899999999988 89999999988774111   1110000         01


Q ss_pred             CCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHHHHHHH
Q 020104          163 SWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARA  242 (331)
Q Consensus       163 ~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~  242 (331)
                      ...+.|+.+|..+|.+++.    .+++++++||+.++++.........         ......    ...+++.+|+|++
T Consensus       126 ~~~~~y~~~K~~~e~~~~~----~~i~~~~vrpg~v~~~~~~~~~~~~---------~~~~~~----~~~~~~~~dvA~~  188 (221)
T 3r6d_A          126 NLPISYVQGERQARNVLRE----SNLNYTILRLTWLYNDPEXTDYELI---------PEGAQF----NDAQVSREAVVKA  188 (221)
T ss_dssp             TSCHHHHHHHHHHHHHHHH----SCSEEEEEEECEEECCTTCCCCEEE---------CTTSCC----CCCEEEHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHh----CCCCEEEEechhhcCCCCCcceeec---------cCCccC----CCceeeHHHHHHH
Confidence            1122799999999998864    7899999999999987322111000         000011    1258999999999


Q ss_pred             HHHhh--cCCCC--CceEEEe
Q 020104          243 HIFLL--EYPDA--KGRYICS  259 (331)
Q Consensus       243 ~~~~~--~~~~~--~~~~~~~  259 (331)
                      +++++  .++..  ++.+.+.
T Consensus       189 ~~~l~~~~~~~~~~~~~~~i~  209 (221)
T 3r6d_A          189 IFDILHAADETPFHRTSIGVG  209 (221)
T ss_dssp             HHHHHTCSCCGGGTTEEEEEE
T ss_pred             HHHHHHhcChhhhhcceeeec
Confidence            99999  76642  3445444

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=99.94  E-value=1.4e-26  Score=201.91  Aligned_cols=219  Identities=17%  Similarity=0.145  Sum_probs=156.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      |+++||||||||+||++++++|++.|++|++++|++.    .....+..+..     .+++++.+|+.|++++.++++++
T Consensus        10 m~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~----~~~~~~~~l~~-----~~v~~v~~Dl~d~~~l~~a~~~~   80 (318)
T 2r6j_A           10 MKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS----SKTTLLDEFQS-----LGAIIVKGELDEHEKLVELMKKV   80 (318)
T ss_dssp             CCCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTC----SCHHHHHHHHH-----TTCEEEECCTTCHHHHHHHHTTC
T ss_pred             CCCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCC----chhhHHHHhhc-----CCCEEEEecCCCHHHHHHHHcCC
Confidence            3458999999999999999999999999999999872    12111211111     46899999999999999999999


Q ss_pred             cEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCC
Q 020104           84 TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDS  163 (331)
Q Consensus        84 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~  163 (331)
                      |+|||+++...              +.++.+++++|++.+.+++||+ |+   |+. ..     +|.++.         .
T Consensus        81 d~vi~~a~~~~--------------~~~~~~l~~aa~~~g~v~~~v~-S~---~g~-~~-----~~~~~~---------~  127 (318)
T 2r6j_A           81 DVVISALAFPQ--------------ILDQFKILEAIKVAGNIKRFLP-SD---FGV-EE-----DRINAL---------P  127 (318)
T ss_dssp             SEEEECCCGGG--------------STTHHHHHHHHHHHCCCCEEEC-SC---CSS-CT-----TTCCCC---------H
T ss_pred             CEEEECCchhh--------------hHHHHHHHHHHHhcCCCCEEEe-ec---ccc-Cc-----ccccCC---------C
Confidence            99999998532              3346889999998864789884 43   431 11     222211         1


Q ss_pred             C-CchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHH-HhCCC-cccccCCC-ccceeHHHH
Q 020104          164 W-GKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLAL-ILGNR-EEYGFLLN-TSMVHVDDV  239 (331)
Q Consensus       164 ~-~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~-~~~i~v~D~  239 (331)
                      | .+.| .+|..+|++++.    .+++++++||+.+++..        +..+... ..+.. ..++.+.. ++++|++|+
T Consensus       128 p~~~~y-~sK~~~e~~~~~----~~~~~~~lr~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dv  194 (318)
T 2r6j_A          128 PFEALI-ERKRMIRRAIEE----ANIPYTYVSANCFASYF--------INYLLRPYDPKDEITVYGTGEAKFAMNYEQDI  194 (318)
T ss_dssp             HHHHHH-HHHHHHHHHHHH----TTCCBEEEECCEEHHHH--------HHHHHCTTCCCSEEEEETTSCCEEEEECHHHH
T ss_pred             CcchhH-HHHHHHHHHHHh----cCCCeEEEEcceehhhh--------hhhhccccCCCCceEEecCCCceeeEeeHHHH
Confidence            1 2468 999999988864    68999999999877641        1111111 11111 22333333 799999999


Q ss_pred             HHHHHHhhcCCCC-CceEEE-e-ccccCHHHHHHHHHhhCC
Q 020104          240 ARAHIFLLEYPDA-KGRYIC-S-SHTLTIQEMAEFLSAKYP  277 (331)
Q Consensus       240 a~~~~~~~~~~~~-~~~~~~-~-~~~~s~~e~~~~i~~~~~  277 (331)
                      +++++.++.++.. ++.|++ + ++.+|+.|+++.+.+.+|
T Consensus       195 a~~~~~~l~~~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g  235 (318)
T 2r6j_A          195 GLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIG  235 (318)
T ss_dssp             HHHHHHHTTCGGGTTEEEECCCGGGEEEHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCccccCeEEEecCCCCccCHHHHHHHHHHHhC
Confidence            9999999987653 455654 3 478999999999999877

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=99.94  E-value=8.9e-27  Score=203.35  Aligned_cols=223  Identities=15%  Similarity=0.151  Sum_probs=156.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC-CCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE-LDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      +||+|+||||||+||++++++|++.|++|++++|++ ...   ...+...+..+.  ..+++++.+|+.|++++.+++++
T Consensus         3 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~---~~~~~~~l~~~~--~~~v~~v~~D~~d~~~l~~a~~~   77 (321)
T 3c1o_A            3 HMEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDS---TPSSVQLREEFR--SMGVTIIEGEMEEHEKMVSVLKQ   77 (321)
T ss_dssp             -CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTC---CHHHHHHHHHHH--HTTCEEEECCTTCHHHHHHHHTT
T ss_pred             cccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCccccc---ChHHHHHHHHhh--cCCcEEEEecCCCHHHHHHHHcC
Confidence            467899999999999999999999999999999985 100   011111111110  14689999999999999999999


Q ss_pred             ccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcC
Q 020104           83 CTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLD  162 (331)
Q Consensus        83 ~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~  162 (331)
                      +|+|||+|+...              +.++.+++++|++.+.+++||+ |   +|+..      .+|.++.         
T Consensus        78 ~d~vi~~a~~~~--------------~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~------~~~~~~~---------  124 (321)
T 3c1o_A           78 VDIVISALPFPM--------------ISSQIHIINAIKAAGNIKRFLP-S---DFGCE------EDRIKPL---------  124 (321)
T ss_dssp             CSEEEECCCGGG--------------SGGGHHHHHHHHHHCCCCEEEC-S---CCSSC------GGGCCCC---------
T ss_pred             CCEEEECCCccc--------------hhhHHHHHHHHHHhCCccEEec-c---ccccC------ccccccC---------
Confidence            999999998532              3456889999998864789983 3   34311      1222211         


Q ss_pred             CC-CchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHH----HhCCC-cccccCCC-cccee
Q 020104          163 SW-GKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLAL----ILGNR-EEYGFLLN-TSMVH  235 (331)
Q Consensus       163 ~~-~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~-~~~i~  235 (331)
                      .| .+.| .+|..+|.+++.    .+++++++||+.++++..        ..+...    ..+.. ..++.+.. ++++|
T Consensus       125 ~p~~~~y-~sK~~~e~~~~~----~~~~~~~lrp~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  191 (321)
T 3c1o_A          125 PPFESVL-EKKRIIRRAIEA----AALPYTYVSANCFGAYFV--------NYLLHPSPHPNRNDDIVIYGTGETKFVLNY  191 (321)
T ss_dssp             HHHHHHH-HHHHHHHHHHHH----HTCCBEEEECCEEHHHHH--------HHHHCCCSSCCTTSCEEEETTSCCEEEEEC
T ss_pred             CCcchHH-HHHHHHHHHHHH----cCCCeEEEEeceeccccc--------cccccccccccccCceEEecCCCcceeEee
Confidence            11 3469 999999998864    579999999998887521        111110    01111 22333333 79999


Q ss_pred             HHHHHHHHHHhhcCCCC-CceEEE-e-ccccCHHHHHHHHHhhCC
Q 020104          236 VDDVARAHIFLLEYPDA-KGRYIC-S-SHTLTIQEMAEFLSAKYP  277 (331)
Q Consensus       236 v~D~a~~~~~~~~~~~~-~~~~~~-~-~~~~s~~e~~~~i~~~~~  277 (331)
                      ++|+|++++.++.++.. ++.|++ + ++.+|+.|+++.+.+.+|
T Consensus       192 ~~Dva~~~~~~l~~~~~~g~~~~~~g~~~~~t~~e~~~~~~~~~g  236 (321)
T 3c1o_A          192 EEDIAKYTIKVACDPRCCNRIVIYRPPKNIISQNELISLWEAKSG  236 (321)
T ss_dssp             HHHHHHHHHHHHHCGGGTTEEEECCCGGGEEEHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCccccCeEEEEeCCCCcccHHHHHHHHHHHcC
Confidence            99999999999987654 455665 4 478999999999999877

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=99.94  E-value=2.6e-26  Score=199.10  Aligned_cols=227  Identities=18%  Similarity=0.155  Sum_probs=156.8

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCc-cccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNS-KDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      ||+|+||||||+||++++++|++.|++|++++|++...  ... ++...+..+.  ..+++++.+|+.|++++.++++++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~--~~~~~~~~~~~~l~--~~~v~~v~~D~~d~~~l~~~~~~~   77 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITA--ANPETKEELIDNYQ--SLGVILLEGDINDHETLVKAIKQV   77 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCS--SCHHHHHHHHHHHH--HTTCEEEECCTTCHHHHHHHHTTC
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCccc--CChHHHHHHHHHHH--hCCCEEEEeCCCCHHHHHHHHhCC
Confidence            57899999999999999999999999999999986100  001 1111111110  146899999999999999999999


Q ss_pred             cEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCC
Q 020104           84 TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDS  163 (331)
Q Consensus        84 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~  163 (331)
                      |+|||+|+...              +.++.+++++|++.+.+++||+ |+   |+. ..     +|.++         ..
T Consensus        78 d~vi~~a~~~~--------------~~~~~~l~~aa~~~g~v~~~v~-S~---~g~-~~-----~~~~~---------~~  124 (307)
T 2gas_A           78 DIVICAAGRLL--------------IEDQVKIIKAIKEAGNVKKFFP-SE---FGL-DV-----DRHDA---------VE  124 (307)
T ss_dssp             SEEEECSSSSC--------------GGGHHHHHHHHHHHCCCSEEEC-SC---CSS-CT-----TSCCC---------CT
T ss_pred             CEEEECCcccc--------------cccHHHHHHHHHhcCCceEEee-cc---ccc-Cc-----ccccC---------CC
Confidence            99999998632              2346789999998864789983 33   431 11     12221         12


Q ss_pred             C-CchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC-cccccCCC-ccceeHHHHH
Q 020104          164 W-GKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR-EEYGFLLN-TSMVHVDDVA  240 (331)
Q Consensus       164 ~-~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~i~v~D~a  240 (331)
                      | .+.| .+|..+|+.++.    .+++++++||+.++++.... .....   ........ ..++.+.. ++++|++|+|
T Consensus       125 p~~~~y-~sK~~~e~~~~~----~~i~~~~lrp~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~Dva  195 (307)
T 2gas_A          125 PVRQVF-EEKASIRRVIEA----EGVPYTYLCCHAFTGYFLRN-LAQLD---ATDPPRDKVVILGDGNVKGAYVTEADVG  195 (307)
T ss_dssp             THHHHH-HHHHHHHHHHHH----HTCCBEEEECCEETTTTGGG-TTCTT---CSSCCSSEEEEETTSCSEEEEECHHHHH
T ss_pred             cchhHH-HHHHHHHHHHHH----cCCCeEEEEcceeecccccc-ccccc---cccCCCCeEEEecCCCcceEEeeHHHHH
Confidence            2 3578 999999988864    58999999999988764221 10000   00001111 12333333 7999999999


Q ss_pred             HHHHHhhcCCCC-CceEEE-e-ccccCHHHHHHHHHhhCC
Q 020104          241 RAHIFLLEYPDA-KGRYIC-S-SHTLTIQEMAEFLSAKYP  277 (331)
Q Consensus       241 ~~~~~~~~~~~~-~~~~~~-~-~~~~s~~e~~~~i~~~~~  277 (331)
                      ++++.++.++.. ++.|++ + ++.+|+.|+++.+.+.+|
T Consensus       196 ~~~~~~l~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g  235 (307)
T 2gas_A          196 TFTIRAANDPNTLNKAVHIRLPKNYLTQNEVIALWEKKIG  235 (307)
T ss_dssp             HHHHHHHTCGGGTTEEEECCCGGGEEEHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCccccCceEEEeCCCCcCCHHHHHHHHHHHhC
Confidence            999999987654 455654 4 468999999999999887

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=99.94  E-value=1.6e-26  Score=188.93  Aligned_cols=193  Identities=17%  Similarity=0.074  Sum_probs=148.8

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---C
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---G   82 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---~   82 (331)
                      |+||||||+|+||++++++|+++  +|++++|++     ...+.+..  +.    .. +++.+|+.|++++.++++   +
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~-----~~~~~~~~--~~----~~-~~~~~D~~~~~~~~~~~~~~~~   66 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRA-----GALAELAR--EV----GA-RALPADLADELEAKALLEEAGP   66 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCH-----HHHHHHHH--HH----TC-EECCCCTTSHHHHHHHHHHHCS
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCH-----HHHHHHHH--hc----cC-cEEEeeCCCHHHHHHHHHhcCC
Confidence            57999999999999999999998  999999976     22222111  11    12 788999999999999987   8


Q ss_pred             ccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChh
Q 020104           83 CTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVD  156 (331)
Q Consensus        83 ~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~  156 (331)
                      +|+|||+|+....      ...++ +..+++|+.++.++++++++.+ .+++|++||...+..                 
T Consensus        67 id~vi~~ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~-~~~iv~~sS~~~~~~-----------------  127 (207)
T 2yut_A           67 LDLLVHAVGKAGRASVREAGRDLV-EEMLAAHLLTAAFVLKHARFQK-GARAVFFGAYPRYVQ-----------------  127 (207)
T ss_dssp             EEEEEECCCCCCCBCSCC---CHH-HHHHHHHHHHHHHHHHHCCEEE-EEEEEEECCCHHHHS-----------------
T ss_pred             CCEEEECCCcCCCCChhhCCHHHH-HHHHHHHhHHHHHHHHHHHhcC-CcEEEEEcChhhccC-----------------
Confidence            9999999986542      22233 3789999999999999997766 789999999887631                 


Q ss_pred             hhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccc
Q 020104          157 YIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSM  233 (331)
Q Consensus       157 ~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (331)
                           .++.+.|+.+|...|.+++.++.+   ++++++++||+.++++...               +.....     +.+
T Consensus       128 -----~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~t~~~~---------------~~~~~~-----~~~  182 (207)
T 2yut_A          128 -----VPGFAAYAAAKGALEAYLEAARKELLREGVHLVLVRLPAVATGLWA---------------PLGGPP-----KGA  182 (207)
T ss_dssp             -----STTBHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEECCCCBCSGGGG---------------GGTSCC-----TTC
T ss_pred             -----CCCcchHHHHHHHHHHHHHHHHHHHhhhCCEEEEEecCcccCCCcc---------------ccCCCC-----CCC
Confidence                 123568999999999999998877   5899999999999987411               111111     489


Q ss_pred             eeHHHHHHHHHHhhcCCCCCceE
Q 020104          234 VHVDDVARAHIFLLEYPDAKGRY  256 (331)
Q Consensus       234 i~v~D~a~~~~~~~~~~~~~~~~  256 (331)
                      ++++|+|++++.++.++..+.++
T Consensus       183 ~~~~dva~~~~~~~~~~~~~~~~  205 (207)
T 2yut_A          183 LSPEEAARKVLEGLFREPVPALL  205 (207)
T ss_dssp             BCHHHHHHHHHHHHC--CCCSCC
T ss_pred             CCHHHHHHHHHHHHhCCCCcccc
Confidence            99999999999999887655543

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=99.94  E-value=8.4e-26  Score=195.46  Aligned_cols=236  Identities=14%  Similarity=0.067  Sum_probs=165.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|+||||||+|+||++++++|+++|++|++++|+.     ...... ..+.+..  ..++.++.+|+.|.+++.++++ 
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~-----~~~~~~~~~l~~~~--~~~~~~~~~Dl~~~~~~~~~~~~   97 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM-----DVLKATAEQISSQT--GNKVHAIQCDVRDPDMVQNTVSE   97 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHHHH--SSCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHHhc--CCceEEEEeCCCCHHHHHHHHHH
Confidence            357899999999999999999999999999999986     222111 1111100  2468999999999998887765 


Q ss_pred             ------CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|+|||+||....      ...++ +..+++|+.++.++++++...    ....++|++||...+..      
T Consensus        98 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~-~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~------  170 (302)
T 1w6u_A           98 LIKVAGHPNIVINNAAGNFISPTERLSPNAW-KTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETG------  170 (302)
T ss_dssp             HHHHTCSCSEEEECCCCCCCSCGGGCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHC------
T ss_pred             HHHHcCCCCEEEECCCCCCCCccccCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcccccccC------
Confidence                  46999999985432      11123 378899999999998877532    11479999999876531      


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCC-CccHHHHHHHHhCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKF-AGSVRSSLALILGN  221 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~-~~~~~~~~~~~~~~  221 (331)
                                      .++...|+.+|.+.+.+++.++.+   ++++++++|||.+++++..... .....  .......
T Consensus       171 ----------------~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~--~~~~~~~  232 (302)
T 1w6u_A          171 ----------------SGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTF--EKEMIGR  232 (302)
T ss_dssp             ----------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHH--HHHHHTT
T ss_pred             ----------------CCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeccCCCcchhhhcccchhh--HHHHHhc
Confidence                            123568999999999999999887   6899999999999987432211 11111  1111111


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEec-cccCHHHHHHHHHhhCC
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSS-HTLTIQEMAEFLSAKYP  277 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~-~~~s~~e~~~~i~~~~~  277 (331)
                       ...     ..+++++|+|+++++++..+.   .+..+++++ ..++++|+++.+.+..+
T Consensus       233 -~p~-----~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~~~~~~~~~~~g  286 (302)
T 1w6u_A          233 -IPC-----GRLGTVEELANLAAFLCSDYASWINGAVIKFDGGEEVLISGEFNDLRKVTK  286 (302)
T ss_dssp             -CTT-----SSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTHHHHHHSTTGGGGGCCH
T ss_pred             -CCc-----CCCCCHHHHHHHHHHHcCCcccccCCCEEEECCCeeeccCCccccchhhcc
Confidence             111     268899999999999997543   355778755 56788888877766543

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.94  E-value=9.1e-26  Score=192.87  Aligned_cols=236  Identities=15%  Similarity=0.130  Sum_probs=155.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      ++|++|||||+|+||++++++|+++|++|++++|+.     +..+.. +.+........++.++.+|+.|++++.++++ 
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   79 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHA-----ERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILST   79 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHH
Confidence            357899999999999999999999999999999986     222211 1110001112468899999999998888876 


Q ss_pred             ------CccEEEEecccCCC----------CCCChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccce-eecC
Q 020104           82 ------GCTGVLHVATPVDF----------EDKEPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAA-VFYN  140 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~----------~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~-~~~~  140 (331)
                            ++|+|||+||....          ...++ +..+++|+.++.++++++...    +  .++|++||... +. +
T Consensus        80 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~~~~--g~iv~isS~~~~~~-~  155 (278)
T 1spx_A           80 TLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESY-DATLNLNLRSVIALTKKAVPHLSSTK--GEIVNISSIASGLH-A  155 (278)
T ss_dssp             HHHHHSCCCEEEECCC-------------CCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCTTSSSS-C
T ss_pred             HHHHcCCCCEEEECCCCCCCcccccccccCCHHHH-HHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEeccccccc-C
Confidence                  79999999986432          11223 378899999999999988754    4  69999999876 42 1


Q ss_pred             CCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCC---Ccc--HH
Q 020104          141 DKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKF---AGS--VR  212 (331)
Q Consensus       141 ~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~---~~~--~~  212 (331)
                                           .++...|+.+|.+.+.+++.++.+   +++++++++||.++++......   ...  +.
T Consensus       156 ---------------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~  214 (278)
T 1spx_A          156 ---------------------TPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFY  214 (278)
T ss_dssp             ---------------------CTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------H
T ss_pred             ---------------------CCCccHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccCccccccccCchhhhhhh
Confidence                                 122457999999999999988866   4899999999999988532210   000  00


Q ss_pred             HHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC----CCceEEEec-cccCHHHHHHHHHhh
Q 020104          213 SSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD----AKGRYICSS-HTLTIQEMAEFLSAK  275 (331)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~----~~~~~~~~~-~~~s~~e~~~~i~~~  275 (331)
                      ........ ....     ..+++++|+|+++++++..+.    .|..+++++ ..+++.|+++.+.+.
T Consensus       215 ~~~~~~~~-~~p~-----~~~~~~~dvA~~v~~l~s~~~~~~~tG~~~~vdgG~~~~~~~~~~~~~~~  276 (278)
T 1spx_A          215 STMATMKE-CVPA-----GVMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGGSSLIMGLHCQDFAKL  276 (278)
T ss_dssp             HHHHHHHH-HCTT-----SSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGGC-----------
T ss_pred             HHHHHHHh-cCCC-----cCCCCHHHHHHHHHHHcCccccCcccCcEEEECCCcccccCcccccHHHH
Confidence            00111110 0111     268899999999999997542    355677754 679999999988764

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=99.94  E-value=3e-25  Score=187.51  Aligned_cols=207  Identities=17%  Similarity=0.162  Sum_probs=156.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      ++|+||||||+|+||++++++|+++|++|++++|+..     ...           ..++.++.+|+.|++++.++++  
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~-----~~~-----------~~~~~~~~~Dv~d~~~v~~~~~~~   90 (260)
T 3un1_A           27 QQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIK-----PSA-----------DPDIHTVAGDISKPETADRIVREG   90 (260)
T ss_dssp             TCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCC-----CCS-----------STTEEEEESCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChh-----hcc-----------cCceEEEEccCCCHHHHHHHHHHH
Confidence            4578999999999999999999999999999999872     111           1368899999999998888775  


Q ss_pred             -----CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCCCCc
Q 020104           82 -----GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                           ++|++||+||.....      ..++ +..+++|+.++.++++++    ++.+ ..++|++||...+...      
T Consensus        91 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~~~~~------  162 (260)
T 3un1_A           91 IERFGRIDSLVNNAGVFLAKPFVEMTQEDY-DHNLGVNVAGFFHITQRAAAEMLKQG-SGHIVSITTSLVDQPM------  162 (260)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCTTTTSCB------
T ss_pred             HHHCCCCCEEEECCCCCCCCChhhCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEEechhhccCC------
Confidence                 799999999865421      1223 378889999999999987    4555 6799999997654210      


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE  223 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  223 (331)
                                    ...+...|+.+|.+.+.+++.++.+.   ++++++++||.++++....    ..   ...... ..
T Consensus       163 --------------~~~~~~~Y~~sKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~----~~---~~~~~~-~~  220 (260)
T 3un1_A          163 --------------VGMPSALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPMHPA----ET---HSTLAG-LH  220 (260)
T ss_dssp             --------------TTCCCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECCBCCTTSCG----GG---HHHHHT-TS
T ss_pred             --------------CCCccHHHHHHHHHHHHHHHHHHHHhCcCCeEEEEEeecCCCCCCCCH----HH---HHHHhc-cC
Confidence                          01235689999999999999999887   8999999999999985432    11   111111 11


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCCCC-CceEEEecc
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYPDA-KGRYICSSH  261 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~~-~~~~~~~~~  261 (331)
                      ..     ..+.+++|+|++++++...... |..++++++
T Consensus       221 p~-----~r~~~~~dva~av~~L~~~~~itG~~i~vdGG  254 (260)
T 3un1_A          221 PV-----GRMGEIRDVVDAVLYLEHAGFITGEILHVDGG  254 (260)
T ss_dssp             TT-----SSCBCHHHHHHHHHHHHHCTTCCSCEEEESTT
T ss_pred             CC-----CCCcCHHHHHHHHHHhcccCCCCCcEEEECCC
Confidence            22     3788999999999999655544 456777654

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=99.93  E-value=7.4e-26  Score=189.72  Aligned_cols=215  Identities=18%  Similarity=0.140  Sum_probs=155.3

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|+||||||+|+||++++++|+++|++|++++|+.     ...+.+.  .+.    .+++++.+|+.|.+++.++++  
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~-----~~~~~~~--~~~----~~~~~~~~D~~~~~~~~~~~~~~   74 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN-----SDLVSLA--KEC----PGIEPVCVDLGDWDATEKALGGI   74 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHH--HHS----TTCEEEECCTTCHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHH--Hhc----cCCCcEEecCCCHHHHHHHHHHc
Confidence            457899999999999999999999999999999986     2222111  111    356778999999999999886  


Q ss_pred             -CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCCCCCCcccCC
Q 020104           82 -GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYNDKDVDMMDET  150 (331)
Q Consensus        82 -~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~E~  150 (331)
                       ++|+|||+|+.....      ..++ +..+++|+.++.++++++...    +..+++|++||...+..           
T Consensus        75 ~~id~vi~~Ag~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~-----------  142 (244)
T 1cyd_A           75 GPVDLLVNNAALVIMQPFLEVTKEAF-DRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVT-----------  142 (244)
T ss_dssp             CCCSEEEECCCCCCCBCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSC-----------
T ss_pred             CCCCEEEECCcccCCCCcccCCHHHH-HHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcCC-----------
Confidence             489999999865421      1122 368899999999999887653    21369999999877631           


Q ss_pred             CCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHH-HHhCCCcccc
Q 020104          151 FWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLA-LILGNREEYG  226 (331)
Q Consensus       151 ~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~-~~~~~~~~~~  226 (331)
                                 .++...|+.+|.+.|.+++.++.+   .+++++++||+.++|+.......  ...+.. ...+.  .. 
T Consensus       143 -----------~~~~~~Y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~--~~~~~~~~~~~~--~~-  206 (244)
T 1cyd_A          143 -----------FPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSA--DPEFARKLKERH--PL-  206 (244)
T ss_dssp             -----------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTC--CHHHHHHHHHHS--TT-
T ss_pred             -----------CCCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcccccccc--CHHHHHHHHhcC--Cc-
Confidence                       122457999999999999998877   48999999999999874321100  011111 11111  11 


Q ss_pred             cCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          227 FLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       227 ~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                          +++++++|+|+++++++..+.   .+..+++++.
T Consensus       207 ----~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG  240 (244)
T 1cyd_A          207 ----RKFAEVEDVVNSILFLLSDRSASTSGGGILVDAG  240 (244)
T ss_dssp             ----SSCBCHHHHHHHHHHHHSGGGTTCCSSEEEESTT
T ss_pred             ----cCCCCHHHHHHHHHHHhCchhhcccCCEEEECCC
Confidence                489999999999999997653   2446666553

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=99.93  E-value=1.8e-25  Score=189.20  Aligned_cols=222  Identities=14%  Similarity=0.096  Sum_probs=157.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|+||||||+|+||++++++|+++|++|++++|+.     ..... .+.+..   ...++.++.+|+.|.+++.++++ 
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~-----~~~~~~~~~l~~---~~~~~~~~~~D~~~~~~~~~~~~~   83 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDE-----AMATKAVEDLRM---EGHDVSSVVMDVTNTESVQNAVRS   83 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHh---cCCceEEEEecCCCHHHHHHHHHH
Confidence            357899999999999999999999999999999986     22211 111111   12468999999999998888775 


Q ss_pred             ------CccEEEEecccCC-CC---CCCh--hhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVD-FE---DKEP--EEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~-~~---~~~~--~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|+|||+|+... ..   ..+.  .+..+++|+.++.++++++..    .+ ..++|++||...+... +   
T Consensus        84 ~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~~~~-~---  158 (260)
T 3awd_A           84 VHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQK-QGVIVAIGSMSGLIVN-R---  158 (260)
T ss_dssp             HHHHHSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSCC-S---
T ss_pred             HHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcC-CCEEEEEecchhcccC-C---
Confidence                  6899999998643 11   1111  137889999999999988764    34 5799999997654210 0   


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                      ..|.+.|+.+|.+.|.+++.++.+   ++++++++||+.++++.......  ........... 
T Consensus       159 ----------------~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~~~--~~~~~~~~~~~-  219 (260)
T 3awd_A          159 ----------------PQQQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTRFGME--KPELYDAWIAG-  219 (260)
T ss_dssp             ----------------SSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTHHHHT--CHHHHHHHHHT-
T ss_pred             ----------------CCCccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeeccchhhcccC--ChHHHHHHHhc-
Confidence                            122368999999999999998887   68999999999999986431100  01111111111 


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEeccc
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSHT  262 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~~  262 (331)
                      ...     ..+++++|+|+++++++..+.   .+..++++++.
T Consensus       220 ~~~-----~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~  257 (260)
T 3awd_A          220 TPM-----GRVGQPDEVASVVQFLASDAASLMTGAIVNVDAGF  257 (260)
T ss_dssp             CTT-----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred             CCc-----CCCCCHHHHHHHHHHHhCchhccCCCcEEEECCce
Confidence            111     268899999999999997532   34467887653

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=99.93  E-value=4.5e-26  Score=185.51  Aligned_cols=188  Identities=17%  Similarity=0.120  Sum_probs=144.9

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG--   82 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--   82 (331)
                      +|+||||||+|+||++++++|+ +|++|++++|+.                     .   .+.+|+.|++++.+++++  
T Consensus         3 kM~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~---------------------~---~~~~D~~~~~~~~~~~~~~~   57 (202)
T 3d7l_A            3 AMKILLIGASGTLGSAVKERLE-KKAEVITAGRHS---------------------G---DVTVDITNIDSIKKMYEQVG   57 (202)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSS---------------------S---SEECCTTCHHHHHHHHHHHC
T ss_pred             CcEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCc---------------------c---ceeeecCCHHHHHHHHHHhC
Confidence            3589999999999999999999 999999999987                     1   467999999999888864  


Q ss_pred             -ccEEEEecccCCCCC---CCh--hhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCCCCcccCCCCCCh
Q 020104           83 -CTGVLHVATPVDFED---KEP--EEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKDVDMMDETFWSDV  155 (331)
Q Consensus        83 -~d~Vih~a~~~~~~~---~~~--~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~  155 (331)
                       +|+|||+|+......   .+.  ....+++|+.++.++++++.+.- ..+++|++||...+.  +              
T Consensus        58 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~--~--------------  121 (202)
T 3d7l_A           58 KVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMMED--P--------------  121 (202)
T ss_dssp             CEEEEEECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECCGGGTS--C--------------
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcchhhcC--C--------------
Confidence             899999998653211   111  13677899999999999998761 016999999976542  1              


Q ss_pred             hhhhhcCCCCchhHhhHHHHHHHHHHHHHHc--CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccc
Q 020104          156 DYIRKLDSWGKSYAISKTLTERAALEFAEEH--GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSM  233 (331)
Q Consensus       156 ~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (331)
                            .++...|+.+|...|.+++.++.+.  +++++++||+.++++...              .+...     ..+++
T Consensus       122 ------~~~~~~Y~~sK~~~~~~~~~~~~e~~~gi~v~~v~pg~v~~~~~~--------------~~~~~-----~~~~~  176 (202)
T 3d7l_A          122 ------IVQGASAAMANGAVTAFAKSAAIEMPRGIRINTVSPNVLEESWDK--------------LEPFF-----EGFLP  176 (202)
T ss_dssp             ------CTTCHHHHHHHHHHHHHHHHHTTSCSTTCEEEEEEECCBGGGHHH--------------HGGGS-----TTCCC
T ss_pred             ------CCccHHHHHHHHHHHHHHHHHHHHccCCeEEEEEecCccCCchhh--------------hhhhc-----cccCC
Confidence                  1234579999999999999988654  899999999999987310              01111     12478


Q ss_pred             eeHHHHHHHHHHhhcCCCCCceEEE
Q 020104          234 VHVDDVARAHIFLLEYPDAKGRYIC  258 (331)
Q Consensus       234 i~v~D~a~~~~~~~~~~~~~~~~~~  258 (331)
                      ++++|+|++++.++.....+..|++
T Consensus       177 ~~~~dva~~~~~~~~~~~~G~~~~v  201 (202)
T 3d7l_A          177 VPAAKVARAFEKSVFGAQTGESYQV  201 (202)
T ss_dssp             BCHHHHHHHHHHHHHSCCCSCEEEE
T ss_pred             CCHHHHHHHHHHhhhccccCceEec
Confidence            9999999999998865545667775

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=99.93  E-value=1.3e-24  Score=184.91  Aligned_cols=216  Identities=17%  Similarity=0.083  Sum_probs=159.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+.     +..+....  ++   ..++.++.+|+.|.+++.++++  
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~-----~~~~~~~~--~~---~~~~~~~~~Dv~~~~~v~~~~~~~   79 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGARVVLADLPE-----TDLAGAAA--SV---GRGAVHHVVDLTNEVSVRALIDFT   79 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTT-----SCHHHHHH--HH---CTTCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCH-----HHHHHHHH--Hh---CCCeEEEECCCCCHHHHHHHHHHH
Confidence            457899999999999999999999999999999987     33222211  11   2467889999999998888875  


Q ss_pred             -----CccEEEEecccCCC--------CCCChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCCC
Q 020104           82 -----GCTGVLHVATPVDF--------EDKEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~--------~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                           ++|++||+|+....        ..+++ +..+++|+.++.++++++    ++.+ ..++|++||...+..     
T Consensus        80 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~~~~-----  152 (271)
T 3tzq_B           80 IDTFGRLDIVDNNAAHSDPADMLVTQMTVDVW-DDTFTVNARGTMLMCKYAIPRLISAG-GGAIVNISSATAHAA-----  152 (271)
T ss_dssp             HHHHSCCCEEEECCCCCCTTCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTT-CEEEEEECCGGGTSB-----
T ss_pred             HHHcCCCCEEEECCCCCCCCCCccccCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEECCHHHcCC-----
Confidence                 79999999997532        11122 378999999999999988    5555 679999999876531     


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                                       .++...|+.+|.+.+.+++.++.+   ++++++.++||.++++........   ........ 
T Consensus       153 -----------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~---~~~~~~~~-  211 (271)
T 3tzq_B          153 -----------------YDMSTAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRLEVGLPQ---PIVDIFAT-  211 (271)
T ss_dssp             -----------------CSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTC---CH---HHHHHHHT-
T ss_pred             -----------------CCCChHHHHHHHHHHHHHHHHHHHHhhcCEEEEEEEeCCCcCccccccCCH---HHHHHHHh-
Confidence                             123568999999999999999887   589999999999999865422211   11121111 


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEeccc
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSHT  262 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~~  262 (331)
                      ....     ..+.+.+|+|+++++++....   .|..++++++.
T Consensus       212 ~~~~-----~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~  250 (271)
T 3tzq_B          212 HHLA-----GRIGEPHEIAELVCFLASDRAAFITGQVIAADSGL  250 (271)
T ss_dssp             TSTT-----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred             cCCC-----CCCcCHHHHHHHHHHHhCcccCCcCCCEEEECCCc
Confidence            1122     267899999999999997643   24567776653

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=99.93  E-value=6.1e-26  Score=194.14  Aligned_cols=239  Identities=19%  Similarity=0.179  Sum_probs=168.4

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      .++|++|||||+|+||++++++|+++|++|++++|+.     +..+. .+.+.+......++.++.+|+.|.+++.++++
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~-----~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~   83 (281)
T 3svt_A            9 FQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNP-----DKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVD   83 (281)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHH
Confidence            3467899999999999999999999999999999987     22222 22222222222378899999999998887775


Q ss_pred             -------CccEEEEecccCCC-------CCCChhhHHHHHHHHHHHHHHHHHHhcC---CccEEEEecccceeecCCCCC
Q 020104           82 -------GCTGVLHVATPVDF-------EDKEPEEVITQRAINGTLGILKSCLKSG---TVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 -------~~d~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~  144 (331)
                             ++|++||+|+....       ..+++ +..+++|+.++.++++++...-   ...++|++||...+..     
T Consensus        84 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~-~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-----  157 (281)
T 3svt_A           84 AVTAWHGRLHGVVHCAGGSENIGPITQVDSEAW-RRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASNT-----  157 (281)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSC-----
T ss_pred             HHHHHcCCCCEEEECCCcCCCCCCcccCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcCC-----
Confidence                   68999999996321       11122 3788999999999999876542   1359999999876631     


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                                       .++...|+.+|.+.+.+++.++.++   +++++.++||.++++....... .. ....... .
T Consensus       158 -----------------~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~-~~-~~~~~~~-~  217 (281)
T 3svt_A          158 -----------------HRWFGAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLVAAITE-SA-ELSSDYA-M  217 (281)
T ss_dssp             -----------------CTTCTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHT-CH-HHHHHHH-H
T ss_pred             -----------------CCCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhccc-CH-HHHHHHH-h
Confidence                             1224579999999999999988775   5999999999998874221000 00 0111111 0


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEec-cccC-HHHHHHHHHhhCC
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSS-HTLT-IQEMAEFLSAKYP  277 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~-~~~s-~~e~~~~i~~~~~  277 (331)
                      ...+     ..+.+++|+|+++++++....   .+..+++++ ..++ ..|+++.+.+.++
T Consensus       218 ~~p~-----~r~~~~~dva~~~~~l~s~~~~~itG~~~~vdgG~~~~~~~~~~~~~~~~~~  273 (281)
T 3svt_A          218 CTPL-----PRQGEVEDVANMAMFLLSDAASFVTGQVINVDGGQMLRRGPDFSAMLEPVFG  273 (281)
T ss_dssp             HCSS-----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGSCCCCCHHHHHHHHC
T ss_pred             cCCC-----CCCCCHHHHHHHHHHHhCcccCCCCCCEEEeCCChhcccCCcchhccccccC
Confidence            1122     267899999999999998643   355778854 4555 6778888877665

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=99.93  E-value=4.7e-25  Score=186.41  Aligned_cols=219  Identities=17%  Similarity=0.168  Sum_probs=156.1

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      +|++|||||+|+||++++++|+++|++|++++|+.     +.......  ++   ..++.++.+|+.|++++.++++   
T Consensus         8 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~~--~~---~~~~~~~~~D~~~~~~v~~~~~~~~   77 (259)
T 4e6p_A            8 GKSALITGSARGIGRAFAEAYVREGATVAIADIDI-----ERARQAAA--EI---GPAAYAVQMDVTRQDSIDAAIAATV   77 (259)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHH--HH---CTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHH--Hh---CCCceEEEeeCCCHHHHHHHHHHHH
Confidence            47899999999999999999999999999999986     22222111  11   2467899999999998888876   


Q ss_pred             ----CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCCCCCCcc
Q 020104           82 ----GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 ----~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                          ++|+|||+||.....      .+++ +..+++|+.++.++++++...    +...++|++||...+..        
T Consensus        78 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~-~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~--------  148 (259)
T 4e6p_A           78 EHAGGLDILVNNAALFDLAPIVEITRESY-EKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRRG--------  148 (259)
T ss_dssp             HHSSSCCEEEECCCCCCCBCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSC--------
T ss_pred             HHcCCCCEEEECCCcCCCCCcccCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhccC--------
Confidence                799999999965421      1223 377889999999999987643    11359999999876531        


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC--
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR--  222 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--  222 (331)
                                    .++...|+.+|.+.+.+++.++.+.   +++++.++||.++++....     ............  
T Consensus       149 --------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~-----~~~~~~~~~~~~~~  209 (259)
T 4e6p_A          149 --------------EALVAIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGEHWDG-----VDALFARYENRPRG  209 (259)
T ss_dssp             --------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTHHH-----HHHHHHHHHTCCTT
T ss_pred             --------------CCCChHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEECCCccchhhh-----hhhhhhhhccCChH
Confidence                          1224579999999999999998765   8999999999999885221     101111111000  


Q ss_pred             ---cccccCC-CccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          223 ---EEYGFLL-NTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       223 ---~~~~~~~-~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                         ..+.... ...+.+++|+|+++++++....   .|..++++++
T Consensus       210 ~~~~~~~~~~p~~r~~~~~dva~~v~~L~s~~~~~itG~~i~vdgG  255 (259)
T 4e6p_A          210 EKKRLVGEAVPFGRMGTAEDLTGMAIFLASAESDYIVSQTYNVDGG  255 (259)
T ss_dssp             HHHHHHHHHSTTSSCBCTHHHHHHHHHTTSGGGTTCCSCEEEESTT
T ss_pred             HHHHHHhccCCCCCCcCHHHHHHHHHHHhCCccCCCCCCEEEECcC
Confidence               0001111 1478999999999999987543   2557888654

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=99.93  E-value=3e-25  Score=186.11  Aligned_cols=217  Identities=14%  Similarity=0.155  Sum_probs=157.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      ++|++|||||+|+||++++++|+++|++|++++|+..    +..+.. +.+..   ...++.++.+|+.|.+++.++++ 
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~Dv~d~~~v~~~~~~   75 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSK----EKAEAVVEEIKA---KGVDSFAIQANVADADEVKAMIKE   75 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH----HHHHHHHHHHHH---TTSCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCH----HHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHH
Confidence            3578999999999999999999999999999888641    111111 11111   12568899999999998888775 


Q ss_pred             ------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|++||+||.....      .+++ +..+++|+.++.++++++    ++.+ ..++|++||...+..      
T Consensus        76 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~-~~~~~vN~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~------  147 (246)
T 3osu_A           76 VVSQFGSLDVLVNNAGITRDNLLMRMKEQEW-DDVIDTNLKGVFNCIQKATPQMLRQR-SGAIINLSSVVGAVG------  147 (246)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCTTTCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHHC------
T ss_pred             HHHHcCCCCEEEECCCCCCCCCcccCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEcchhhcCC------
Confidence                  789999999965421      1123 368999999999999988    4555 579999999776531      


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                      .++...|+.+|.+.+.+.+.++.+   ++++++.++||.+.++......    ......... .
T Consensus       148 ----------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~----~~~~~~~~~-~  206 (246)
T 3osu_A          148 ----------------NPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALS----DELKEQMLT-Q  206 (246)
T ss_dssp             ----------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCCSCSC----HHHHHHHHT-T
T ss_pred             ----------------CCCChHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECCCcCCcccccC----HHHHHHHHh-c
Confidence                            123558999999999999988874   4799999999999988643311    111222111 1


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCCC---CceEEEecc
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPDA---KGRYICSSH  261 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~---~~~~~~~~~  261 (331)
                      ..+     ..+.+.+|+|+++++++..+..   |..++++++
T Consensus       207 ~p~-----~r~~~~~dva~~v~~l~s~~~~~itG~~i~vdgG  243 (246)
T 3osu_A          207 IPL-----ARFGQDTDIANTVAFLASDKAKYITGQTIHVNGG  243 (246)
T ss_dssp             CTT-----CSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred             CCC-----CCCcCHHHHHHHHHHHhCccccCCCCCEEEeCCC
Confidence            222     2678999999999999976532   556777654

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=99.93  E-value=1e-24  Score=183.49  Aligned_cols=218  Identities=16%  Similarity=0.131  Sum_probs=155.3

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      +|++|||||+|+||++++++|+++|++|++++|+.     ...+.. ..+.  .....++.++.+|+.|.+++.++++  
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~   74 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSA-----ETLEETARTHW--HAYADKVLRVRADVADEGDVNAAIAAT   74 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHS--TTTGGGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHH--HhcCCcEEEEEecCCCHHHHHHHHHHH
Confidence            57899999999999999999999999999999986     222221 1110  1112468999999999998888875  


Q ss_pred             -----CccEEEEecccCCCCC---------CChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCC
Q 020104           82 -----GCTGVLHVATPVDFED---------KEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~~---------~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~  143 (331)
                           ++|+|||+|+......         .++ +..+++|+.++.++++++.    +.+ .+++|++||...+..    
T Consensus        75 ~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~-~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~isS~~~~~~----  148 (250)
T 2cfc_A           75 MEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQF-DKVMAVNVRGIFLGCRAVLPHMLLQG-AGVIVNIASVASLVA----  148 (250)
T ss_dssp             HHHHSCCCEEEECCCCCCCTTCCSGGGSCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSC----
T ss_pred             HHHhCCCCEEEECCCCCCCCCcchhhhCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEECChhhccC----
Confidence                 7999999998654221         123 3788899999877666554    445 689999999876531    


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhC
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILG  220 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~  220 (331)
                                        .++...|+.+|.+.+.+++.++.+.   +++++++||+.++++........  .........
T Consensus       149 ------------------~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~--~~~~~~~~~  208 (250)
T 2cfc_A          149 ------------------FPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLDQ--PELRDQVLA  208 (250)
T ss_dssp             ------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTTHHHHTS--HHHHHHHHT
T ss_pred             ------------------CCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccCccccccCC--HHHHHHHHh
Confidence                              1224589999999999999988765   89999999999999864320000  111111111


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      . ...     ..+.+.+|+|+++++++..+.   .+..++++++
T Consensus       209 ~-~~~-----~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG  246 (250)
T 2cfc_A          209 R-IPQ-----KEIGTAAQVADAVMFLAGEDATYVNGAALVMDGA  246 (250)
T ss_dssp             T-CTT-----CSCBCHHHHHHHHHHHHSTTCTTCCSCEEEESTT
T ss_pred             c-CCC-----CCCcCHHHHHHHHHHHcCchhhcccCCEEEECCc
Confidence            1 111     268899999999999998653   2446677654

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=99.93  E-value=5.4e-25  Score=184.83  Aligned_cols=219  Identities=14%  Similarity=0.116  Sum_probs=149.0

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEE-ecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHH
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTT-VRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDA   78 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~   78 (331)
                      |+..+|+||||||+|+||++++++|+++|++|+++ .|+.     ...+.. +.+..   ...++.++.+|+.|++++.+
T Consensus         1 M~l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~   72 (247)
T 2hq1_A            1 MQLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPAS-----TSLDATAEEFKA---AGINVVVAKGDVKNPEDVEN   72 (247)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTC-----SHHHHHHHHHHH---TTCCEEEEESCTTSHHHHHH
T ss_pred             CCCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCH-----HHHHHHHHHHHh---cCCcEEEEECCCCCHHHHHH
Confidence            66667899999999999999999999999999998 4554     221111 11111   12468899999999998888


Q ss_pred             Hhc-------CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCC
Q 020104           79 AIA-------GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYND  141 (331)
Q Consensus        79 ~~~-------~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~  141 (331)
                      +++       ++|+|||+|+....      ...++. ..+++|+.++.++++++..    .+ .+++|++||...+... 
T Consensus        73 ~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~-~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~~~-  149 (247)
T 2hq1_A           73 MVKTAMDAFGRIDILVNNAGITRDTLMLKMSEKDWD-DVLNTNLKSAYLCTKAVSKIMLKQK-SGKIINITSIAGIIGN-  149 (247)
T ss_dssp             HHHHHHHHHSCCCEEEECC---------------CH-HHHHHTHHHHHHHHHHHHHHHHHHT-CEEEEEECC--------
T ss_pred             HHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHH-HHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcChhhccCC-
Confidence            775       79999999986531      223444 8899999998888887654    45 6799999997544211 


Q ss_pred             CCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHH
Q 020104          142 KDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALI  218 (331)
Q Consensus       142 ~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~  218 (331)
                                           ++...|+.+|.+.+.+++.++.+.   ++++++++|+.+.++.... ..   .......
T Consensus       150 ---------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-~~---~~~~~~~  204 (247)
T 2hq1_A          150 ---------------------AGQANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTDMTDV-LP---DKVKEMY  204 (247)
T ss_dssp             -----------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT-SC---HHHHHHH
T ss_pred             ---------------------CCCcHhHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEeccchhh-cc---hHHHHHH
Confidence                                 124579999999999999988765   7999999999998763211 11   1111111


Q ss_pred             hCCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          219 LGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       219 ~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ... ...     ..+++++|+|+++++++..+.   .+..|+++++
T Consensus       205 ~~~-~~~-----~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG  244 (247)
T 2hq1_A          205 LNN-IPL-----KRFGTPEEVANVVGFLASDDSNYITGQVINIDGG  244 (247)
T ss_dssp             HTT-STT-----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             Hhh-CCC-----CCCCCHHHHHHHHHHHcCcccccccCcEEEeCCC
Confidence            111 111     268899999999999987542   3557888654

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=99.93  E-value=4.4e-25  Score=184.99  Aligned_cols=215  Identities=16%  Similarity=0.161  Sum_probs=154.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|+||||||+|+||++++++|+++|++|++++|+.     ...+.+.  .+.    .+++++.+|+.|.+++.++++  
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~-----~~~~~~~--~~~----~~~~~~~~D~~~~~~~~~~~~~~   74 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ-----ADLDSLV--REC----PGIEPVCVDLGDWEATERALGSV   74 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHH--HHS----TTCEEEECCTTCHHHHHHHHTTC
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHH--HHc----CCCCEEEEeCCCHHHHHHHHHHc
Confidence            457899999999999999999999999999999986     2222111  111    246778999999999999886  


Q ss_pred             -CccEEEEecccCCCC-----CCChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCCCCCCcccCCC
Q 020104           82 -GCTGVLHVATPVDFE-----DKEPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYNDKDVDMMDETF  151 (331)
Q Consensus        82 -~~d~Vih~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~E~~  151 (331)
                       ++|+|||+|+.....     ..+..+..+++|+.++.++++++...    +..+++|++||...+..            
T Consensus        75 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~------------  142 (244)
T 3d3w_A           75 GPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRA------------  142 (244)
T ss_dssp             CCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSC------------
T ss_pred             CCCCEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhccC------------
Confidence             589999999865421     11122378999999999988887653    21369999999776521            


Q ss_pred             CCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCC--CccHHHHHHHHhCCCcccc
Q 020104          152 WSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKF--AGSVRSSLALILGNREEYG  226 (331)
Q Consensus       152 ~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~  226 (331)
                                .++.+.|+.+|.+.|.+++.++.+   .+++++++||+.++++......  .....   ......  .. 
T Consensus       143 ----------~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~---~~~~~~--~~-  206 (244)
T 3d3w_A          143 ----------VTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAK---TMLNRI--PL-  206 (244)
T ss_dssp             ----------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTTTHHHHSCSTTHHH---HHHHTC--TT-
T ss_pred             ----------CCCCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccccccchhhhccChHHHH---HHHhhC--CC-
Confidence                      123568999999999999998876   4799999999999987532110  11111   111111  11 


Q ss_pred             cCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          227 FLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       227 ~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                          ..+++++|+|+++++++..+.   .+..|+++++
T Consensus       207 ----~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG  240 (244)
T 3d3w_A          207 ----GKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGG  240 (244)
T ss_dssp             ----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             ----CCCcCHHHHHHHHHHHcCccccCCCCCEEEECCC
Confidence                378999999999999997542   3456787654

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=99.93  E-value=3.5e-25  Score=188.90  Aligned_cols=225  Identities=19%  Similarity=0.104  Sum_probs=157.0

Q ss_pred             CCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            2 EEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         2 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      ...+|+||||||+|+||++++++|+++|++|++++|+..    ...+.+ ..+..   ...++.++.+|+.|.+++.+++
T Consensus        18 ~~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~----~~~~~~~~~l~~---~~~~~~~~~~D~~~~~~~~~~~   90 (274)
T 1ja9_A           18 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSS----KAAEEVVAELKK---LGAQGVAIQADISKPSEVVALF   90 (274)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH----HHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHH
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCch----HHHHHHHHHHHh---cCCcEEEEEecCCCHHHHHHHH
Confidence            334578999999999999999999999999999999431    111111 11111   1246889999999999888877


Q ss_pred             c-------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCCCCc
Q 020104           81 A-------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        81 ~-------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                      +       ++|+|||+|+.....      ..++ +..+++|+.++.++++++...- .-+++|++||...+..+      
T Consensus        91 ~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~------  163 (274)
T 1ja9_A           91 DKAVSHFGGLDFVMSNSGMEVWCDELEVTQELF-DKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMTG------  163 (274)
T ss_dssp             HHHHHHHSCEEEEECCCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCCS------
T ss_pred             HHHHHHcCCCCEEEECCCCCCCcccccCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcChHhccCC------
Confidence            6       799999999865421      1122 3788999999999999887651 01699999998766211      


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCC----CC----ccH-HHH
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPK----FA----GSV-RSS  214 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~----~~----~~~-~~~  214 (331)
                                     .++...|+.+|.+.|.+++.++.+.   +++++++|||.++++.....    .+    ... ...
T Consensus       164 ---------------~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~  228 (274)
T 1ja9_A          164 ---------------IPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKI  228 (274)
T ss_dssp             ---------------CCSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHH
T ss_pred             ---------------CCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccchhcccccccccccccCchHHH
Confidence                           1224579999999999999988775   89999999999987632200    00    000 111


Q ss_pred             HHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          215 LALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ...... ....     ..+++++|+|+++++++..+.   .+..|+++++
T Consensus       229 ~~~~~~-~~~~-----~~~~~~~dva~~i~~l~~~~~~~~~G~~~~v~gG  272 (274)
T 1ja9_A          229 DEGLAN-MNPL-----KRIGYPADIGRAVSALCQEESEWINGQVIKLTGG  272 (274)
T ss_dssp             HHHHHH-TSTT-----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             HHHHHh-cCCC-----CCccCHHHHHHHHHHHhCcccccccCcEEEecCC
Confidence            111111 1111     378999999999999997643   3557888664

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=99.93  E-value=3.1e-25  Score=188.39  Aligned_cols=218  Identities=16%  Similarity=0.171  Sum_probs=143.1

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHh-
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAI-   80 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-   80 (331)
                      ..+|+||||||+|+||++++++|+++|++|++++|+.     ...+. ...+..   ...++.++.+|+.|.+++.+++ 
T Consensus        12 l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~   83 (266)
T 1xq1_A           12 LKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNE-----YELNECLSKWQK---KGFQVTGSVCDASLRPEREKLMQ   83 (266)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHh---cCCeeEEEECCCCCHHHHHHHHH
Confidence            3457899999999999999999999999999999986     22221 111111   1246889999999998888776 


Q ss_pred             -------cCccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCC
Q 020104           81 -------AGCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        81 -------~~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~  143 (331)
                             .++|+|||+|+.....      ..++ +..+++|+.++.++++++    ++.+ .+++|++||...+..    
T Consensus        84 ~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~-~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~~----  157 (266)
T 1xq1_A           84 TVSSMFGGKLDILINNLGAIRSKPTLDYTAEDF-SFHISTNLESAYHLSQLAHPLLKASG-CGNIIFMSSIAGVVS----  157 (266)
T ss_dssp             HHHHHHTTCCSEEEEECCC------CCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHS-SCEEEEEC-----------
T ss_pred             HHHHHhCCCCcEEEECCCCCCCCChhhCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEccchhccC----
Confidence                   4689999999864421      1122 368899999999999988    4555 689999999876631    


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhC
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILG  220 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~  220 (331)
                                        .++...|+.+|.+.+.+++.++.+.   +++++++||+.++++........   ........
T Consensus       158 ------------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~---~~~~~~~~  216 (266)
T 1xq1_A          158 ------------------ASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVYDD---EFKKVVIS  216 (266)
T ss_dssp             ---------------------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC---------------------
T ss_pred             ------------------CCCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEeeCCCccchhhhhcCH---HHHHHHHh
Confidence                              1224579999999999999988774   89999999999999864321100   00010000


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                       ...+     ..+++++|+|+++++++..+.   .+..++++++
T Consensus       217 -~~~~-----~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG  254 (266)
T 1xq1_A          217 -RKPL-----GRFGEPEEVSSLVAFLCMPAASYITGQTICVDGG  254 (266)
T ss_dssp             -------------CCGGGGHHHHHHHTSGGGTTCCSCEEECCCC
T ss_pred             -cCCC-----CCCcCHHHHHHHHHHHcCccccCccCcEEEEcCC
Confidence             0111     267899999999999987542   2446776553

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=99.93  E-value=4.9e-25  Score=186.90  Aligned_cols=221  Identities=19%  Similarity=0.183  Sum_probs=155.5

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+||++|||||+|+||++++++|+++|++|++++|+..    ...+.+....  .....++.++.+|+.|.+++.++++ 
T Consensus         5 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~Dl~~~~~v~~~~~~   78 (264)
T 3i4f_A            5 RFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDT----TAMETMKETY--KDVEERLQFVQADVTKKEDLHKIVEE   78 (264)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH----HHHHHHHHHT--GGGGGGEEEEECCTTSHHHHHHHHHH
T ss_pred             cccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCCh----HHHHHHHHHH--HhcCCceEEEEecCCCHHHHHHHHHH
Confidence            45788999999999999999999999999999988762    1111111111  1112478999999999998888775 


Q ss_pred             ------CccEEEEecccCC--C------CCCChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCC
Q 020104           82 ------GCTGVLHVATPVD--F------EDKEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        82 ------~~d~Vih~a~~~~--~------~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~  143 (331)
                            ++|+|||+||...  .      ..+++ +..+++|+.++.++++++    ++.+ ..++|++||........  
T Consensus        79 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~iss~~~~~~~~--  154 (264)
T 3i4f_A           79 AMSHFGKIDFLINNAGPYVFERKKLVDYEEDEW-NEMIQGNLTAVFHLLKLVVPVMRKQN-FGRIINYGFQGADSAPG--  154 (264)
T ss_dssp             HHHHHSCCCEEECCCCCCCCSCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCTTGGGCCC--
T ss_pred             HHHHhCCCCEEEECCcccccCCCccccCCHHHH-HHHHHhccHHHHHHHHHHHHHHHhcC-CCeEEEEeechhcccCC--
Confidence                  7899999999321  1      11122 378899999999999988    5555 67999999975442110  


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhC
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILG  220 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~  220 (331)
                                        .++...|+.+|.+.+.+++.++.+   .++++++++||.++++....    ......... .
T Consensus       155 ------------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~----~~~~~~~~~-~  211 (264)
T 3i4f_A          155 ------------------WIYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEMKEA----TIQEARQLK-E  211 (264)
T ss_dssp             ------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCGGGGSC----CHHHHHHC---
T ss_pred             ------------------CCCCchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEccCCccCccchh----ccHHHHHHH-h
Confidence                              123468999999999999998877   58999999999999885332    111111111 1


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ....+     ..+.+.+|+|+++++++..+.   .|..++++++
T Consensus       212 ~~~p~-----~r~~~~~dva~~v~~l~s~~~~~itG~~i~vdGG  250 (264)
T 3i4f_A          212 HNTPI-----GRSGTGEDIARTISFLCEDDSDMITGTIIEVTGA  250 (264)
T ss_dssp             -----------CCCCHHHHHHHHHHHHSGGGTTCCSCEEEESCS
T ss_pred             hcCCC-----CCCcCHHHHHHHHHHHcCcccCCCCCcEEEEcCc
Confidence            11122     267899999999999998643   2556777653

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=99.93  E-value=2.9e-25  Score=186.59  Aligned_cols=217  Identities=16%  Similarity=0.087  Sum_probs=154.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccc-cccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLS-FLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      ++|+||||||+|+||++++++|+++|++|++++|+.     ...+.+. .+.+.  ...++.++.+|+.|.+++.++++ 
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~   78 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSG-----ERAKAVAEEIANK--YGVKAHGVEMNLLSEESINKAFEE   78 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSH-----HHHHHHHHHHHHH--HCCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCh-----HHHHHHHHHHHhh--cCCceEEEEccCCCHHHHHHHHHH
Confidence            457899999999999999999999999999999986     2222111 11100  01468899999999998888875 


Q ss_pred             ------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|+|||+|+.....      ..++ +..+++|+.++.++++++    ++.+ .+++|++||...+...     
T Consensus        79 ~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~-~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~~~-----  151 (248)
T 2pnf_A           79 IYNLVDGIDILVNNAGITRDKLFLRMSLLDW-EEVLKVNLTGTFLVTQNSLRKMIKQR-WGRIVNISSVVGFTGN-----  151 (248)
T ss_dssp             HHHHSSCCSEEEECCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHCHHHHHHT-CEEEEEECCHHHHHCC-----
T ss_pred             HHHhcCCCCEEEECCCCCCCCccccCCHHHH-HHHHhhhhHHHHHHHHHHHHHHHhcC-CcEEEEEccHHhcCCC-----
Confidence                  799999999865421      1123 378999999996666654    4455 6899999997655311     


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                       ++...|+.+|.+.+.+++.++.+.   +++++++||+.++++.... ..   .......... 
T Consensus       152 -----------------~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~-~~---~~~~~~~~~~-  209 (248)
T 2pnf_A          152 -----------------VGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAV-LS---EEIKQKYKEQ-  209 (248)
T ss_dssp             -----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGG-SC---HHHHHHHHHT-
T ss_pred             -----------------CCCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeceecCchhhh-cc---HHHHHHHHhc-
Confidence                             124579999999999999888764   7999999999999875332 11   1111111111 


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ...     ..+++++|+|+++++++....   .+..|+++++
T Consensus       210 ~~~-----~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg  246 (248)
T 2pnf_A          210 IPL-----GRFGSPEEVANVVLFLCSELASYITGEVIHVNGG  246 (248)
T ss_dssp             CTT-----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             CCC-----CCccCHHHHHHHHHHHhCchhhcCCCcEEEeCCC
Confidence            111     268899999999999997532   3557777654

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=99.93  E-value=2.6e-24  Score=181.63  Aligned_cols=217  Identities=18%  Similarity=0.147  Sum_probs=152.2

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      ..+|++|||||+|+||++++++|+++|++|++++|+..     ..+...  .++   ..++.++.+|+.|.+++.++++ 
T Consensus         5 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~-----~~~~~~--~~~---~~~~~~~~~Dv~~~~~v~~~~~~   74 (257)
T 3tpc_A            5 LKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPP-----AGEEPA--AEL---GAAVRFRNADVTNEADATAALAF   74 (257)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC----------------------CEEEECCTTCHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH-----HHHHHH--HHh---CCceEEEEccCCCHHHHHHHHHH
Confidence            34578999999999999999999999999999999872     222211  111   2467899999999998888775 


Q ss_pred             ------CccEEEEecccCCCC----------CCChhhHHHHHHHHHHHHHHHHHHhc---------CCccEEEEecccce
Q 020104           82 ------GCTGVLHVATPVDFE----------DKEPEEVITQRAINGTLGILKSCLKS---------GTVKRVVYTSSNAA  136 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~----------~~~~~~~~~~~n~~~~~~l~~~~~~~---------~~~~~~v~~SS~~~  136 (331)
                            ++|++||+||.....          .+++ +..+++|+.++.++++++...         +...++|++||...
T Consensus        75 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~  153 (257)
T 3tpc_A           75 AKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSF-ARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAA  153 (257)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCSEETTEECCHHHH-HHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHH
T ss_pred             HHHHcCCCCEEEECCCCCCCCccccccccCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhh
Confidence                  799999999965421          1223 378899999999999988753         11468999999876


Q ss_pred             eecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHH
Q 020104          137 VFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRS  213 (331)
Q Consensus       137 ~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~  213 (331)
                      +..                      .++...|+.+|.+.+.+.+.++.+   ++++++.++||.+.++.......    .
T Consensus       154 ~~~----------------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~----~  207 (257)
T 3tpc_A          154 FDG----------------------QIGQAAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMMAGMPQ----D  207 (257)
T ss_dssp             HHC----------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSCC------------
T ss_pred             ccC----------------------CCCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEeCCCCChhhccCCH----H
Confidence            631                      122458999999999999998877   58999999999999875332110    0


Q ss_pred             HHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCCCCc-eEEEecc
Q 020104          214 SLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDAKG-RYICSSH  261 (331)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~-~~~~~~~  261 (331)
                      ...... ....+    ...+.+.+|+|+++++++......| .+++++.
T Consensus       208 ~~~~~~-~~~p~----~~r~~~~~dva~~v~~l~s~~~itG~~i~vdGG  251 (257)
T 3tpc_A          208 VQDALA-ASVPF----PPRLGRAEEYAALVKHICENTMLNGEVIRLDGA  251 (257)
T ss_dssp             -------CCSSS----SCSCBCHHHHHHHHHHHHHCTTCCSCEEEESTT
T ss_pred             HHHHHH-hcCCC----CCCCCCHHHHHHHHHHHcccCCcCCcEEEECCC
Confidence            111111 11111    0268899999999999998755555 5667653

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.92  E-value=1.5e-24  Score=181.57  Aligned_cols=206  Identities=20%  Similarity=0.168  Sum_probs=154.1

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      +|+||||||+|+||++++++|+++|++|++++|+.     . .             ..+.++.+|+.|.+++.++++   
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~-----~-~-------------~~~~~~~~D~~~~~~~~~~~~~~~   62 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRR-----E-G-------------EDLIYVEGDVTREEDVRRAVARAQ   62 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSC-----C-S-------------SSSEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCc-----c-c-------------cceEEEeCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999999999999987     1 0             235789999999999988886   


Q ss_pred             ---CccEEEEecccCCCCC------C----ChhhHHHHHHHHHHHHHHHHHHhcC---------CccEEEEecccceeec
Q 020104           82 ---GCTGVLHVATPVDFED------K----EPEEVITQRAINGTLGILKSCLKSG---------TVKRVVYTSSNAAVFY  139 (331)
Q Consensus        82 ---~~d~Vih~a~~~~~~~------~----~~~~~~~~~n~~~~~~l~~~~~~~~---------~~~~~v~~SS~~~~~~  139 (331)
                         ++|+|||+|+......      .    ++ +..+++|+.++.++++++.+.-         ...++|++||...+..
T Consensus        63 ~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~  141 (242)
T 1uay_A           63 EEAPLFAVVSAAGVGLAEKILGKEGPHGLESF-RRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEG  141 (242)
T ss_dssp             HHSCEEEEEECCCCCCCCCSBCSSSBCCHHHH-HHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHC
T ss_pred             hhCCceEEEEcccccCcccccccccccchHHH-HHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccC
Confidence               7899999998654211      1    23 3788999999999999887541         0139999999887641


Q ss_pred             CCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHH
Q 020104          140 NDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLA  216 (331)
Q Consensus       140 ~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~  216 (331)
                                            .++...|+.+|.+.+.+++.++.+.   +++++++|||.++++..... .   .....
T Consensus       142 ----------------------~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~-~---~~~~~  195 (242)
T 1uay_A          142 ----------------------QIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGL-P---EKAKA  195 (242)
T ss_dssp             ----------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTS-C---HHHHH
T ss_pred             ----------------------CCCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccCcchhhhcc-c---hhHHH
Confidence                                  1235689999999999999888764   89999999999998753221 1   11112


Q ss_pred             HHhCCCcccccCCCccceeHHHHHHHHHHhhcCCCC-CceEEEecc
Q 020104          217 LILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDA-KGRYICSSH  261 (331)
Q Consensus       217 ~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~-~~~~~~~~~  261 (331)
                      ..... ..+.    ..+++++|+|+++++++..... +..+++++.
T Consensus       196 ~~~~~-~~~~----~~~~~~~dva~~~~~l~~~~~~~G~~~~v~gG  236 (242)
T 1uay_A          196 SLAAQ-VPFP----PRLGRPEEYAALVLHILENPMLNGEVVRLDGA  236 (242)
T ss_dssp             HHHTT-CCSS----CSCCCHHHHHHHHHHHHHCTTCCSCEEEESTT
T ss_pred             HHHhh-CCCc----ccCCCHHHHHHHHHHHhcCCCCCCcEEEEcCC
Confidence            22211 1110    2678999999999999987544 446777653

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=99.92  E-value=2.4e-25  Score=188.68  Aligned_cols=223  Identities=15%  Similarity=0.176  Sum_probs=155.8

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      ..+|++|||||+|+||++++++|+++|++|++++|+.     +..+.. +.+....  ..++.++.+|+.|.+++.++++
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~~~l~~~~--~~~~~~~~~D~~~~~~~~~~~~   77 (263)
T 3ai3_A            5 ISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQV-----DRLHEAARSLKEKF--GVRVLEVAVDVATPEGVDAVVE   77 (263)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHHHH--CCCEEEEECCTTSHHHHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCH-----HHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHH
Confidence            3457899999999999999999999999999999986     222211 1111100  1468899999999998888775


Q ss_pred             -------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCC
Q 020104           82 -------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 -------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                             ++|+|||+||.....      ..++ +..+++|+.++.++++++.    +.+ ..++|++||...+..     
T Consensus        78 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~-----  150 (263)
T 3ai3_A           78 SVRSSFGGADILVNNAGTGSNETIMEAADEKW-QFYWELLVMAAVRLARGLVPGMRARG-GGAIIHNASICAVQP-----  150 (263)
T ss_dssp             HHHHHHSSCSEEEECCCCCCCCCTTTCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSC-----
T ss_pred             HHHHHcCCCCEEEECCCCCCCCCcccCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECchhhcCC-----
Confidence                   799999999865421      1123 3788999999988888775    345 679999999877631     


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCC-------ccHHHH
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFA-------GSVRSS  214 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~-------~~~~~~  214 (331)
                                       .++...|+.+|.+.+.+++.++.+   ++++++++|||.++++.......       ......
T Consensus       151 -----------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~  213 (263)
T 3ai3_A          151 -----------------LWYEPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPDWIKTAKELTKDNGGDWKGY  213 (263)
T ss_dssp             -----------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHTTTTTCCHHHH
T ss_pred             -----------------CCCcchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhhhhHhhhcccCCcHHHH
Confidence                             122457999999999999998876   58999999999999874211000       000011


Q ss_pred             HHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          215 LALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ...........     ..+++++|+|+++++++..+.   .+..+++++.
T Consensus       214 ~~~~~~~~~p~-----~~~~~~~dvA~~~~~l~s~~~~~~~G~~~~vdgG  258 (263)
T 3ai3_A          214 LQSVADEHAPI-----KRFASPEELANFFVFLCSERATYSVGSAYFVDGG  258 (263)
T ss_dssp             HHHHHHHHCTT-----CSCBCHHHHHHHHHHHTSTTCTTCCSCEEEESTT
T ss_pred             HHHHHhcCCCC-----CCCcCHHHHHHHHHHHcCccccCCCCcEEEECCC
Confidence            11111000111     368999999999999997643   2456777653

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=99.92  E-value=3.7e-25  Score=186.48  Aligned_cols=217  Identities=16%  Similarity=0.148  Sum_probs=134.7

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHH
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      |...+|++|||||+|+||++++++|+++|++|++++|+.     +..+.+ ..+.+   ...++.++.+|+.|.+++.++
T Consensus         5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~   76 (253)
T 3qiv_A            5 MRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINA-----EAAEAVAKQIVA---DGGTAISVAVDVSDPESAKAM   76 (253)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHH---TTCEEEEEECCTTSHHHHHHH
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCH-----HHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHH
Confidence            455678999999999999999999999999999999987     222221 11111   125788999999999988887


Q ss_pred             hc-------CccEEEEecccCC---------CCCCChhhHHHHHHHHHHHHHHHH----HHhcCCccEEEEecccceeec
Q 020104           80 IA-------GCTGVLHVATPVD---------FEDKEPEEVITQRAINGTLGILKS----CLKSGTVKRVVYTSSNAAVFY  139 (331)
Q Consensus        80 ~~-------~~d~Vih~a~~~~---------~~~~~~~~~~~~~n~~~~~~l~~~----~~~~~~~~~~v~~SS~~~~~~  139 (331)
                      ++       ++|+|||+||...         ...+++ +..+++|+.++.++.++    +++.+ ..++|++||...+. 
T Consensus        77 ~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~-~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~-  153 (253)
T 3qiv_A           77 ADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYY-KKFMSVNLDGALWCTRAVYKKMTKRG-GGAIVNQSSTAAWL-  153 (253)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCGGGGGCTTTSCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECC------
T ss_pred             HHHHHHHcCCCCEEEECCCcCCCCCCcccccCCHHHH-HHHHhhhhHHHHHHHHHHHHHHHhcC-CCEEEEECCccccC-
Confidence            75       7999999998632         111223 37899999996655554    44555 57999999987651 


Q ss_pred             CCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHH
Q 020104          140 NDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLA  216 (331)
Q Consensus       140 ~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~  216 (331)
                                              +...|+.+|.+.+.+++.++.+.   +++++.++||.++++.........   ...
T Consensus       154 ------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~---~~~  206 (253)
T 3qiv_A          154 ------------------------YSNYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEANRTTTPKE---MVD  206 (253)
T ss_dssp             ------------------------------CCHHHHHHHHHHHHHHTTTTTEEEEEEEC---------------------
T ss_pred             ------------------------CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecCCcccchhhcCcHH---HHH
Confidence                                    12369999999999999999876   799999999999988543211110   011


Q ss_pred             HHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          217 LILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       217 ~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ... .....     ..+.+++|+|+++++++..+.   .|..|+++++
T Consensus       207 ~~~-~~~~~-----~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdgG  248 (253)
T 3qiv_A          207 DIV-KGLPL-----SRMGTPDDLVGMCLFLLSDEASWITGQIFNVDGG  248 (253)
T ss_dssp             -------------------CCHHHHHHHHHHSGGGTTCCSCEEEC---
T ss_pred             HHh-ccCCC-----CCCCCHHHHHHHHHHHcCccccCCCCCEEEECCC
Confidence            000 01111     256788999999999997544   3557777553

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=99.92  E-value=7.8e-25  Score=184.60  Aligned_cols=219  Identities=15%  Similarity=0.161  Sum_probs=152.3

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcE-EEEeCCCCCCccHHHHh--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERL-RIFHADLSHPDGFDAAI--   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~--   80 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+.     +..+...  .++   ..++ .++.+|+.|.+++.+++  
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~-----~~~~~~~--~~~---~~~~~~~~~~D~~~~~~~~~~~~~   79 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGARLILIDREA-----AALDRAA--QEL---GAAVAARIVADVTDAEAMTAAAAE   79 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHH--HHH---GGGEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHH--HHh---cccceeEEEEecCCHHHHHHHHHH
Confidence            346899999999999999999999999999999986     2222111  111   1345 88999999999888776  


Q ss_pred             ----cCccEEEEecccCCCC---CCC--hhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCCCCcc
Q 020104           81 ----AGCTGVLHVATPVDFE---DKE--PEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        81 ----~~~d~Vih~a~~~~~~---~~~--~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                          .++|+|||+||.....   ..+  ..+..+++|+.++.++++++    ++.+ .+++|++||...+... +     
T Consensus        80 ~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~~~-~-----  152 (254)
T 2wsb_A           80 AEAVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARG-AGAIVNLGSMSGTIVN-R-----  152 (254)
T ss_dssp             HHHHSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSCC-S-----
T ss_pred             HHhhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEecchhccCC-C-----
Confidence                3789999999865421   111  12377889999977766655    4455 6899999998765311 0     


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcc
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREE  224 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~  224 (331)
                                    ..|.+.|+.+|.+.+.+++.++.+.   +++++++||+.++++..... ... .......... ..
T Consensus       153 --------------~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~Pg~v~t~~~~~~-~~~-~~~~~~~~~~-~~  215 (254)
T 2wsb_A          153 --------------PQFASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATEMTLKM-RER-PELFETWLDM-TP  215 (254)
T ss_dssp             --------------SSCBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHHH-HTC-HHHHHHHHHT-ST
T ss_pred             --------------CCcchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecccCchhhhcc-ccC-hHHHHHHHhc-CC
Confidence                          1223689999999999999988775   89999999999998742210 000 0111111111 11


Q ss_pred             cccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          225 YGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       225 ~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      .     ..+++++|+|+++++++..+.   .+..++++++
T Consensus       216 ~-----~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG  250 (254)
T 2wsb_A          216 M-----GRCGEPSEIAAAALFLASPAASYVTGAILAVDGG  250 (254)
T ss_dssp             T-----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             C-----CCCCCHHHHHHHHHHHhCcccccccCCEEEECCC
Confidence            1     368899999999999987542   2446677665

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=99.92  E-value=9.9e-25  Score=185.06  Aligned_cols=225  Identities=16%  Similarity=0.147  Sum_probs=151.2

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCC----CCCCcEEEEeCCCCCCccHHHH
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLP----GASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      +|+||||||+|+||++++++|+++|++|++++|+.     ...+.. ..+.+..    ....++.++.+|+.|.+++.++
T Consensus         7 ~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   81 (264)
T 2pd6_A            7 SALALVTGAGSGIGRAVSVRLAGEGATVAACDLDR-----AAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCL   81 (264)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH-----HHHHHHHHTC------------CCEEEECCTTSHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCh-----HHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHH
Confidence            46899999999999999999999999999999986     222211 1111100    0014678999999999988887


Q ss_pred             hcC-------c-cEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCC
Q 020104           80 IAG-------C-TGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYND  141 (331)
Q Consensus        80 ~~~-------~-d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~  141 (331)
                      +++       + |+|||+|+....      ...++ +..+++|+.++.++++++...    +...++|++||...+. + 
T Consensus        82 ~~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~-~-  158 (264)
T 2pd6_A           82 LEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDW-DKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKV-G-  158 (264)
T ss_dssp             HHHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHH-C-
T ss_pred             HHHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHH-HHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhcc-C-
Confidence            753       4 999999986542      11223 378999999999999988764    2135999999976542 1 


Q ss_pred             CCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHH
Q 020104          142 KDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALI  218 (331)
Q Consensus       142 ~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~  218 (331)
                                          .++...|+.+|.+.+.+++.++.+   ++++++++||+.++++......    .......
T Consensus       159 --------------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~----~~~~~~~  214 (264)
T 2pd6_A          159 --------------------NVGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKVP----QKVVDKI  214 (264)
T ss_dssp             --------------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSCC--------------CT
T ss_pred             --------------------CCCChhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeecccccchhhcC----HHHHHHH
Confidence                                123457999999999999998877   6899999999999998643210    0000000


Q ss_pred             hCCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc-ccCHHH
Q 020104          219 LGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH-TLTIQE  267 (331)
Q Consensus       219 ~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~-~~s~~e  267 (331)
                      .. ....     ..+++++|+|+++++++..+.   .+..++++++ .++...
T Consensus       215 ~~-~~~~-----~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~~  261 (264)
T 2pd6_A          215 TE-MIPM-----GHLGDPEDVADVVAFLASEDSGYITGTSVEVTGGLFMAENL  261 (264)
T ss_dssp             GG-GCTT-----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC------
T ss_pred             HH-hCCC-----CCCCCHHHHHHHHHHHcCCcccCCCCCEEEECCCceecccc
Confidence            00 0111     267899999999999987542   2446677654 444443

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=99.92  E-value=2e-24  Score=182.59  Aligned_cols=209  Identities=15%  Similarity=0.176  Sum_probs=152.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|+||||||+|+||++++++|+++|++|++++|+.     +..+...  .++.   ..+.++.+|+.|++++.++++  
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~--~~~~---~~~~~~~~D~~~~~~v~~~~~~~   75 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILD-----EEGKAMA--AELA---DAARYVHLDVTQPAQWKAAVDTA   75 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHH--HHTG---GGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHH--HHhh---cCceEEEecCCCHHHHHHHHHHH
Confidence            357899999999999999999999999999999986     2222111  1111   247889999999998888876  


Q ss_pred             -----CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHH----HHhcCCccEEEEecccceeecCCCCCCc
Q 020104           82 -----GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKS----CLKSGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~----~~~~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                           ++|+|||+||.....      ..++ +..+++|+.++.+++++    +++.+ ..++|++||...+..       
T Consensus        76 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~-~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~-------  146 (260)
T 1nff_A           76 VTAFGGLHVLVNNAGILNIGTIEDYALTEW-QRILDVNLTGVFLGIRAVVKPMKEAG-RGSIINISSIEGLAG-------  146 (260)
T ss_dssp             HHHHSCCCEEEECCCCCCCBCTTTSCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSC-------
T ss_pred             HHHcCCCCEEEECCCCCCCCChhhCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEEeehhhcCC-------
Confidence                 799999999865421      1123 37889999999655554    44555 689999999876531       


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE  223 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  223 (331)
                                     .++...|+.+|.+.+.+++.++.+   ++++++++|||.++++...  ...           .. 
T Consensus       147 ---------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~--~~~-----------~~-  197 (260)
T 1nff_A          147 ---------------TVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTD--WVP-----------ED-  197 (260)
T ss_dssp             ---------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGT--TSC-----------TT-
T ss_pred             ---------------CCCchhHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCCCCccc--cch-----------hh-
Confidence                           122457999999999999998876   4899999999999988532  100           00 


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                       +.......+++.+|+|+++++++..+.   .+..+++++.
T Consensus       198 -~~~~~~~~~~~~~dvA~~v~~l~s~~~~~~~G~~~~v~gG  237 (260)
T 1nff_A          198 -IFQTALGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGG  237 (260)
T ss_dssp             -CSCCSSSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             -HHhCccCCCCCHHHHHHHHHHHhCccccCCcCCEEEECCC
Confidence             000011368899999999999997543   2456777654

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=99.92  E-value=3.5e-24  Score=184.16  Aligned_cols=225  Identities=15%  Similarity=0.072  Sum_probs=157.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|+||||||+|+||++++++|+++|++|++++|+.     ...+...  .++   ..++.++.+|+.|.+++.++++  
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~-----~~~~~~~--~~~---~~~~~~~~~Dl~d~~~v~~~~~~~   84 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTARELARRGATVIMAVRDT-----RKGEAAA--RTM---AGQVEVRELDLQDLSSVRRFADGV   84 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHH--TTS---SSEEEEEECCTTCHHHHHHHHHTC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHH--HHh---cCCeeEEEcCCCCHHHHHHHHHhc
Confidence            457899999999999999999999999999999987     2222211  111   2578999999999999999887  


Q ss_pred             -CccEEEEecccCCC----CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChh
Q 020104           82 -GCTGVLHVATPVDF----EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVD  156 (331)
Q Consensus        82 -~~d~Vih~a~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~  156 (331)
                       ++|+|||+||....    ...++. ..+++|+.++.++++++.... .+|+|++||...+... .......++.     
T Consensus        85 ~~iD~lv~nAg~~~~~~~~~~~~~~-~~~~vN~~g~~~l~~~~~~~~-~~riv~isS~~~~~~~-~~~~~~~~~~-----  156 (291)
T 3rd5_A           85 SGADVLINNAGIMAVPYALTVDGFE-SQIGTNHLGHFALTNLLLPRL-TDRVVTVSSMAHWPGR-INLEDLNWRS-----  156 (291)
T ss_dssp             CCEEEEEECCCCCSCCCCBCTTSCB-HHHHHHTHHHHHHHHHHGGGE-EEEEEEECCGGGTTCC-CCSSCTTCSS-----
T ss_pred             CCCCEEEECCcCCCCcccCCHHHHH-HHHHHHHHHHHHHHHHHHHHH-HhheeEeechhhccCC-CCcccccccc-----
Confidence             67999999996542    233444 899999999999999999887 6799999998876422 1111111111     


Q ss_pred             hhhhcCCCCchhHhhHHHHHHHHHHHHHHc---C--CcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCc
Q 020104          157 YIRKLDSWGKSYAISKTLTERAALEFAEEH---G--LDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNT  231 (331)
Q Consensus       157 ~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~--~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (331)
                         ...++...|+.+|.+.+.+++.++.++   +  ++++.++||.+..+.........    ......  ..    ..+
T Consensus       157 ---~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~~~~~~~----~~~~~~--~~----~~~  223 (291)
T 3rd5_A          157 ---RRYSPWLAYSQSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGASGRKL----GDALMS--AA----TRV  223 (291)
T ss_dssp             ---SCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC-----------------------------
T ss_pred             ---cCCCCcchHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEeeCCCCccccccccchHH----HHHHHH--HH----HHH
Confidence               012345689999999999999888765   4  99999999999876433211000    000000  00    112


Q ss_pred             cceeHHHHHHHHHHhhcCCCCCceE-EEe
Q 020104          232 SMVHVDDVARAHIFLLEYPDAKGRY-ICS  259 (331)
Q Consensus       232 ~~i~v~D~a~~~~~~~~~~~~~~~~-~~~  259 (331)
                      -....+|+|+++++++..+..+|.| .+.
T Consensus       224 ~~~~~~~~A~~~~~l~~~~~~~G~~~~vd  252 (291)
T 3rd5_A          224 VATDADFGARQTLYAASQDLPGDSFVGPR  252 (291)
T ss_dssp             -CHHHHHHHHHHHHHHHSCCCTTCEEEET
T ss_pred             HhCCHHHHHHHHHHHHcCCCCCCceeCCc
Confidence            3345999999999999887666655 454

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=99.92  E-value=4.1e-25  Score=186.74  Aligned_cols=221  Identities=16%  Similarity=0.145  Sum_probs=156.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecC-CCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRS-ELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      .+|+||||||+|+||++++++|+++|++|++++|+ .     ...+.+ ..+..   ...++.++.+|+.|++++.++++
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~-----~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~   77 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAP-----ANIDETIASMRA---DGGDAAFFAADLATSEACQQLVD   77 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCC-----TTHHHHHHHHHH---TTCEEEEEECCTTSHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCch-----hhHHHHHHHHHh---cCCceEEEECCCCCHHHHHHHHH
Confidence            35789999999999999999999999999999998 5     222221 11111   12468899999999999888876


Q ss_pred             -------CccEEEEeccc-CCCC---CC--ChhhHHHHHHHHHHHHHHHHHHhc--------CCccEEEEecccceeecC
Q 020104           82 -------GCTGVLHVATP-VDFE---DK--EPEEVITQRAINGTLGILKSCLKS--------GTVKRVVYTSSNAAVFYN  140 (331)
Q Consensus        82 -------~~d~Vih~a~~-~~~~---~~--~~~~~~~~~n~~~~~~l~~~~~~~--------~~~~~~v~~SS~~~~~~~  140 (331)
                             ++|+|||+|+. ....   ..  +..+..+++|+.++.++++++...        +...++|++||...+..+
T Consensus        78 ~~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~  157 (258)
T 3afn_B           78 EFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTGG  157 (258)
T ss_dssp             HHHHHHSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHCC
T ss_pred             HHHHHcCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccCC
Confidence                   79999999986 3211   11  112368899999999988876432        112699999997655200


Q ss_pred             CCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHH
Q 020104          141 DKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLAL  217 (331)
Q Consensus       141 ~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~  217 (331)
                                           .++...|+.+|.+.+.+++.++.+.   +++++++||+.++++.....    .......
T Consensus       158 ---------------------~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~----~~~~~~~  212 (258)
T 3afn_B          158 ---------------------GPGAGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFHADK----TQDVRDR  212 (258)
T ss_dssp             ---------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSGGGTTC----CHHHHHH
T ss_pred             ---------------------CCCchHHHHHHHHHHHHHHHHHHhhcccCeEEEEEeCCCccccccccc----CHHHHHH
Confidence                                 1235689999999999999988765   89999999999999854321    1111221


Q ss_pred             HhCCCcccccCCCccceeHHHHHHHHHHhhcCCC----CCceEEEecccc
Q 020104          218 ILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD----AKGRYICSSHTL  263 (331)
Q Consensus       218 ~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~----~~~~~~~~~~~~  263 (331)
                      .... ...     ..+++++|+|+++++++..+.    .+..|+++++..
T Consensus       213 ~~~~-~~~-----~~~~~~~dva~~~~~l~~~~~~~~~~G~~~~v~gg~~  256 (258)
T 3afn_B          213 ISNG-IPM-----GRFGTAEEMAPAFLFFASHLASGYITGQVLDINGGQY  256 (258)
T ss_dssp             HHTT-CTT-----CSCBCGGGTHHHHHHHHCHHHHTTCCSEEEEESTTSS
T ss_pred             Hhcc-CCC-----CcCCCHHHHHHHHHHHhCcchhccccCCEEeECCCcc
Confidence            2111 111     378999999999999997542    355778876543

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=99.92  E-value=7.8e-25  Score=185.25  Aligned_cols=218  Identities=20%  Similarity=0.162  Sum_probs=157.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+.     +..+. ...+.+..  ..++.++.+|+.|.+++.++++ 
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~-----~~~~~~~~~l~~~~--~~~~~~~~~Dv~~~~~v~~~~~~   81 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRST-----ADIDACVADLDQLG--SGKVIGVQTDVSDRAQCDALAGR   81 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHTTS--SSCEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHhhC--CCcEEEEEcCCCCHHHHHHHHHH
Confidence            457899999999999999999999999999999987     22222 12222211  1478999999999998888765 


Q ss_pred             ------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|++||+||.....      .+++ +..+++|+.++.++++++...    + ..++|++||......+     
T Consensus        82 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~-~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~~~~-----  154 (262)
T 3pk0_A           82 AVEEFGGIDVVCANAGVFPDAPLATMTPEQL-NGIFAVNVNGTFYAVQACLDALIASG-SGRVVLTSSITGPITG-----  154 (262)
T ss_dssp             HHHHHSCCSEEEECCCCCCCCCTTTCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHS-SCEEEEECCSBTTTBC-----
T ss_pred             HHHHhCCCCEEEECCCCCCCCChhhCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEechhhccCC-----
Confidence                  799999999965421      1122 367899999999988887654    5 5799999997643101     


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                      .++...|+.+|.+.+.+++.++.+   ++++++.++||.++++......    ......... .
T Consensus       155 ----------------~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~----~~~~~~~~~-~  213 (262)
T 3pk0_A          155 ----------------YPGWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGLLENG----EEYIASMAR-S  213 (262)
T ss_dssp             ----------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHTTC----HHHHHHHHT-T
T ss_pred             ----------------CCCChhhHHHHHHHHHHHHHHHHHHHhhCcEEEEEEeCcCcCccccccC----HHHHHHHHh-c
Confidence                            123458999999999999999887   5899999999999987432211    111111111 1


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ...     ..+.+.+|+|+++++++..+.   .|..+++++.
T Consensus       214 ~p~-----~r~~~p~dva~~v~~L~s~~~~~itG~~i~vdGG  250 (262)
T 3pk0_A          214 IPA-----GALGTPEDIGHLAAFLATKEAGYITGQAIAVDGG  250 (262)
T ss_dssp             STT-----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             CCC-----CCCcCHHHHHHHHHHHhCccccCCcCCEEEECCC
Confidence            122     267899999999999997653   3456777654

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=99.92  E-value=1.9e-24  Score=184.60  Aligned_cols=226  Identities=15%  Similarity=0.167  Sum_probs=153.3

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      ++|++|||||+|+||++++++|+++|++|++++|+..    +..+.. ..+...  ...++.++.+|+.|.+++.++++ 
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~----~~~~~~~~~~~~~--~~~~~~~~~~Dv~d~~~v~~~~~~   97 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAP----DEIRTVTDEVAGL--SSGTVLHHPADMTKPSEIADMMAM   97 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCH----HHHHHHHHHHHTT--CSSCEEEECCCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCh----HHHHHHHHHHhhc--cCCcEEEEeCCCCCHHHHHHHHHH
Confidence            4578999999999999999999999999999998541    111111 111111  12578999999999998888775 


Q ss_pred             ------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|++||+||.....      .+++ +..+++|+.++.++++++    ++.+ ..++|++||...+..      
T Consensus        98 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~------  169 (281)
T 3v2h_A           98 VADRFGGADILVNNAGVQFVEKIEDFPVEQW-DRIIAVNLSSSFHTIRGAIPPMKKKG-WGRIINIASAHGLVA------  169 (281)
T ss_dssp             HHHHTSSCSEEEECCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSC------
T ss_pred             HHHHCCCCCEEEECCCCCCCCCcccCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEECCcccccC------
Confidence                  689999999965422      1223 378999999999999987    4445 579999999776531      


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                      .+....|+.+|.+.+.+++.++.+.   +++++.++||.+.++............  .......
T Consensus       170 ----------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~--~~~~~~~  231 (281)
T 3v2h_A          170 ----------------SPFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQIPDQART--RGITEEQ  231 (281)
T ss_dssp             ----------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC----------------------
T ss_pred             ----------------CCCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEECCCCcCcchhhhcchhhhh--cCCCHHH
Confidence                            1224579999999999999988774   799999999999988543211111000  0000000


Q ss_pred             ---cccccCC-CccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          223 ---EEYGFLL-NTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       223 ---~~~~~~~-~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                         ..+.... ...+++++|+|+++++++..+.   .|..++++++
T Consensus       232 ~~~~~~~~~~p~~r~~~~edvA~~v~~L~s~~a~~itG~~i~vdGG  277 (281)
T 3v2h_A          232 VINEVMLKGQPTKKFITVEQVASLALYLAGDDAAQITGTHVSMDGG  277 (281)
T ss_dssp             --------CCTTCSCBCHHHHHHHHHHHHSSGGGGCCSCEEEESTT
T ss_pred             HHHHHHHhcCCCCCccCHHHHHHHHHHHcCCCcCCCCCcEEEECCC
Confidence               0011111 1479999999999999998654   3456777654

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=99.92  E-value=3.8e-24  Score=179.82  Aligned_cols=214  Identities=15%  Similarity=0.132  Sum_probs=150.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|+||||||+|+||+++++.|+++|++|++++|+.     +..+.+..  ++   ..++.++.+|+.+.+++.++++  
T Consensus        13 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~-----~~~~~~~~--~~---~~~~~~~~~D~~~~~~~~~~~~~~   82 (249)
T 3f9i_A           13 TGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNE-----EKLKSLGN--AL---KDNYTIEVCNLANKEECSNLISKT   82 (249)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHH--HH---CSSEEEEECCTTSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCH-----HHHHHHHH--Hh---ccCccEEEcCCCCHHHHHHHHHhc
Confidence            467999999999999999999999999999999987     22222211  11   1468899999999999998886  


Q ss_pred             -CccEEEEecccCC------CCCCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCcccCC
Q 020104           82 -GCTGVLHVATPVD------FEDKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDMMDET  150 (331)
Q Consensus        82 -~~d~Vih~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~  150 (331)
                       ++|+|||+||...      ....++. ..+++|+.++.++++++.    +.+ ..++|++||...+..           
T Consensus        83 ~~id~li~~Ag~~~~~~~~~~~~~~~~-~~~~~N~~~~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~-----------  149 (249)
T 3f9i_A           83 SNLDILVCNAGITSDTLAIRMKDQDFD-KVIDINLKANFILNREAIKKMIQKR-YGRIINISSIVGIAG-----------  149 (249)
T ss_dssp             SCCSEEEECCC-------------CHH-HHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCCCC--C-----------
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEEccHHhccC-----------
Confidence             6899999998654      2233444 899999999999988774    334 569999999876631           


Q ss_pred             CCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCccccc
Q 020104          151 FWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGF  227 (331)
Q Consensus       151 ~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (331)
                                 .++...|+.+|.+.+.+++.++.+   .++++++++||.+.++......    ........ .....  
T Consensus       150 -----------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~----~~~~~~~~-~~~~~--  211 (249)
T 3f9i_A          150 -----------NPGQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDKLN----EKQREAIV-QKIPL--  211 (249)
T ss_dssp             -----------CSCSHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC------CC----HHHHHHHH-HHCTT--
T ss_pred             -----------CCCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCccccCcccccC----HHHHHHHH-hcCCC--
Confidence                       122457999999999999988876   3799999999999887533211    11111111 11112  


Q ss_pred             CCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          228 LLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       228 ~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                         ..+.+++|+|+++++++..+.   .|..++++++
T Consensus       212 ---~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdgG  245 (249)
T 3f9i_A          212 ---GTYGIPEDVAYAVAFLASNNASYITGQTLHVNGG  245 (249)
T ss_dssp             ---CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             ---CCCcCHHHHHHHHHHHcCCccCCccCcEEEECCC
Confidence               378899999999999998653   2556777664

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=99.92  E-value=3.9e-24  Score=180.29  Aligned_cols=218  Identities=13%  Similarity=0.067  Sum_probs=156.9

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCe-EEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCC-ccHHH
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYS-VTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHP-DGFDA   78 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~   78 (331)
                      |...+|+|+||||+|+||++++++|+++|++ |++++|+..     . +.++.+.+... ..++.++.+|+.|. +++.+
T Consensus         1 m~l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~-----~-~~~~~l~~~~~-~~~~~~~~~D~~~~~~~~~~   73 (254)
T 1sby_A            1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVEN-----P-TALAELKAINP-KVNITFHTYDVTVPVAESKK   73 (254)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCC-----H-HHHHHHHHHCT-TSEEEEEECCTTSCHHHHHH
T ss_pred             CCCCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCch-----H-HHHHHHHHhCC-CceEEEEEEecCCChHHHHH
Confidence            6666789999999999999999999999997 999999861     1 22222222111 24688999999998 77777


Q ss_pred             Hhc-------CccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcC------CccEEEEecccceeecCCCCCC
Q 020104           79 AIA-------GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSG------TVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        79 ~~~-------~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~------~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                      +++       ++|+|||+||...  ..++. ..+++|+.++.++++++...-      ...++|++||...+..      
T Consensus        74 ~~~~~~~~~g~id~lv~~Ag~~~--~~~~~-~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------  144 (254)
T 1sby_A           74 LLKKIFDQLKTVDILINGAGILD--DHQIE-RTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNA------  144 (254)
T ss_dssp             HHHHHHHHHSCCCEEEECCCCCC--TTCHH-HHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSC------
T ss_pred             HHHHHHHhcCCCCEEEECCccCC--HHHHh-hhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhccC------
Confidence            664       7999999999753  33455 899999999999999886431      0258999999876631      


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccH---HHHHHHHh
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSV---RSSLALIL  219 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~---~~~~~~~~  219 (331)
                                      .++...|+.+|.+.+.+++.++.+   +++++++++||.+.++..... ....   ...... .
T Consensus       145 ----------------~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~-~~~~~~~~~~~~~-~  206 (254)
T 1sby_A          145 ----------------IHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTF-NSWLDVEPRVAEL-L  206 (254)
T ss_dssp             ----------------CTTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSC-CCGGGSCTTHHHH-H
T ss_pred             ----------------CCCchHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCccCcccccc-chhhhhhHHHHHH-H
Confidence                            122457999999999999988775   589999999999998742210 0000   000011 1


Q ss_pred             CCCcccccCCCccceeHHHHHHHHHHhhcCCCCCceEEEecc
Q 020104          220 GNREEYGFLLNTSMVHVDDVARAHIFLLEYPDAKGRYICSSH  261 (331)
Q Consensus       220 ~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~~~  261 (331)
                      .         ...+.+++|+|++++.++.....+..|+++++
T Consensus       207 ~---------~~~~~~~~dvA~~i~~~~~~~~~G~~~~v~gG  239 (254)
T 1sby_A          207 L---------SHPTQTSEQCGQNFVKAIEANKNGAIWKLDLG  239 (254)
T ss_dssp             T---------TSCCEEHHHHHHHHHHHHHHCCTTCEEEEETT
T ss_pred             h---------cCCCCCHHHHHHHHHHHHHcCCCCCEEEEeCC
Confidence            0         12456999999999999876555667777653

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=99.92  E-value=4.3e-24  Score=181.18  Aligned_cols=218  Identities=15%  Similarity=0.135  Sum_probs=155.6

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |...+|+||||||+|+||++++++|+++|++|++++|+.     ........  ++   ..++.++.+|+.|.+++.+++
T Consensus         8 ~~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~-----~~~~~~~~--~~---~~~~~~~~~D~~~~~~v~~~~   77 (265)
T 2o23_A            8 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPN-----SGGEAQAK--KL---GNNCVFAPADVTSEKDVQTAL   77 (265)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTT-----SSHHHHHH--HH---CTTEEEEECCTTCHHHHHHHH
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCc-----HhHHHHHH--Hh---CCceEEEEcCCCCHHHHHHHH
Confidence            344467899999999999999999999999999999987     23222111  11   146899999999999888887


Q ss_pred             c-------CccEEEEecccCCCC------------CCChhhHHHHHHHHHHHHHHHHHHhc----------CCccEEEEe
Q 020104           81 A-------GCTGVLHVATPVDFE------------DKEPEEVITQRAINGTLGILKSCLKS----------GTVKRVVYT  131 (331)
Q Consensus        81 ~-------~~d~Vih~a~~~~~~------------~~~~~~~~~~~n~~~~~~l~~~~~~~----------~~~~~~v~~  131 (331)
                      +       ++|+|||+|+.....            ..++ +..+++|+.++.++++++...          + ..++|++
T Consensus        78 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~-~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~-~~~iv~i  155 (265)
T 2o23_A           78 ALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDF-QRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQ-RGVIINT  155 (265)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHH-HHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSC-CEEEEEE
T ss_pred             HHHHHHCCCCCEEEECCccCCCCccccccccCCCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhcccccCCC-CcEEEEe
Confidence            6       799999999865421            1123 378899999999999988764          4 5799999


Q ss_pred             cccceeecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCC
Q 020104          132 SSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFA  208 (331)
Q Consensus       132 SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~  208 (331)
                      ||...+..                      .++...|+.+|.+.+.+++.++.+.   ++++++++||.+.++.... ..
T Consensus       156 sS~~~~~~----------------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-~~  212 (265)
T 2o23_A          156 ASVAAFEG----------------------QVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTS-LP  212 (265)
T ss_dssp             CCTHHHHC----------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC-------
T ss_pred             CChhhcCC----------------------CCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccccCccccc-cC
Confidence            99876631                      1224579999999999999888763   7999999999998874321 11


Q ss_pred             ccHHHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCCCCc-eEEEecc
Q 020104          209 GSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDAKG-RYICSSH  261 (331)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~-~~~~~~~  261 (331)
                      .   ......... ...    ...+++.+|+|+++++++..+...| .+++++.
T Consensus       213 ~---~~~~~~~~~-~~~----~~~~~~~~dva~~~~~l~~~~~~~G~~i~vdgG  258 (265)
T 2o23_A          213 E---KVCNFLASQ-VPF----PSRLGDPAEYAHLVQAIIENPFLNGEVIRLDGA  258 (265)
T ss_dssp             -------CHHHHT-CSS----SCSCBCHHHHHHHHHHHHHCTTCCSCEEEESTT
T ss_pred             H---HHHHHHHHc-CCC----cCCCCCHHHHHHHHHHHhhcCccCceEEEECCC
Confidence            0   000001101 111    0267899999999999997665444 5666553

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=99.92  E-value=1.5e-24  Score=183.51  Aligned_cols=220  Identities=16%  Similarity=0.141  Sum_probs=154.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHh--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAI--   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~--   80 (331)
                      .+|+||||||+|+||++++++|+++|++|++++|+.     +..+. ...+..   ...++.++.+|+.|++++.+++  
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~   79 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQ-----KELNDCLTQWRS---KGFKVEASVCDLSSRSERQELMNT   79 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHH---TTCEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHH
Confidence            457899999999999999999999999999999986     22221 111111   1246889999999998888877  


Q ss_pred             ------cCccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCC
Q 020104           81 ------AGCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        81 ------~~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                            .++|+|||+||.....      ..++ +..+++|+.++.++++++.    +.+ .+++|++||...+..     
T Consensus        80 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~-~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~-----  152 (260)
T 2ae2_A           80 VANHFHGKLNILVNNAGIVIYKEAKDYTVEDY-SLIMSINFEAAYHLSVLAHPFLKASE-RGNVVFISSVSGALA-----  152 (260)
T ss_dssp             HHHHTTTCCCEEEECCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHTS-SEEEEEECCGGGTSC-----
T ss_pred             HHHHcCCCCCEEEECCCCCCCCChhhCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcchhhccC-----
Confidence                  4699999999965321      1123 3788999999999999884    445 679999999776521     


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCc-cHHHHHHHHhC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAG-SVRSSLALILG  220 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~-~~~~~~~~~~~  220 (331)
                                       .++...|+.+|.+.+.+++.++.+.   ++++++++||.+.++........ ...........
T Consensus       153 -----------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~  215 (260)
T 2ae2_A          153 -----------------VPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLID  215 (260)
T ss_dssp             -----------------CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHH
T ss_pred             -----------------CCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCCCCCcchhhhccChhhHHHHHHHHh
Confidence                             1224579999999999999998775   79999999999987631110000 00000001111


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                       ....     ..+++++|+|+++++++..+.   .+..++++++
T Consensus       216 -~~~~-----~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG  253 (260)
T 2ae2_A          216 -RCAL-----RRMGEPKELAAMVAFLCFPAASYVTGQIIYVDGG  253 (260)
T ss_dssp             -TSTT-----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             -cCCC-----CCCCCHHHHHHHHHHHcCccccCCCCCEEEECCC
Confidence             1111     368899999999999987542   2446677654

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=99.92  E-value=5.6e-24  Score=181.99  Aligned_cols=229  Identities=15%  Similarity=0.150  Sum_probs=158.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCccc----CCcccccccc-CCCCCCCcEEEEeCCCCCCccHHH
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEH----RNSKDLSFLK-NLPGASERLRIFHADLSHPDGFDA   78 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~D~~~~~~~~~   78 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+......    ...+.+.... .......++.++.+|+.|.+++.+
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~   88 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALES   88 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH
Confidence            35789999999999999999999999999999997521000    0011111111 111123578899999999998888


Q ss_pred             Hhc-------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCC
Q 020104           79 AIA-------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYND  141 (331)
Q Consensus        79 ~~~-------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~  141 (331)
                      +++       ++|++||+||.....      .+++ +..+++|+.++.++++++.    +.+ ..++|++||...+..  
T Consensus        89 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~-~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~--  164 (281)
T 3s55_A           89 FVAEAEDTLGGIDIAITNAGISTIALLPEVESAQW-DEVIGTNLTGTFNTIAAVAPGMIKRN-YGRIVTVSSMLGHSA--  164 (281)
T ss_dssp             HHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGGSC--
T ss_pred             HHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEECChhhcCC--
Confidence            775       799999999965421      1123 3788899999999999863    345 579999999876531  


Q ss_pred             CCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCC-----C-----
Q 020104          142 KDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKF-----A-----  208 (331)
Q Consensus       142 ~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~-----~-----  208 (331)
                                          .++...|+.+|.+.+.+.+.++.+.   +++++.++||.++++......     .     
T Consensus       165 --------------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~  224 (281)
T 3s55_A          165 --------------------NFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEK  224 (281)
T ss_dssp             --------------------CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSTTTSSHHHHHC-------
T ss_pred             --------------------CCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccccchhhhccccccccc
Confidence                                1234589999999999999998864   899999999999998643210     0     


Q ss_pred             ccHHHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCCC---CceEEEecc
Q 020104          209 GSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDA---KGRYICSSH  261 (331)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~---~~~~~~~~~  261 (331)
                      ................     ...+++++|+|+++++++..+..   |..++++++
T Consensus       225 ~~~~~~~~~~~~~~~~-----~~~~~~p~dvA~~v~~L~s~~~~~itG~~i~vdgG  275 (281)
T 3s55_A          225 PTLKDVESVFASLHLQ-----YAPFLKPEEVTRAVLFLVDEASSHITGTVLPIDAG  275 (281)
T ss_dssp             CCHHHHHHHHHHHCSS-----SCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             cchhHHHHHHHhhhcc-----CcCCCCHHHHHHHHHHHcCCcccCCCCCEEEECCC
Confidence            0000000000000001     13789999999999999986542   556777654

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=99.92  E-value=3.5e-25  Score=185.73  Aligned_cols=216  Identities=15%  Similarity=0.189  Sum_probs=150.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEE-ecCCCCcccCCcccc-ccccCCCCCCCcEEE-EeCCCCCCccHHHHhc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTT-VRSELDPEHRNSKDL-SFLKNLPGASERLRI-FHADLSHPDGFDAAIA   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~D~~~~~~~~~~~~   81 (331)
                      ||+||||||+|+||++++++|+++|++|+++ +|+.     +..+.+ ..+..   ...++.. +.+|+.|.+++.++++
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~   72 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNR-----EKAEEVAEEARR---RGSPLVAVLGANLLEAEAATALVH   72 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCH-----HHHHHHHHHHHH---TTCSCEEEEECCTTSHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCH-----HHHHHHHHHHHh---cCCceEEEEeccCCCHHHHHHHHH
Confidence            4689999999999999999999999999998 7765     222211 11111   1134566 8999999988887754


Q ss_pred             -------CccEEEEecccCCC------CCCChhhHHHHHHHHHHHH----HHHHHHhcCCccEEEEecccceeecCCCCC
Q 020104           82 -------GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLG----ILKSCLKSGTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 -------~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~----l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                             ++|+|||+|+....      ...++ +..+++|+.++.+    +++.+++.+ .+++|++||...+...    
T Consensus        73 ~~~~~~~~~d~li~~Ag~~~~~~~~~~~~~~~-~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~~~----  146 (245)
T 2ph3_A           73 QAAEVLGGLDTLVNNAGITRDTLLVRMKDEDW-EAVLEANLSAVFRTTREAVKLMMKAR-FGRIVNITSVVGILGN----  146 (245)
T ss_dssp             HHHHHHTCCCEEEECCCCCCCBCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCTHHHHCC----
T ss_pred             HHHHhcCCCCEEEECCCCCCCCCcccCCHHHH-HHHHhhccHHHHHHHHHHHHHHHhcC-CCEEEEEeChhhccCC----
Confidence                   79999999986542      11122 3788999999544    455555666 6899999997655311    


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                                        ++...|+.+|.+.+.+++.++.+.   +++++++||+.++++.... ..   ..........
T Consensus       147 ------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-~~---~~~~~~~~~~  204 (245)
T 2ph3_A          147 ------------------PGQANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETEMTER-LP---QEVKEAYLKQ  204 (245)
T ss_dssp             ------------------SSBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT-SC---HHHHHHHHHT
T ss_pred             ------------------CCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEEEeecCcchhh-cC---HHHHHHHHhc
Confidence                              124579999999999999888765   8999999999998874321 11   1111111111


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEeccc
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSHT  262 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~~  262 (331)
                       ...     ..+++++|+|+++++++..+.   .+..|+++++.
T Consensus       205 -~~~-----~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~  242 (245)
T 2ph3_A          205 -IPA-----GRFGRPEEVAEAVAFLVSEKAGYITGQTLCVDGGL  242 (245)
T ss_dssp             -CTT-----CSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTC
T ss_pred             -CCC-----CCCcCHHHHHHHHHHHhCcccccccCCEEEECCCC
Confidence             111     368899999999999997643   25567777653

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=99.92  E-value=9.7e-24  Score=177.35  Aligned_cols=218  Identities=14%  Similarity=0.102  Sum_probs=146.7

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |..++|++|||||+|+||++++++|+++|++|++++|+..     .       .+     .++.++.+|+.|.+++.+++
T Consensus         3 m~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~-----~-------~~-----~~~~~~~~D~~d~~~~~~~~   65 (250)
T 2fwm_X            3 MDFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFT-----Q-------EQ-----YPFATEVMDVADAAQVAQVC   65 (250)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCC-----S-------SC-----CSSEEEECCTTCHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchh-----h-------hc-----CCceEEEcCCCCHHHHHHHH
Confidence            5555689999999999999999999999999999999872     1       01     12688899999999888887


Q ss_pred             c-------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCC
Q 020104           81 A-------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        81 ~-------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~  143 (331)
                      +       ++|+|||+|+.....      ..++ +..+++|+.++.++++++    ++.+ ..++|++||...+..    
T Consensus        66 ~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~-~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~~~----  139 (250)
T 2fwm_X           66 QRLLAETERLDALVNAAGILRMGATDQLSKEDW-QQTFAVNVGGAFNLFQQTMNQFRRQR-GGAIVTVASDAAHTP----  139 (250)
T ss_dssp             HHHHHHCSCCCEEEECCCCCCCCCTTTSCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTSC----
T ss_pred             HHHHHHcCCCCEEEECCCcCCCCCcccCCHHHH-HHHHHHccHHHHHHHHHHHHHHHhcC-CCEEEEECchhhCCC----
Confidence            5       689999999865421      1223 378999999999999888    4455 679999999876521    


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHH-HHh
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLA-LIL  219 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~-~~~  219 (331)
                                        .++...|+.+|.+.+.+++.++.+.   ++++++++||.++++........  ..... ...
T Consensus       140 ------------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~--~~~~~~~~~  199 (250)
T 2fwm_X          140 ------------------RIGMSAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQRTLWVS--DDAEEQRIR  199 (250)
T ss_dssp             ------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------------------
T ss_pred             ------------------CCCCchHHHHHHHHHHHHHHHHHHhCccCCEEEEEECCcccCccccccccC--hhHHHHHHh
Confidence                              1234589999999999999988764   89999999999998853221000  00000 000


Q ss_pred             CCCcccc-cCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          220 GNREEYG-FLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       220 ~~~~~~~-~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      .....+. ......+.+.+|+|+++++++..+.   .+..+++++.
T Consensus       200 ~~~~~~~~~~p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG  245 (250)
T 2fwm_X          200 GFGEQFKLGIPLGKIARPQEIANTILFLASDLASHITLQDIVVDGG  245 (250)
T ss_dssp             ----------------CHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             hhhhcccccCCCCCCcCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence            0000000 0001257899999999999997643   2445667654

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=99.92  E-value=3.6e-24  Score=179.77  Aligned_cols=219  Identities=14%  Similarity=0.127  Sum_probs=159.7

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccc-cccCCCCCCCcEEEEeCCCCCCccHHHH
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLS-FLKNLPGASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      |+..+|++|||||+|+||++++++|+++|++|++++|+.     ...+.+. .+.+   ...++.++.+|+.|.+++.++
T Consensus         1 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~   72 (247)
T 3lyl_A            1 MSLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQ-----ASAEKFENSMKE---KGFKARGLVLNISDIESIQNF   72 (247)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSH-----HHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHH
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHh---cCCceEEEEecCCCHHHHHHH
Confidence            666778999999999999999999999999999999987     2222221 1111   125789999999999988887


Q ss_pred             hc-------CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCC
Q 020104           80 IA-------GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDK  142 (331)
Q Consensus        80 ~~-------~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~  142 (331)
                      ++       ++|+|||+|+....      ...++ +..+++|+.++.++++++..    .+ ..++|++||...+..   
T Consensus        73 ~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~---  147 (247)
T 3lyl_A           73 FAEIKAENLAIDILVNNAGITRDNLMMRMSEDEW-QSVINTNLSSIFRMSKECVRGMMKKR-WGRIISIGSVVGSAG---  147 (247)
T ss_dssp             HHHHHHTTCCCSEEEECCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCTHHHHC---
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHHcC-CeEEEEEcchhhccC---
Confidence            64       58999999997542      11223 37899999999999887654    34 469999999776531   


Q ss_pred             CCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHh
Q 020104          143 DVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALIL  219 (331)
Q Consensus       143 ~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~  219 (331)
                                         .++...|+.+|.+.+.+++.++.+.   +++++.++||.+.++..... .   ........
T Consensus       148 -------------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-~---~~~~~~~~  204 (247)
T 3lyl_A          148 -------------------NPGQTNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIATDMTDKL-T---DEQKSFIA  204 (247)
T ss_dssp             -------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTTS-C---HHHHHHHH
T ss_pred             -------------------CCCcHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCcEecccchhc-c---HHHHHHHh
Confidence                               1224589999999999999888763   79999999999988754321 1   11111111


Q ss_pred             CCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          220 GNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       220 ~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                       .....     ..+.+++|+|+++++++..+.   .|..++++++
T Consensus       205 -~~~~~-----~~~~~~~dva~~i~~l~s~~~~~~tG~~i~vdgG  243 (247)
T 3lyl_A          205 -TKIPS-----GQIGEPKDIAAAVAFLASEEAKYITGQTLHVNGG  243 (247)
T ss_dssp             -TTSTT-----CCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             -hcCCC-----CCCcCHHHHHHHHHHHhCCCcCCccCCEEEECCC
Confidence             11122     378899999999999997543   2456777654

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=99.92  E-value=5e-24  Score=185.35  Aligned_cols=238  Identities=15%  Similarity=0.145  Sum_probs=154.1

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCC-CCCCCcEEEEeCCCCCCccHHHH
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNL-PGASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      |...+|++|||||+|+||++++++|+++|++|++++|+...   ...+.++.+.+. .....++.++.+|+.|.+++.++
T Consensus         1 M~m~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~---r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~   77 (324)
T 3u9l_A            1 MVMSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVG---RNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRA   77 (324)
T ss_dssp             ----CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTT---TTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHH
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccc---cCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHH
Confidence            66566889999999999999999999999999999997521   111222222111 11125689999999999998888


Q ss_pred             hc-------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCC
Q 020104           80 IA-------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDK  142 (331)
Q Consensus        80 ~~-------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~  142 (331)
                      ++       ++|+|||+||.....      .+++ +..+++|+.++.++++++    ++.+ ..++|++||...+...  
T Consensus        78 ~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~a~lp~m~~~~-~g~iV~isS~~~~~~~--  153 (324)
T 3u9l_A           78 IDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQF-AELYDINVLSTQRVNRAALPHMRRQK-HGLLIWISSSSSAGGT--  153 (324)
T ss_dssp             HHHHHHHHSCCSEEEECCCCCBCSCGGGSCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSCC--
T ss_pred             HHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEecchhccCC--
Confidence            76       799999999964321      1222 378899999999999988    5556 6799999998765311  


Q ss_pred             CCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCC---CCCccHHHHHH
Q 020104          143 DVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICP---KFAGSVRSSLA  216 (331)
Q Consensus       143 ~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~---~~~~~~~~~~~  216 (331)
                                         .+....|+.+|.+.+.+++.++.+   +++++++++||.+.++....   ..+........
T Consensus       154 -------------------~~~~~~Y~asKaa~~~~~~~la~el~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~  214 (324)
T 3u9l_A          154 -------------------PPYLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGTNHFAHSGVPDDHARQAE  214 (324)
T ss_dssp             -------------------CSSCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCC---------CBCCSCHHHHHH
T ss_pred             -------------------CCcchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEECCccccCchhhcccCCchHHHHHHh
Confidence                               112457999999999999998877   48999999999998654221   11111111111


Q ss_pred             HHhCCCccccc-------CCCccceeHHHHHHHHHHhhcCCCC--CceEEEeccccC
Q 020104          217 LILGNREEYGF-------LLNTSMVHVDDVARAHIFLLEYPDA--KGRYICSSHTLT  264 (331)
Q Consensus       217 ~~~~~~~~~~~-------~~~~~~i~v~D~a~~~~~~~~~~~~--~~~~~~~~~~~s  264 (331)
                      ...........       ....+..+++|+|++++.++..+..  ...+.+++....
T Consensus       215 ~~~~~~~~~~~~~~~~~~~l~~~~~~p~~vA~aiv~~~~~~~~~~~~~~~~gp~~~~  271 (324)
T 3u9l_A          215 YEAGPNAGLGEEIKKAFAAIVPPDADVSLVADAIVRVVGTASGKRPFRVHVDPAEDG  271 (324)
T ss_dssp             HHHTTTTTHHHHHHHHHHHTSCTTCCTHHHHHHHHHHHTSCTTCCCSEEEECTTCCS
T ss_pred             hccccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeCCcchH
Confidence            11100000000       0001236889999999999987743  224456554444

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=99.92  E-value=3.2e-24  Score=179.99  Aligned_cols=214  Identities=17%  Similarity=0.159  Sum_probs=155.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+.     ...+.....  +   ......+.+|+.|.+++.++++  
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~-----~~~~~~~~~--~---~~~~~~~~~Dv~d~~~v~~~~~~~   77 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGAKVIGTATSE-----SGAQAISDY--L---GDNGKGMALNVTNPESIEAVLKAI   77 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSH-----HHHHHHHHH--H---GGGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHH--h---cccceEEEEeCCCHHHHHHHHHHH
Confidence            347899999999999999999999999999999987     222222111  1   1357889999999998888775  


Q ss_pred             -----CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCCc
Q 020104           82 -----GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                           ++|++||+||....      ..+++ +..+++|+.++.++++++..    .+ ..++|++||...+..       
T Consensus        78 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~-~~~~~vN~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~~~-------  148 (248)
T 3op4_A           78 TDEFGGVDILVNNAGITRDNLLMRMKEEEW-SDIMETNLTSIFRLSKAVLRGMMKKR-QGRIINVGSVVGTMG-------  148 (248)
T ss_dssp             HHHHCCCSEEEECCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHHC-------
T ss_pred             HHHcCCCCEEEECCCCCCCCChhhCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEcchhhcCC-------
Confidence                 79999999996542      12223 37899999999999988754    44 579999999776531       


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE  223 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  223 (331)
                                     .++...|+.+|.+.+.+.+.++.+.   +++++.++||.+..+.......   .........  .
T Consensus       149 ---------------~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~---~~~~~~~~~--~  208 (248)
T 3op4_A          149 ---------------NAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKALND---EQRTATLAQ--V  208 (248)
T ss_dssp             ---------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSTTTTTSCH---HHHHHHHHT--C
T ss_pred             ---------------CCCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEeeCCCCCchhhhcCH---HHHHHHHhc--C
Confidence                           1235689999999999999888764   7999999999998875332111   111111111  1


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCCCC---CceEEEecc
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYPDA---KGRYICSSH  261 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~~---~~~~~~~~~  261 (331)
                      ..     ..+.+++|+|+++++++.....   |..++++++
T Consensus       209 p~-----~r~~~p~dva~~v~~L~s~~~~~itG~~i~vdgG  244 (248)
T 3op4_A          209 PA-----GRLGDPREIASAVAFLASPEAAYITGETLHVNGG  244 (248)
T ss_dssp             TT-----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             CC-----CCCcCHHHHHHHHHHHcCCccCCccCcEEEECCC
Confidence            11     2688999999999999975432   456677654

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=99.92  E-value=9.2e-24  Score=178.90  Aligned_cols=206  Identities=19%  Similarity=0.208  Sum_probs=150.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      ++|++|||||+|+||+++++.|+++|++|++++|+.     +   .++.+.     ..++.++.+|+.|.+++.++++  
T Consensus        15 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~-----~---~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~   81 (266)
T 3p19_A           15 MKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRV-----E---RLKALN-----LPNTLCAQVDVTDKYTFDTAITRA   81 (266)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCH-----H---HHHTTC-----CTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH-----H---HHHHhh-----cCCceEEEecCCCHHHHHHHHHHH
Confidence            457899999999999999999999999999999986     2   222111     1468899999999998888775  


Q ss_pred             -----CccEEEEecccCCCC---CCC--hhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCcc
Q 020104           82 -----GCTGVLHVATPVDFE---DKE--PEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~---~~~--~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                           ++|++||+||.....   ..+  ..+..+++|+.++.++++++.    +.+ ..++|++||...+..        
T Consensus        82 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-~g~IV~isS~~~~~~--------  152 (266)
T 3p19_A           82 EKIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARN-CGTIINISSIAGKKT--------  152 (266)
T ss_dssp             HHHHCSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTSC--------
T ss_pred             HHHCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEcChhhCCC--------
Confidence                 789999999965421   111  123678999999999777654    455 679999999876531        


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcc
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREE  224 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~  224 (331)
                                    .++...|+.+|.+.+.+.+.++.+   ++++++.++||.+.++...............   .....
T Consensus       153 --------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~---~~~~~  215 (266)
T 3p19_A          153 --------------FPDHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLSHTTSQQIKDGYD---AWRVD  215 (266)
T ss_dssp             --------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCSCHHHHHHHH---HHHHH
T ss_pred             --------------CCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCccccchhhcccchhhhHHHH---hhccc
Confidence                          122457999999999999998877   4899999999999987533221111111111   00011


Q ss_pred             cccCCCccceeHHHHHHHHHHhhcCCCCC
Q 020104          225 YGFLLNTSMVHVDDVARAHIFLLEYPDAK  253 (331)
Q Consensus       225 ~~~~~~~~~i~v~D~a~~~~~~~~~~~~~  253 (331)
                      .     ..+++++|+|+++++++.++...
T Consensus       216 ~-----~r~~~pedvA~av~~l~~~~~~~  239 (266)
T 3p19_A          216 M-----GGVLAADDVARAVLFAYQQPQNV  239 (266)
T ss_dssp             T-----TCCBCHHHHHHHHHHHHHSCTTE
T ss_pred             c-----cCCCCHHHHHHHHHHHHcCCCCc
Confidence            1     26889999999999999987653

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=99.92  E-value=4.7e-24  Score=180.71  Aligned_cols=218  Identities=17%  Similarity=0.093  Sum_probs=153.4

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      +|++|||||+|+||++++++|+++|++|++++|+.     ...+...  .++.   .++.++.+|+.|.+++.++++   
T Consensus        12 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~--~~~~---~~~~~~~~D~~d~~~v~~~~~~~~   81 (263)
T 3ak4_A           12 GRKAIVTGGSKGIGAAIARALDKAGATVAIADLDV-----MAAQAVV--AGLE---NGGFAVEVDVTKRASVDAAMQKAI   81 (263)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHH--HTCT---TCCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHH--HHHh---cCCeEEEEeCCCHHHHHHHHHHHH
Confidence            47899999999999999999999999999999986     2222111  1111   257889999999998888876   


Q ss_pred             ----CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCCCCCCcc
Q 020104           82 ----GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 ----~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                          ++|+|||+||.....      ..++ +..+++|+.++.++++++...    +...++|++||...+..        
T Consensus        82 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~-~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~--------  152 (263)
T 3ak4_A           82 DALGGFDLLCANAGVSTMRPAVDITDEEW-DFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKVG--------  152 (263)
T ss_dssp             HHHTCCCEEEECCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSC--------
T ss_pred             HHcCCCCEEEECCCcCCCCChhhCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecccccccC--------
Confidence                799999999865421      1123 378899999999998887653    21379999999776521        


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCC----c---cHHHHHHH
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFA----G---SVRSSLAL  217 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~----~---~~~~~~~~  217 (331)
                                    .++...|+.+|.+.+.+++.++.+.   +++++++|||.++++.......    .   ........
T Consensus       153 --------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~  218 (263)
T 3ak4_A          153 --------------APLLAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAMQEREIIWEAELRGMTPEAVRAE  218 (263)
T ss_dssp             --------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBTTHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             --------------CCCchhHHHHHHHHHHHHHHHHHHHhHcCeEEEEEecccccChhhhhhccccccccccCcHHHHHH
Confidence                          1224579999999999999988764   8999999999998874211000    0   00000111


Q ss_pred             HhCCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          218 ILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       218 ~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ... ....     ..+++++|+|+++++++..+.   .+..+++++.
T Consensus       219 ~~~-~~p~-----~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG  259 (263)
T 3ak4_A          219 YVS-LTPL-----GRIEEPEDVADVVVFLASDAARFMTGQGINVTGG  259 (263)
T ss_dssp             HHH-TCTT-----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred             HHh-cCCC-----CCCcCHHHHHHHHHHHhCccccCCCCCEEEECcC
Confidence            111 0111     368999999999999997642   3456777654

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.92  E-value=9.4e-24  Score=177.46  Aligned_cols=210  Identities=15%  Similarity=0.165  Sum_probs=148.2

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      +|+||||||+|+||++++++|+++|  ++|++++|+.     ...+.+.   +.  ...++.++.+|+.|.+++.++++ 
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~-----~~~~~l~---~~--~~~~~~~~~~D~~~~~~~~~~~~~   72 (250)
T 1yo6_A            3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDV-----EKATELK---SI--KDSRVHVLPLTVTCDKSLDTFVSK   72 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSG-----GGCHHHH---TC--CCTTEEEEECCTTCHHHHHHHHHH
T ss_pred             CCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCH-----HHHHHHH---hc--cCCceEEEEeecCCHHHHHHHHHH
Confidence            5789999999999999999999999  9999999987     3333222   22  13578999999999998888776 


Q ss_pred             --------CccEEEEecccCC-CC---CC--ChhhHHHHHHHHHHHHHHHHHHhc----------CC----ccEEEEecc
Q 020104           82 --------GCTGVLHVATPVD-FE---DK--EPEEVITQRAINGTLGILKSCLKS----------GT----VKRVVYTSS  133 (331)
Q Consensus        82 --------~~d~Vih~a~~~~-~~---~~--~~~~~~~~~n~~~~~~l~~~~~~~----------~~----~~~~v~~SS  133 (331)
                              ++|+|||+|+... ..   ..  +..+..+++|+.++.++++++...          +.    ..++|++||
T Consensus        73 ~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS  152 (250)
T 1yo6_A           73 VGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISS  152 (250)
T ss_dssp             HHHHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECC
T ss_pred             HHHhcCCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEecc
Confidence                    7999999998654 11   11  112378899999999998887643          10    369999999


Q ss_pred             cceeecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCcc
Q 020104          134 NAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGS  210 (331)
Q Consensus       134 ~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~  210 (331)
                      ...+.....      +.+         ...+...|+.+|.+.+.+++.++.++   ++++++++||.+.++....     
T Consensus       153 ~~~~~~~~~------~~~---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-----  212 (250)
T 1yo6_A          153 GLGSITDNT------SGS---------AQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGK-----  212 (250)
T ss_dssp             GGGCSTTCC------STT---------SSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC------------
T ss_pred             CccccCCcc------ccc---------ccCCccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcCCceecCCCCC-----
Confidence            876532110      011         12345689999999999999988875   8999999999998763210     


Q ss_pred             HHHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC--CCceEE-EeccccC
Q 020104          211 VRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKGRYI-CSSHTLT  264 (331)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~-~~~~~~s  264 (331)
                                          ..+++.+|+|++++.++..+.  ..|.|. +.++.++
T Consensus       213 --------------------~~~~~~~~~a~~~~~~~~~~~~~~~G~~~~~~g~~~~  249 (250)
T 1yo6_A          213 --------------------NAALTVEQSTAELISSFNKLDNSHNGRFFMRNLKPYE  249 (250)
T ss_dssp             --------------------------HHHHHHHHHHHTTCCGGGTTCEEETTEEECC
T ss_pred             --------------------CCCCCHHHHHHHHHHHHhcccccCCCeEEEECCcCCC
Confidence                                146789999999999998754  345554 4444443

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=99.92  E-value=2.5e-24  Score=181.22  Aligned_cols=217  Identities=15%  Similarity=0.181  Sum_probs=151.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|+||||||+|+||++++++|+++|++|++++|+.     ...+.. +.+..    ..++.++.+|+.|.+++.++++ 
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~   75 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHS-----DVGEKAAKSVGT----PDQIQFFQHDSSDEDGWTKLFDA   75 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHCC----TTTEEEEECCTTCHHHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHhhc----cCceEEEECCCCCHHHHHHHHHH
Confidence            457899999999999999999999999999999986     222211 11111    1478999999999998888775 


Q ss_pred             ------CccEEEEecccCCCC---CCC--hhhHHHHHHHHHHHHHHHHH----HhcCCc-cEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDFE---DKE--PEEVITQRAINGTLGILKSC----LKSGTV-KRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~---~~~--~~~~~~~~n~~~~~~l~~~~----~~~~~~-~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|+|||+|+.....   ..+  ..+..+++|+.++.++.+++    ++.+ . +++|++||...+..      
T Consensus        76 ~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~~~~iv~isS~~~~~~------  148 (251)
T 1zk4_A           76 TEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKG-LGASIINMSSIEGFVG------  148 (251)
T ss_dssp             HHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSS-SCEEEEEECCGGGTSC------
T ss_pred             HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcC-CCCEEEEeCCchhccC------
Confidence                  489999999865321   111  12378899999777666554    4455 5 79999999876631      


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHH-----HcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAE-----EHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILG  220 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~-----~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~  220 (331)
                                      .++...|+.+|.+.+.+++.++.     ..+++++++|||.++++.... ...   ........
T Consensus       149 ----------------~~~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~~~~-~~~---~~~~~~~~  208 (251)
T 1zk4_A          149 ----------------DPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDD-LPG---AEEAMSQR  208 (251)
T ss_dssp             ----------------CTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHT-STT---HHHHHTST
T ss_pred             ----------------CCCCccchHHHHHHHHHHHHHHHHhcccCCCeEEEEEeeCcCcchhhhh-cCc---hhhhHHHh
Confidence                            12245899999999999988775     347999999999999874321 110   00110011


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      .....     ..+++.+|+|+++++++..+.   .+..++++++
T Consensus       209 ~~~~~-----~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG  247 (251)
T 1zk4_A          209 TKTPM-----GHIGEPNDIAYICVYLASNESKFATGSEFVVDGG  247 (251)
T ss_dssp             TTCTT-----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             hcCCC-----CCCcCHHHHHHHHHHHcCcccccccCcEEEECCC
Confidence            11111     368999999999999997643   2456777654

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=99.92  E-value=4.1e-24  Score=180.74  Aligned_cols=223  Identities=13%  Similarity=0.089  Sum_probs=152.6

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      ..+|++|||||+|+||++++++|+++|++|++++|+.     +..+.. +.+.... ...++.++.+|+.|++++.++++
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~   78 (260)
T 2z1n_A            5 IQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNR-----EKLEAAASRIASLV-SGAQVDIVAGDIREPGDIDRLFE   78 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHHHS-TTCCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHhcC-CCCeEEEEEccCCCHHHHHHHHH
Confidence            3457899999999999999999999999999999986     222211 1111000 01268899999999999888876


Q ss_pred             ------CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|+|||+|+....      ...++ +..+++|+.++.++++++    ++.+ .+++|++||...+..      
T Consensus        79 ~~~~~~gid~lv~~Ag~~~~~~~~~~~~~~~-~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~------  150 (260)
T 2z1n_A           79 KARDLGGADILVYSTGGPRPGRFMELGVEDW-DESYRLLARSAVWVGRRAAEQMVEKG-WGRMVYIGSVTLLRP------  150 (260)
T ss_dssp             HHHHTTCCSEEEECCCCCCCBCGGGCCHHHH-HHHHHHTHHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSC------
T ss_pred             HHHHhcCCCEEEECCCCCCCCCcccCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECchhhcCC------
Confidence                  69999999986432      11123 378899999996666655    3555 689999999876631      


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCc-----cHH-HH-H
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAG-----SVR-SS-L  215 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~-----~~~-~~-~  215 (331)
                                      .++...|+.+|...+.+.+.++.+.   ++++++++||.++++........     ... .. .
T Consensus       151 ----------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~  214 (260)
T 2z1n_A          151 ----------------WQDLALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILTDRVRSLAEERARRSGITVEEAL  214 (260)
T ss_dssp             ----------------CTTBHHHHHHTHHHHHHHHHHHHHHGGGTEEEEEEEECHHHHCCCC------------------
T ss_pred             ----------------CCCCchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEEECCcccchhhhhhhhhhcccCCcHHHHH
Confidence                            1224579999999999999988765   89999999999998854310000     000 00 0


Q ss_pred             HHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          216 ALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      .... .....     ..+.+.+|+|+++++++..+.   .+..++++++
T Consensus       215 ~~~~-~~~p~-----~r~~~~~dva~~v~~l~s~~~~~~tG~~i~vdGG  257 (260)
T 2z1n_A          215 KSMA-SRIPM-----GRVGKPEELASVVAFLASEKASFITGAVIPVDGG  257 (260)
T ss_dssp             ------CCTT-----SSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred             HHHH-hcCCC-----CCccCHHHHHHHHHHHhCccccCCCCCEEEeCCC
Confidence            0000 00111     367899999999999997543   2445667654

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=99.92  E-value=7.6e-24  Score=181.72  Aligned_cols=218  Identities=19%  Similarity=0.152  Sum_probs=156.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|+||||||+|+||++++++|+++|++|++++|+.     +..+.. ..+.+.  ...++.++.+|+.|.+++.++++ 
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~-----~~~~~~~~~l~~~--~~~~~~~~~~Dv~d~~~v~~~~~~  112 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGANVAVAARSP-----RELSSVTAELGEL--GAGNVIGVRLDVSDPGSCADAART  112 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSG-----GGGHHHHHHHTTS--SSSCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHHhh--CCCcEEEEEEeCCCHHHHHHHHHH
Confidence            457899999999999999999999999999999987     232222 222221  11478999999999988877764 


Q ss_pred             ------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|++||+||.....      .+++ +..+++|+.++.++++++.    +.+ ..++|++||......+     
T Consensus       113 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iV~isS~~~~~~~-----  185 (293)
T 3rih_A          113 VVDAFGALDVVCANAGIFPEARLDTMTPEQL-SEVLDVNVKGTVYTVQACLAPLTASG-RGRVILTSSITGPVTG-----  185 (293)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCTTTCCHHHH-HHHHHHHTHHHHHHHHHTHHHHHHHS-SCEEEEECCSBTTTBB-----
T ss_pred             HHHHcCCCCEEEECCCCCCCCCcccCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEeChhhccCC-----
Confidence                  689999999965421      1123 3789999999999999883    555 5799999997643111     


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                      .++...|+.+|.+.+.+++.++.+   ++++++.++||.++++......    ......... .
T Consensus       186 ----------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~----~~~~~~~~~-~  244 (293)
T 3rih_A          186 ----------------YPGWSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEGLVDMG----EEYISGMAR-S  244 (293)
T ss_dssp             ----------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHTC----HHHHHHHHT-T
T ss_pred             ----------------CCCCHHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCCcCcchhhcc----HHHHHHHHh-c
Confidence                            122458999999999999998877   4899999999999987422111    111111111 1


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ..+     ..+...+|+++++++++....   .|..++++++
T Consensus       245 ~p~-----~r~~~p~dvA~~v~fL~s~~a~~itG~~i~vdGG  281 (293)
T 3rih_A          245 IPM-----GMLGSPVDIGHLAAFLATDEAGYITGQAIVVDGG  281 (293)
T ss_dssp             STT-----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             CCC-----CCCCCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence            122     257789999999999997543   2456777654

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=99.92  E-value=2.9e-24  Score=183.04  Aligned_cols=221  Identities=15%  Similarity=0.133  Sum_probs=155.4

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |...+|++|||||+|+||++++++|+++|++|++++|+.     +.......  +.   ..++.++.+|+.|.+++.+++
T Consensus        23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~-----~~~~~~~~--~~---~~~~~~~~~Dv~d~~~v~~~~   92 (277)
T 4dqx_A           23 MDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNE-----DAAVRVAN--EI---GSKAFGVRVDVSSAKDAESMV   92 (277)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH-----HHHHHHHH--HH---CTTEEEEECCTTCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHH--Hh---CCceEEEEecCCCHHHHHHHH
Confidence            334567899999999999999999999999999999987     22222111  11   246889999999999888877


Q ss_pred             c-------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCC
Q 020104           81 A-------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        81 ~-------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~  143 (331)
                      +       ++|++||+||.....      .+++ +..+++|+.++.++++++.    +.+ ..++|++||...+..    
T Consensus        93 ~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~-~~~~~vN~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~----  166 (277)
T 4dqx_A           93 EKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETW-DRIMSVNVKGIFLCSKYVIPVMRRNG-GGSIINTTSYTATSA----  166 (277)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHH-HHHHHHHTHHHHHHHHHHHHHHTTTT-CEEEEEECCGGGTSC----
T ss_pred             HHHHHHcCCCCEEEECCCcCCCCCcccCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEECchhhCcC----
Confidence            5       689999999964321      1122 3678899999998888774    334 469999999876531    


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCC--CCccHHHHHHHH
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPK--FAGSVRSSLALI  218 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~--~~~~~~~~~~~~  218 (331)
                                        .++...|+.+|.+.+.+++.++.+.   +++++.++||.+.++.....  ............
T Consensus       167 ------------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~  228 (277)
T 4dqx_A          167 ------------------IADRTAYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPYFTKIFAEAKDPAKLRSDF  228 (277)
T ss_dssp             ------------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHHTCSCHHHHHHHH
T ss_pred             ------------------CCCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCchhhhhcccccchhHHHHHH
Confidence                              1235589999999999999988775   79999999999987631000  000000111111


Q ss_pred             hCCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          219 LGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       219 ~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      . .....     ..+.+++|+|+++++++....   .|..++++++
T Consensus       229 ~-~~~~~-----~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG  268 (277)
T 4dqx_A          229 N-ARAVM-----DRMGTAEEIAEAMLFLASDRSRFATGSILTVDGG  268 (277)
T ss_dssp             H-TTSTT-----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred             H-hcCcc-----cCCcCHHHHHHHHHHHhCCccCCCcCCEEEECCc
Confidence            1 11112     367899999999999997653   3556777654

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=99.91  E-value=4.6e-24  Score=182.25  Aligned_cols=236  Identities=16%  Similarity=0.125  Sum_probs=158.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcc----cCCcccccccc-CCCCCCCcEEEEeCCCCCCccHHH
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPE----HRNSKDLSFLK-NLPGASERLRIFHADLSHPDGFDA   78 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~D~~~~~~~~~   78 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+.....    ....+.+.... .+.....++.++.+|+.|.+++.+
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~   91 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESLSA   91 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH
Confidence            3578999999999999999999999999999998741000    00111111111 111112578999999999998888


Q ss_pred             Hhc-------CccEEEEecccCCCCC--CChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCCCCCC
Q 020104           79 AIA-------GCTGVLHVATPVDFED--KEPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        79 ~~~-------~~d~Vih~a~~~~~~~--~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                      +++       ++|++||+||......  +++ +..+++|+.++.++++++...    +...++|++||...+.....   
T Consensus        92 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~---  167 (278)
T 3sx2_A           92 ALQAGLDELGRLDIVVANAGIAPMSAGDDGW-HDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVGS---  167 (278)
T ss_dssp             HHHHHHHHHCCCCEEEECCCCCCCSSTHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCCC---
T ss_pred             HHHHHHHHcCCCCEEEECCCCCCCCCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcCCCcc---
Confidence            775       7999999999755322  233 488999999999999987542    21369999999876531100   


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHH-HHH-hC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSL-ALI-LG  220 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~-~~  220 (331)
                          .           .++...|+.+|.+.+.+++.++.+.   +++++.++||.+.++.....   ...... ... ..
T Consensus       168 ----~-----------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~---~~~~~~~~~~~~~  229 (278)
T 3sx2_A          168 ----A-----------DPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMINNE---FTREWLAKMAAAT  229 (278)
T ss_dssp             ----S-----------SHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSH---HHHHHHHHHHHHC
T ss_pred             ----C-----------CCCchHhHHHHHHHHHHHHHHHHHHhccCcEEEEEecCCccCccchhh---hHHHHHhhccchh
Confidence                0           1224579999999999999988765   69999999999998864321   111111 111 11


Q ss_pred             C-CcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          221 N-REEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       221 ~-~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      . ...+.......+++.+|+|+++++++....   .|..+++++.
T Consensus       230 ~~~~~~~~~~p~~~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG  274 (278)
T 3sx2_A          230 DTPGAMGNAMPVEVLAPEDVANAVAWLVSDQARYITGVTLPVDAG  274 (278)
T ss_dssp             C--CTTSCSSSCSSBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred             hhhhhhhhhcCcCcCCHHHHHHHHHHHhCcccccccCCEEeECCC
Confidence            1 111111111478999999999999997543   2456777654

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=99.91  E-value=2.4e-23  Score=175.51  Aligned_cols=216  Identities=13%  Similarity=0.102  Sum_probs=154.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+.     . ......+..   ...++.++.+|+.|.+++.++++  
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~-----~-~~~~~~l~~---~~~~~~~~~~D~~~~~~v~~~~~~~   73 (255)
T 2q2v_A            3 KGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGD-----P-APALAEIAR---HGVKAVHHPADLSDVAQIEALFALA   73 (255)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSC-----C-HHHHHHHHT---TSCCEEEECCCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc-----h-HHHHHHHHh---cCCceEEEeCCCCCHHHHHHHHHHH
Confidence            357899999999999999999999999999999987     2 222222222   12468889999999999988876  


Q ss_pred             -----CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCCCCc
Q 020104           82 -----GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                           ++|+|||+||.....      ..++ +..+++|+.++.++.+++    ++.+ ..++|++||...+..       
T Consensus        74 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~-~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~-------  144 (255)
T 2q2v_A           74 EREFGGVDILVNNAGIQHVAPVEQFPLESW-DKIIALNLSAVFHGTRLALPGMRARN-WGRIINIASVHGLVG-------  144 (255)
T ss_dssp             HHHHSSCSEEEECCCCCCCBCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCGGGTSC-------
T ss_pred             HHHcCCCCEEEECCCCCCCCChhhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEcCchhccC-------
Confidence                 799999999865321      1123 378899999776666554    5555 689999999876531       


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccH---HHH---H--
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSV---RSS---L--  215 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~---~~~---~--  215 (331)
                                     .++...|+.+|...+.+.+.++.+.   ++++++++||.++++....    ..   ...   .  
T Consensus       145 ---------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----~~~~~~~~~~~~~~  205 (255)
T 2q2v_A          145 ---------------STGKAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQK----QIDDRAANGGDPLQ  205 (255)
T ss_dssp             ---------------CTTBHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSBCCHHHHH----HHHHHHHHTCCHHH
T ss_pred             ---------------CCCchhHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcCcchhh----hcccccccccchHH
Confidence                           1224579999999999999998874   7999999999999874211    00   000   0  


Q ss_pred             --HHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          216 --ALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       216 --~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                        ..........     ..+++++|+|+++++++..+.   .+..+++++.
T Consensus       206 ~~~~~~~~~~p~-----~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG  251 (255)
T 2q2v_A          206 AQHDLLAEKQPS-----LAFVTPEHLGELVLFLCSEAGSQVRGAAWNVDGG  251 (255)
T ss_dssp             HHHHHHTTTCTT-----CCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred             HHHHHHhccCCC-----CCCcCHHHHHHHHHHHhCCccCCCCCCEEEECCC
Confidence              0010111111     378999999999999987643   2456777654

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=99.91  E-value=6.2e-24  Score=180.31  Aligned_cols=214  Identities=14%  Similarity=0.126  Sum_probs=154.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+..    ...+.+ ..+..   ...++.++.+|+.|.+++.++++ 
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~D~~d~~~v~~~~~~   99 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSA----GAADEVVAAIAA---AGGEAFAVKADVSQESEVEALFAA   99 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH----HHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCCh----HHHHHHHHHHHh---cCCcEEEEECCCCCHHHHHHHHHH
Confidence            4578999999999999999999999999999988541    111111 11111   12578899999999998888775 


Q ss_pred             ------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|++||+||.....      .+++ +..+++|+.++.++++++.    +.+ ..++|++||...+..      
T Consensus       100 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~------  171 (269)
T 4dmm_A          100 VIERWGRLDVLVNNAGITRDTLLLRMKRDDW-QSVLDLNLGGVFLCSRAAAKIMLKQR-SGRIINIASVVGEMG------  171 (269)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCHHHHHC------
T ss_pred             HHHHcCCCCEEEECCCCCCCCCcccCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECchhhcCC------
Confidence                  689999999865421      1223 3789999999999988874    344 579999999776531      


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                      .+....|+.+|.+.+.+.+.++.+   .+++++.++||.+.++....     ..  ..... ..
T Consensus       172 ----------------~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~-----~~--~~~~~-~~  227 (269)
T 4dmm_A          172 ----------------NPGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDMTSE-----LA--AEKLL-EV  227 (269)
T ss_dssp             ----------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBTTSCSCH-----HH--HHHHG-GG
T ss_pred             ----------------CCCchhHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEECCCcCccccc-----cc--HHHHH-hc
Confidence                            122457999999999999988876   37999999999998874321     11  11111 11


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC----CCceEEEecc
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD----AKGRYICSSH  261 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~----~~~~~~~~~~  261 (331)
                      ..+     ..+.+.+|+|+++++++..+.    .|..++++++
T Consensus       228 ~p~-----~r~~~~~dvA~~v~~l~s~~~~~~itG~~i~vdGG  265 (269)
T 4dmm_A          228 IPL-----GRYGEAAEVAGVVRFLAADPAAAYITGQVINIDGG  265 (269)
T ss_dssp             CTT-----SSCBCHHHHHHHHHHHHHCGGGGGCCSCEEEESTT
T ss_pred             CCC-----CCCCCHHHHHHHHHHHhCCcccCCCcCCEEEECCC
Confidence            122     268899999999999998732    2456777654

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=99.91  E-value=1.5e-23  Score=176.97  Aligned_cols=220  Identities=12%  Similarity=0.049  Sum_probs=154.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+.     +..+....  ++.....++.++.+|+.|.+++.++++  
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~-----~~~~~~~~--~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   77 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTK-----EKLEEAKL--EIEQFPGQILTVQMDVRNTDDIQKMIEQI   77 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHH--HHCCSTTCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHH--HHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence            357899999999999999999999999999999987     22222211  111223578999999999998888775  


Q ss_pred             -----CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHH-----hcCCccEEEEecccceeecCCCCCC
Q 020104           82 -----GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCL-----KSGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~-----~~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                           ++|++||+||....      ..+++ +..+++|+.++.++++++.     +.+ ..++|++||...+..      
T Consensus        78 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~-~~~~~~n~~g~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~------  149 (257)
T 3imf_A           78 DEKFGRIDILINNAAGNFICPAEDLSVNGW-NSVINIVLNGTFYCSQAIGKYWIEKGI-KGNIINMVATYAWDA------  149 (257)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTC-CCEEEEECCGGGGSC------
T ss_pred             HHHcCCCCEEEECCCCCCCCChhhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhhCC-CcEEEEECchhhccC------
Confidence                 68999999985432      11223 3789999999999999873     333 579999999776531      


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH----cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE----HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~----~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                                      .+....|+.+|.+.+.+.+.++.+    ++++++.++||.+.++........ .......... 
T Consensus       150 ----------------~~~~~~Y~asKaa~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~~~~~~~-~~~~~~~~~~-  211 (257)
T 3imf_A          150 ----------------GPGVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWI-SEEMAKRTIQ-  211 (257)
T ss_dssp             ----------------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCCCC--------CCSHHHHT-
T ss_pred             ----------------CCCcHHHHHHHHHHHHHHHHHHHHhccccCeEEEEEEECCCcCCcchhhccc-CHHHHHHHHh-
Confidence                            122457999999999998887754    489999999999998854321100 0000011111 


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ....     ..+.+.+|+|+++++++..+.   .|..++++++
T Consensus       212 ~~p~-----~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG  249 (257)
T 3imf_A          212 SVPL-----GRLGTPEEIAGLAYYLCSDEAAYINGTCMTMDGG  249 (257)
T ss_dssp             TSTT-----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             cCCC-----CCCcCHHHHHHHHHHHcCchhcCccCCEEEECCC
Confidence            1111     368899999999999997654   3446677653

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=99.91  E-value=6.3e-24  Score=181.20  Aligned_cols=222  Identities=15%  Similarity=0.144  Sum_probs=158.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+.     +..+....  ++.....++.++.+|+.|.+++.++++  
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~-----~~~~~~~~--~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   79 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNG-----NALAELTD--EIAGGGGEAAALAGDVGDEALHEALVELA   79 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCH-----HHHHHHHH--HHTTTTCCEEECCCCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHH--HHHhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence            357899999999999999999999999999999987     22222111  112223578999999999998888775  


Q ss_pred             -----CccEEEEecccCCC-------CCCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCC
Q 020104           82 -----GCTGVLHVATPVDF-------EDKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                           ++|++||+||....       ..+++ +..+++|+.++.++++++..    .+ ..++|++||...+..+     
T Consensus        80 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----  152 (280)
T 3tox_A           80 VRRFGGLDTAFNNAGALGAMGEISSLSVEGW-RETLDTNLTSAFLAAKYQVPAIAALG-GGSLTFTSSFVGHTAG-----  152 (280)
T ss_dssp             HHHHSCCCEEEECCCCCCSCSCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCSBTTTBC-----
T ss_pred             HHHcCCCCEEEECCCCCCCCCChhhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEcChhhCcCC-----
Confidence                 69999999996531       11223 37899999999999988754    33 4699999997655111     


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                      .++...|+.+|.+.+.+++.++.+.   +++++.++||.+.++.................... 
T Consensus       153 ----------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~-  215 (280)
T 3tox_A          153 ----------------FAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGL-  215 (280)
T ss_dssp             ----------------CTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBSSTTSGGGSTTCCTHHHHHHHTT-
T ss_pred             ----------------CCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCCCCchhhhhccccCHHHHHHHhcc-
Confidence                            1234579999999999999988775   89999999999998864321111111111111111 


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ..+     ..+.+++|+|+++++++..+.   .|..++++++
T Consensus       216 ~p~-----~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG  252 (280)
T 3tox_A          216 HAL-----KRIARPEEIAEAALYLASDGASFVTGAALLADGG  252 (280)
T ss_dssp             STT-----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             Ccc-----CCCcCHHHHHHHHHHHhCccccCCcCcEEEECCC
Confidence            122     268899999999999998643   2456777654

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=99.91  E-value=4.2e-24  Score=181.67  Aligned_cols=218  Identities=15%  Similarity=0.070  Sum_probs=155.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+.     ...+....+.+   ...++.++.+|+.|.+++.++.+  
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~-----~~~~~~~~~~~---~~~~~~~~~~Dv~d~~~v~~~~~~~  101 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTD-----GVKEVADEIAD---GGGSAEAVVADLADLEGAANVAEEL  101 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST-----HHHHHHHHHHT---TTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHH-----HHHHHHHHHHh---cCCcEEEEEecCCCHHHHHHHHHHH
Confidence            357899999999999999999999999999999765     22222222222   23578899999999988877653  


Q ss_pred             ----CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCcc
Q 020104           82 ----GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 ----~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                          ++|+|||+||.....      .+++ +..+++|+.++.++++++.    +.+ ..++|++||...+..        
T Consensus       102 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~IV~isS~~~~~~--------  171 (273)
T 3uf0_A          102 AATRRVDVLVNNAGIIARAPAEEVSLGRW-REVLTVNLDAAWVLSRSFGTAMLAHG-SGRIVTIASMLSFQG--------  171 (273)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSC--------
T ss_pred             HhcCCCcEEEECCCCCCCCCchhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcchHhcCC--------
Confidence                699999999975421      1223 3789999999999998773    445 579999999876531        


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcc
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREE  224 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~  224 (331)
                                    .++...|+.+|.+.+.+++.++.+   .+++++.++||.+.++....... ...........  ..
T Consensus       172 --------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~-~~~~~~~~~~~--~p  234 (273)
T 3uf0_A          172 --------------GRNVAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTANTAALRA-DDERAAEITAR--IP  234 (273)
T ss_dssp             --------------CSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHT-SHHHHHHHHHH--ST
T ss_pred             --------------CCCChhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCchhhccc-CHHHHHHHHhc--CC
Confidence                          122457999999999999999887   58999999999999874221000 00000111111  11


Q ss_pred             cccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          225 YGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       225 ~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      .     ..+.+++|+|+++++++....   .|..++++++
T Consensus       235 ~-----~r~~~pedva~~v~~L~s~~a~~itG~~i~vdGG  269 (273)
T 3uf0_A          235 A-----GRWATPEDMVGPAVFLASDAASYVHGQVLAVDGG  269 (273)
T ss_dssp             T-----SSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             C-----CCCCCHHHHHHHHHHHhCchhcCCcCCEEEECcC
Confidence            1     267899999999999998643   3456777654

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=99.91  E-value=1.5e-23  Score=175.76  Aligned_cols=217  Identities=14%  Similarity=0.134  Sum_probs=153.3

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh---
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI---   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~---   80 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+.     ...+.   +.++    .++.++.+|+.|++++.++.   
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~---~~~~----~~~~~~~~D~~~~~~~~~~~~~~   72 (246)
T 2ag5_A            5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINE-----SKLQE---LEKY----PGIQTRVLDVTKKKQIDQFANEV   72 (246)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHGG---GGGS----TTEEEEECCTTCHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH-----HHHHH---HHhc----cCceEEEeeCCCHHHHHHHHHHh
Confidence            457899999999999999999999999999999986     22222   1111    36889999999999888765   


Q ss_pred             cCccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCcccCC
Q 020104           81 AGCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDMMDET  150 (331)
Q Consensus        81 ~~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~  150 (331)
                      .++|+|||+|+.....      ..++ +..+++|+.++.++++++.    +.+ ..++|++||...+...          
T Consensus        73 ~~id~lv~~Ag~~~~~~~~~~~~~~~-~~~~~~n~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~----------  140 (246)
T 2ag5_A           73 ERLDVLFNVAGFVHHGTVLDCEEKDW-DFSMNLNVRSMYLMIKAFLPKMLAQK-SGNIINMSSVASSVKG----------  140 (246)
T ss_dssp             SCCSEEEECCCCCCCBCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCSBTTTBC----------
T ss_pred             CCCCEEEECCccCCCCCcccCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEechHhCcCC----------
Confidence            3789999999865421      1123 3678999999999988875    345 5799999997655211          


Q ss_pred             CCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCC--ccHHHHHHHHhCCCccc
Q 020104          151 FWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFA--GSVRSSLALILGNREEY  225 (331)
Q Consensus       151 ~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~--~~~~~~~~~~~~~~~~~  225 (331)
                                 +.+...|+.+|.+.+.+++.++.+.   +++++++|||.++++.......  ............. ...
T Consensus       141 -----------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~-~~~  208 (246)
T 2ag5_A          141 -----------VVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKR-QKT  208 (246)
T ss_dssp             -----------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHT-CTT
T ss_pred             -----------CCCCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCcCcCcchhhhhhcccCcHHHHHHHHhc-CCC
Confidence                       1134579999999999999988764   8999999999999874211000  0001111111111 111


Q ss_pred             ccCCCccceeHHHHHHHHHHhhcCCC--C-CceEEEecc
Q 020104          226 GFLLNTSMVHVDDVARAHIFLLEYPD--A-KGRYICSSH  261 (331)
Q Consensus       226 ~~~~~~~~i~v~D~a~~~~~~~~~~~--~-~~~~~~~~~  261 (331)
                           ..+.+.+|+|+++++++..+.  . +..+++++.
T Consensus       209 -----~~~~~~~dvA~~v~~l~s~~~~~~tG~~i~vdgG  242 (246)
T 2ag5_A          209 -----GRFATAEEIAMLCVYLASDESAYVTGNPVIIDGG  242 (246)
T ss_dssp             -----SSCEEHHHHHHHHHHHHSGGGTTCCSCEEEECTT
T ss_pred             -----CCCCCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence                 268899999999999997543  2 445667654

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=99.91  E-value=1.9e-23  Score=177.88  Aligned_cols=220  Identities=15%  Similarity=0.125  Sum_probs=151.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHh--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAI--   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~--   80 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+.     +..+.. +.+.+   ...++.++.+|+.|++++.+++  
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~   91 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE-----KELDECLEIWRE---KGLNVEGSVCDLLSRTERDKLMQT   91 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHh---cCCceEEEECCCCCHHHHHHHHHH
Confidence            357899999999999999999999999999999986     222211 11111   1246889999999999888776  


Q ss_pred             ------cCccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCC
Q 020104           81 ------AGCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        81 ------~~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                            .++|++||+||.....      ..++ +..+++|+.++.++++++.    +.+ ..++|++||...+..     
T Consensus        92 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~-~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~~~-----  164 (273)
T 1ae1_A           92 VAHVFDGKLNILVNNAGVVIHKEAKDFTEKDY-NIIMGTNFEAAYHLSQIAYPLLKASQ-NGNVIFLSSIAGFSA-----  164 (273)
T ss_dssp             HHHHTTSCCCEEEECCCCCCCCCTTTCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-SEEEEEECCGGGTSC-----
T ss_pred             HHHHcCCCCcEEEECCCCCCCCChhhCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcCHhhcCC-----
Confidence                  4689999999865421      1123 3678899999999999874    445 579999999876631     


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCcc--HHHHHHHHh
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGS--VRSSLALIL  219 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~--~~~~~~~~~  219 (331)
                                       .++...|+.+|.+.+.+.+.++.+.   ++++++++||.++++.........  .........
T Consensus       165 -----------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~  227 (273)
T 1ae1_A          165 -----------------LPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFI  227 (273)
T ss_dssp             -----------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHH
T ss_pred             -----------------CCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCchhhhhhhcccCcHHHHHHHH
Confidence                             1224579999999999999988765   899999999999988533211100  001111111


Q ss_pred             CCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          220 GNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       220 ~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      . ....     ..+.+.+|+|+++++++..+.   .+..+++++.
T Consensus       228 ~-~~p~-----~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG  266 (273)
T 1ae1_A          228 V-KTPM-----GRAGKPQEVSALIAFLCFPAASYITGQIIWADGG  266 (273)
T ss_dssp             H-HSTT-----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             h-cCCC-----CCCcCHHHHHHHHHHHhCccccCcCCCEEEECCC
Confidence            0 0111     267899999999999987542   2446677654

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=99.91  E-value=1.8e-24  Score=184.52  Aligned_cols=220  Identities=19%  Similarity=0.146  Sum_probs=154.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+.     +..+. .+.+.+   ...++.++.+|+.|.+++.++++ 
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~~~l~~---~~~~~~~~~~Dv~~~~~v~~~~~~   92 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGE-----EGLRTTLKELRE---AGVEADGRTCDVRSVPEIEALVAA   92 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHh---cCCceEEEECCCCCHHHHHHHHHH
Confidence            357899999999999999999999999999999986     22221 111111   12468899999999998887775 


Q ss_pred             ------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhc------CCccEEEEecccceeecCCCC
Q 020104           82 ------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKS------GTVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~------~~~~~~v~~SS~~~~~~~~~~  143 (331)
                            ++|+|||+||.....      ..++ +..+++|+.++.++++++...      + ..++|++||...+..    
T Consensus        93 ~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~m~~~~-~g~iv~isS~~~~~~----  166 (277)
T 2rhc_B           93 VVERYGPVDVLVNNAGRPGGGATAELADELW-LDVVETNLTGVFRVTKQVLKAGGMLERG-TGRIVNIASTGGKQG----  166 (277)
T ss_dssp             HHHHTCSCSEEEECCCCCCCSCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHTTTCHHHHT-EEEEEEECCGGGTSC----
T ss_pred             HHHHhCCCCEEEECCCCCCCCChhhCCHHHH-HHHHHHHhHHHHHHHHHHhChhhHhhcC-CeEEEEECccccccC----
Confidence                  699999999865421      1122 378899999999999987654      4 579999999765421    


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCcc-H------HH
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGS-V------RS  213 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~-~------~~  213 (331)
                                        .++...|+.+|.+.+.+++.++.+.   ++++++++||.+.++......... -      ..
T Consensus       167 ------------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~  228 (277)
T 2rhc_B          167 ------------------VVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEE  228 (277)
T ss_dssp             ------------------CTTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEECSBCSHHHHHHHHHHHHHHTCCHHH
T ss_pred             ------------------CCCCccHHHHHHHHHHHHHHHHHHHHHhCcEEEEEecCcCcCchhhhhhhhcccccccchHH
Confidence                              1224579999999999999988764   799999999999876311100000 0      00


Q ss_pred             HHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          214 SLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ...... .....     ..+++++|+|+++++++..+.   .+..++++++
T Consensus       229 ~~~~~~-~~~p~-----~r~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdGG  273 (277)
T 2rhc_B          229 AFDRIT-ARVPI-----GRYVQPSEVAEMVAYLIGPGAAAVTAQALNVCGG  273 (277)
T ss_dssp             HHHHHH-HHSTT-----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             HHHHHH-hcCCC-----CCCcCHHHHHHHHHHHhCchhcCCCCcEEEECCC
Confidence            000010 00111     368999999999999997643   3446777664

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=99.91  E-value=4.1e-24  Score=180.17  Aligned_cols=217  Identities=15%  Similarity=0.114  Sum_probs=156.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+.     +..+.. ..+.+   ...++.++.+|+.|.+++.++++ 
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~~Dv~d~~~v~~~~~~   82 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKS-----EGAEAVAAAIRQ---AGGKAIGLECNVTDEQHREAVIKA   82 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSH-----HHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHh---cCCcEEEEECCCCCHHHHHHHHHH
Confidence            457899999999999999999999999999999987     222221 11111   12578999999999998887775 


Q ss_pred             ------CccEEEEecccCCCC-----CCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCc
Q 020104           82 ------GCTGVLHVATPVDFE-----DKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                            ++|++||+||.....     ..++ +..+++|+.++.++++++.    +.+ ..++|++||...+..       
T Consensus        83 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~-------  153 (256)
T 3gaf_A           83 ALDQFGKITVLVNNAGGGGPKPFDMPMSDF-EWAFKLNLFSLFRLSQLAAPHMQKAG-GGAILNISSMAGENT-------  153 (256)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCTTCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCGGGTCC-------
T ss_pred             HHHHcCCCCEEEECCCCCCCCCCCCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEcCHHHcCC-------
Confidence                  799999999865421     1223 3788999999999999874    344 579999999876521       


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE  223 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  223 (331)
                                     .++...|+.+|.+.+.+++.++.+.   +++++.++||.+.++.......   ......... ..
T Consensus       154 ---------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~---~~~~~~~~~-~~  214 (256)
T 3gaf_A          154 ---------------NVRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALATVLT---PEIERAMLK-HT  214 (256)
T ss_dssp             ---------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHCC---HHHHHHHHT-TC
T ss_pred             ---------------CCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEEccccCchhhhccC---HHHHHHHHh-cC
Confidence                           1234589999999999999988774   7999999999998763211000   111111111 11


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      .+     ..+.+++|+|+++++++....   .|..++++++
T Consensus       215 p~-----~r~~~~~dva~~~~~L~s~~~~~itG~~i~vdgG  250 (256)
T 3gaf_A          215 PL-----GRLGEAQDIANAALFLCSPAAAWISGQVLTVSGG  250 (256)
T ss_dssp             TT-----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             CC-----CCCCCHHHHHHHHHHHcCCcccCccCCEEEECCC
Confidence            22     378899999999999997543   3556777654

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=99.91  E-value=1.4e-23  Score=177.93  Aligned_cols=218  Identities=13%  Similarity=0.055  Sum_probs=155.0

Q ss_pred             CceEEEecCc--chhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            5 KGRVCVTGGT--GFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         5 ~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      +|+||||||+  |+||++++++|+++|++|++++|+.     ...+.++.+.+..   ....++.+|+.|++++.++++ 
T Consensus         9 ~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~~l~~~~---~~~~~~~~D~~~~~~v~~~~~~   80 (265)
T 1qsg_A            9 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-----KLKGRVEEFAAQL---GSDIVLQCDVAEDASIDTMFAE   80 (265)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST-----TTHHHHHHHHHHT---TCCCEEECCTTCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH-----HHHHHHHHHHHhc---CCcEEEEccCCCHHHHHHHHHH
Confidence            4689999999  9999999999999999999999976     2222222222111   234688999999998888775 


Q ss_pred             ------CccEEEEecccCCC-----------CCCChhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCC
Q 020104           82 ------GCTGVLHVATPVDF-----------EDKEPEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~-----------~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~  143 (331)
                            ++|+|||+|+....           ...++ +..+++|+.++.++++++...- ...++|++||...+..    
T Consensus        81 ~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~----  155 (265)
T 1qsg_A           81 LGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGF-KIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERA----  155 (265)
T ss_dssp             HHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHH-HHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSB----
T ss_pred             HHHHcCCCCEEEECCCCCCccccCCCccccCCHHHH-HHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhccC----
Confidence                  68999999986531           11123 3789999999999999998752 0259999999766521    


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhC
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILG  220 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~  220 (331)
                                        .++...|+.+|.+.+.+++.++.+.   ++++++++||.++++..... . ...........
T Consensus       156 ------------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-~-~~~~~~~~~~~  215 (265)
T 1qsg_A          156 ------------------IPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGI-K-DFRKMLAHCEA  215 (265)
T ss_dssp             ------------------CTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGS-T-THHHHHHHHHH
T ss_pred             ------------------CCCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCccchhhcc-c-ccHHHHHHHHh
Confidence                              1224479999999999999988775   79999999999998853321 1 11111111111


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      . ..+     ..+.+++|+|+++++++..+.   .+..+++++.
T Consensus       216 ~-~p~-----~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG  253 (265)
T 1qsg_A          216 V-TPI-----RRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGG  253 (265)
T ss_dssp             H-STT-----SSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred             c-CCC-----CCCCCHHHHHHHHHHHhCchhcCccCCEEEECCC
Confidence            1 111     257899999999999997543   2456777654

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=99.91  E-value=7.3e-24  Score=179.28  Aligned_cols=222  Identities=14%  Similarity=0.082  Sum_probs=157.0

Q ss_pred             CCceEEEecCc--chhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGGT--GFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      .+|++|||||+  |+||++++++|+++|++|++++|+.     ...+..+.+.+..   ..+.++.+|+.|++++.++++
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~~l~~~~---~~~~~~~~D~~~~~~v~~~~~   78 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE-----RLRPEAEKLAEAL---GGALLFRADVTQDEELDALFA   78 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCG-----GGHHHHHHHHHHT---TCCEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCH-----HHHHHHHHHHHhc---CCcEEEECCCCCHHHHHHHHH
Confidence            45789999999  9999999999999999999999986     2222222222111   236889999999998888775


Q ss_pred             -------CccEEEEecccCCC----------CCCChhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCC
Q 020104           82 -------GCTGVLHVATPVDF----------EDKEPEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        82 -------~~d~Vih~a~~~~~----------~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~  143 (331)
                             ++|+|||+||....          ...++ +..+++|+.++.++++++...- ...++|++||...+..    
T Consensus        79 ~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~----  153 (261)
T 2wyu_A           79 GVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDW-LLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKV----  153 (261)
T ss_dssp             HHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHH-HHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSB----
T ss_pred             HHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHH-HHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccccCC----
Confidence                   68999999986431          11223 3789999999999999998751 0259999999765521    


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhC
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILG  220 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~  220 (331)
                                        .++...|+.+|.+.+.+++.++.+.   ++++++++||.++++..... . ...........
T Consensus       154 ------------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-~-~~~~~~~~~~~  213 (261)
T 2wyu_A          154 ------------------VPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSI-P-GFTKMYDRVAQ  213 (261)
T ss_dssp             ------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCTGGGGC-T-THHHHHHHHHH
T ss_pred             ------------------CCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCCCcCchhhhc-c-ccHHHHHHHHh
Confidence                              1224579999999999999988775   89999999999998753221 1 11111111111


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc-ccC
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH-TLT  264 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~-~~s  264 (331)
                      . ..+     ..+.+++|+|+++++++....   .+..+++++. .++
T Consensus       214 ~-~p~-----~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~~~~  255 (261)
T 2wyu_A          214 T-APL-----RRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGYHIM  255 (261)
T ss_dssp             H-STT-----SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGB
T ss_pred             c-CCC-----CCCCCHHHHHHHHHHHcChhhcCCCCCEEEECCCcccc
Confidence            1 111     257899999999999997533   2456777654 444

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=99.91  E-value=2.1e-24  Score=183.13  Aligned_cols=226  Identities=16%  Similarity=0.134  Sum_probs=157.1

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcc-ccccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSK-DLSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      .++|+||||||+|+||++++++|+++|++|++++|+..     ... ....+.+.  ...++.++.+|+.|.+++.++++
T Consensus        12 ~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~-----~~~~~~~~l~~~--~~~~~~~~~~Dl~~~~~~~~~~~   84 (265)
T 1h5q_A           12 FVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAA-----DAVEVTEKVGKE--FGVKTKAYQCDVSNTDIVTKTIQ   84 (265)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCT-----THHHHHHHHHHH--HTCCEEEEECCTTCHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcch-----hhHHHHHHHHHh--cCCeeEEEEeeCCCHHHHHHHHH
Confidence            34578999999999999999999999999999999762     211 11111110  02468899999999988887764


Q ss_pred             -------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCCCCC
Q 020104           82 -------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 -------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                             ++|+|||+|+.....      ..++ +..+++|+.++.++++++...    +..+++|++||...+.....  
T Consensus        85 ~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~-~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~--  161 (265)
T 1h5q_A           85 QIDADLGPISGLIANAGVSVVKPATELTHEDF-AFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQS--  161 (265)
T ss_dssp             HHHHHSCSEEEEEECCCCCCCSCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEE--
T ss_pred             HHHHhcCCCCEEEECCCcCCCCchhhCCHHHH-HHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhccccc--
Confidence                   489999999865421      1122 367899999999999987643    21379999999876531100  


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                          +..         ...+...|+.+|.+.+.+++.++.+.   +++++++|||.++++.....    ...........
T Consensus       162 ----~~~---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~----~~~~~~~~~~~  224 (265)
T 1h5q_A          162 ----SLN---------GSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHM----DKKIRDHQASN  224 (265)
T ss_dssp             ----ETT---------EECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGS----CHHHHHHHHHT
T ss_pred             ----ccc---------ccccccccHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccccccc----chhHHHHHHhc
Confidence                000         11335689999999999999988764   89999999999998753321    11111111111


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                       ...     ..+++++|+|+++++++..+.   .+..++++++
T Consensus       225 -~~~-----~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG  261 (265)
T 1h5q_A          225 -IPL-----NRFAQPEEMTGQAILLLSDHATYMTGGEYFIDGG  261 (265)
T ss_dssp             -CTT-----SSCBCGGGGHHHHHHHHSGGGTTCCSCEEEECTT
T ss_pred             -Ccc-----cCCCCHHHHHHHHHhhccCchhcCcCcEEEecCC
Confidence             111     267899999999999997643   3556777654

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=99.91  E-value=7.5e-24  Score=181.06  Aligned_cols=234  Identities=16%  Similarity=0.116  Sum_probs=157.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcc-----cCCcccccccc-CCCCCCCcEEEEeCCCCCCccHH
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPE-----HRNSKDLSFLK-NLPGASERLRIFHADLSHPDGFD   77 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~D~~~~~~~~   77 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+.+...     ....+.++.+. .+.....++.++.+|+.|.+++.
T Consensus        14 ~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~   93 (280)
T 3pgx_A           14 QGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAALR   93 (280)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHH
Confidence            3578999999999999999999999999999998531100     00112221111 11122357889999999999888


Q ss_pred             HHhc-------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecC
Q 020104           78 AAIA-------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYN  140 (331)
Q Consensus        78 ~~~~-------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~  140 (331)
                      ++++       ++|++||+||.....      .+++ +..+++|+.++.++++++..    .+...++|++||...+.. 
T Consensus        94 ~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~-~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-  171 (280)
T 3pgx_A           94 ELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQW-DTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLKA-  171 (280)
T ss_dssp             HHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSC-
T ss_pred             HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHH-HHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhhccC-
Confidence            8775       699999999965421      1223 37888999999999988743    221368999999776531 


Q ss_pred             CCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHH
Q 020104          141 DKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLAL  217 (331)
Q Consensus       141 ~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~  217 (331)
                                           .+....|+.+|.+.+.+++.++.+   ++++++.++||.++++.....   ........
T Consensus       172 ---------------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~---~~~~~~~~  227 (280)
T 3pgx_A          172 ---------------------TPGNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIEPE---AMMEIFAR  227 (280)
T ss_dssp             ---------------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCHH---HHHHHHHH
T ss_pred             ---------------------CCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccCcccchh---hhhhhhhc
Confidence                                 122457999999999999998887   589999999999998853320   11111100


Q ss_pred             HhCCCcc--cccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecccc
Q 020104          218 ILGNREE--YGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSHTL  263 (331)
Q Consensus       218 ~~~~~~~--~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~~~  263 (331)
                      .......  ........+++++|+|+++++++..+.   .|..++++++..
T Consensus       228 ~~~~~~~~~~~~~~~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~~  278 (280)
T 3pgx_A          228 HPSFVHSFPPMPVQPNGFMTADEVADVVAWLAGDGSGTLTGTQIPVDKGAL  278 (280)
T ss_dssp             CGGGGGGSCCBTTBCSSCBCHHHHHHHHHHHHSGGGTTCSSCEEEESTTGG
T ss_pred             CchhhhhhhhcccCCCCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCcc
Confidence            0000001  111111258999999999999997544   245677776543

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=99.91  E-value=5.5e-24  Score=177.17  Aligned_cols=195  Identities=23%  Similarity=0.223  Sum_probs=137.0

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |+.++|+||||||+|+||++++++|+++|++|++++|+.     ...+.+.  .++    .++.++.+|+.|.+++.+++
T Consensus         1 M~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~-----~~~~~~~--~~~----~~~~~~~~D~~~~~~~~~~~   69 (234)
T 2ehd_A            1 MEGMKGAVLITGASRGIGEATARLLHAKGYRVGLMARDE-----KRLQALA--AEL----EGALPLPGDVREEGDWARAV   69 (234)
T ss_dssp             ---CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHH--HHS----TTCEEEECCTTCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHH--HHh----hhceEEEecCCCHHHHHHHH
Confidence            777778999999999999999999999999999999986     2222111  111    26788999999998888776


Q ss_pred             c-------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHH----HHhcCCccEEEEecccceeecCCCC
Q 020104           81 A-------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKS----CLKSGTVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        81 ~-------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~----~~~~~~~~~~v~~SS~~~~~~~~~~  143 (331)
                      +       ++|+|||+||.....      .+++ +..+++|+.++.+++++    +++.+ .+++|++||...+..    
T Consensus        70 ~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~-~~~~~~N~~~~~~~~~~~~~~~~~~~-~~~iv~isS~~~~~~----  143 (234)
T 2ehd_A           70 AAMEEAFGELSALVNNAGVGVMKPVHELTLEEW-RLVLDTNLTGAFLGIRHAVPALLRRG-GGTIVNVGSLAGKNP----  143 (234)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCSCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHTTT-CEEEEEECCTTTTSC----
T ss_pred             HHHHHHcCCCCEEEECCCcCCCCCcccCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhCC-CcEEEEECCchhcCC----
Confidence            4       689999999864421      1123 37889999998755554    45555 689999999876521    


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhC
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILG  220 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~  220 (331)
                                        .++...|+.+|.+.+.+++.++.+   ++++++++|||.+.++....     .         
T Consensus       144 ------------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-----~---------  191 (234)
T 2ehd_A          144 ------------------FKGGAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTGFAGN-----T---------  191 (234)
T ss_dssp             ------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEECC------------------------
T ss_pred             ------------------CCCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCcccc-----c---------
Confidence                              122457999999999999888765   48999999999987653211     0         


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCCC
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYPD  251 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~  251 (331)
                       +..+      .+++.+|+|+++++++..+.
T Consensus       192 -~~~~------~~~~~~dvA~~~~~l~~~~~  215 (234)
T 2ehd_A          192 -PGQA------WKLKPEDVAQAVLFALEMPG  215 (234)
T ss_dssp             -------------CCHHHHHHHHHHHHHSCC
T ss_pred             -cccc------CCCCHHHHHHHHHHHhCCCc
Confidence             0001      25799999999999998654

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=9e-24  Score=178.41  Aligned_cols=224  Identities=18%  Similarity=0.138  Sum_probs=152.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|++|||||+|+||++++++|+++|++|+++.++..    ..... ...+.+   ...++.++.+|+.|.+++.++++ 
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~   79 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAA----EGAATAVAEIEK---LGRSALAIKADLTNAAEVEAAISA   79 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSC----HHHHHHHHHHHT---TTSCCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCH----HHHHHHHHHHHh---cCCceEEEEcCCCCHHHHHHHHHH
Confidence            4578999999999999999999999999999855541    11111 111211   23568899999999998888775 


Q ss_pred             ------CccEEEEecccCC-C---CCCC--hhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCCCCccc
Q 020104           82 ------GCTGVLHVATPVD-F---EDKE--PEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        82 ------~~d~Vih~a~~~~-~---~~~~--~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                            ++|++||+||... .   ...+  ..+..+++|+.++.++++++...- ...++|++||...+..+        
T Consensus        80 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------  151 (259)
T 3edm_A           80 AADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGRDGG--------  151 (259)
T ss_dssp             HHHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHCC--------
T ss_pred             HHHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhccCC--------
Confidence                  6899999998552 1   1111  113789999999999999998763 02489999997765111        


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcC--CcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccc
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHG--LDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYG  226 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~--~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (331)
                                   .++...|+.+|.+.+.+.+.++.+.+  ++++.+.||.+.++.......   ....... .....+ 
T Consensus       152 -------------~~~~~~Y~asKaa~~~l~~~la~e~~~~I~vn~v~PG~v~T~~~~~~~~---~~~~~~~-~~~~p~-  213 (259)
T 3edm_A          152 -------------GPGALAYATSKGAVMTFTRGLAKEVGPKIRVNAVCPGMISTTFHDTFTK---PEVRERV-AGATSL-  213 (259)
T ss_dssp             -------------STTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCC--------------------------
T ss_pred             -------------CCCcHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCcCcccccccC---hHHHHHH-HhcCCC-
Confidence                         12245799999999999999888753  899999999998764322110   0000000 011111 


Q ss_pred             cCCCccceeHHHHHHHHHHhhcCCC---CCceEEEeccccC
Q 020104          227 FLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSHTLT  264 (331)
Q Consensus       227 ~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~~~s  264 (331)
                          ..+.+++|+|+++++++....   .|..++++|+...
T Consensus       214 ----~r~~~pedva~~v~~L~s~~~~~itG~~i~vdGg~~~  250 (259)
T 3edm_A          214 ----KREGSSEDVAGLVAFLASDDAAYVTGACYDINGGVLF  250 (259)
T ss_dssp             -----CCBCHHHHHHHHHHHHSGGGTTCCSCEEEESBCSSB
T ss_pred             ----CCCcCHHHHHHHHHHHcCccccCccCCEEEECCCcCC
Confidence                367899999999999997653   3556788765443

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=99.91  E-value=8.9e-24  Score=178.84  Aligned_cols=222  Identities=15%  Similarity=0.084  Sum_probs=148.5

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |...+|++|||||+|+||++++++|+++|++|++++|+.     ...+.+..  ++   ..++.++.+|+.|.+++.+++
T Consensus         5 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~-----~~~~~~~~--~~---~~~~~~~~~D~~~~~~~~~~~   74 (261)
T 3n74_A            5 MSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDK-----AGAERVAG--EI---GDAALAVAADISKEADVDAAV   74 (261)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHH--HH---CTTEEEEECCTTSHHHHHHHH
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCH-----HHHHHHHH--Hh---CCceEEEEecCCCHHHHHHHH
Confidence            455568999999999999999999999999999999987     22222211  11   246899999999999888877


Q ss_pred             c-------CccEEEEecccCCC-------CCCChhhHHHHHHHHHHHHHHHHHHhcC-------CccEEEEecccceeec
Q 020104           81 A-------GCTGVLHVATPVDF-------EDKEPEEVITQRAINGTLGILKSCLKSG-------TVKRVVYTSSNAAVFY  139 (331)
Q Consensus        81 ~-------~~d~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~~~~-------~~~~~v~~SS~~~~~~  139 (331)
                      +       ++|+|||+|+....       ..+++ +..+++|+.++.++++++...-       ...++|++||...+..
T Consensus        75 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~  153 (261)
T 3n74_A           75 EAALSKFGKVDILVNNAGIGHKPQNAELVEPEEF-DRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGRP  153 (261)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCSCCGGGSCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTSC
T ss_pred             HHHHHhcCCCCEEEECCccCCCCCCcccCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcCC
Confidence            5       68999999996541       11223 3688999999988888775431       1246999999776521


Q ss_pred             CCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHH
Q 020104          140 NDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLA  216 (331)
Q Consensus       140 ~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~  216 (331)
                                            .+....|+.+|.+.+.+++.++.+   .+++++.++||.+.++...............
T Consensus       154 ----------------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~  211 (261)
T 3n74_A          154 ----------------------RPNLAWYNATKGWVVSVTKALAIELAPAKIRVVALNPVAGETPLLTTFMGEDSEEIRK  211 (261)
T ss_dssp             ----------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC--------------------
T ss_pred             ----------------------CCCccHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccChhhhhhcccCcHHHHH
Confidence                                  122457999999999999998877   4899999999999887533211100000000


Q ss_pred             HHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          217 LILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       217 ~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ... .....     ..+++++|+|+++++++....   .|..+++++.
T Consensus       212 ~~~-~~~~~-----~~~~~~~dva~~~~~l~s~~~~~itG~~i~vdgG  253 (261)
T 3n74_A          212 KFR-DSIPM-----GRLLKPDDLAEAAAFLCSPQASMITGVALDVDGG  253 (261)
T ss_dssp             ------CTT-----SSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred             HHh-hcCCc-----CCCcCHHHHHHHHHHHcCCcccCcCCcEEEecCC
Confidence            000 11111     378999999999999997543   3456777653

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.91  E-value=7.8e-24  Score=178.57  Aligned_cols=216  Identities=13%  Similarity=0.080  Sum_probs=150.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+..     . +..  ..++    .. .++.+|+.|.+++.++++  
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~-----~-~~~--~~~~----~~-~~~~~D~~~~~~~~~~~~~~   71 (256)
T 2d1y_A            5 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPE-----G-KEV--AEAI----GG-AFFQVDLEDERERVRFVEEA   71 (256)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTT-----H-HHH--HHHH----TC-EEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChh-----H-HHH--HHHh----hC-CEEEeeCCCHHHHHHHHHHH
Confidence            4578999999999999999999999999999999872     2 111  1111    13 788999999988887764  


Q ss_pred             -----CccEEEEecccCCCC---CCC--hhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCCcc
Q 020104           82 -----GCTGVLHVATPVDFE---DKE--PEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~---~~~--~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                           ++|+|||+||.....   ..+  ..+..+++|+.++.++++++..    .+ ..++|++||...+..        
T Consensus        72 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~~~--------  142 (256)
T 2d1y_A           72 AYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVG-GGAIVNVASVQGLFA--------  142 (256)
T ss_dssp             HHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT-CEEEEEECCGGGTSB--------
T ss_pred             HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEccccccCC--------
Confidence                 689999999865421   111  1237889999999999887754    34 579999999776521        


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccH--HHHHHHHhCCC
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSV--RSSLALILGNR  222 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~--~~~~~~~~~~~  222 (331)
                                    .++...|+.+|.+.+.+++.++.+.   ++++++++||.+.++..........  ........ ..
T Consensus       143 --------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~-~~  207 (256)
T 2d1y_A          143 --------------EQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWE-DL  207 (256)
T ss_dssp             --------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC--------CHHHH-TT
T ss_pred             --------------CCCChhHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCccCchhhhccccccCCHHHHHHHH-hc
Confidence                          1224579999999999999988764   7999999999997652110000000  00000000 00


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ..     ...+++++|+|+++++++..+.   .+..++++++
T Consensus       208 ~~-----~~~~~~~~dvA~~~~~l~s~~~~~~~G~~~~v~gG  244 (256)
T 2d1y_A          208 HA-----LRRLGKPEEVAEAVLFLASEKASFITGAILPVDGG  244 (256)
T ss_dssp             ST-----TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             CC-----CCCCcCHHHHHHHHHHHhCchhcCCCCCEEEECCC
Confidence            11     1378999999999999997652   3446777654

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=99.91  E-value=3.3e-24  Score=179.63  Aligned_cols=215  Identities=16%  Similarity=0.158  Sum_probs=152.5

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEE-ecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTT-VRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      +|+||||||+|+||++++++|+++|++|+++ .|+.     ...+.+ +.+..   ...++.++.+|+.|.+++.++++ 
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~   72 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSA-----KAAEEVSKQIEA---YGGQAITFGGDVSKEADVEAMMKT   72 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH-----HHHHHHHHHHHH---HTCEEEEEECCTTSHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCH-----HHHHHHHHHHHh---cCCcEEEEeCCCCCHHHHHHHHHH
Confidence            3689999999999999999999999999985 6765     222111 11111   12468889999999998888875 


Q ss_pred             ------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|+|||+|+.....      ..++ +..+++|+.++.++++++.+    .+ ..++|++||...+...     
T Consensus        73 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~~~-----  145 (244)
T 1edo_A           73 AIDAWGTIDVVVNNAGITRDTLLIRMKKSQW-DEVIDLNLTGVFLCTQAATKIMMKKR-KGRIINIASVVGLIGN-----  145 (244)
T ss_dssp             HHHHSSCCSEEEECCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCTHHHHCC-----
T ss_pred             HHHHcCCCCEEEECCCCCCCcCcccCCHHHH-HHHHHhhhHHHHHHHHHHHHHHHhcC-CCEEEEECChhhcCCC-----
Confidence                  689999999865421      1123 37889999999999888765    35 6799999998665311     


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                       ++...|+.+|.+.+.+++.++.+.   +++++++|||.++++..... .   .......... 
T Consensus       146 -----------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-~---~~~~~~~~~~-  203 (244)
T 1edo_A          146 -----------------IGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKL-G---EDMEKKILGT-  203 (244)
T ss_dssp             -----------------TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTT-C---HHHHHHHHTS-
T ss_pred             -----------------CCCccchhhHHHHHHHHHHHHHHhhhcCCEEEEEeeCccccchhhhc-C---hHHHHHHhhc-
Confidence                             224579999999999999888763   89999999999998742211 1   1111111111 


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC----CCceEEEecc
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD----AKGRYICSSH  261 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~----~~~~~~~~~~  261 (331)
                      ...     ..+++.+|+|+++++++..+.    .+..+++++.
T Consensus       204 ~~~-----~~~~~~~dva~~~~~l~~~~~~~~~~G~~~~v~gG  241 (244)
T 1edo_A          204 IPL-----GRTGQPENVAGLVEFLALSPAASYITGQAFTIDGG  241 (244)
T ss_dssp             CTT-----CSCBCHHHHHHHHHHHHHCSGGGGCCSCEEEESTT
T ss_pred             CCC-----CCCCCHHHHHHHHHHHhCCCccCCcCCCEEEeCCC
Confidence            111     268899999999999984332    2456777654

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=99.91  E-value=5.8e-24  Score=180.12  Aligned_cols=214  Identities=14%  Similarity=0.146  Sum_probs=149.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|++|||||+|+||+++++.|+++|++|++++|+.     +..+...  .+.   ..++.++.+|+.|.+++.++++  
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~-----~~~~~~~--~~~---~~~~~~~~~Dv~d~~~v~~~~~~~   95 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTRE-----DKLKEIA--ADL---GKDVFVFSANLSDRKSIKQLAEVA   95 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHH--HHH---CSSEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHH--HHh---CCceEEEEeecCCHHHHHHHHHHH
Confidence            457899999999999999999999999999999986     2222211  111   2468999999999998888775  


Q ss_pred             -----CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCCCCc
Q 020104           82 -----GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                           ++|+|||+||.....      ..++ +..+++|+.++.++.+++    ++.+ ..++|++||...+..       
T Consensus        96 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~Iv~isS~~~~~~-------  166 (266)
T 3grp_A           96 EREMEGIDILVNNAGITRDGLFVRMQDQDW-DDVLAVNLTAASTLTRELIHSMMRRR-YGRIINITSIVGVVG-------  166 (266)
T ss_dssp             HHHHTSCCEEEECCCCC-----CCCHHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCC------------
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcC-CcEEEEECCHHHcCC-------
Confidence                 799999999965421      1123 378889999966666655    4455 579999999776531       


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE  223 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  223 (331)
                                     .++...|+.+|.+.+.+++.++.+.   +++++.++||.+.++..... .   ......... ..
T Consensus       167 ---------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~-~---~~~~~~~~~-~~  226 (266)
T 3grp_A          167 ---------------NPGQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAMTDKL-N---EKQKEAIMA-MI  226 (266)
T ss_dssp             -----------------CHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHTC-C---HHHHHHHHT-TC
T ss_pred             ---------------CCCchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCcCCCchhhcc-C---HHHHHHHHh-cC
Confidence                           1224579999999999999888764   79999999999987632211 1   111111111 11


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      .+     ..+.+.+|+|+++++++....   .|..++++++
T Consensus       227 p~-----~r~~~~edvA~~v~~L~s~~~~~itG~~i~vdGG  262 (266)
T 3grp_A          227 PM-----KRMGIGEEIAFATVYLASDEAAYLTGQTLHINGG  262 (266)
T ss_dssp             TT-----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             CC-----CCCcCHHHHHHHHHHHhCccccCccCCEEEECCC
Confidence            22     267899999999999997643   2456677654

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=99.91  E-value=1.8e-23  Score=178.53  Aligned_cols=218  Identities=15%  Similarity=0.133  Sum_probs=145.3

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      +|++|||||+|+||+++++.|+++|++|++++|+..    +..+. ...+..   ...++.++.+|+.|.+++.++++  
T Consensus        29 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~Dv~d~~~v~~~~~~~  101 (280)
T 4da9_A           29 RPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDA----EGVAPVIAELSG---LGARVIFLRADLADLSSHQATVDAV  101 (280)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCH----HHHHHHHHHHHH---TTCCEEEEECCTTSGGGHHHHHHHH
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCH----HHHHHHHHHHHh---cCCcEEEEEecCCCHHHHHHHHHHH
Confidence            467999999999999999999999999999997541    11111 111111   12578999999999999888775  


Q ss_pred             -----CccEEEEecccCC--C------CCCChhhHHHHHHHHHHHHHHHHHHhc----C--CccEEEEecccceeecCCC
Q 020104           82 -----GCTGVLHVATPVD--F------EDKEPEEVITQRAINGTLGILKSCLKS----G--TVKRVVYTSSNAAVFYNDK  142 (331)
Q Consensus        82 -----~~d~Vih~a~~~~--~------~~~~~~~~~~~~n~~~~~~l~~~~~~~----~--~~~~~v~~SS~~~~~~~~~  142 (331)
                           ++|++||+||...  .      ..+++ +..+++|+.++.++++++...    +  ...++|++||...+..   
T Consensus       102 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~---  177 (280)
T 4da9_A          102 VAEFGRIDCLVNNAGIASIVRDDFLDLKPENF-DTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMT---  177 (280)
T ss_dssp             HHHHSCCCEEEEECC------CCGGGCCHHHH-HHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC--------
T ss_pred             HHHcCCCCEEEECCCccccCCCChhhCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhccC---
Confidence                 7899999998732  1      12223 378889999999888887643    1  0258999999776531   


Q ss_pred             CCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHh
Q 020104          143 DVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALIL  219 (331)
Q Consensus       143 ~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~  219 (331)
                                         .++...|+.+|.+.+.+.+.++.+   .+++++.++||.+.++........    ......
T Consensus       178 -------------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~----~~~~~~  234 (280)
T 4da9_A          178 -------------------SPERLDYCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRSDMTAAVSGK----YDGLIE  234 (280)
T ss_dssp             ---------------------CCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC-------------------
T ss_pred             -------------------CCCccHHHHHHHHHHHHHHHHHHHHHHhCcEEEEEeecCCcCCchhhcchh----HHHHHh
Confidence                               122457999999999999998887   479999999999988753321110    000001


Q ss_pred             CCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          220 GNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       220 ~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ......     ..+.+.+|+|+++++++....   .|..++++++
T Consensus       235 ~~~~p~-----~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG  274 (280)
T 4da9_A          235 SGLVPM-----RRWGEPEDIGNIVAGLAGGQFGFATGSVIQADGG  274 (280)
T ss_dssp             ------------CCBCHHHHHHHHHHHHTSTTGGGTTCEEEESTT
T ss_pred             hcCCCc-----CCcCCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence            101111     368899999999999998654   2456777654

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=99.91  E-value=9.8e-24  Score=180.82  Aligned_cols=216  Identities=15%  Similarity=0.106  Sum_probs=152.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      ++|+||||||+|+||+++++.|+++|++|++++|+.     +..+.+ +.+.+   ...++.++.+|+.|.+++.++++ 
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~-----~~~~~~~~~l~~---~~~~~~~~~~Dl~d~~~v~~~~~~  114 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQ-----KSCDSVVDEIKS---FGYESSGYAGDVSKKEEISEVINK  114 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSH-----HHHHHHHHHHHT---TTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCH-----HHHHHHHHHHHh---cCCceeEEECCCCCHHHHHHHHHH
Confidence            357899999999999999999999999999988876     222211 11211   12468899999999998888763 


Q ss_pred             ------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|+|||+||.....      ..++ +..+++|+.++.++++++.    +.+ .+++|++||...+...     
T Consensus       115 ~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~~~-----  187 (285)
T 2c07_A          115 ILTEHKNVDILVNNAGITRDNLFLRMKNDEW-EDVLRTNLNSLFYITQPISKRMINNR-YGRIINISSIVGLTGN-----  187 (285)
T ss_dssp             HHHHCSCCCEEEECCCCCCCCCTTTCCHHHH-HHHHHHHTTHHHHHHHHHHHHHHHHT-CEEEEEECCTHHHHCC-----
T ss_pred             HHHhcCCCCEEEECCCCCCCCchhhCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEECChhhccCC-----
Confidence                  689999999865421      1123 3788999999877777665    445 6799999998765311     


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                       ++...|+.+|.+.+.+++.++.+.   ++++++++||.+.++.... ..   ......... .
T Consensus       188 -----------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-~~---~~~~~~~~~-~  245 (285)
T 2c07_A          188 -----------------VGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDK-IS---EQIKKNIIS-N  245 (285)
T ss_dssp             -----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC------CC---HHHHHHHHT-T
T ss_pred             -----------------CCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcEecCchhh-cC---HHHHHHHHh-h
Confidence                             224579999999999999888764   8999999999998875332 11   111111111 1


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ...     ..+++++|+|+++++++..+.   .+..++++++
T Consensus       246 ~~~-----~~~~~~~dvA~~~~~l~~~~~~~~~G~~i~v~gG  282 (285)
T 2c07_A          246 IPA-----GRMGTPEEVANLACFLSSDKSGYINGRVFVIDGG  282 (285)
T ss_dssp             CTT-----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             CCC-----CCCCCHHHHHHHHHHHhCCCcCCCCCCEEEeCCC
Confidence            111     268999999999999997643   3446677654

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=99.91  E-value=1e-23  Score=178.38  Aligned_cols=216  Identities=17%  Similarity=0.144  Sum_probs=153.6

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      +|++|||||+|+||++++++|+++|++|++++|+.     +..+. ...+..   ...++.++.+|+.|.+++.++++  
T Consensus        14 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~~~l~~---~~~~~~~~~~D~~~~~~~~~~~~~~   85 (260)
T 2zat_A           14 NKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQ-----ENVDRTVATLQG---EGLSVTGTVCHVGKAEDRERLVAMA   85 (260)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHh---cCCceEEEEccCCCHHHHHHHHHHH
Confidence            47899999999999999999999999999999986     22211 111111   12468889999999988887765  


Q ss_pred             -----CccEEEEecccCCC-------CCCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCC
Q 020104           82 -----GCTGVLHVATPVDF-------EDKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                           ++|+|||+|+....       ..+++ +..+++|+.++.++++++.    +.+ .+++|++||...+..      
T Consensus        86 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~-~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~------  157 (260)
T 2zat_A           86 VNLHGGVDILVSNAAVNPFFGNIIDATEEVW-DKILHVNVKATVLMTKAVVPEMEKRG-GGSVLIVSSVGAYHP------  157 (260)
T ss_dssp             HHHHSCCCEEEECCCCCCCCBCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCGGGTSC------
T ss_pred             HHHcCCCCEEEECCCCCCCCCCcccCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEechhhcCC------
Confidence                 79999999986421       11123 3788999999988888765    445 679999999877631      


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                      .++...|+.+|.+.+.+++.++.+.   ++++++++||.+.++........  ........ ..
T Consensus       158 ----------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~--~~~~~~~~-~~  218 (260)
T 2zat_A          158 ----------------FPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWMD--KARKEYMK-ES  218 (260)
T ss_dssp             ----------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSTTHHHHSS--HHHHHHHH-HH
T ss_pred             ----------------CCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcccCccchhcccC--hHHHHHHH-hc
Confidence                            1234589999999999999988764   89999999999988742110000  00000000 00


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEec
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSS  260 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~  260 (331)
                      ...     ..+++++|+|+++++++..+.   .+..+++++
T Consensus       219 ~~~-----~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdg  254 (260)
T 2zat_A          219 LRI-----RRLGNPEDCAGIVSFLCSEDASYITGETVVVGG  254 (260)
T ss_dssp             HTC-----SSCBCGGGGHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred             CCC-----CCCCCHHHHHHHHHHHcCcccCCccCCEEEECC
Confidence            111     368899999999999997653   355778765

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=99.91  E-value=7e-24  Score=181.26  Aligned_cols=220  Identities=15%  Similarity=0.108  Sum_probs=154.0

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      ..+|+||||||+|+||++++++|+++|++|++++|+.     ...+.......  ....++.++.+|+.|.+++.++++ 
T Consensus        32 l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~-----~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~  104 (279)
T 3ctm_A           32 LKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSH-----PADEKAEHLQK--TYGVHSKAYKCNISDPKSVEETISQ  104 (279)
T ss_dssp             CTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSS-----CCHHHHHHHHH--HHCSCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHH--hcCCcceEEEeecCCHHHHHHHHHH
Confidence            3457899999999999999999999999999999987     23222211110  012468899999999998888775 


Q ss_pred             ------CccEEEEecccCCC-CC---CC---hhhHHHHHHHHH----HHHHHHHHHhcCCccEEEEecccceeecCCCCC
Q 020104           82 ------GCTGVLHVATPVDF-ED---KE---PEEVITQRAING----TLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~-~~---~~---~~~~~~~~n~~~----~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                            ++|+|||+|+.... ..   ..   ..+..+++|+.+    ++.+++.+++.+ .+++|++||...+...    
T Consensus       105 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~~iv~isS~~~~~~~----  179 (279)
T 3ctm_A          105 QEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNG-KGSLIITSSISGKIVN----  179 (279)
T ss_dssp             HHHHHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCCTTSCC-----
T ss_pred             HHHHhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEECchHhccCC----
Confidence                  48999999986532 11   11   113678899999    567777777776 7899999997754210    


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                                      ..++...|+.+|.+.|.+++.++.+.   + ++++++||.+.++.... ..   ......... 
T Consensus       180 ----------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~-~v~~v~Pg~v~t~~~~~-~~---~~~~~~~~~-  237 (279)
T 3ctm_A          180 ----------------IPQLQAPYNTAKAACTHLAKSLAIEWAPFA-RVNTISPGYIDTDITDF-AS---KDMKAKWWQ-  237 (279)
T ss_dssp             ------------------CCHHHHHHHHHHHHHHHHHHHHHTTTTC-EEEEEEECSBSSTTTSS-CC---HHHHHHHHH-
T ss_pred             ----------------CCCCcccHHHHHHHHHHHHHHHHHHhcccC-CEEEEeccCCccccccc-cC---hHHHHHHHH-
Confidence                            01234579999999999999998874   5 99999999998875421 11   111111110 


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ....     ..+++++|+|+++++++..+.   .+..++++++
T Consensus       238 ~~p~-----~~~~~~~dvA~~~~~l~s~~~~~~tG~~i~vdgG  275 (279)
T 3ctm_A          238 LTPL-----GREGLTQELVGGYLYLASNASTFTTGSDVVIDGG  275 (279)
T ss_dssp             HSTT-----CSCBCGGGTHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             hCCc-----cCCcCHHHHHHHHHHHhCccccCccCCEEEECCC
Confidence            1111     268899999999999997642   3446677654

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=99.91  E-value=4e-23  Score=174.00  Aligned_cols=212  Identities=16%  Similarity=0.113  Sum_probs=151.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+.     +..+...  .++   ..++.++.+|+.|.+++.++++  
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~--~~~---~~~~~~~~~D~~~~~~~~~~~~~~   73 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLD-----EEGAATA--REL---GDAARYQHLDVTIEEDWQRVVAYA   73 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHH--HTT---GGGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHH--HHh---CCceeEEEecCCCHHHHHHHHHHH
Confidence            357899999999999999999999999999999986     2222111  111   1468889999999998888775  


Q ss_pred             -----CccEEEEecccCCCC------CCChhhHHHHHHHHHHHH----HHHHHHhcCCccEEEEecccceeecCCCCCCc
Q 020104           82 -----GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLG----ILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~----l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                           ++|+|||+|+.....      .+++ +..+++|+.++..    +++.+++.+ ..++|++||...+..       
T Consensus        74 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~-~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~-------  144 (254)
T 1hdc_A           74 REEFGSVDGLVNNAGISTGMFLETESVERF-RKVVEINLTGVFIGMKTVIPAMKDAG-GGSIVNISSAAGLMG-------  144 (254)
T ss_dssp             HHHHSCCCEEEECCCCCCCSCGGGSCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSC-------
T ss_pred             HHHcCCCCEEEECCCCCCCCChhhCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECchhhccC-------
Confidence                 799999999865421      1123 3788999999874    455555666 689999999876531       


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC-C
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN-R  222 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~  222 (331)
                                     .++...|+.+|.+.+.+++.++.+.   ++++++++||.++++...        .    .... .
T Consensus       145 ---------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~--------~----~~~~~~  197 (254)
T 1hdc_A          145 ---------------LALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMTA--------E----TGIRQG  197 (254)
T ss_dssp             ---------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHH--------H----HTCCCS
T ss_pred             ---------------CCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccCcCcccc--------c----cchhHH
Confidence                           1224579999999999999988764   799999999999886311        0    0000 0


Q ss_pred             cccccC-CCccce-eHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          223 EEYGFL-LNTSMV-HVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       223 ~~~~~~-~~~~~i-~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ..+... ....+. +.+|+|+++++++..+.   .+..+++++.
T Consensus       198 ~~~~~~~p~~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG  241 (254)
T 1hdc_A          198 EGNYPNTPMGRVGNEPGEIAGAVVKLLSDTSSYVTGAELAVDGG  241 (254)
T ss_dssp             TTSCTTSTTSSCB-CHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             HHHHhcCCCCCCCCCHHHHHHHHHHHhCchhcCCCCCEEEECCC
Confidence            001000 112577 99999999999997643   2445667654

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=99.91  E-value=1.5e-23  Score=177.38  Aligned_cols=219  Identities=14%  Similarity=0.079  Sum_probs=152.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEec-CCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVR-SELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      .+|+||||||+|+||++++++|+++|++|++++| +.     ...+.+ +.+..   ...++.++.+|+.|.+++.++++
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~-----~~~~~~~~~l~~---~~~~~~~~~~D~~~~~~~~~~~~   77 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKE-----DEANSVLEEIKK---VGGEAIAVKGDVTVESDVINLVQ   77 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH-----HHHHHHHHHHHH---TTCEEEEEECCTTSHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCCh-----HHHHHHHHHHHh---cCCceEEEECCCCCHHHHHHHHH
Confidence            3578999999999999999999999999999999 44     111111 11111   12468889999999998887775


Q ss_pred             -------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCCCCC
Q 020104           82 -------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 -------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                             ++|+|||+|+.....      ..++ +..+++|+.++.++++++...    +...++|++||...+.  +   
T Consensus        78 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~-~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~--~---  151 (261)
T 1gee_A           78 SAIKEFGKLDVMINNAGLENPVSSHEMSLSDW-NKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI--P---  151 (261)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS--C---
T ss_pred             HHHHHcCCCCEEEECCCCCCCCCcccCCHHHH-HHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcC--C---
Confidence                   789999999865421      1123 378899999999888876643    2136999999976542  0   


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                                       .++...|+.+|.+.+.+++.++.+.   +++++++|||.++++.......  .......... 
T Consensus       152 -----------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~--~~~~~~~~~~-  211 (261)
T 1gee_A          152 -----------------WPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFA--DPEQRADVES-  211 (261)
T ss_dssp             -----------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHH--SHHHHHHHHT-
T ss_pred             -----------------CCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCcCCchhhhccc--ChhHHHHHHh-
Confidence                             1235689999999999998888764   8999999999999874221000  0011111111 


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ....     ..+++++|+|+++++++..+.   .+..+++++.
T Consensus       212 ~~~~-----~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg  249 (261)
T 1gee_A          212 MIPM-----GYIGEPEEIAAVAAWLASSEASYVTGITLFADGG  249 (261)
T ss_dssp             TCTT-----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             cCCC-----CCCcCHHHHHHHHHHHhCccccCCCCcEEEEcCC
Confidence            1111     268899999999999987532   2446677654

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=99.91  E-value=4.2e-23  Score=173.35  Aligned_cols=217  Identities=14%  Similarity=0.125  Sum_probs=148.3

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      ++|++|||||+|+||+++++.|+++|++|++++|+..    +..+  ..+.+.   ..++.++.+|+.|.+++.++++  
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~----~~~~--~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~   76 (249)
T 2ew8_A            6 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA----PEAE--AAIRNL---GRRVLTVKCDVSQPGDVEAFGKQV   76 (249)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC----HHHH--HHHHHT---TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCch----hHHH--HHHHhc---CCcEEEEEeecCCHHHHHHHHHHH
Confidence            3578999999999999999999999999999999761    0111  111111   2468899999999998887753  


Q ss_pred             -----CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHH----HHhcCCccEEEEecccceeecCCCCCCc
Q 020104           82 -----GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKS----CLKSGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~----~~~~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                           ++|+|||+||.....      .+++ +..+++|+.++.+++++    +++.+ ..++|++||...+..       
T Consensus        77 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~-~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~-------  147 (249)
T 2ew8_A           77 ISTFGRCDILVNNAGIYPLIPFDELTFEQW-KKTFEINVDSGFLMAKAFVPGMKRNG-WGRIINLTSTTYWLK-------  147 (249)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGGSC-------
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHHcC-CeEEEEEcchhhccC-------
Confidence                 799999999865421      1123 37889999998887777    55555 679999999876631       


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE  223 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  223 (331)
                                     .++...|+.+|.+.+.+++.++.+.   ++++++++||.+.++........   .... ... . 
T Consensus       148 ---------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~---~~~~-~~~-~-  206 (249)
T 2ew8_A          148 ---------------IEAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASALS---AMFD-VLP-N-  206 (249)
T ss_dssp             ---------------CSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC-----------------------C-
T ss_pred             ---------------CCCchhHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcCcCccchhcccc---chhh-HHH-H-
Confidence                           1224579999999999999988764   89999999999998753211000   0000 000 0 


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ..  .....+.+.+|+|+++++++..+.   .+..++++++
T Consensus       207 ~~--~~~~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdGG  245 (249)
T 2ew8_A          207 ML--QAIPRLQVPLDLTGAAAFLASDDASFITGQTLAVDGG  245 (249)
T ss_dssp             TT--SSSCSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESSS
T ss_pred             hh--CccCCCCCHHHHHHHHHHHcCcccCCCCCcEEEECCC
Confidence            00  011368899999999999997542   2445667654

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=99.91  E-value=3.7e-23  Score=177.21  Aligned_cols=218  Identities=11%  Similarity=0.029  Sum_probs=154.1

Q ss_pred             CceEEEecCc--chhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            5 KGRVCVTGGT--GFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         5 ~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      +|+||||||+  |+||+++++.|+++|++|++++|+.     ...+.+..+.+..   .++.++.+|+.|.+++.++++ 
T Consensus        21 ~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~~l~~~~---~~~~~~~~Dl~~~~~v~~~~~~   92 (285)
T 2p91_A           21 GKRALITGVANERSIAYGIAKSFHREGAQLAFTYATP-----KLEKRVREIAKGF---GSDLVVKCDVSLDEDIKNLKKF   92 (285)
T ss_dssp             TCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSG-----GGHHHHHHHHHHT---TCCCEEECCTTCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCH-----HHHHHHHHHHHhc---CCeEEEEcCCCCHHHHHHHHHH
Confidence            4689999999  9999999999999999999999986     2222222222111   236788999999998887775 


Q ss_pred             ------CccEEEEecccCCC----------CCCChhhHHHHHHHHHHHHHHHHHHhcC--CccEEEEecccceeecCCCC
Q 020104           82 ------GCTGVLHVATPVDF----------EDKEPEEVITQRAINGTLGILKSCLKSG--TVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~----------~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~  143 (331)
                            ++|+|||+||....          ...++ +..+++|+.++.++++++...-  ...++|++||...+..    
T Consensus        93 ~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~----  167 (285)
T 2p91_A           93 LEENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGF-KIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEKV----  167 (285)
T ss_dssp             HHHHTSCCCEEEECCCCCCGGGGSSCGGGCCHHHH-HHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTSB----
T ss_pred             HHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhccC----
Confidence                  68999999986532          11123 3789999999999999988652  1369999999765521    


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhC
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILG  220 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~  220 (331)
                                        .++...|+.+|.+.+.+++.++.+.   ++++++++||.++++..... . ...........
T Consensus       168 ------------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-~-~~~~~~~~~~~  227 (285)
T 2p91_A          168 ------------------VPHYNVMGIAKAALESTVRYLAYDIAKHGHRINAISAGPVKTLAAYSI-T-GFHLLMEHTTK  227 (285)
T ss_dssp             ------------------CTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCSCC--C-T-THHHHHHHHHH
T ss_pred             ------------------CCCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCcccCchhhcc-c-chHHHHHHHHh
Confidence                              1123479999999999999888764   89999999999999854321 1 11111111111


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      . ..+     ..+.+++|+|+++++++....   .|..++++++
T Consensus       228 ~-~p~-----~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdgg  265 (285)
T 2p91_A          228 V-NPF-----GKPITIEDVGDTAVFLCSDWARAITGEVVHVDNG  265 (285)
T ss_dssp             H-STT-----SSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred             c-CCC-----CCCcCHHHHHHHHHHHcCCcccCCCCCEEEECCC
Confidence            1 111     257899999999999997533   2446677654

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=99.91  E-value=9.3e-24  Score=179.77  Aligned_cols=218  Identities=17%  Similarity=0.187  Sum_probs=148.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEE-ecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTT-VRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      +|+||||||+|+||++++++|+++|++|+++ .|+.     +..+.+ ..+.+   ...++.++.+|+.|.+++.++++ 
T Consensus        26 ~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~-----~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~v~~~~~~   97 (272)
T 4e3z_A           26 TPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANR-----EAADAVVAAITE---SGGEAVAIPGDVGNAADIAAMFSA   97 (272)
T ss_dssp             SCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH-----HHHHHHHHHHHH---TTCEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCh-----hHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHH
Confidence            4689999999999999999999999999887 4443     222211 11111   12578899999999998887765 


Q ss_pred             ------CccEEEEecccCCC-------CCCChhhHHHHHHHHHHHHHHHHHHhc------CCccEEEEecccceeecCCC
Q 020104           82 ------GCTGVLHVATPVDF-------EDKEPEEVITQRAINGTLGILKSCLKS------GTVKRVVYTSSNAAVFYNDK  142 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~~~------~~~~~~v~~SS~~~~~~~~~  142 (331)
                            ++|+|||+||....       ..+++ +..+++|+.++.++++++...      +...++|++||...+...  
T Consensus        98 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--  174 (272)
T 4e3z_A           98 VDRQFGRLDGLVNNAGIVDYPQRVDEMSVERI-ERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGS--  174 (272)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHCC--
T ss_pred             HHHhCCCCCEEEECCCCCCCCCChhhCCHHHH-HHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccCC--
Confidence                  68999999997542       11223 378999999999998887653      114689999998766311  


Q ss_pred             CCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHh
Q 020104          143 DVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALIL  219 (331)
Q Consensus       143 ~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~  219 (331)
                                         +.....|+.+|.+.+.+++.++.+.   +++++.++||.+.++......   .........
T Consensus       175 -------------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~---~~~~~~~~~  232 (272)
T 4e3z_A          175 -------------------ATQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLHASGG---LPDRAREMA  232 (272)
T ss_dssp             -------------------TTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC--------------------
T ss_pred             -------------------CCCcchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCCcCCcccccC---ChHHHHHHh
Confidence                               1123469999999999999988775   899999999999987533210   000011000


Q ss_pred             CCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          220 GNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       220 ~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                       .....     ..+.+++|+|+++++++....   .|..++++++
T Consensus       233 -~~~~~-----~~~~~~edvA~~i~~l~s~~~~~~tG~~i~vdgG  271 (272)
T 4e3z_A          233 -PSVPM-----QRAGMPEEVADAILYLLSPSASYVTGSILNVSGG  271 (272)
T ss_dssp             --CCTT-----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             -hcCCc-----CCCcCHHHHHHHHHHHhCCccccccCCEEeecCC
Confidence             01111     267789999999999997543   2456777654

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=99.91  E-value=1.1e-22  Score=173.56  Aligned_cols=216  Identities=17%  Similarity=0.145  Sum_probs=153.9

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEec-CCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCC----ccHHH
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVR-SELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHP----DGFDA   78 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~----~~~~~   78 (331)
                      +|++|||||+|+||++++++|+++|++|++++| +.     +..+.. ..+.+..  ..++.++.+|+.|.    +++.+
T Consensus        11 ~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~-----~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~   83 (276)
T 1mxh_A           11 CPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSE-----GAAQRLVAELNAAR--AGSAVLCKGDLSLSSSLLDCCED   83 (276)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH-----HHHHHHHHHHHHHS--TTCEEEEECCCSSSTTHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCh-----HHHHHHHHHHHHhc--CCceEEEeccCCCccccHHHHHH
Confidence            468999999999999999999999999999999 54     221111 1111100  14688999999999    88877


Q ss_pred             Hhc-------CccEEEEecccCCCC------C-----------CChhhHHHHHHHHHHHHHHHHHHhcC--Cc------c
Q 020104           79 AIA-------GCTGVLHVATPVDFE------D-----------KEPEEVITQRAINGTLGILKSCLKSG--TV------K  126 (331)
Q Consensus        79 ~~~-------~~d~Vih~a~~~~~~------~-----------~~~~~~~~~~n~~~~~~l~~~~~~~~--~~------~  126 (331)
                      +++       ++|+|||+||.....      .           .++ +..+++|+.++.++++++...-  ..      .
T Consensus        84 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g  162 (276)
T 1mxh_A           84 IIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQV-AELFGSNAVAPLFLIRAFARRQGEGGAWRSRNL  162 (276)
T ss_dssp             HHHHHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHH-HHHHHHHTHHHHHHHHHHHHTC-------CCCE
T ss_pred             HHHHHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHH-HHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCc
Confidence            765       689999999864321      1           222 3789999999999999988742  13      7


Q ss_pred             EEEEecccceeecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCC
Q 020104          127 RVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFI  203 (331)
Q Consensus       127 ~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~  203 (331)
                      ++|++||...+..                      .++...|+.+|.+.+.+++.++.+.   ++++++++||.++++ .
T Consensus       163 ~iv~isS~~~~~~----------------------~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~PG~v~t~-~  219 (276)
T 1mxh_A          163 SVVNLCDAMTDLP----------------------LPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLP-P  219 (276)
T ss_dssp             EEEEECCGGGGSC----------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC-S
T ss_pred             EEEEECchhhcCC----------------------CCCCeehHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCC-c
Confidence            9999999876631                      1224579999999999999988765   899999999999998 2


Q ss_pred             CCCCCccHHHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          204 CPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                        ...   .......... ....    +++.+++|+|+++++++..+.   .|..++++++
T Consensus       220 --~~~---~~~~~~~~~~-~p~~----r~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG  270 (276)
T 1mxh_A          220 --AMP---QETQEEYRRK-VPLG----QSEASAAQIADAIAFLVSKDAGYITGTTLKVDGG  270 (276)
T ss_dssp             --SSC---HHHHHHHHTT-CTTT----SCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             --cCC---HHHHHHHHhc-CCCC----CCCCCHHHHHHHHHHHhCccccCccCcEEEECCc
Confidence              111   1111111111 1111    238899999999999997543   2446677654

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=99.91  E-value=3.8e-23  Score=174.52  Aligned_cols=214  Identities=19%  Similarity=0.160  Sum_probs=149.6

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |+..+|++|||||+|+||+++++.|++.|++|++++|+..     ..  .+.+.+     .++.++.+|+.|.+++.+++
T Consensus        23 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~-----~~--~~~~~~-----~~~~~~~~Dv~~~~~v~~~~   90 (260)
T 3gem_A           23 MTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEH-----AS--VTELRQ-----AGAVALYGDFSCETGIMAFI   90 (260)
T ss_dssp             ----CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCC-----HH--HHHHHH-----HTCEEEECCTTSHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChH-----HH--HHHHHh-----cCCeEEECCCCCHHHHHHHH
Confidence            3344578999999999999999999999999999999872     21  111111     24788999999999888877


Q ss_pred             c-------CccEEEEecccCCCCCCC--h--hhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCC
Q 020104           81 A-------GCTGVLHVATPVDFEDKE--P--EEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        81 ~-------~~d~Vih~a~~~~~~~~~--~--~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                      +       ++|+|||+||.......+  +  .+..+++|+.++.++++++..    .+ ..++|++||...+..      
T Consensus        91 ~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~~~------  163 (260)
T 3gem_A           91 DLLKTQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASE-VADIVHISDDVTRKG------  163 (260)
T ss_dssp             HHHHHHCSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSS-SCEEEEECCGGGGTC------
T ss_pred             HHHHHhcCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcEEEEECChhhcCC------
Confidence            4       689999999965422111  1  136889999999999888754    34 579999999876531      


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc--CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH--GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE  223 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  223 (331)
                                      .++...|+.+|.+.+.+++.++.++  +++++.++||.+.++.....  ..    ..... ...
T Consensus       164 ----------------~~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~t~~~~~~--~~----~~~~~-~~~  220 (260)
T 3gem_A          164 ----------------SSKHIAYCATKAGLESLTLSFAARFAPLVKVNGIAPALLMFQPKDDA--AY----RANAL-AKS  220 (260)
T ss_dssp             ----------------CSSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECTTCC----------------------C
T ss_pred             ----------------CCCcHhHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccCCCCCH--HH----HHHHH-hcC
Confidence                            1234589999999999999998876  49999999999987642210  00    00000 011


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCCCCCc-eEEEecc
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYPDAKG-RYICSSH  261 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~-~~~~~~~  261 (331)
                      .+     ..+..++|+|+++++++......| .++++++
T Consensus       221 p~-----~r~~~~edva~~v~~L~~~~~itG~~i~vdGG  254 (260)
T 3gem_A          221 AL-----GIEPGAEVIYQSLRYLLDSTYVTGTTLTVNGG  254 (260)
T ss_dssp             CS-----CCCCCTHHHHHHHHHHHHCSSCCSCEEEESTT
T ss_pred             CC-----CCCCCHHHHHHHHHHHhhCCCCCCCEEEECCC
Confidence            11     256789999999999997655544 6777653

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=99.91  E-value=2e-23  Score=176.15  Aligned_cols=217  Identities=14%  Similarity=0.108  Sum_probs=154.8

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEE-ecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTT-VRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      +|++|||||+|+||++++++|+++|++|+++ .|+.     ...+.. +.+.   ....++.++.+|+.|.+++.++++ 
T Consensus         4 ~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~-----~~~~~~~~~~~---~~~~~~~~~~~Dv~~~~~v~~~~~~   75 (258)
T 3oid_A            4 NKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSK-----KAALETAEEIE---KLGVKVLVVKANVGQPAKIKEMFQQ   75 (258)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCH-----HHHHHHHHHHH---TTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCH-----HHHHHHHHHHH---hcCCcEEEEEcCCCCHHHHHHHHHH
Confidence            5789999999999999999999999999987 6665     222221 1111   123578999999999998888775 


Q ss_pred             ------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|++||+||.....      ..++ +..+++|+.++.++++++.    +.+ ..++|++||...+..      
T Consensus        76 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~-~~~~~vN~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~~~------  147 (258)
T 3oid_A           76 IDETFGRLDVFVNNAASGVLRPVMELEETHW-DWTMNINAKALLFCAQEAAKLMEKNG-GGHIVSISSLGSIRY------  147 (258)
T ss_dssp             HHHHHSCCCEEEECCCCCCCSCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHTTT-CEEEEEEEEGGGTSB------
T ss_pred             HHHHcCCCCEEEECCCCCCCCChhhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECchhhCCC------
Confidence                  579999999854321      1122 3689999999999988874    444 579999999776521      


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                      .++...|+.+|.+.+.+++.++.+.   +++++.++||.+.++...... .. ......... .
T Consensus       148 ----------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~-~~-~~~~~~~~~-~  208 (258)
T 3oid_A          148 ----------------LENYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHFP-NR-EDLLEDARQ-N  208 (258)
T ss_dssp             ----------------CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECCBCSGGGGGCT-TH-HHHHHHHHH-H
T ss_pred             ----------------CCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcChhhhhcc-cC-HHHHHHHHh-c
Confidence                            1235689999999999999998875   799999999999887433211 11 111111111 1


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ...     ..+.+++|+|+++++++....   .|..++++++
T Consensus       209 ~p~-----~r~~~~~dva~~v~~L~s~~~~~itG~~i~vdGG  245 (258)
T 3oid_A          209 TPA-----GRMVEIKDMVDTVEFLVSSKADMIRGQTIIVDGG  245 (258)
T ss_dssp             CTT-----SSCBCHHHHHHHHHHHTSSTTTTCCSCEEEESTT
T ss_pred             CCC-----CCCcCHHHHHHHHHHHhCcccCCccCCEEEECCC
Confidence            122     268899999999999998653   2456777654

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=99.91  E-value=2.2e-23  Score=174.70  Aligned_cols=197  Identities=13%  Similarity=0.125  Sum_probs=148.6

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC-------eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHH
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY-------SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFD   77 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~   77 (331)
                      +|+||||||+|+||++++++|+++|+       +|++++|+.     ...+.+..  ++.....++.++.+|+.|.+++.
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~-----~~~~~~~~--~~~~~~~~~~~~~~D~~~~~~v~   74 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTA-----ADLEKISL--ECRAEGALTDTITADISDMADVR   74 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCH-----HHHHHHHH--HHHTTTCEEEEEECCTTSHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCH-----HHHHHHHH--HHHccCCeeeEEEecCCCHHHHH
Confidence            57899999999999999999999999       999999986     22222111  11111256889999999999888


Q ss_pred             HHhc-------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecC
Q 020104           78 AAIA-------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYN  140 (331)
Q Consensus        78 ~~~~-------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~  140 (331)
                      ++++       ++|+|||+||.....      ..++ +..+++|+.++.++++++..    .+ .+++|++||...+.. 
T Consensus        75 ~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~~-  151 (244)
T 2bd0_A           75 RLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDF-DYTMNTNLKGTFFLTQALFALMERQH-SGHIFFITSVAATKA-  151 (244)
T ss_dssp             HHHHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSC-
T ss_pred             HHHHHHHHhCCCCCEEEEcCCcCCcCccccCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEEecchhcCC-
Confidence            8775       699999999865421      1123 37889999999999988743    45 579999999876631 


Q ss_pred             CCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHH
Q 020104          141 DKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLAL  217 (331)
Q Consensus       141 ~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~  217 (331)
                                           .++...|+.+|.+.+.+++.++.+   ++++++++|||.++++..... ..        
T Consensus       152 ---------------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-~~--------  201 (244)
T 2bd0_A          152 ---------------------FRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKV-DD--------  201 (244)
T ss_dssp             ---------------------CTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCC-CS--------
T ss_pred             ---------------------CCCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEECCCccchhhhhc-cc--------
Confidence                                 123458999999999999887764   479999999999999854321 00        


Q ss_pred             HhCCCcccccCCCccceeHHHHHHHHHHhhcCCC
Q 020104          218 ILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD  251 (331)
Q Consensus       218 ~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~  251 (331)
                          ..      ...+++++|+|+++++++..+.
T Consensus       202 ----~~------~~~~~~~~dva~~~~~l~~~~~  225 (244)
T 2bd0_A          202 ----EM------QALMMMPEDIAAPVVQAYLQPS  225 (244)
T ss_dssp             ----TT------GGGSBCHHHHHHHHHHHHTSCT
T ss_pred             ----cc------cccCCCHHHHHHHHHHHHhCCc
Confidence                00      1268999999999999998654

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=99.91  E-value=1.8e-23  Score=177.82  Aligned_cols=221  Identities=18%  Similarity=0.111  Sum_probs=154.1

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |...+|+||||||+|+||++++++|+++|++|++++|+..    ...+.+...  +.....++.++.+|+.|.+++.+++
T Consensus        25 m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~----~~~~~~~~~--~~~~~~~~~~~~~D~~~~~~v~~~~   98 (271)
T 4iin_A           25 MQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNA----EVADALKNE--LEEKGYKAAVIKFDAASESDFIEAI   98 (271)
T ss_dssp             CCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH----HHHHHHHHH--HHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCH----HHHHHHHHH--HHhcCCceEEEECCCCCHHHHHHHH
Confidence            3445678999999999999999999999999999999652    111111111  1111257899999999999888877


Q ss_pred             c-------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCC
Q 020104           81 A-------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        81 ~-------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~  143 (331)
                      +       ++|+|||+||.....      .+++ +..+++|+.++.++++++..    .+ ..++|++||...+..    
T Consensus        99 ~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~----  172 (271)
T 4iin_A           99 QTIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDF-HHVIDNNLTSAFIGCREALKVMSKSR-FGSVVNVASIIGERG----  172 (271)
T ss_dssp             HHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHHC----
T ss_pred             HHHHHhcCCCCEEEECCCcCCCcccccCCHHHH-HHHHHhccHHHHHHHHHHHHHHhhcC-CCEEEEEechhhcCC----
Confidence            5       799999999975422      1123 37889999999888877643    34 579999999776531    


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhC
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILG  220 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~  220 (331)
                                        .++...|+.+|.+.+.+++.++.+   .+++++.++||.+.++.......    .... ...
T Consensus       173 ------------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~----~~~~-~~~  229 (271)
T 4iin_A          173 ------------------NMGQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDMNANLKD----ELKA-DYV  229 (271)
T ss_dssp             ------------------CTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCC-----------------CG
T ss_pred             ------------------CCCchHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcccCCchhhhcH----HHHH-HHH
Confidence                              123568999999999999998877   48999999999998774321100    0000 000


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      .....     ..+.+.+|+|+++++++..+.   .|..++++++
T Consensus       230 ~~~~~-----~~~~~p~dvA~~i~~l~s~~~~~itG~~i~vdGG  268 (271)
T 4iin_A          230 KNIPL-----NRLGSAKEVAEAVAFLLSDHSSYITGETLKVNGG  268 (271)
T ss_dssp             GGCTT-----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             hcCCc-----CCCcCHHHHHHHHHHHhCCCcCCCcCCEEEeCCC
Confidence            01111     368899999999999997643   3456677654

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=99.91  E-value=2.1e-23  Score=177.10  Aligned_cols=222  Identities=16%  Similarity=0.103  Sum_probs=151.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+.     +..+.. ..+.+. ....++.++.+|+.|.+++.++++ 
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~v~~~~~~   85 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSS-----EGLEASKAAVLET-APDAEVLTTVADVSDEAQVEAYVTA   85 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHHH-CTTCCEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHhh-cCCceEEEEEccCCCHHHHHHHHHH
Confidence            357899999999999999999999999999999986     222211 111110 002468899999999998888775 


Q ss_pred             ------CccEEEEecccCCC-------CCCChhhHHHHHHHHHHHHHHHH----HHhcCCccEEEEecccceeecCCCCC
Q 020104           82 ------GCTGVLHVATPVDF-------EDKEPEEVITQRAINGTLGILKS----CLKSGTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~----~~~~~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                            ++|+|||+||....       ...++ +..+++|+.++..++++    +++.+ ..++|++||...+..     
T Consensus        86 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~-~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~-----  158 (267)
T 1iy8_A           86 TTERFGRIDGFFNNAGIEGKQNPTESFTAAEF-DKVVSINLRGVFLGLEKVLKIMREQG-SGMVVNTASVGGIRG-----  158 (267)
T ss_dssp             HHHHHSCCSEEEECCCCCCCCBCGGGSCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTSB-----
T ss_pred             HHHHcCCCCEEEECCCcCCCCCCcccCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEcchhhccC-----
Confidence                  68999999986532       11123 37889999888765554    44555 679999999776521     


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCC----CCccHHHHHHH
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPK----FAGSVRSSLAL  217 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~----~~~~~~~~~~~  217 (331)
                                       .++...|+.+|.+.+.+.+.++.+.   ++++++++||.++++.....    ...........
T Consensus       159 -----------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~  221 (267)
T 1iy8_A          159 -----------------IGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEE  221 (267)
T ss_dssp             -----------------CSSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHH
T ss_pred             -----------------CCCCccHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEeCCCcCcchhccccccChhhhhhHHHH
Confidence                             1224579999999999999888763   89999999999987631100    00111100001


Q ss_pred             HhCCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          218 ILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       218 ~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      .... ...     ..+.+.+|+|+++++++..+.   .|..++++++
T Consensus       222 ~~~~-~p~-----~r~~~~~dvA~~v~~l~s~~~~~~tG~~i~vdGG  262 (267)
T 1iy8_A          222 FIQV-NPS-----KRYGEAPEIAAVVAFLLSDDASYVNATVVPIDGG  262 (267)
T ss_dssp             HHTT-CTT-----CSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred             Hhcc-CCC-----CCCcCHHHHHHHHHHHcCccccCCCCCEEEECCC
Confidence            1111 111     268899999999999997642   2445667553

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.91  E-value=4.8e-23  Score=172.55  Aligned_cols=214  Identities=16%  Similarity=0.153  Sum_probs=153.2

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |...+|++|||||+|+||++++++|+++|++|++++|+.     +..+...  .+.     ++.++.+|+.|.+++.+++
T Consensus         1 m~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~--~~~-----~~~~~~~D~~~~~~~~~~~   68 (245)
T 1uls_A            1 MRLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEE-----GPLREAA--EAV-----GAHPVVMDVADPASVERGF   68 (245)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHH--HTT-----TCEEEECCTTCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHH--HHc-----CCEEEEecCCCHHHHHHHH
Confidence            655678999999999999999999999999999999986     2222111  111     3788999999999888776


Q ss_pred             c-------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCCCC
Q 020104           81 A-------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        81 ~-------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~  143 (331)
                      +       ++|+|||+||.....      .+++ +..+++|+.++.++++++...    + ..++|++||.. +. +.  
T Consensus        69 ~~~~~~~g~id~lvn~Ag~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~-~~-~~--  142 (245)
T 1uls_A           69 AEALAHLGRLDGVVHYAGITRDNFHWKMPLEDW-ELVLRVNLTGSFLVAKAASEAMREKN-PGSIVLTASRV-YL-GN--  142 (245)
T ss_dssp             HHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHHHHHHTTTC-CEEEEEECCGG-GG-CC--
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEEccch-hc-CC--
Confidence            5       489999999865421      1122 378899999999998887643    4 57999999987 42 11  


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhC
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILG  220 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~  220 (331)
                                         ++...|+.+|...+.+.+.++.+.   ++++++++||.+.++.... ...   ........
T Consensus       143 -------------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~-~~~---~~~~~~~~  199 (245)
T 1uls_A          143 -------------------LGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAK-VPE---KVREKAIA  199 (245)
T ss_dssp             -------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSS-SCH---HHHHHHHH
T ss_pred             -------------------CCchhHHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCcCcchhh-cCH---HHHHHHHh
Confidence                               123579999999999999887764   7999999999998775322 111   11111111


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCCC--C-CceEEEecc
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYPD--A-KGRYICSSH  261 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~-~~~~~~~~~  261 (331)
                      . ...     ..+++.+|+|+++++++..+.  . +..+.+++.
T Consensus       200 ~-~p~-----~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG  237 (245)
T 1uls_A          200 A-TPL-----GRAGKPLEVAYAALFLLSDESSFITGQVLFVDGG  237 (245)
T ss_dssp             T-CTT-----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             h-CCC-----CCCcCHHHHHHHHHHHhCchhcCCcCCEEEECCC
Confidence            1 111     257899999999999997543  2 445667554

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=99.91  E-value=4e-23  Score=175.35  Aligned_cols=216  Identities=14%  Similarity=0.179  Sum_probs=154.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCc-cccccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNS-KDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      ++|+||||||+|+||++++++|+++|++|+++.+...    ... +..+.+..   ...++.++.+|+.|.+++.++++ 
T Consensus        25 ~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~----~~~~~~~~~l~~---~~~~~~~~~~Dl~~~~~~~~~~~~   97 (267)
T 4iiu_A           25 MSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDA----AGAQETLNAIVA---NGGNGRLLSFDVANREQCREVLEH   97 (267)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH----HHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCch----HHHHHHHHHHHh---cCCceEEEEecCCCHHHHHHHHHH
Confidence            4578999999999999999999999999987765431    111 11111111   23578999999999998888775 


Q ss_pred             ------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHH-----hcCCccEEEEecccceeecCCCCC
Q 020104           82 ------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCL-----KSGTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~-----~~~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                            ++|+|||+||.....      .+++ +..+++|+.++.++++++.     +.+ ..++|++||...+..     
T Consensus        98 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~~~~~-~g~iv~isS~~~~~~-----  170 (267)
T 4iiu_A           98 EIAQHGAWYGVVSNAGIARDAAFPALSNDDW-DAVIHTNLDSFYNVIQPCIMPMIGARQ-GGRIITLSSVSGVMG-----  170 (267)
T ss_dssp             HHHHHCCCSEEEECCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHTS-CEEEEEECCHHHHHC-----
T ss_pred             HHHHhCCccEEEECCCCCCCCccccCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHhcCC-CcEEEEEcchHhccC-----
Confidence                  799999999865421      1223 3788999999999999873     334 579999999776531     


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                                       .++...|+.+|.+.+.+.+.++.+.   +++++.++||.+.++.....     ..........
T Consensus       171 -----------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-----~~~~~~~~~~  228 (267)
T 4iiu_A          171 -----------------NRGQVNYSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMIEME-----ESALKEAMSM  228 (267)
T ss_dssp             -----------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCCC-----HHHHHHHHHT
T ss_pred             -----------------CCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeecCCccccc-----HHHHHHHHhc
Confidence                             1234579999999999998888765   79999999999998754321     1111111111


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                       ...     ..+.+++|+|+++++++....   .|..++++++
T Consensus       229 -~p~-----~~~~~~edva~~~~~L~s~~~~~itG~~i~vdGG  265 (267)
T 4iiu_A          229 -IPM-----KRMGQAEEVAGLASYLMSDIAGYVTRQVISINGG  265 (267)
T ss_dssp             -CTT-----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             -CCC-----CCCcCHHHHHHHHHHHhCCcccCccCCEEEeCCC
Confidence             111     267899999999999997543   2446677664

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=99.91  E-value=2.3e-23  Score=174.73  Aligned_cols=215  Identities=14%  Similarity=0.149  Sum_probs=151.2

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEec-CCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVR-SELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      +|++|||||+|+||++++++|+++|++|++++| +.     +..+.. +.+..   ...++.++.+|+.|++++.++++ 
T Consensus         4 ~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~-----~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~   75 (246)
T 2uvd_A            4 GKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNE-----QKANEVVDEIKK---LGSDAIAVRADVANAEDVTNMVKQ   75 (246)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH-----HHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCH-----HHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHH
Confidence            578999999999999999999999999999999 44     111111 11111   12468899999999998888775 


Q ss_pred             ------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|++||+||.....      ..++ +..+++|+.++.++++++.    +.+ .+++|++||...+...     
T Consensus        76 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~-~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~-----  148 (246)
T 2uvd_A           76 TVDVFGQVDILVNNAGVTKDNLLMRMKEEEW-DTVINTNLKGVFLCTKAVSRFMMRQR-HGRIVNIASVVGVTGN-----  148 (246)
T ss_dssp             HHHHHSCCCEEEECCCCCCCBCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCTHHHHCC-----
T ss_pred             HHHHcCCCCEEEECCCCCCCCChhhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECCHHhcCCC-----
Confidence                  699999999865421      1123 3788999999766666554    455 6799999998765311     


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                       ++...|+.+|.+.+.+.+.++.+.   ++++++++||.+.++.... ......   ...... 
T Consensus       149 -----------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-~~~~~~---~~~~~~-  206 (246)
T 2uvd_A          149 -----------------PGQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMTDV-LDENIK---AEMLKL-  206 (246)
T ss_dssp             -----------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCSSC-CCTTHH---HHHHHT-
T ss_pred             -----------------CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeccccCcchhh-cCHHHH---HHHHhc-
Confidence                             124579999999999998887653   7999999999998874332 111111   111111 


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ...     ..+++.+|+|+++++++..+.   .+..+++++.
T Consensus       207 ~p~-----~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG  243 (246)
T 2uvd_A          207 IPA-----AQFGEAQDIANAVTFFASDQSKYITGQTLNVDGG  243 (246)
T ss_dssp             CTT-----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             CCC-----CCCcCHHHHHHHHHHHcCchhcCCCCCEEEECcC
Confidence            111     268899999999999997543   2445667654

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=99.90  E-value=1.1e-23  Score=178.12  Aligned_cols=227  Identities=14%  Similarity=0.086  Sum_probs=151.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCC-cccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRN-SKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      .+|++|||||+|+||+++++.|+++|++|++++|+.     .. .+.. +.+.+.  ...++.++.+|+.|.+++.++++
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~v~~~~~   75 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD-----AAEIEKVRAGLAAQ--HGVKVLYDGADLSKGEAVRGLVD   75 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC-----HHHHHHHHHHHHHH--HTSCEEEECCCTTSHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCc-----chHHHHHHHHHHhc--cCCcEEEEECCCCCHHHHHHHHH
Confidence            357899999999999999999999999999999987     22 1111 111110  01468889999999998888775


Q ss_pred             -------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCC
Q 020104           82 -------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 -------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                             ++|++||+||.....      ..++ +..+++|+.++.++++++.    +.+ ..++|++||...+..     
T Consensus        76 ~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~-~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~-----  148 (260)
T 1x1t_A           76 NAVRQMGRIDILVNNAGIQHTALIEDFPTEKW-DAILALNLSAVFHGTAAALPHMKKQG-FGRIINIASAHGLVA-----  148 (260)
T ss_dssp             HHHHHHSCCSEEEECCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSC-----
T ss_pred             HHHHhcCCCCEEEECCCCCCCCChhhCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEECcHHhCcC-----
Confidence                   699999999865421      1123 3788999999998888775    344 579999999876531     


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                                       .++...|+.+|.+.+.+++.++.+.   ++++++++||.+.++....................
T Consensus       149 -----------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~  211 (260)
T 1x1t_A          149 -----------------SANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETA  211 (260)
T ss_dssp             -----------------CTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC---------------------
T ss_pred             -----------------CCCCchHHHHHHHHHHHHHHHHHHhccCCEEEEEEeecCccCchHHHhhhhhccccCCchHHH
Confidence                             1224579999999999999988764   79999999999998753321110000000000000


Q ss_pred             Cccc-c-cCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          222 REEY-G-FLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       222 ~~~~-~-~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ...+ . ......+.+.+|+|+++++++..+.   .+..++++++
T Consensus       212 ~~~~~~~~~p~~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdgG  256 (260)
T 1x1t_A          212 ARELLSEKQPSLQFVTPEQLGGTAVFLASDAAAQITGTTVSVDGG  256 (260)
T ss_dssp             ---CHHHHCTTCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             HHHHhhccCCCCCCcCHHHHHHHHHHHhChhhcCCCCCEEEECCC
Confidence            0000 0 0011368899999999999997542   3446677654

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=99.90  E-value=6.7e-23  Score=173.50  Aligned_cols=209  Identities=17%  Similarity=0.136  Sum_probs=151.0

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      +|+||||||+|+||++++++|+++|++|++++|+..     .             ..++.++.+|+.|.+++.++++   
T Consensus         8 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~-----~-------------~~~~~~~~~Dl~~~~~v~~~~~~~~   69 (264)
T 2dtx_A            8 DKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDP-----G-------------EAKYDHIECDVTNPDQVKASIDHIF   69 (264)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCC-----C-------------SCSSEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCcc-----c-------------CCceEEEEecCCCHHHHHHHHHHHH
Confidence            578999999999999999999999999999999872     1             1457889999999998888775   


Q ss_pred             ----CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCCcc
Q 020104           82 ----GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 ----~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                          ++|+|||+||.....      ..++ +..+++|+.++.++++++..    .+ ..++|++||...+..        
T Consensus        70 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~--------  139 (264)
T 2dtx_A           70 KEYGSISVLVNNAGIESYGKIESMSMGEW-RRIIDVNLFGYYYASKFAIPYMIRSR-DPSIVNISSVQASII--------  139 (264)
T ss_dssp             HHHSCCCEEEECCCCCCCBCTTTSCHHHH-HHHHHHHTHHHHHHHHHHHHHHTTSS-SCEEEEECCGGGTSC--------
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEECCchhccC--------
Confidence                699999999865421      1123 37889999998888887764    34 579999999876531        


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcC--CcEEEeccCceeCCCCCCCC------Cc-cHHHHHHHH
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHG--LDLVTLIPSMVVGPFICPKF------AG-SVRSSLALI  218 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~--~~~~ilRp~~v~G~~~~~~~------~~-~~~~~~~~~  218 (331)
                                    .++...|+.+|.+.+.+++.++.+.+  +++++++||.+.++......      .. .........
T Consensus       140 --------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~  205 (264)
T 2dtx_A          140 --------------TKNASAYVTSKHAVIGLTKSIALDYAPLLRCNAVCPATIDTPLVRKAAELEVGSDPMRIEKKISEW  205 (264)
T ss_dssp             --------------CTTBHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCSHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             --------------CCCchhHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCCCcCcchhhhhhcccccCchhhHHHHHHH
Confidence                          12345899999999999999987765  89999999999765311000      00 000000000


Q ss_pred             hCCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          219 LGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       219 ~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      . .....     ..+++++|+|+++++++..+.   .+..+++++.
T Consensus       206 ~-~~~p~-----~~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG  245 (264)
T 2dtx_A          206 G-HEHPM-----QRIGKPQEVASAVAFLASREASFITGTCLYVDGG  245 (264)
T ss_dssp             H-HHSTT-----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             H-hcCCC-----CCCcCHHHHHHHHHHHhCchhcCCCCcEEEECCC
Confidence            0 00111     368999999999999997643   2446667654

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=99.90  E-value=3.8e-23  Score=176.14  Aligned_cols=216  Identities=17%  Similarity=0.096  Sum_probs=151.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+.     +..+.. +.+..   . .++.++.+|+.|.+++.++++ 
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~-----~~~~~~~~~l~~---~-~~~~~~~~Dv~d~~~v~~~~~~   98 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDA-----EACADTATRLSA---Y-GDCQAIPADLSSEAGARRLAQA   98 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCH-----HHHHHHHHHHTT---S-SCEEECCCCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHh---c-CceEEEEeeCCCHHHHHHHHHH
Confidence            457899999999999999999999999999999986     222211 11111   1 268889999999998887765 


Q ss_pred             ------CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHH----hcCCc----cEEEEecccceeecCC
Q 020104           82 ------GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCL----KSGTV----KRVVYTSSNAAVFYND  141 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~----~~~v~~SS~~~~~~~~  141 (331)
                            ++|+|||+||....      ..+++ +..+++|+.++.++++++.    +.+ .    +++|++||...+... 
T Consensus        99 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~~~m~~~~-~~~~~g~iV~isS~~~~~~~-  175 (276)
T 2b4q_A           99 LGELSARLDILVNNAGTSWGAALESYPVSGW-EKVMQLNVTSVFSCIQQLLPLLRRSA-SAENPARVINIGSVAGISAM-  175 (276)
T ss_dssp             HHHHCSCCSEEEECCCCCCCCCTTSCCSHHH-HHHHHHHTHHHHHHHHHHHHHHHHHC-CSSSCEEEEEECCGGGTCCC-
T ss_pred             HHHhcCCCCEEEECCCCCCCCCcccCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhcc-CCCCCCEEEEECCHHHcCCC-
Confidence                  68999999986432      11223 3789999999987777664    334 3    799999998765311 


Q ss_pred             CCCCcccCCCCCChhhhhhcCCCCc-hhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHH
Q 020104          142 KDVDMMDETFWSDVDYIRKLDSWGK-SYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLAL  217 (331)
Q Consensus       142 ~~~~~~~E~~~~~~~~~~~~~~~~~-~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~  217 (331)
                                           +... .|+.+|.+.+.+++.++.+.   ++++++++||.+.++....    ........
T Consensus       176 ---------------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~----~~~~~~~~  230 (276)
T 2b4q_A          176 ---------------------GEQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTRH----IANDPQAL  230 (276)
T ss_dssp             ---------------------CCSCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSTTTHH----HHHCHHHH
T ss_pred             ---------------------CCCccccHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcCcchhh----cchhHHHH
Confidence                                 1123 69999999999999988764   8999999999998774221    00000111


Q ss_pred             HhC-CCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          218 ILG-NREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       218 ~~~-~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ... .....     ..+.+.+|+|+++++++..+.   .+..++++++
T Consensus       231 ~~~~~~~p~-----~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG  273 (276)
T 2b4q_A          231 EADSASIPM-----GRWGRPEEMAALAISLAGTAGAYMTGNVIPIDGG  273 (276)
T ss_dssp             HHHHHTSTT-----SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             HHhhcCCCC-----CCcCCHHHHHHHHHHHhCccccCCCCCEEEeCCC
Confidence            111 01111     268899999999999997642   2445667553

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=99.90  E-value=1.3e-23  Score=180.42  Aligned_cols=220  Identities=13%  Similarity=0.106  Sum_probs=157.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+..    ...+......  .....++.++.+|+.|.+++.++++  
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~----~~~~~~~~~~--~~~~~~~~~~~~Dv~d~~~v~~~~~~~  119 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEE----GDANETKQYV--EKEGVKCVLLPGDLSDEQHCKDIVQET  119 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCH----HHHHHHHHHH--HTTTCCEEEEESCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch----HHHHHHHHHH--HhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence            3578999999999999999999999999999999872    1111111111  1122578899999999998887775  


Q ss_pred             -----CccEEEEecccCCC-------CCCChhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCCCCccc
Q 020104           82 -----GCTGVLHVATPVDF-------EDKEPEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                           ++|++||+|+....       ..+++ +..+++|+.++.++++++...- ...++|++||...+...        
T Consensus       120 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~--------  190 (291)
T 3ijr_A          120 VRQLGSLNILVNNVAQQYPQQGLEYITAEQL-EKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYEGN--------  190 (291)
T ss_dssp             HHHHSSCCEEEECCCCCCCCSSGGGCCHHHH-HHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHHCC--------
T ss_pred             HHHcCCCCEEEECCCCcCCCCCcccCCHHHH-HHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcCCC--------
Confidence                 68999999986432       11223 3789999999999999998752 13599999998776311        


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCccc
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEY  225 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  225 (331)
                                    ++...|+.+|.+.+.+++.++.+.   +++++.++||.++++.......   ..... ........
T Consensus       191 --------------~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~---~~~~~-~~~~~~p~  252 (291)
T 3ijr_A          191 --------------ETLIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPLIPSSFD---EKKVS-QFGSNVPM  252 (291)
T ss_dssp             --------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTHHHHHSC---HHHHH-HTTTTSTT
T ss_pred             --------------CCChhHHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCCCcCCcccccCC---HHHHH-HHHccCCC
Confidence                          224579999999999999988775   8999999999999874211000   00011 11111222


Q ss_pred             ccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          226 GFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       226 ~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                           ..+.+.+|+|+++++++....   .|..++++++
T Consensus       253 -----~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG  286 (291)
T 3ijr_A          253 -----QRPGQPYELAPAYVYLASSDSSYVTGQMIHVNGG  286 (291)
T ss_dssp             -----SSCBCGGGTHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred             -----CCCcCHHHHHHHHHHHhCCccCCCcCCEEEECCC
Confidence                 378899999999999997643   2446677654

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=99.90  E-value=2.4e-23  Score=171.88  Aligned_cols=204  Identities=14%  Similarity=0.032  Sum_probs=150.3

Q ss_pred             CCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            2 EEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         2 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      ...+|++|||||+|+||++++++|+++|++|++++|+.                     .      +|+.|++++.++++
T Consensus         3 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~---------------------~------~D~~~~~~v~~~~~   55 (223)
T 3uce_A            3 GSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQT---------------------G------LDISDEKSVYHYFE   55 (223)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGG---------------------T------CCTTCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCc---------------------c------cCCCCHHHHHHHHH
Confidence            34567899999999999999999999999999999987                     1      89999998888875


Q ss_pred             ---CccEEEEecccCC-C------CCCChhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCCCCcccCC
Q 020104           82 ---GCTGVLHVATPVD-F------EDKEPEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKDVDMMDET  150 (331)
Q Consensus        82 ---~~d~Vih~a~~~~-~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~E~  150 (331)
                         ++|++||+|+... .      ..+++ +..+++|+.++.++++++...- .-.++|++||...+..           
T Consensus        56 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~-~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~-----------  123 (223)
T 3uce_A           56 TIGAFDHLIVTAGSYAPAGKVVDVEVTQA-KYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRKV-----------  123 (223)
T ss_dssp             HHCSEEEEEECCCCCCCCSCTTTSCHHHH-HHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTSC-----------
T ss_pred             HhCCCCEEEECCCCCCCCCCcccCCHHHH-HhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhccC-----------
Confidence               6899999999652 1      11123 3678999999999999998752 0248999999876531           


Q ss_pred             CCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcC-CcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCC
Q 020104          151 FWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHG-LDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLL  229 (331)
Q Consensus       151 ~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (331)
                                 .++...|+.+|.+.+.+.+.++.+.+ ++++.++||.+.++.................. .....    
T Consensus       124 -----------~~~~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~-~~~~~----  187 (223)
T 3uce_A          124 -----------VANTYVKAAINAAIEATTKVLAKELAPIRVNAISPGLTKTEAYKGMNADDRDAMYQRTQ-SHLPV----  187 (223)
T ss_dssp             -----------CTTCHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEECSBCSGGGTTSCHHHHHHHHHHHH-HHSTT----
T ss_pred             -----------CCCchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcchhhhhcchhhHHHHHHHHh-hcCCC----
Confidence                       12345899999999999999998865 99999999999987533221111111111111 11122    


Q ss_pred             CccceeHHHHHHHHHHhhcCCCCCc-eEEEecc
Q 020104          230 NTSMVHVDDVARAHIFLLEYPDAKG-RYICSSH  261 (331)
Q Consensus       230 ~~~~i~v~D~a~~~~~~~~~~~~~~-~~~~~~~  261 (331)
                       ..+.+++|+|+++++++......| .++++++
T Consensus       188 -~~~~~~~dvA~~~~~l~~~~~~tG~~i~vdgG  219 (223)
T 3uce_A          188 -GKVGEASDIAMAYLFAIQNSYMTGTVIDVDGG  219 (223)
T ss_dssp             -CSCBCHHHHHHHHHHHHHCTTCCSCEEEESTT
T ss_pred             -CCccCHHHHHHHHHHHccCCCCCCcEEEecCC
Confidence             267899999999999998665444 5677653

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=99.90  E-value=4.7e-23  Score=176.11  Aligned_cols=224  Identities=15%  Similarity=0.071  Sum_probs=156.3

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|++|||||+|+||++++++|++.|++|++++|+.     +..+....  ++.....++.++.+|+.|.+++.++++  
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~-----~~~~~~~~--~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~   99 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGVTVGALGRTR-----TEVEEVAD--EIVGAGGQAIALEADVSDELQMRNAVRDL   99 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSH-----HHHHHHHH--HHTTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHH--HHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence            457899999999999999999999999999999987     22222111  112223578899999999988887775  


Q ss_pred             -----CccEEEEecccCCC-------CCCChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCCCC
Q 020104           82 -----GCTGVLHVATPVDF-------EDKEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                           ++|++||+||....       ...++ +..+++|+.++.++++++    ++.+ ..++|++||...+....    
T Consensus       100 ~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~Iv~isS~~~~~~~~----  173 (283)
T 3v8b_A          100 VLKFGHLDIVVANAGINGVWAPIDDLKPFEW-DETIAVNLRGTFLTLHLTVPYLKQRG-GGAIVVVSSINGTRTFT----  173 (283)
T ss_dssp             HHHHSCCCEEEECCCCCCCBCCTTTSCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCSBTTTBCC----
T ss_pred             HHHhCCCCEEEECCCCCCCCCchhhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHHcC-CceEEEEcChhhccCCC----
Confidence                 69999999996431       11123 378999999999999988    4555 57999999976542000    


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                      .++...|+.+|.+.+.+++.++.+.   +++++.++||.+..+............     ....
T Consensus       174 ----------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~-----~~~~  232 (283)
T 3v8b_A          174 ----------------TPGATAYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNISDNTKLRHEEE-----TAIP  232 (283)
T ss_dssp             ----------------STTCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECSBSSCTTCCTTBCCHHH-----HSCC
T ss_pred             ----------------CCCchHHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCcCCcccccccccchh-----hhhh
Confidence                            1235589999999999999998874   799999999999887543221111000     0000


Q ss_pred             ccc-c---cCCCccceeHHHHHHHHHHhhcCCC--C-CceEEEecc
Q 020104          223 EEY-G---FLLNTSMVHVDDVARAHIFLLEYPD--A-KGRYICSSH  261 (331)
Q Consensus       223 ~~~-~---~~~~~~~i~v~D~a~~~~~~~~~~~--~-~~~~~~~~~  261 (331)
                      ... .   +.....+...+|+|+++++++....  . |..++++|+
T Consensus       233 ~~~~~~~~p~~~~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG  278 (283)
T 3v8b_A          233 VEWPKGQVPITDGQPGRSEDVAELIRFLVSERARHVTGSPVWIDGG  278 (283)
T ss_dssp             CBCTTCSCGGGTTCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred             hhhhhhcCccccCCCCCHHHHHHHHHHHcCccccCCcCCEEEECcC
Confidence            000 0   0000267899999999999997543  2 445667654

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=99.90  E-value=7.6e-23  Score=173.73  Aligned_cols=218  Identities=16%  Similarity=0.111  Sum_probs=155.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+..    ...+. ...+.+   ...++.++.+|+.|.+++.++++ 
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~----~~~~~~~~~l~~---~~~~~~~~~~Dv~d~~~v~~~~~~  102 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAA----ERAQAVVSEIEQ---AGGRAVAIRADNRDAEAIEQAIRE  102 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCH----HHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCH----HHHHHHHHHHHh---cCCcEEEEECCCCCHHHHHHHHHH
Confidence            4578999999999999999999999999999877651    11111 111111   12578899999999998888775 


Q ss_pred             ------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhc-CCccEEEEecccceeecCCCCCCccc
Q 020104           82 ------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKS-GTVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                            ++|++||+||.....      .+++ +..+++|+.++.++++++... ....++|++||......+        
T Consensus       103 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~-~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~~~--------  173 (271)
T 3v2g_A          103 TVEALGGLDILVNSAGIWHSAPLEETTVADF-DEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAELVP--------  173 (271)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTCCC--------
T ss_pred             HHHHcCCCcEEEECCCCCCCCChhhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhccCC--------
Confidence                  799999999865421      1223 378899999999999998865 114699999996543100        


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCccc
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEY  225 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  225 (331)
                                   .++...|+.+|.+.+.+++.++.+.   +++++.++||.+.++..... ........   ..  ...
T Consensus       174 -------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~-~~~~~~~~---~~--~~~  234 (271)
T 3v2g_A          174 -------------WPGISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDMNPAD-GDHAEAQR---ER--IAT  234 (271)
T ss_dssp             -------------STTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSSSSCSS-CSSHHHHH---HT--CTT
T ss_pred             -------------CCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCCCcCCccccc-chhHHHHH---hc--CCC
Confidence                         1234589999999999999988775   79999999999998854331 11111111   11  112


Q ss_pred             ccCCCccceeHHHHHHHHHHhhcCCC--C-CceEEEecc
Q 020104          226 GFLLNTSMVHVDDVARAHIFLLEYPD--A-KGRYICSSH  261 (331)
Q Consensus       226 ~~~~~~~~i~v~D~a~~~~~~~~~~~--~-~~~~~~~~~  261 (331)
                           ..+...+|+|+++++++....  . |..++++|+
T Consensus       235 -----~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG  268 (271)
T 3v2g_A          235 -----GSYGEPQDIAGLVAWLAGPQGKFVTGASLTIDGG  268 (271)
T ss_dssp             -----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             -----CCCCCHHHHHHHHHHHhCcccCCccCCEEEeCcC
Confidence                 267899999999999997543  2 446677654

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=99.90  E-value=3.4e-23  Score=175.77  Aligned_cols=219  Identities=19%  Similarity=0.129  Sum_probs=152.2

Q ss_pred             CCceEEEecCcc-hhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGGTG-FIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGatG-~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      .+|++|||||+| .||++++++|+++|++|++++|+.     ...+. .+.+.+.  ...++.++.+|+.|.+++.++++
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~-----~~~~~~~~~l~~~--~~~~~~~~~~Dl~~~~~v~~~~~   93 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHE-----RRLGETRDQLADL--GLGRVEAVVCDVTSTEAVDALIT   93 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHTT--CSSCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCH-----HHHHHHHHHHHhc--CCCceEEEEeCCCCHHHHHHHHH
Confidence            357899999998 599999999999999999999987     22222 1222221  12578999999999998888775


Q ss_pred             -------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCCCCC
Q 020104           82 -------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 -------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                             ++|+|||+|+.....      ..++ +..+++|+.++.++++++...    +...++|++||...+..     
T Consensus        94 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~-----  167 (266)
T 3o38_A           94 QTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEW-DRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWRA-----  167 (266)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTCC-----
T ss_pred             HHHHHhCCCcEEEECCCcCCCCCcccCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcCC-----
Confidence                   689999999965421      1123 378899999999999987654    12568999999776521     


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                                       .++...|+.+|.+.+.+++.++.+   .+++++.++||.+.++........   ...... ..
T Consensus       168 -----------------~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~---~~~~~~-~~  226 (266)
T 3o38_A          168 -----------------QHSQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHKFLEKTSSS---ELLDRL-AS  226 (266)
T ss_dssp             -----------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC---------------------
T ss_pred             -----------------CCCCchHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCcccchhhhccCcH---HHHHHH-Hh
Confidence                             123568999999999999998877   489999999999987743221110   000000 01


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCC--C-CceEEEecc
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPD--A-KGRYICSSH  261 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~-~~~~~~~~~  261 (331)
                      ....     ..+.+.+|+|+++++++....  . |..++++++
T Consensus       227 ~~~~-----~r~~~~~dva~~i~~l~s~~~~~~tG~~i~vdgG  264 (266)
T 3o38_A          227 DEAF-----GRAAEPWEVAATIAFLASDYSSYMTGEVVSVSSQ  264 (266)
T ss_dssp             CCTT-----SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESSC
T ss_pred             cCCc-----CCCCCHHHHHHHHHHHcCccccCccCCEEEEcCC
Confidence            1111     378899999999999998643  2 446677653

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=99.90  E-value=8.3e-23  Score=173.34  Aligned_cols=212  Identities=15%  Similarity=0.128  Sum_probs=152.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|+||||||+|+||++++++|+++|++|++++|+..     ..            ...+..+.+|+.|.+++.++++  
T Consensus        13 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~-----~~------------~~~~~~~~~Dv~~~~~v~~~~~~~   75 (269)
T 3vtz_A           13 TDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEK-----SD------------VNVSDHFKIDVTNEEEVKEAVEKT   75 (269)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC-------C------------TTSSEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCch-----hc------------cCceeEEEecCCCHHHHHHHHHHH
Confidence            4689999999999999999999999999999999872     11            1245788999999998888775  


Q ss_pred             -----CccEEEEecccCCCCC---C--ChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCCcc
Q 020104           82 -----GCTGVLHVATPVDFED---K--EPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~~---~--~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                           ++|++||+||......   .  +..+..+++|+.++.++++++..    .+ ..++|++||...+..        
T Consensus        76 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~--------  146 (269)
T 3vtz_A           76 TKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIG-HGSIINIASVQSYAA--------  146 (269)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSB--------
T ss_pred             HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECchhhccC--------
Confidence                 6899999999654221   1  11236788999999988887654    44 579999999877631        


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc--CCcEEEeccCceeCCCCCCC-------CCccHHHHHHHH
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH--GLDLVTLIPSMVVGPFICPK-------FAGSVRSSLALI  218 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~-------~~~~~~~~~~~~  218 (331)
                                    .++...|+.+|.+.+.+++.++.+.  +++++.++||.+.++.....       ............
T Consensus       147 --------------~~~~~~Y~asKaa~~~l~~~la~e~~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~  212 (269)
T 3vtz_A          147 --------------TKNAAAYVTSKHALLGLTRSVAIDYAPKIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEW  212 (269)
T ss_dssp             --------------CTTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCHHHHHHHHHHHCCSTTHHHHHHHHH
T ss_pred             --------------CCCChhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEECCCcCcchhhhhhccccccchhhHHHHHHH
Confidence                          1224589999999999999998876  79999999999987631100       000001111111


Q ss_pred             hCCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          219 LGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       219 ~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      . .....     ..+.+.+|+|+++++++....   .|..++++++
T Consensus       213 ~-~~~p~-----~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG  252 (269)
T 3vtz_A          213 G-RQHPM-----GRIGRPEEVAEVVAFLASDRSSFITGACLTVDGG  252 (269)
T ss_dssp             H-HHSTT-----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             H-hcCCC-----CCCcCHHHHHHHHHHHhCCccCCCcCcEEEECCC
Confidence            0 11111     368899999999999998543   3456778664

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.90  E-value=5.4e-23  Score=175.73  Aligned_cols=225  Identities=16%  Similarity=0.100  Sum_probs=154.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      ++|++|||||+|+||++++++|+++|++|++++|+.     +..+.. ..+........++.++.+|+.|.+++.++++ 
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~   79 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSS-----ERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINS   79 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHH
Confidence            457899999999999999999999999999999986     222221 1111111001268999999999998887765 


Q ss_pred             ------CccEEEEecccCCCCC----------CChhhHHHHHHHHHHHHHHHHHHhcC--CccEEEEecccceeecCCCC
Q 020104           82 ------GCTGVLHVATPVDFED----------KEPEEVITQRAINGTLGILKSCLKSG--TVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~~----------~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~  143 (331)
                            ++|+|||+||......          .++ +..+++|+.++.++++++...-  ...++|++||...+...   
T Consensus        80 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~-~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---  155 (280)
T 1xkq_A           80 TLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIY-HKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQA---  155 (280)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSSC---
T ss_pred             HHHhcCCCCEEEECCCCCCCCCCCcccccCCHHHH-HHHHHHhhHHHHHHHHHHHHHhhcCCCcEEEecCccccCCC---
Confidence                  6899999998653211          123 3788999999999999887531  01699999998765210   


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCC-CccH----HHHH
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKF-AGSV----RSSL  215 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~-~~~~----~~~~  215 (331)
                                        .++...|+.+|.+.+.+++.++.+   +++++++++||.++++...... ....    ....
T Consensus       156 ------------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~  217 (280)
T 1xkq_A          156 ------------------QPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFM  217 (280)
T ss_dssp             ------------------CCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHH
T ss_pred             ------------------CCcccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeCcCcCCcccccccccccccchHHHH
Confidence                              022457999999999999988865   4899999999999987422110 0000    0011


Q ss_pred             HHHhCCCcccccCCCccceeHHHHHHHHHHhhcCC---C-CCceEEEecc
Q 020104          216 ALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYP---D-AKGRYICSSH  261 (331)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~---~-~~~~~~~~~~  261 (331)
                      ... ......     ..+.+.+|+|+++++++..+   . .+..+++++.
T Consensus       218 ~~~-~~~~p~-----~~~~~pedvA~~v~~l~s~~~~~~~tG~~i~vdgG  261 (280)
T 1xkq_A          218 ASH-KECIPI-----GAAGKPEHIANIILFLADRNLSFYILGQSIVADGG  261 (280)
T ss_dssp             HHC-TTTCTT-----SSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTT
T ss_pred             HHH-HcCCCC-----CCCCCHHHHHHHHHHhcCcccccCccCCeEEECCC
Confidence            110 111111     36889999999999998754   2 3446677654

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=99.90  E-value=4.2e-23  Score=175.28  Aligned_cols=208  Identities=18%  Similarity=0.186  Sum_probs=153.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCC---CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHG---YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      ++|+||||||+|+||++++++|+++|   ++|++++|+.     ...+.+..+.+.   ..++.++.+|+.|.+++.+++
T Consensus        20 ~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~-----~~~~~~~~l~~~---~~~~~~~~~Dl~~~~~v~~~~   91 (267)
T 1sny_A           20 HMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNR-----EQAKELEDLAKN---HSNIHILEIDLRNFDAYDKLV   91 (267)
T ss_dssp             CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCT-----TSCHHHHHHHHH---CTTEEEEECCTTCGGGHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecCh-----hhhHHHHHhhcc---CCceEEEEecCCChHHHHHHH
Confidence            46789999999999999999999999   9999999987     333333222211   247899999999999998887


Q ss_pred             c---------CccEEEEecccCC-C------CCCChhhHHHHHHHHHHHHHHHHHHhc----------CC----ccEEEE
Q 020104           81 A---------GCTGVLHVATPVD-F------EDKEPEEVITQRAINGTLGILKSCLKS----------GT----VKRVVY  130 (331)
Q Consensus        81 ~---------~~d~Vih~a~~~~-~------~~~~~~~~~~~~n~~~~~~l~~~~~~~----------~~----~~~~v~  130 (331)
                      +         ++|+|||+|+... .      ...++ +..+++|+.++.++++++...          +.    ..++|+
T Consensus        92 ~~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~  170 (267)
T 1sny_A           92 ADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQEL-LDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIIN  170 (267)
T ss_dssp             HHHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEE
T ss_pred             HHHHHhcCCCCccEEEECCCcCCCccccccCCHHHH-HHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEE
Confidence            6         6999999998654 1      11122 368899999999999988653          10    268999


Q ss_pred             ecccceeecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCC
Q 020104          131 TSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKF  207 (331)
Q Consensus       131 ~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~  207 (331)
                      +||...+....                   ...+...|+.+|.+.+.+++.++.+   .+++++++|||.+..+....  
T Consensus       171 isS~~~~~~~~-------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~--  229 (267)
T 1sny_A          171 MSSILGSIQGN-------------------TDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMGGS--  229 (267)
T ss_dssp             ECCGGGCSTTC-------------------CSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTTCT--
T ss_pred             EecccccccCC-------------------CCCCchHHHHHHHHHHHHHHHHHHHhhcCCcEEEEeCCcceecCCCCC--
Confidence            99987763111                   0123557999999999999998877   48999999999997663210  


Q ss_pred             CccHHHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC--CCceEE-EeccccC
Q 020104          208 AGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKGRYI-CSSHTLT  264 (331)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~-~~~~~~s  264 (331)
                                             ..++..+|+|+.++.++....  ..|.|. ..+..+.
T Consensus       230 -----------------------~~~~~~~~~a~~~~~~~~~~~~~~~G~~~~~~g~~~~  266 (267)
T 1sny_A          230 -----------------------SAPLDVPTSTGQIVQTISKLGEKQNGGFVNYDGTPLA  266 (267)
T ss_dssp             -----------------------TCSBCHHHHHHHHHHHHHHCCGGGTTCEECTTSCBCC
T ss_pred             -----------------------CCCCCHHHHHHHHHHHHHhcCcCCCCcEEccCCcCcC
Confidence                                   134688999999999987542  345443 4554443

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=99.90  E-value=3.2e-23  Score=173.82  Aligned_cols=216  Identities=17%  Similarity=0.154  Sum_probs=154.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+.     +..+....  ++   ..++.++.+|+.|.+++.++++  
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~-----~~~~~~~~--~~---~~~~~~~~~Dv~~~~~v~~~~~~~   74 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGATVIVSDINA-----EGAKAAAA--SI---GKKARAIAADISDPGSVKALFAEI   74 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCH-----HHHHHHHH--HH---CTTEEECCCCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHH--Hh---CCceEEEEcCCCCHHHHHHHHHHH
Confidence            457899999999999999999999999999999986     22222111  11   2578899999999998888775  


Q ss_pred             -----CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHH----HHhcCCccEEEEecccceeecCCCCCCc
Q 020104           82 -----GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKS----CLKSGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~----~~~~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                           ++|++||+|+.....      .+++ +..+++|+.++.+++++    +++.+...++|++||...+..       
T Consensus        75 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~-~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------  146 (247)
T 3rwb_A           75 QALTGGIDILVNNASIVPFVAWDDVDLDHW-RKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFAG-------  146 (247)
T ss_dssp             HHHHSCCSEEEECCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHT-------
T ss_pred             HHHCCCCCEEEECCCCCCCCCcccCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhccC-------
Confidence                 699999999965421      1223 37899999999999887    444432469999999876531       


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE  223 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  223 (331)
                                     .++...|+.+|.+.+.+.+.++.+   ++++++.++||.+.++.................    .
T Consensus       147 ---------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~----~  207 (247)
T 3rwb_A          147 ---------------TPNMAAYVAAKGGVIGFTRALATELGKYNITANAVTPGLIESDGVKASPHNEAFGFVEML----Q  207 (247)
T ss_dssp             ---------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSGGGGGHHHHHHH----S
T ss_pred             ---------------CCCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCccccccChhHHHHHHhcc----c
Confidence                           122458999999999999998877   489999999999987632211111111111110    1


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      .+     ..+...+|+++++.+++....   .|..++++++
T Consensus       208 ~~-----~r~~~pedva~~v~~L~s~~~~~itG~~i~vdGG  243 (247)
T 3rwb_A          208 AM-----KGKGQPEHIADVVSFLASDDARWITGQTLNVDAG  243 (247)
T ss_dssp             SS-----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             cc-----CCCcCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence            11     256789999999999997653   2445677654

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=99.90  E-value=8.4e-23  Score=172.97  Aligned_cols=210  Identities=15%  Similarity=0.121  Sum_probs=150.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+..     ..             .....+.+|+.|.+++.++++  
T Consensus        27 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~-----~~-------------~~~~~~~~Dv~~~~~~~~~~~~~   88 (266)
T 3uxy_A           27 EGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVA-----GI-------------AADLHLPGDLREAAYADGLPGAV   88 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCT-----TS-------------CCSEECCCCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH-----HH-------------HhhhccCcCCCCHHHHHHHHHHH
Confidence            3578999999999999999999999999999999872     11             111345789999987776654  


Q ss_pred             -----CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCCCCc
Q 020104           82 -----GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                           ++|++||+||....      ..+++ +..+++|+.++.++++++    ++.+ ..++|++||...+..       
T Consensus        89 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~~~~-------  159 (266)
T 3uxy_A           89 AAGLGRLDIVVNNAGVISRGRITETTDADW-SLSLGVNVEAPFRICRAAIPLMAAAG-GGAIVNVASCWGLRP-------  159 (266)
T ss_dssp             HHHHSCCCEEEECCCCCCCBCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCSBTTBC-------
T ss_pred             HHhcCCCCEEEECCCCCCCCChhhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECCHHhCCC-------
Confidence                 69999999996542      11223 377889999999999988    4555 579999999776521       


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCC---CccHHHHHHHHhC
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKF---AGSVRSSLALILG  220 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~---~~~~~~~~~~~~~  220 (331)
                                     .++...|+.+|.+.+.+++.++.+.   ++++++++||.+.++......   ............ 
T Consensus       160 ---------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~-  223 (266)
T 3uxy_A          160 ---------------GPGHALYCLTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPMLRTGFAKRGFDPDRAVAELG-  223 (266)
T ss_dssp             ---------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCHHHHHHHHHTTCCHHHHHHHHH-
T ss_pred             ---------------CCCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCCCcchHhhhhhhcccccchHHHHHHH-
Confidence                           1234579999999999999988775   899999999999876311000   000000011111 


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ....+     ..+.+++|+|+++++++..+.   .|..++++++
T Consensus       224 ~~~p~-----~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG  262 (266)
T 3uxy_A          224 RTVPL-----GRIAEPEDIADVVLFLASDAARYLCGSLVEVNGG  262 (266)
T ss_dssp             TTSTT-----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             hcCCC-----CCCcCHHHHHHHHHHHhCchhcCCcCCEEEECcC
Confidence            11112     378899999999999998653   2456777653

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=99.90  E-value=8.2e-23  Score=172.08  Aligned_cols=218  Identities=19%  Similarity=0.115  Sum_probs=156.3

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      +|++|||||+|+||++++++|+++|++|++++|+.     +..+.+..  ++   ..++.++.+|+.|.+++.++++   
T Consensus         8 gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~-----~~~~~~~~--~~---~~~~~~~~~Dv~~~~~v~~~~~~~~   77 (255)
T 4eso_A            8 GKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNE-----SNIARIRE--EF---GPRVHALRSDIADLNEIAVLGAAAG   77 (255)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHH--HH---GGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHH--Hh---CCcceEEEccCCCHHHHHHHHHHHH
Confidence            47899999999999999999999999999999987     22222211  11   1468999999999988887664   


Q ss_pred             ----CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCCCCcccCC
Q 020104           82 ----GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKDVDMMDET  150 (331)
Q Consensus        82 ----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~E~  150 (331)
                          ++|++||+||....      ..+++ +..+++|+.++.++++++...- ...++|++||...+..           
T Consensus        78 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~-~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~-----------  145 (255)
T 4eso_A           78 QTLGAIDLLHINAGVSELEPFDQVSEASY-DRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEGG-----------  145 (255)
T ss_dssp             HHHSSEEEEEECCCCCCCBCGGGCCHHHH-HHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSSB-----------
T ss_pred             HHhCCCCEEEECCCCCCCCChhhCCHHHH-HHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcCC-----------
Confidence                68999999986542      12223 3789999999999999998641 1358999999876531           


Q ss_pred             CCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCC-CCccHH-HHHHHHhCCCccc
Q 020104          151 FWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPK-FAGSVR-SSLALILGNREEY  225 (331)
Q Consensus       151 ~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~-~~~~~~-~~~~~~~~~~~~~  225 (331)
                                 .++...|+.+|.+.+.+.+.++.+.   +++++.++||.+.++..... ...... ....... .....
T Consensus       146 -----------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~-~~~p~  213 (255)
T 4eso_A          146 -----------HPGMSVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKGVAGITEAERAEFKTLGD-NITPM  213 (255)
T ss_dssp             -----------CTTBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEEECSBCCSSTTCTTSCHHHHHHHHHHHH-HHSTT
T ss_pred             -----------CCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEecCcccCcccccccCChhhHHHHHHHHh-ccCCC
Confidence                       1235589999999999999998875   89999999999998854321 111111 1111111 11122


Q ss_pred             ccCCCccceeHHHHHHHHHHhhcCC-C-CCceEEEecc
Q 020104          226 GFLLNTSMVHVDDVARAHIFLLEYP-D-AKGRYICSSH  261 (331)
Q Consensus       226 ~~~~~~~~i~v~D~a~~~~~~~~~~-~-~~~~~~~~~~  261 (331)
                           ..+.+.+|+|+++++++... . .|..++++++
T Consensus       214 -----~r~~~pedvA~~v~~L~s~~~~itG~~i~vdGG  246 (255)
T 4eso_A          214 -----KRNGTADEVARAVLFLAFEATFTTGAKLAVDGG  246 (255)
T ss_dssp             -----SSCBCHHHHHHHHHHHHHTCTTCCSCEEEESTT
T ss_pred             -----CCCcCHHHHHHHHHHHcCcCcCccCCEEEECCC
Confidence                 26789999999999998752 2 2446677653

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=99.90  E-value=1e-22  Score=170.52  Aligned_cols=212  Identities=15%  Similarity=0.143  Sum_probs=152.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHH-CCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLD-HGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|++|||||+|+||++++++|++ .|+.|++++|+..     .            ....+.++.+|+.|.+++.++++ 
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~-----~------------~~~~~~~~~~Dv~~~~~v~~~~~~   65 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQS-----F------------SAENLKFIKADLTKQQDITNVLDI   65 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCC-----C------------CCTTEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEeccccc-----c------------ccccceEEecCcCCHHHHHHHHHH
Confidence            467899999999999999999999 7899999988761     0            11457889999999999988875 


Q ss_pred             ----CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCCCCcccCC
Q 020104           82 ----GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKDVDMMDET  150 (331)
Q Consensus        82 ----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~E~  150 (331)
                          ++|++||+||....      ..+++ +..+++|+.++.++++++...- .-.++|++||...+..           
T Consensus        66 ~~~~~id~lv~nAg~~~~~~~~~~~~~~~-~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~-----------  133 (244)
T 4e4y_A           66 IKNVSFDGIFLNAGILIKGSIFDIDIESI-KKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFIA-----------  133 (244)
T ss_dssp             TTTCCEEEEEECCCCCCCBCTTTSCHHHH-HHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTCC-----------
T ss_pred             HHhCCCCEEEECCccCCCCCcccCCHHHH-HHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHccC-----------
Confidence                78999999996531      11123 3788999999999999988753 0148999999876531           


Q ss_pred             CCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCcc-------HHHHHHHHhC
Q 020104          151 FWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGS-------VRSSLALILG  220 (331)
Q Consensus       151 ~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~-------~~~~~~~~~~  220 (331)
                                 .++...|+.+|.+.+.+++.++.+   ++++++.++||.+.++.........       ........ .
T Consensus       134 -----------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~-~  201 (244)
T 4e4y_A          134 -----------KPNSFAYTLSKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTDLYRNLIQKYANNVGISFDEAQKQE-E  201 (244)
T ss_dssp             -----------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESCBCCHHHHHHHHHHHHHHTCCHHHHHHHH-H
T ss_pred             -----------CCCCchhHHHHHHHHHHHHHHHHHHHHcCeEEEEEecCccCchhhHHHHHhhhhhcCCCHHHHHHHH-h
Confidence                       122457999999999999998874   4899999999999876311100000       00001111 1


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      .....     ..+.+++|+|+++++++..+.   .|..++++++
T Consensus       202 ~~~p~-----~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG  240 (244)
T 4e4y_A          202 KEFPL-----NRIAQPQEIAELVIFLLSDKSKFMTGGLIPIDGG  240 (244)
T ss_dssp             TTSTT-----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             hcCCC-----CCCcCHHHHHHHHHHHhcCccccccCCeEeECCC
Confidence            11111     368899999999999997543   2446677654

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=99.90  E-value=6.4e-23  Score=173.08  Aligned_cols=216  Identities=19%  Similarity=0.190  Sum_probs=152.2

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |...+|++|||||+|+||++++++|+++|++|++++|+.     +.  ....   .   ..++.++.+|+.|.+++.+++
T Consensus         5 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~-----~~--~~~~---~---~~~~~~~~~D~~~~~~v~~~~   71 (257)
T 3tl3_A            5 MEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRG-----ED--VVAD---L---GDRARFAAADVTDEAAVASAL   71 (257)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSC-----HH--HHHH---T---CTTEEEEECCTTCHHHHHHHH
T ss_pred             ceecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCch-----HH--HHHh---c---CCceEEEECCCCCHHHHHHHH
Confidence            444567899999999999999999999999999999965     11  1111   1   257899999999999888877


Q ss_pred             c------CccEEEEecccCC----------CCCCChhhHHHHHHHHHHHHHHHHHHhc-----------CCccEEEEecc
Q 020104           81 A------GCTGVLHVATPVD----------FEDKEPEEVITQRAINGTLGILKSCLKS-----------GTVKRVVYTSS  133 (331)
Q Consensus        81 ~------~~d~Vih~a~~~~----------~~~~~~~~~~~~~n~~~~~~l~~~~~~~-----------~~~~~~v~~SS  133 (331)
                      +      ++|++||+||...          ...+++ +..+++|+.++.++++++...           ....++|++||
T Consensus        72 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS  150 (257)
T 3tl3_A           72 DLAETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAF-RKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTAS  150 (257)
T ss_dssp             HHHHHHSCEEEEEECGGGSHHHHHHHHTCCCSHHHH-HHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECC
T ss_pred             HHHHHhCCCCEEEECCCCCCCcccccccccCCHHHH-HHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcc
Confidence            5      7999999998643          122233 488999999999999988753           11358999999


Q ss_pred             cceeecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCcc
Q 020104          134 NAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGS  210 (331)
Q Consensus       134 ~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~  210 (331)
                      ...+...                      ++...|+.+|.+.+.+++.++.+.   +++++.++||.+.++..... .  
T Consensus       151 ~~~~~~~----------------------~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~-~--  205 (257)
T 3tl3_A          151 VAAFDGQ----------------------IGQAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPLLASL-P--  205 (257)
T ss_dssp             CC--CCH----------------------HHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTC----C--
T ss_pred             hhhcCCC----------------------CCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEEEecCccChhhhhc-c--
Confidence            8765210                      123479999999999999888764   79999999999988753321 1  


Q ss_pred             HHHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCCCCc-eEEEecc
Q 020104          211 VRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDAKG-RYICSSH  261 (331)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~-~~~~~~~  261 (331)
                       .......... ...    ...+.+.+|+|+++++++..+...| .+++++.
T Consensus       206 -~~~~~~~~~~-~~~----~~r~~~p~dva~~v~~l~s~~~itG~~i~vdGG  251 (257)
T 3tl3_A          206 -EEARASLGKQ-VPH----PSRLGNPDEYGALAVHIIENPMLNGEVIRLDGA  251 (257)
T ss_dssp             -HHHHHHHHHT-SSS----SCSCBCHHHHHHHHHHHHHCTTCCSCEEEESTT
T ss_pred             -HHHHHHHHhc-CCC----CCCccCHHHHHHHHHHHhcCCCCCCCEEEECCC
Confidence             1111111111 111    0268899999999999998765555 5667553

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=99.90  E-value=8.3e-23  Score=174.37  Aligned_cols=219  Identities=16%  Similarity=0.123  Sum_probs=155.1

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      +|++|||||+|+||++++++|+++|++|++++|+.     +..+. .+.+..   ...++.++.+|+.|.+++.++++  
T Consensus        24 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~-----~~~~~~~~~l~~---~~~~~~~~~~Dv~d~~~v~~~~~~~   95 (279)
T 3sju_A           24 PQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDA-----KNVSAAVDGLRA---AGHDVDGSSCDVTSTDEVHAAVAAA   95 (279)
T ss_dssp             -CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHT---TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHh---cCCcEEEEECCCCCHHHHHHHHHHH
Confidence            46899999999999999999999999999999986     22222 122221   23578999999999998887765  


Q ss_pred             -----CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHh------cCCccEEEEecccceeecCCCCC
Q 020104           82 -----GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLK------SGTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~------~~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                           ++|+|||+||.....      ..++ +..+++|+.++.++++++..      .+ ..++|++||...+..     
T Consensus        96 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~~~~~~~~~~-~g~iV~isS~~~~~~-----  168 (279)
T 3sju_A           96 VERFGPIGILVNSAGRNGGGETADLDDALW-ADVLDTNLTGVFRVTREVLRAGGMREAG-WGRIVNIASTGGKQG-----  168 (279)
T ss_dssp             HHHHCSCCEEEECCCCCCCSCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHSSHHHHT-CEEEEEECCGGGTSC-----
T ss_pred             HHHcCCCcEEEECCCCCCCCChhhCCHHHH-HHHHHHHhHHHHHHHHHHhchhhHhhcC-CcEEEEECChhhccC-----
Confidence                 689999999865421      1122 36788999999999998754      34 579999999876521     


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCC-------CCccHHHH
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPK-------FAGSVRSS  214 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~-------~~~~~~~~  214 (331)
                                       .++...|+.+|.+.+.+++.++.+   .+++++.++||.+.++.....       ........
T Consensus       169 -----------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~  231 (279)
T 3sju_A          169 -----------------VMYAAPYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVETPMAERVREGYARHWGVTEQEV  231 (279)
T ss_dssp             -----------------CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEESSBCSHHHHHHHHSCCSSSCCCHHHH
T ss_pred             -----------------CCCChhHHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCcccchHHHHHHhhhhhcccCChHHH
Confidence                             122457999999999999998887   479999999999987631100       00001111


Q ss_pred             HHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          215 LALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ..... .....     ..+.+++|+|+++++++....   .|..++++++
T Consensus       232 ~~~~~-~~~p~-----~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG  275 (279)
T 3sju_A          232 HERFN-AKIPL-----GRYSTPEEVAGLVGYLVTDAAASITAQALNVCGG  275 (279)
T ss_dssp             HHHHH-TTCTT-----SSCBCHHHHHHHHHHHTSSGGGGCCSCEEEESTT
T ss_pred             HHHHH-hcCCC-----CCCCCHHHHHHHHHHHhCccccCcCCcEEEECCC
Confidence            11111 11122     368899999999999998653   3456777654

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=99.90  E-value=1.3e-23  Score=178.00  Aligned_cols=220  Identities=15%  Similarity=0.151  Sum_probs=154.8

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      +|++|||||+|+||++++++|+++|++|++++|+.     +..+.. +.+.+   ...++.++.+|+.|.+++.++++  
T Consensus        11 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~   82 (264)
T 3ucx_A           11 DKVVVISGVGPALGTTLARRCAEQGADLVLAARTV-----ERLEDVAKQVTD---TGRRALSVGTDITDDAQVAHLVDET   82 (264)
T ss_dssp             TCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCH-----HHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHHH
Confidence            57899999999999999999999999999999986     222221 11111   13578999999999998888775  


Q ss_pred             -----CccEEEEecccCCC-------CCCChhhHHHHHHHHHHHHHHHHHHhcC--CccEEEEecccceeecCCCCCCcc
Q 020104           82 -----GCTGVLHVATPVDF-------EDKEPEEVITQRAINGTLGILKSCLKSG--TVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                           ++|++||+|+....       ..+++ +..+++|+.++.++++++...-  .-.++|++||...+..        
T Consensus        83 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~-~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~--------  153 (264)
T 3ucx_A           83 MKAYGRVDVVINNAFRVPSMKPFANTTFEHM-RDAIELTVFGALRLIQGFTPALEESKGAVVNVNSMVVRHS--------  153 (264)
T ss_dssp             HHHTSCCSEEEECCCSCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHTHHHHHHHTCEEEEECCGGGGCC--------
T ss_pred             HHHcCCCcEEEECCCCCCCCCCchhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEECcchhccC--------
Confidence                 68999999976421       11223 3789999999999998875431  0259999999876531        


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCC-------ccHHHHHHH
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFA-------GSVRSSLAL  217 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~-------~~~~~~~~~  217 (331)
                                    .++...|+.+|.+.+.+++.++.+   ++++++.++||.++++.......       .........
T Consensus       154 --------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~  219 (264)
T 3ucx_A          154 --------------QAKYGAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIYNA  219 (264)
T ss_dssp             --------------CTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSCBSHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             --------------CCccHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccccHHHHHHhhhhhcCCCHHHHHHH
Confidence                          122457999999999999998877   58999999999998874211000       000001111


Q ss_pred             HhCCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          218 ILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       218 ~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      .. .....     ..+.+.+|+|+++++++....   .|..++++++
T Consensus       220 ~~-~~~p~-----~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG  260 (264)
T 3ucx_A          220 AA-AGSDL-----KRLPTEDEVASAILFMASDLASGITGQALDVNCG  260 (264)
T ss_dssp             HH-TTSSS-----SSCCBHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             Hh-ccCCc-----ccCCCHHHHHHHHHHHcCccccCCCCCEEEECCC
Confidence            11 11111     378899999999999997543   3456777654

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.90  E-value=2.6e-23  Score=178.93  Aligned_cols=234  Identities=16%  Similarity=0.102  Sum_probs=158.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|++|||||+|+||+++++.|+++|++|++++|+.     +..+.. ..+.+......++.++.+|+.|.+++.++++ 
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~-----~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~   99 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNE-----DRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINT   99 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHH
Confidence            457899999999999999999999999999999986     222211 1111111001168899999999998888775 


Q ss_pred             ------CccEEEEecccCCCCC--------CChhhHHHHHHHHHHHHHHHHHHhcC--CccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDFED--------KEPEEVITQRAINGTLGILKSCLKSG--TVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~~--------~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|+|||+||......        .++ +..+++|+.++.++++++...-  .-.++|++||...+...     
T Consensus       100 ~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~~~~~~~~g~IV~isS~~~~~~~-----  173 (297)
T 1xhl_A          100 TLAKFGKIDILVNNAGANLADGTANTDQPVELY-QKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQA-----  173 (297)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSSC-----
T ss_pred             HHHhcCCCCEEEECCCcCcCCCCccccCCHHHH-HHHHhHhhHHHHHHHHHHHHHHHhcCCEEEEEcCchhccCC-----
Confidence                  6899999998643221        123 3789999999999998887541  01699999997765210     


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCC-CccH----HHHHHH
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKF-AGSV----RSSLAL  217 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~-~~~~----~~~~~~  217 (331)
                                      .++...|+.+|.+.+.+.+.++.+   +++++++++||.+.++...... ....    ......
T Consensus       174 ----------------~~~~~~Y~asKaa~~~l~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~  237 (297)
T 1xhl_A          174 ----------------HSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGS  237 (297)
T ss_dssp             ----------------CTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHH
T ss_pred             ----------------CCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcCccccccccccccccchHHHHHH
Confidence                            022457999999999999988865   4899999999999887421110 0000    000110


Q ss_pred             HhCCCcccccCCCccceeHHHHHHHHHHhhcCC---C-CCceEEEecc-ccCHHHHHH
Q 020104          218 ILGNREEYGFLLNTSMVHVDDVARAHIFLLEYP---D-AKGRYICSSH-TLTIQEMAE  270 (331)
Q Consensus       218 ~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~---~-~~~~~~~~~~-~~s~~e~~~  270 (331)
                      . ......     ..+.+.+|+|+++++++..+   . .|..+++++. .+.+.+.+.
T Consensus       238 ~-~~~~p~-----~r~~~pedvA~~v~~l~s~~~~~~itG~~i~vdGG~~~~~~~~~~  289 (297)
T 1xhl_A          238 R-KECIPV-----GHCGKPEEIANIIVFLADRNLSSYIIGQSIVADGGSTLVMGMQTH  289 (297)
T ss_dssp             C-TTTCTT-----SSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGGCCGGGGS
T ss_pred             H-HhcCCC-----CCCcCHHHHHHHHHHHhCCcccCCccCcEEEECCCcccccccccc
Confidence            0 111111     36889999999999999754   2 3456677653 455444433

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=99.90  E-value=1.4e-23  Score=179.02  Aligned_cols=214  Identities=18%  Similarity=0.115  Sum_probs=150.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHH-CCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLD-HGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      .+|+||||||+|+||++++++|++ .|++|++++|+.     ..... ...+...   ..++.++.+|+.|.+++.++++
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~-----~~~~~~~~~l~~~---~~~~~~~~~Dl~~~~~~~~~~~   74 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDV-----TRGQAAVQQLQAE---GLSPRFHQLDIDDLQSIRALRD   74 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSH-----HHHHHHHHHHHHT---TCCCEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCCh-----HHHHHHHHHHHhc---CCeeEEEECCCCCHHHHHHHHH
Confidence            457899999999999999999999 999999999986     22111 1111111   2468899999999998888776


Q ss_pred             -------CccEEEEecccCCCCCC-----ChhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCC------
Q 020104           82 -------GCTGVLHVATPVDFEDK-----EPEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDK------  142 (331)
Q Consensus        82 -------~~d~Vih~a~~~~~~~~-----~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~------  142 (331)
                             ++|+|||+||.......     +..+..+++|+.++.++++++...- ...++|++||...+.....      
T Consensus        75 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~~  154 (276)
T 1wma_A           75 FLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQ  154 (276)
T ss_dssp             HHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHH
T ss_pred             HHHHhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhcccccCChhHH
Confidence                   79999999986542211     1123789999999999999998763 0249999999877642100      


Q ss_pred             ---CCCcccCCCCCChh--h--------hhhcCCCCchhHhhHHHHHHHHHHHHHH-------cCCcEEEeccCceeCCC
Q 020104          143 ---DVDMMDETFWSDVD--Y--------IRKLDSWGKSYAISKTLTERAALEFAEE-------HGLDLVTLIPSMVVGPF  202 (331)
Q Consensus       143 ---~~~~~~E~~~~~~~--~--------~~~~~~~~~~Y~~~K~~~e~~~~~~~~~-------~~~~~~ilRp~~v~G~~  202 (331)
                         ...+++|+++....  +        ......|.+.|+.+|.+.+.+++.++.+       .++++++++||.+.++.
T Consensus       155 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~v~PG~v~t~~  234 (276)
T 1wma_A          155 QKFRSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDM  234 (276)
T ss_dssp             HHHHCSSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTT
T ss_pred             hhccccccchhhhhhhhhhhhhhhcccccccCCCccchhHHHHHHHHHHHHHHHHHhhcccCCCceEEEEecCCccccCc
Confidence               01122232210000  0        0001123478999999999999888765       48999999999998764


Q ss_pred             CCCCCCccHHHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          203 ICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      ...                         ..+.+.+|+|+++++++..+
T Consensus       235 ~~~-------------------------~~~~~~~~~a~~~~~l~~~~  257 (276)
T 1wma_A          235 AGP-------------------------KATKSPEEGAETPVYLALLP  257 (276)
T ss_dssp             TCT-------------------------TCSBCHHHHTHHHHHHHSCC
T ss_pred             CCc-------------------------cccCChhHhhhhHhhhhcCc
Confidence            221                         14689999999999999754

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=99.90  E-value=2e-23  Score=176.18  Aligned_cols=217  Identities=14%  Similarity=0.140  Sum_probs=152.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|+||||||+|+||++++++|+++|++|+++++...    ..... ...+.+   ...++.++.+|+.|.+++.++++ 
T Consensus        12 ~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~   84 (256)
T 3ezl_A           12 SQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNS----PRRVKWLEDQKA---LGFDFYASEGNVGDWDSTKQAFDK   84 (256)
T ss_dssp             -CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTC----SSHHHHHHHHHH---TTCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCH----HHHHHHHHHHHh---cCCeeEEEecCCCCHHHHHHHHHH
Confidence            4678999999999999999999999999999884431    22111 122211   12468899999999988888775 


Q ss_pred             ------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|+|||+||.....      ..++ +..+++|+.++.++++++    ++.+ ..++|++||...+..      
T Consensus        85 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~------  156 (256)
T 3ezl_A           85 VKAEVGEIDVLVNNAGITRDVVFRKMTREDW-QAVIDTNLTSLFNVTKQVIDGMVERG-WGRIINISSVNGQKG------  156 (256)
T ss_dssp             HHHHTCCEEEEEECCCCCCCCCTTTCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCCCGGGS------
T ss_pred             HHHhcCCCCEEEECCCCCCCCchhhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcchhhccC------
Confidence                  689999999865421      1223 378999999988777765    4455 579999999776531      


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                      .++...|+.+|.+.+.+++.++.+   .+++++.++||.+.++.......    ........ .
T Consensus       157 ----------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~----~~~~~~~~-~  215 (256)
T 3ezl_A          157 ----------------QFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAIRP----DVLEKIVA-T  215 (256)
T ss_dssp             ----------------CSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCH----HHHHHHHH-H
T ss_pred             ----------------CCCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEEECcccCccccccCH----HHHHHHHh-c
Confidence                            123568999999999999988876   47999999999998764222111    11111111 1


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ...     ..+.+.+|+|+++++++....   .|..++++++
T Consensus       216 ~~~-----~~~~~~~dva~~~~~l~s~~~~~~tG~~i~vdgG  252 (256)
T 3ezl_A          216 IPV-----RRLGSPDEIGSIVAWLASEESGFSTGADFSLNGG  252 (256)
T ss_dssp             STT-----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             CCC-----CCCcCHHHHHHHHHHHhCCcccCCcCcEEEECCC
Confidence            111     267899999999999987543   2446777654

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=99.90  E-value=1.9e-22  Score=168.28  Aligned_cols=211  Identities=18%  Similarity=0.161  Sum_probs=150.0

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      +|++|||||+|+||++++++|+++|++|++++|+..     .  ..+   ++     ++.++.+|+.| +++.++++   
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~-----~--~~~---~~-----~~~~~~~D~~~-~~~~~~~~~~~   65 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPE-----E--AAQ---SL-----GAVPLPTDLEK-DDPKGLVKRAL   65 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCH-----H--HHH---HH-----TCEEEECCTTT-SCHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH-----H--HHH---hh-----CcEEEecCCch-HHHHHHHHHHH
Confidence            578999999999999999999999999999999872     1  111   11     26788999999 87776653   


Q ss_pred             ----CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCcc
Q 020104           82 ----GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 ----~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                          ++|++||+|+.....      .+++ +..+++|+.++.++++++.    +.+ .+++|++||...+...  .    
T Consensus        66 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~-~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~--~----  137 (239)
T 2ekp_A           66 EALGGLHVLVHAAAVNVRKPALELSYEEW-RRVLYLHLDVAFLLAQAAAPHMAEAG-WGRVLFIGSVTTFTAG--G----  137 (239)
T ss_dssp             HHHTSCCEEEECCCCCCCCCTTTCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSCC--T----
T ss_pred             HHcCCCCEEEECCCCCCCCChhhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECchhhccCC--C----
Confidence                799999999864321      1123 3788999999988888774    445 6799999998766311  0    


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcc
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREE  224 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~  224 (331)
                                    .++...|+.+|.+.+.+.+.++.+.   +++++++|||.+.++..... ... .......... ..
T Consensus       138 --------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-~~~-~~~~~~~~~~-~p  200 (239)
T 2ekp_A          138 --------------PVPIPAYTTAKTALLGLTRALAKEWARLGIRVNLLCPGYVETEFTLPL-RQN-PELYEPITAR-IP  200 (239)
T ss_dssp             --------------TSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHH-HTC-HHHHHHHHTT-CT
T ss_pred             --------------CCCCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCccCchhhcc-ccC-HHHHHHHHhc-CC
Confidence                          1235589999999999999988765   89999999999988742110 000 0111111111 11


Q ss_pred             cccCCCccceeHHHHHHHHHHhhcCCC--C-CceEEEecc
Q 020104          225 YGFLLNTSMVHVDDVARAHIFLLEYPD--A-KGRYICSSH  261 (331)
Q Consensus       225 ~~~~~~~~~i~v~D~a~~~~~~~~~~~--~-~~~~~~~~~  261 (331)
                      .     ..+.+.+|+|+++++++..+.  . +..++++++
T Consensus       201 ~-----~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG  235 (239)
T 2ekp_A          201 M-----GRWARPEEIARVAAVLCGDEAEYLTGQAVAVDGG  235 (239)
T ss_dssp             T-----SSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred             C-----CCCcCHHHHHHHHHHHcCchhcCCCCCEEEECCC
Confidence            1     267899999999999997543  2 345667654

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=99.90  E-value=1.9e-23  Score=177.41  Aligned_cols=216  Identities=16%  Similarity=0.154  Sum_probs=154.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|++|||||+|+||+++++.|+++|++|++++|+.     ...+.. ..+.+   ...++..+.+|+.|.+++.++++ 
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~~Dv~d~~~v~~~~~~   98 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGAMVIGTATTE-----AGAEGIGAAFKQ---AGLEGRGAVLNVNDATAVDALVES   98 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSH-----HHHHHHHHHHHH---HTCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHh---cCCcEEEEEEeCCCHHHHHHHHHH
Confidence            357899999999999999999999999999999986     222221 11111   12467889999999998888775 


Q ss_pred             ------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|++||+||.....      .+++ +..+++|+.++.++++++..    .+ ..++|++||...+..      
T Consensus        99 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~------  170 (270)
T 3ftp_A           99 TLKEFGALNVLVNNAGITQDQLAMRMKDDEW-DAVIDTNLKAVFRLSRAVLRPMMKAR-GGRIVNITSVVGSAG------  170 (270)
T ss_dssp             HHHHHSCCCEEEECCCCCCCBCTTTCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHHC------
T ss_pred             HHHHcCCCCEEEECCCCCCCCCcccCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECchhhCCC------
Confidence                  689999999865421      1223 37889999999999998753    34 469999999776531      


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                      .++...|+.+|.+.+.+++.++.+.   +++++.++||.+.++..... .   ........ ..
T Consensus       171 ----------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~-~---~~~~~~~~-~~  229 (270)
T 3ftp_A          171 ----------------NPGQVNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDTDMTKGL-P---QEQQTALK-TQ  229 (270)
T ss_dssp             ----------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHHS-C---HHHHHHHH-TT
T ss_pred             ----------------CCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCcchhhc-C---HHHHHHHH-hc
Confidence                            1234579999999999999988774   79999999999987632110 0   11111111 11


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ..+     ..+.+.+|+|+++++++....   .|..++++++
T Consensus       230 ~p~-----~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG  266 (270)
T 3ftp_A          230 IPL-----GRLGSPEDIAHAVAFLASPQAGYITGTTLHVNGG  266 (270)
T ss_dssp             CTT-----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             CCC-----CCCCCHHHHHHHHHHHhCCCcCCccCcEEEECCC
Confidence            122     368899999999999996543   3456777654

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=99.90  E-value=3.9e-23  Score=176.00  Aligned_cols=218  Identities=15%  Similarity=0.176  Sum_probs=156.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+.     +..+.+ +.+..   ...++.++.+|+.|.+++.++++ 
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~~Dl~d~~~v~~~~~~  102 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGAQVAVAARHS-----DALQVVADEIAG---VGGKALPIRCDVTQPDQVRGMLDQ  102 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSG-----GGGHHHHHHHHH---TTCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHh---cCCeEEEEEcCCCCHHHHHHHHHH
Confidence            457899999999999999999999999999999987     232222 11111   12468899999999998888875 


Q ss_pred             ------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|++||+||.....      .+++ +..+++|+.++.++++++...    +...++|++||...+....    
T Consensus       103 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~~~----  177 (276)
T 3r1i_A          103 MTGELGGIDIAVCNAGIVSVQAMLDMPLEEF-QRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIINI----  177 (276)
T ss_dssp             HHHHHSCCSEEEECCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCC----
T ss_pred             HHHHcCCCCEEEECCCCCCCCCcccCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhcccCC----
Confidence                  799999999965422      1122 367789999999998887643    2126899999976542110    


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                      +.+...|+.+|.+.+.+++.++.+   .+++++.++||.+.++..... ..    ...... ..
T Consensus       178 ----------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~-~~----~~~~~~-~~  235 (276)
T 3r1i_A          178 ----------------PQQVSHYCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTELVEPL-AD----YHALWE-PK  235 (276)
T ss_dssp             ----------------SSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTTGGG-GG----GHHHHG-GG
T ss_pred             ----------------CCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccccc-hH----HHHHHH-hc
Confidence                            123457999999999999999887   489999999999988753321 11    111111 11


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ..+     ..+.+.+|+|+++++++....   .|..++++++
T Consensus       236 ~p~-----~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG  272 (276)
T 3r1i_A          236 IPL-----GRMGRPEELTGLYLYLASAASSYMTGSDIVIDGG  272 (276)
T ss_dssp             STT-----SSCBCGGGSHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             CCC-----CCCcCHHHHHHHHHHHcCccccCccCcEEEECcC
Confidence            122     267899999999999998543   2446677664

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=99.90  E-value=3.6e-23  Score=174.72  Aligned_cols=219  Identities=16%  Similarity=0.165  Sum_probs=153.0

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCC--ccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRN--SKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      +|++|||||+|+||++++++|+++|++|++++|+.     ..  .+. .+.+..   ...++.++.+|+.|.+++.++++
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~   73 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQ-----QEEQAAETIKLIEA---ADQKAVFVGLDVTDKANFDSAID   73 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGG-----GHHHHHHHHHHHHT---TTCCEEEEECCTTCHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc-----chHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHH
Confidence            57899999999999999999999999999999987     22  111 111211   12468899999999998887775


Q ss_pred             -------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhc----CCc-cEEEEecccceeecCCCC
Q 020104           82 -------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKS----GTV-KRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        82 -------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~-~~~v~~SS~~~~~~~~~~  143 (331)
                             ++|++||+||.....      .+++ +..+++|+.++.++++++...    + . .++|++||...+..    
T Consensus        74 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~-~~~~~~N~~g~~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~----  147 (258)
T 3a28_C           74 EAAEKLGGFDVLVNNAGIAQIKPLLEVTEEDL-KQIYSVNVFSVFFGIQAASRKFDELG-VKGKIINAASIAAIQG----  147 (258)
T ss_dssp             HHHHHHTCCCEEEECCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CCCEEEEECCGGGTSC----
T ss_pred             HHHHHhCCCCEEEECCCCCCCCChhhCCHHHH-HHHHHhccHHHHHHHHHHHHHHHhcC-CCcEEEEECcchhccC----
Confidence                   799999999865421      1123 378999999999998887653    4 5 79999999876521    


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCC-------ccHHH
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFA-------GSVRS  213 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~-------~~~~~  213 (331)
                                        .++...|+.+|.+.+.+++.++.+.   ++++++++||.+.++.......       .....
T Consensus       148 ------------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~  209 (258)
T 3a28_C          148 ------------------FPILSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPGIVGTGMWEQIDAELSKINGKPIGE  209 (258)
T ss_dssp             ------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSHHHHHHHHHHHHHHCCCTTH
T ss_pred             ------------------CCCchhHHHHHHHHHHHHHHHHHHHHhhCeEEEEEECCccCChhhhhhhhhhccccCCchHH
Confidence                              1224579999999999999888764   8999999999997653110000       00000


Q ss_pred             HHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          214 SLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ....... ....     ..+.+.+|+|+++++++..+.   .+..+++++.
T Consensus       210 ~~~~~~~-~~p~-----~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG  254 (258)
T 3a28_C          210 NFKEYSS-SIAL-----GRPSVPEDVAGLVSFLASENSNYVTGQVMLVDGG  254 (258)
T ss_dssp             HHHHHHT-TCTT-----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred             HHHHHHh-cCCC-----CCccCHHHHHHHHHHHhCcccCCCCCCEEEECCC
Confidence            0000110 0111     268899999999999997642   2445667553

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=99.90  E-value=2.8e-23  Score=178.53  Aligned_cols=221  Identities=13%  Similarity=0.068  Sum_probs=155.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+...   ...+.+....+  ....++.++.+|+.|.+++.++++  
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~Dv~d~~~v~~~~~~~  122 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEE---EDAQQVKALIE--ECGRKAVLLPGDLSDESFARSLVHKA  122 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGH---HHHHHHHHHHH--HTTCCEEECCCCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcch---hHHHHHHHHHH--HcCCcEEEEEecCCCHHHHHHHHHHH
Confidence            35789999999999999999999999999999887410   11111111111  112578899999999988887764  


Q ss_pred             -----CccEEEEecccCCC-------CCCChhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCCCCccc
Q 020104           82 -----GCTGVLHVATPVDF-------EDKEPEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                           ++|++||+|+....       ..+++ +..+++|+.++.++++++...- .-.++|++||...+..         
T Consensus       123 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~~---------  192 (294)
T 3r3s_A          123 REALGGLDILALVAGKQTAIPEIKDLTSEQF-QQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQP---------  192 (294)
T ss_dssp             HHHHTCCCEEEECCCCCCCCSSGGGCCHHHH-HHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTSC---------
T ss_pred             HHHcCCCCEEEECCCCcCCCCCcccCCHHHH-HHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhccC---------
Confidence                 68999999996431       11223 3789999999999999998763 1249999999877631         


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCccc
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEY  225 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  225 (331)
                                   .++...|+.+|.+.+.+++.++.+.   +++++.++||.++++.........         .....+
T Consensus       193 -------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~---------~~~~~~  250 (294)
T 3r3s_A          193 -------------SPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQ---------DKIPQF  250 (294)
T ss_dssp             -------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHTTTSCG---------GGSTTT
T ss_pred             -------------CCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCccccccccCCCH---------HHHHHH
Confidence                         1224579999999999999988775   899999999999986311000000         000001


Q ss_pred             ccCC-CccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          226 GFLL-NTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       226 ~~~~-~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      .... ...+.+.+|+|+++++++....   .|..++++++
T Consensus       251 ~~~~p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG  290 (294)
T 3r3s_A          251 GQQTPMKRAGQPAELAPVYVYLASQESSYVTAEVHGVCGG  290 (294)
T ss_dssp             TTTSTTSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             HhcCCCCCCcCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence            1001 1367899999999999997543   3556777653

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=99.90  E-value=3.3e-23  Score=177.38  Aligned_cols=223  Identities=13%  Similarity=0.042  Sum_probs=154.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+..    ...+. .+.+.+   ...++.++.+|+.|.+++.++++ 
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~  100 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANST----ESAEEVVAAIKK---NGSDAACVKANVGVVEDIVRMFEE  100 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH----HHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch----HHHHHHHHHHHH---hCCCeEEEEcCCCCHHHHHHHHHH
Confidence            4578999999999999999999999999999999862    00111 111111   12468899999999988877664 


Q ss_pred             ------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhc--CCccEEEEecccceeecCCCCCCcc
Q 020104           82 ------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKS--GTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                            ++|+|||+||.....      ..++ +..+++|+.++.++++++...  + ..++|++||...+...       
T Consensus       101 ~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~~-~g~iv~isS~~~~~~~-------  171 (283)
T 1g0o_A          101 AVKIFGKLDIVCSNSGVVSFGHVKDVTPEEF-DRVFTINTRGQFFVAREAYKHLEI-GGRLILMGSITGQAKA-------  171 (283)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHSCT-TCEEEEECCGGGTCSS-------
T ss_pred             HHHHcCCCCEEEECCCcCCCCCcccCCHHHH-HHHHHHhhHHHHHHHHHHHHHHhc-CCeEEEEechhhccCC-------
Confidence                  689999999965421      1223 378999999999999999876  4 5799999997654210       


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCC-------CCccHHHHHHH
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPK-------FAGSVRSSLAL  217 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~-------~~~~~~~~~~~  217 (331)
                                    ..+...|+.+|.+.+.+++.++.+.   ++++++++||.+.++.....       ....-......
T Consensus       172 --------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~  237 (283)
T 1g0o_A          172 --------------VPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDE  237 (283)
T ss_dssp             --------------CSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHH
T ss_pred             --------------CCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccchhhhhhhhhccccccccCHHHHHH
Confidence                          1124579999999999999888663   89999999999987631100       00000001111


Q ss_pred             HhC-CCcccccCCCccceeHHHHHHHHHHhhcCCC--C-CceEEEecc
Q 020104          218 ILG-NREEYGFLLNTSMVHVDDVARAHIFLLEYPD--A-KGRYICSSH  261 (331)
Q Consensus       218 ~~~-~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~-~~~~~~~~~  261 (331)
                      ... .....     ..+.+.+|+|+++++++....  . |..++++++
T Consensus       238 ~~~~~~~p~-----~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdgG  280 (283)
T 1g0o_A          238 YAAVQWSPL-----RRVGLPIDIARVVCFLASNDGGWVTGKVIGIDGG  280 (283)
T ss_dssp             HHHHHSCTT-----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             HHhhcCCCC-----CCCcCHHHHHHHHHHHhCccccCcCCCEEEeCCC
Confidence            111 01111     267899999999999997543  2 445666554

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=99.90  E-value=2.2e-22  Score=170.77  Aligned_cols=222  Identities=12%  Similarity=0.042  Sum_probs=157.9

Q ss_pred             CCCceEEEecCcch--hHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            3 EGKGRVCVTGGTGF--IASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         3 ~~~~~ilVtGatG~--iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      ..+|++|||||+|+  ||++++++|+++|++|++++|+.     ...+....+.+... ..++.++.+|+.|.+++.+++
T Consensus         5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~   78 (266)
T 3oig_A            5 LEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGE-----RLEKSVHELAGTLD-RNDSIILPCDVTNDAEIETCF   78 (266)
T ss_dssp             CTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG-----GGHHHHHHHHHTSS-SCCCEEEECCCSSSHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCch-----HHHHHHHHHHHhcC-CCCceEEeCCCCCHHHHHHHH
Confidence            34678999999998  99999999999999999999986     33333333322111 136899999999999888877


Q ss_pred             c-------CccEEEEecccCCC----------CCCChhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCC
Q 020104           81 A-------GCTGVLHVATPVDF----------EDKEPEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDK  142 (331)
Q Consensus        81 ~-------~~d~Vih~a~~~~~----------~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~  142 (331)
                      +       ++|++||+|+....          ...++ ...+++|+.++.++++++...- .-.++|++||...+..   
T Consensus        79 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~---  154 (266)
T 3oig_A           79 ASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGF-LLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGELV---  154 (266)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHH-HHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSC---
T ss_pred             HHHHHHhCCeeEEEEccccccccccccchhhccHHHH-HHHHHHhHHHHHHHHHHHHhhcCCCceEEEEeccccccc---
Confidence            5       68999999986531          11122 3788999999999999998752 1259999999776531   


Q ss_pred             CCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHh
Q 020104          143 DVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALIL  219 (331)
Q Consensus       143 ~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~  219 (331)
                                         .+....|+.+|.+.+.+++.++.+.   +++++.++||.+.++..... .. .........
T Consensus       155 -------------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~-~~-~~~~~~~~~  213 (266)
T 3oig_A          155 -------------------MPNYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGI-SD-FNSILKDIE  213 (266)
T ss_dssp             -------------------CTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTC-TT-HHHHHHHHH
T ss_pred             -------------------CCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccccccccc-cc-hHHHHHHHH
Confidence                               1224579999999999999988765   79999999999988643321 11 111111111


Q ss_pred             CCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          220 GNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       220 ~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      .. ...     ..+.+.+|+|+++++++..+.   .|..++++++
T Consensus       214 ~~-~~~-----~~~~~p~dva~~v~~l~s~~~~~~tG~~i~vdGG  252 (266)
T 3oig_A          214 ER-APL-----RRTTTPEEVGDTAAFLFSDMSRGITGENLHVDSG  252 (266)
T ss_dssp             HH-STT-----SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             hc-CCC-----CCCCCHHHHHHHHHHHcCCchhcCcCCEEEECCC
Confidence            11 111     267899999999999998643   2446677654

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=99.90  E-value=5.9e-23  Score=176.24  Aligned_cols=241  Identities=15%  Similarity=0.097  Sum_probs=159.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccC----Ccccccccc-CCCCCCCcEEEEeCCCCCCccHHH
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHR----NSKDLSFLK-NLPGASERLRIFHADLSHPDGFDA   78 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~D~~~~~~~~~   78 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+.......    ....+.... +......++.++.+|+.|.+++.+
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~   88 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVSR   88 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHHH
Confidence            357899999999999999999999999999999874211100    011111110 111123578999999999998887


Q ss_pred             Hhc-------CccEEEEecccCCCC----CCChhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCCCCc
Q 020104           79 AIA-------GCTGVLHVATPVDFE----DKEPEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        79 ~~~-------~~d~Vih~a~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                      +++       ++|++||+||.....    .+++ +..+++|+.++.++++++...- ...++|++||...+...  ...+
T Consensus        89 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~--~~~~  165 (287)
T 3pxx_A           89 ELANAVAEFGKLDVVVANAGICPLGAHLPVQAF-ADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAA--AQPP  165 (287)
T ss_dssp             HHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHH-HHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHH--HCCC
T ss_pred             HHHHHHHHcCCCCEEEECCCcCcccCcCCHHHH-HHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhcccc--cccc
Confidence            775       799999999975422    2233 4889999999999999998752 13599999998766421  1112


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCC----------CccHHH
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKF----------AGSVRS  213 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~----------~~~~~~  213 (331)
                      ..|..+         .++...|+.+|.+.+.+++.++.+.   +++++.++||.+.++......          ......
T Consensus       166 ~~~~~~---------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~  236 (287)
T 3pxx_A          166 GAGGPQ---------GPGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNSAPMYRQFRPDLEAPSRAD  236 (287)
T ss_dssp             -----C---------HHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESSBSSTTTSSHHHHHHHCTTSSSCCHHH
T ss_pred             cccccC---------CCccchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccccccccccchhhhhccccccchhHH
Confidence            222221         1224579999999999999988875   899999999999988543200          000000


Q ss_pred             HHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          214 SLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ........ ...    ...+.+++|+|+++++++....   .|..++++++
T Consensus       237 ~~~~~~~~-~~~----~~~~~~p~dva~~v~fL~s~~a~~itG~~i~vdGG  282 (287)
T 3pxx_A          237 ALLAFPAM-QAM----PTPYVEASDISNAVCFLASDESRYVTGLQFKVDAG  282 (287)
T ss_dssp             HHHHGGGG-CSS----SCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             HHhhhhhh-ccc----CCCCCCHHHHHhhHheecchhhcCCCCceEeECch
Confidence            00000000 000    0478999999999999997543   2456777654

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=99.90  E-value=1.5e-23  Score=181.34  Aligned_cols=221  Identities=13%  Similarity=0.110  Sum_probs=153.1

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCC-C-CCCCcEEEEeCCCCCCccHHHHhc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNL-P-GASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~-~-~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      +|+||||||+|+||++++++|+++|++|++++|+.     +..... +.+... . ....++.++.+|+.|.+++.++++
T Consensus        18 ~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~   92 (303)
T 1yxm_A           18 GQVAIVTGGATGIGKAIVKELLELGSNVVIASRKL-----ERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVK   92 (303)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHH
Confidence            47899999999999999999999999999999986     222111 111110 0 012578999999999998888775


Q ss_pred             -------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCCCCC
Q 020104           82 -------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 -------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                             ++|+|||+||.....      ..++ +..+++|+.++.++++++...    + ..++|++||.. +. +    
T Consensus        93 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~~~~-~~~iv~isS~~-~~-~----  164 (303)
T 1yxm_A           93 STLDTFGKINFLVNNGGGQFLSPAEHISSKGW-HAVLETNLTGTFYMCKAVYSSWMKEH-GGSIVNIIVPT-KA-G----  164 (303)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHTHHHH-CEEEEEECCCC-TT-C----
T ss_pred             HHHHHcCCCCEEEECCCCCCCCchhhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHHhc-CCeEEEEEeec-cc-C----
Confidence                   599999999854311      1122 367899999999999987652    3 46899999977 31 1    


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                                       .++...|+.+|...+.+.+.++.+.   +++++++|||.++|+................    
T Consensus       165 -----------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~----  223 (303)
T 1yxm_A          165 -----------------FPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEG----  223 (303)
T ss_dssp             -----------------CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTT----
T ss_pred             -----------------CCcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCcccchhhhhccccchHHHHH----
Confidence                             1124579999999999999988875   8999999999999984211111000000000    


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                        .........+++++|+|+++++++....   .+..++++++
T Consensus       224 --~~~~~p~~~~~~~~dvA~~i~~l~~~~~~~~~G~~~~v~gG  264 (303)
T 1yxm_A          224 --SFQKIPAKRIGVPEEVSSVVCFLLSPAASFITGQSVDVDGG  264 (303)
T ss_dssp             --GGGGSTTSSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             --HHhcCcccCCCCHHHHHHHHHHHhCcccccCCCcEEEECCC
Confidence              0000011368899999999999997543   2446677654

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=99.90  E-value=7.5e-23  Score=173.60  Aligned_cols=223  Identities=17%  Similarity=0.159  Sum_probs=153.3

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+.     +..+. .+.+... .....+.++.+|+.|.+++.++++ 
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~-----~~~~~~~~~l~~~-~~~~~~~~~~~D~~~~~~~~~~~~~   82 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGANVLINGRRE-----ENVNETIKEIRAQ-YPDAILQPVVADLGTEQGCQDVIEK   82 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSH-----HHHHHHHHHHHHH-CTTCEEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHhh-CCCceEEEEecCCCCHHHHHHHHHh
Confidence            457899999999999999999999999999999987     22211 1111111 112457889999999998888875 


Q ss_pred             --CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCcccC
Q 020104           82 --GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDMMDE  149 (331)
Q Consensus        82 --~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~E  149 (331)
                        ++|++||+||.....      .+++ +..+++|+.++..+++++.    +.+ ..++|++||...+..          
T Consensus        83 ~g~id~lv~nAg~~~~~~~~~~~~~~~-~~~~~vN~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~----------  150 (267)
T 3t4x_A           83 YPKVDILINNLGIFEPVEYFDIPDEDW-FKLFEVNIMSGVRLTRSYLKKMIERK-EGRVIFIASEAAIMP----------  150 (267)
T ss_dssp             CCCCSEEEECCCCCCCCCGGGSCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHTT-EEEEEEECCGGGTSC----------
T ss_pred             cCCCCEEEECCCCCCCCccccCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhCC-CCEEEEEcchhhccC----------
Confidence              799999999965421      1122 3678999999777766554    445 679999999876521          


Q ss_pred             CCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCC-------CCCccHHHHHH-HH
Q 020104          150 TFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICP-------KFAGSVRSSLA-LI  218 (331)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~-------~~~~~~~~~~~-~~  218 (331)
                                  .++...|+.+|.+.+.+.+.++.+.   +++++.++||.+.++....       ........... ..
T Consensus       151 ------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (267)
T 3t4x_A          151 ------------SQEMAHYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTEGVETMLNSLYPNEQLTIEEAEKRFM  218 (267)
T ss_dssp             ------------CTTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECCBCCHHHHHHHHHSSTTSCCCHHHHHHHHH
T ss_pred             ------------CCcchHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeecCccHHHHHhhcCcccCCCHHHHHHHHh
Confidence                        1235689999999999999998875   6899999999998762110       00000011111 01


Q ss_pred             hCC-C-cccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          219 LGN-R-EEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       219 ~~~-~-~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ... + ..+     ..+.+.+|+|+++++++....   .|..++++++
T Consensus       219 ~~~~~~~~~-----~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG  261 (267)
T 3t4x_A          219 KENRPTSII-----QRLIRPEEIAHLVTFLSSPLSSAINGSALRIDGG  261 (267)
T ss_dssp             HHHCTTCSS-----CSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             hccCCcccc-----cCccCHHHHHHHHHHHcCccccCccCCeEEECCC
Confidence            100 0 111     378999999999999998543   2456777654

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=99.90  E-value=1.8e-22  Score=169.67  Aligned_cols=206  Identities=18%  Similarity=0.150  Sum_probs=148.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      ++|+||||||+|+||++++++|+++|++|++++|+.+     ..             ..+.++.+|+.|++++.++++  
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~-----~~-------------~~~~~~~~Dl~d~~~v~~~~~~~   81 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGE-----PP-------------EGFLAVKCDITDTEQVEQAYKEI   81 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSC-----CC-------------TTSEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH-----hh-------------ccceEEEecCCCHHHHHHHHHHH
Confidence            4578999999999999999999999999999999872     11             236788999999998887765  


Q ss_pred             -----CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCCc
Q 020104           82 -----GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                           ++|+|||+|+....      ..+++. ..+++|+.++.++++++..    .+ ..++|++||...+...      
T Consensus        82 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~-~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~~~~~------  153 (253)
T 2nm0_A           82 EETHGPVEVLIANAGVTKDQLLMRMSEEDFT-SVVETNLTGTFRVVKRANRAMLRAK-KGRVVLISSVVGLLGS------  153 (253)
T ss_dssp             HHHTCSCSEEEEECSCCTTTC---CCTTTTH-HHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECCCCCCCCH------
T ss_pred             HHHcCCCCEEEECCCCCCCCChhhCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEECchhhCCCC------
Confidence                 47999999986432      233454 8899999999999887654    35 5799999997654200      


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE  223 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  223 (331)
                                      ++...|+.+|.+.+.+.+.++.+.   ++++++++||.+.++.........    ...... ..
T Consensus       154 ----------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~----~~~~~~-~~  212 (253)
T 2nm0_A          154 ----------------AGQANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDMTKVLTDEQ----RANIVS-QV  212 (253)
T ss_dssp             ----------------HHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEECSBCC---------C----HHHHHT-TC
T ss_pred             ----------------CCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcCHHH----HHHHHh-cC
Confidence                            113479999999999999988764   799999999999776422100000    011111 11


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCCC--C-CceEEEecc
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYPD--A-KGRYICSSH  261 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~-~~~~~~~~~  261 (331)
                      ..     ..+++.+|+|+++++++..+.  . +..+.+++.
T Consensus       213 p~-----~~~~~p~dvA~~i~~l~s~~~~~~tG~~i~vdGG  248 (253)
T 2nm0_A          213 PL-----GRYARPEEIAATVRFLASDDASYITGAVIPVDGG  248 (253)
T ss_dssp             TT-----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             CC-----CCCcCHHHHHHHHHHHhCccccCCcCcEEEECCc
Confidence            11     268899999999999997643  2 345566553

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=99.90  E-value=8.7e-23  Score=172.99  Aligned_cols=221  Identities=15%  Similarity=0.159  Sum_probs=150.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|++|||||+|+||++++++|+++|++|+++.++..    ...+.+...  +.....++.++.+|+.|.+++.++++  
T Consensus        26 ~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~Dl~~~~~v~~~~~~~   99 (267)
T 3u5t_A           26 TNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKA----AAAEEVAGK--IEAAGGKALTAQADVSDPAAVRRLFATA   99 (267)
T ss_dssp             -CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCS----HHHHHHHHH--HHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCH----HHHHHHHHH--HHhcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence            3578999999999999999999999999998866541    111111111  11112568899999999998888775  


Q ss_pred             -----CccEEEEecccCCCCC---CC--hhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCCCCcccCC
Q 020104           82 -----GCTGVLHVATPVDFED---KE--PEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKDVDMMDET  150 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~~---~~--~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~E~  150 (331)
                           ++|++||+||......   .+  ..+..+++|+.++.++++++...- ...++|++||...+..           
T Consensus       100 ~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~-----------  168 (267)
T 3u5t_A          100 EEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGLL-----------  168 (267)
T ss_dssp             HHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHHC-----------
T ss_pred             HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhccC-----------
Confidence                 6899999998654211   11  123678899999999999887641 1359999999776531           


Q ss_pred             CCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCccccc
Q 020104          151 FWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGF  227 (331)
Q Consensus       151 ~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (331)
                                 .+....|+.+|.+.+.+++.++.+.   +++++.+.||.+..+..........   ..... .....  
T Consensus       169 -----------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~---~~~~~-~~~p~--  231 (267)
T 3u5t_A          169 -----------HPSYGIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATDLFLEGKSDEV---RDRFA-KLAPL--  231 (267)
T ss_dssp             -----------CTTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECCBC-----------C---HHHHH-TSSTT--
T ss_pred             -----------CCCchHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEEECCCcCccccccCCHHH---HHHHH-hcCCC--
Confidence                       1224579999999999999999875   7999999999998764321111000   11111 11112  


Q ss_pred             CCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          228 LLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       228 ~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                         ..+...+|+|+++++++....  ..| .++++|+
T Consensus       232 ---~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG  265 (267)
T 3u5t_A          232 ---ERLGTPQDIAGAVAFLAGPDGAWVNGQVLRANGG  265 (267)
T ss_dssp             ---CSCBCHHHHHHHHHHHHSTTTTTCCSEEEEESSS
T ss_pred             ---CCCcCHHHHHHHHHHHhCccccCccCCEEEeCCC
Confidence               267899999999999997654  234 5667654

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=99.90  E-value=7.2e-23  Score=173.99  Aligned_cols=223  Identities=14%  Similarity=0.099  Sum_probs=154.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+..    ...+. .+.+.+   ...++.++.+|+.|.+++.++++ 
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~   89 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANST----KDAEKVVSEIKA---LGSDAIAIKADIRQVPEIVKLFDQ   89 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCH----HHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCH----HHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHH
Confidence            3578999999999999999999999999999887651    11111 111111   23578999999999998888775 


Q ss_pred             ------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCCCCccc
Q 020104           82 ------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                            ++|++||+||.....      .+++ +..+++|+.++.++++++...- .-.++|++||......+        
T Consensus        90 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~-~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------  160 (270)
T 3is3_A           90 AVAHFGHLDIAVSNSGVVSFGHLKDVTEEEF-DRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKDFS--------  160 (270)
T ss_dssp             HHHHHSCCCEEECCCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTTTCC--------
T ss_pred             HHHHcCCCCEEEECCCCCCCCCcccCCHHHH-HHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhccCC--------
Confidence                  689999999975421      2233 3789999999999999988763 12499999996522100        


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCC----C----CccHHHHHHH
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPK----F----AGSVRSSLAL  217 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~----~----~~~~~~~~~~  217 (331)
                                   .++...|+.+|.+.+.+.+.++.++   +++++.++||.+.++.....    .    ..........
T Consensus       161 -------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~  227 (270)
T 3is3_A          161 -------------VPKHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQM  227 (270)
T ss_dssp             -------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTTHHHHGGGGSTTGGGSCHHHHHHH
T ss_pred             -------------CCCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhhhhccccccccchHHHHHH
Confidence                         1235689999999999999988874   89999999999988742210    0    0000111111


Q ss_pred             HhCCCcccccCCCccceeHHHHHHHHHHhhcCCC--C-CceEEEecc
Q 020104          218 ILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--A-KGRYICSSH  261 (331)
Q Consensus       218 ~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~-~~~~~~~~~  261 (331)
                      .. ....+     ..+.+.+|+|+++++++....  . |..++++++
T Consensus       228 ~~-~~~p~-----~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG  268 (270)
T 3is3_A          228 AA-HASPL-----HRNGWPQDVANVVGFLVSKEGEWVNGKVLTLDGG  268 (270)
T ss_dssp             HH-HHSTT-----CSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred             HH-hcCCC-----CCCCCHHHHHHHHHHHcCCccCCccCcEEEeCCC
Confidence            11 11122     267899999999999997543  2 445667653

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=99.90  E-value=2.2e-23  Score=176.95  Aligned_cols=233  Identities=14%  Similarity=0.086  Sum_probs=152.1

Q ss_pred             CCCC--CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHH
Q 020104            1 MEEG--KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFD   77 (331)
Q Consensus         1 M~~~--~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~   77 (331)
                      |+.|  +|++|||||+|+||++++++|+++|++|++++|+.     +.... ...+.+.. ...++.++.+|+.|++++.
T Consensus         1 M~~m~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~~~l~~~~-~~~~~~~~~~D~~~~~~v~   74 (267)
T 2gdz_A            1 MAHMVNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNL-----EAGVQCKAALHEQF-EPQKTLFIQCDVADQQQLR   74 (267)
T ss_dssp             -CCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHTTTS-CGGGEEEEECCTTSHHHHH
T ss_pred             CCcccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHHhhc-CCCceEEEecCCCCHHHHH
Confidence            5543  36899999999999999999999999999999986     22211 11111110 1246889999999999888


Q ss_pred             HHhc-------CccEEEEecccCCCCCCChhhHHHHHHHHHHHH----HHHHHHhcC--CccEEEEecccceeecCCCCC
Q 020104           78 AAIA-------GCTGVLHVATPVDFEDKEPEEVITQRAINGTLG----ILKSCLKSG--TVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        78 ~~~~-------~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~----l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~  144 (331)
                      ++++       ++|+|||+||...  ..++. ..+++|+.++..    +++.+++.+  ...++|++||...+..     
T Consensus        75 ~~~~~~~~~~g~id~lv~~Ag~~~--~~~~~-~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-----  146 (267)
T 2gdz_A           75 DTFRKVVDHFGRLDILVNNAGVNN--EKNWE-KTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMP-----  146 (267)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCCC--SSSHH-HHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSC-----
T ss_pred             HHHHHHHHHcCCCCEEEECCCCCC--hhhHH-HHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCC-----
Confidence            8765       4799999999753  33555 889999886554    445554432  1469999999876531     


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHH--H---HcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHh
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFA--E---EHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALIL  219 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~--~---~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~  219 (331)
                                       .++...|+.+|.+.+.+++.++  .   ..++++++++||.+.++.... ... ... .....
T Consensus       147 -----------------~~~~~~Y~~sK~a~~~~~~~~ala~e~~~~gi~v~~v~Pg~v~t~~~~~-~~~-~~~-~~~~~  206 (267)
T 2gdz_A          147 -----------------VAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILES-IEK-EEN-MGQYI  206 (267)
T ss_dssp             -----------------CTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHG-GGC-HHH-HGGGG
T ss_pred             -----------------CCCCchHHHHHHHHHHHHHHHHHHHHhccCCcEEEEEecCcCcchhhhc-ccc-ccc-cchhh
Confidence                             1124579999999999988742  2   358999999999998763111 000 000 00000


Q ss_pred             CCCcccc-cCCCccceeHHHHHHHHHHhhcCCCC-CceEEEec-cccCHHH
Q 020104          220 GNREEYG-FLLNTSMVHVDDVARAHIFLLEYPDA-KGRYICSS-HTLTIQE  267 (331)
Q Consensus       220 ~~~~~~~-~~~~~~~i~v~D~a~~~~~~~~~~~~-~~~~~~~~-~~~s~~e  267 (331)
                      .....+. ......+++.+|+|+++++++..+.. +..+++++ +.+++.|
T Consensus       207 ~~~~~~~~~~~~~~~~~~~dvA~~v~~l~s~~~~~G~~~~v~gg~~~~~~~  257 (267)
T 2gdz_A          207 EYKDHIKDMIKYYGILDPPLIANGLITLIEDDALNGAIMKITTSKGIHFQD  257 (267)
T ss_dssp             GGHHHHHHHHHHHCCBCHHHHHHHHHHHHHCTTCSSCEEEEETTTEEEECC
T ss_pred             hHHHHHHHHhccccCCCHHHHHHHHHHHhcCcCCCCcEEEecCCCcccccC
Confidence            0000000 00012578999999999999987654 44677754 5556544

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=99.90  E-value=3.3e-23  Score=177.02  Aligned_cols=209  Identities=18%  Similarity=0.168  Sum_probs=145.0

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      +|+||||||+|+||+++++.|+++|++|++++|+.     ...+.+ ..+... .....+.++.+|+.|.+++.++++  
T Consensus        32 ~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~v~~~~~~~  105 (279)
T 1xg5_A           32 DRLALVTGASGGIGAAVARALVQQGLKVVGCARTV-----GNIEELAAECKSA-GYPGTLIPYRCDLSNEEDILSMFSAI  105 (279)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHHT-TCSSEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCh-----HHHHHHHHHHHhc-CCCceEEEEEecCCCHHHHHHHHHHH
Confidence            46899999999999999999999999999999986     222221 111111 111457889999999998887775  


Q ss_pred             -----CccEEEEecccCCCC------CCChhhHHHHHHHHH----HHHHHHHHHhcCCc--cEEEEecccceeecCCCCC
Q 020104           82 -----GCTGVLHVATPVDFE------DKEPEEVITQRAING----TLGILKSCLKSGTV--KRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~----~~~l~~~~~~~~~~--~~~v~~SS~~~~~~~~~~~  144 (331)
                           ++|+|||+|+.....      ..++ +..+++|+.+    ++.+++.+++.+ .  +++|++||...+..  .  
T Consensus       106 ~~~~g~iD~vi~~Ag~~~~~~~~~~~~~~~-~~~~~~N~~~~~~~~~~~l~~~~~~~-~~~g~iv~isS~~~~~~--~--  179 (279)
T 1xg5_A          106 RSQHSGVDICINNAGLARPDTLLSGSTSGW-KDMFNVNVLALSICTREAYQSMKERN-VDDGHIININSMSGHRV--L--  179 (279)
T ss_dssp             HHHHCCCSEEEECCCCCCCCCTTTCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHTT-CCSCEEEEECCGGGTSC--C--
T ss_pred             HHhCCCCCEEEECCCCCCCCCcccCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhcC-CCCceEEEEcChhhccc--C--
Confidence                 799999999865421      1122 3788999999    777777777766 4  79999999876521  0  


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH-----cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHh
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE-----HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALIL  219 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~-----~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~  219 (331)
                                      +.++...|+.+|.+.+.+++.++.+     .++++++++||.+.++............... . 
T Consensus       180 ----------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~-~-  241 (279)
T 1xg5_A          180 ----------------PLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAA-T-  241 (279)
T ss_dssp             ----------------SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTTCHHHHHH-H-
T ss_pred             ----------------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEecCcccchhhhhhcccChhHHhh-h-
Confidence                            0122457999999999998887764     3699999999999876311000000000000 0 


Q ss_pred             CCCcccccCCCccceeHHHHHHHHHHhhcCCC
Q 020104          220 GNREEYGFLLNTSMVHVDDVARAHIFLLEYPD  251 (331)
Q Consensus       220 ~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~  251 (331)
                              .....+++++|+|+++++++..+.
T Consensus       242 --------~~~~~~~~~~dvA~~i~~l~~~~~  265 (279)
T 1xg5_A          242 --------YEQMKCLKPEDVAEAVIYVLSTPA  265 (279)
T ss_dssp             --------HC---CBCHHHHHHHHHHHHHSCT
T ss_pred             --------cccccCCCHHHHHHHHHHHhcCCc
Confidence                    011257899999999999998654

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=99.90  E-value=5.3e-23  Score=175.17  Aligned_cols=217  Identities=18%  Similarity=0.156  Sum_probs=152.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+.     +..+....  ++   ..++.++.+|+.|.+++.++++  
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~-----~~~~~~~~--~~---~~~~~~~~~Dv~d~~~v~~~~~~~   97 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDG-----DAADAAAT--KI---GCGAAACRVDVSDEQQIIAMVDAC   97 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSH-----HHHHHHHH--HH---CSSCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHH--Hc---CCcceEEEecCCCHHHHHHHHHHH
Confidence            357899999999999999999999999999999986     22222111  11   2467899999999998887765  


Q ss_pred             -----CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCCc
Q 020104           82 -----GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                           ++|++||+||....      ..+++ +..+++|+.++.++++++..    .+ ..++|++||...+..       
T Consensus        98 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~Iv~isS~~~~~~-------  168 (277)
T 3gvc_A           98 VAAFGGVDKLVANAGVVHLASLIDTTVEDF-DRVIAINLRGAWLCTKHAAPRMIERG-GGAIVNLSSLAGQVA-------  168 (277)
T ss_dssp             HHHHSSCCEEEECCCCCCCBCTTTCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTT-CEEEEEECCGGGTSC-------
T ss_pred             HHHcCCCCEEEECCCCCCCCChhhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEcchhhccC-------
Confidence                 68999999986542      11223 37889999999998888754    34 569999999775521       


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCC---CccHHH-HHHHHh
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKF---AGSVRS-SLALIL  219 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~---~~~~~~-~~~~~~  219 (331)
                                     .++...|+.+|.+.+.+++.++.+   +++++++++||.++++......   ...... ......
T Consensus       169 ---------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~  233 (277)
T 3gvc_A          169 ---------------VGGTGAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPMQQTAMAMFDGALGAGGARSMI  233 (277)
T ss_dssp             ---------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTCC------CCHHHHH
T ss_pred             ---------------CCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCccCchHHHhhhcchhhHHHHhhhhhh
Confidence                           123558999999999999988876   4899999999999887311000   000000 000000


Q ss_pred             CCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          220 GNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       220 ~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                        ....     ..+.+.+|+|+++++++....   .|..++++++
T Consensus       234 --~~~~-----~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG  271 (277)
T 3gvc_A          234 --ARLQ-----GRMAAPEEMAGIVVFLLSDDASMITGTTQIADGG  271 (277)
T ss_dssp             --HHHH-----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             --hccc-----cCCCCHHHHHHHHHHHcCCccCCccCcEEEECCc
Confidence              0001     267899999999999997643   2456777654

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=99.90  E-value=4e-23  Score=174.41  Aligned_cols=226  Identities=13%  Similarity=0.073  Sum_probs=144.9

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      ||+||||||+|+||++++++|+++|++|++++|+..     ....               .+.+|+.|.+++.++++   
T Consensus         1 mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~-----~~~~---------------~~~~Dl~~~~~v~~~~~~~~   60 (257)
T 1fjh_A            1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA-----EVIA---------------DLSTAEGRKQAIADVLAKCS   60 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS-----SEEC---------------CTTSHHHHHHHHHHHHTTCT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCch-----hhcc---------------ccccCCCCHHHHHHHHHHhC
Confidence            468999999999999999999999999999999872     1110               16789999999988885   


Q ss_pred             -CccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCC---CCCcccCCCCC
Q 020104           82 -GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDK---DVDMMDETFWS  153 (331)
Q Consensus        82 -~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~---~~~~~~E~~~~  153 (331)
                       ++|+|||+||..... ..+ +..+++|+.++.++++++.    +.+ ..++|++||...+.....   ....+.+.++.
T Consensus        61 ~~id~lv~~Ag~~~~~-~~~-~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~  137 (257)
T 1fjh_A           61 KGMDGLVLCAGLGPQT-KVL-GNVVSVNYFGATELMDAFLPALKKGH-QPAAVVISSVASAHLAFDKNPLALALEAGEEA  137 (257)
T ss_dssp             TCCSEEEECCCCCTTC-SSH-HHHHHHHTHHHHHHHHHHHHHHHTSS-SCEEEEECCGGGGSSCGGGCTTHHHHHHTCHH
T ss_pred             CCCCEEEECCCCCCCc-ccH-HHHHHHhhHHHHHHHHHHHHHHhhcC-CcEEEEECChhhhccccccchhhhhhcccchh
Confidence             459999999975411 234 4899999999999999886    334 579999999887631100   00001111100


Q ss_pred             Chhh-hh--hcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC-Ccccc
Q 020104          154 DVDY-IR--KLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN-REEYG  226 (331)
Q Consensus       154 ~~~~-~~--~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~~  226 (331)
                      .... ..  ...++...|+.+|.+.+.+++.++.+   .++++++++||.+.++.........   ........ .... 
T Consensus       138 ~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~---~~~~~~~~~~~~~-  213 (257)
T 1fjh_A          138 KARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDP---RYGESIAKFVPPM-  213 (257)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC------------------------CCCST-
T ss_pred             hhhhhhhcccCCCCccHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCccchhhccch---hHHHHHHhccccc-
Confidence            0000 00  01123568999999999999988766   4899999999999887533210000   00000000 1111 


Q ss_pred             cCCCccceeHHHHHHHHHHhhcCCC--C-CceEEEecc
Q 020104          227 FLLNTSMVHVDDVARAHIFLLEYPD--A-KGRYICSSH  261 (331)
Q Consensus       227 ~~~~~~~i~v~D~a~~~~~~~~~~~--~-~~~~~~~~~  261 (331)
                          ..+++++|+|+++++++..+.  . |..++++++
T Consensus       214 ----~~~~~~~dvA~~~~~l~~~~~~~~tG~~~~vdgG  247 (257)
T 1fjh_A          214 ----GRRAEPSEMASVIAFLMSPAASYVHGAQIVIDGG  247 (257)
T ss_dssp             ----TSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred             ----CCCCCHHHHHHHHHHHhCchhcCCcCCEEEECCC
Confidence                257899999999999997652  3 445667654

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=99.90  E-value=1.4e-22  Score=170.97  Aligned_cols=220  Identities=17%  Similarity=0.172  Sum_probs=151.2

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      +|++|||||+|+||++++++|+++|++|++++|+.     +..+.. +.+..   ...++.++.+|+.|.+++.++++  
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~v~~~~~~~   73 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYND-----ATAKAVASEINQ---AGGHAVAVKVDVSDRDQVFAAVEQA   73 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHh---cCCcEEEEEecCCCHHHHHHHHHHH
Confidence            57899999999999999999999999999999986     222211 11111   12468899999999998888775  


Q ss_pred             -----CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCCCCCCc
Q 020104           82 -----GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                           ++|+|||+||.....      ..++ +..+++|+.++.++++++...    +...++|++||...+..       
T Consensus        74 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~-~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------  145 (256)
T 1geg_A           74 RKTLGGFDVIVNNAGVAPSTPIESITPEIV-DKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVG-------  145 (256)
T ss_dssp             HHHTTCCCEEEECCCCCCCBCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSC-------
T ss_pred             HHHhCCCCEEEECCCCCCCCChhhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcCC-------
Confidence                 799999999864321      1122 368899999998888776643    21369999999765521       


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCc--c-----HHHHHH
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAG--S-----VRSSLA  216 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~--~-----~~~~~~  216 (331)
                                     .++...|+.+|.+.+.+++.++.+   +++++++++||.+.++........  .     ......
T Consensus       146 ---------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~  210 (256)
T 1geg_A          146 ---------------NPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTA  210 (256)
T ss_dssp             ---------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred             ---------------CCCchhHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCCccchhhhhhhhccccccCChHHHHH
Confidence                           122457999999999999988876   389999999999987631100000  0     000000


Q ss_pred             HHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          217 LILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       217 ~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      .... ....     ..+.+.+|+|+++++++..+.   .+..+.+++.
T Consensus       211 ~~~~-~~p~-----~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG  252 (256)
T 1geg_A          211 EFAK-RITL-----GRLSEPEDVAACVSYLASPDSDYMTGQSLLIDGG  252 (256)
T ss_dssp             HHHT-TCTT-----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred             HHHh-cCCC-----CCCcCHHHHHHHHHHHhCccccCCCCCEEEeCCC
Confidence            0111 0111     268899999999999997642   2445666553

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=99.90  E-value=4.5e-23  Score=174.78  Aligned_cols=223  Identities=16%  Similarity=0.062  Sum_probs=154.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+.     +..+.. ..+... ....++.++.+|+.|.+++.++++ 
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~-----~~~~~~~~~l~~~-~~~~~~~~~~~Dv~~~~~v~~~~~~   80 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDG-----ERLRAAESALRQR-FPGARLFASVCDVLDALQVRAFAEA   80 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHHH-STTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHHh-cCCceEEEEeCCCCCHHHHHHHHHH
Confidence            457899999999999999999999999999999987     222221 111110 011358899999999988887764 


Q ss_pred             ------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|++||+||.....      .+++ +..+++|+.++.++++++..    .+ ..++|++||...+..      
T Consensus        81 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~-~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~------  152 (265)
T 3lf2_A           81 CERTLGCASILVNNAGQGRVSTFAETTDEAW-SEELQLKFFSVIHPVRAFLPQLESRA-DAAIVCVNSLLASQP------  152 (265)
T ss_dssp             HHHHHCSCSEEEECCCCCCCBCTTTCCHHHH-HHHHHHHHHHHHHHHHHHHHHHTTST-TEEEEEEEEGGGTSC------
T ss_pred             HHHHcCCCCEEEECCCCCCCCCcccCCHHHH-HHHHHHHHHHHHHHHHHHHHHhhccC-CeEEEEECCcccCCC------
Confidence                  689999999864421      1123 37899999999999998854    33 468999999776521      


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCC------ccHHHHHH
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFA------GSVRSSLA  216 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~------~~~~~~~~  216 (331)
                                      .+....|+.+|.+.+.+++.++.+.   +++++.++||.+.++.......      ........
T Consensus       153 ----------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~  216 (265)
T 3lf2_A          153 ----------------EPHMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWRRRFEAREERELDWAQWTA  216 (265)
T ss_dssp             ----------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTC------CHHHHHH
T ss_pred             ----------------CCCchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCcCchhhhhhhhhhhhccCHHHHHH
Confidence                            1224589999999999999988775   7999999999998763111000      00011111


Q ss_pred             HHh-CCCcccccCCCccceeHHHHHHHHHHhhcCCC--C-CceEEEecc
Q 020104          217 LIL-GNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--A-KGRYICSSH  261 (331)
Q Consensus       217 ~~~-~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~-~~~~~~~~~  261 (331)
                      ... ....+.     ..+...+|+|+++++++....  . |..++++++
T Consensus       217 ~~~~~~~~p~-----~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG  260 (265)
T 3lf2_A          217 QLARNKQIPL-----GRLGKPIEAARAILFLASPLSAYTTGSHIDVSGG  260 (265)
T ss_dssp             HHHHHTTCTT-----CSCBCHHHHHHHHHHHHSGGGTTCCSEEEEESSS
T ss_pred             HHhhccCCCc-----CCCcCHHHHHHHHHHHhCchhcCcCCCEEEECCC
Confidence            111 111222     268899999999999997543  3 445667654

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=99.90  E-value=1.5e-22  Score=172.50  Aligned_cols=222  Identities=13%  Similarity=0.064  Sum_probs=155.4

Q ss_pred             CC-CCCceEEEecCc--chhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHH
Q 020104            1 ME-EGKGRVCVTGGT--GFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFD   77 (331)
Q Consensus         1 M~-~~~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~   77 (331)
                      |. ..+|++|||||+  |+||+++++.|+++|++|++++|+.     ...+.+..+.+..   .++.++.+|+.|.+++.
T Consensus         1 M~~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~-----~~~~~~~~l~~~~---~~~~~~~~D~~~~~~v~   72 (275)
T 2pd4_A            1 MGFLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE-----SLEKRVRPIAQEL---NSPYVYELDVSKEEHFK   72 (275)
T ss_dssp             -CTTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST-----TTHHHHHHHHHHT---TCCCEEECCTTCHHHHH
T ss_pred             CCCCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHhc---CCcEEEEcCCCCHHHHH
Confidence            54 335789999999  9999999999999999999999987     3222222222111   23678999999999888


Q ss_pred             HHhc-------CccEEEEecccCCC----------CCCChhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeec
Q 020104           78 AAIA-------GCTGVLHVATPVDF----------EDKEPEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFY  139 (331)
Q Consensus        78 ~~~~-------~~d~Vih~a~~~~~----------~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~  139 (331)
                      ++++       ++|++||+||....          ...++ +..+++|+.++.++++++...- .-.++|++||...+..
T Consensus        73 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~  151 (275)
T 2pd4_A           73 SLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAF-NTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKY  151 (275)
T ss_dssp             HHHHHHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHH-HHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSB
T ss_pred             HHHHHHHHHcCCCCEEEECCccCccccCCCCcccCCHHHH-HHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhcCC
Confidence            7765       68999999986532          11123 3788999999999999998751 0259999999765421


Q ss_pred             CCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHH
Q 020104          140 NDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLA  216 (331)
Q Consensus       140 ~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~  216 (331)
                                            .++...|+.+|.+.+.+++.++.+.   +++++.++||.+.++.... .. .......
T Consensus       152 ----------------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~-~~-~~~~~~~  207 (275)
T 2pd4_A          152 ----------------------MAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSG-IA-DFRMILK  207 (275)
T ss_dssp             ----------------------CTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGG-ST-THHHHHH
T ss_pred             ----------------------CCCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccchhhh-cc-ccHHHHH
Confidence                                  1224579999999999999988775   8999999999999875322 11 1111111


Q ss_pred             HHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          217 LILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       217 ~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ..... ..+     ..+.+.+|+|+++++++....   .+..+++.+.
T Consensus       208 ~~~~~-~p~-----~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdgg  249 (275)
T 2pd4_A          208 WNEIN-APL-----RKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDAG  249 (275)
T ss_dssp             HHHHH-STT-----SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             HHHhc-CCc-----CCCCCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence            11111 111     156789999999999997532   2445667654

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=99.90  E-value=4.4e-23  Score=174.86  Aligned_cols=220  Identities=15%  Similarity=0.091  Sum_probs=154.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|++|||||+|+||+++++.|+++|++|++++|+.     +..+.. +.+.+.  ...++.++.+|+.|.+++.++++ 
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~-----~~~~~~~~~l~~~--~~~~~~~~~~Dv~~~~~v~~~~~~   91 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGARLVLSGRDV-----SELDAARRALGEQ--FGTDVHTVAIDLAEPDAPAELARR   91 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHHH--HCCCEEEEECCTTSTTHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHHh--cCCcEEEEEecCCCHHHHHHHHHH
Confidence            457899999999999999999999999999999986     222221 111110  12578999999999998887765 


Q ss_pred             ------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|++||+||.....      .+++ +..+++|+.++.++++++...    +...++|++||...+..      
T Consensus        92 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~------  164 (266)
T 4egf_A           92 AAEAFGGLDVLVNNAGISHPQPVVDTDPQLF-DATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALAP------  164 (266)
T ss_dssp             HHHHHTSCSEEEEECCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSC------
T ss_pred             HHHHcCCCCEEEECCCcCCCCChhhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhccC------
Confidence                  799999999865421      1123 378899999999998887543    21359999999876531      


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                      .++...|+.+|.+.+.+.+.++.+.   +++++.++||.+.++....... . ........ ..
T Consensus       165 ----------------~~~~~~Y~asK~a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~-~-~~~~~~~~-~~  225 (266)
T 4egf_A          165 ----------------LPDHYAYCTSKAGLVMATKVLARELGPHGIRANSVCPTVVLTEMGQRVWG-D-EAKSAPMI-AR  225 (266)
T ss_dssp             ----------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBCSHHHHHHTC-S-HHHHHHHH-TT
T ss_pred             ----------------CCCChHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCchhhhhcc-C-hHHHHHHH-hc
Confidence                            1224579999999999999988774   7999999999998763211000 0 01111111 11


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ..+     ..+.+.+|+|+++++++....   .|..+++++.
T Consensus       226 ~p~-----~r~~~p~dva~~v~~L~s~~~~~itG~~i~vdGG  262 (266)
T 4egf_A          226 IPL-----GRFAVPHEVSDAVVWLASDAASMINGVDIPVDGG  262 (266)
T ss_dssp             CTT-----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             CCC-----CCCcCHHHHHHHHHHHhCchhcCccCcEEEECCC
Confidence            122     267899999999999997643   2446777653

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=99.90  E-value=2.2e-22  Score=168.69  Aligned_cols=206  Identities=17%  Similarity=0.126  Sum_probs=146.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|+||||||+|+||++++++|+++|++|++++|+..     ..+             .+..+.+|+.|++++.++++  
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~-----~~~-------------~~~~~~~D~~~~~~~~~~~~~~   75 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSG-----APK-------------GLFGVEVDVTDSDAVDRAFTAV   75 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSC-----CCT-------------TSEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH-----HHH-------------HhcCeeccCCCHHHHHHHHHHH
Confidence            3578999999999999999999999999999999872     211             11237899999988887764  


Q ss_pred             -----CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCCc
Q 020104           82 -----GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                           ++|++||+|+....      ..+++ +..+++|+.++.++++++..    .+ ..++|++||...+...      
T Consensus        76 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~~------  147 (247)
T 1uzm_A           76 EEHQGPVEVLVSNAGLSADAFLMRMTEEKF-EKVINANLTGAFRVAQRASRSMQRNK-FGRMIFIGSVSGLWGI------  147 (247)
T ss_dssp             HHHHSSCSEEEEECSCCC-----CCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCCCC----------
T ss_pred             HHHcCCCCEEEECCCCCCCCChhhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhCC-CCEEEEECCHhhccCC------
Confidence                 58999999986542      11223 37889999999999987754    44 5799999997655311      


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE  223 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  223 (331)
                                      ++...|+.+|.+.+.+.+.++.+   +++++++++||.+.++.... ..   ......... ..
T Consensus       148 ----------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~-~~---~~~~~~~~~-~~  206 (247)
T 1uzm_A          148 ----------------GNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRA-LD---ERIQQGALQ-FI  206 (247)
T ss_dssp             -----------------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHH-SC---HHHHHHHGG-GC
T ss_pred             ----------------CCChhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCCcccchhh-cC---HHHHHHHHh-cC
Confidence                            12457999999999999988876   38999999999997653111 00   011111111 11


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ..     ..+++.+|+|+++++++..+.   .+..++++++
T Consensus       207 p~-----~~~~~~~dvA~~~~~l~s~~~~~~~G~~i~vdgG  242 (247)
T 1uzm_A          207 PA-----KRVGTPAEVAGVVSFLASEDASYISGAVIPVDGG  242 (247)
T ss_dssp             TT-----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             CC-----CCCcCHHHHHHHHHHHcCccccCCcCCEEEECCC
Confidence            11     268899999999999997543   2445677654

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=99.89  E-value=2.3e-22  Score=172.15  Aligned_cols=210  Identities=20%  Similarity=0.221  Sum_probs=148.5

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccccc-ccCCCCCCCcEEEEeCCCCCCccHHHH
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSF-LKNLPGASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      |+..+|++|||||+|+||++++++|+++|++|++++|+..+..... ..+.. ..++.....++.++.+|+.|.+++.++
T Consensus         5 m~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~   83 (285)
T 3sc4_A            5 MSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLP-GTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAA   83 (285)
T ss_dssp             -CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSC-CCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhh-HHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHH
Confidence            4555689999999999999999999999999999999873111000 00100 011111125789999999999988887


Q ss_pred             hc-------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCCC
Q 020104           80 IA-------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYNDK  142 (331)
Q Consensus        80 ~~-------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~  142 (331)
                      ++       ++|++||+||.....      .+++ +..+++|+.++.++++++...    + ..++|++||...+...  
T Consensus        84 ~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~~~~~--  159 (285)
T 3sc4_A           84 VAKTVEQFGGIDICVNNASAINLGSIEEVPLKRF-DLMNGIQVRGTYAVSQSCIPHMKGRD-NPHILTLSPPIRLEPK--  159 (285)
T ss_dssp             HHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHH-HHHHHHHHHHHHHHHHHHGGGTTTSS-SCEEEECCCCCCCSGG--
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECChhhccCC--
Confidence            75       799999999965421      1122 367889999999999988754    3 5699999997654210  


Q ss_pred             CCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCc-eeCCCCCCCCCccHHHHHHHH
Q 020104          143 DVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSM-VVGPFICPKFAGSVRSSLALI  218 (331)
Q Consensus       143 ~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~-v~G~~~~~~~~~~~~~~~~~~  218 (331)
                                         .++...|+.+|.+.+.+++.++.+   .+++++.++||. +-.+            .....
T Consensus       160 -------------------~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~~v~t~------------~~~~~  208 (285)
T 3sc4_A          160 -------------------WLRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTVATA------------AVQNL  208 (285)
T ss_dssp             -------------------GSCSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSSCBCCH------------HHHHH
T ss_pred             -------------------CCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCCccccH------------HHHhh
Confidence                               022457999999999999999887   489999999984 3222            11111


Q ss_pred             hCCCcccccCCCccceeHHHHHHHHHHhhcCCC
Q 020104          219 LGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD  251 (331)
Q Consensus       219 ~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~  251 (331)
                      .......     ..+...+|+|+++++++..+.
T Consensus       209 ~~~~~~~-----~r~~~pedvA~~~~~l~s~~~  236 (285)
T 3sc4_A          209 LGGDEAM-----ARSRKPEVYADAAYVVLNKPS  236 (285)
T ss_dssp             HTSCCCC-----TTCBCTHHHHHHHHHHHTSCT
T ss_pred             ccccccc-----cCCCCHHHHHHHHHHHhCCcc
Confidence            2222222     267789999999999998764

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.4e-22  Score=173.37  Aligned_cols=216  Identities=14%  Similarity=0.164  Sum_probs=152.8

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC---eEEEEecCCCCcccCCccccc-cccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY---SVTTTVRSELDPEHRNSKDLS-FLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      +|++|||||+|+||+++++.|++.|+   +|++++|+.     +..+.+. .+... ....++.++.+|+.|.+++.+++
T Consensus        33 ~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~-----~~~~~~~~~l~~~-~~~~~~~~~~~Dv~d~~~v~~~~  106 (287)
T 3rku_A           33 KKTVLITGASAGIGKATALEYLEASNGDMKLILAARRL-----EKLEELKKTIDQE-FPNAKVHVAQLDITQAEKIKPFI  106 (287)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCH-----HHHHHHHHHHHHH-CTTCEEEEEECCTTCGGGHHHHH
T ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCH-----HHHHHHHHHHHhh-CCCCeEEEEECCCCCHHHHHHHH
Confidence            57899999999999999999999987   999999987     2222221 11110 01246889999999999999887


Q ss_pred             c-------CccEEEEecccCC-C------CCCChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCC
Q 020104           81 A-------GCTGVLHVATPVD-F------EDKEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDK  142 (331)
Q Consensus        81 ~-------~~d~Vih~a~~~~-~------~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~  142 (331)
                      +       ++|++||+||... .      ..+++ +..+++|+.++.++++++    ++.+ ..++|++||...+..   
T Consensus       107 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~IV~isS~~~~~~---  181 (287)
T 3rku_A          107 ENLPQEFKDIDILVNNAGKALGSDRVGQIATEDI-QDVFDTNVTALINITQAVLPIFQAKN-SGDIVNLGSIAGRDA---  181 (287)
T ss_dssp             HTSCGGGCSCCEEEECCCCCCCCCCTTSCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTSC---
T ss_pred             HHHHHhcCCCCEEEECCCcCCCCCCcccCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcC-CCeEEEECChhhcCC---
Confidence            5       5899999999643 1      11223 378999999999999987    3445 579999999776521   


Q ss_pred             CCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHh
Q 020104          143 DVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALIL  219 (331)
Q Consensus       143 ~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~  219 (331)
                                         .+....|+.+|.+.+.+.+.++.+   .+++++.++||.+.++..................
T Consensus       182 -------------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~  242 (287)
T 3rku_A          182 -------------------YPTGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETEFSLVRYRGNEEQAKNVYK  242 (287)
T ss_dssp             -------------------CTTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEESCEESSHHHHHTTTCHHHHHHHHT
T ss_pred             -------------------CCCCchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEeCCcCcCccccccccCcHHHHHHhhc
Confidence                               122457999999999999999987   4899999999999876311000000001111111


Q ss_pred             CCCcccccCCCccceeHHHHHHHHHHhhcCCCC---CceEEEec
Q 020104          220 GNREEYGFLLNTSMVHVDDVARAHIFLLEYPDA---KGRYICSS  260 (331)
Q Consensus       220 ~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~---~~~~~~~~  260 (331)
                      .          ...+..+|+|+++++++..+..   ++.+++.+
T Consensus       243 ~----------~~p~~pedvA~~v~~l~s~~~~~i~g~~i~v~~  276 (287)
T 3rku_A          243 D----------TTPLMADDVADLIVYATSRKQNTVIADTLIFPT  276 (287)
T ss_dssp             T----------SCCEEHHHHHHHHHHHHTSCTTEEEEEEEEEET
T ss_pred             c----------cCCCCHHHHHHHHHHHhCCCCCeEecceEEeeC
Confidence            1          1345899999999999987653   44566554

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=99.89  E-value=2.9e-23  Score=176.64  Aligned_cols=198  Identities=15%  Similarity=0.096  Sum_probs=146.3

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      ..+|+||||||+|+||++++++|+++|++|++++|+.     ...+.+ +.+.+.   ..++.++.+|+.|.+++.++++
T Consensus        29 l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~-----~~~~~~~~~l~~~---~~~~~~~~~Dl~~~~~v~~~~~  100 (272)
T 1yb1_A           29 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK-----HGLEETAAKCKGL---GAKVHTFVVDCSNREDIYSSAK  100 (272)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHHT---TCCEEEEECCTTCHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCH-----HHHHHHHHHHHhc---CCeEEEEEeeCCCHHHHHHHHH
Confidence            3457899999999999999999999999999999986     222211 111111   2468999999999988887765


Q ss_pred             -------CccEEEEecccCCCCCC-----ChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCC
Q 020104           82 -------GCTGVLHVATPVDFEDK-----EPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 -------~~d~Vih~a~~~~~~~~-----~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                             ++|+|||+||.......     +..+..+++|+.++.++++++.    +.+ .+++|++||...+...     
T Consensus       101 ~~~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~~~-----  174 (272)
T 1yb1_A          101 KVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNN-HGHIVTVASAAGHVSV-----  174 (272)
T ss_dssp             HHHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCCC-CCCH-----
T ss_pred             HHHHHCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEEechhhcCCC-----
Confidence                   68999999986542211     1123788999999877777664    445 6799999998766310     


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc------CCcEEEeccCceeCCCCCCCCCccHHHHHHHHh
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH------GLDLVTLIPSMVVGPFICPKFAGSVRSSLALIL  219 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~------~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~  219 (331)
                                       ++...|+.+|.+.+.+++.++.+.      +++++++|||.+.++....    .         
T Consensus       175 -----------------~~~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~~~~----~---------  224 (272)
T 1yb1_A          175 -----------------PFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKN----P---------  224 (272)
T ss_dssp             -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTC----T---------
T ss_pred             -----------------CCchhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccc----c---------
Confidence                             123579999999999999888764      7999999999998875221    0         


Q ss_pred             CCCcccccCCCccceeHHHHHHHHHHhhcCCC
Q 020104          220 GNREEYGFLLNTSMVHVDDVARAHIFLLEYPD  251 (331)
Q Consensus       220 ~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~  251 (331)
                        ....     ..+++.+|+|++++.++.++.
T Consensus       225 --~~~~-----~~~~~~~dva~~i~~~~~~~~  249 (272)
T 1yb1_A          225 --STSL-----GPTLEPEEVVNRLMHGILTEQ  249 (272)
T ss_dssp             --HHHH-----CCCCCHHHHHHHHHHHHHTTC
T ss_pred             --cccc-----cCCCCHHHHHHHHHHHHHcCC
Confidence              0011     267899999999999998753

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=99.89  E-value=1.1e-22  Score=170.78  Aligned_cols=203  Identities=20%  Similarity=0.189  Sum_probs=144.9

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      .++|++|||||+|+||++++++|+++|++|++++|+.     +..+.. +.+.+......++.++.+|+.|.+++.++++
T Consensus         5 ~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~   79 (250)
T 3nyw_A            5 KQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSK-----QNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIK   79 (250)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCH-----HHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHH
Confidence            3567899999999999999999999999999999987     222221 1111111111467899999999988887764


Q ss_pred             -------CccEEEEecccCCCCC-C---ChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCc
Q 020104           82 -------GCTGVLHVATPVDFED-K---EPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -------~~d~Vih~a~~~~~~~-~---~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                             ++|++||+||...... .   +..+..+++|+.++..+++++.    +.+ ..++|++||...+...      
T Consensus        80 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~~------  152 (250)
T 3nyw_A           80 DIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQK-NGYIFNVASRAAKYGF------  152 (250)
T ss_dssp             HHHHHHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC-------------
T ss_pred             HHHHhcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEEccHHhcCCC------
Confidence                   6899999999754221 1   1123788999999999988874    345 5799999997765311      


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE  223 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  223 (331)
                                      ++...|+.+|.+.+.+.+.++.+.   +++++.++||.+..+.            ... .....
T Consensus       153 ----------------~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~------------~~~-~~~~~  203 (250)
T 3nyw_A          153 ----------------ADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTDM------------AKK-AGTPF  203 (250)
T ss_dssp             ----------------CCTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHH------------HHH-TTCCS
T ss_pred             ----------------CCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCch------------hhh-cCCCc
Confidence                            124579999999999999988775   7999999999987552            110 11111


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCCC
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYPD  251 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~  251 (331)
                      ..     ..+++.+|+|+++++++..+.
T Consensus       204 ~~-----~~~~~p~dva~~v~~l~s~~~  226 (250)
T 3nyw_A          204 KD-----EEMIQPDDLLNTIRCLLNLSE  226 (250)
T ss_dssp             CG-----GGSBCHHHHHHHHHHHHTSCT
T ss_pred             cc-----ccCCCHHHHHHHHHHHHcCCC
Confidence            11     368899999999999998765

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=99.89  E-value=1.8e-22  Score=171.42  Aligned_cols=218  Identities=15%  Similarity=0.136  Sum_probs=152.9

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      +|++|||||+|+||++++++|+++|++|++++|+..    ......  .........++.++.+|+.|.+++.++++   
T Consensus        25 ~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~   98 (269)
T 3gk3_A           25 KRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERN----DHVSTW--LMHERDAGRDFKAYAVDVADFESCERCAEKVL   98 (269)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCH----HHHHHH--HHHHHTTTCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCch----HHHHHH--HHHHHhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence            467999999999999999999999999999986541    111111  11111123578999999999998887765   


Q ss_pred             ----CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCCcc
Q 020104           82 ----GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 ----~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                          ++|+|||+||.....      ..++ +..+++|+.++.++++++..    .+ ..++|++||...+..        
T Consensus        99 ~~~g~id~li~nAg~~~~~~~~~~~~~~~-~~~~~~N~~~~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~--------  168 (269)
T 3gk3_A           99 ADFGKVDVLINNAGITRDATFMKMTKGDW-DAVMRTDLDAMFNVTKQFIAGMVERR-FGRIVNIGSVNGSRG--------  168 (269)
T ss_dssp             HHHSCCSEEEECCCCCCCBCTTTCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHHC--------
T ss_pred             HHcCCCCEEEECCCcCCCcchhhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEeCChhhccC--------
Confidence                799999999865421      1123 37889999999988887753    44 579999999776531        


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcc
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREE  224 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~  224 (331)
                                    .++...|+.+|.+.+.+++.++.+.   +++++.++||.+.++........    ..   ..  ..
T Consensus       169 --------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~----~~---~~--~~  225 (269)
T 3gk3_A          169 --------------AFGQANYASAKAGIHGFTKTLALETAKRGITVNTVSPGYLATAMVEAVPQD----VL---EA--KI  225 (269)
T ss_dssp             --------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTC--------------C--CS
T ss_pred             --------------CCCcchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCcccchhhhhhchh----HH---HH--Hh
Confidence                          1234589999999999999888764   79999999999988753321100    00   00  00


Q ss_pred             cccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          225 YGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       225 ~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ........+.+.+|+|+++++++..+.   .|..++++++
T Consensus       226 ~~~~~~~~~~~p~dvA~~v~~L~s~~~~~itG~~i~vdgG  265 (269)
T 3gk3_A          226 LPQIPVGRLGRPDEVAALIAFLCSDDAGFVTGADLAINGG  265 (269)
T ss_dssp             GGGCTTSSCBCHHHHHHHHHHHTSTTCTTCCSCEEEESTT
T ss_pred             hhcCCcCCccCHHHHHHHHHHHhCCCcCCeeCcEEEECCC
Confidence            111111367899999999999998653   2456777653

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=99.89  E-value=1.8e-23  Score=177.61  Aligned_cols=218  Identities=12%  Similarity=0.080  Sum_probs=154.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+.     +..+. .+.+..   ...++.++.+|+.|.+++.++++ 
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~-----~~~~~~~~~l~~---~~~~~~~~~~Dv~d~~~v~~~~~~   96 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDP-----SRVAQTVQEFRN---VGHDAEAVAFDVTSESEIIEAFAR   96 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCH-----HHHHHHHHHHHH---TTCCEEECCCCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHh---cCCceEEEEcCCCCHHHHHHHHHH
Confidence            457899999999999999999999999999999876     22221 111111   22578999999999998888875 


Q ss_pred             ------CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|++||+||....      ..+++ +..+++|+.++.++++++..    .+ ..++|++||...+..      
T Consensus        97 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iV~isS~~~~~~------  168 (271)
T 4ibo_A           97 LDEQGIDVDILVNNAGIQFRKPMIELETADW-QRVIDTNLTSAFMIGREAAKRMIPRG-YGKIVNIGSLTSELA------  168 (271)
T ss_dssp             HHHHTCCCCEEEECCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSB------
T ss_pred             HHHHCCCCCEEEECCCCCCCCCchhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEccHHhCCC------
Confidence                  69999999996542      11223 37899999999999777654    34 569999999765421      


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                      .++...|+.+|.+.+.+++.++.+   .+++++.++||.+.++....... . ......... .
T Consensus       169 ----------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~-~-~~~~~~~~~-~  229 (271)
T 4ibo_A          169 ----------------RATVAPYTVAKGGIKMLTRAMAAEWAQYGIQANAIGPGYMLTDMNQALID-N-PEFDAWVKA-R  229 (271)
T ss_dssp             ----------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHH-C-HHHHHHHHH-H
T ss_pred             ----------------CCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeccEeCcchhhccc-C-HHHHHHHHh-c
Confidence                            123558999999999999998877   47999999999998874211000 0 011111111 1


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ...     ..+.+.+|+|+++++++....   .|..++++++
T Consensus       230 ~p~-----~r~~~pedva~~v~~L~s~~~~~itG~~i~vdGG  266 (271)
T 4ibo_A          230 TPA-----KRWGKPQELVGTAVFLSASASDYVNGQIIYVDGG  266 (271)
T ss_dssp             STT-----CSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             CCC-----CCCcCHHHHHHHHHHHhCccccCCCCcEEEECCC
Confidence            112     267889999999999987543   2456777654

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=99.89  E-value=1.6e-22  Score=173.99  Aligned_cols=219  Identities=13%  Similarity=-0.015  Sum_probs=156.6

Q ss_pred             CCceEEEecCcc--hhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGGTG--FIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      .+|++|||||+|  +||++++++|+++|++|++++|+.     ...+.+..+.+.   ...+.++.+|+.|.+++.++++
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~  100 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSE-----TFKKRVDPLAES---LGVKLTVPCDVSDAESVDNMFK  100 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG-----GGHHHHHHHHHH---HTCCEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCCh-----HHHHHHHHHHHh---cCCeEEEEcCCCCHHHHHHHHH
Confidence            357899999998  999999999999999999999986     333333222111   1346889999999998888775


Q ss_pred             -------CccEEEEecccCCC----------CCCChhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCC
Q 020104           82 -------GCTGVLHVATPVDF----------EDKEPEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        82 -------~~d~Vih~a~~~~~----------~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~  143 (331)
                             ++|++||+||....          ...++ +..+++|+.++.++++++...- ...++|++||...+..    
T Consensus       101 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~~----  175 (296)
T 3k31_A          101 VLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNF-LTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEKV----  175 (296)
T ss_dssp             HHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHH-HHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSC----
T ss_pred             HHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhccC----
Confidence                   68999999986531          12233 3789999999999999988652 1359999999776521    


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhC
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILG  220 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~  220 (331)
                                        .+....|+.+|.+.+.+++.++.+.   +++++.++||.+.++.....  ............
T Consensus       176 ------------------~~~~~~Y~asKaal~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~--~~~~~~~~~~~~  235 (296)
T 3k31_A          176 ------------------VPHYNVMGVCKAALEASVKYLAVDLGKQQIRVNAISAGPVRTLASSGI--SDFHYILTWNKY  235 (296)
T ss_dssp             ------------------CTTTTHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCCSSCCSC--HHHHHHHHHHHH
T ss_pred             ------------------CCCchhhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEECCCcCchhhcc--cchHHHHHHHHh
Confidence                              1224579999999999999988765   79999999999998753321  111111111111


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCCC--C-CceEEEecc
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYPD--A-KGRYICSSH  261 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~-~~~~~~~~~  261 (331)
                       ...+     ..+...+|+|+++++++....  . |..++++++
T Consensus       236 -~~p~-----~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG  273 (296)
T 3k31_A          236 -NSPL-----RRNTTLDDVGGAALYLLSDLGRGTTGETVHVDCG  273 (296)
T ss_dssp             -HSTT-----SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             -cCCC-----CCCCCHHHHHHHHHHHcCCccCCccCCEEEECCC
Confidence             1122     267889999999999998543  2 446677654

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=99.89  E-value=8.7e-23  Score=171.91  Aligned_cols=217  Identities=17%  Similarity=0.125  Sum_probs=150.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      |+|++|||||+|+||++++++|++.|  +.|++++|+.     +..+.+..  +.   ..++.++.+|+.|.+++.++++
T Consensus         1 Mgk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~-----~~~~~~~~--~~---~~~~~~~~~Dv~~~~~v~~~~~   70 (254)
T 3kzv_A            1 MGKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSE-----APLKKLKE--KY---GDRFFYVVGDITEDSVLKQLVN   70 (254)
T ss_dssp             -CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCH-----HHHHHHHH--HH---GGGEEEEESCTTSHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCH-----HHHHHHHH--Hh---CCceEEEECCCCCHHHHHHHHH
Confidence            35799999999999999999999985  7888888876     22222211  11   1468899999999998888775


Q ss_pred             -------CccEEEEecccCCC-------CCCChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCC
Q 020104           82 -------GCTGVLHVATPVDF-------EDKEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        82 -------~~d~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~  143 (331)
                             ++|++||+||....       ..+++ +..+++|+.++.++++++    ++.+  .++|++||...+..    
T Consensus        71 ~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~-~~~~~~N~~g~~~~~~~~~~~m~~~~--g~iv~isS~~~~~~----  143 (254)
T 3kzv_A           71 AAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAW-KKLYDINFFSIVSLVGIALPELKKTN--GNVVFVSSDACNMY----  143 (254)
T ss_dssp             HHHHHHSCCCEEEEECCCCCCCTTTTSCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCSCCCCS----
T ss_pred             HHHHhcCCccEEEECCcccCCCCCcccCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHhcC--CeEEEEcCchhccC----
Confidence                   68999999996431       11123 378999999999999988    4444  69999999776531    


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc-CCcEEEeccCceeCCCCCCCCCcc-----HHHHHHH
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH-GLDLVTLIPSMVVGPFICPKFAGS-----VRSSLAL  217 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~-~~~~~ilRp~~v~G~~~~~~~~~~-----~~~~~~~  217 (331)
                                        .++...|+.+|.+.+.+.+.++.+. +++++.++||.+.++.........     .......
T Consensus       144 ------------------~~~~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~  205 (254)
T 3kzv_A          144 ------------------FSSWGAYGSSKAALNHFAMTLANEERQVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLKM  205 (254)
T ss_dssp             ------------------SCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCCCCSCCCCCCCCTTTSCHHHHHH
T ss_pred             ------------------CCCcchHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcccchhHHHhhcccCccccCHHHHHH
Confidence                              1234589999999999999998875 899999999999987543211100     0111111


Q ss_pred             HhCCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCc-eEEEecc
Q 020104          218 ILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKG-RYICSSH  261 (331)
Q Consensus       218 ~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~-~~~~~~~  261 (331)
                      ... ....     ..+.+.+|+|+++++++..+.   ..| .++++++
T Consensus       206 ~~~-~~~~-----~r~~~p~dva~~v~~L~s~~~~~~itG~~i~vdg~  247 (254)
T 3kzv_A          206 FRG-LKEN-----NQLLDSSVPATVYAKLALHGIPDGVNGQYLSYNDP  247 (254)
T ss_dssp             HHH-HHTT-----C----CHHHHHHHHHHHHHCCCGGGTTCEEETTCG
T ss_pred             HHH-HHhc-----CCcCCcccHHHHHHHHHhhcccCCCCccEEEecCc
Confidence            111 1111     268899999999999997653   344 5566554

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=99.89  E-value=3.3e-23  Score=176.70  Aligned_cols=220  Identities=13%  Similarity=0.108  Sum_probs=154.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+.     ..... ...+...  ...++.++.+|+.|.+++.++++ 
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~   98 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSL-----PRVLTAARKLAGA--TGRRCLPLSMDVRAPPAVMAAVDQ   98 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCH-----HHHHHHHHHHHHH--HSSCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHHh--cCCcEEEEEcCCCCHHHHHHHHHH
Confidence            357899999999999999999999999999999986     22111 1111110  12468899999999998887775 


Q ss_pred             ------CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|++||+||....      ..+++ +..+++|+.++.++++++..    .+ ..++|++||...+..      
T Consensus        99 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~------  170 (277)
T 4fc7_A           99 ALKEFGRIDILINCAAGNFLCPAGALSFNAF-KTVMDIDTSGTFNVSRVLYEKFFRDH-GGVIVNITATLGNRG------  170 (277)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHTHHHH-CEEEEEECCSHHHHT------
T ss_pred             HHHHcCCCCEEEECCcCCCCCCcccCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECchhhCCC------
Confidence                  68999999985432      11223 37899999999999998743    33 469999999876531      


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                      .+....|+.+|.+.+.+++.++.+.   +++++.++||.+.++...................  
T Consensus       171 ----------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~--  232 (277)
T 4fc7_A          171 ----------------QALQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTEGLRRLGGPQASLSTKVTA--  232 (277)
T ss_dssp             ----------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSSSHHHHHHSCCHHHHHHHHHT--
T ss_pred             ----------------CCCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCEecchhhhhccCCHHHHHHHhcc--
Confidence                            1224579999999999999988775   7999999999998763110000000111111111  


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC--C-CceEEEecc
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD--A-KGRYICSSH  261 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~-~~~~~~~~~  261 (331)
                      ..+     ..+.+.+|+|+++++++....  . |..++++|+
T Consensus       233 ~p~-----~r~~~p~dvA~~v~fL~s~~~~~itG~~i~vdGG  269 (277)
T 4fc7_A          233 SPL-----QRLGNKTEIAHSVLYLASPLASYVTGAVLVADGG  269 (277)
T ss_dssp             STT-----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             CCC-----CCCcCHHHHHHHHHHHcCCccCCcCCCEEEECCC
Confidence            112     267899999999999998543  2 446677654

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=99.89  E-value=2.7e-22  Score=168.38  Aligned_cols=206  Identities=13%  Similarity=0.057  Sum_probs=144.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|+||||||+|+||++++++|+++|++|++++|+.        +..+.   +    ..+.++ +|+  .+++.++++  
T Consensus        18 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~--------~~~~~---~----~~~~~~-~D~--~~~~~~~~~~~   79 (249)
T 1o5i_A           18 RDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE--------ELLKR---S----GHRYVV-CDL--RKDLDLLFEKV   79 (249)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH--------HHHHH---T----CSEEEE-CCT--TTCHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH--------HHHHh---h----CCeEEE-eeH--HHHHHHHHHHh
Confidence            457899999999999999999999999999999976        11111   1    246667 999  445665554  


Q ss_pred             -CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHH----HHHhcCCccEEEEecccceeecCCCCCCcccCC
Q 020104           82 -GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILK----SCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDET  150 (331)
Q Consensus        82 -~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~----~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~  150 (331)
                       ++|+|||+||.....      ..++ +..+++|+.++.++.+    .+++.+ .+++|++||...+..           
T Consensus        80 ~~iD~lv~~Ag~~~~~~~~~~~~~~~-~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~-----------  146 (249)
T 1o5i_A           80 KEVDILVLNAGGPKAGFFDELTNEDF-KEAIDSLFLNMIKIVRNYLPAMKEKG-WGRIVAITSFSVISP-----------  146 (249)
T ss_dssp             CCCSEEEECCCCCCCBCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSC-----------
T ss_pred             cCCCEEEECCCCCCCCChhhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEcchHhcCC-----------
Confidence             799999999864421      1123 3788899988766544    455566 689999999877631           


Q ss_pred             CCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHH-HHhCCCcccc
Q 020104          151 FWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLA-LILGNREEYG  226 (331)
Q Consensus       151 ~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~-~~~~~~~~~~  226 (331)
                                 .++...|+.+|.+.+.+.+.++.+   +++++++++||.++++.......    .... .... .... 
T Consensus       147 -----------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~----~~~~~~~~~-~~p~-  209 (249)
T 1o5i_A          147 -----------IENLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELLS----EEKKKQVES-QIPM-  209 (249)
T ss_dssp             -----------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHSC----HHHHHHHHT-TSTT-
T ss_pred             -----------CCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCccCcccccch----hhHHHHHHh-cCCC-
Confidence                       122457999999999999988876   48999999999999885221000    0111 1111 1111 


Q ss_pred             cCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          227 FLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       227 ~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                          ..+++++|+|+++++++..+.   .+..++++++
T Consensus       210 ----~~~~~~~dvA~~i~~l~s~~~~~~tG~~~~vdgG  243 (249)
T 1o5i_A          210 ----RRMAKPEEIASVVAFLCSEKASYLTGQTIVVDGG  243 (249)
T ss_dssp             ----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             ----CCCcCHHHHHHHHHHHcCccccCCCCCEEEECCC
Confidence                368899999999999987543   2446677654

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=99.89  E-value=5.1e-23  Score=178.86  Aligned_cols=241  Identities=15%  Similarity=0.131  Sum_probs=150.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+++||||||+|+||++++++|+++|++|++++|+.     +..+.. ..+... ....++.++.+|+.|.+++.++++ 
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~-----~~~~~~~~~l~~~-~~~~~~~~~~~Dl~~~~~v~~~~~~   80 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQ-----DSIDKALATLEAE-GSGPEVMGVQLDVASREGFKMAADE   80 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHHH-TCGGGEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHHhc-CCCCeEEEEECCCCCHHHHHHHHHH
Confidence            346899999999999999999999999999999987     222222 111111 111378999999999998888775 


Q ss_pred             ------CccEEEEecccCCCCC-----CChhhHHHHHHHHHHHHHHHHHHhcC---------CccEEEEecccceeecCC
Q 020104           82 ------GCTGVLHVATPVDFED-----KEPEEVITQRAINGTLGILKSCLKSG---------TVKRVVYTSSNAAVFYND  141 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~~-----~~~~~~~~~~n~~~~~~l~~~~~~~~---------~~~~~v~~SS~~~~~~~~  141 (331)
                            ++|+|||+||......     .+..+..+++|+.++.++++++....         ...++|++||...+... 
T Consensus        81 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~~~-  159 (319)
T 3ioy_A           81 VEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAA-  159 (319)
T ss_dssp             HHHHTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTCCC-
T ss_pred             HHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccccccCC-
Confidence                  5799999999644211     12223789999999999998876532         13579999998766311 


Q ss_pred             CCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCC--CccHHHHHH
Q 020104          142 KDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKF--AGSVRSSLA  216 (331)
Q Consensus       142 ~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~--~~~~~~~~~  216 (331)
                                           +....|+.||.+.+.+.+.++.+.   ++++++++||.|.++......  ...+.....
T Consensus       160 ---------------------~~~~~Y~aSKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~  218 (319)
T 3ioy_A          160 ---------------------GSPGIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYIYASDDIRPDALKGEVK  218 (319)
T ss_dssp             ---------------------SSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCBC-------------------
T ss_pred             ---------------------CCCHHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEcCeEccCcccccccCchhhccccc
Confidence                                 124579999997777777766543   899999999999887533211  000000000


Q ss_pred             HHhCCCcccccCCC--ccceeHHHHHHHHHHhhcCCCCCceEEEeccc--cCHHHHHHHHHhhCC
Q 020104          217 LILGNREEYGFLLN--TSMVHVDDVARAHIFLLEYPDAKGRYICSSHT--LTIQEMAEFLSAKYP  277 (331)
Q Consensus       217 ~~~~~~~~~~~~~~--~~~i~v~D~a~~~~~~~~~~~~~~~~~~~~~~--~s~~e~~~~i~~~~~  277 (331)
                      ...  .........  ...++++|+|++++.+++++.   .+..++..  -.+++....+...++
T Consensus       219 ~~~--~~~~~~~~~~~~~~~~pe~vA~~~~~al~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~  278 (319)
T 3ioy_A          219 PVD--KTAVERLAGVHEFGMEPDVIGARVIEAMKANR---LHIFSHPDHKEELREVFDEIIAEYQ  278 (319)
T ss_dssp             ------------CCGGGSSBCHHHHHHHHHHHHHTTC---SEECCCSTTHHHHHHHHHHHHHTCC
T ss_pred             chh--HHHHHHHHHhhhcCCCHHHHHHHHHHHHHcCC---CEEEcCHHHHHHHHHHHHHHHHhhh
Confidence            000  000000000  123899999999999998753   33333322  133444444444444

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=99.89  E-value=1.2e-22  Score=170.71  Aligned_cols=207  Identities=15%  Similarity=0.109  Sum_probs=141.0

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      ..+|++|||||+|+||++++++|+++|++|++++|+.     +..+.. ..+.+   ...++.++.+|+.|.+++.++++
T Consensus         5 ~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~   76 (252)
T 3h7a_A            5 PRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNG-----EKLAPLVAEIEA---AGGRIVARSLDARNEDEVTAFLN   76 (252)
T ss_dssp             CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSG-----GGGHHHHHHHHH---TTCEEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHh---cCCeEEEEECcCCCHHHHHHHHH
Confidence            3467899999999999999999999999999999987     232222 11211   12578999999999999888875


Q ss_pred             ------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|++||+||.....      ..++ +..+++|+.++.++++++.    +.+ ..++|++||...+..      
T Consensus        77 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~-~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~------  148 (252)
T 3h7a_A           77 AADAHAPLEVTIFNVGANVNFPILETTDRVF-RKVWEMACWAGFVSGRESARLMLAHG-QGKIFFTGATASLRG------  148 (252)
T ss_dssp             HHHHHSCEEEEEECCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEEGGGTCC------
T ss_pred             HHHhhCCceEEEECCCcCCCCCcccCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECCHHHcCC------
Confidence                  689999999965421      1123 3788999999988888764    444 579999999776531      


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcE-EEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDL-VTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~-~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                                      .+....|+.+|.+.+.+.+.++.+.   ++++ +++.||.+..+.........    ..     
T Consensus       149 ----------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~n~v~PG~v~T~~~~~~~~~~----~~-----  203 (252)
T 3h7a_A          149 ----------------GSGFAAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWVRERREQM----FG-----  203 (252)
T ss_dssp             ----------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC--------------------------
T ss_pred             ----------------CCCCccHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCCccCChhhhccchhh----hh-----
Confidence                            1224579999999999999988764   7999 89999999876432211100    00     


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCCC
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPDA  252 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~  252 (331)
                        .+.......+++.+|+|+++++++..+..
T Consensus       204 --~~~~~~~~~~~~pedvA~~~~~l~s~~~~  232 (252)
T 3h7a_A          204 --KDALANPDLLMPPAAVAGAYWQLYQQPKS  232 (252)
T ss_dssp             ------------CCHHHHHHHHHHHHHCCGG
T ss_pred             --hhhhcCCccCCCHHHHHHHHHHHHhCchh
Confidence              00000111388999999999999986653

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=99.89  E-value=2.1e-22  Score=169.29  Aligned_cols=196  Identities=13%  Similarity=0.066  Sum_probs=146.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      |+|+||||||+|+||++++++|+++|++|++++|+..     ..              ....+.+|+.|.+++.++++  
T Consensus        21 m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~-----~~--------------~~~~~~~d~~d~~~v~~~~~~~   81 (251)
T 3orf_A           21 MSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFREN-----PN--------------ADHSFTIKDSGEEEIKSVIEKI   81 (251)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC-----TT--------------SSEEEECSCSSHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc-----cc--------------cccceEEEeCCHHHHHHHHHHH
Confidence            5688999999999999999999999999999999872     11              11356789999988887764  


Q ss_pred             -----CccEEEEecccCCCC-------CCChhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCCCCccc
Q 020104           82 -----GCTGVLHVATPVDFE-------DKEPEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~-------~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                           ++|+|||+||.....       ..++ +..+++|+.++.++++++...- .-.++|++||...+..         
T Consensus        82 ~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~---------  151 (251)
T 3orf_A           82 NSKSIKVDTFVCAAGGWSGGNASSDEFLKSV-KGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALNR---------  151 (251)
T ss_dssp             HTTTCCEEEEEECCCCCCCBCTTSTTHHHHH-HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSC---------
T ss_pred             HHHcCCCCEEEECCccCCCCCcccccCHHHH-HHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhccC---------
Confidence                 479999999964321       1122 3788899999999999988752 0248999999876531         


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH-----cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE-----HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE  223 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~-----~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  223 (331)
                                   .++...|+.+|.+.+.+++.++.+     .++++++++||.+.++.            ...... ..
T Consensus       152 -------------~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~~------------~~~~~~-~~  205 (251)
T 3orf_A          152 -------------TSGMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTPT------------NRKYMS-DA  205 (251)
T ss_dssp             -------------CTTBHHHHHHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCHH------------HHHHCT-TS
T ss_pred             -------------CCCCchhHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCcc------------hhhhcc-cc
Confidence                         123458999999999999998877     47999999999987652            111111 11


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcC---CCC-CceEEEe
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEY---PDA-KGRYICS  259 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~---~~~-~~~~~~~  259 (331)
                      ..     ..+++.+|+|+++++++..   ... |..+++.
T Consensus       206 ~~-----~~~~~~~dva~~i~~l~~~~~~~~~tG~~i~v~  240 (251)
T 3orf_A          206 NF-----DDWTPLSEVAEKLFEWSTNSDSRPTNGSLVKFE  240 (251)
T ss_dssp             CG-----GGSBCHHHHHHHHHHHHHCGGGCCCTTCEEEEE
T ss_pred             cc-----cccCCHHHHHHHHHHHhcCccccCCcceEEEEe
Confidence            11     3788999999999999987   333 3455553

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.89  E-value=8.4e-23  Score=172.75  Aligned_cols=215  Identities=20%  Similarity=0.175  Sum_probs=153.3

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+.     +..+...  .++   ..++.++.+|+.|.+++.++++  
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~-----~~~~~~~--~~~---~~~~~~~~~D~~~~~~v~~~~~~~   74 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREE-----RLLAEAV--AAL---EAEAIAVVADVSDPKAVEAVFAEA   74 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHH--HTC---CSSEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHH--HHh---cCceEEEEcCCCCHHHHHHHHHHH
Confidence            357899999999999999999999999999999986     2222111  111   1468899999999998887765  


Q ss_pred             -----CccEEEEecccCCCC---CCC--hhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCCCCcccCC
Q 020104           82 -----GCTGVLHVATPVDFE---DKE--PEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKDVDMMDET  150 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~---~~~--~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~E~  150 (331)
                           ++|++||+||.....   ..+  ..+..+++|+.++.++++++...- ...++|++||...++ .          
T Consensus        75 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~-~----------  143 (263)
T 2a4k_A           75 LEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLG-A----------  143 (263)
T ss_dssp             HHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCC-H----------
T ss_pred             HHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhcC-C----------
Confidence                 579999999865421   111  113688999999999999987652 136999999977651 1          


Q ss_pred             CCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCccccc
Q 020104          151 FWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGF  227 (331)
Q Consensus       151 ~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (331)
                                  ++...|+.+|...+.+.+.++.+.   ++++++++||.+.++.... ..   .......... ...  
T Consensus       144 ------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~-~~---~~~~~~~~~~-~p~--  204 (263)
T 2a4k_A          144 ------------FGLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAG-LP---PWAWEQEVGA-SPL--  204 (263)
T ss_dssp             ------------HHHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTT-SC---HHHHHHHHHT-STT--
T ss_pred             ------------CCcHHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCcCcCchhhh-cC---HHHHHHHHhc-CCC--
Confidence                        113479999999999999888764   7999999999999875332 11   1111111111 111  


Q ss_pred             CCCccceeHHHHHHHHHHhhcCCC--C-CceEEEecc
Q 020104          228 LLNTSMVHVDDVARAHIFLLEYPD--A-KGRYICSSH  261 (331)
Q Consensus       228 ~~~~~~i~v~D~a~~~~~~~~~~~--~-~~~~~~~~~  261 (331)
                         ..+.+.+|+|+++++++..+.  . +..+++++.
T Consensus       205 ---~~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdgG  238 (263)
T 2a4k_A          205 ---GRAGRPEEVAQAALFLLSEESAYITGQALYVDGG  238 (263)
T ss_dssp             ---CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             ---CCCcCHHHHHHHHHHHhCccccCCcCCEEEECCC
Confidence               267899999999999997543  2 445667654

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=99.89  E-value=1.5e-22  Score=171.26  Aligned_cols=199  Identities=20%  Similarity=0.157  Sum_probs=143.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|+||||||+|+||++++++|+++|++|++++|+.     +..+.. ..+..   ...++.++.+|+.|.+++.++++ 
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~v~~~~~~   99 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDV-----EKLRAVEREIVA---AGGEAESHACDLSHSDAIAAFATG   99 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHH---TTCEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHHH---hCCceeEEEecCCCHHHHHHHHHH
Confidence            357899999999999999999999999999999987     222221 11111   12578999999999998887764 


Q ss_pred             ------CccEEEEecccCC-------CCCCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCC
Q 020104           82 ------GCTGVLHVATPVD-------FEDKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 ------~~d~Vih~a~~~~-------~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                            ++|+|||+||...       ....++ +..+++|+.++.++++++..    .+ ..++|++||...+..     
T Consensus       100 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~-----  172 (262)
T 3rkr_A          100 VLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEW-DALIAVNLKAPYLLLRAFAPAMIAAK-RGHIINISSLAGKNP-----  172 (262)
T ss_dssp             HHHHHSCCSEEEECCCCCCCSSCGGGSCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHTT-CCEEEEECSSCSSCC-----
T ss_pred             HHHhcCCCCEEEECCCccCCCCCcccCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhCC-CceEEEEechhhcCC-----
Confidence                  5899999999632       111123 37889999999999888653    44 579999999776521     


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                                       .++...|+.+|.+.+.+++.++.+   .++++++++||.+..+.....            ...
T Consensus       173 -----------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~------------~~~  223 (262)
T 3rkr_A          173 -----------------VADGAAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEFGVGL------------SAK  223 (262)
T ss_dssp             -----------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-----------------------
T ss_pred             -----------------CCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCcCCccccc------------ccc
Confidence                             123458999999999999988876   489999999999976632110            000


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCCC
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPDA  252 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~  252 (331)
                       ..     ...++..+|+|+++++++..+..
T Consensus       224 -~~-----~~~~~~p~dvA~~v~~l~s~~~~  248 (262)
T 3rkr_A          224 -KS-----ALGAIEPDDIADVVALLATQADQ  248 (262)
T ss_dssp             -----------CCCHHHHHHHHHHHHTCCTT
T ss_pred             -cc-----cccCCCHHHHHHHHHHHhcCccc
Confidence             00     12578999999999999987543

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=99.89  E-value=3e-22  Score=169.74  Aligned_cols=219  Identities=16%  Similarity=0.124  Sum_probs=151.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|++|||||+|+||+++++.|+++|++|++++|+.     ...+.. ..+.+  ....++.++.+|+.|.+++.++++ 
T Consensus        20 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~~~l~~--~~~~~~~~~~~Dl~~~~~v~~~~~~   92 (267)
T 1vl8_A           20 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL-----EEASEAAQKLTE--KYGVETMAFRCDVSNYEEVKKLLEA   92 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHH--HHCCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHH--hcCCeEEEEEcCCCCHHHHHHHHHH
Confidence            457899999999999999999999999999999986     222111 11100  001467889999999998887765 


Q ss_pred             ------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccc-eeecCCCCC
Q 020104           82 ------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNA-AVFYNDKDV  144 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~-~~~~~~~~~  144 (331)
                            ++|+|||+||.....      ..++ +..+++|+.++.++++++.    +.+ .+++|++||.. ... +    
T Consensus        93 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~~~~-~----  165 (267)
T 1vl8_A           93 VKEKFGKLDTVVNAAGINRRHPAEEFPLDEF-RQVIEVNLFGTYYVCREAFSLLRESD-NPSIINIGSLTVEEV-T----  165 (267)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHTTCS-SCEEEEECCGGGTCC-C----
T ss_pred             HHHHcCCCCEEEECCCcCCCCChhhCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEECCcchhcc-C----
Confidence                  689999999865421      1122 3688899999999988774    344 67999999976 221 0    


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                                       .++...|+.+|.+.+.+++.++.+.   ++++++++||.+.++....... . ..........
T Consensus       166 -----------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~-~-~~~~~~~~~~  226 (267)
T 1vl8_A          166 -----------------MPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFS-D-PEKLDYMLKR  226 (267)
T ss_dssp             -----------------SSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHT-C-HHHHHHHHHT
T ss_pred             -----------------CCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcccccccccc-C-hHHHHHHHhh
Confidence                             1224579999999999999988763   8999999999998764211000 0 0111111111


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCC--C-CceEEEecc
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPD--A-KGRYICSSH  261 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~-~~~~~~~~~  261 (331)
                       ...     ..+++.+|+|+++++++..+.  . |..+.++++
T Consensus       227 -~p~-----~~~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG  263 (267)
T 1vl8_A          227 -IPL-----GRTGVPEDLKGVAVFLASEEAKYVTGQIIFVDGG  263 (267)
T ss_dssp             -CTT-----SSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             -CCC-----CCCcCHHHHHHHHHHHcCccccCCcCCeEEECCC
Confidence             111     267899999999999997643  2 445566554

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=99.89  E-value=1.6e-22  Score=170.18  Aligned_cols=214  Identities=14%  Similarity=0.130  Sum_probs=149.5

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      +|++|||||+|+||++++++|+++|++|++++|+.     +..+...  .++   ..++.++.+|+.|.+++.++++   
T Consensus         6 ~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~--~~~---~~~~~~~~~D~~~~~~v~~~~~~~~   75 (253)
T 1hxh_A            6 GKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINE-----AAGQQLA--AEL---GERSMFVRHDVSSEADWTLVMAAVQ   75 (253)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCH-----HHHHHHH--HHH---CTTEEEECCCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHH--HHc---CCceEEEEccCCCHHHHHHHHHHHH
Confidence            57899999999999999999999999999999986     2222111  111   1468899999999998887765   


Q ss_pred             ----CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCCCCcc
Q 020104           82 ----GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 ----~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                          ++|+|||+|+.....      ..++ +..+++|+.++..+.+++    ++.+  .++|++||...+..        
T Consensus        76 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~-~~~~~~N~~~~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~--------  144 (253)
T 1hxh_A           76 RRLGTLNVLVNNAGILLPGDMETGRLEDF-SRLLKINTESVFIGCQQGIAAMKETG--GSIINMASVSSWLP--------  144 (253)
T ss_dssp             HHHCSCCEEEECCCCCCCBCTTTCCHHHH-HHHHHHHTHHHHHHHHHHHHHHTTTC--EEEEEECCGGGTSC--------
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHH-HHHHHhhcHHHHHHHHHHHHHHHHcC--CEEEEEcchhhcCC--------
Confidence                479999999865421      1123 378899988777666654    3444  79999999876531        


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc-----CCcEEEeccCceeCCCCCCCC-CccHHHHHHHHhCC
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH-----GLDLVTLIPSMVVGPFICPKF-AGSVRSSLALILGN  221 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~-----~~~~~ilRp~~v~G~~~~~~~-~~~~~~~~~~~~~~  221 (331)
                                    .++...|+.+|.+.+.+++.++.+.     +++++++|||.++++...... ......   .....
T Consensus       145 --------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~---~~~~~  207 (253)
T 1hxh_A          145 --------------IEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKGVSKE---MVLHD  207 (253)
T ss_dssp             --------------CTTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCTTCCHH---HHBCB
T ss_pred             --------------CCCCccHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEeCCccCchhhhccchhhhHH---HHhhh
Confidence                          1224579999999999999887663     899999999999987421100 000000   01110


Q ss_pred             --CcccccCCCccceeHHHHHHHHHHhhcCCC--C-CceEEEecc
Q 020104          222 --REEYGFLLNTSMVHVDDVARAHIFLLEYPD--A-KGRYICSSH  261 (331)
Q Consensus       222 --~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~-~~~~~~~~~  261 (331)
                        ....     ..+.+.+|+|+++++++..+.  . +..+++++.
T Consensus       208 ~~~~p~-----~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG  247 (253)
T 1hxh_A          208 PKLNRA-----GRAYMPERIAQLVLFLASDESSVMSGSELHADNS  247 (253)
T ss_dssp             TTTBTT-----CCEECHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred             hccCcc-----CCCCCHHHHHHHHHHHcCccccCCCCcEEEECCC
Confidence              1111     368899999999999997653  2 445667654

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=99.89  E-value=1.3e-22  Score=172.29  Aligned_cols=206  Identities=14%  Similarity=0.124  Sum_probs=141.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      ++|++|||||+|+||++++++|+++|++|++++|+.     +..+....  ++   ..++.++.+|+.|.+++.++++  
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~-----~~~~~~~~--~~---~~~~~~~~~Dv~d~~~v~~~~~~~   96 (272)
T 4dyv_A           27 GKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRL-----DALQETAA--EI---GDDALCVPTDVTDPDSVRALFTAT   96 (272)
T ss_dssp             -CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHH--HH---TSCCEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHH--Hh---CCCeEEEEecCCCHHHHHHHHHHH
Confidence            346799999999999999999999999999999986     22222111  11   1467899999999998888775  


Q ss_pred             -----CccEEEEecccCCC-------CCCChhhHHHHHHHHHHHHHHHHHHhc----C-CccEEEEecccceeecCCCCC
Q 020104           82 -----GCTGVLHVATPVDF-------EDKEPEEVITQRAINGTLGILKSCLKS----G-TVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~~~----~-~~~~~v~~SS~~~~~~~~~~~  144 (331)
                           ++|++||+||....       ..+++ +..+++|+.++.++++++...    + ...++|++||...+..     
T Consensus        97 ~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~-~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~-----  170 (272)
T 4dyv_A           97 VEKFGRVDVLFNNAGTGAPAIPMEDLTFAQW-KQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSP-----  170 (272)
T ss_dssp             HHHHSCCCEEEECCCCCCCSSCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTSC-----
T ss_pred             HHHcCCCCEEEECCCCCCCCCChhhCCHHHH-HHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcCC-----
Confidence                 79999999996432       11122 378999999988888876543    1 0259999999776521     


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                                       .++...|+.+|.+.+.+++.++.+.   +++++.++||.+..+.......    . .      
T Consensus       171 -----------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~----~-~------  222 (272)
T 4dyv_A          171 -----------------RPYSAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQKMKA----G-V------  222 (272)
T ss_dssp             -----------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEECC----------------------
T ss_pred             -----------------CCCchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEECcccChhhhhhcc----c-c------
Confidence                             1235579999999999999988764   7999999999998774221100    0 0      


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCCCC
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPDAK  253 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~  253 (331)
                      ...........+++++|+|+++++++..+...
T Consensus       223 ~~~~~~~~~~~~~~pedvA~~v~fL~s~~~~~  254 (272)
T 4dyv_A          223 PQADLSIKVEPVMDVAHVASAVVYMASLPLDA  254 (272)
T ss_dssp             -------------CHHHHHHHHHHHHHSCTTS
T ss_pred             hhhhhcccccCCCCHHHHHHHHHHHhCCCCcC
Confidence            00000001136889999999999999977653

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=99.89  E-value=8.3e-22  Score=169.84  Aligned_cols=229  Identities=16%  Similarity=0.076  Sum_probs=156.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcc----cCCccccccc-cCCCCCCCcEEEEeCCCCCCccHHH
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPE----HRNSKDLSFL-KNLPGASERLRIFHADLSHPDGFDA   78 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~D~~~~~~~~~   78 (331)
                      .+|++|||||+|+||.++++.|++.|++|++++|+.....    ....+.+... .++.....++.++.+|+.|.+++.+
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~  106 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAMQA  106 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHH
Confidence            3578999999999999999999999999999999742100    0011111111 1111123578999999999998888


Q ss_pred             Hhc-------CccEEEEecccCCCC-------CCChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecC
Q 020104           79 AIA-------GCTGVLHVATPVDFE-------DKEPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYN  140 (331)
Q Consensus        79 ~~~-------~~d~Vih~a~~~~~~-------~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~  140 (331)
                      +++       ++|++||+||.....       .+++ +..+++|+.++.++++++...    +...++|++||...+.. 
T Consensus       107 ~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~~~~-  184 (299)
T 3t7c_A          107 AVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTW-RDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLRG-  184 (299)
T ss_dssp             HHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGGTSC-
T ss_pred             HHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccC-
Confidence            775       699999999865422       1123 478999999999999987543    21469999999776521 


Q ss_pred             CCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCC----------
Q 020104          141 DKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKF----------  207 (331)
Q Consensus       141 ~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~----------  207 (331)
                                           .+....|+.+|.+.+.+++.++.+.   +++++.++||.+.++......          
T Consensus       185 ---------------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~  243 (299)
T 3t7c_A          185 ---------------------AENIGNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPMLLNEPTYRMFRPDLE  243 (299)
T ss_dssp             ---------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHCTTSS
T ss_pred             ---------------------CCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCccCccccccchhhhhhhhhc
Confidence                                 1224579999999999999988775   799999999999988543200          


Q ss_pred             CccHHHHHHHH-hCCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          208 AGSVRSSLALI-LGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       208 ~~~~~~~~~~~-~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ........... ......      ..+...+|+|+++++++....   .|..++++|+
T Consensus       244 ~~~~~~~~~~~~~~~~~p------~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG  295 (299)
T 3t7c_A          244 NPTVEDFQVASRQMHVLP------IPYVEPADISNAILFLVSDDARYITGVSLPVDGG  295 (299)
T ss_dssp             SCCHHHHHHHHHHHSSSS------CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             cchhhHHHHHhhhhcccC------cCCCCHHHHHHHHHHHhCcccccCcCCEEeeCCC
Confidence            00000000000 000000      267899999999999997653   2446677654

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=99.89  E-value=7e-23  Score=174.30  Aligned_cols=220  Identities=15%  Similarity=0.065  Sum_probs=154.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+.     +..... ..+..   ...++.++.+|+.|.+++.++++ 
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~~~~~~~~  103 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKP-----GSTAAVQQRIIA---SGGTAQELAGDLSEAGAGTDLIER  103 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESST-----TTTHHHHHHHHH---TTCCEEEEECCTTSTTHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH-----HHHHHHHHHHHh---cCCeEEEEEecCCCHHHHHHHHHH
Confidence            457899999999999999999999999999999987     232222 22211   12578999999999998888775 


Q ss_pred             -----CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCc
Q 020104           82 -----GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                           ++|++||+||....      ..+++ +..+++|+.++.++++++.    +.+ ..++|++||...+.  .     
T Consensus       104 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~Iv~isS~~~~~--~-----  174 (275)
T 4imr_A          104 AEAIAPVDILVINASAQINATLSALTPNDL-AFQLAVNLGSTVDMLQSALPKMVARK-WGRVVSIGSINQLR--P-----  174 (275)
T ss_dssp             HHHHSCCCEEEECCCCCCCBCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS--C-----
T ss_pred             HHHhCCCCEEEECCCCCCCCCcccCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECCHHhCC--C-----
Confidence                 68999999986432      11223 3788999999999998874    344 57999999977652  0     


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE  223 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  223 (331)
                                     .++...|+.+|.+.+.+++.++.+.   +++++.++||.+.++......... ............
T Consensus       175 ---------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~-~~~~~~~~~~~~  238 (275)
T 4imr_A          175 ---------------KSVVTAYAATKAAQHNLIQSQARDFAGDNVLLNTLAPGLVDTDRNADRRAQD-PEGWDEYVRTLN  238 (275)
T ss_dssp             ---------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHHHHHHHHC-HHHHHHHHHHHS
T ss_pred             ---------------CCCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEEeccccCcccccccccC-hHHHHHHHhhcC
Confidence                           1224579999999999999988775   799999999999876311000000 000111110000


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      .+     ..+...+|+|+++++++....   .|..++++|+
T Consensus       239 p~-----~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG  274 (275)
T 4imr_A          239 WM-----GRAGRPEEMVGAALFLASEACSFMTGETIFLTGG  274 (275)
T ss_dssp             TT-----CSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESSC
T ss_pred             cc-----CCCcCHHHHHHHHHHHcCcccCCCCCCEEEeCCC
Confidence            12     256789999999999998643   2445667553

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=99.89  E-value=1.1e-22  Score=173.62  Aligned_cols=232  Identities=15%  Similarity=0.106  Sum_probs=155.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcc-----cCCcccccccc-CCCCCCCcEEEEeCCCCCCccHH
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPE-----HRNSKDLSFLK-NLPGASERLRIFHADLSHPDGFD   77 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~D~~~~~~~~   77 (331)
                      .+|++|||||+|+||+++++.|+++|++|++++|+.....     ....+.+.... .+.....++.++.+|+.|.+++.
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~   89 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDRLR   89 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence            3578999999999999999999999999999998531000     00112221111 11112357899999999999888


Q ss_pred             HHhc-------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecC
Q 020104           78 AAIA-------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYN  140 (331)
Q Consensus        78 ~~~~-------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~  140 (331)
                      ++++       ++|++||+||.....      .+++ +..+++|+.++.++++++..    .+...++|++||...+.. 
T Consensus        90 ~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~-  167 (277)
T 3tsc_A           90 KVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDF-RDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMKM-  167 (277)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSC-
T ss_pred             HHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHH-HHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhCCC-
Confidence            8764       589999999865422      1223 37899999999999887543    221359999999876521 


Q ss_pred             CCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHH
Q 020104          141 DKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLAL  217 (331)
Q Consensus       141 ~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~  217 (331)
                                           .+....|+.+|.+.+.+.+.++.+.   +++++.++||.+.++.....   ........
T Consensus       168 ---------------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~---~~~~~~~~  223 (277)
T 3tsc_A          168 ---------------------QPFMIHYTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMGSGD---MVTAVGQA  223 (277)
T ss_dssp             ---------------------CSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSGGGSHH---HHHHHHHH
T ss_pred             ---------------------CCCchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeCCCcCCcccch---hhhhhhhc
Confidence                                 1224579999999999999988775   79999999999987742210   01111111


Q ss_pred             HhCCCc---ccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          218 ILGNRE---EYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       218 ~~~~~~---~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ....+.   .+.......+.+.+|+|+++++++..+.   .|..++++++
T Consensus       224 ~~~~~~~~~~~~~~~p~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG  273 (277)
T 3tsc_A          224 METNPQLSHVLTPFLPDWVAEPEDIADTVCWLASDESRKVTAAQIPVDQG  273 (277)
T ss_dssp             HHTCGGGTTTTCCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             ccccHHHHHHhhhccCCCCCCHHHHHHHHHHHhCccccCCcCCEEeeCCC
Confidence            111111   1111111258899999999999997653   2446677664

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=99.89  E-value=6.5e-23  Score=174.50  Aligned_cols=228  Identities=15%  Similarity=0.072  Sum_probs=157.5

Q ss_pred             CCceEEEecCc--chhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGGT--GFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      .+|+||||||+  |+||++++++|+++|++|++++|+.     ...+.++.+.+.   ...+.++.+|+.|.+++.++++
T Consensus        13 ~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~   84 (271)
T 3ek2_A           13 DGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGD-----RFKDRITEFAAE---FGSELVFPCDVADDAQIDALFA   84 (271)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSG-----GGHHHHHHHHHH---TTCCCEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecch-----hhHHHHHHHHHH---cCCcEEEECCCCCHHHHHHHHH
Confidence            46899999999  9999999999999999999999985     333333333221   1357889999999998888775


Q ss_pred             -------CccEEEEecccCCC----------CCCChhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCC
Q 020104           82 -------GCTGVLHVATPVDF----------EDKEPEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        82 -------~~d~Vih~a~~~~~----------~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~  143 (331)
                             ++|++||+||....          ...+..+..+++|+.++.++++++...- ...++|++||...+..    
T Consensus        85 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~----  160 (271)
T 3ek2_A           85 SLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERA----  160 (271)
T ss_dssp             HHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTSB----
T ss_pred             HHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEeccccccC----
Confidence                   68999999986532          1111223788999999999999987652 1358999999776531    


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhC
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILG  220 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~  220 (331)
                                        .++...|+.+|.+.+.+.+.++.+.   +++++.++||.+.++.....  ............
T Consensus       161 ------------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~--~~~~~~~~~~~~  220 (271)
T 3ek2_A          161 ------------------IPNYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGI--KSFGKILDFVES  220 (271)
T ss_dssp             ------------------CTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCC-----CCC--HHHHHHHHHHHH
T ss_pred             ------------------CCCccchhHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccchhhhcc--cchHHHHHHHHh
Confidence                              1224579999999999999888764   79999999999988743321  111111111111


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCCC--C-CceEEEec-cccCHHHHH
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYPD--A-KGRYICSS-HTLTIQEMA  269 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~-~~~~~~~~-~~~s~~e~~  269 (331)
                       ....     ..+...+|+|+++++++....  . |..+++++ ..+++.+++
T Consensus       221 -~~~~-----~~~~~pedva~~i~~l~s~~~~~~tG~~i~vdgG~~~~~~~~~  267 (271)
T 3ek2_A          221 -NSPL-----KRNVTIEQVGNAGAFLLSDLASGVTAEVMHVDSGFNAVVGGMA  267 (271)
T ss_dssp             -HSTT-----SSCCCHHHHHHHHHHHHSGGGTTCCSEEEEESTTGGGBCCCC-
T ss_pred             -cCCc-----CCCCCHHHHHHHHHHHcCcccCCeeeeEEEECCCeeeehhhhh
Confidence             1111     267899999999999998543  3 44667754 455555544

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=99.89  E-value=1.5e-21  Score=167.41  Aligned_cols=230  Identities=14%  Similarity=0.087  Sum_probs=156.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcc--------cCCcccccccc-CCCCCCCcEEEEeCCCCCCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPE--------HRNSKDLSFLK-NLPGASERLRIFHADLSHPD   74 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~-~~~~~~~~~~~~~~D~~~~~   74 (331)
                      .+|++|||||+|+||+++++.|++.|++|++++|+.+...        ....+.+..+. .+.....++.++.+|+.|.+
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~   89 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRDYD   89 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCCHH
Confidence            3578999999999999999999999999999999742110        01112222211 11122357899999999999


Q ss_pred             cHHHHhc-------CccEEEEecccCCCC-------CCChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccce
Q 020104           75 GFDAAIA-------GCTGVLHVATPVDFE-------DKEPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAA  136 (331)
Q Consensus        75 ~~~~~~~-------~~d~Vih~a~~~~~~-------~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~  136 (331)
                      ++.++++       ++|++||+||.....       .+++ +..+++|+.++.++++++...    +...++|++||...
T Consensus        90 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~-~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~  168 (286)
T 3uve_A           90 ALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDW-TEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVGG  168 (286)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECchhh
Confidence            8888775       699999999965422       1223 378999999999999987643    21359999999776


Q ss_pred             eecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCC------
Q 020104          137 VFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKF------  207 (331)
Q Consensus       137 ~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~------  207 (331)
                      +..                      .+....|+.+|.+.+.+.+.++.+   ++++++.++||.+.++......      
T Consensus       169 ~~~----------------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~  226 (286)
T 3uve_A          169 LKA----------------------YPHTGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPMLHNEGTFKMFR  226 (286)
T ss_dssp             TSC----------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSTTTSSHHHHHHHC
T ss_pred             ccC----------------------CCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCCcccccchhhhcc
Confidence            531                      122457999999999999998877   4799999999999987543200      


Q ss_pred             ----CccHHHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          208 ----AGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       208 ----~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                          ............... ..+    ..+.+.+|+|+++++++....   .|..++++++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~-~~p----~r~~~p~dvA~~v~fL~s~~a~~itG~~i~vdGG  282 (286)
T 3uve_A          227 PDLENPGPDDMAPICQMFH-TLP----IPWVEPIDISNAVLFFASDEARYITGVTLPIDAG  282 (286)
T ss_dssp             TTSSSCCHHHHHHHHHTTC-SSS----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             ccccccchhhHHHHHHhhh-ccC----CCcCCHHHHHHHHHHHcCccccCCcCCEEeECCc
Confidence                000000000000000 010    378899999999999997543   2446677654

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.89  E-value=3.4e-22  Score=166.48  Aligned_cols=186  Identities=15%  Similarity=0.155  Sum_probs=139.4

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      +|+||||||+|+||++++++|+++|++|++++|+..     ...            ....++.+|+.|.+++.++++   
T Consensus         3 ~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~-----~~~------------~~~~~~~~D~~~~~~~~~~~~~~~   65 (236)
T 1ooe_A            3 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN-----DQA------------DSNILVDGNKNWTEQEQSILEQTA   65 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC-----TTS------------SEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCcc-----ccc------------cccEEEeCCCCCHHHHHHHHHHHH
Confidence            478999999999999999999999999999999872     110            135677899999988877764   


Q ss_pred             ------CccEEEEecccCCCCC---C---ChhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCCCCccc
Q 020104           82 ------GCTGVLHVATPVDFED---K---EPEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~~---~---~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                            ++|+|||+||......   .   +..+..+++|+.++.++++++...- ...++|++||...+..         
T Consensus        66 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~---------  136 (236)
T 1ooe_A           66 SSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGP---------  136 (236)
T ss_dssp             HHHTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSC---------
T ss_pred             HHhCCCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhccC---------
Confidence                  6899999999643211   1   1123788899999999999988641 0259999999876521         


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcC-----CcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHG-----LDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE  223 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~-----~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  223 (331)
                                   .++...|+.+|.+.+.+++.++.+.+     +++++++||.+.++..            ...... .
T Consensus       137 -------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~------------~~~~~~-~  190 (236)
T 1ooe_A          137 -------------TPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPMN------------RKWMPN-A  190 (236)
T ss_dssp             -------------CTTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHHH------------HHHSTT-C
T ss_pred             -------------CCCcHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCcccCcch------------hhcCCC-c
Confidence                         12345799999999999999887654     9999999999987621            111111 1


Q ss_pred             ccccCCCccceeHHHHHHHHHHhh
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLL  247 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~  247 (331)
                      .+     ..++..+|+|++++.++
T Consensus       191 ~~-----~~~~~~~dvA~~i~~~l  209 (236)
T 1ooe_A          191 DH-----SSWTPLSFISEHLLKWT  209 (236)
T ss_dssp             CG-----GGCBCHHHHHHHHHHHH
T ss_pred             cc-----cccCCHHHHHHHHHHHH
Confidence            11     25678899999999666

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=99.89  E-value=2.6e-22  Score=172.38  Aligned_cols=218  Identities=12%  Similarity=0.017  Sum_probs=153.4

Q ss_pred             CceEEEecCcch--hHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            5 KGRVCVTGGTGF--IASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         5 ~~~ilVtGatG~--iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      +|++|||||+|+  ||+++++.|++.|++|++++|+.     ...+....+.+.   ..++.++.+|+.|.+++.++++ 
T Consensus        31 gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~  102 (293)
T 3grk_A           31 GKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGD-----ALKKRVEPLAEE---LGAFVAGHCDVADAASIDAVFET  102 (293)
T ss_dssp             TCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSH-----HHHHHHHHHHHH---HTCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCH-----HHHHHHHHHHHh---cCCceEEECCCCCHHHHHHHHHH
Confidence            578999999988  99999999999999999999985     222222222111   1357899999999998888775 


Q ss_pred             ------CccEEEEecccCC----------CCCCChhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCCC
Q 020104           82 ------GCTGVLHVATPVD----------FEDKEPEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 ------~~d~Vih~a~~~~----------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~  144 (331)
                            ++|++||+||...          ....++ +..+++|+.++.++++++...- ...++|++||...+..     
T Consensus       103 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~-----  176 (293)
T 3grk_A          103 LEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANF-TNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEKV-----  176 (293)
T ss_dssp             HHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTSB-----
T ss_pred             HHHhcCCCCEEEECCccCCcccccccccccCHHHH-HHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhccC-----
Confidence                  6899999999653          111223 3789999999999999987642 1359999999876531     


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                                       .+....|+.+|.+.+.+++.++.+.   +++++.++||.+.++..... . ........... 
T Consensus       177 -----------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~-~-~~~~~~~~~~~-  236 (293)
T 3grk_A          177 -----------------MPNYNVMGVAKAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAASGI-G-DFRYILKWNEY-  236 (293)
T ss_dssp             -----------------CTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC-------C-CHHHHHHHHHH-
T ss_pred             -----------------CCchHHHHHHHHHHHHHHHHHHHHHhHhCCEEEEEecCCCcchhhhcc-c-chHHHHHHHHh-
Confidence                             1224579999999999999988764   79999999999988753321 1 11111111111 


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCC--C-CceEEEecc
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPD--A-KGRYICSSH  261 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~-~~~~~~~~~  261 (331)
                      ...+     ..+...+|+|+++++++....  . |..+++++.
T Consensus       237 ~~p~-----~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG  274 (293)
T 3grk_A          237 NAPL-----RRTVTIDEVGDVGLYFLSDLSRSVTGEVHHADSG  274 (293)
T ss_dssp             HSTT-----SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             cCCC-----CCCCCHHHHHHHHHHHcCccccCCcceEEEECCC
Confidence            1112     267899999999999998543  2 446677654

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=99.89  E-value=8.1e-23  Score=176.28  Aligned_cols=211  Identities=18%  Similarity=0.142  Sum_probs=146.2

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      +|+||||||+|+||++++++|+++|++|++++|+.     +..+.. +.+..   ...++.++.+|+.|.+++.++++  
T Consensus        31 gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~-----~~~~~~~~~l~~---~~~~~~~~~~Dv~d~~~v~~~~~~~  102 (301)
T 3tjr_A           31 GRAAVVTGGASGIGLATATEFARRGARLVLSDVDQ-----PALEQAVNGLRG---QGFDAHGVVCDVRHLDEMVRLADEA  102 (301)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHHh---cCCceEEEEccCCCHHHHHHHHHHH
Confidence            46899999999999999999999999999999987     222221 11111   12578999999999998888775  


Q ss_pred             -----CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCCc
Q 020104           82 -----GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                           ++|+|||+||....      ..+++ +..+++|+.++.++++++..    .+...++|++||...+..       
T Consensus       103 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~-------  174 (301)
T 3tjr_A          103 FRLLGGVDVVFSNAGIVVAGPLAQMNHDDW-RWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVP-------  174 (301)
T ss_dssp             HHHHSSCSEEEECCCCCCCBCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSC-------
T ss_pred             HHhCCCCCEEEECCCcCCCCCcccCCHHHH-HHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCC-------
Confidence                 78999999996542      11223 37899999999999998753    221359999999776531       


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHH---HHHhC
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSL---ALILG  220 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~---~~~~~  220 (331)
                                     .++...|+.+|.+.+.+++.++.+.   ++++++++||.+.++....     .....   .....
T Consensus       175 ---------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~-----~~~~~~~~~~~~~  234 (301)
T 3tjr_A          175 ---------------NAGLGTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVETKLVSN-----SERIRGADYGMSA  234 (301)
T ss_dssp             ---------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEECCSCCCSSHHHH-----HHHHC--------
T ss_pred             ---------------CCCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCccccccccc-----cccccchhhcccc
Confidence                           1234589999999999999888765   7999999999997763110     00000   00000


Q ss_pred             CC-cccccC-CCccceeHHHHHHHHHHhhcCCC
Q 020104          221 NR-EEYGFL-LNTSMVHVDDVARAHIFLLEYPD  251 (331)
Q Consensus       221 ~~-~~~~~~-~~~~~i~v~D~a~~~~~~~~~~~  251 (331)
                      .+ ..+... ....+++++|+|++++.++.++.
T Consensus       235 ~~~~~~~~~~~~~~~~~pedvA~~i~~~l~~~~  267 (301)
T 3tjr_A          235 TPEGAFGPLPTQDESVSADDVARLTADAILANR  267 (301)
T ss_dssp             --------------CCCHHHHHHHHHHHHHHTC
T ss_pred             ChhhhccccccccCCCCHHHHHHHHHHHHhcCC
Confidence            00 111111 11368999999999999998763

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=99.89  E-value=9.4e-23  Score=170.87  Aligned_cols=206  Identities=17%  Similarity=0.128  Sum_probs=133.0

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCcc---HH
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDG---FD   77 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~---~~   77 (331)
                      |+..+|++|||||+|+||++++++|++ |++|++++|+.     ...   ..+.+.    .++.++.+|+.+..+   +.
T Consensus         1 m~l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~-----~~~---~~~~~~----~~~~~~~~D~~~~~~~~~~~   67 (245)
T 3e9n_A            1 MSLKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNP-----EHL---AALAEI----EGVEPIESDIVKEVLEEGGV   67 (245)
T ss_dssp             -----CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCH-----HHH---HHHHTS----TTEEEEECCHHHHHHTSSSC
T ss_pred             CCCCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCH-----HHH---HHHHhh----cCCcceecccchHHHHHHHH
Confidence            666678999999999999999999987 89999999987     222   222221    468899999987632   22


Q ss_pred             HHh---cCccEEEEecccCCCCC------CChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCC
Q 020104           78 AAI---AGCTGVLHVATPVDFED------KEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        78 ~~~---~~~d~Vih~a~~~~~~~------~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                      +.+   .++|+|||+||......      .++ +..+++|+.++.++++++.    +.+  .++|++||...+..     
T Consensus        68 ~~~~~~~~id~lv~~Ag~~~~~~~~~~~~~~~-~~~~~~N~~~~~~l~~~~~~~~~~~~--g~iv~isS~~~~~~-----  139 (245)
T 3e9n_A           68 DKLKNLDHVDTLVHAAAVARDTTIEAGSVAEW-HAHLDLNVIVPAELSRQLLPALRAAS--GCVIYINSGAGNGP-----  139 (245)
T ss_dssp             GGGTTCSCCSEEEECC----------CHHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEC------------
T ss_pred             HHHHhcCCCCEEEECCCcCCCCchhhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEcCcccccC-----
Confidence            222   36899999998654221      122 3678999999888877764    333  69999999877631     


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                                       .++...|+.+|.+.+.+++.++.+   .++++++++||.+.++........         .+.
T Consensus       140 -----------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~---------~~~  193 (245)
T 3e9n_A          140 -----------------HPGNTIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPMLQGLMDS---------QGT  193 (245)
T ss_dssp             --------------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-----------------------
T ss_pred             -----------------CCCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCccCchhhhhhhh---------hhc
Confidence                             122458999999999999998876   479999999999988743211000         000


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCCCCceEEE
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPDAKGRYIC  258 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~  258 (331)
                      ..     ....+++++|+|+++++++..+..+.++++
T Consensus       194 ~~-----~~~~~~~p~dvA~~i~~l~~~~~~~~~~~i  225 (245)
T 3e9n_A          194 NF-----RPEIYIEPKEIANAIRFVIDAGETTQITNV  225 (245)
T ss_dssp             -------CCGGGSCHHHHHHHHHHHHTSCTTEEEEEE
T ss_pred             cc-----ccccCCCHHHHHHHHHHHHcCCCccceeee
Confidence            00     113688999999999999998877777765

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=99.89  E-value=2.3e-22  Score=170.77  Aligned_cols=219  Identities=16%  Similarity=0.155  Sum_probs=152.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      +|++|||||+|+||++++++|+++|++|++++|+.     +..+.+.  .++    .++.++.+|+.|.+++.++++   
T Consensus         9 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~--~~~----~~~~~~~~Dv~d~~~v~~~~~~~~   77 (270)
T 1yde_A            9 GKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDE-----SGGRALE--QEL----PGAVFILCDVTQEDDVKTLVSETI   77 (270)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHH--HHC----TTEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHH--HHh----cCCeEEEcCCCCHHHHHHHHHHHH
Confidence            47899999999999999999999999999999986     2222111  111    347889999999998888775   


Q ss_pred             ----CccEEEEecccCCCC-------CCChhhHHHHHHHHHHHHHHHHHHhc---CCccEEEEecccceeecCCCCCCcc
Q 020104           82 ----GCTGVLHVATPVDFE-------DKEPEEVITQRAINGTLGILKSCLKS---GTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 ----~~d~Vih~a~~~~~~-------~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                          ++|+|||+||.....       .+++ +..+++|+.++.++++++...   + ..++|++||...+...       
T Consensus        78 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~~~-~g~iv~isS~~~~~~~-------  148 (270)
T 1yde_A           78 RRFGRLDCVVNNAGHHPPPQRPEETSAQGF-RQLLELNLLGTYTLTKLALPYLRKS-QGNVINISSLVGAIGQ-------  148 (270)
T ss_dssp             HHHSCCCEEEECCCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECCHHHHHCC-------
T ss_pred             HHcCCCCEEEECCCCCCCCCCcccCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHHC-CCEEEEEcCccccCCC-------
Confidence                689999999864321       1122 378899999999999988642   2 3699999997654211       


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCC---CCCccHHHHHHHHhCC
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICP---KFAGSVRSSLALILGN  221 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~---~~~~~~~~~~~~~~~~  221 (331)
                                     +....|+.+|.+.+.+++.++.+   +++++++++||.++++....   ............... 
T Consensus       149 ---------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~-  212 (270)
T 1yde_A          149 ---------------AQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLA-  212 (270)
T ss_dssp             ---------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHT-
T ss_pred             ---------------CCCcccHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCccccchhhhhhhcccchHHHHHHHhhc-
Confidence                           12457999999999999998876   48999999999999873110   000110011111111 


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCC-CC-CceEEEecc-ccCH
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYP-DA-KGRYICSSH-TLTI  265 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~-~~-~~~~~~~~~-~~s~  265 (331)
                       ..+     ..+.+.+|+|+++++++... .. |..+.+++. .+.+
T Consensus       213 -~p~-----~r~~~p~dva~~v~~L~s~~~~itG~~i~vdGG~~~~~  253 (270)
T 1yde_A          213 -QPL-----GRMGQPAEVGAAAVFLASEANFCTGIELLVTGGAELGY  253 (270)
T ss_dssp             -STT-----SSCBCHHHHHHHHHHHHHHCTTCCSCEEEESTTTTSCC
T ss_pred             -CCC-----CCCcCHHHHHHHHHHHcccCCCcCCCEEEECCCeeccc
Confidence             111     25789999999999998752 22 445667553 4443

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=99.89  E-value=1.7e-22  Score=167.62  Aligned_cols=196  Identities=17%  Similarity=0.151  Sum_probs=141.4

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc-
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC-   83 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-   83 (331)
                      ||+||||||+|+||++++++|+++|++|++++|+.     +..+....  ++   ..++.++.+|+.|.+++.++++.+ 
T Consensus         1 Mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~-----~~~~~~~~--~~---~~~~~~~~~D~~~~~~v~~~~~~~~   70 (230)
T 3guy_A            1 MSLIVITGASSGLGAELAKLYDAEGKATYLTGRSE-----SKLSTVTN--CL---SNNVGYRARDLASHQEVEQLFEQLD   70 (230)
T ss_dssp             --CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCH-----HHHHHHHH--TC---SSCCCEEECCTTCHHHHHHHHHSCS
T ss_pred             CCEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHH--HH---hhccCeEeecCCCHHHHHHHHHHHh
Confidence            46899999999999999999999999999999987     22222111  11   246788999999999999988653 


Q ss_pred             ---cEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhcC--CccEEEEecccceeecCCCCCCcccCCCC
Q 020104           84 ---TGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKSG--TVKRVVYTSSNAAVFYNDKDVDMMDETFW  152 (331)
Q Consensus        84 ---d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~E~~~  152 (331)
                         |+|||+||.....      .+++ +..+++|+.++.++++++...-  ...++|++||...+..             
T Consensus        71 ~~~d~lv~~Ag~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~-------------  136 (230)
T 3guy_A           71 SIPSTVVHSAGSGYFGLLQEQDPEQI-QTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQP-------------  136 (230)
T ss_dssp             SCCSEEEECCCCCCCSCGGGSCHHHH-HHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTSC-------------
T ss_pred             hcCCEEEEeCCcCCCCccccCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCCC-------------
Confidence               9999999865421      1123 3788999999999999887541  1239999999876531             


Q ss_pred             CChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCC
Q 020104          153 SDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLL  229 (331)
Q Consensus       153 ~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (331)
                               .++...|+.+|.+.+.+.+.++.+.   +++++.++||.+..+.....             .....     
T Consensus       137 ---------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-------------~~~~~-----  189 (230)
T 3guy_A          137 ---------KAQESTYCAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMATEFWETS-------------GKSLD-----  189 (230)
T ss_dssp             ---------CTTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEECCC-------------------------------
T ss_pred             ---------CCCCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEECCcccChHHHhc-------------CCCCC-----
Confidence                     1234589999999999999998876   79999999999977632110             00011     


Q ss_pred             CccceeHHHHHHHHHHhhcCCC
Q 020104          230 NTSMVHVDDVARAHIFLLEYPD  251 (331)
Q Consensus       230 ~~~~i~v~D~a~~~~~~~~~~~  251 (331)
                      ...+++.+|+|+++++++.++.
T Consensus       190 ~~~~~~~~dvA~~i~~l~~~~~  211 (230)
T 3guy_A          190 TSSFMSAEDAALMIHGALANIG  211 (230)
T ss_dssp             ---CCCHHHHHHHHHHHCCEET
T ss_pred             cccCCCHHHHHHHHHHHHhCcC
Confidence            1378899999999999987654

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=99.89  E-value=5.2e-22  Score=165.91  Aligned_cols=199  Identities=14%  Similarity=0.091  Sum_probs=146.0

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      +|+||||||+|+||++++++|+++|++|++++|+..     ...            ....++.+|+.|.+++.++++   
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~-----~~~------------~~~~~~~~D~~~~~~v~~~~~~~~   69 (241)
T 1dhr_A            7 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN-----EEA------------SASVIVKMTDSFTEQADQVTAEVG   69 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC-----TTS------------SEEEECCCCSCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChh-----hcc------------CCcEEEEcCCCCHHHHHHHHHHHH
Confidence            578999999999999999999999999999999872     110            135678899999988887764   


Q ss_pred             ------CccEEEEecccCCCC---CC---ChhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCCCCccc
Q 020104           82 ------GCTGVLHVATPVDFE---DK---EPEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~---~~---~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                            ++|+|||+||.....   ..   +..+..+++|+.++.++++++...- ...++|++||...+..         
T Consensus        70 ~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~---------  140 (241)
T 1dhr_A           70 KLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDG---------  140 (241)
T ss_dssp             HHHTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSC---------
T ss_pred             HHhCCCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHccC---------
Confidence                  689999999965321   11   1123678899999999999987641 0259999999876531         


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc-----CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH-----GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE  223 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~-----~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  223 (331)
                                   .++...|+.+|.+.+.+++.++.+.     ++++++++||.+..+.            ...... ..
T Consensus       141 -------------~~~~~~Y~asK~a~~~~~~~la~e~~~~~~gi~v~~v~PG~v~T~~------------~~~~~~-~~  194 (241)
T 1dhr_A          141 -------------TPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPM------------NRKSMP-EA  194 (241)
T ss_dssp             -------------CTTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHH------------HHHHST-TS
T ss_pred             -------------CCCchHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCcccCcc------------ccccCc-ch
Confidence                         1224579999999999999988754     5999999999987652            111111 11


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEec
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSS  260 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~  260 (331)
                      .+     ..++..+|+|+++++++....   .|..+.+.+
T Consensus       195 ~~-----~~~~~~~~vA~~v~~l~~~~~~~~~G~~~~v~g  229 (241)
T 1dhr_A          195 DF-----SSWTPLEFLVETFHDWITGNKRPNSGSLIQVVT  229 (241)
T ss_dssp             CG-----GGSEEHHHHHHHHHHHHTTTTCCCTTCEEEEEE
T ss_pred             hh-----ccCCCHHHHHHHHHHHhcCCCcCccceEEEEeC
Confidence            11     256789999999999997543   244555543

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=99.89  E-value=2.8e-22  Score=166.71  Aligned_cols=196  Identities=21%  Similarity=0.184  Sum_probs=143.4

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      +|++|||||+|+||++++++|+++|++|++++|+.     +..+.....  +   ..++.++.+|+.|.+++.++++   
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~-----~~~~~~~~~--~---~~~~~~~~~D~~~~~~v~~~~~~~~   72 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRY-----QRLQQQELL--L---GNAVIGIVADLAHHEDVDVAFAAAV   72 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHH--H---GGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHH--h---cCCceEEECCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999999999999987     222222111  1   1358899999999998887765   


Q ss_pred             ----CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHhc--CCccEEEEecccceeecCCCCCCcccC
Q 020104           82 ----GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLKS--GTVKRVVYTSSNAAVFYNDKDVDMMDE  149 (331)
Q Consensus        82 ----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~~~~E  149 (331)
                          ++|++||+||....      ..+++ +..+++|+.++..+++++...  ..-.++|++||...+..          
T Consensus        73 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~----------  141 (235)
T 3l6e_A           73 EWGGLPELVLHCAGTGEFGPVGVYTAEQI-RRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQVG----------  141 (235)
T ss_dssp             HHHCSCSEEEEECCCC------CCCHHHH-HHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECCSS----------
T ss_pred             HhcCCCcEEEECCCCCCCCChHhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhcCC----------
Confidence                68999999996542      11223 378999999998888887542  10139999999765531          


Q ss_pred             CCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccc
Q 020104          150 TFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYG  226 (331)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (331)
                                  .+....|+.+|.+.+.+.+.++.+.   +++++.++||.+..+.....        .    .  ..  
T Consensus       142 ------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~--------~----~--~~--  193 (235)
T 3l6e_A          142 ------------KANESLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEFWDNT--------D----H--VD--  193 (235)
T ss_dssp             ------------CSSHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEEECCCC------------------------
T ss_pred             ------------CCCCcHHHHHHHHHHHHHHHHHHHhhccCCEEEEEeCCCccCcchhcc--------C----C--CC--
Confidence                        1224579999999999999998864   79999999999976632110        0    0  00  


Q ss_pred             cCCCccceeHHHHHHHHHHhhcCCCC
Q 020104          227 FLLNTSMVHVDDVARAHIFLLEYPDA  252 (331)
Q Consensus       227 ~~~~~~~i~v~D~a~~~~~~~~~~~~  252 (331)
                         ...++..+|+|+++++++.++..
T Consensus       194 ---~~~~~~pedvA~~v~~l~~~~~~  216 (235)
T 3l6e_A          194 ---PSGFMTPEDAAAYMLDALEARSS  216 (235)
T ss_dssp             ------CBCHHHHHHHHHHHTCCCSS
T ss_pred             ---CcCCCCHHHHHHHHHHHHhCCCC
Confidence               02678999999999999986643

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=99.88  E-value=5.6e-23  Score=173.78  Aligned_cols=223  Identities=13%  Similarity=0.136  Sum_probs=150.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccccccc-CCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLK-NLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|++|||||+|+||++++++|+++|++|+++.|..     ...+.++.+. ++.....++.++.+|+.|.+++.++++ 
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~   84 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQA-----KDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDF   84 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCG-----GGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCc-----cCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence            347899999999999999999999999999998865     2222222221 111223578899999999998888775 


Q ss_pred             ------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhc--CCccEEEEecccceeecCCCCCCcc
Q 020104           82 ------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKS--GTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                            ++|++||+||.....      .+++ +..+++|+.++.++++++...  + ..++|++||...+...       
T Consensus        85 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~m~~-~g~iv~isS~~~~~~~-------  155 (262)
T 3ksu_A           85 AEKEFGKVDIAINTVGKVLKKPIVETSEAEF-DAMDTINNKVAYFFIKQAAKHMNP-NGHIITIATSLLAAYT-------  155 (262)
T ss_dssp             HHHHHCSEEEEEECCCCCCSSCGGGCCHHHH-HHHHHHHHHHHHHHHHHHHTTEEE-EEEEEEECCCHHHHHH-------
T ss_pred             HHHHcCCCCEEEECCCCCCCCCcccCCHHHH-HHHHHHHhHHHHHHHHHHHHhhcC-CCEEEEEechhhccCC-------
Confidence                  689999999965421      1122 377889999999999999875  3 4699999998766321       


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcc
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREE  224 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~  224 (331)
                                     +....|+.+|.+.+.+++.++.+.   +++++.+.||.+..+.........   .... ......
T Consensus       156 ---------------~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~---~~~~-~~~~~~  216 (262)
T 3ksu_A          156 ---------------GFYSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSFFYGQETKE---STAF-HKSQAM  216 (262)
T ss_dssp             ---------------CCCCC-----CHHHHHHHHHHHHTTTTTCEEEEEEECCCCTHHHHTCC----------------C
T ss_pred             ---------------CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccccCchH---HHHH-HHhcCc
Confidence                           123469999999999999999876   799999999998765211100000   0000 000111


Q ss_pred             cccCCCccceeHHHHHHHHHHhhcCCC-C-CceEEEeccccC
Q 020104          225 YGFLLNTSMVHVDDVARAHIFLLEYPD-A-KGRYICSSHTLT  264 (331)
Q Consensus       225 ~~~~~~~~~i~v~D~a~~~~~~~~~~~-~-~~~~~~~~~~~s  264 (331)
                      .     ..+...+|+|+++++++.... . |..++++|+...
T Consensus       217 ~-----~r~~~pedvA~~v~~L~s~~~~itG~~i~vdGg~~~  253 (262)
T 3ksu_A          217 G-----NQLTKIEDIAPIIKFLTTDGWWINGQTIFANGGYTT  253 (262)
T ss_dssp             C-----CCSCCGGGTHHHHHHHHTTTTTCCSCEEEESTTCCC
T ss_pred             c-----cCCCCHHHHHHHHHHHcCCCCCccCCEEEECCCccC
Confidence            1     267889999999999998621 2 445678765443

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=99.88  E-value=3.8e-22  Score=167.29  Aligned_cols=201  Identities=19%  Similarity=0.286  Sum_probs=141.7

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc----
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA----   81 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----   81 (331)
                      |++|||||+|+||++++++|+++|++|++++|+.     +..+.+..  ++   ..++.++.+|+.|.+++.++++    
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~-----~~~~~~~~--~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~   70 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQ-----ERLQELKD--EL---GDNLYIAQLDVRNRAAIEEMLASLPA   70 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHH--HH---CTTEEEEECCTTCHHHHHHHHHTSCT
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHH--Hh---cCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            5799999999999999999999999999999986     22222111  11   1368899999999999988875    


Q ss_pred             ---CccEEEEecccCC-C------CCCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCcc
Q 020104           82 ---GCTGVLHVATPVD-F------EDKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 ---~~d~Vih~a~~~~-~------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                         ++|++||+||... .      ...++ +..+++|+.++.++++++.    +.+ ..++|++||...+..        
T Consensus        71 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~~~~--------  140 (248)
T 3asu_A           71 EWCNIDILVNNAGLALGMEPAHKASVEDW-ETMIDTNNKGLVYMTRAVLPGMVERN-HGHIINIGSTAGSWP--------  140 (248)
T ss_dssp             TTCCCCEEEECCCCCCCCSCGGGSCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTSC--------
T ss_pred             hCCCCCEEEECCCcCCCCCchhhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEEccchhccC--------
Confidence               6899999998642 1      11123 3789999999988888775    345 579999999775521        


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeC-CCCCCCCCccHHHHHHHHhCCCc
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVG-PFICPKFAGSVRSSLALILGNRE  223 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G-~~~~~~~~~~~~~~~~~~~~~~~  223 (331)
                                    .++...|+.+|...+.+++.++.+.   +++++.++||.+.| +......... .....      .
T Consensus       141 --------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~gT~~~~~~~~~~-~~~~~------~  199 (248)
T 3asu_A          141 --------------YAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGD-DGKAE------K  199 (248)
T ss_dssp             --------------CTTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECSBCC------------------------
T ss_pred             --------------CCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeccccccCcchhhcccCc-hHHHH------H
Confidence                          1224579999999999999988764   79999999999984 4321100000 00000      0


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      .+   ....++..+|+|+++++++..+
T Consensus       200 ~~---~~~~~~~p~dvA~~v~~l~s~~  223 (248)
T 3asu_A          200 TY---QNTVALTPEDVSEAVWWVSTLP  223 (248)
T ss_dssp             --------CCBCHHHHHHHHHHHHHSC
T ss_pred             HH---hccCCCCHHHHHHHHHHHhcCC
Confidence            00   0123469999999999999864

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=99.88  E-value=9.2e-22  Score=170.85  Aligned_cols=230  Identities=15%  Similarity=0.119  Sum_probs=155.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCccc----CCcccccccc-CCCCCCCcEEEEeCCCCCCccHHH
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEH----RNSKDLSFLK-NLPGASERLRIFHADLSHPDGFDA   78 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~D~~~~~~~~~   78 (331)
                      .+|++|||||+|+||+++++.|+++|++|++++|+......    ...+.+.... .+.....++.++.+|+.|.+++.+
T Consensus        45 ~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~  124 (317)
T 3oec_A           45 QGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASLQA  124 (317)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHH
Confidence            34789999999999999999999999999999887421100    0111111111 111123578899999999998888


Q ss_pred             Hhc-------CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCC
Q 020104           79 AIA-------GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYND  141 (331)
Q Consensus        79 ~~~-------~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~  141 (331)
                      +++       ++|++||+||....      ..+++ +..+++|+.++.++++++..    .+...++|++||...+..  
T Consensus       125 ~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~~~--  201 (317)
T 3oec_A          125 VVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQW-SDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLRG--  201 (317)
T ss_dssp             HHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGSSC--
T ss_pred             HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhcCC--
Confidence            775       68999999996542      11223 37889999999999888753    221358999999876531  


Q ss_pred             CCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCC---------CC-
Q 020104          142 KDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPK---------FA-  208 (331)
Q Consensus       142 ~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~---------~~-  208 (331)
                                          .+....|+.+|.+.+.+++.++.+.   +++++.++||.+.++.....         .. 
T Consensus       202 --------------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~  261 (317)
T 3oec_A          202 --------------------APGQSHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEMALNEKLLKMFLPHLEN  261 (317)
T ss_dssp             --------------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHCHHHHHHHCTTCSS
T ss_pred             --------------------CCCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCccccchhhhhhhhhhccc
Confidence                                1224579999999999999998874   89999999999988632110         00 


Q ss_pred             ccHHHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          209 GSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ........... .....    ...+++++|+|+++++++....   .|..++++++
T Consensus       262 ~~~~~~~~~~~-~~~~~----p~~~~~pedvA~av~fL~s~~a~~itG~~i~vdGG  312 (317)
T 3oec_A          262 PTREDAAELFS-QLTLL----PIPWVEPEDVSNAVAWLASDEARYIHGAAIPVDGG  312 (317)
T ss_dssp             CCHHHHHHHHT-TTCSS----SSSSBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred             cchhHHHHHHh-hhccC----CCCCCCHHHHHHHHHHHcCCcccCCCCCEEEECcc
Confidence            00000000000 10011    1478999999999999997543   2456777654

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=99.88  E-value=1.6e-21  Score=166.62  Aligned_cols=218  Identities=11%  Similarity=-0.006  Sum_probs=155.3

Q ss_pred             CceEEEecCcch--hHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            5 KGRVCVTGGTGF--IASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         5 ~~~ilVtGatG~--iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      +|+||||||+|+  ||+++++.|+++|++|++++|+.      ..+.++.+.+.   ..++.++.+|+.|.+++.++++ 
T Consensus        26 ~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~------~~~~~~~l~~~---~~~~~~~~~Dl~~~~~v~~~~~~   96 (280)
T 3nrc_A           26 GKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ------FKDRVEKLCAE---FNPAAVLPCDVISDQEIKDLFVE   96 (280)
T ss_dssp             TCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT------CHHHHHHHHGG---GCCSEEEECCTTCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch------HHHHHHHHHHh---cCCceEEEeecCCHHHHHHHHHH
Confidence            578999999977  99999999999999999999986      22233333221   1357899999999998888774 


Q ss_pred             ------CccEEEEecccCCC----------CCCChhhHHHHHHHHHHHHHHHHHHhcC--CccEEEEecccceeecCCCC
Q 020104           82 ------GCTGVLHVATPVDF----------EDKEPEEVITQRAINGTLGILKSCLKSG--TVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~----------~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~  143 (331)
                            ++|+|||+||....          ...+..+..+++|+.++.++++++...-  ...++|++||...+..    
T Consensus        97 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~----  172 (280)
T 3nrc_A           97 LGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEKA----  172 (280)
T ss_dssp             HHHHCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTSC----
T ss_pred             HHHHcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeccccccC----
Confidence                  57999999997542          1111223688999999999999887541  1469999999776531    


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhC
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILG  220 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~  220 (331)
                                        .++...|+.+|.+.+.+++.++.+   .+++++.++||.+.++......  ...........
T Consensus       173 ------------------~~~~~~Y~asKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~--~~~~~~~~~~~  232 (280)
T 3nrc_A          173 ------------------MPSYNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAASGIS--NFKKMLDYNAM  232 (280)
T ss_dssp             ------------------CTTTHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCSGGGGCT--THHHHHHHHHH
T ss_pred             ------------------CCCchhhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeccccchhhhcCc--chHHHHHHHHh
Confidence                              123458999999999999988876   4799999999999987533211  11111111111


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                       ....     ..+...+|+|+++++++....   .|..++++++
T Consensus       233 -~~p~-----~~~~~pedvA~~v~~l~s~~~~~~tG~~i~vdgG  270 (280)
T 3nrc_A          233 -VSPL-----KKNVDIMEVGNTVAFLCSDMATGITGEVVHVDAG  270 (280)
T ss_dssp             -HSTT-----CSCCCHHHHHHHHHHTTSGGGTTCCSCEEEESTT
T ss_pred             -cCCC-----CCCCCHHHHHHHHHHHhCcccCCcCCcEEEECCC
Confidence             1111     267899999999999998543   3456677654

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=99.88  E-value=3.9e-22  Score=168.46  Aligned_cols=206  Identities=15%  Similarity=0.117  Sum_probs=143.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      ++|++|||||+|+||++++++|++.|++|++++|+.     +..+.. ..+..   ...++.++.+|+.|.+++.++++ 
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~-----~~~~~~~~~l~~---~~~~~~~~~~Dv~d~~~v~~~~~~   74 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQ-----ARIEAIATEIRD---AGGTALAQVLDVTDRHSVAAFAQA   74 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH-----HHHHHHHHHHHH---TTCEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHH
Confidence            357899999999999999999999999999999987     222221 11111   12568889999999998887764 


Q ss_pred             ------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|++||+||.....      ..++ +..+++|+.++..+++++.    +.+ ..++|++||...+..      
T Consensus        75 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~IV~isS~~~~~~------  146 (264)
T 3tfo_A           75 AVDTWGRIDVLVNNAGVMPLSPLAAVKVDEW-ERMIDVNIKGVLWGIGAVLPIMEAQR-SGQIINIGSIGALSV------  146 (264)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTCC------
T ss_pred             HHHHcCCCCEEEECCCCCCCCCcccCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhCC-CeEEEEEcCHHHccc------
Confidence                  689999999865421      1223 3788999999988887764    344 579999999876531      


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc-CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcc
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH-GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREE  224 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~-~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~  224 (331)
                                      .+....|+.+|.+.+.+.+.++.+. +++++.++||.+.++.........    .      ...
T Consensus       147 ----------------~~~~~~Y~asKaal~~l~~~la~e~~gIrvn~v~PG~v~T~~~~~~~~~~----~------~~~  200 (264)
T 3tfo_A          147 ----------------VPTAAVYCATKFAVRAISDGLRQESTNIRVTCVNPGVVESELAGTITHEE----T------MAA  200 (264)
T ss_dssp             ----------------CTTCHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEECCC--------------------------
T ss_pred             ----------------CCCChhHHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCcCcccccccchh----H------HHH
Confidence                            1224579999999999999988876 899999999999876422100000    0      000


Q ss_pred             cccCCCccceeHHHHHHHHHHhhcCCCC
Q 020104          225 YGFLLNTSMVHVDDVARAHIFLLEYPDA  252 (331)
Q Consensus       225 ~~~~~~~~~i~v~D~a~~~~~~~~~~~~  252 (331)
                      ... ....++..+|+|+++++++..+..
T Consensus       201 ~~~-~~~~~~~pedvA~~v~~l~s~~~~  227 (264)
T 3tfo_A          201 MDT-YRAIALQPADIARAVRQVIEAPQS  227 (264)
T ss_dssp             --------CCCHHHHHHHHHHHHHSCTT
T ss_pred             HHh-hhccCCCHHHHHHHHHHHhcCCcc
Confidence            000 001357899999999999988764

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=99.88  E-value=1.5e-22  Score=176.39  Aligned_cols=236  Identities=14%  Similarity=0.085  Sum_probs=161.9

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCC--cccCCccccccc-cCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELD--PEHRNSKDLSFL-KNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      +|++|||||+|+||+++++.|++.|++|++++|+...  ...........+ .++.....++.++.+|+.|.+++.++++
T Consensus        27 gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~  106 (322)
T 3qlj_A           27 GRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAGLIQ  106 (322)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence            4689999999999999999999999999999987200  000001111111 1111123568899999999998888775


Q ss_pred             -------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhcC---------CccEEEEecccceeec
Q 020104           82 -------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKSG---------TVKRVVYTSSNAAVFY  139 (331)
Q Consensus        82 -------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~~---------~~~~~v~~SS~~~~~~  139 (331)
                             ++|++||+||.....      ..++ +..+++|+.++.++++++...-         .-.++|++||...+..
T Consensus       107 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~-~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~  185 (322)
T 3qlj_A          107 TAVETFGGLDVLVNNAGIVRDRMIANTSEEEF-DAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAGLQG  185 (322)
T ss_dssp             HHHHHHSCCCEEECCCCCCCCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHC
T ss_pred             HHHHHcCCCCEEEECCCCCCCCCcccCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCHHHccC
Confidence                   789999999965421      1223 3789999999999999876431         0149999999776531


Q ss_pred             CCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHH
Q 020104          140 NDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLA  216 (331)
Q Consensus       140 ~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~  216 (331)
                      .                      +....|+.+|.+.+.+++.++.+   .+++++.++|| +..+...........    
T Consensus       186 ~----------------------~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG-~~t~~~~~~~~~~~~----  238 (322)
T 3qlj_A          186 S----------------------VGQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTRMTETVFAEMMA----  238 (322)
T ss_dssp             B----------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-TTSCCSCCSCCC-------
T ss_pred             C----------------------CCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEecCC-CCCccchhhhhhhhh----
Confidence            1                      22457999999999999998887   48999999999 655432221111100    


Q ss_pred             HHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEeccc------------------cCHHHHHHHHHhh
Q 020104          217 LILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSHT------------------LTIQEMAEFLSAK  275 (331)
Q Consensus       217 ~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~~------------------~s~~e~~~~i~~~  275 (331)
                          .     ....+.+++.+|+|+++++++....   .|..++++++.                  .++.|+++.+.+.
T Consensus       239 ----~-----~~~~~~~~~pedva~~v~~L~s~~~~~itG~~i~vdGG~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~  309 (322)
T 3qlj_A          239 ----T-----QDQDFDAMAPENVSPLVVWLGSAEARDVTGKVFEVEGGKIRVAEGWAHGPQIDKGARWDPAELGPVVADL  309 (322)
T ss_dssp             --------------CCTTCGGGTHHHHHHHTSGGGGGCCSCEEEEETTEEEEEECCEEEEEEECSSCCCGGGHHHHHHHH
T ss_pred             ----c-----cccccCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCccccCCCcccccccCccCCCCHHHHHHHHHHH
Confidence                0     0011356789999999999997543   24456665432                  2779999999887


Q ss_pred             CC
Q 020104          276 YP  277 (331)
Q Consensus       276 ~~  277 (331)
                      ++
T Consensus       310 ~~  311 (322)
T 3qlj_A          310 LG  311 (322)
T ss_dssp             HH
T ss_pred             hh
Confidence            76

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=99.88  E-value=7.9e-22  Score=165.33  Aligned_cols=209  Identities=17%  Similarity=0.161  Sum_probs=146.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      ++|++|||||+|+||++++++|+++|++|++++|+.     +..+.. +.+..   ...++.++.+|+.|++++.++++ 
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~-----~~~~~~~~~l~~---~~~~~~~~~~Dv~~~~~~~~~~~~   77 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGAAVAIAARRV-----EKLRALGDELTA---AGAKVHVLELDVADRQGVDAAVAS   77 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHHh---cCCcEEEEECCCCCHHHHHHHHHH
Confidence            357899999999999999999999999999999986     222211 11111   12468899999999998887764 


Q ss_pred             ------CccEEEEecccCCCC---CCC--hhhHHHHHHHHHHHHHHHHHHhcC--CccEEEEecccceeecCCCCCCccc
Q 020104           82 ------GCTGVLHVATPVDFE---DKE--PEEVITQRAINGTLGILKSCLKSG--TVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~---~~~--~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                            ++|++||+||.....   ..+  ..+..+++|+.++.++++++...-  .-.++|++||...+..         
T Consensus        78 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~---------  148 (247)
T 2jah_A           78 TVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSKGTVVQMSSIAGRVN---------  148 (247)
T ss_dssp             HHHHHSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTCC---------
T ss_pred             HHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEccHHhcCC---------
Confidence                  699999999865321   111  123688999999999999876431  0169999999765521         


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCccc
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEY  225 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  225 (331)
                                   .++...|+.+|.+.+.+.+.++.+.   ++++++++||.+.++.........   ........+   
T Consensus       149 -------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~---~~~~~~~~~---  209 (247)
T 2jah_A          149 -------------VRNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHITHTA---TKEMYEQRI---  209 (247)
T ss_dssp             -------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCCCHH---HHHHHHHHT---
T ss_pred             -------------CCCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCCCCCcchhcccchh---hHHHHHhcc---
Confidence                         1224579999999999999887764   899999999999887422111111   111111100   


Q ss_pred             ccCCCccceeHHHHHHHHHHhhcCCC
Q 020104          226 GFLLNTSMVHVDDVARAHIFLLEYPD  251 (331)
Q Consensus       226 ~~~~~~~~i~v~D~a~~~~~~~~~~~  251 (331)
                         +...+++.+|+|+++++++..+.
T Consensus       210 ---~~~~~~~pedvA~~v~~l~s~~~  232 (247)
T 2jah_A          210 ---SQIRKLQAQDIAEAVRYAVTAPH  232 (247)
T ss_dssp             ---TTSCCBCHHHHHHHHHHHHHSCT
T ss_pred             ---cccCCCCHHHHHHHHHHHhCCCc
Confidence               11125899999999999998653

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=99.88  E-value=1.3e-21  Score=162.10  Aligned_cols=209  Identities=17%  Similarity=0.149  Sum_probs=151.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      |+|+||||||++.||+++++.|++.|++|++++|+.     +..+.   +.+   ...++.++++|+.|++++.++++  
T Consensus         1 MnK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~-----~~~~~---~~~---~~~~~~~~~~Dv~~~~~v~~~v~~~   69 (247)
T 3ged_A            1 MNRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDE-----KRSAD---FAK---ERPNLFYFHGDVADPLTLKKFVEYA   69 (247)
T ss_dssp             -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHH---HHT---TCTTEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHH---HHH---hcCCEEEEEecCCCHHHHHHHHHHH
Confidence            358999999999999999999999999999999987     22222   211   12578899999999998887764  


Q ss_pred             -----CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHhc---CCccEEEEecccceeecCCCCCCcc
Q 020104           82 -----GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLKS---GTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                           ++|++||+||....      ..+++. ..+++|+.++..+.+++...   + -.++|++||...+..        
T Consensus        70 ~~~~g~iDiLVNNAG~~~~~~~~~~~~e~~~-~~~~vNl~g~~~~~~~~~~~m~~~-~G~IInisS~~~~~~--------  139 (247)
T 3ged_A           70 MEKLQRIDVLVNNACRGSKGILSSLLYEEFD-YILSVGLKAPYELSRLCRDELIKN-KGRIINIASTRAFQS--------  139 (247)
T ss_dssp             HHHHSCCCEEEECCCCCCCCGGGTCCHHHHH-HHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEECCGGGTSC--------
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccCCHHHHH-HHHHHHhHHHHHHHHHHHHHHhhc-CCcEEEEeecccccC--------
Confidence                 68999999985442      222344 88999999998888876542   2 369999999765521        


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc--CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCccc
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH--GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEY  225 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  225 (331)
                                    .+....|+.+|.....+.+.++.+.  +++++.+.||.+-.+....    .....   ..  ..++
T Consensus       140 --------------~~~~~~Y~asKaal~~ltk~lA~ela~~IrVN~I~PG~i~t~~~~~----~~~~~---~~--~~Pl  196 (247)
T 3ged_A          140 --------------EPDSEAYASAKGGIVALTHALAMSLGPDVLVNCIAPGWINVTEQQE----FTQED---CA--AIPA  196 (247)
T ss_dssp             --------------CTTCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCCCC-------CCHHH---HH--TSTT
T ss_pred             --------------CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEecCcCCCCCcHH----HHHHH---Hh--cCCC
Confidence                          1124579999999999999888765  7999999999986653221    11111   11  1222


Q ss_pred             ccCCCccceeHHHHHHHHHHhhcCCCCCce-EEEecc
Q 020104          226 GFLLNTSMVHVDDVARAHIFLLEYPDAKGR-YICSSH  261 (331)
Q Consensus       226 ~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~-~~~~~~  261 (331)
                      +     .+...+|+|.++++++......|. +.++|.
T Consensus       197 ~-----R~g~pediA~~v~fL~s~~~iTG~~i~VDGG  228 (247)
T 3ged_A          197 G-----KVGTPKDISNMVLFLCQQDFITGETIIVDGG  228 (247)
T ss_dssp             S-----SCBCHHHHHHHHHHHHHCSSCCSCEEEESTT
T ss_pred             C-----CCcCHHHHHHHHHHHHhCCCCCCCeEEECcC
Confidence            2     677899999999999986655554 456553

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=99.88  E-value=1.4e-21  Score=166.96  Aligned_cols=223  Identities=17%  Similarity=0.170  Sum_probs=153.8

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |...+|++|||||+|+||++++++|+++|++|++++|+.     +..+.+..  +.   ..++.++.+|+.|.+++.+++
T Consensus         1 M~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~-----~~~~~~~~--~~---~~~~~~~~~Dv~~~~~v~~~~   70 (281)
T 3zv4_A            1 MKLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSA-----ERLRELEV--AH---GGNAVGVVGDVRSLQDQKRAA   70 (281)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHH--HT---BTTEEEEECCTTCHHHHHHHH
T ss_pred             CCcCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCH-----HHHHHHHH--Hc---CCcEEEEEcCCCCHHHHHHHH
Confidence            666778999999999999999999999999999999987     22222211  11   257899999999998887776


Q ss_pred             c-------CccEEEEecccCCCCC------CC----hhhHHHHHHHHHHHHHHHHHHhcC--CccEEEEecccceeecCC
Q 020104           81 A-------GCTGVLHVATPVDFED------KE----PEEVITQRAINGTLGILKSCLKSG--TVKRVVYTSSNAAVFYND  141 (331)
Q Consensus        81 ~-------~~d~Vih~a~~~~~~~------~~----~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~  141 (331)
                      +       ++|++||+||......      .+    ..+..+++|+.++.++++++...-  ...++|++||...+..  
T Consensus        71 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~--  148 (281)
T 3zv4_A           71 ERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGFYP--  148 (281)
T ss_dssp             HHHHHHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTSS--
T ss_pred             HHHHHhcCCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchhccC--
Confidence            4       6899999999653211      01    123678899999999999876431  0259999999776521  


Q ss_pred             CCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc--CCcEEEeccCceeCCCCCCCCCccHHH------
Q 020104          142 KDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH--GLDLVTLIPSMVVGPFICPKFAGSVRS------  213 (331)
Q Consensus       142 ~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~------  213 (331)
                                          .+....|+.+|.+.+.+.+.++.+.  .++++.+.||.+..+-...........      
T Consensus       149 --------------------~~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~  208 (281)
T 3zv4_A          149 --------------------NGGGPLYTATKHAVVGLVRQMAFELAPHVRVNGVAPGGMNTDLRGPSSLGLSEQSISSVP  208 (281)
T ss_dssp             --------------------SSSCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSSCC--CCCTTCC--------CC
T ss_pred             --------------------CCCCchhHHHHHHHHHHHHHHHHHhcCCCEEEEEECCcCcCCcccccccccccccccchh
Confidence                                1224579999999999999998875  399999999999877432211000000      


Q ss_pred             HHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC---C-CceEEEecc
Q 020104          214 SLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---A-KGRYICSSH  261 (331)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~-~~~~~~~~~  261 (331)
                      ....... ....     ..+...+|+|+++++++..+.   . |..+++++.
T Consensus       209 ~~~~~~~-~~p~-----~r~~~pedvA~~v~fL~s~~~~~~itG~~i~vdGG  254 (281)
T 3zv4_A          209 LADMLKS-VLPI-----GRMPALEEYTGAYVFFATRGDSLPATGALLNYDGG  254 (281)
T ss_dssp             HHHHHHH-TCTT-----SSCCCGGGGSHHHHHHHSTTTSTTCSSCEEEESSS
T ss_pred             HHHHHHh-cCCC-----CCCCCHHHHHHHHHHhhcccccccccCcEEEECCC
Confidence            0111111 1112     267889999999999998332   2 445667654

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=99.88  E-value=7e-22  Score=166.39  Aligned_cols=214  Identities=10%  Similarity=0.041  Sum_probs=143.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      ||++|||||+|+||++++++|+++|++|++++|+.     +..+....+...   ..++..+     |.+++.++++   
T Consensus         1 Mk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~~l~~~---~~~~~~~-----d~~~v~~~~~~~~   67 (254)
T 1zmt_A            1 MSTAIVTNVKHFGGMGSALRLSEAGHTVACHDESF-----KQKDELEAFAET---YPQLKPM-----SEQEPAELIEAVT   67 (254)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGG-----GSHHHHHHHHHH---CTTSEEC-----CCCSHHHHHHHHH
T ss_pred             CeEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHhc---CCcEEEE-----CHHHHHHHHHHHH
Confidence            36899999999999999999999999999999987     333222212111   1233333     4555555443   


Q ss_pred             ----CccEEEEecccC-CCC------CCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCc
Q 020104           82 ----GCTGVLHVATPV-DFE------DKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 ----~~d~Vih~a~~~-~~~------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                          ++|+|||+||.. ...      .+++ +..+++|+.++.++++++.    +.+ ..++|++||...+..       
T Consensus        68 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~-~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~-------  138 (254)
T 1zmt_A           68 SAYGQVDVLVSNDIFAPEFQPIDKYAVEDY-RGAVEALQIRPFALVNAVASQMKKRK-SGHIIFITSATPFGP-------  138 (254)
T ss_dssp             HHHSCCCEEEEECCCCCCCCCGGGSCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCSTTTSC-------
T ss_pred             HHhCCCCEEEECCCcCCCCCChhhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECCcccccC-------
Confidence                799999999975 211      1122 3788999999999888774    344 579999999776521       


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccH----HHHHHHHh
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSV----RSSLALIL  219 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~----~~~~~~~~  219 (331)
                                     .++...|+.+|.+.+.+++.++.+.   ++++++++||.++|+.........+    ........
T Consensus       139 ---------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~~~~~~~~~~T~~~~~~~~~~~~~~  203 (254)
T 1zmt_A          139 ---------------WKELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVK  203 (254)
T ss_dssp             ---------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHH
T ss_pred             ---------------CCCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCccccccccccCCCcccccChHHHHHHh
Confidence                           1224579999999999999988764   8999999999998876432211100    00011110


Q ss_pred             CCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          220 GNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       220 ~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      . ....     ..+.+.+|+|+++++++..+.   .+..+++++.
T Consensus       204 ~-~~p~-----~~~~~p~dvA~~v~~l~s~~~~~~tG~~~~vdgG  242 (254)
T 1zmt_A          204 K-VTAL-----QRLGTQKELGELVAFLASGSCDYLTGQVFWLAGG  242 (254)
T ss_dssp             H-HSSS-----SSCBCHHHHHHHHHHHHTTSCGGGTTCEEEESTT
T ss_pred             c-cCCC-----CCCcCHHHHHHHHHHHhCcccCCccCCEEEECCC
Confidence            0 0111     257899999999999997643   2445667654

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=99.88  E-value=9.5e-22  Score=166.98  Aligned_cols=204  Identities=19%  Similarity=0.272  Sum_probs=140.5

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC---
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG---   82 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~---   82 (331)
                      |++|||||+|+||++++++|+++|++|++++|+.     +..+.+..  ++... .++.++.+|+.|.+++.++++.   
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~-----~~~~~~~~--~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~   93 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGWSLVLTGRRE-----ERLQALAG--ELSAK-TRVLPLTLDVRDRAAMSAAVDNLPE   93 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHH--HHTTT-SCEEEEECCTTCHHHHHHHHHTCCG
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHH--HhhcC-CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999986     22222111  11111 4688999999999999888753   


Q ss_pred             ----ccEEEEecccCCC-C------CCChhhHHHHHHHHHHHHHHHHHH----hcCCcc-EEEEecccceeecCCCCCCc
Q 020104           83 ----CTGVLHVATPVDF-E------DKEPEEVITQRAINGTLGILKSCL----KSGTVK-RVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        83 ----~d~Vih~a~~~~~-~------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~-~~v~~SS~~~~~~~~~~~~~  146 (331)
                          +|+|||+||.... .      .+++ +..+++|+.++.++++++.    +.+ .. ++|++||...+..       
T Consensus        94 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~-~~~~~vN~~g~~~~~~~~~~~m~~~~-~g~~IV~isS~~~~~~-------  164 (272)
T 2nwq_A           94 EFATLRGLINNAGLALGTDPAQSCDLDDW-DTMVDTNIKGLLYSTRLLLPRLIAHG-AGASIVNLGSVAGKWP-------  164 (272)
T ss_dssp             GGSSCCEEEECCCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHC-TTCEEEEECCGGGTSC-------
T ss_pred             HhCCCCEEEECCCCCCCCCCcccCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEeCCchhccC-------
Confidence                6999999986431 1      1123 3788999999877766654    445 56 9999999776521       


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE  223 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  223 (331)
                                     .++...|+.+|.+.+.+++.++.+.   ++++++++||.+.++............ ..      .
T Consensus       165 ---------------~~~~~~Y~asKaa~~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~-~~------~  222 (272)
T 2nwq_A          165 ---------------YPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLVRFGGDQAR-YD------K  222 (272)
T ss_dssp             ---------------CTTCHHHHHHHHHHHHHHHHHHTTCTTSCCEEEEEEECSBC------------------------
T ss_pred             ---------------CCCCchHHHHHHHHHHHHHHHHHHhCccCeEEEEEEcCCCcCcchhcccccchHH-HH------H
Confidence                           1224579999999999999988653   799999999999877422100000000 00      0


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCCC
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYPD  251 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~  251 (331)
                      .+   ....++..+|+|+++++++..+.
T Consensus       223 ~~---~~~~~~~pedvA~~v~~l~s~~~  247 (272)
T 2nwq_A          223 TY---AGAHPIQPEDIAETIFWIMNQPA  247 (272)
T ss_dssp             ------CCCCBCHHHHHHHHHHHHTSCT
T ss_pred             hh---ccCCCCCHHHHHHHHHHHhCCCc
Confidence            00   01135789999999999998653

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=99.87  E-value=9.6e-22  Score=166.32  Aligned_cols=219  Identities=15%  Similarity=0.176  Sum_probs=149.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+.     +..+.. ..+..   ...++.++.+|+.|.+++.++++ 
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~   77 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR-----EALEKAEASVRE---KGVEARSYVCDVTSEEAVIGTVDS   77 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHT---TTSCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHh---cCCcEEEEEecCCCHHHHHHHHHH
Confidence            357899999999999999999999999999999986     222221 11111   12468899999999988877764 


Q ss_pred             ------CccEEEEecccC-CC------CCCChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCCCCC
Q 020104           82 ------GCTGVLHVATPV-DF------EDKEPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 ------~~d~Vih~a~~~-~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                            ++|+|||+||.. ..      ...++ +..+++|+.++.++++++...    + ..++|++||...+...    
T Consensus        78 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~-~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~----  151 (262)
T 1zem_A           78 VVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDF-ARVLTINVTGAFHVLKAVSRQMITQN-YGRIVNTASMAGVKGP----  151 (262)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCBCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHSCC----
T ss_pred             HHHHhCCCCEEEECCCCCCCCCccccCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcchhhccCC----
Confidence                  689999999865 21      11123 378899999999988887643    4 5799999997765311    


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCC------------CCc
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPK------------FAG  209 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~------------~~~  209 (331)
                                        ++...|+.+|.+.+.+.+.++.+.   ++++++++||.+..+.....            ...
T Consensus       152 ------------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~  213 (262)
T 1zem_A          152 ------------------PNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFST  213 (262)
T ss_dssp             ------------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCS
T ss_pred             ------------------CCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEecCCcCcchhhhhccchhhhcccccccc
Confidence                              124579999999999998887653   79999999998876531100            000


Q ss_pred             cHHHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEec
Q 020104          210 SVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSS  260 (331)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~  260 (331)
                      .-......... ...+     ..+...+|+|+++++++....  ..| .+.++|
T Consensus       214 ~~~~~~~~~~~-~~p~-----~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdG  261 (262)
T 1zem_A          214 DPKVVAQQMIG-SVPM-----RRYGDINEIPGVVAFLLGDDSSFMTGVNLPIAG  261 (262)
T ss_dssp             SHHHHHHHHHH-TSTT-----SSCBCGGGSHHHHHHHHSGGGTTCCSCEEEESC
T ss_pred             CHHHHHHHHHh-cCCC-----CCCcCHHHHHHHHHHHcCchhcCcCCcEEecCC
Confidence            00000010100 0111     257789999999999997543  234 445543

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=99.87  E-value=1.1e-21  Score=167.70  Aligned_cols=215  Identities=20%  Similarity=0.180  Sum_probs=152.1

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      +|++|||||+|+||++++++|+++|++|++++|+.     +..+.+..  ++   ..++.++.+|+.|.+++.++++   
T Consensus        30 ~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~-----~~~~~~~~--~~---~~~~~~~~~Dl~~~~~v~~~~~~~~   99 (281)
T 3ppi_A           30 GASAIVSGGAGGLGEATVRRLHADGLGVVIADLAA-----EKGKALAD--EL---GNRAEFVSTNVTSEDSVLAAIEAAN   99 (281)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHH--HH---CTTEEEEECCTTCHHHHHHHHHHHT
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCh-----HHHHHHHH--Hh---CCceEEEEcCCCCHHHHHHHHHHHH
Confidence            46899999999999999999999999999999987     22222211  11   2478999999999998888775   


Q ss_pred             ---CccEEEEecccCC-CC--------CCCh--hhHHHHHHHHHHHHHHHHHHhcC---------CccEEEEecccceee
Q 020104           82 ---GCTGVLHVATPVD-FE--------DKEP--EEVITQRAINGTLGILKSCLKSG---------TVKRVVYTSSNAAVF  138 (331)
Q Consensus        82 ---~~d~Vih~a~~~~-~~--------~~~~--~~~~~~~n~~~~~~l~~~~~~~~---------~~~~~v~~SS~~~~~  138 (331)
                         ++|++||+|+... ..        ..+.  .+..+++|+.++.++++++...-         ...++|++||...+.
T Consensus       100 ~~~~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~  179 (281)
T 3ppi_A          100 QLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYE  179 (281)
T ss_dssp             TSSEEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGTS
T ss_pred             HhCCCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEecccccC
Confidence               5899999954322 11        1111  24889999999999999876321         135999999987653


Q ss_pred             cCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHH
Q 020104          139 YNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSL  215 (331)
Q Consensus       139 ~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~  215 (331)
                      .                      .++...|+.+|.+.+.+++.++.+.   +++++.++||.+..+..... .   ....
T Consensus       180 ~----------------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~-~---~~~~  233 (281)
T 3ppi_A          180 G----------------------QIGQTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPIMESV-G---EEAL  233 (281)
T ss_dssp             C----------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTT-C---HHHH
T ss_pred             C----------------------CCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCCchhhhcc-c---HHHH
Confidence            1                      1224589999999999999888775   79999999999976532211 0   1111


Q ss_pred             HHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCCCCc-eEEEec
Q 020104          216 ALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDAKG-RYICSS  260 (331)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~-~~~~~~  260 (331)
                      ....... ...    ..+++.+|+|+++++++......| .+++++
T Consensus       234 ~~~~~~~-~~~----~~~~~pedvA~~v~~l~s~~~~tG~~i~vdG  274 (281)
T 3ppi_A          234 AKFAANI-PFP----KRLGTPDEFADAAAFLLTNGYINGEVMRLDG  274 (281)
T ss_dssp             HHHHHTC-CSS----SSCBCHHHHHHHHHHHHHCSSCCSCEEEEST
T ss_pred             HHHHhcC-CCC----CCCCCHHHHHHHHHHHHcCCCcCCcEEEECC
Confidence            1111111 110    268899999999999998766555 556755

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=99.87  E-value=1.4e-21  Score=162.77  Aligned_cols=199  Identities=20%  Similarity=0.209  Sum_probs=145.5

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      ||++|||||+|+||++++++|+++|++|++++|+.     +..+.. ..+.+  ....++.++.+|+.|.+++.++++  
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~v~~~~~~~   74 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYALALGARSV-----DRLEKIAHELMQ--EQGVEVFYHHLDVSKAESVEEFSKKV   74 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHH--HHCCCEEEEECCTTCHHHHHHHCC-H
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHh--hcCCeEEEEEeccCCHHHHHHHHHHH
Confidence            57899999999999999999999999999999987     222221 11110  012578899999999998888875  


Q ss_pred             -----CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhc---CCccEEEEecccceeecCCCCCCcc
Q 020104           82 -----GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKS---GTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                           ++|++||+||.....      .+++ +..+++|+.++.++++++...   + ..++|++||......        
T Consensus        75 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~~~-~~~ii~~sS~~~~~~--------  144 (235)
T 3l77_A           75 LERFGDVDVVVANAGLGYFKRLEELSEEEF-HEMIEVNLLGVWRTLKAFLDSLKRT-GGLALVTTSDVSARL--------  144 (235)
T ss_dssp             HHHHSSCSEEEECCCCCCCCCTTTSCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECCGGGSSC--------
T ss_pred             HHhcCCCCEEEECCccccccCcccCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhc-CCcEEEEecchhccc--------
Confidence                 689999999965422      1223 378899999999999988642   2 257787877654421        


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc-CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccc
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH-GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYG  226 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~-~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (331)
                                    .+....|+.+|.+.+.+++.+..+. +++++.++||.+..+......            ...    
T Consensus       145 --------------~~~~~~Y~~sKaa~~~~~~~l~~~~~~i~v~~v~PG~v~T~~~~~~~------------~~~----  194 (235)
T 3l77_A          145 --------------IPYGGGYVSTKWAARALVRTFQIENPDVRFFELRPGAVDTYFGGSKP------------GKP----  194 (235)
T ss_dssp             --------------CTTCHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEECSBSSSTTTCCS------------CCC----
T ss_pred             --------------CCCcchHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCccccccccccC------------Ccc----
Confidence                          1124579999999999999885544 899999999999776422110            000    


Q ss_pred             cCCCccceeHHHHHHHHHHhhcCCCC
Q 020104          227 FLLNTSMVHVDDVARAHIFLLEYPDA  252 (331)
Q Consensus       227 ~~~~~~~i~v~D~a~~~~~~~~~~~~  252 (331)
                        ....++..+|+|+++++++..+..
T Consensus       195 --~~~~~~~p~dva~~v~~l~~~~~~  218 (235)
T 3l77_A          195 --KEKGYLKPDEIAEAVRCLLKLPKD  218 (235)
T ss_dssp             --GGGTCBCHHHHHHHHHHHHTSCTT
T ss_pred             --cccCCCCHHHHHHHHHHHHcCCCC
Confidence              012678999999999999987653

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=99.87  E-value=8.4e-22  Score=165.68  Aligned_cols=209  Identities=20%  Similarity=0.202  Sum_probs=149.3

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCC--CCCccHHHHh
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADL--SHPDGFDAAI   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~--~~~~~~~~~~   80 (331)
                      .+|++|||||+|+||+++++.|+++|++|++++|+.     +..+.. ..+.+.  ...++.++.+|+  .|.+++.+++
T Consensus        11 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~   83 (252)
T 3f1l_A           11 NDRIILVTGASDGIGREAAMTYARYGATVILLGRNE-----EKLRQVASHINEE--TGRQPQWFILDLLTCTSENCQQLA   83 (252)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHHH--HSCCCEEEECCTTTCCHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHhh--cCCCceEEEEecccCCHHHHHHHH
Confidence            357899999999999999999999999999999987     222221 111111  013678899999  8888777766


Q ss_pred             c-------CccEEEEecccCC----CCCCCh--hhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCC
Q 020104           81 A-------GCTGVLHVATPVD----FEDKEP--EEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        81 ~-------~~d~Vih~a~~~~----~~~~~~--~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~  143 (331)
                      +       ++|++||+||...    ....++  .+..+++|+.++.++++++    ++.+ ..++|++||...+..    
T Consensus        84 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~~~----  158 (252)
T 3f1l_A           84 QRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSD-AGSLVFTSSSVGRQG----  158 (252)
T ss_dssp             HHHHHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSS-SCEEEEECCGGGTSC----
T ss_pred             HHHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCC-CCEEEEECChhhccC----
Confidence            4       6899999999642    111111  1378999999999999988    4445 579999999776521    


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcC--CcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHG--LDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~--~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                                        .++...|+.+|.+.+.+++.++.+++  ++++.+.||.+..+.            .......
T Consensus       159 ------------------~~~~~~Y~asK~a~~~l~~~la~e~~~~irvn~v~PG~v~t~~------------~~~~~~~  208 (252)
T 3f1l_A          159 ------------------RANWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTAM------------RASAFPT  208 (252)
T ss_dssp             ------------------CTTCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECCSBSSHH------------HHHHCTT
T ss_pred             ------------------CCCCchhHHHHHHHHHHHHHHHHHhcCCcEEEEEecCcccCch------------hhhhCCc
Confidence                              12245799999999999999998864  899999999886541            1111111


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCC--C-CceEEEec
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPD--A-KGRYICSS  260 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~-~~~~~~~~  260 (331)
                      . .     ...+.+.+|++.++++++..+.  . |..+++++
T Consensus       209 ~-~-----~~~~~~p~dva~~~~~L~s~~~~~itG~~i~vdg  244 (252)
T 3f1l_A          209 E-D-----PQKLKTPADIMPLYLWLMGDDSRRKTGMTFDAQP  244 (252)
T ss_dssp             C-C-----GGGSBCTGGGHHHHHHHHSGGGTTCCSCEEESSC
T ss_pred             c-c-----hhccCCHHHHHHHHHHHcCccccCCCCCEEEeCC
Confidence            1 1     1256789999999999997653  2 44667754

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=99.87  E-value=6.5e-22  Score=168.85  Aligned_cols=212  Identities=15%  Similarity=0.110  Sum_probs=146.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+.     +..+.. ..+.+..  ...+.++.+|+.|.+++.++++ 
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~-----~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~  104 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRP-----DVLDAAAGEIGGRT--GNIVRAVVCDVGDPDQVAALFAA  104 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHHHH--SSCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHHhcC--CCeEEEEEcCCCCHHHHHHHHHH
Confidence            357899999999999999999999999999999987     222211 1111110  1235889999999998887764 


Q ss_pred             ------CccEEEEecccCCC-------CCCChhhHHHHHHHHHHHHHHHHHHhc----C-CccEEEEecccceeecCCCC
Q 020104           82 ------GCTGVLHVATPVDF-------EDKEPEEVITQRAINGTLGILKSCLKS----G-TVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~~~----~-~~~~~v~~SS~~~~~~~~~~  143 (331)
                            ++|++||+||....       ..+++ +..+++|+.++.++++++...    + ...++|++||...+..    
T Consensus       105 ~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~-~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~----  179 (281)
T 4dry_A          105 VRAEFARLDLLVNNAGSNVPPVPLEEVTFEQW-NGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTP----  179 (281)
T ss_dssp             HHHHHSCCSEEEECCCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTCC----
T ss_pred             HHHHcCCCCEEEECCCCCCCCCCcccCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCCC----
Confidence                  68999999986432       11223 368999999988888776543    1 1359999999775521    


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhC
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILG  220 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~  220 (331)
                                        .++...|+.+|.+.+.+++.++.+   ++++++.++||.+..+......           ..
T Consensus       180 ------------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~-----------~~  230 (281)
T 4dry_A          180 ------------------RPNSAPYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATDMTARMS-----------TG  230 (281)
T ss_dssp             ------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEECBCC------------------CE
T ss_pred             ------------------CCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcCcChhhhhhc-----------ch
Confidence                              123568999999999999998876   4899999999999876322100           00


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCCCCCceE
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYPDAKGRY  256 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~  256 (331)
                      ............++..+|+|+++++++..+....+.
T Consensus       231 ~~~~~~~~~~~~~~~pedvA~~v~fL~s~~~~~~i~  266 (281)
T 4dry_A          231 VLQANGEVAAEPTIPIEHIAEAVVYMASLPLSANVL  266 (281)
T ss_dssp             EECTTSCEEECCCBCHHHHHHHHHHHHHSCTTEEEE
T ss_pred             hhhhhhcccccCCCCHHHHHHHHHHHhCCCccCccc
Confidence            000000001135789999999999999988765544

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=99.87  E-value=1.9e-21  Score=165.02  Aligned_cols=221  Identities=13%  Similarity=0.085  Sum_probs=155.6

Q ss_pred             CCceEEEecCc--chhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGGT--GFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      .+|++|||||+  |+||.+++++|++.|++|++++|+.....   .+..+.+.+.  ...++.++.+|+.|.+++.++++
T Consensus        19 ~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~---~~~~~~l~~~--~~~~~~~~~~Dl~~~~~v~~~~~   93 (267)
T 3gdg_A           19 KGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGA---EENVKELEKT--YGIKAKAYKCQVDSYESCEKLVK   93 (267)
T ss_dssp             TTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHH---HHHHHHHHHH--HCCCEECCBCCTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhH---HHHHHHHHHh--cCCceeEEecCCCCHHHHHHHHH
Confidence            46789999999  99999999999999999999998872100   1222222111  12578899999999998887765


Q ss_pred             -------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCCC
Q 020104           82 -------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 -------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                             ++|+|||+||.....      .+++ +..+++|+.++.++++++    ++.+ ..++|++||...+....   
T Consensus        94 ~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~~~---  168 (267)
T 3gdg_A           94 DVVADFGQIDAFIANAGATADSGILDGSVEAW-NHVVQVDLNGTFHCAKAVGHHFKERG-TGSLVITASMSGHIANF---  168 (267)
T ss_dssp             HHHHHTSCCSEEEECCCCCCCSCTTTSCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTSCCS---
T ss_pred             HHHHHcCCCCEEEECCCcCCCCCcccCCHHHH-HHHHHhcchHHHHHHHHHHHHHHHcC-CceEEEEccccccccCC---
Confidence                   579999999865421      1123 378999999999999887    4445 57999999977552110   


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcC--CcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHG--LDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~--~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                       +++...|+.+|.+.+.+++.++.+++  ++++.+.||.+..+..... .   ........ ..
T Consensus       169 -----------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~i~v~~v~PG~v~t~~~~~~-~---~~~~~~~~-~~  226 (267)
T 3gdg_A          169 -----------------PQEQTSYNVAKAGCIHMARSLANEWRDFARVNSISPGYIDTGLSDFV-P---KETQQLWH-SM  226 (267)
T ss_dssp             -----------------SSCCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEECCEECSCGGGS-C---HHHHHHHH-TT
T ss_pred             -----------------CCCCCcchHHHHHHHHHHHHHHHHhccCcEEEEEECCccccchhhhC-C---HHHHHHHH-hc
Confidence                             12345799999999999999998764  7999999999987643211 1   11111111 11


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC--C-CceEEEecc
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD--A-KGRYICSSH  261 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~-~~~~~~~~~  261 (331)
                      ...     ..+.+.+|+|+++++++....  . |..++++++
T Consensus       227 ~~~-----~r~~~~~dva~~~~~l~s~~~~~itG~~i~vdgG  263 (267)
T 3gdg_A          227 IPM-----GRDGLAKELKGAYVYFASDASTYTTGADLLIDGG  263 (267)
T ss_dssp             STT-----SSCEETHHHHHHHHHHHSTTCTTCCSCEEEESTT
T ss_pred             CCC-----CCCcCHHHHHhHhheeecCccccccCCEEEECCc
Confidence            222     378899999999999997543  2 445677653

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=99.87  E-value=3.1e-21  Score=162.64  Aligned_cols=220  Identities=14%  Similarity=0.120  Sum_probs=153.0

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      +|++|||||+|+||++++++|+++|++|+++.++..    +..+..  ..++.....++.++.+|+.|.+++..+++   
T Consensus         7 ~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   80 (255)
T 3icc_A            7 GKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRK----EEAEET--VYEIQSNGGSAFSIGANLESLHGVEALYSSLD   80 (255)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCS----HHHHHH--HHHHHHTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCch----HHHHHH--HHHHHhcCCceEEEecCcCCHHHHHHHHHHHH
Confidence            478999999999999999999999999998754431    111111  11111123568889999999988777654   


Q ss_pred             ----------CccEEEEecccCCCCC-----CChhhHHHHHHHHHHHHHHHHHHhc--CCccEEEEecccceeecCCCCC
Q 020104           82 ----------GCTGVLHVATPVDFED-----KEPEEVITQRAINGTLGILKSCLKS--GTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 ----------~~d~Vih~a~~~~~~~-----~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                                ++|++||+||......     .+..+..+++|+.++.++++++...  + ..++|++||...+..     
T Consensus        81 ~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-~~~iv~isS~~~~~~-----  154 (255)
T 3icc_A           81 NELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRD-NSRIINISSAATRIS-----  154 (255)
T ss_dssp             HHHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEE-EEEEEEECCGGGTSC-----
T ss_pred             HHhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCC-CCEEEEeCChhhccC-----
Confidence                      2899999998644211     1112367889999999999998865  3 458999999776531     


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                                       .+....|+.+|.+.+.+.+.++.+.   +++++.++||.+..+.........  ....... .
T Consensus       155 -----------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~--~~~~~~~-~  214 (255)
T 3icc_A          155 -----------------LPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAELLSDP--MMKQYAT-T  214 (255)
T ss_dssp             -----------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCSSSTTTTTSH--HHHHHHH-H
T ss_pred             -----------------CCCcchhHHhHHHHHHHHHHHHHHHHhcCeEEEEEEEeeecccchhhhcccH--HHHHhhh-c
Confidence                             1224579999999999999988764   899999999999887543322111  1111111 1


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ...+     ..+.+++|+|+++++++....   .|..++++++
T Consensus       215 ~~~~-----~~~~~~~dva~~~~~l~s~~~~~~tG~~i~vdgG  252 (255)
T 3icc_A          215 ISAF-----NRLGEVEDIADTAAFLASPDSRWVTGQLIDVSGG  252 (255)
T ss_dssp             TSTT-----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred             cCCc-----CCCCCHHHHHHHHHHHhCcccCCccCCEEEecCC
Confidence            1112     267899999999999987543   2456677654

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=99.87  E-value=4.5e-21  Score=167.15  Aligned_cols=217  Identities=14%  Similarity=0.024  Sum_probs=152.1

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEe-cCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCc--------
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTV-RSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPD--------   74 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~--------   74 (331)
                      +|++|||||+|+||+++++.|+++|++|++++ |+.     ...+.. ..+..  ....++.++.+|+.|.+        
T Consensus        46 ~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~-----~~~~~~~~~l~~--~~~~~~~~~~~Dl~d~~~~~~~~~~  118 (328)
T 2qhx_A           46 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSA-----AEANALSATLNA--RRPNSAITVQADLSNVATAPVSGAD  118 (328)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH-----HHHHHHHHHHHH--HSTTCEEEEECCCSSSCBCC-----
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCH-----HHHHHHHHHHHh--hcCCeEEEEEeeCCCchhccccccc
Confidence            47899999999999999999999999999999 876     222211 11110  01246889999999999        


Q ss_pred             ---------cHHHHhc-------CccEEEEecccCCCCC-------------------CChhhHHHHHHHHHHHHHHHHH
Q 020104           75 ---------GFDAAIA-------GCTGVLHVATPVDFED-------------------KEPEEVITQRAINGTLGILKSC  119 (331)
Q Consensus        75 ---------~~~~~~~-------~~d~Vih~a~~~~~~~-------------------~~~~~~~~~~n~~~~~~l~~~~  119 (331)
                               ++.++++       ++|+|||+||......                   .+..+..+++|+.++.++++++
T Consensus       119 ~~~~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~  198 (328)
T 2qhx_A          119 GSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAF  198 (328)
T ss_dssp             --CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             cccccccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence                     8887765       7899999998653211                   1111367899999999998887


Q ss_pred             Hhc---CC------ccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---C
Q 020104          120 LKS---GT------VKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---G  187 (331)
Q Consensus       120 ~~~---~~------~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~  187 (331)
                      ...   ..      ..++|++||...+..                      .++...|+.+|.+.+.+.+.++.+.   +
T Consensus       199 ~~~m~~~~~~~~~~~g~IV~isS~~~~~~----------------------~~~~~~Y~asKaal~~l~~~la~el~~~g  256 (328)
T 2qhx_A          199 AHRVAGTPAKHRGTNYSIINMVDAMTNQP----------------------LLGYTIYTMAKGALEGLTRSAALELAPLQ  256 (328)
T ss_dssp             HHHHHHSCGGGSCSCEEEEEECCTTTTSC----------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred             HHHHHhcCCcCCCCCcEEEEECchhhccC----------------------CCCcHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            642   11      369999999775521                      1224579999999999999988775   7


Q ss_pred             CcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC--C-CceEEEecc
Q 020104          188 LDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--A-KGRYICSSH  261 (331)
Q Consensus       188 ~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~-~~~~~~~~~  261 (331)
                      +++++++||.+.++. . ..    .......... ..+.    ..+...+|+|+++++++....  . |..++++++
T Consensus       257 Irvn~v~PG~v~T~~-~-~~----~~~~~~~~~~-~p~~----~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdGG  322 (328)
T 2qhx_A          257 IRVNGVGPGLSVLVD-D-MP----PAVWEGHRSK-VPLY----QRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGG  322 (328)
T ss_dssp             EEEEEEEESSBSCCC-C-SC----HHHHHHHHTT-CTTT----TSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             cEEEEEecCcccCCc-c-cc----HHHHHHHHhh-CCCC----CCCCCHHHHHHHHHHHhCccccCccCcEEEECCC
Confidence            999999999999876 2 11    1112211111 1111    146789999999999997532  2 445667654

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=99.87  E-value=4.5e-21  Score=167.94  Aligned_cols=219  Identities=16%  Similarity=0.190  Sum_probs=150.5

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      +|++|||||+|.||.+++++|+++|++|++++|+................++.....++.++.+|+.|.+++.++++   
T Consensus        45 gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~  124 (346)
T 3kvo_A           45 GCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVEKAI  124 (346)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHH
Confidence            47899999999999999999999999999999987311100000000011111122578899999999998888775   


Q ss_pred             ----CccEEEEecccCCCC---CC--ChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCccc
Q 020104           82 ----GCTGVLHVATPVDFE---DK--EPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        82 ----~~d~Vih~a~~~~~~---~~--~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                          ++|+|||+|+.....   ..  +..+..+++|+.++.++++++.    +.+ ..++|++||...+...        
T Consensus       125 ~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~-~g~IV~iSS~~~~~~~--------  195 (346)
T 3kvo_A          125 KKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSK-VAHILNISPPLNLNPV--------  195 (346)
T ss_dssp             HHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCS-SCEEEEECCCCCCCGG--------
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-CCEEEEECCHHHcCCC--------
Confidence                799999999965421   11  1124789999999999999884    334 5799999997765310        


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc--CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccc
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH--GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYG  226 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (331)
                                  ..++...|+.+|.+.+.+++.++.+.  +++++.+.|+.+....           ...... ..... 
T Consensus       196 ------------~~~~~~~Y~aSKaal~~l~~~la~e~~~gIrvn~v~PG~~i~T~-----------~~~~~~-~~~~~-  250 (346)
T 3kvo_A          196 ------------WFKQHCAYTIAKYGMSMYVLGMAEEFKGEIAVNALWPKTAIHTA-----------AMDMLG-GPGIE-  250 (346)
T ss_dssp             ------------GTSSSHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECSBCBCCH-----------HHHHHC-C--CG-
T ss_pred             ------------CCCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCccccH-----------HHHhhc-ccccc-
Confidence                        01224579999999999999998875  7999999999633221           111111 11111 


Q ss_pred             cCCCccceeHHHHHHHHHHhhcCCC-CCceEEEecc
Q 020104          227 FLLNTSMVHVDDVARAHIFLLEYPD-AKGRYICSSH  261 (331)
Q Consensus       227 ~~~~~~~i~v~D~a~~~~~~~~~~~-~~~~~~~~~~  261 (331)
                          ..+...+|+|+++++++.... ..|.+.+.++
T Consensus       251 ----~r~~~pedvA~~v~~L~s~~~~itG~~ivdgg  282 (346)
T 3kvo_A          251 ----SQCRKVDIIADAAYSIFQKPKSFTGNFVIDEN  282 (346)
T ss_dssp             ----GGCBCTHHHHHHHHHHHTSCTTCCSCEEEHHH
T ss_pred             ----ccCCCHHHHHHHHHHHHhcCCCCCceEEECCc
Confidence                257789999999999998722 3455545443

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=99.87  E-value=2.6e-21  Score=164.66  Aligned_cols=216  Identities=16%  Similarity=0.196  Sum_probs=148.6

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccc-cCCCCCCCcEEEEeCCCCCCccHHHH
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFL-KNLPGASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      |...+|++|||||+|.||++++++|+++|++|++++|+..+..... +.+... .++.....++.++.+|+.|.+++.++
T Consensus         2 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~   80 (274)
T 3e03_A            2 LTLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLP-GTIHSAAAAVNAAGGQGLALKCDIREEDQVRAA   80 (274)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSC-CCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHH
T ss_pred             CCCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhH-HHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH
Confidence            5566789999999999999999999999999999999873111000 001110 00111125788999999999988877


Q ss_pred             hc-------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCC
Q 020104           80 IA-------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDK  142 (331)
Q Consensus        80 ~~-------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~  142 (331)
                      ++       ++|++||+||.....      .+++ +..+++|+.++..+++++..    .+ ..++|++||...+.... 
T Consensus        81 ~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~~~~~~-  157 (274)
T 3e03_A           81 VAATVDTFGGIDILVNNASAIWLRGTLDTPMKRF-DLMQQVNARGSFVCAQACLPHLLQAP-NPHILTLAPPPSLNPAW-  157 (274)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHH-HHHHHHTHHHHHHHHHHHHHHHTTSS-SCEEEECCCCCCCCHHH-
T ss_pred             HHHHHHHcCCCCEEEECCCcccCCCcccCCHHHH-HHHHhHhhHhHHHHHHHHHHHHHhcC-CceEEEECChHhcCCCC-
Confidence            64       689999999865421      1122 37888999999999998754    34 57999999976553100 


Q ss_pred             CCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCc-eeCCCCCCCCCccHHHHHHHH
Q 020104          143 DVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSM-VVGPFICPKFAGSVRSSLALI  218 (331)
Q Consensus       143 ~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~-v~G~~~~~~~~~~~~~~~~~~  218 (331)
                                         .++...|+.+|.+.+.+.+.++.+.   +++++.+.||. +-.+..            ...
T Consensus       158 -------------------~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~~v~T~~~------------~~~  206 (274)
T 3e03_A          158 -------------------WGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVIATDAI------------NML  206 (274)
T ss_dssp             -------------------HHHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSBCBCC------------------
T ss_pred             -------------------CCCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCcccccchh------------hhc
Confidence                               0124579999999999999988764   79999999995 433211            000


Q ss_pred             hCCCcccccCCCccceeHHHHHHHHHHhhcCCCC--CceEEE
Q 020104          219 LGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDA--KGRYIC  258 (331)
Q Consensus       219 ~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~--~~~~~~  258 (331)
                      ...  ..     ..+...+|+|+++++++.....  .|.+.+
T Consensus       207 ~~~--~~-----~~~~~pedvA~~v~~l~s~~~~~itG~~i~  241 (274)
T 3e03_A          207 PGV--DA-----AACRRPEIMADAAHAVLTREAAGFHGQFLI  241 (274)
T ss_dssp             -CC--CG-----GGSBCTHHHHHHHHHHHTSCCTTCCSCEEE
T ss_pred             ccc--cc-----cccCCHHHHHHHHHHHhCccccccCCeEEE
Confidence            111  11     2467899999999999976542  454444

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=99.87  E-value=1.5e-21  Score=167.55  Aligned_cols=218  Identities=15%  Similarity=0.088  Sum_probs=150.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC-CCcccCCccccccccCCCCCCCcEEEEeCCCCC----CccHHH
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE-LDPEHRNSKDLSFLKNLPGASERLRIFHADLSH----PDGFDA   78 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~----~~~~~~   78 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+. .    ...+....+..  ....++.++.+|+.|    .+++.+
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~----~~~~~~~~l~~--~~~~~~~~~~~Dv~~~~~~~~~v~~   95 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAE----AAVSLADELNK--ERSNTAVVCQADLTNSNVLPASCEE   95 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHH----HHHHHHHHHHH--HSTTCEEEEECCCSCSTTHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchH----HHHHHHHHHHh--hcCCceEEEEeecCCccCCHHHHHH
Confidence            357899999999999999999999999999999976 2    11111111110  012468899999999    777776


Q ss_pred             Hhc-------CccEEEEecccCCCCC-------C-----C---hhhHHHHHHHHHHHHHHHHHHhcC---C------ccE
Q 020104           79 AIA-------GCTGVLHVATPVDFED-------K-----E---PEEVITQRAINGTLGILKSCLKSG---T------VKR  127 (331)
Q Consensus        79 ~~~-------~~d~Vih~a~~~~~~~-------~-----~---~~~~~~~~n~~~~~~l~~~~~~~~---~------~~~  127 (331)
                      +++       ++|+|||+||......       .     .   ..+..+++|+.++..+++++...-   .      ..+
T Consensus        96 ~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~  175 (288)
T 2x9g_A           96 IINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLS  175 (288)
T ss_dssp             HHHHHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEE
T ss_pred             HHHHHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeE
Confidence            664       6899999998654211       1     1   113678899999999998876532   0      258


Q ss_pred             EEEecccceeecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCC
Q 020104          128 VVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFIC  204 (331)
Q Consensus       128 ~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~  204 (331)
                      +|++||...+..                      .++...|+.+|.+.+.+.+.++.+.   ++++++++||.++++. .
T Consensus       176 iv~isS~~~~~~----------------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~-~  232 (288)
T 2x9g_A          176 IVNLCDAMVDQP----------------------CMAFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPV-A  232 (288)
T ss_dssp             EEEECCTTTTSC----------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSCSCCT-T
T ss_pred             EEEEecccccCC----------------------CCCCchHHHHHHHHHHHHHHHHHHhhccCeEEEEEEeccccCcc-c
Confidence            999999776521                      1224579999999999999888764   8999999999999886 2


Q ss_pred             CCCCccHHHHHHHHhCCCcccccCCCccc-eeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          205 PKFAGSVRSSLALILGNREEYGFLLNTSM-VHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                       ...   .........  ...     ..+ ...+|+|+++++++....  ..| .+++.++
T Consensus       233 -~~~---~~~~~~~~~--~p~-----~r~~~~pedvA~~v~~l~s~~~~~itG~~i~vdGG  282 (288)
T 2x9g_A          233 -MGE---EEKDKWRRK--VPL-----GRREASAEQIADAVIFLVSGSAQYITGSIIKVDGG  282 (288)
T ss_dssp             -SCH---HHHHHHHHT--CTT-----TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             -cCh---HHHHHHHhh--CCC-----CCCCCCHHHHHHHHHHHhCccccCccCCEEEECcc
Confidence             111   111111111  111     145 799999999999997532  334 5566554

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=99.87  E-value=2.4e-20  Score=153.44  Aligned_cols=213  Identities=14%  Similarity=0.095  Sum_probs=152.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|++|||||++.||+++++.|++.|++|++++|+.+     ..+.        ....++..+.+|+.|+++++++++  
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~-----~~~~--------~~~~~~~~~~~Dv~~~~~v~~~~~~~   76 (242)
T 4b79_A           10 AGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDAD-----GVHA--------PRHPRIRREELDITDSQRLQRLFEAL   76 (242)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTT-----STTS--------CCCTTEEEEECCTTCHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHH-----HHhh--------hhcCCeEEEEecCCCHHHHHHHHHhc
Confidence            3689999999999999999999999999999999872     2211        112578899999999999988875  


Q ss_pred             -CccEEEEecccCCC----CCCChhhHHHHHHHHHHHHHHHHHHhc---CCccEEEEecccceeecCCCCCCcccCCCCC
Q 020104           82 -GCTGVLHVATPVDF----EDKEPEEVITQRAINGTLGILKSCLKS---GTVKRVVYTSSNAAVFYNDKDVDMMDETFWS  153 (331)
Q Consensus        82 -~~d~Vih~a~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~  153 (331)
                       ++|++||+||....    +.+++. ..+++|+.++..+.+++...   + -.++|++||......              
T Consensus        77 g~iDiLVNNAGi~~~~~~~~~~~w~-~~~~vNl~g~~~~~~~~~p~m~~~-~G~IVnisS~~~~~~--------------  140 (242)
T 4b79_A           77 PRLDVLVNNAGISRDREEYDLATFE-RVLRLNLSAAMLASQLARPLLAQR-GGSILNIASMYSTFG--------------  140 (242)
T ss_dssp             SCCSEEEECCCCCCGGGGGSHHHHH-HHHHHHTHHHHHHHHHHHHHHHHH-CEEEEEECCGGGTSC--------------
T ss_pred             CCCCEEEECCCCCCCcccCCHHHHH-HHHHHhhHHHHHHHHHHHHHHHHc-CCeEEEEeeccccCC--------------
Confidence             68999999986541    222344 78999999988888766532   1 269999999765421              


Q ss_pred             ChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCC
Q 020104          154 DVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLN  230 (331)
Q Consensus       154 ~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (331)
                              .+....|+.+|.....+.+.++.++   +++++.+-||.+..|-.... .............  .+++    
T Consensus       141 --------~~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~m~~~~-~~~~~~~~~~~~~--~Plg----  205 (242)
T 4b79_A          141 --------SADRPAYSASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGL-KADVEATRRIMQR--TPLA----  205 (242)
T ss_dssp             --------CSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCC------CCCHHHHHHHHHT--CTTC----
T ss_pred             --------CCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCCChhhhcc-cCCHHHHHHHHhc--CCCC----
Confidence                    1224579999999999999888765   79999999999987743221 1111111111111  2232    


Q ss_pred             ccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          231 TSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       231 ~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                       .+...+|+|.++++++....  ..| .+.++|.
T Consensus       206 -R~g~peeiA~~v~fLaSd~a~~iTG~~l~VDGG  238 (242)
T 4b79_A          206 -RWGEAPEVASAAAFLCGPGASFVTGAVLAVDGG  238 (242)
T ss_dssp             -SCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred             -CCcCHHHHHHHHHHHhCchhcCccCceEEECcc
Confidence             67889999999999997654  234 4556554

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=99.87  E-value=8.3e-21  Score=157.95  Aligned_cols=223  Identities=16%  Similarity=0.098  Sum_probs=155.5

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHH
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      |+..+|++|||||++.||+++++.|++.|++|++++|+.     +..+.. +.+.+   ...++.++.+|+.|++++.++
T Consensus         3 ~sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~-----~~~~~~~~~i~~---~g~~~~~~~~Dvt~~~~v~~~   74 (254)
T 4fn4_A            3 QSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLE-----DRLNQIVQELRG---MGKEVLGVKADVSKKKDVEEF   74 (254)
T ss_dssp             GGGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH-----HHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHH
Confidence            445678999999999999999999999999999999987     222221 22222   235788999999999988877


Q ss_pred             hc-------CccEEEEecccCCC-------CCCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCC
Q 020104           80 IA-------GCTGVLHVATPVDF-------EDKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYND  141 (331)
Q Consensus        80 ~~-------~~d~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~  141 (331)
                      ++       ++|++||+||....       +.+++ +..+++|+.++..+.+++.    +.+ -.++|++||......  
T Consensus        75 ~~~~~~~~G~iDiLVNNAGi~~~~~~~~~~~~e~~-~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IVnisS~~g~~~--  150 (254)
T 4fn4_A           75 VRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELW-ERVLAVNLYSAFYSSRAVIPIMLKQG-KGVIVNTASIAGIRG--  150 (254)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCTTCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTCS--
T ss_pred             HHHHHHHcCCCCEEEECCcccCCCCChhhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEechhhcCC--
Confidence            64       68999999985431       12234 3789999999877777665    445 469999999765421  


Q ss_pred             CCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHH
Q 020104          142 KDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALI  218 (331)
Q Consensus       142 ~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~  218 (331)
                                          .+....|+.+|.....+.+.++.+.   +++++.+-||.+-.+.........-.......
T Consensus       151 --------------------~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~  210 (254)
T 4fn4_A          151 --------------------GFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKPSELGMRTLT  210 (254)
T ss_dssp             --------------------SSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSCTTSCSSCCHHHHHHHH
T ss_pred             --------------------CCCChHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCCCCcccccccCCcHHHHHHHH
Confidence                                1224579999999999999888765   79999999999987643322211111111111


Q ss_pred             hCCCcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          219 LGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       219 ~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                      . .....+     .+...+|+|.++++++....  ..| .+.++|.
T Consensus       211 ~-~~~~~~-----R~g~pediA~~v~fLaSd~a~~iTG~~i~VDGG  250 (254)
T 4fn4_A          211 K-LMSLSS-----RLAEPEDIANVIVFLASDEASFVNGDAVVVDGG  250 (254)
T ss_dssp             H-HHTTCC-----CCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             h-cCCCCC-----CCcCHHHHHHHHHHHhCchhcCCcCCEEEeCCC
Confidence            1 111122     56789999999999997544  244 4556543

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=99.86  E-value=2.2e-21  Score=166.23  Aligned_cols=200  Identities=14%  Similarity=0.057  Sum_probs=143.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|+||||||+|+||+++++.|+++|++|++++|+.     +..+.. ..+.+..  ..++.++.+|+.|.+++.++++ 
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~v~~~~~~   99 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK-----ETLQKVVSHCLELG--AASAHYIAGTMEDMTFAEQFVAQ   99 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHHHT--CSEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHHHhC--CCceEEEeCCCCCHHHHHHHHHH
Confidence            357899999999999999999999999999999987     222211 1111111  1368899999999988887764 


Q ss_pred             ------CccEEEEe-cccCCCC--CCCh--hhHHHHHHHHHHHHHHHHHHhc---CCccEEEEecccceeecCCCCCCcc
Q 020104           82 ------GCTGVLHV-ATPVDFE--DKEP--EEVITQRAINGTLGILKSCLKS---GTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 ------~~d~Vih~-a~~~~~~--~~~~--~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                            ++|+|||+ |+.....  ..+.  .+..+++|+.++.++++++...   + .+++|++||...+..        
T Consensus       100 ~~~~~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~g~iv~isS~~~~~~--------  170 (286)
T 1xu9_A          100 AGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS-NGSIVVVSSLAGKVA--------  170 (286)
T ss_dssp             HHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEEGGGTSC--------
T ss_pred             HHHHcCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHC-CCEEEEECCcccccC--------
Confidence                  79999999 4543321  1111  1368899999999999887643   2 369999999775521        


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc-----CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH-----GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~-----~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                    .++...|+.+|.+.+.+++.++.+.     ++++++++||.+.++...           .. .. .
T Consensus       171 --------------~~~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~~~~-----------~~-~~-~  223 (286)
T 1xu9_A          171 --------------YPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAM-----------KA-VS-G  223 (286)
T ss_dssp             --------------CTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHHHH-----------HH-SC-G
T ss_pred             --------------CCCccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCChhHH-----------Hh-cc-c
Confidence                          1234589999999999998877654     799999999998765210           00 00 0


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD  251 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~  251 (331)
                      .     ....+++.+|+|++++.++..+.
T Consensus       224 ~-----~~~~~~~~~~vA~~i~~~~~~~~  247 (286)
T 1xu9_A          224 I-----VHMQAAPKEECALEIIKGGALRQ  247 (286)
T ss_dssp             G-----GGGGCBCHHHHHHHHHHHHHTTC
T ss_pred             c-----ccCCCCCHHHHHHHHHHHHhcCC
Confidence            0     01357899999999999987654

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=99.85  E-value=3e-20  Score=159.48  Aligned_cols=218  Identities=14%  Similarity=0.047  Sum_probs=151.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEe-cCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCc-------
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTV-RSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPD-------   74 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~-------   74 (331)
                      .+|++|||||+|+||+++++.|+++|++|++++ |+.     ...+.. ..+..  ....++.++.+|+.|.+       
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~-----~~~~~~~~~l~~--~~~~~~~~~~~Dl~~~~~~~~~~~   80 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSA-----AEANALSATLNA--RRPNSAITVQADLSNVATAPVSGA   80 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH-----HHHHHHHHHHHH--HSTTCEEEEECCCSSSCBCCCC--
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCH-----HHHHHHHHHHhh--hcCCeeEEEEeecCCccccccccc
Confidence            357899999999999999999999999999999 876     222211 11110  01246889999999999       


Q ss_pred             ----------cHHHHhc-------CccEEEEecccCCCCC-------------------CChhhHHHHHHHHHHHHHHHH
Q 020104           75 ----------GFDAAIA-------GCTGVLHVATPVDFED-------------------KEPEEVITQRAINGTLGILKS  118 (331)
Q Consensus        75 ----------~~~~~~~-------~~d~Vih~a~~~~~~~-------------------~~~~~~~~~~n~~~~~~l~~~  118 (331)
                                ++.++++       ++|++||+||......                   .+..+..+++|+.++..++++
T Consensus        81 ~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~  160 (291)
T 1e7w_A           81 DGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKA  160 (291)
T ss_dssp             --CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             ccccccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHH
Confidence                      8887765       6899999998654211                   111236889999999999988


Q ss_pred             HHhc---CC------ccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---
Q 020104          119 CLKS---GT------VKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---  186 (331)
Q Consensus       119 ~~~~---~~------~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---  186 (331)
                      +...   ..      ..++|++||...+..                      .++...|+.+|...+.+.+.++.+.   
T Consensus       161 ~~~~m~~~~~~~~~~~g~Iv~isS~~~~~~----------------------~~~~~~Y~asKaa~~~l~~~la~e~~~~  218 (291)
T 1e7w_A          161 FAHRVAGTPAKHRGTNYSIINMVDAMTNQP----------------------LLGYTIYTMAKGALEGLTRSAALELAPL  218 (291)
T ss_dssp             HHHHHHTSCGGGSCSCEEEEEECCTTTTSC----------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHhcCCCCCCCCcEEEEEechhhcCC----------------------CCCCchhHHHHHHHHHHHHHHHHHHHhc
Confidence            7642   11      369999999776521                      1224579999999999999888764   


Q ss_pred             CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          187 GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       187 ~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                      +++++.++||.+..+. .  ..   .......... ..+.    ..+...+|+|+++++++..+.  ..| .+++.++
T Consensus       219 gI~vn~v~PG~v~T~~-~--~~---~~~~~~~~~~-~p~~----~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdGG  285 (291)
T 1e7w_A          219 QIRVNGVGPGLSVLVD-D--MP---PAVWEGHRSK-VPLY----QRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGG  285 (291)
T ss_dssp             TEEEEEEEESSBCCGG-G--SC---HHHHHHHHTT-CTTT----TSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             CeEEEEEeeCCccCCc-c--CC---HHHHHHHHhh-CCCC----CCCCCHHHHHHHHHHHhCCcccCccCcEEEECCC
Confidence            7999999999997664 2  11   1111111111 1110    046789999999999997533  234 5566554

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=99.85  E-value=1.2e-20  Score=159.36  Aligned_cols=210  Identities=16%  Similarity=0.138  Sum_probs=140.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+.     +..+.. ..+...   ..++.++.+|+.|.+++.++++ 
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~   75 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHL-----DTLRVVAQEAQSL---GGQCVPVVCDSSQESEVRSLFEQ   75 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHHH---SSEEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHHc---CCceEEEECCCCCHHHHHHHHHH
Confidence            357899999999999999999999999999999986     222111 111111   2468889999999988777653 


Q ss_pred             -------CccEEEEecc--cC-------C----CCCCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEeccccee
Q 020104           82 -------GCTGVLHVAT--PV-------D----FEDKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAV  137 (331)
Q Consensus        82 -------~~d~Vih~a~--~~-------~----~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~  137 (331)
                             ++|++||+|+  ..       .    ....++ +..+++|+.++..+.+++.    +.+ ..++|++||...+
T Consensus        76 ~~~~~~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~-~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~  153 (260)
T 2qq5_A           76 VDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMW-DDINNVGLRGHYFCSVYGARLMVPAG-QGLIVVISSPGSL  153 (260)
T ss_dssp             HHHHHTTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHH-HHHHTTTTHHHHHHHHHHHHHHGGGT-CCEEEEECCGGGT
T ss_pred             HHHhcCCCceEEEECCccccccccccCCCccccCCHHHH-HHHHhhcchhHHHHHHHHHHHHhhcC-CcEEEEEcChhhc
Confidence                   4799999994  21       1    112223 3778889888877666554    445 5799999997654


Q ss_pred             ecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCccHHHH
Q 020104          138 FYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGSVRSS  214 (331)
Q Consensus       138 ~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~  214 (331)
                      .                       ..+...|+.+|.+.+.+.+.++.+   +++++++++||.+.++.............
T Consensus       154 ~-----------------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~  210 (260)
T 2qq5_A          154 Q-----------------------YMFNVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTELLKEHMAKEEVLQ  210 (260)
T ss_dssp             S-----------------------CCSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCCSCTTTC-----------
T ss_pred             C-----------------------CCCCCchHHHHHHHHHHHHHHHHHhccCCeEEEEEecCccccHHHHHhhccccccc
Confidence            2                       012357999999999999988865   48999999999998774321100000000


Q ss_pred             HHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC
Q 020104          215 LALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD  251 (331)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~  251 (331)
                      ..........+     ..+...+|+|+++++++..+.
T Consensus       211 ~~~~~~~~~~~-----~~~~~pe~va~~v~~l~s~~~  242 (260)
T 2qq5_A          211 DPVLKQFKSAF-----SSAETTELSGKCVVALATDPN  242 (260)
T ss_dssp             ----------------CHHHHHHHHHHHHHHHHTCTT
T ss_pred             hhHHHHHHhhh-----ccCCCHHHHHHHHHHHhcCcc
Confidence            00000000011     134689999999999998653

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=99.85  E-value=4.7e-20  Score=154.16  Aligned_cols=223  Identities=21%  Similarity=0.207  Sum_probs=154.3

Q ss_pred             CCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            2 EEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         2 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      ...+|++|||||++.||+++++.|++.|.+|++++|+.     +..+..+.+.+.   ..++.++.+|+.|+++++++++
T Consensus         4 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~-----~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~v~   75 (258)
T 4gkb_A            4 NLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHA-----PDGAFLDALAQR---QPRATYLPVELQDDAQCRDAVA   75 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC-----CCHHHHHHHHHH---CTTCEEEECCTTCHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCc-----ccHHHHHHHHhc---CCCEEEEEeecCCHHHHHHHHH
Confidence            34678999999999999999999999999999999987     333333322221   2578899999999988877764


Q ss_pred             -------CccEEEEecccCCC-----CCCChhhHHHHHHHHHHHHHHHHHHhc---CCccEEEEecccceeecCCCCCCc
Q 020104           82 -------GCTGVLHVATPVDF-----EDKEPEEVITQRAINGTLGILKSCLKS---GTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -------~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                             ++|++||+||....     ..+++ +..+++|+.++..+.+++..+   + -.++|++||..... +      
T Consensus        76 ~~~~~~G~iDiLVNnAGi~~~~~~~~~~e~~-~~~~~vNl~g~~~~~~~~~p~m~~~-~G~IVnisS~~~~~-~------  146 (258)
T 4gkb_A           76 QTIATFGRLDGLVNNAGVNDGIGLDAGRDAF-VASLERNLIHYYAMAHYCVPHLKAT-RGAIVNISSKTAVT-G------  146 (258)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCTTSCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECCTHHHH-C------
T ss_pred             HHHHHhCCCCEEEECCCCCCCCCccCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhc-CCeEEEEeehhhcc-C------
Confidence                   68999999986431     12233 378899999988888776532   2 26999999977652 1      


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCcc--HHHHHHHHhCC
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGS--VRSSLALILGN  221 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~--~~~~~~~~~~~  221 (331)
                                     .+....|+.+|.....+.+.++.+.   +++++.+.||.+..+.........  ...........
T Consensus       147 ---------------~~~~~~Y~asKaav~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~  211 (258)
T 4gkb_A          147 ---------------QGNTSGYCASKGAQLALTREWAVALREHGVRVNAVIPAEVMTPLYRNWIATFEDPEAKLAEIAAK  211 (258)
T ss_dssp             ---------------CSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCSCC-----------CHHHHHHTT
T ss_pred             ---------------CCCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCChhHhhhhhcccChHHHHHHHHhc
Confidence                           1224579999999999999888764   899999999999876433211000  00011111111


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                       .+++    ..+...+|+|.++++++....  ..| .+.++|.
T Consensus       212 -~plg----~R~g~peeiA~~v~fLaS~~a~~iTG~~i~VDGG  249 (258)
T 4gkb_A          212 -VPLG----RRFTTPDEIADTAVFLLSPRASHTTGEWLFVDGG  249 (258)
T ss_dssp             -CTTT----TSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             -CCCC----CCCcCHHHHHHHHHHHhCchhcCccCCeEEECCC
Confidence             1111    257789999999999997544  244 5566554

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=99.85  E-value=6.5e-21  Score=159.85  Aligned_cols=198  Identities=19%  Similarity=0.182  Sum_probs=141.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCC--CCCccHHHHh
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADL--SHPDGFDAAI   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~--~~~~~~~~~~   80 (331)
                      .+|++|||||+|+||++++++|+++|++|++++|+.     ...+.. ..+....  ..+..++.+|+  .|.+++.+++
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~~~--~~~~~~~~~d~d~~~~~~~~~~~   85 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTE-----ASLAEVSDQIKSAG--QPQPLIIALNLENATAQQYRELA   85 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHHTT--SCCCEEEECCTTTCCHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCH-----HHHHHHHHHHHhcC--CCCceEEEeccccCCHHHHHHHH
Confidence            357899999999999999999999999999999987     222221 1121111  14566777777  8887777665


Q ss_pred             c-------CccEEEEecccCCC-------CCCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCC
Q 020104           81 A-------GCTGVLHVATPVDF-------EDKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDK  142 (331)
Q Consensus        81 ~-------~~d~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~  142 (331)
                      +       ++|++||+|+....       ..+++ +..+++|+.++.++++++.    +.+ ..++|++||...+..   
T Consensus        86 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~~---  160 (247)
T 3i1j_A           86 ARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDF-MQVMHVNVNATFMLTRALLPLLKRSE-DASIAFTSSSVGRKG---  160 (247)
T ss_dssp             HHHHHHHSCCSEEEECCCCCCCCSCGGGSCHHHH-HHHHHHHTHHHHHHHHHHHHHHTTSS-SEEEEEECCGGGTSC---
T ss_pred             HHHHHhCCCCCEEEECCccCCCCCCcccCCHHHH-HHHHHHhhHHHHHHHHHHHHHHHhCC-CCeEEEEcchhhcCC---
Confidence            4       78999999996431       11223 3788999999999999884    444 579999999765521   


Q ss_pred             CCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc----CCcEEEeccCceeCCCCCCCCCccHHHHHHHH
Q 020104          143 DVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH----GLDLVTLIPSMVVGPFICPKFAGSVRSSLALI  218 (331)
Q Consensus       143 ~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~----~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~  218 (331)
                                         .++...|+.+|.+.+.+++.++.+.    +++++.++||.+..+-            ....
T Consensus       161 -------------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~i~v~~v~PG~v~t~~------------~~~~  209 (247)
T 3i1j_A          161 -------------------RANWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTGM------------RAQA  209 (247)
T ss_dssp             -------------------CTTCHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEECCCCSSHH------------HHHH
T ss_pred             -------------------CCCcchhHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCcccCcc------------chhc
Confidence                               1224579999999999999988763    6899999999886541            1111


Q ss_pred             hCCCcccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          219 LGNREEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       219 ~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      .....      ...+...+|+++++++++...
T Consensus       210 ~~~~~------~~~~~~p~dva~~~~~l~s~~  235 (247)
T 3i1j_A          210 YPDEN------PLNNPAPEDIMPVYLYLMGPD  235 (247)
T ss_dssp             STTSC------GGGSCCGGGGTHHHHHHHSGG
T ss_pred             ccccC------ccCCCCHHHHHHHHHHHhCch
Confidence            11111      125677899999999999754

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=99.85  E-value=1.4e-20  Score=163.95  Aligned_cols=220  Identities=18%  Similarity=0.180  Sum_probs=148.1

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccc-cCC---CCCCCcEEEEeCCCCCCccHHHHh
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFL-KNL---PGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      +|+||||||+|+||++++++|+++|++|+++.|+.     ...+..... ...   .....++.++.+|+.|.+++.+++
T Consensus         2 ~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~   76 (327)
T 1jtv_A            2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATL-----RDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAAR   76 (327)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEE-----SCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeec-----CcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHH
Confidence            47899999999999999999999999999988876     222222111 100   111246899999999999999988


Q ss_pred             cC-----ccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCCCC
Q 020104           81 AG-----CTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        81 ~~-----~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                      +.     +|+|||+|+.....      ..++ +..+++|+.++.++++++    ++.+ ..++|++||...+...     
T Consensus        77 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~p~m~~~~-~g~IV~isS~~~~~~~-----  149 (327)
T 1jtv_A           77 ERVTEGRVDVLVCNAGLGLLGPLEALGEDAV-ASVLDVNVVGTVRMLQAFLPDMKRRG-SGRVLVTGSVGGLMGL-----  149 (327)
T ss_dssp             HTCTTSCCSEEEECCCCCCCSCGGGSCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEEGGGTSCC-----
T ss_pred             HHHhcCCCCEEEECCCcCCCCchhhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEECCcccccCC-----
Confidence            64     89999999864321      1123 378999999999999986    4445 6799999997765210     


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH---cCCcEEEeccCceeCCCCCCCCCcc----------HH
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE---HGLDLVTLIPSMVVGPFICPKFAGS----------VR  212 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~----------~~  212 (331)
                                       +....|+.+|.+.+.+++.++.+   +++++++++||.|.++.........          ..
T Consensus       150 -----------------~~~~~Y~aSK~a~~~~~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~  212 (327)
T 1jtv_A          150 -----------------PFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTF  212 (327)
T ss_dssp             -----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-------CCHHHHHHTSCHHHH
T ss_pred             -----------------CCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCcccChHHhhhhhcchhhhccCCHHHH
Confidence                             12457999999999999998875   5899999999999876432211100          00


Q ss_pred             HHHHHHhCC-CcccccCCCccceeHHHHHHHHHHhhcCCCCCceEE
Q 020104          213 SSLALILGN-REEYGFLLNTSMVHVDDVARAHIFLLEYPDAKGRYI  257 (331)
Q Consensus       213 ~~~~~~~~~-~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~  257 (331)
                      ......... ...+.    +-....+|+|+++++++..+.....|.
T Consensus       213 ~~~~~~~~~~~~~~~----~~~~~pedvA~~i~~l~~~~~~~~~~~  254 (327)
T 1jtv_A          213 HRFYQYLAHSKQVFR----EAAQNPEEVAEVFLTALRAPKPTLRYF  254 (327)
T ss_dssp             HHHHHHHHHHHHHHH----HHCBCHHHHHHHHHHHHHCSSCCSEEE
T ss_pred             HHHHHHHHHHHHhhh----hcCCCHHHHHHHHHHHHcCCCCCeEEE
Confidence            000000000 00000    012589999999999998765444554

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=99.84  E-value=7.8e-20  Score=158.50  Aligned_cols=219  Identities=18%  Similarity=0.190  Sum_probs=146.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcc-ccccccCCCCCCCcEEEEeCCCCCC-ccHHHHhc-
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSK-DLSFLKNLPGASERLRIFHADLSHP-DGFDAAIA-   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~-   81 (331)
                      +|+||||||+|+||.+++++|+++|++|++++|+.     .... ....+.+.  ...++.++.+|+.|. +++..+++ 
T Consensus        12 ~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~-----~~~~~~~~~l~~~--~~~~~~~~~~Dl~~~~~~v~~~~~~   84 (311)
T 3o26_A           12 RRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDV-----TKGHEAVEKLKNS--NHENVVFHQLDVTDPIATMSSLADF   84 (311)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHTT--TCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHHhc--CCCceEEEEccCCCcHHHHHHHHHH
Confidence            46899999999999999999999999999999987     2221 12222222  124789999999998 76666654 


Q ss_pred             ------CccEEEEecccCCCC------------------------------------CCChhhHHHHHHHHHHHHHHHHH
Q 020104           82 ------GCTGVLHVATPVDFE------------------------------------DKEPEEVITQRAINGTLGILKSC  119 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~------------------------------------~~~~~~~~~~~n~~~~~~l~~~~  119 (331)
                            ++|+|||+||.....                                    ..++ +..+++|+.++.++++++
T Consensus        85 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~  163 (311)
T 3o26_A           85 IKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELA-EECLKINYNGVKSVTEVL  163 (311)
T ss_dssp             HHHHHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHH-HHHHHHHTHHHHHHHHHH
T ss_pred             HHHhCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhh-hhheeeeeehHHHHHHHh
Confidence                  799999999975321                                    1112 256899999988888877


Q ss_pred             Hh----cCCccEEEEecccceeecCCCCC----CcccCCCCCChh-----------------hhhhcCCCCchhHhhHHH
Q 020104          120 LK----SGTVKRVVYTSSNAAVFYNDKDV----DMMDETFWSDVD-----------------YIRKLDSWGKSYAISKTL  174 (331)
Q Consensus       120 ~~----~~~~~~~v~~SS~~~~~~~~~~~----~~~~E~~~~~~~-----------------~~~~~~~~~~~Y~~~K~~  174 (331)
                      ..    .+ ..++|++||...+.......    ...+++.+....                 .....+++...|+.+|.+
T Consensus       164 ~~~l~~~~-~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a  242 (311)
T 3o26_A          164 IPLLQLSD-SPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKAC  242 (311)
T ss_dssp             HHHHTTSS-SCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTTCCSSCHHHHHHHHH
T ss_pred             hHhhccCC-CCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccccCcccchhhHHHHHH
Confidence            53    34 57999999977653211100    000000000000                 000011334689999999


Q ss_pred             HHHHHHHHHHHc-CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC--
Q 020104          175 TERAALEFAEEH-GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--  251 (331)
Q Consensus       175 ~e~~~~~~~~~~-~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--  251 (331)
                      .+.+++.++.++ +++++.+.||.|..+-...                         ......++.++.++.++..+.  
T Consensus       243 ~~~~~~~la~e~~~i~v~~v~PG~v~T~~~~~-------------------------~~~~~~~~~a~~~~~~~~~~~~~  297 (311)
T 3o26_A          243 LNAYTRVLANKIPKFQVNCVCPGLVKTEMNYG-------------------------IGNYTAEEGAEHVVRIALFPDDG  297 (311)
T ss_dssp             HHHHHHHHHHHCTTSEEEEECCCSBCSGGGTT-------------------------CCSBCHHHHHHHHHHHHTCCSSC
T ss_pred             HHHHHHHHHhhcCCceEEEecCCceecCCcCC-------------------------CCCCCHHHHHHHHHHHHhCCCCC
Confidence            999999999886 6999999999997653111                         022467889999988877543  


Q ss_pred             CCceEE
Q 020104          252 AKGRYI  257 (331)
Q Consensus       252 ~~~~~~  257 (331)
                      .++.|.
T Consensus       298 ~~g~~~  303 (311)
T 3o26_A          298 PSGFFY  303 (311)
T ss_dssp             CCSCEE
T ss_pred             CCceEe
Confidence            244544

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=99.84  E-value=5.3e-21  Score=159.23  Aligned_cols=219  Identities=11%  Similarity=0.029  Sum_probs=152.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|++|||||++.||+++++.|++.|++|++.+|+.     +..+. .+.+.+   ...++..+.+|+.|+++++++++ 
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~-----~~~~~~~~~l~~---~g~~~~~~~~Dv~~~~~v~~~~~~   79 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRA-----TLLAESVDTLTR---KGYDAHGVAFDVTDELAIEAAFSK   79 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCH-----HHHHHHHHHHHH---TTCCEEECCCCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHHh---cCCcEEEEEeeCCCHHHHHHHHHH
Confidence            468999999999999999999999999999999986     22221 122222   23578899999999998887764 


Q ss_pred             ------CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|++||+||....      +.+++. ..+++|+.++..+.+++.    +.+.-.++|++||......      
T Consensus        80 ~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~-~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~~------  152 (255)
T 4g81_D           80 LDAEGIHVDILINNAGIQYRKPMVELELENWQ-KVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQAA------  152 (255)
T ss_dssp             HHHTTCCCCEEEECCCCCCCCCGGGCCHHHHH-HHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSB------
T ss_pred             HHHHCCCCcEEEECCCCCCCCChhhCCHHHHH-HHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcCC------
Confidence                  58999999986442      222344 889999999888887654    2221469999999775421      


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                      .+....|+.+|.....+.+.++.+.   +++++.+-||.+..+........  ......+.. .
T Consensus       153 ----------------~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~--~~~~~~~~~-~  213 (255)
T 4g81_D          153 ----------------RPTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNTALIED--KQFDSWVKS-S  213 (255)
T ss_dssp             ----------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGHHHHTC--HHHHHHHHH-H
T ss_pred             ----------------CCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCCchhhcccCC--HHHHHHHHh-C
Confidence                            1224579999999999999888765   89999999999976632110000  011111111 1


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                      .+++     .+...+|+|.++++++....  ..| .+.++|.
T Consensus       214 ~Pl~-----R~g~pediA~~v~fL~S~~a~~iTG~~i~VDGG  250 (255)
T 4g81_D          214 TPSQ-----RWGRPEELIGTAIFLSSKASDYINGQIIYVDGG  250 (255)
T ss_dssp             STTC-----SCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             CCCC-----CCcCHHHHHHHHHHHhCchhCCCcCCEEEECCC
Confidence            2222     56788999999999997543  234 5567654

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=99.84  E-value=5.4e-20  Score=154.58  Aligned_cols=219  Identities=18%  Similarity=0.135  Sum_probs=151.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|.+|||||++.||+++++.|++.|++|++++|+.     +..+..  ..++   ..++..+.+|+.|+++++++++  
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~-----~~l~~~--~~~~---g~~~~~~~~Dv~~~~~v~~~~~~~   97 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRK-----DVLDAA--IAEI---GGGAVGIQADSANLAELDRLYEKV   97 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHH--HHHH---CTTCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHH--HHHc---CCCeEEEEecCCCHHHHHHHHHHH
Confidence            357899999999999999999999999999999987     222221  1122   2467889999999998887764  


Q ss_pred             -----CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHhc-CCccEEEEecccceeecCCCCCCcccC
Q 020104           82 -----GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLKS-GTVKRVVYTSSNAAVFYNDKDVDMMDE  149 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~~~~~E  149 (331)
                           ++|++||+||....      +.+++. ..+++|+.++..+.+++... ..-.++|++||......          
T Consensus        98 ~~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~-~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~~~----------  166 (273)
T 4fgs_A           98 KAEAGRIDVLFVNAGGGSMLPLGEVTEEQYD-DTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGSTG----------  166 (273)
T ss_dssp             HHHHSCEEEEEECCCCCCCCCTTSCCHHHHH-HHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGGSC----------
T ss_pred             HHHcCCCCEEEECCCCCCCCChhhccHHHHH-HHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhccC----------
Confidence                 58999999985441      222344 89999999999999988754 11358999999765421          


Q ss_pred             CCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccH---HHHHHHHhCCCc
Q 020104          150 TFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSV---RSSLALILGNRE  223 (331)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~---~~~~~~~~~~~~  223 (331)
                                  .+....|+.+|.....+.+.++.+.   +++++.+.||.+..+..........   ......+. ...
T Consensus       167 ------------~~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~-~~~  233 (273)
T 4fgs_A          167 ------------TPAFSVYAASKAALRSFARNWILDLKDRGIRINTLSPGPTETTGLVELAGKDPVQQQGLLNALA-AQV  233 (273)
T ss_dssp             ------------CTTCHHHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEECSBCC---------CHHHHHHHHHHHH-HHS
T ss_pred             ------------CCCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHhhccCchhhHHHHHHHH-hcC
Confidence                        1124579999999999999998876   7999999999998765322111110   11111111 112


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                      +++     .+...+|+|.++++++....  ..| .+.++|+
T Consensus       234 Plg-----R~g~peeiA~~v~FLaSd~a~~iTG~~i~VDGG  269 (273)
T 4fgs_A          234 PMG-----RVGRAEEVAAAALFLASDDSSFVTGAELFVDGG  269 (273)
T ss_dssp             TTS-----SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             CCC-----CCcCHHHHHHHHHHHhCchhcCccCCeEeECcC
Confidence            222     67789999999999997644  244 4556554

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=99.84  E-value=2.8e-21  Score=168.42  Aligned_cols=181  Identities=15%  Similarity=0.047  Sum_probs=127.6

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCC-------eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCC
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGY-------SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHP   73 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   73 (331)
                      |+++ |||+||||+||||++++..|+++|+       +|+++++.....  ........+..     ..+.++ +|+.+.
T Consensus         1 m~~~-mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~--~~~g~~~dl~~-----~~~~~~-~di~~~   71 (327)
T 1y7t_A            1 MKAP-VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMK--ALEGVVMELED-----CAFPLL-AGLEAT   71 (327)
T ss_dssp             CCCC-EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHH--HHHHHHHHHHT-----TTCTTE-EEEEEE
T ss_pred             CCCC-CEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchh--hccchhhhhhc-----cccccc-CCeEec
Confidence            5543 5899999999999999999999886       899988753000  00000111111     111222 577776


Q ss_pred             ccHHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCCCCcccCCCC
Q 020104           74 DGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKDVDMMDETFW  152 (331)
Q Consensus        74 ~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~E~~~  152 (331)
                      .++.++++++|+|||+|+.......++. +.++.|+.+++++++++++.+ ...+++++|+....      ..++.++..
T Consensus        72 ~~~~~a~~~~D~Vih~Ag~~~~~~~~~~-~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~------~~~~~~~~~  144 (327)
T 1y7t_A           72 DDPKVAFKDADYALLVGAAPRKAGMERR-DLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANT------NALIAYKNA  144 (327)
T ss_dssp             SCHHHHTTTCSEEEECCCCCCCTTCCHH-HHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH------HHHHHHHTC
T ss_pred             cChHHHhCCCCEEEECCCcCCCCCCCHH-HHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhh------hHHHHHHHc
Confidence            7788889999999999997654334555 899999999999999999974 23488887764310      011111110


Q ss_pred             CChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCC
Q 020104          153 SDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFIC  204 (331)
Q Consensus       153 ~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~  204 (331)
                             +..+|.+.|+.+|+.+|++...+++.++++.+++||++|||++..
T Consensus       145 -------~~~~p~~~yg~tkl~~er~~~~~a~~~g~~~~~vr~~~V~G~h~~  189 (327)
T 1y7t_A          145 -------PGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSS  189 (327)
T ss_dssp             -------TTSCGGGEEECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST
T ss_pred             -------CCCChhheeccchHHHHHHHHHHHHHhCcChhheeeeEEEcCCCC
Confidence                   012456789999999999999999888999999999999998654

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=99.84  E-value=5.7e-20  Score=151.55  Aligned_cols=218  Identities=16%  Similarity=0.149  Sum_probs=154.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|++|||||++.||.++++.|++.|.+|++.+|+.     . .+..+.+.+.   ..++..+.+|+.|+++++++++  
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~-----~-~~~~~~~~~~---g~~~~~~~~Dv~d~~~v~~~~~~g   78 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRA-----P-DETLDIIAKD---GGNASALLIDFADPLAAKDSFTDA   78 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC-----C-HHHHHHHHHT---TCCEEEEECCTTSTTTTTTSSTTT
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCc-----H-HHHHHHHHHh---CCcEEEEEccCCCHHHHHHHHHhC
Confidence            468999999999999999999999999999999986     2 2223333222   2578899999999998888775  


Q ss_pred             CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCcccCCC
Q 020104           82 GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDMMDETF  151 (331)
Q Consensus        82 ~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~  151 (331)
                      ++|++||+||....      +.+++. ..+++|+.++..+.+++.    +.+.-.++|++||......            
T Consensus        79 ~iDiLVNNAGi~~~~~~~~~~~~~w~-~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~g------------  145 (247)
T 4hp8_A           79 GFDILVNNAGIIRRADSVEFSELDWD-EVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQG------------  145 (247)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHH-HHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSC------------
T ss_pred             CCCEEEECCCCCCCCCcccccHHHHH-HHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCCC------------
Confidence            69999999986442      223444 889999999988888654    3332369999999765421            


Q ss_pred             CCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccC
Q 020104          152 WSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFL  228 (331)
Q Consensus       152 ~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (331)
                                .+....|+.+|.....+.+.++.++   +++++.+-||.+..+....... . ......+. ...+++  
T Consensus       146 ----------~~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~~~~~~~~-~-~~~~~~~~-~~~Plg--  210 (247)
T 4hp8_A          146 ----------GIRVPSYTAAKHGVAGLTKLLANEWAAKGINVNAIAPGYIETNNTEALRA-D-AARNKAIL-ERIPAG--  210 (247)
T ss_dssp             ----------CSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHT-S-HHHHHHHH-TTCTTS--
T ss_pred             ----------CCCChHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCcchhhccc-C-HHHHHHHH-hCCCCC--
Confidence                      1124479999999999999888765   7999999999997663211000 0 00111111 112222  


Q ss_pred             CCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          229 LNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       229 ~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                         .+...+|+|.++++++....  ..| .+.++|.
T Consensus       211 ---R~g~peeiA~~v~fLaSd~a~~iTG~~i~VDGG  243 (247)
T 4hp8_A          211 ---RWGHSEDIAGAAVFLSSAAADYVHGAILNVDGG  243 (247)
T ss_dssp             ---SCBCTHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred             ---CCcCHHHHHHHHHHHhCchhcCCcCCeEEECcc
Confidence               67789999999999997654  234 4556554

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=99.83  E-value=3.1e-20  Score=169.70  Aligned_cols=226  Identities=18%  Similarity=0.154  Sum_probs=155.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCe-EEEEecCCCCcccCCccccccc-cCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYS-VTTTVRSELDPEHRNSKDLSFL-KNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      .+++||||||+|+||.+++++|+++|++ |++++|+..     .......+ .++.....++.++.+|+.|.+++.++++
T Consensus       225 ~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~-----~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~  299 (486)
T 2fr1_A          225 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGP-----DADGAGELVAELEALGARTTVAACDVTDRESVRELLG  299 (486)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGG-----GSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCC-----CcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHH
Confidence            3578999999999999999999999985 999999862     11111111 1111112478899999999999999887


Q ss_pred             C------ccEEEEecccCCCC---CC--ChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCC
Q 020104           82 G------CTGVLHVATPVDFE---DK--EPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDET  150 (331)
Q Consensus        82 ~------~d~Vih~a~~~~~~---~~--~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~  150 (331)
                      +      +|+|||+|+.....   ..  +..+..+++|+.++.++.++++..+ .++||++||...+...          
T Consensus       300 ~i~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~-~~~~V~~SS~a~~~g~----------  368 (486)
T 2fr1_A          300 GIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELD-LTAFVLFSSFASAFGA----------  368 (486)
T ss_dssp             TSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSC-CSEEEEEEEHHHHTCC----------
T ss_pred             HHHhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCC-CCEEEEEcChHhcCCC----------
Confidence            5      49999999975422   11  1223678899999999999999887 8899999997655311          


Q ss_pred             CCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCC
Q 020104          151 FWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLN  230 (331)
Q Consensus       151 ~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (331)
                                  +....|+.+|...+.+...+.. .++++++++||.+.+.+.....      ..       ..+. ...
T Consensus       369 ------------~g~~~Yaaaka~l~~la~~~~~-~gi~v~~i~pG~~~~~gm~~~~------~~-------~~~~-~~g  421 (486)
T 2fr1_A          369 ------------PGLGGYAPGNAYLDGLAQQRRS-DGLPATAVAWGTWAGSGMAEGP------VA-------DRFR-RHG  421 (486)
T ss_dssp             ------------TTCTTTHHHHHHHHHHHHHHHH-TTCCCEEEEECCBC-------------------------CT-TTT
T ss_pred             ------------CCCHHHHHHHHHHHHHHHHHHh-cCCeEEEEECCeeCCCcccchh------HH-------HHHH-hcC
Confidence                        1134699999999988877654 6999999999999876422100      00       0000 011


Q ss_pred             ccceeHHHHHHHHHHhhcCCCCCceEEEeccccCHHHHHHHHHhhC
Q 020104          231 TSMVHVDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKY  276 (331)
Q Consensus       231 ~~~i~v~D~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~  276 (331)
                      ..+++.+|+++++..++..+..  .+.+.  .+.|..+...+....
T Consensus       422 ~~~i~~e~~a~~l~~~l~~~~~--~~~v~--~~d~~~~~~~~~~~~  463 (486)
T 2fr1_A          422 VIEMPPETACRALQNALDRAEV--CPIVI--DVRWDRFLLAYTAQR  463 (486)
T ss_dssp             EECBCHHHHHHHHHHHHHTTCS--SCEEC--EECHHHHHHHHTSSS
T ss_pred             CCCCCHHHHHHHHHHHHhCCCC--eEEEE--eCCHHHHhhhhcccC
Confidence            3679999999999999986542  22222  256777776655433

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=99.83  E-value=2.8e-19  Score=149.97  Aligned_cols=214  Identities=17%  Similarity=0.115  Sum_probs=146.8

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      -.+|++|||||++.||.++++.|++.|++|++++|+..     .  .   +       .....+.+|+.|.+++.++++ 
T Consensus         9 L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~-----~--~---~-------~~~~~~~~Dv~~~~~v~~~~~~   71 (261)
T 4h15_A            9 LRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARP-----E--G---L-------PEELFVEADLTTKEGCAIVAEA   71 (261)
T ss_dssp             CTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCC-----T--T---S-------CTTTEEECCTTSHHHHHHHHHH
T ss_pred             CCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCch-----h--C---C-------CcEEEEEcCCCCHHHHHHHHHH
Confidence            34589999999999999999999999999999999862     1  0   0       122367899999988877664 


Q ss_pred             ------CccEEEEecccCCC--------CCCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCC
Q 020104           82 ------GCTGVLHVATPVDF--------EDKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~--------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~  143 (331)
                            ++|++||+||....        ..+++. ..+++|+.++..+.+++.    +.+ -.++|++||.......   
T Consensus        72 ~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~-~~~~vNl~g~~~~~~~~~p~m~~~~-~G~Iv~isS~~~~~~~---  146 (261)
T 4h15_A           72 TRQRLGGVDVIVHMLGGSSAAGGGFSALSDDDWY-NELSLNLFAAVRLDRQLVPDMVARG-SGVVVHVTSIQRVLPL---  146 (261)
T ss_dssp             HHHHTSSCSEEEECCCCCCCCSSCGGGCCHHHHH-HHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSCC---
T ss_pred             HHHHcCCCCEEEECCCCCccCCCCcccCCHHHHH-HHHHHHhHHHHHHHHhhchhhhhcC-CceEEEEEehhhccCC---
Confidence                  68999999985331        112333 788999999887777654    445 4699999997654211   


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCC---------C-Ccc
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPK---------F-AGS  210 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~---------~-~~~  210 (331)
                                        +.....|+.+|.+.+.+.+.++.+.   |++++.+.||.+..+.....         . ...
T Consensus       147 ------------------~~~~~~Y~asKaal~~lt~~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~  208 (261)
T 4h15_A          147 ------------------PESTTAYAAAKAALSTYSKAMSKEVSPKGVRVVRVSPGWIETEASVRLAERLAKQAGTDLEG  208 (261)
T ss_dssp             ------------------TTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHHHHTTCCHHH
T ss_pred             ------------------CCccHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEeCCCcCCcchhhhhHHHHHhhccchhh
Confidence                              1113579999999999999888764   79999999999876521100         0 000


Q ss_pred             HHHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC--C-CceEEEeccc
Q 020104          211 VRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--A-KGRYICSSHT  262 (331)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~-~~~~~~~~~~  262 (331)
                      ........ ....++     ..+...+|+|.++++++....  . |..+.++|.-
T Consensus       209 ~~~~~~~~-~~~~Pl-----gR~g~peevA~~v~fLaS~~a~~itG~~i~VDGG~  257 (261)
T 4h15_A          209 GKKIIMDG-LGGIPL-----GRPAKPEEVANLIAFLASDRAASITGAEYTIDGGT  257 (261)
T ss_dssp             HHHHHHHH-TTCCTT-----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred             HHHHHHHH-hcCCCC-----CCCcCHHHHHHHHHHHhCchhcCccCcEEEECCcC
Confidence            00000000 111222     267899999999999997543  2 3456676653

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=99.83  E-value=1.6e-19  Score=153.33  Aligned_cols=220  Identities=12%  Similarity=0.010  Sum_probs=148.8

Q ss_pred             CCceEEEecC--cchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGG--TGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      .+|++|||||  +|+||++++++|++.|++|++++|+.     ...  ++.+.+..  ..++.++.+|+.|++++.++++
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~-----~~~--~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~   76 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR-----LRL--IQRITDRL--PAKAPLLELDVQNEEHLASLAG   76 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSC-----HHH--HHHHHTTS--SSCCCEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCh-----HHH--HHHHHHhc--CCCceEEEccCCCHHHHHHHHH
Confidence            3478999999  99999999999999999999999986     211  11111111  1357789999999998888775


Q ss_pred             ----------CccEEEEecccCCC-----------CCCChhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeec
Q 020104           82 ----------GCTGVLHVATPVDF-----------EDKEPEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFY  139 (331)
Q Consensus        82 ----------~~d~Vih~a~~~~~-----------~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~  139 (331)
                                ++|++||+|+....           ..+++ +..+++|+.++.++++++...- .-.++|++||...++ 
T Consensus        77 ~~~~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~~~-  154 (269)
T 2h7i_A           77 RVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADV-SKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRA-  154 (269)
T ss_dssp             HHHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHH-HHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSC-
T ss_pred             HHHHHhCCCCCceEEEECCccCccccccccccccCCHHHH-HHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCccccc-
Confidence                      78999999986431           11122 3678999999999999997641 025999999865421 


Q ss_pred             CCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCC----CCccHH
Q 020104          140 NDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPK----FAGSVR  212 (331)
Q Consensus       140 ~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~----~~~~~~  212 (331)
                                            .+....|+.+|.+.+.+++.++.+.   +++++.++||.+..+.....    ......
T Consensus       155 ----------------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~  212 (269)
T 2h7i_A          155 ----------------------MPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAG  212 (269)
T ss_dssp             ----------------------CTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHH
T ss_pred             ----------------------cCchHHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccchhhhccccccchhhHH
Confidence                                  1224579999999999999888764   89999999999876521100    000000


Q ss_pred             ----HHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          213 ----SSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       213 ----~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                          ........ ....+    +.+...+|+|+++++++....  ..| .+.++++
T Consensus       213 ~~~~~~~~~~~~-~~p~~----rr~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG  263 (269)
T 2h7i_A          213 AQIQLLEEGWDQ-RAPIG----WNMKDATPVAKTVCALLSDWLPATTGDIIYADGG  263 (269)
T ss_dssp             HHHHHHHHHHHH-HCTTC----CCTTCCHHHHHHHHHHHSSSCTTCCSEEEEESTT
T ss_pred             HHHHHHHHhhhc-cCCcc----cCCCCHHHHHHHHHHHhCchhccCcceEEEecCC
Confidence                00000100 01111    146788999999999997543  244 4556554

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=99.82  E-value=1e-19  Score=152.19  Aligned_cols=213  Identities=13%  Similarity=0.112  Sum_probs=137.8

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEE-e--cCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh-
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTT-V--RSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI-   80 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~-~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-   80 (331)
                      +|++|||||+|+||+++++.|+++|++|+++ +  |+.     +..+...  .++    .+.++.  |..+.+.+.+.+ 
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~-----~~~~~~~--~~~----~~~~~~--~~~~v~~~~~~~~   67 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADA-----AERQRFE--SEN----PGTIAL--AEQKPERLVDATL   67 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSH-----HHHHHHH--HHS----TTEEEC--CCCCGGGHHHHHG
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCH-----HHHHHHH--HHh----CCCccc--CHHHHHHHHHHHH
Confidence            3689999999999999999999999999999 6  876     2222111  111    122222  333333332222 


Q ss_pred             ---cCccEEEEecccCCC---C------CCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCC
Q 020104           81 ---AGCTGVLHVATPVDF---E------DKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        81 ---~~~d~Vih~a~~~~~---~------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                         .++|+|||+||....   .      .+++ +..+++|+.++.++++++.    +.+ ..++|++||...+..     
T Consensus        68 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~~~~-----  140 (244)
T 1zmo_A           68 QHGEAIDTIVSNDYIPRPMNRLPLEGTSEADI-RQMFEALSIFPILLLQSAIAPLRAAG-GASVIFITSSVGKKP-----  140 (244)
T ss_dssp             GGSSCEEEEEECCCCCTTGGGCCSTTCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCGGGTSC-----
T ss_pred             HHcCCCCEEEECCCcCCCCCCCCcccCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECChhhCCC-----
Confidence               268999999986433   1      1122 3689999999999888775    344 579999999776531     


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHH--HHHHHHh
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVR--SSLALIL  219 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~--~~~~~~~  219 (331)
                                       .++...|+.+|.+.+.+++.++.+.   ++++++++||.+..+....  .....  .......
T Consensus       141 -----------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~--~~~~~~~~~~~~~~  201 (244)
T 1zmo_A          141 -----------------LAYNPLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPTYFP--TSDWENNPELRERV  201 (244)
T ss_dssp             -----------------CTTCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCBTTTBC--HHHHHHCHHHHHHH
T ss_pred             -----------------CCCchHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCcccc--cccccchHHHHHHH
Confidence                             1123479999999999999888764   7999999999997764200  00000  0011111


Q ss_pred             CCCcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          220 GNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       220 ~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                      ......     ..+...+|+|+++++++....  ..| .+.++++
T Consensus       202 ~~~~p~-----~r~~~pe~vA~~v~~l~s~~~~~~tG~~i~vdgG  241 (244)
T 1zmo_A          202 DRDVPL-----GRLGRPDEMGALITFLASRRAAPIVGQFFAFTGG  241 (244)
T ss_dssp             HHHCTT-----CSCBCHHHHHHHHHHHHTTTTGGGTTCEEEESTT
T ss_pred             hcCCCC-----CCCcCHHHHHHHHHHHcCccccCccCCEEEeCCC
Confidence            000111     257899999999999998643  234 4556554

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=99.82  E-value=1.4e-19  Score=163.78  Aligned_cols=214  Identities=15%  Similarity=0.074  Sum_probs=149.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .++++|||||+|.||.++++.|+++|++|++++|+.     . .+.+..+.+.    .++.++.+|+.|.+++.++++  
T Consensus       212 ~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~-----~-~~~l~~~~~~----~~~~~~~~Dvtd~~~v~~~~~~~  281 (454)
T 3u0b_A          212 DGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDG-----A-AEDLKRVADK----VGGTALTLDVTADDAVDKITAHV  281 (454)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGG-----G-HHHHHHHHHH----HTCEEEECCTTSTTHHHHHHHHH
T ss_pred             CCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCc-----c-HHHHHHHHHH----cCCeEEEEecCCHHHHHHHHHHH
Confidence            357899999999999999999999999999999875     1 1222221111    245789999999998888764  


Q ss_pred             -----C-ccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCCCCCC
Q 020104           82 -----G-CTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 -----~-~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                           + +|+|||+|+.....      .+++ +..+++|+.++.++.+++...    + ..+||++||...+...     
T Consensus       282 ~~~~g~~id~lV~nAGv~~~~~~~~~~~~~~-~~~~~~nv~g~~~l~~~~~~~~~~~~-~g~iV~iSS~a~~~g~-----  354 (454)
T 3u0b_A          282 TEHHGGKVDILVNNAGITRDKLLANMDEKRW-DAVIAVNLLAPQRLTEGLVGNGTIGE-GGRVIGLSSMAGIAGN-----  354 (454)
T ss_dssp             HHHSTTCCSEEEECCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHTTSSCT-TCEEEEECCHHHHHCC-----
T ss_pred             HHHcCCCceEEEECCcccCCCccccCCHHHH-HHHHHHHHHHHHHHHHHHHHhhhhcC-CCEEEEEeChHhCCCC-----
Confidence                 3 99999999975422      1123 378999999999999998865    4 5799999997765311     


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                       +....|+.+|...+.+++.++.+.   +++++.+.||.+.++..... .....   ..... .
T Consensus       355 -----------------~g~~~YaasKaal~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~-~~~~~---~~~~~-~  412 (454)
T 3u0b_A          355 -----------------RGQTNYATTKAGMIGLAEALAPVLADKGITINAVAPGFIETKMTEAI-PLATR---EVGRR-L  412 (454)
T ss_dssp             -----------------TTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSBCC-----------C---HHHHH-S
T ss_pred             -----------------CCCHHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEcCcccChhhhhc-chhhH---HHHHh-h
Confidence                             224579999998888888877653   89999999999987642210 00000   00000 0


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC--C-CceEEEecc
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD--A-KGRYICSSH  261 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~-~~~~~~~~~  261 (331)
                      ..+     ..+...+|+++++++++....  . |..++++++
T Consensus       413 ~~l-----~r~g~pedvA~~v~fL~s~~a~~itG~~i~vdGG  449 (454)
T 3u0b_A          413 NSL-----FQGGQPVDVAELIAYFASPASNAVTGNTIRVCGQ  449 (454)
T ss_dssp             BTT-----SSCBCHHHHHHHHHHHHCGGGTTCCSCEEEESSS
T ss_pred             ccc-----cCCCCHHHHHHHHHHHhCCccCCCCCcEEEECCc
Confidence            111     256789999999999997543  2 445667654

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=99.82  E-value=2.9e-19  Score=163.92  Aligned_cols=226  Identities=18%  Similarity=0.155  Sum_probs=157.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCccccccc-cCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKDLSFL-KNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      .+++||||||+|+||.+++++|+++|+ .|++++|+..     .......+ .++.....++.++.+|+.|.+++.++++
T Consensus       258 ~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~-----~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~  332 (511)
T 2z5l_A          258 PSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGP-----EAPGAAELAEELRGHGCEVVHAACDVAERDALAALVT  332 (511)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGG-----GSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCc-----ccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHh
Confidence            357899999999999999999999998 5888999862     11111111 1111123568899999999999999987


Q ss_pred             C--ccEEEEecccCCCC---CCC--hhhHHHHHHHHHHHHHHHHHHhc-CCccEEEEecccceeecCCCCCCcccCCCCC
Q 020104           82 G--CTGVLHVATPVDFE---DKE--PEEVITQRAINGTLGILKSCLKS-GTVKRVVYTSSNAAVFYNDKDVDMMDETFWS  153 (331)
Q Consensus        82 ~--~d~Vih~a~~~~~~---~~~--~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~  153 (331)
                      +  +|+|||+||.....   ..+  ..+..+++|+.++.++.+++... + .++||++||...+. +.            
T Consensus       333 ~~~ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~-~~~~V~~SS~a~~~-g~------------  398 (511)
T 2z5l_A          333 AYPPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKG-LDAFVLFSSVTGTW-GN------------  398 (511)
T ss_dssp             HSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTT-CCCEEEEEEGGGTT-CC------------
T ss_pred             cCCCcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccC-CCEEEEEeCHHhcC-CC------------
Confidence            5  99999999975522   111  22367889999999999999876 5 78999999975442 11            


Q ss_pred             ChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccc
Q 020104          154 DVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSM  233 (331)
Q Consensus       154 ~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (331)
                               +....|+.+|...+.+.+.+. ..++++++++||.+.+.+...    ....  ..+..        ....+
T Consensus       399 ---------~g~~~YaaaKa~ld~la~~~~-~~gi~v~sv~pG~~~~tgm~~----~~~~--~~~~~--------~g~~~  454 (511)
T 2z5l_A          399 ---------AGQGAYAAANAALDALAERRR-AAGLPATSVAWGLWGGGGMAA----GAGE--ESLSR--------RGLRA  454 (511)
T ss_dssp             ---------TTBHHHHHHHHHHHHHHHHHH-TTTCCCEEEEECCBCSTTCCC----CHHH--HHHHH--------HTBCC
T ss_pred             ---------CCCHHHHHHHHHHHHHHHHHH-HcCCcEEEEECCcccCCcccc----cccH--HHHHh--------cCCCC
Confidence                     124579999999999988764 469999999999884333221    1111  11110        01257


Q ss_pred             eeHHHHHHHHHHhhcCCCCCceEEEeccccCHHHHHHHHHhhC
Q 020104          234 VHVDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKY  276 (331)
Q Consensus       234 i~v~D~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~  276 (331)
                      ++.+|+++++..++..+..  .+.+.  .+.|..+...+....
T Consensus       455 l~~e~~a~~l~~al~~~~~--~v~v~--~~d~~~~~~~~~~~~  493 (511)
T 2z5l_A          455 MDPDAAVDALLGAMGRNDV--CVTVV--DVDWERFAPATNAIR  493 (511)
T ss_dssp             BCHHHHHHHHHHHHHHTCS--EEEEC--CBCHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHhCCCC--EEEEE--eCCHHHHHhhhcccC
Confidence            8999999999999976532  22333  356777777665543

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=99.82  E-value=9.4e-19  Score=147.16  Aligned_cols=224  Identities=16%  Similarity=0.096  Sum_probs=153.4

Q ss_pred             CCCCCceEEEecCcc--hhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccc-cCCCCCCCcEEEEeCCCCCCccHH
Q 020104            1 MEEGKGRVCVTGGTG--FIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFL-KNLPGASERLRIFHADLSHPDGFD   77 (331)
Q Consensus         1 M~~~~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~~~~~~~   77 (331)
                      |...+|++|||||+|  .||.++++.|++.|++|++.+|+.     +..+..... .+..  ..++.++.+|+.|++++.
T Consensus         2 ~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~-----~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~   74 (256)
T 4fs3_A            2 LNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKE-----RSRKELEKLLEQLN--QPEAHLYQIDVQSDEEVI   74 (256)
T ss_dssp             CCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSG-----GGHHHHHHHHGGGT--CSSCEEEECCTTCHHHHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHHhcC--CCcEEEEEccCCCHHHHH
Confidence            445678999999887  899999999999999999999987     333333222 2221  246889999999998888


Q ss_pred             HHhc-------CccEEEEecccCCCC-------CCChh--hHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecC
Q 020104           78 AAIA-------GCTGVLHVATPVDFE-------DKEPE--EVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYN  140 (331)
Q Consensus        78 ~~~~-------~~d~Vih~a~~~~~~-------~~~~~--~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~  140 (331)
                      ++++       ++|++||+|+.....       .....  ...+++|+.++..+.+++...- .-.++|++||...... 
T Consensus        75 ~~~~~~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~~~-  153 (256)
T 4fs3_A           75 NGFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEFA-  153 (256)
T ss_dssp             HHHHHHHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGTSC-
T ss_pred             HHHHHHHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEeccccccC-
Confidence            7764       689999999854311       11111  2456788888888888776542 1358999999765421 


Q ss_pred             CCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHH
Q 020104          141 DKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLAL  217 (331)
Q Consensus       141 ~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~  217 (331)
                                           .+....|+.+|...+.+.+.++.+.   +++++.+.||.+..+......  ........
T Consensus       154 ---------------------~~~~~~Y~asKaal~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~--~~~~~~~~  210 (256)
T 4fs3_A          154 ---------------------VQNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVG--GFNTILKE  210 (256)
T ss_dssp             ---------------------CTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCT--THHHHHHH
T ss_pred             ---------------------cccchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCCCCChhhhhcc--CCHHHHHH
Confidence                                 1224579999999999999888764   799999999998776432211  11112221


Q ss_pred             HhCCCcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          218 ILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       218 ~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                      ... ..+++     .+...+|+|.++++++....  ..| .+.++|.
T Consensus       211 ~~~-~~Pl~-----R~g~peevA~~v~fL~Sd~a~~iTG~~i~VDGG  251 (256)
T 4fs3_A          211 IKE-RAPLK-----RNVDQVEVGKTAAYLLSDLSSGVTGENIHVDSG  251 (256)
T ss_dssp             HHH-HSTTS-----SCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             HHh-cCCCC-----CCcCHHHHHHHHHHHhCchhcCccCCEEEECcC
Confidence            111 12222     57789999999999997543  244 4556554

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=99.81  E-value=2.2e-20  Score=157.71  Aligned_cols=210  Identities=16%  Similarity=0.084  Sum_probs=143.2

Q ss_pred             CceEEEecCcchhHHHHHHHHHH---CCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLD---HGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~---~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      +|++|||||+|+||++++++|++   .|++|++++|+.     +..+.. ..+.+.. ...++.++.+|+.|++++.+++
T Consensus         6 ~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~-----~~~~~~~~~l~~~~-~~~~~~~~~~Dv~~~~~v~~~~   79 (259)
T 1oaa_A            6 CAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSE-----SMLRQLKEELGAQQ-PDLKVVLAAADLGTEAGVQRLL   79 (259)
T ss_dssp             SEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCH-----HHHHHHHHHHHHHC-TTSEEEEEECCTTSHHHHHHHH
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCH-----HHHHHHHHHHHhhC-CCCeEEEEecCCCCHHHHHHHH
Confidence            57899999999999999999999   899999999986     222211 1111100 0246889999999998887765


Q ss_pred             c---------Ccc--EEEEecccCCC---------CCCChhhHHHHHHHHHHHHHHHHHHhcC-----CccEEEEecccc
Q 020104           81 A---------GCT--GVLHVATPVDF---------EDKEPEEVITQRAINGTLGILKSCLKSG-----TVKRVVYTSSNA  135 (331)
Q Consensus        81 ~---------~~d--~Vih~a~~~~~---------~~~~~~~~~~~~n~~~~~~l~~~~~~~~-----~~~~~v~~SS~~  135 (331)
                      +         ++|  ++||+||....         ...++ +..+++|+.++.++++++...-     ...++|++||..
T Consensus        80 ~~~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~  158 (259)
T 1oaa_A           80 SAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEV-NNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLC  158 (259)
T ss_dssp             HHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHH-HHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGG
T ss_pred             HHHHhccccccCCccEEEECCcccCCCCcchhccCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCch
Confidence            3         358  99999996431         11223 3789999999999999886531     145899999987


Q ss_pred             eeecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc-CCcEEEeccCceeCCCCCCCCC-ccHHH
Q 020104          136 AVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH-GLDLVTLIPSMVVGPFICPKFA-GSVRS  213 (331)
Q Consensus       136 ~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~-~~~~~ilRp~~v~G~~~~~~~~-~~~~~  213 (331)
                      .+..                      .++...|+.+|.+.+.+.+.++.+. +++++.+.||.+-.+....... ..-..
T Consensus       159 ~~~~----------------------~~~~~~Y~asKaa~~~~~~~la~e~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~  216 (259)
T 1oaa_A          159 ALQP----------------------YKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDMQQLARETSKDPE  216 (259)
T ss_dssp             GTSC----------------------CTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHHHHHHHHHCSCHH
T ss_pred             hcCC----------------------CCCccHHHHHHHHHHHHHHHHHhhCCCceEEEecCCCcCcchHHHHhhccCChh
Confidence            6521                      1224579999999999999998876 4899999999885542100000 00000


Q ss_pred             HHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcC
Q 020104          214 SLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEY  249 (331)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~  249 (331)
                      ....... ....     ..+.+.+|+|+++++++..
T Consensus       217 ~~~~~~~-~~p~-----~~~~~p~dvA~~v~~l~~~  246 (259)
T 1oaa_A          217 LRSKLQK-LKSD-----GALVDCGTSAQKLLGLLQK  246 (259)
T ss_dssp             HHHHHHH-HHHT-----TCSBCHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-hhhc-----CCcCCHHHHHHHHHHHHhh
Confidence            0000000 0011     2578999999999999874

>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*

Probab=99.81  E-value=3.7e-18  Score=146.95  Aligned_cols=228  Identities=11%  Similarity=0.003  Sum_probs=143.3

Q ss_pred             CCCCceEEEecCc--chhHHHHHHHHHHCCCeEEEEecCCCC------cccCCccccccccCCCCCCCcEEEEeCC----
Q 020104            2 EEGKGRVCVTGGT--GFIASWLIMRLLDHGYSVTTTVRSELD------PEHRNSKDLSFLKNLPGASERLRIFHAD----   69 (331)
Q Consensus         2 ~~~~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~D----   69 (331)
                      ...+|++|||||+  |+||++++++|+++|++|++++|++..      ......+....+.. .........+.+|    
T Consensus         5 ~l~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   83 (297)
T 1d7o_A            5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPD-GSLMEIKKVYPLDAVFD   83 (297)
T ss_dssp             CCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTT-SSBCCEEEEEEECTTCC
T ss_pred             ccCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeeccccchhhhhhhhhhHhhhhhhhcc-ccccccccccccceecc
Confidence            3445789999999  999999999999999999999864200      00011111111110 0000112333333    


Q ss_pred             ----CC----C--------CccHHHHhc-------CccEEEEecccCC--------CCCCChhhHHHHHHHHHHHHHHHH
Q 020104           70 ----LS----H--------PDGFDAAIA-------GCTGVLHVATPVD--------FEDKEPEEVITQRAINGTLGILKS  118 (331)
Q Consensus        70 ----~~----~--------~~~~~~~~~-------~~d~Vih~a~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~  118 (331)
                          +.    |        .+++.++++       ++|++||+||...        ....++ +..+++|+.++.+++++
T Consensus        84 ~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~  162 (297)
T 1d7o_A           84 NPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGY-LAAISASSYSFVSLLSH  162 (297)
T ss_dssp             SGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHH-HHHHHHHTHHHHHHHHH
T ss_pred             chhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHH-HHHHHHhhhHHHHHHHH
Confidence                22    1        556666553       6899999998531        111223 37899999999999999


Q ss_pred             HHhcC-CccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCCCC-chhHhhHHHHHHHHHHHHHH----cCCcEEE
Q 020104          119 CLKSG-TVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWG-KSYAISKTLTERAALEFAEE----HGLDLVT  192 (331)
Q Consensus       119 ~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~-~~Y~~~K~~~e~~~~~~~~~----~~~~~~i  192 (331)
                      +...- .-.++|++||...+...                      +.. ..|+.+|.+.+.+.+.++.+    ++++++.
T Consensus       163 ~~~~m~~~g~iv~isS~~~~~~~----------------------~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~vn~  220 (297)
T 1d7o_A          163 FLPIMNPGGASISLTYIASERII----------------------PGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNT  220 (297)
T ss_dssp             HGGGEEEEEEEEEEECGGGTSCC----------------------TTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred             HHHHhccCceEEEEeccccccCC----------------------CCcchHHHHHHHHHHHHHHHHHHHhCcccCcEEEE
Confidence            98651 02599999997654210                      112 36999999999999988765    5899999


Q ss_pred             eccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC---CCceEEEecc
Q 020104          193 LIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD---AKGRYICSSH  261 (331)
Q Consensus       193 lRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~  261 (331)
                      ++||.+.++.....  ............. ..+     ..+...+|+|+++++++....   .+..+++++.
T Consensus       221 v~PG~v~T~~~~~~--~~~~~~~~~~~~~-~p~-----~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdgG  284 (297)
T 1d7o_A          221 ISAGPLGSRAAKAI--GFIDTMIEYSYNN-API-----QKTLTADEVGNAAAFLVSPLASAITGATIYVDNG  284 (297)
T ss_dssp             EEECCCBCCCSSCC--SHHHHHHHHHHHH-SSS-----CCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred             Eeccccccchhhhc--cccHHHHHHhhcc-CCC-----CCCCCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence            99999998864321  1111111111111 111     256799999999999987532   2445677654

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=99.80  E-value=4.2e-19  Score=153.96  Aligned_cols=211  Identities=14%  Similarity=0.118  Sum_probs=139.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcc-cCCccccccc-cCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPE-HRNSKDLSFL-KNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      .+|++|||||+|+||+++++.|+++|++|++++|...... ....+....+ .++..  ... .+.+|+.+.+++.++++
T Consensus         8 ~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~--~~~-~~~~D~~~~~~~~~~~~   84 (319)
T 1gz6_A            8 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRR--RGG-KAVANYDSVEAGEKLVK   84 (319)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHH--TTC-EEEEECCCGGGHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHh--hCC-eEEEeCCCHHHHHHHHH
Confidence            3578999999999999999999999999999866421000 0011111111 11100  011 13579999887766543


Q ss_pred             -------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCCC
Q 020104           82 -------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 -------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                             ++|+|||+||.....      ..++ +..+++|+.++.++++++    ++.+ ..++|++||..... +.   
T Consensus        85 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~~~m~~~~-~grIV~vsS~~~~~-~~---  158 (319)
T 1gz6_A           85 TALDTFGRIDVVVNNAGILRDRSFSRISDEDW-DIIQRVHLRGSFQVTRAAWDHMKKQN-YGRIIMTASASGIY-GN---  158 (319)
T ss_dssp             HHHHHTSCCCEEEECCCCCCCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHH-CC---
T ss_pred             HHHHHcCCCCEEEECCCCCCCCChhhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEECChhhcc-CC---
Confidence                   689999999965421      1123 378999999998888877    3445 57999999975442 11   


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                                        ++...|+.+|.+.+.+.+.++.+.   ++++++++||.+ .+......+             
T Consensus       159 ------------------~~~~~Y~aSK~a~~~~~~~la~el~~~gI~vn~v~PG~~-t~~~~~~~~-------------  206 (319)
T 1gz6_A          159 ------------------FGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAG-SRMTETVMP-------------  206 (319)
T ss_dssp             ------------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECC-STTTGGGSC-------------
T ss_pred             ------------------CCCHHHHHHHHHHHHHHHHHHHHhcccCEEEEEEeCCCc-cccccccCC-------------
Confidence                              124579999999999999988764   899999999976 321110000             


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCC--CCceEEEecc
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKGRYICSSH  261 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~~~~  261 (331)
                       ..     ...+++.+|+|.++++++..+.  .+..|++++.
T Consensus       207 -~~-----~~~~~~p~dvA~~~~~l~s~~~~~tG~~~~v~GG  242 (319)
T 1gz6_A          207 -ED-----LVEALKPEYVAPLVLWLCHESCEENGGLFEVGAG  242 (319)
T ss_dssp             -HH-----HHHHSCGGGTHHHHHHHTSTTCCCCSCEEEEETT
T ss_pred             -hh-----hhccCCHHHHHHHHHHHhCchhhcCCCEEEECCC
Confidence             00     0135688999999999987642  2445666654

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=99.75  E-value=4.4e-18  Score=154.94  Aligned_cols=205  Identities=20%  Similarity=0.174  Sum_probs=146.9

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCccccccc-cCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKDLSFL-KNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      ++++|||||+|.||.+++++|+++|+ .|+++.|+..     ..+....+ .++.....++.++.+|+.|.+++.++++ 
T Consensus       239 ~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~-----~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~  313 (496)
T 3mje_A          239 HGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGA-----DAPGAAELRAELEQLGVRVTIAACDAADREALAALLAE  313 (496)
T ss_dssp             CSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGG-----GSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHT
T ss_pred             CCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCC-----ChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence            47899999999999999999999998 7888888751     11111111 1111123578999999999999999885 


Q ss_pred             -----CccEEEEecccC-CCC---CCC--hhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCC
Q 020104           82 -----GCTGVLHVATPV-DFE---DKE--PEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDET  150 (331)
Q Consensus        82 -----~~d~Vih~a~~~-~~~---~~~--~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~  150 (331)
                           ++|+|||+||.. ...   ..+  ..+..+++|+.++.++.+++.... ..+||++||...+...          
T Consensus       314 i~~~g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~-~~~iV~~SS~a~~~g~----------  382 (496)
T 3mje_A          314 LPEDAPLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLD-LDAFVLFSSGAAVWGS----------  382 (496)
T ss_dssp             CCTTSCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSC-CSEEEEEEEHHHHTTC----------
T ss_pred             HHHhCCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccC-CCEEEEEeChHhcCCC----------
Confidence                 489999999976 311   111  124788999999999999999887 7899999997765311          


Q ss_pred             CCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCC
Q 020104          151 FWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLN  230 (331)
Q Consensus       151 ~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (331)
                                  +....|+.+|...+.+.+.+. ..+++++.+.||.+.+.+..... ...    ..+....        
T Consensus       383 ------------~g~~~YaAaKa~ldala~~~~-~~Gi~v~sV~pG~w~~~gm~~~~-~~~----~~l~~~g--------  436 (496)
T 3mje_A          383 ------------GGQPGYAAANAYLDALAEHRR-SLGLTASSVAWGTWGEVGMATDP-EVH----DRLVRQG--------  436 (496)
T ss_dssp             ------------TTCHHHHHHHHHHHHHHHHHH-HTTCCCEEEEECEESSSCC-------C----HHHHHTT--------
T ss_pred             ------------CCcHHHHHHHHHHHHHHHHHH-hcCCeEEEEECCcccCCccccCh-HHH----HHHHhcC--------
Confidence                        124579999999999888765 46999999999998876543211 000    0111110        


Q ss_pred             ccceeHHHHHHHHHHhhcCCC
Q 020104          231 TSMVHVDDVARAHIFLLEYPD  251 (331)
Q Consensus       231 ~~~i~v~D~a~~~~~~~~~~~  251 (331)
                      ...+..++.++++..++..+.
T Consensus       437 ~~~l~pe~~~~~l~~~l~~~~  457 (496)
T 3mje_A          437 VLAMEPEHALGALDQMLENDD  457 (496)
T ss_dssp             EEEECHHHHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHcCCC
Confidence            245788999999999987654

>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella}

Probab=99.73  E-value=6.5e-17  Score=140.56  Aligned_cols=230  Identities=13%  Similarity=0.002  Sum_probs=122.4

Q ss_pred             CCceEEEecC--cchhHHHHHHHHHHCCCeEEEEecCCC------CcccCCccccc---------cccCCCCCC---CcE
Q 020104            4 GKGRVCVTGG--TGFIASWLIMRLLDHGYSVTTTVRSEL------DPEHRNSKDLS---------FLKNLPGAS---ERL   63 (331)
Q Consensus         4 ~~~~ilVtGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~------~~~~~~~~~~~---------~~~~~~~~~---~~~   63 (331)
                      .+|++|||||  +|+||+++++.|+++|++|++++|++.      ....+......         ...++....   ...
T Consensus         8 ~~k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (319)
T 2ptg_A            8 RGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVDLVFD   87 (319)
T ss_dssp             TTCEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECHHHHHHHHC--------------------------------CCS
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhcccccccc
Confidence            3478999999  899999999999999999999986410      00000000000         000110000   012


Q ss_pred             EEEeCCC------------CC--------CccHHHHhc-------CccEEEEecccCC--------CCCCChhhHHHHHH
Q 020104           64 RIFHADL------------SH--------PDGFDAAIA-------GCTGVLHVATPVD--------FEDKEPEEVITQRA  108 (331)
Q Consensus        64 ~~~~~D~------------~~--------~~~~~~~~~-------~~d~Vih~a~~~~--------~~~~~~~~~~~~~n  108 (331)
                      .++.+|+            .|        .+++.++++       ++|++||+||...        ....++ +..+++|
T Consensus        88 ~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~-~~~~~vN  166 (319)
T 2ptg_A           88 KIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGY-LAAVSSS  166 (319)
T ss_dssp             EEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHH-HHHHHHH
T ss_pred             ccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHH-HHHHhHh
Confidence            4444442            22        345665553       6899999998531        111123 3788999


Q ss_pred             HHHHHHHHHHHHhcC-CccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCCCC-chhHhhHHHHHHHHHHHHHH-
Q 020104          109 INGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWG-KSYAISKTLTERAALEFAEE-  185 (331)
Q Consensus       109 ~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~-~~Y~~~K~~~e~~~~~~~~~-  185 (331)
                      +.++.++++++...- .-.++|++||...+...                      +.. ..|+.+|.+.+.+++.++.+ 
T Consensus       167 ~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~----------------------~~~~~~Y~asKaal~~l~~~la~el  224 (319)
T 2ptg_A          167 SYSFVSLLQHFLPLMKEGGSALALSYIASEKVI----------------------PGYGGGMSSAKAALESDCRTLAFEA  224 (319)
T ss_dssp             THHHHHHHHHHGGGEEEEEEEEEEEECC----------------------------------------THHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCceEEEEecccccccc----------------------CccchhhHHHHHHHHHHHHHHHHHh
Confidence            999999999988651 02599999997654210                      112 36999999999988887765 


Q ss_pred             ---cCCcEEEeccCceeCCCCCCCCCccHHHHHHHH---hCCCcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eE
Q 020104          186 ---HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALI---LGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RY  256 (331)
Q Consensus       186 ---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~  256 (331)
                         ++++++.++||.+..+.................   ......+     ..+...+|+|+++++++....  ..| .+
T Consensus       225 ~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~-----~r~~~peevA~~v~~L~s~~~~~itG~~i  299 (319)
T 2ptg_A          225 GRARAVRVNCISAGPLKSRAASAIGKAGDKTFIDLAIDYSEANAPL-----QKELESDDVGRAALFLLSPLARAVTGATL  299 (319)
T ss_dssp             HHHHCCEEEEEEECCCC------------------------------------CCCHHHHHHHHHHHTSGGGTTCCSCEE
T ss_pred             ccccCeeEEEEeeCCccChhhhhcccccchhhHHHHHHHHhccCCC-----CCCCCHHHHHHHHHHHhCcccCCccCCEE
Confidence               589999999999987632210000000000000   0000111     256789999999999997532  344 45


Q ss_pred             EEecc
Q 020104          257 ICSSH  261 (331)
Q Consensus       257 ~~~~~  261 (331)
                      .+.+.
T Consensus       300 ~vdGG  304 (319)
T 2ptg_A          300 YVDNG  304 (319)
T ss_dssp             EESTT
T ss_pred             EECCC
Confidence            56554

>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A*

Probab=99.73  E-value=7.2e-17  Score=140.01  Aligned_cols=228  Identities=13%  Similarity=0.015  Sum_probs=138.7

Q ss_pred             CCceEEEecC--cchhHHHHHHHHHHCCCeEEEEecCCC------CcccCCccccccccCCCCCCCcEEEEeCCC-----
Q 020104            4 GKGRVCVTGG--TGFIASWLIMRLLDHGYSVTTTVRSEL------DPEHRNSKDLSFLKNLPGASERLRIFHADL-----   70 (331)
Q Consensus         4 ~~~~ilVtGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~-----   70 (331)
                      .+|++|||||  +|+||+++++.|++.|++|++++|++.      .......+....+.. ......+.++.+|+     
T Consensus         8 ~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~   86 (315)
T 2o2s_A            8 RGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDEDRKLPD-GSLIEFAGVYPLDAAFDKP   86 (315)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHHHHHHHHHHHHHTTTHHHHBCTT-SCBCCCSCEEECCTTCSST
T ss_pred             CCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEecccccchhhhhhhhhhhhhhhhhhc-ccccccccccccccccccc
Confidence            3578999999  899999999999999999999987420      000001111111110 00000123344432     


Q ss_pred             -------C--------CCccHHHHhc-------CccEEEEecccCC--------CCCCChhhHHHHHHHHHHHHHHHHHH
Q 020104           71 -------S--------HPDGFDAAIA-------GCTGVLHVATPVD--------FEDKEPEEVITQRAINGTLGILKSCL  120 (331)
Q Consensus        71 -------~--------~~~~~~~~~~-------~~d~Vih~a~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~  120 (331)
                             .        |.+++.++++       ++|++||+||...        ....++ +..+++|+.++.++++++.
T Consensus        87 ~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~  165 (315)
T 2o2s_A           87 EDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGY-LAASSNSAYSFVSLLQHFG  165 (315)
T ss_dssp             TSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHH-HHHHHHHTHHHHHHHHHHS
T ss_pred             chhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHH-HHHHhhhhHHHHHHHHHHH
Confidence                   2        2556666553       6899999998542        111123 3788999999999999987


Q ss_pred             hcC-CccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCCCC-chhHhhHHHHHHHHHHHHHH----cCCcEEEec
Q 020104          121 KSG-TVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWG-KSYAISKTLTERAALEFAEE----HGLDLVTLI  194 (331)
Q Consensus       121 ~~~-~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~-~~Y~~~K~~~e~~~~~~~~~----~~~~~~ilR  194 (331)
                      ..- .-.++|++||...+...                      +.. ..|+.+|.+.+.+.+.++.+    ++++++.++
T Consensus       166 ~~m~~~g~Iv~isS~~~~~~~----------------------~~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~v~  223 (315)
T 2o2s_A          166 PIMNEGGSAVTLSYLAAERVV----------------------PGYGGGMSSAKAALESDTRTLAWEAGQKYGVRVNAIS  223 (315)
T ss_dssp             TTEEEEEEEEEEEEGGGTSCC----------------------TTCCTTHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             HHHhcCCEEEEEecccccccC----------------------CCccHHHHHHHHHHHHHHHHHHHHhCcccCeEEEEEe
Confidence            641 02599999997654210                      111 36999999999999887765    589999999


Q ss_pred             cCceeCCCCCC----CCCccHHHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          195 PSMVVGPFICP----KFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       195 p~~v~G~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                      ||.+..+....    ............... ...+     ..+...+|+|+++++++....  ..| .+.+.+.
T Consensus       224 PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~-~~p~-----~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG  291 (315)
T 2o2s_A          224 AGPLKSRAASAIGKSGEKSFIDYAIDYSYN-NAPL-----RRDLHSDDVGGAALFLLSPLARAVSGVTLYVDNG  291 (315)
T ss_dssp             ECCCCCHHHHHTTCSSSSCHHHHHHHHHHH-HSSS-----CCCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred             cccccchhhhhccccccchhHHHHHHHHhc-cCCC-----CCCCCHHHHHHHHHHHhCchhccCcCCEEEECCC
Confidence            99987652110    000011111111110 0111     156789999999999997532  344 4556554

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=99.70  E-value=6.7e-17  Score=151.91  Aligned_cols=208  Identities=13%  Similarity=0.071  Sum_probs=133.4

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcc----cCCccc-cccccCCCCCCCcEEEEeCCCCCCccHH
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPE----HRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFD   77 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~   77 (331)
                      ..+|++|||||+|.||+++++.|+++|++|++++|......    ....+. ...+...   ...   +.+|+.|.+++.
T Consensus        17 l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~---~~~---~~~D~~d~~~~~   90 (613)
T 3oml_A           17 YDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKA---GGE---AVADYNSVIDGA   90 (613)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHT---TCC---EEECCCCGGGHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHh---CCe---EEEEeCCHHHHH
Confidence            34678999999999999999999999999999988321000    011111 1111111   111   347999998888


Q ss_pred             HHhc-------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecC
Q 020104           78 AAIA-------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYN  140 (331)
Q Consensus        78 ~~~~-------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~  140 (331)
                      ++++       ++|++||+||.....      ..++ +..+++|+.++.++++++    ++.+ ..++|++||...+...
T Consensus        91 ~~~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~-~~~~~vNl~g~~~l~~~~~p~m~~~~-~g~IV~isS~a~~~~~  168 (613)
T 3oml_A           91 KVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDW-NLVNDVHLKGSFKCTQAAFPYMKKQN-YGRIIMTSSNSGIYGN  168 (613)
T ss_dssp             HHHC----------CEECCCCCCCCCCSTTCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTT-CEEEEEECCHHHHHCC
T ss_pred             HHHHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEECCHHHcCCC
Confidence            7775       589999999965421      1223 378899999999999987    4444 5799999997655311


Q ss_pred             CCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHH
Q 020104          141 DKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLAL  217 (331)
Q Consensus       141 ~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~  217 (331)
                                            +....|+.+|.+.+.+.+.++.+.   +++++.+.|+.+- +.......         
T Consensus       169 ----------------------~~~~~Y~asKaal~~lt~~la~e~~~~gI~vn~v~Pg~~t-~~~~~~~~---------  216 (613)
T 3oml_A          169 ----------------------FGQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPTAAS-RMTEGILP---------  216 (613)
T ss_dssp             ----------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-------CCCCC---------
T ss_pred             ----------------------CCChHHHHHHHHHHHHHHHHHHHhCccCeEEEEEECCCCC-hhhhhccc---------
Confidence                                  224579999999999999988765   7999999998542 11100000         


Q ss_pred             HhCCCcccccCCCccceeHHHHHHHHHHhhcCCC--CCceEEEec
Q 020104          218 ILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKGRYICSS  260 (331)
Q Consensus       218 ~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~~~  260 (331)
                           ...     ...+..+|+|.++++++....  .|..+++++
T Consensus       217 -----~~~-----~~~~~pedvA~~v~~L~s~~~~~tG~~i~vdG  251 (613)
T 3oml_A          217 -----DIL-----FNELKPKLIAPVVAYLCHESCEDNGSYIESAA  251 (613)
T ss_dssp             -----HHH-----HTTCCGGGTHHHHHHTTSTTCCCCSCEEEEET
T ss_pred             -----hhh-----hhcCCHHHHHHHHHHhcCCCcCCCceEEEECC
Confidence                 000     144578899999999987652  233444543

>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ...

Probab=99.69  E-value=2.8e-16  Score=137.04  Aligned_cols=174  Identities=9%  Similarity=-0.027  Sum_probs=119.2

Q ss_pred             CceEEEecCcc--hhHHHHHHHHHHCCCeEEEEecCCCC----cccCCccccccccCC-CCCCCcEEEEeCCCCCC--c-
Q 020104            5 KGRVCVTGGTG--FIASWLIMRLLDHGYSVTTTVRSELD----PEHRNSKDLSFLKNL-PGASERLRIFHADLSHP--D-   74 (331)
Q Consensus         5 ~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~~~--~-   74 (331)
                      +|++|||||++  .||.+++++|+++|++|++..|++..    ...+........... ......+.++.+|+.+.  + 
T Consensus         2 ~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~   81 (329)
T 3lt0_A            2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAND   81 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSGGG
T ss_pred             CcEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccchhh
Confidence            57899999875  99999999999999999977654300    000111111111111 11224578888999887  6 


Q ss_pred             -----------------cHHHHhc-------CccEEEEecccCC-----C---CCCChhhHHHHHHHHHHHHHHHHHHhc
Q 020104           75 -----------------GFDAAIA-------GCTGVLHVATPVD-----F---EDKEPEEVITQRAINGTLGILKSCLKS  122 (331)
Q Consensus        75 -----------------~~~~~~~-------~~d~Vih~a~~~~-----~---~~~~~~~~~~~~n~~~~~~l~~~~~~~  122 (331)
                                       ++.++++       ++|++||+||...     .   ...++ +..+++|+.++..+.+++...
T Consensus        82 ~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~-~~~~~vN~~g~~~l~~~~~p~  160 (329)
T 3lt0_A           82 IDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGY-LDALSKSSYSLISLCKYFVNI  160 (329)
T ss_dssp             CCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHH-HHHHHHHTHHHHHHHHHHGGG
T ss_pred             hhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHH-HHHHHHHhHHHHHHHHHHHHH
Confidence                             6766653       5899999998531     1   11123 378999999999999988764


Q ss_pred             C-CccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCCCCc-hhHhhHHHHHHHHHHHHHH----cCCcEEEeccC
Q 020104          123 G-TVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGK-SYAISKTLTERAALEFAEE----HGLDLVTLIPS  196 (331)
Q Consensus       123 ~-~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~-~Y~~~K~~~e~~~~~~~~~----~~~~~~ilRp~  196 (331)
                      - .-.++|++||...+...                      +... .|+.+|.+.+.+.+.++.+    ++++++.+.||
T Consensus       161 m~~~g~Iv~isS~~~~~~~----------------------~~~~~~Y~asKaal~~~~~~la~el~~~~gI~vn~v~PG  218 (329)
T 3lt0_A          161 MKPQSSIISLTYHASQKVV----------------------PGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAG  218 (329)
T ss_dssp             EEEEEEEEEEECGGGTSCC----------------------TTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred             HhhCCeEEEEeCccccCCC----------------------CcchHHHHHHHHHHHHHHHHHHHHhCCccCeEEEEEecc
Confidence            2 01489999997654210                      1122 6999999999888877654    48999999999


Q ss_pred             ceeCC
Q 020104          197 MVVGP  201 (331)
Q Consensus       197 ~v~G~  201 (331)
                      .+..+
T Consensus       219 ~v~T~  223 (329)
T 3lt0_A          219 PLKSR  223 (329)
T ss_dssp             CCCCH
T ss_pred             eeech
Confidence            98765

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=99.69  E-value=1.1e-16  Score=147.38  Aligned_cols=229  Identities=16%  Similarity=0.105  Sum_probs=151.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCe-EEEE-ecCCCCc---------ccCCccccccccCCCCCCCcEEEEeCCCCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYS-VTTT-VRSELDP---------EHRNSKDLSFLKNLPGASERLRIFHADLSH   72 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~-~r~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~   72 (331)
                      .++++|||||+|.||.+++++|+++|++ |+++ +|+....         .....+....+..   ...++.++.+|+.|
T Consensus       250 ~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~---~g~~v~~~~~Dvtd  326 (525)
T 3qp9_A          250 ADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELAD---LGATATVVTCDLTD  326 (525)
T ss_dssp             TTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHH---HTCEEEEEECCTTS
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHh---cCCEEEEEECCCCC
Confidence            3578999999999999999999999987 5566 7875210         0001111121211   12578999999999


Q ss_pred             CccHHHHhcC------ccEEEEecccCCCC---CCC--hhhHHHHHHHHHHHHHHHHHHhcCC----ccEEEEeccccee
Q 020104           73 PDGFDAAIAG------CTGVLHVATPVDFE---DKE--PEEVITQRAINGTLGILKSCLKSGT----VKRVVYTSSNAAV  137 (331)
Q Consensus        73 ~~~~~~~~~~------~d~Vih~a~~~~~~---~~~--~~~~~~~~n~~~~~~l~~~~~~~~~----~~~~v~~SS~~~~  137 (331)
                      .+++.++++.      +|+|||+||.....   ..+  ..+..+++|+.++.++.+++.....    ..+||++||...+
T Consensus       327 ~~~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS~a~~  406 (525)
T 3qp9_A          327 AEAAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSVAAI  406 (525)
T ss_dssp             HHHHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEEGGGT
T ss_pred             HHHHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECCHHHc
Confidence            9999998863      79999999975421   111  1247889999999999999987531    4689999997765


Q ss_pred             ecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHH
Q 020104          138 FYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLAL  217 (331)
Q Consensus       138 ~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~  217 (331)
                      ...                      +....|+.+|...+.+...+. ..+++++.+.||.+ +.+...  .....   ..
T Consensus       407 ~g~----------------------~g~~~YaaaKa~l~~lA~~~~-~~gi~v~sI~pG~~-~tgm~~--~~~~~---~~  457 (525)
T 3qp9_A          407 WGG----------------------AGQGAYAAGTAFLDALAGQHR-ADGPTVTSVAWSPW-EGSRVT--EGATG---ER  457 (525)
T ss_dssp             TCC----------------------TTCHHHHHHHHHHHHHHTSCC-SSCCEEEEEEECCB-TTSGGG--SSHHH---HH
T ss_pred             CCC----------------------CCCHHHHHHHHHHHHHHHHHH-hCCCCEEEEECCcc-cccccc--chhhH---HH
Confidence            311                      124579999999998876553 35899999999988 322110  01111   11


Q ss_pred             HhCCCcccccCCCccceeHHHHHHHHHHhhcCCCCCceEEEeccccCHHHHHHHHHhhC
Q 020104          218 ILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKY  276 (331)
Q Consensus       218 ~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~  276 (331)
                      +....        ...+..+++++++..++..+..  ...+  ..+.|..+...+....
T Consensus       458 ~~~~g--------~~~l~pee~a~~l~~~l~~~~~--~v~v--~~~dw~~~~~~~~~~~  504 (525)
T 3qp9_A          458 LRRLG--------LRPLAPATALTALDTALGHGDT--AVTI--ADVDWSSFAPGFTTAR  504 (525)
T ss_dssp             HHHTT--------BCCBCHHHHHHHHHHHHHHTCS--EEEE--CCBCHHHHHHHHHSSS
T ss_pred             HHhcC--------CCCCCHHHHHHHHHHHHhCCCC--eEEE--EeCCHHHHHhhccccC
Confidence            11110        2557899999999999986532  1122  2356777776665543

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}

Probab=99.61  E-value=1.1e-15  Score=150.31  Aligned_cols=207  Identities=16%  Similarity=0.092  Sum_probs=136.2

Q ss_pred             CCCceEEEecCcch-hHHHHHHHHHHCCCeEEEEe-cCCCCcccCCcc-cccccc-CCCCCCCcEEEEeCCCCCCccHHH
Q 020104            3 EGKGRVCVTGGTGF-IASWLIMRLLDHGYSVTTTV-RSELDPEHRNSK-DLSFLK-NLPGASERLRIFHADLSHPDGFDA   78 (331)
Q Consensus         3 ~~~~~ilVtGatG~-iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~D~~~~~~~~~   78 (331)
                      ..+|++|||||+|. ||.++++.|++.|++|+++. |+.     .... ....+. +......++.++.+|+.|.+++.+
T Consensus       474 L~GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~-----e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVea  548 (1688)
T 2pff_A          474 FKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFS-----KQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEA  548 (1688)
T ss_dssp             CCSCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCS-----TTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHH
T ss_pred             cCCCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCH-----HHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHH
Confidence            34578999999998 99999999999999999984 554     2211 112221 111123468899999999998888


Q ss_pred             Hhc-------------CccEEEEecccCCCC----CCC----hhhHHHHHHHHHHHHHHHHHHhcC-----CccEEEEec
Q 020104           79 AIA-------------GCTGVLHVATPVDFE----DKE----PEEVITQRAINGTLGILKSCLKSG-----TVKRVVYTS  132 (331)
Q Consensus        79 ~~~-------------~~d~Vih~a~~~~~~----~~~----~~~~~~~~n~~~~~~l~~~~~~~~-----~~~~~v~~S  132 (331)
                      +++             ++|+|||+||.....    ..+    ..+..+++|+.++..++++++...     .-.+||++|
T Consensus       549 LVe~I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnIS  628 (1688)
T 2pff_A          549 LIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMS  628 (1688)
T ss_dssp             HHHHHHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCCC
T ss_pred             HHHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEEE
Confidence            763             489999999965322    111    124788999999999999874321     025899999


Q ss_pred             ccceeecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHH-HHHHHHHcC--CcEEEeccCceeCCCCCCCCCc
Q 020104          133 SNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERA-ALEFAEEHG--LDLVTLIPSMVVGPFICPKFAG  209 (331)
Q Consensus       133 S~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~-~~~~~~~~~--~~~~ilRp~~v~G~~~~~~~~~  209 (331)
                      |......                        ....|+.+|.+.+.+ .+.++++.+  ++++.+.||.+.|....... .
T Consensus       629 SiAG~~G------------------------g~saYaASKAAL~aLttrsLAeEla~~IRVNaVaPG~V~TT~M~~~~-e  683 (1688)
T 2pff_A          629 PNHGTFG------------------------GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSAN-N  683 (1688)
T ss_dssp             SCTTTSS------------------------CBTTHHHHHHHHTHHHHHTTTSSCTTTEECCCCCCCCCCCCSSSCTT-T
T ss_pred             ChHhccC------------------------CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEECcCcCCcccCCc-h
Confidence            9654321                        123699999999998 444443332  88889999998753221100 0


Q ss_pred             cHHHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          210 SVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      ..          ...... ....+...+|+|+++++++...
T Consensus       684 ~~----------~~~l~~-iplR~~sPEEVA~aIlFLaSd~  713 (1688)
T 2pff_A          684 II----------AEGIEK-MGVRTFSQKEMAFNLLGLLTPE  713 (1688)
T ss_dssp             TC----------STTTSS-SSCCCCCCCTTHHHHHHHTSTT
T ss_pred             HH----------HHHHHh-CCCCCCCHHHHHHHHHHHhCCC
Confidence            00          000000 0013447899999999999765

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A*

Probab=99.58  E-value=7.6e-15  Score=148.77  Aligned_cols=207  Identities=16%  Similarity=0.096  Sum_probs=138.9

Q ss_pred             CCCceEEEecCcch-hHHHHHHHHHHCCCeEEEEe-cCCCCcccCCccc-cccc-cCCCCCCCcEEEEeCCCCCCccHHH
Q 020104            3 EGKGRVCVTGGTGF-IASWLIMRLLDHGYSVTTTV-RSELDPEHRNSKD-LSFL-KNLPGASERLRIFHADLSHPDGFDA   78 (331)
Q Consensus         3 ~~~~~ilVtGatG~-iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~D~~~~~~~~~   78 (331)
                      ..+|++|||||+|. ||.++++.|++.|++|++++ |+.     ..... ...+ .+......++.++.+|+.|.+++.+
T Consensus       673 l~gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~-----~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~a  747 (1887)
T 2uv8_A          673 FKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFS-----KQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEA  747 (1887)
T ss_dssp             CTTCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCC-----HHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCH-----HHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHH
Confidence            34578999999999 99999999999999999984 554     21111 1111 1111112468899999999998887


Q ss_pred             Hhc-------------CccEEEEecccCCCC----CCC----hhhHHHHHHHHHHHHHHHHHHhcCC-----ccEEEEec
Q 020104           79 AIA-------------GCTGVLHVATPVDFE----DKE----PEEVITQRAINGTLGILKSCLKSGT-----VKRVVYTS  132 (331)
Q Consensus        79 ~~~-------------~~d~Vih~a~~~~~~----~~~----~~~~~~~~n~~~~~~l~~~~~~~~~-----~~~~v~~S  132 (331)
                      +++             ++|++||+||.....    ..+    ..+..+++|+.++..++++++....     -.+||++|
T Consensus       748 lv~~i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnIS  827 (1887)
T 2uv8_A          748 LIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMS  827 (1887)
T ss_dssp             HHHHHHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEEC
T ss_pred             HHHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEEc
Confidence            763             489999999965432    111    1247889999999999998843321     25999999


Q ss_pred             ccceeecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHH-HHHHHHHcC--CcEEEeccCceeCCCCCCCCCc
Q 020104          133 SNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERA-ALEFAEEHG--LDLVTLIPSMVVGPFICPKFAG  209 (331)
Q Consensus       133 S~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~-~~~~~~~~~--~~~~ilRp~~v~G~~~~~~~~~  209 (331)
                      |......                        ....|+.+|...+.+ .+.++.+.+  ++++.+.||.+.|...... ..
T Consensus       828 S~ag~~g------------------------g~~aYaASKAAL~~Lttr~lA~ela~~IrVNaV~PG~V~tT~m~~~-~~  882 (1887)
T 2uv8_A          828 PNHGTFG------------------------GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSA-NN  882 (1887)
T ss_dssp             SCTTCSS------------------------CBTTHHHHHHHGGGHHHHHHHSSCTTTEEEEEEEECCEECC------CC
T ss_pred             ChHhccC------------------------CCchHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEeccccccccccc-ch
Confidence            9764421                        123699999999998 566555443  8999999999985321110 01


Q ss_pred             cHHHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          210 SVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      ....   .....+        ..+...+|+|+++++++...
T Consensus       883 ~~~~---~~~~~p--------lr~~sPEEVA~avlfLaSd~  912 (1887)
T 2uv8_A          883 IIAE---GIEKMG--------VRTFSQKEMAFNLLGLLTPE  912 (1887)
T ss_dssp             TTHH---HHHTTS--------CCCEEHHHHHHHHHGGGSHH
T ss_pred             hHHH---HHHhcC--------CCCCCHHHHHHHHHHHhCCC
Confidence            1111   111111        13458999999999999765

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A*

Probab=99.55  E-value=2.4e-14  Score=144.86  Aligned_cols=208  Identities=14%  Similarity=0.045  Sum_probs=137.4

Q ss_pred             CCCCceEEEecCcch-hHHHHHHHHHHCCCeEEEEecCCCCcccCCcc-ccccc-cCCCCCCCcEEEEeCCCCCCccHHH
Q 020104            2 EEGKGRVCVTGGTGF-IASWLIMRLLDHGYSVTTTVRSELDPEHRNSK-DLSFL-KNLPGASERLRIFHADLSHPDGFDA   78 (331)
Q Consensus         2 ~~~~~~ilVtGatG~-iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~D~~~~~~~~~   78 (331)
                      ...++++|||||+|. ||.++++.|++.|++|+++++...    .... ....+ .++.....++.++.+|+.|.+++.+
T Consensus       649 ~L~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~----~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~a  724 (1878)
T 2uv9_A          649 TFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFS----RQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEA  724 (1878)
T ss_dssp             CCTTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCC----HHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHH
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCh----HHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHH
Confidence            344578999999999 999999999999999999864431    1111 11111 1111122468899999999998887


Q ss_pred             Hhc-----------CccEEEEecccCCCC----CCC----hhhHHHHHHHHHHHHHHHHHHhcC-----CccEEEEeccc
Q 020104           79 AIA-----------GCTGVLHVATPVDFE----DKE----PEEVITQRAINGTLGILKSCLKSG-----TVKRVVYTSSN  134 (331)
Q Consensus        79 ~~~-----------~~d~Vih~a~~~~~~----~~~----~~~~~~~~n~~~~~~l~~~~~~~~-----~~~~~v~~SS~  134 (331)
                      +++           .+|+|||+||.....    ..+    ..+..+++|+.++.+++++++...     ...+||++||.
T Consensus       725 lv~~i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnISS~  804 (1878)
T 2uv9_A          725 LVNYIYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPLSPN  804 (1878)
T ss_dssp             HHHHHHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEECSC
T ss_pred             HHHHHHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEEcch
Confidence            763           489999999965422    111    124788999999998887743221     03589999997


Q ss_pred             ceeecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH-c--CCcEEEeccCcee-CCCCCCCCCcc
Q 020104          135 AAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE-H--GLDLVTLIPSMVV-GPFICPKFAGS  210 (331)
Q Consensus       135 ~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~-~--~~~~~ilRp~~v~-G~~~~~~~~~~  210 (331)
                      .....                        ....|+.+|...+.+++.+..+ .  .++++.+.||.+- .+...     .
T Consensus       805 ag~~g------------------------g~~aYaASKAAL~aLt~~laAeEla~~IrVNaVaPG~V~gT~m~~-----~  855 (1878)
T 2uv9_A          805 HGTFG------------------------NDGLYSESKLALETLFNRWYSESWGNYLTICGAVIGWTRGTGLMS-----A  855 (1878)
T ss_dssp             SSSSS------------------------CCSSHHHHHHHHTTHHHHHHHSTTTTTEEEEEEEECCBCCTTSCS-----H
T ss_pred             hhccC------------------------CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEecceecCcccc-----c
Confidence            64421                        0236999999999987765443 2  3899999999887 33211     1


Q ss_pred             HHHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          211 VRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      ...........+        ..+...+|+|+++++++...
T Consensus       856 ~~~~~~~~~~~p--------lr~~sPeEVA~avlfLaSd~  887 (1878)
T 2uv9_A          856 NNLVAEGVEKLG--------VRTFSQQEMAFNLLGLMAPA  887 (1878)
T ss_dssp             HHHTHHHHHTTT--------CCCBCHHHHHHHHHHHHSHH
T ss_pred             chhhHHHHHhcC--------CCCCCHHHHHHHHHHHhCCc
Confidence            011011111111        13458999999999998754

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=99.54  E-value=7.3e-14  Score=121.96  Aligned_cols=214  Identities=13%  Similarity=0.045  Sum_probs=133.9

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHH-CCCeEEEEecCCCCcccCC-------ccccc-cccCCCCCCCcEEEEeCCCCCC
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLD-HGYSVTTTVRSELDPEHRN-------SKDLS-FLKNLPGASERLRIFHADLSHP   73 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~D~~~~   73 (331)
                      ..+|++|||||++.||.++++.|++ .|.+|++++|+........       ..... .+.+   ....+..+.+|+.|.
T Consensus        45 ~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~---~G~~a~~i~~Dvtd~  121 (405)
T 3zu3_A           45 NGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQ---KGLYAKSINGDAFSD  121 (405)
T ss_dssp             TCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHH---TTCCEEEEESCTTSH
T ss_pred             CCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHh---cCCceEEEECCCCCH
Confidence            3568899999999999999999999 9999999998763110000       00011 1111   124678899999999


Q ss_pred             ccHHHHhc-------CccEEEEecccC-------------C---C------------------------CCCChhhHHHH
Q 020104           74 DGFDAAIA-------GCTGVLHVATPV-------------D---F------------------------EDKEPEEVITQ  106 (331)
Q Consensus        74 ~~~~~~~~-------~~d~Vih~a~~~-------------~---~------------------------~~~~~~~~~~~  106 (331)
                      +++.++++       ++|++||+||..             .   .                        ..+++ +..++
T Consensus       122 ~~v~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~-~~~v~  200 (405)
T 3zu3_A          122 EIKQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEI-DSTVA  200 (405)
T ss_dssp             HHHHHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHH-HHHHH
Confidence            88877764       589999999863             0   0                        11122 25666


Q ss_pred             HHHHHHH-HHHHHHHhcC---CccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHH
Q 020104          107 RAINGTL-GILKSCLKSG---TVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEF  182 (331)
Q Consensus       107 ~n~~~~~-~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~  182 (331)
                      +|..+.. .+++++....   .-.++|++||.......+                    ......|+.+|...+.+.+.+
T Consensus       201 Vn~~~~~~~~~~~~~~~~m~~~gG~IVniSSi~~~~~~p--------------------~~~~~aY~AaKaal~~ltrsL  260 (405)
T 3zu3_A          201 VMGGEDWQMWIDALLDAGVLAEGAQTTAFTYLGEKITHD--------------------IYWNGSIGAAKKDLDQKVLAI  260 (405)
T ss_dssp             HHSSHHHHHHHHHHHHHTCEEEEEEEEEEECCCCGGGTT--------------------TTTTSHHHHHHHHHHHHHHHH
T ss_pred             hhchhHHHHHHHHHHHHhhhhCCcEEEEEeCchhhCcCC--------------------CccchHHHHHHHHHHHHHHHH
Confidence            7766654 4555543221   025899999966432100                    011257999999999999988


Q ss_pred             HHHc----CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          183 AEEH----GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       183 ~~~~----~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      +.+.    |++++.+-||.+-.+.... .+. .......+..   .+.     .+-.-+|+++++.+++...
T Consensus       261 A~Ela~~~GIRVNaVaPG~i~T~~s~~-ip~-~p~y~~~l~~---~mk-----r~G~~Ed~a~~i~~L~sd~  322 (405)
T 3zu3_A          261 RESLAAHGGGDARVSVLKAVVSQASSA-IPM-MPLYLSLLFK---VMK-----EKGTHEGCIEQVYSLYKDS  322 (405)
T ss_dssp             HHHHHTTTSCEEEEEECCCCCCHHHHT-STT-HHHHHHHHHH---HHH-----HHTCCCCHHHHHHHHHHHT
T ss_pred             HHHhCcccCeEEEEEEeCCCcCchhhc-CCC-CcHHHHHHHH---HHh-----cCCCcHHHHHHHHHHHhcc
Confidence            8763    7999999999887653211 111 1111111100   111     3334468899999888753

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.52  E-value=2.4e-14  Score=137.99  Aligned_cols=204  Identities=16%  Similarity=0.175  Sum_probs=141.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHH-HCCCe-EEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLL-DHGYS-VTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~-~~g~~-V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      +++++|||||+|.||..+++.|+ ++|.+ |++++|+..     ..+.. +.+.++.....++.++.+|+.|.+++.+++
T Consensus       529 ~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~-----~~~~~~~~~~~l~~~G~~v~~~~~Dvsd~~~v~~~~  603 (795)
T 3slk_A          529 AAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGP-----AASGAAELVAQLTAYGAEVSLQACDVADRETLAKVL  603 (795)
T ss_dssp             TTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGG-----GSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHH
T ss_pred             cccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCcc-----chHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHH
Confidence            45789999999999999999999 78985 888999851     11111 111111112357889999999999999887


Q ss_pred             c------CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCccc
Q 020104           81 A------GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        81 ~------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                      +      .+|+|||+|+.....      .+++ +..+++|+.|+.++.+++. .. . +||++||.......        
T Consensus       604 ~~~~~~~~id~lVnnAGv~~~~~~~~~t~e~~-~~~~~~nv~G~~~l~~~~~-~~-l-~iV~~SS~ag~~g~--------  671 (795)
T 3slk_A          604 ASIPDEHPLTAVVHAAGVLDDGVSESLTVERL-DQVLRPKVDGARNLLELID-PD-V-ALVLFSSVSGVLGS--------  671 (795)
T ss_dssp             HTSCTTSCEEEEEECCCCCCCCCGGGCCHHHH-HHHHCCCCCHHHHHHHHSC-TT-S-EEEEEEETHHHHTC--------
T ss_pred             HHHHHhCCCEEEEECCCcCCCCchhhCCHHHH-HHHHHHHHHHHHHHHHHHh-hC-C-EEEEEccHHhcCCC--------
Confidence            5      479999999875421      1223 3788899999999999983 23 4 99999997765311        


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHH-HHHHHhCCCccccc
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRS-SLALILGNREEYGF  227 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~  227 (331)
                                    +....|+.+|...+.+.+.+.. .|++++.+-||.+-+.+...    .... ....+...+     
T Consensus       672 --------------~g~~~YaAaka~~~alA~~~~~-~Gi~v~sI~pG~v~t~g~~~----~~~~~~~~~~~~~g-----  727 (795)
T 3slk_A          672 --------------GGQGNYAAANSFLDALAQQRQS-RGLPTRSLAWGPWAEHGMAS----TLREAEQDRLARSG-----  727 (795)
T ss_dssp             --------------SSCHHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCCSCCCHHH----HHHHHHHHHHHHTT-----
T ss_pred             --------------CCCHHHHHHHHHHHHHHHHHHH-cCCeEEEEECCeECcchhhc----cccHHHHHHHHhcC-----
Confidence                          1245799999988888877654 69999999999886553110    0000 011111111     


Q ss_pred             CCCccceeHHHHHHHHHHhhcCCC
Q 020104          228 LLNTSMVHVDDVARAHIFLLEYPD  251 (331)
Q Consensus       228 ~~~~~~i~v~D~a~~~~~~~~~~~  251 (331)
                         ...+..++..+++..++..+.
T Consensus       728 ---~~~l~~~e~~~~~~~~l~~~~  748 (795)
T 3slk_A          728 ---LLPISTEEGLSQFDAACGGAH  748 (795)
T ss_dssp             ---BCCCCHHHHHHHHHHHHTSSC
T ss_pred             ---CCCCCHHHHHHHHHHHHhCCC
Confidence               245678888888888887654

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=99.48  E-value=3.2e-13  Score=119.04  Aligned_cols=214  Identities=11%  Similarity=-0.022  Sum_probs=131.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHH-CCCeEEEEecCCCCcccCC-------cccc-ccccCCCCCCCcEEEEeCCCCCCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLD-HGYSVTTTVRSELDPEHRN-------SKDL-SFLKNLPGASERLRIFHADLSHPD   74 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~D~~~~~   74 (331)
                      .+|++|||||++.||.++++.|++ .|.+|++++|+.+......       ...+ +.+.+   ....+..+.+|+.|.+
T Consensus        60 ~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~---~G~~a~~i~~Dvtd~~  136 (422)
T 3s8m_A           60 GPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKA---AGLYSKSINGDAFSDA  136 (422)
T ss_dssp             SCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHH---TTCCEEEEESCTTSHH
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHh---cCCcEEEEEecCCCHH
Confidence            467899999999999999999999 9999999999873111000       0001 11111   1246788999999998


Q ss_pred             cHHHHh--------cCccEEEEecccC-------------C---CC---------------------CCChh--hHHHHH
Q 020104           75 GFDAAI--------AGCTGVLHVATPV-------------D---FE---------------------DKEPE--EVITQR  107 (331)
Q Consensus        75 ~~~~~~--------~~~d~Vih~a~~~-------------~---~~---------------------~~~~~--~~~~~~  107 (331)
                      ++.+++        .++|++||+||..             .   ..                     ..+..  +..+++
T Consensus       137 ~v~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~V  216 (422)
T 3s8m_A          137 ARAQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITV  216 (422)
T ss_dssp             HHHHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHh
Confidence            777654        3589999999852             1   00                     01111  234555


Q ss_pred             HHHHHH-HHHHHHHhcC---CccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHH
Q 020104          108 AINGTL-GILKSCLKSG---TVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFA  183 (331)
Q Consensus       108 n~~~~~-~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~  183 (331)
                      |..+.. .+++++....   .-.++|++||.......                    +......|+.+|...+.+.+.++
T Consensus       217 n~~~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~~~--------------------p~~~~~aY~ASKaAl~~lTrsLA  276 (422)
T 3s8m_A          217 MGGQDWELWIDALEGAGVLADGARSVAFSYIGTEITW--------------------PIYWHGALGKAKVDLDRTAQRLN  276 (422)
T ss_dssp             HSSHHHHHHHHHHHHTTCEEEEEEEEEEEECCCGGGH--------------------HHHTSHHHHHHHHHHHHHHHHHH
T ss_pred             hchhHHHHHHHHHHHHHHhhCCCEEEEEeCchhhccC--------------------CCccchHHHHHHHHHHHHHHHHH
Confidence            555443 5555554321   02589999996543100                    00112479999999999999888


Q ss_pred             HHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          184 EEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       184 ~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      .+.   |++++.+.||.+-.+.... .+. ..........   ++.     ..-..+|+++++.+++...
T Consensus       277 ~Ela~~GIRVNaVaPG~i~T~~~~~-ip~-~~~~~~~~~~---~m~-----r~G~pEdva~~v~~L~sd~  336 (422)
T 3s8m_A          277 ARLAKHGGGANVAVLKSVVTQASAA-IPV-MPLYISMVYK---IMK-----EKGLHEGTIEQLDRLFRER  336 (422)
T ss_dssp             HHHHTTTCEEEEEEECCCCCTTGGG-STH-HHHHHHHHHH---HHH-----HTTCCCCHHHHHHHHHHHT
T ss_pred             HHhCccCEEEEEEEcCCCcChhhhc-CCC-ChHHHHHHHh---hhc-----CCcChHHHHHHHHHHhcch
Confidence            764   8999999999998764321 111 1111111100   111     2234468899988888654

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=99.46  E-value=2.4e-13  Score=127.24  Aligned_cols=205  Identities=13%  Similarity=0.110  Sum_probs=134.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCC-CCCccHHH-H--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADL-SHPDGFDA-A--   79 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~-~~~~~~~~-~--   79 (331)
                      .+|.++||||++.||.++++.|+++|++|++.+|+.      ..+..+.+.+.   ..++..+.+|+ .+.+.+.+ +  
T Consensus       321 ~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~------~~~~~~~i~~~---g~~~~~~~~Dv~~~~~~~~~~~~~  391 (604)
T 2et6_A          321 KDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKD------ATKTVDEIKAA---GGEAWPDQHDVAKDSEAIIKNVID  391 (604)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSC------CHHHHHHHHHT---TCEEEEECCCHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCcc------HHHHHHHHHhc---CCeEEEEEcChHHHHHHHHHHHHH
Confidence            357899999999999999999999999999987643      11112222221   13566778888 55443322 2  


Q ss_pred             -hcCccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCccc
Q 020104           80 -IAGCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        80 -~~~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                       +.++|++||+||....      ..+++ +..+++|+.++..+.+++.    +.+ -.++|++||..... +.       
T Consensus       392 ~~G~iDiLVnNAGi~~~~~~~~~~~~~~-~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IVnisS~ag~~-~~-------  461 (604)
T 2et6_A          392 KYGTIDILVNNAGILRDRSFAKMSKQEW-DSVQQVHLIGTFNLSRLAWPYFVEKQ-FGRIINITSTSGIY-GN-------  461 (604)
T ss_dssp             HHSCCCEEEECCCCCCCBCTTTCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCHHHHS-CC-------
T ss_pred             hcCCCCEEEECCCCCCCCChhhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEECChhhcc-CC-------
Confidence             2369999999996431      11223 3789999999888887764    333 46999999976542 10       


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCccc
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEY  225 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  225 (331)
                                    +....|+.+|.....+.+.++.+.   +++++.+.|+. ..+     +...   ..    ..  ..
T Consensus       462 --------------~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~PG~-~T~-----m~~~---~~----~~--~~  512 (604)
T 2et6_A          462 --------------FGQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHA-ETA-----MTLS---IM----RE--QD  512 (604)
T ss_dssp             --------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC-CCC-----C------------------
T ss_pred             --------------CCChhHHHHHHHHHHHHHHHHHHhCccCeEEEEEcCCC-CCc-----cccc---cC----ch--hh
Confidence                          123479999999999999888764   79999999983 211     1100   00    00  00


Q ss_pred             ccCCCccceeHHHHHHHHHHhhcCCC-C-CceEEEecc
Q 020104          226 GFLLNTSMVHVDDVARAHIFLLEYPD-A-KGRYICSSH  261 (331)
Q Consensus       226 ~~~~~~~~i~v~D~a~~~~~~~~~~~-~-~~~~~~~~~  261 (331)
                           ......+|++.++++++.... . |.++.+.+.
T Consensus       513 -----~~~~~pe~vA~~v~~L~s~~~~itG~~~~vdGG  545 (604)
T 2et6_A          513 -----KNLYHADQVAPLLVYLGTDDVPVTGETFEIGGG  545 (604)
T ss_dssp             -----CCSSCGGGTHHHHHHTTSTTCCCCSCEEEEETT
T ss_pred             -----ccCCCHHHHHHHHHHHhCCccCCCCcEEEECCC
Confidence                 134578899999999887543 2 334555543

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=99.44  E-value=6.1e-13  Score=118.16  Aligned_cols=221  Identities=9%  Similarity=-0.082  Sum_probs=132.2

Q ss_pred             CCceEEEecCcchhHHH--HHHHHHHCCCeEEEEecCCCCcccCC-------ccccccccCCCCCCCcEEEEeCCCCCCc
Q 020104            4 GKGRVCVTGGTGFIASW--LIMRLLDHGYSVTTTVRSELDPEHRN-------SKDLSFLKNLPGASERLRIFHADLSHPD   74 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~--l~~~L~~~g~~V~~~~r~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~D~~~~~   74 (331)
                      .+|++|||||++.||.+  +++.|++.|++|++++|+........       .+.+..+..  .....+..+.+|+.|.+
T Consensus        59 ~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~Dvtd~~  136 (418)
T 4eue_A           59 GPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAK--KKGLVAKNFIEDAFSNE  136 (418)
T ss_dssp             CCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHH--HTTCCEEEEESCTTCHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHH--HcCCcEEEEEeeCCCHH
Confidence            36789999999999999  99999999999999999763111000       111111111  11246888999999998


Q ss_pred             cHHHHhc-------CccEEEEecccC-------------C---CC---------------------CCChh--hHHHHHH
Q 020104           75 GFDAAIA-------GCTGVLHVATPV-------------D---FE---------------------DKEPE--EVITQRA  108 (331)
Q Consensus        75 ~~~~~~~-------~~d~Vih~a~~~-------------~---~~---------------------~~~~~--~~~~~~n  108 (331)
                      +++++++       ++|++||+||..             .   ..                     ..+..  +..+++|
T Consensus       137 ~v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~vn  216 (418)
T 4eue_A          137 TKDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKVM  216 (418)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHh
Confidence            8877664       589999999863             0   00                     00111  1344444


Q ss_pred             HHHHH-HHHHHHHhcC---CccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHH
Q 020104          109 INGTL-GILKSCLKSG---TVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAE  184 (331)
Q Consensus       109 ~~~~~-~l~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~  184 (331)
                      ..+.. .+++++....   .-.++|++||.......                    +......|+.+|.+.+.+.+.++.
T Consensus       217 ~~~~~~~~~~~l~~~~~~~~gg~IV~iSSi~~~~~~--------------------p~~~~~aY~ASKaAL~~ltrsLA~  276 (418)
T 4eue_A          217 GGEDWQEWCEELLYEDCFSDKATTIAYSYIGSPRTY--------------------KIYREGTIGIAKKDLEDKAKLINE  276 (418)
T ss_dssp             SSHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGGGT--------------------TTTTTSHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhhcCCcEEEEEeCchhcCCC--------------------CccccHHHHHHHHHHHHHHHHHHH
Confidence            44433 4455544322   02489999986543100                    001125799999999988888776


Q ss_pred             H----cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCCCCceE
Q 020104          185 E----HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDAKGRY  256 (331)
Q Consensus       185 ~----~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~  256 (331)
                      +    .|++++.+.||.+-.+.... .+. .......+..   .+.     ..-..+|+++++.+++.....+|.+
T Consensus       277 ELa~~~GIrVN~V~PG~v~T~~s~~-ip~-~p~y~~~~~~---~mk-----~~G~~E~v~e~~~~L~sd~~~~g~~  342 (418)
T 4eue_A          277 KLNRVIGGRAFVSVNKALVTKASAY-IPT-FPLYAAILYK---VMK-----EKNIHENCIMQIERMFSEKIYSNEK  342 (418)
T ss_dssp             HHHHHHSCEEEEEECCCCCCHHHHT-STT-HHHHHHHHHH---HHH-----HTTCCCCHHHHHHHHHHHTTSSSSC
T ss_pred             HhCCccCeEEEEEECCcCcChhhhc-CCC-CcHHHHHHHH---HHh-----hcCChHHHHHHHHHHhhccccCCCc
Confidence            5    57999999999987653211 111 1111100000   000     1123457888888888765444443

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=99.43  E-value=5.6e-13  Score=124.79  Aligned_cols=197  Identities=16%  Similarity=0.135  Sum_probs=126.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcc----cCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHH
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPE----HRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDA   78 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~   78 (331)
                      .+|.++||||++.||+++++.|+++|++|++.+|+.....    .+..+. .+.+...   ....   .+|+.|.+++.+
T Consensus         7 ~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~---g~~~---~~d~~d~~~~~~   80 (604)
T 2et6_A            7 KDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKN---GGVA---VADYNNVLDGDK   80 (604)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHT---TCEE---EEECCCTTCHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhc---CCeE---EEEcCCHHHHHH
Confidence            3578999999999999999999999999999887541000    001111 1111111   1122   357777655544


Q ss_pred             Hh-------cCccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCC
Q 020104           79 AI-------AGCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYND  141 (331)
Q Consensus        79 ~~-------~~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~  141 (331)
                      ++       .++|++||+||....      ..+++ +..+++|+.++..+.+++.    +.+ -.++|++||..... +.
T Consensus        81 ~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~-~~~~~vNl~g~~~~~~a~~p~m~~~~-~G~IVnisS~ag~~-~~  157 (604)
T 2et6_A           81 IVETAVKNFGTVHVIINNAGILRDASMKKMTEKDY-KLVIDVHLNGAFAVTKAAWPYFQKQK-YGRIVNTSSPAGLY-GN  157 (604)
T ss_dssp             HHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHH-CC
T ss_pred             HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHH-HHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEECCHHHcC-CC
Confidence            43       269999999996431      11223 3789999999888877664    344 46999999976542 11


Q ss_pred             CCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHH
Q 020104          142 KDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALI  218 (331)
Q Consensus       142 ~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~  218 (331)
                                           +....|+.+|.....+.+.++.+.   +++++.+.|+ +..+         +   ... 
T Consensus       158 ---------------------~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~Pg-~~T~---------m---~~~-  202 (604)
T 2et6_A          158 ---------------------FGQANYASAKSALLGFAETLAKEGAKYNIKANAIAPL-ARSR---------M---TES-  202 (604)
T ss_dssp             ---------------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-CCCH---------H---HHT-
T ss_pred             ---------------------CCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEccC-CcCc---------c---ccc-
Confidence                                 113479999999999999888764   7999999996 2111         0   000 


Q ss_pred             hCCCcccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          219 LGNREEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       219 ~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                       ..+...     ......+|++.++++++...
T Consensus       203 -~~~~~~-----~~~~~pe~vA~~v~~L~s~~  228 (604)
T 2et6_A          203 -IMPPPM-----LEKLGPEKVAPLVLYLSSAE  228 (604)
T ss_dssp             -TSCHHH-----HTTCSHHHHHHHHHHHTSSS
T ss_pred             -cCChhh-----hccCCHHHHHHHHHHHhCCc
Confidence             000000     13457899999999998764

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=99.41  E-value=4.8e-13  Score=116.09  Aligned_cols=176  Identities=14%  Similarity=0.016  Sum_probs=117.3

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCC-------eEEEEecC----CCCcccCCc-cccccccCCCCCCCcEEEEeC
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGY-------SVTTTVRS----ELDPEHRNS-KDLSFLKNLPGASERLRIFHA   68 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   68 (331)
                      |+.+.|||+||||+||+|++++..|+..|.       +|.+++++    .     +.. .....+....  .+-    ..
T Consensus         1 m~~~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~-----~~~~g~~~dl~~~~--~~~----~~   69 (329)
T 1b8p_A            1 MAKTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQ-----KALQGVMMEIDDCA--FPL----LA   69 (329)
T ss_dssp             --CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHH-----HHHHHHHHHHHTTT--CTT----EE
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCcccc-----ccchhhHHHHhhhc--ccc----cC
Confidence            655567999999999999999999998875       79988877    3     101 1111111100  011    13


Q ss_pred             CCCCCccHHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCCCCcc
Q 020104           69 DLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        69 D~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                      |+....++.++++++|+|||+|+.......+.. +.+..|+..++++++++++.+ ...+||++|...-.- .    ...
T Consensus        70 ~i~~~~~~~~al~~aD~Vi~~ag~~~~~g~~r~-dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~-t----~~~  143 (329)
T 1b8p_A           70 GMTAHADPMTAFKDADVALLVGARPRGPGMERK-DLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTN-A----YIA  143 (329)
T ss_dssp             EEEEESSHHHHTTTCSEEEECCCCCCCTTCCHH-HHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHH-H----HHH
T ss_pred             cEEEecCcHHHhCCCCEEEEeCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHH-H----HHH
Confidence            454456788899999999999996553333444 789999999999999999983 345899998632110 0    000


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCC
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGP  201 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~  201 (331)
                      .+..+        --++...++.+++...++...+++..+++...++...|+|.
T Consensus       144 ~~~~~--------~~p~~~v~g~t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~  189 (329)
T 1b8p_A          144 MKSAP--------SLPAKNFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGN  189 (329)
T ss_dssp             HHTCT--------TSCGGGEEECCHHHHHHHHHHHHHHHTCCGGGEESCEEEBC
T ss_pred             HHHcC--------CCCHHHEEEeecHHHHHHHHHHHHHhCcCHHHceEEEEEec
Confidence            00000        01223468889888888888888888888777887778884

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=99.35  E-value=2.6e-12  Score=94.31  Aligned_cols=95  Identities=22%  Similarity=0.240  Sum_probs=75.5

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      .++|+|+|+|+ |++|+++++.|.+.| ++|++++|++     ...   ..+..     .++..+.+|+.+.+++.+++.
T Consensus         3 ~~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~-----~~~---~~~~~-----~~~~~~~~d~~~~~~~~~~~~   68 (118)
T 3ic5_A            3 AMRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDL-----AAL---AVLNR-----MGVATKQVDAKDEAGLAKALG   68 (118)
T ss_dssp             TTCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCH-----HHH---HHHHT-----TTCEEEECCTTCHHHHHHHTT
T ss_pred             CCcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCH-----HHH---HHHHh-----CCCcEEEecCCCHHHHHHHHc
Confidence            45689999999 999999999999999 9999999987     222   22221     467889999999999999999


Q ss_pred             CccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEE
Q 020104           82 GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVV  129 (331)
Q Consensus        82 ~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v  129 (331)
                      ++|+|||+++..                 ....+++++.+.+ ++++.
T Consensus        69 ~~d~vi~~~~~~-----------------~~~~~~~~~~~~g-~~~~~   98 (118)
T 3ic5_A           69 GFDAVISAAPFF-----------------LTPIIAKAAKAAG-AHYFD   98 (118)
T ss_dssp             TCSEEEECSCGG-----------------GHHHHHHHHHHTT-CEEEC
T ss_pred             CCCEEEECCCch-----------------hhHHHHHHHHHhC-CCEEE
Confidence            999999998531                 1357888888888 65444

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.24  E-value=2e-11  Score=130.03  Aligned_cols=168  Identities=17%  Similarity=0.128  Sum_probs=117.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCe-EEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYS-VTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      .++++|||||+|.||..+++.|+++|++ |++++|+..     ..+. ...+.++.....++.++.+|+.|.+++.++++
T Consensus      1883 ~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~-----~~~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~ 1957 (2512)
T 2vz8_A         1883 PHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGI-----RTGYQARQVREWRRQGVQVLVSTSNASSLDGARSLIT 1957 (2512)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCC-----CSHHHHHHHHHHHHTTCEEEEECCCSSSHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCc-----chHHHHHHHHHHHhCCCEEEEEecCCCCHHHHHHHHH
Confidence            4578999999999999999999999987 777888862     2211 11111111112467889999999988887764


Q ss_pred             ------CccEEEEecccCC------CCCCChhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCCCCccc
Q 020104           82 ------GCTGVLHVATPVD------FEDKEPEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        82 ------~~d~Vih~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                            .+|+|||+|+...      ...+++. ..+++|+.|+.++.+++...- ...+||++||.......        
T Consensus      1958 ~~~~~g~id~lVnnAgv~~~~~~~~~t~e~~~-~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag~~g~-------- 2028 (2512)
T 2vz8_A         1958 EATQLGPVGGVFNLAMVLRDAVLENQTPEFFQ-DVSKPKYSGTANLDRVTREACPELDYFVIFSSVSCGRGN-------- 2028 (2512)
T ss_dssp             HHHHHSCEEEEEECCCC-----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHHHTTC--------
T ss_pred             HHHhcCCCcEEEECCCcCCCCchhhCCHHHHH-HHHHHHHHHHHHHHHHHHHhcccCCEEEEecchhhcCCC--------
Confidence                  5899999998643      1223344 788999999999988877541 14699999997654211        


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeC
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVG  200 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G  200 (331)
                                    +....|+.+|...+.+.+.... .|++...+-.+.+-+
T Consensus      2029 --------------~g~~~Y~aaKaal~~l~~~rr~-~Gl~~~a~~~g~~~~ 2065 (2512)
T 2vz8_A         2029 --------------AGQANYGFANSAMERICEKRRH-DGLPGLAVQWGAIGD 2065 (2512)
T ss_dssp             --------------TTCHHHHHHHHHHHHHHHHHHH-TTSCCCEEEECCBCT
T ss_pred             --------------CCcHHHHHHHHHHHHHHHHHHH-CCCcEEEEEccCcCC
Confidence                          1234799999999999986554 488888887776544

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=99.19  E-value=5.8e-11  Score=102.77  Aligned_cols=117  Identities=12%  Similarity=0.014  Sum_probs=82.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      ++|||+||||+|++|+.++..|+++|  ++|+++++++     . ......+.... ....+..    +.+..++.++++
T Consensus         7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~-----~-~~~~~dL~~~~-~~~~v~~----~~~t~d~~~al~   75 (326)
T 1smk_A            7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVN-----A-PGVTADISHMD-TGAVVRG----FLGQQQLEAALT   75 (326)
T ss_dssp             -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSS-----H-HHHHHHHHTSC-SSCEEEE----EESHHHHHHHHT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCC-----c-HhHHHHhhccc-ccceEEE----EeCCCCHHHHcC
Confidence            45799999999999999999999988  8999988876     2 11111121111 0012222    122346778899


Q ss_pred             CccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecc
Q 020104           82 GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSS  133 (331)
Q Consensus        82 ~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS  133 (331)
                      ++|+|||+|+.......... +....|+.+++++++++++.+ .+.+|+++|
T Consensus        76 gaDvVi~~ag~~~~~g~~r~-dl~~~N~~~~~~i~~~i~~~~-p~~~viv~S  125 (326)
T 1smk_A           76 GMDLIIVPAGVPRKPGMTRD-DLFKINAGIVKTLCEGIAKCC-PRAIVNLIS  125 (326)
T ss_dssp             TCSEEEECCCCCCCSSCCCS-HHHHHHHHHHHHHHHHHHHHC-TTSEEEECC
T ss_pred             CCCEEEEcCCcCCCCCCCHH-HHHHHHHHHHHHHHHHHHhhC-CCeEEEEEC
Confidence            99999999986543222333 789999999999999999988 667777776

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=99.11  E-value=1.2e-09  Score=116.72  Aligned_cols=231  Identities=15%  Similarity=0.100  Sum_probs=142.4

Q ss_pred             CCceEEEecCcch-hHHHHHHHHHHCCCeEEEEecCCCCcccCCc--cccccc-cCCCCCCCcEEEEeCCCCCCccHHHH
Q 020104            4 GKGRVCVTGGTGF-IASWLIMRLLDHGYSVTTTVRSELDPEHRNS--KDLSFL-KNLPGASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         4 ~~~~ilVtGatG~-iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      .+|++|||||++. ||.++++.|++.|.+|++++|+.     +..  +.++.+ .++......+..+.+|+.|.+++.++
T Consensus      2135 ~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~-----~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~l 2209 (3089)
T 3zen_D         2135 XDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRL-----DDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKL 2209 (3089)
T ss_dssp             CCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCC-----SHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHH
T ss_pred             CCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCCh-----hhhhhHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHH
Confidence            4678999999999 99999999999999999999987     220  001111 11122224678899999999988877


Q ss_pred             hc-----------CccEEEEecccC----CC-------CCCChh---hHHHHHHHHHHHHHHHHHHhc----CC--ccEE
Q 020104           80 IA-----------GCTGVLHVATPV----DF-------EDKEPE---EVITQRAINGTLGILKSCLKS----GT--VKRV  128 (331)
Q Consensus        80 ~~-----------~~d~Vih~a~~~----~~-------~~~~~~---~~~~~~n~~~~~~l~~~~~~~----~~--~~~~  128 (331)
                      ++           ++|++||+||..    ..       ...++.   +..+++|+.++..+++++...    +.  ...+
T Consensus      2210 v~~i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~i 2289 (3089)
T 3zen_D         2210 VEWVGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHV 2289 (3089)
T ss_dssp             HHHHTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             HHHHHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEE
Confidence            42           479999999961    11       112222   133788888888877766542    20  1122


Q ss_pred             EEecccceeecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH--c--CCcEEEeccCceeCCCCC
Q 020104          129 VYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE--H--GLDLVTLIPSMVVGPFIC  204 (331)
Q Consensus       129 v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~--~--~~~~~ilRp~~v~G~~~~  204 (331)
                      |..+|.. .+  ..                    .....|+.+|.+.+.+.+.++.+  .  +++++.+.||.+-+....
T Consensus      2290 i~~~ss~-~g--~~--------------------g~~~aYsASKaAl~~LtrslA~E~~~a~~IrVn~v~PG~v~tT~l~ 2346 (3089)
T 3zen_D         2290 VLPGSPN-RG--MF--------------------GGDGAYGEAKSALDALENRWSAEKSWAERVSLAHALIGWTKGTGLM 2346 (3089)
T ss_dssp             EEEECSS-TT--SC--------------------SSCSSHHHHGGGHHHHHHHHHHCSTTTTTEEEEEEECCCEECSTTT
T ss_pred             EEECCcc-cc--cC--------------------CCchHHHHHHHHHHHHHHHHHhccccCCCeEEEEEeecccCCCccc
Confidence            2222211 10  00                    01236999999999999999988  3  588999999998754322


Q ss_pred             CCCCccHHHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCCC---Cc--eE-EEecc----ccCHHHHHHHHHh
Q 020104          205 PKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDA---KG--RY-ICSSH----TLTIQEMAEFLSA  274 (331)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~---~~--~~-~~~~~----~~s~~e~~~~i~~  274 (331)
                      .... ...   ......+        ......+|+|.++++++.....   ++  ++ .++|.    ..++.|++..+++
T Consensus      2347 ~~~~-~~~---~~~~~~~--------~r~~~PeEIA~avlfLaS~~a~~~~~~~p~~vdl~GG~~~~~~~~~~~~~~~~~ 2414 (3089)
T 3zen_D         2347 GQND-AIV---SAVEEAG--------VTTYTTDEMAAMLLDLCTVETKVAAAGAPVKVDLTGGLGDIKIDMAELAAKARE 2414 (3089)
T ss_dssp             TTTT-TTH---HHHGGGS--------CBCEEHHHHHHHHHHTTSHHHHHHHHHSCEEEECSBSCSSCCCCHHHHTHHHHH
T ss_pred             ccch-hHH---HHHHhcC--------CCCCCHHHHHHHHHHHhChhhhhHhcCCeEEEEcCCCcCcCCCCHHHHHHHHHH
Confidence            1111 111   1111111        1233889999999999875421   22  23 23332    3578888876543

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=99.08  E-value=5.3e-11  Score=101.98  Aligned_cols=168  Identities=13%  Similarity=0.040  Sum_probs=101.0

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCC--eEEEEec--CCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGY--SVTTTVR--SELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |||+||||+|++|++++..|+..+.  ++.++++  +..     ..+. ...+.........+++...   +    .+++
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~-----~~~~~~~dl~~~~~~~~~~~v~~~---~----~~a~   68 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKED-----DTVGQAADTNHGIAYDSNTRVRQG---G----YEDT   68 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHH-----HHHHHHHHHHHHHTTTCCCEEEEC---C----GGGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChh-----hHHHHHHHHHHHHhhCCCcEEEeC---C----HHHh
Confidence            4899999999999999999998875  6777877  431     1100 1111110001123333332   2    3457


Q ss_pred             cCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhh
Q 020104           81 AGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRK  160 (331)
Q Consensus        81 ~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~  160 (331)
                      +++|+|||+|+.......... +.+..|+..++++++++++.+ ...+|+++|.-+--..   .......          
T Consensus        69 ~~aDvVi~~ag~~~~~g~~r~-dl~~~N~~i~~~i~~~i~~~~-p~~~viv~SNPv~~~~---~~~~~~~----------  133 (303)
T 1o6z_A           69 AGSDVVVITAGIPRQPGQTRI-DLAGDNAPIMEDIQSSLDEHN-DDYISLTTSNPVDLLN---RHLYEAG----------  133 (303)
T ss_dssp             TTCSEEEECCCCCCCTTCCHH-HHHHHHHHHHHHHHHHHHTTC-SCCEEEECCSSHHHHH---HHHHHHS----------
T ss_pred             CCCCEEEEcCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHC-CCcEEEEeCChHHHHH---HHHHHHc----------
Confidence            899999999996543333334 789999999999999999997 6777777763321000   0000000          


Q ss_pred             cCCCCchhHh-hHHHHHHHHHHHHHHcCCcEEEeccCceeCC
Q 020104          161 LDSWGKSYAI-SKTLTERAALEFAEEHGLDLVTLIPSMVVGP  201 (331)
Q Consensus       161 ~~~~~~~Y~~-~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~  201 (331)
                      ..++....|. +-+..-++....++..+++..-++ ..++|.
T Consensus       134 ~~p~~rviG~gt~Ld~~r~~~~la~~l~v~~~~v~-~~v~G~  174 (303)
T 1o6z_A          134 DRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVE-GTILGE  174 (303)
T ss_dssp             SSCGGGEEECCHHHHHHHHHHHHHHHHTCCGGGEE-CCEEEC
T ss_pred             CCCHHHeeecccchhHHHHHHHHHHHhCcCHHHeE-EEEEeC
Confidence            0122345666 555455555566666677655555 667774

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=99.05  E-value=4.8e-10  Score=96.49  Aligned_cols=171  Identities=11%  Similarity=0.057  Sum_probs=103.8

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCC--eEEEEec--CCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGY--SVTTTVR--SELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      |||+||||+||+|++++..|+..+.  ++.++++  +..+. ......+......  ....+.+...+    +++.++++
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~-~~~~~dl~~~~~~--~~~~~~i~~~~----d~l~~al~   73 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKL-EGLREDIYDALAG--TRSDANIYVES----DENLRIID   73 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHH-HHHHHHHHHHHTT--SCCCCEEEEEE----TTCGGGGT
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhh-HHHHHHHHHhHHh--cCCCeEEEeCC----cchHHHhC
Confidence            4899999999999999999998874  6777777  32000 0000011111111  00122222211    23566789


Q ss_pred             CccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhc
Q 020104           82 GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKL  161 (331)
Q Consensus        82 ~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~  161 (331)
                      ++|+|||+|+.......... +.+..|+..++++++++++.+  +++|+++|.-+....   ......          ..
T Consensus        74 gaD~Vi~~Ag~~~~~g~~r~-dl~~~N~~i~~~i~~~i~~~~--~~~vlv~SNPv~~~t---~~~~k~----------~~  137 (313)
T 1hye_A           74 ESDVVIITSGVPRKEGMSRM-DLAKTNAKIVGKYAKKIAEIC--DTKIFVITNPVDVMT---YKALVD----------SK  137 (313)
T ss_dssp             TCSEEEECCSCCCCTTCCHH-HHHHHHHHHHHHHHHHHHHHC--CCEEEECSSSHHHHH---HHHHHH----------HC
T ss_pred             CCCEEEECCCCCCCCCCcHH-HHHHHHHHHHHHHHHHHHHhC--CeEEEEecCcHHHHH---HHHHHh----------hC
Confidence            99999999997653333444 789999999999999999987  455655553221100   000000          01


Q ss_pred             CCCCchhHh-hHHHHHHHHHHHHHHcCCcEEEeccCceeC
Q 020104          162 DSWGKSYAI-SKTLTERAALEFAEEHGLDLVTLIPSMVVG  200 (331)
Q Consensus       162 ~~~~~~Y~~-~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G  200 (331)
                      .+|...+|. +.+...++...+++..+++..-++. .++|
T Consensus       138 ~p~~rviG~gt~LD~~r~~~~la~~lgv~~~~v~~-~v~G  176 (313)
T 1hye_A          138 FERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRT-RIIG  176 (313)
T ss_dssp             CCTTSEEECTTHHHHHHHHHHHHHHHTCCGGGEEC-CEEE
T ss_pred             cChhcEEEeCccHHHHHHHHHHHHHhCcCHHHeEE-EEee
Confidence            234456887 7777777877887777876555665 4555

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=98.88  E-value=6.1e-09  Score=78.86  Aligned_cols=106  Identities=12%  Similarity=0.038  Sum_probs=72.2

Q ss_pred             CCC-CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH
Q 020104            1 MEE-GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         1 M~~-~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      |.. ++++|+|+|+ |.+|+.+++.|.+.|++|++++|++     .   ....+.+     .+...+.+|..+.+.+.++
T Consensus         1 m~~~~~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~-----~---~~~~~~~-----~~~~~~~~d~~~~~~l~~~   66 (144)
T 2hmt_A            1 MGRIKNKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINE-----E---KVNAYAS-----YATHAVIANATEENELLSL   66 (144)
T ss_dssp             -----CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCH-----H---HHHTTTT-----TCSEEEECCTTCHHHHHTT
T ss_pred             CCCCcCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCH-----H---HHHHHHH-----hCCEEEEeCCCCHHHHHhc
Confidence            543 3568999997 9999999999999999999999876     2   2222211     2346778999887777665


Q ss_pred             -hcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccce
Q 020104           80 -IAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAA  136 (331)
Q Consensus        80 -~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~  136 (331)
                       +.++|+||++++..           .+.|    ..+++.+++.+ .+++|..++...
T Consensus        67 ~~~~~d~vi~~~~~~-----------~~~~----~~~~~~~~~~~-~~~ii~~~~~~~  108 (144)
T 2hmt_A           67 GIRNFEYVIVAIGAN-----------IQAS----TLTTLLLKELD-IPNIWVKAQNYY  108 (144)
T ss_dssp             TGGGCSEEEECCCSC-----------HHHH----HHHHHHHHHTT-CSEEEEECCSHH
T ss_pred             CCCCCCEEEECCCCc-----------hHHH----HHHHHHHHHcC-CCeEEEEeCCHH
Confidence             67899999987631           1222    23566677777 667776665443

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=98.81  E-value=1.1e-09  Score=93.19  Aligned_cols=80  Identities=15%  Similarity=0.130  Sum_probs=62.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccc-cccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLS-FLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      .+++++||||+|.+|+++++.|++.|++|++++|+.     +..+.+. .+...    .++.++.+|+.|.+++.+++++
T Consensus       118 ~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~-----~~~~~l~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~  188 (287)
T 1lu9_A          118 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL-----DKAQAAADSVNKR----FKVNVTAAETADDASRAEAVKG  188 (287)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH-----HHHHHHHHHHHHH----HTCCCEEEECCSHHHHHHHTTT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCH-----HHHHHHHHHHHhc----CCcEEEEecCCCHHHHHHHHHh
Confidence            457899999999999999999999999999999986     2222211 11110    1356678899999999999999


Q ss_pred             ccEEEEeccc
Q 020104           83 CTGVLHVATP   92 (331)
Q Consensus        83 ~d~Vih~a~~   92 (331)
                      +|+|||+++.
T Consensus       189 ~DvlVn~ag~  198 (287)
T 1lu9_A          189 AHFVFTAGAI  198 (287)
T ss_dssp             CSEEEECCCT
T ss_pred             CCEEEECCCc
Confidence            9999999974

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=98.78  E-value=1.3e-08  Score=89.74  Aligned_cols=97  Identities=22%  Similarity=0.191  Sum_probs=72.8

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |.-..|||+|+|| |++|+.+++.|.+ .++|.+.+|+.     +.   ++.+.      +.+..+..|+.|.+++.+++
T Consensus        12 ~~g~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~-----~~---~~~~~------~~~~~~~~d~~d~~~l~~~~   75 (365)
T 3abi_A           12 IEGRHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNN-----EN---LEKVK------EFATPLKVDASNFDKLVEVM   75 (365)
T ss_dssp             ----CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCH-----HH---HHHHT------TTSEEEECCTTCHHHHHHHH
T ss_pred             ccCCccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCH-----HH---HHHHh------ccCCcEEEecCCHHHHHHHH
Confidence            3344578999998 9999999998865 58999999887     22   22222      34677889999999999999


Q ss_pred             cCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Q 020104           81 AGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTS  132 (331)
Q Consensus        81 ~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  132 (331)
                      +++|+||+++++.           +      ...++++|.+.+  .++|=+|
T Consensus        76 ~~~DvVi~~~p~~-----------~------~~~v~~~~~~~g--~~yvD~s  108 (365)
T 3abi_A           76 KEFELVIGALPGF-----------L------GFKSIKAAIKSK--VDMVDVS  108 (365)
T ss_dssp             TTCSEEEECCCGG-----------G------HHHHHHHHHHHT--CEEEECC
T ss_pred             hCCCEEEEecCCc-----------c------cchHHHHHHhcC--cceEeee
Confidence            9999999998642           0      135888999998  5777655

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=98.73  E-value=2e-08  Score=90.63  Aligned_cols=106  Identities=16%  Similarity=0.195  Sum_probs=75.3

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      +++|+|+| +|++|+++++.|++.|++|++++|+.     +..   +.+.+   ...++..+.+|+.|.+++.++++++|
T Consensus         3 ~k~VlViG-aG~iG~~ia~~L~~~G~~V~v~~R~~-----~~a---~~la~---~~~~~~~~~~Dv~d~~~l~~~l~~~D   70 (450)
T 1ff9_A            3 TKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTL-----ESA---KKLSA---GVQHSTPISLDVNDDAALDAEVAKHD   70 (450)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESSH-----HHH---HHTTT---TCTTEEEEECCTTCHHHHHHHHTTSS
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEECCH-----HHH---HHHHH---hcCCceEEEeecCCHHHHHHHHcCCc
Confidence            57899998 79999999999999999999999986     222   22211   11347788999999988999999999


Q ss_pred             EEEEecccCCCCCCChhhHHHHH--H-------HHHHHHHHHHHHhcCCc
Q 020104           85 GVLHVATPVDFEDKEPEEVITQR--A-------INGTLGILKSCLKSGTV  125 (331)
Q Consensus        85 ~Vih~a~~~~~~~~~~~~~~~~~--n-------~~~~~~l~~~~~~~~~~  125 (331)
                      +|||+++.....  ......++.  |       ...+.+++++|++.+ +
T Consensus        71 vVIn~a~~~~~~--~i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~aG-v  117 (450)
T 1ff9_A           71 LVISLIPYTFHA--TVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAG-I  117 (450)
T ss_dssp             EEEECCC--CHH--HHHHHHHHHTCEEEESSCCCHHHHHTHHHHHHTT-C
T ss_pred             EEEECCccccch--HHHHHHHhCCCeEEEeecccHHHHHHHHHHHHCC-C
Confidence            999999753210  000011221  1       235788999999988 5

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.72  E-value=1.4e-08  Score=76.68  Aligned_cols=74  Identities=20%  Similarity=0.286  Sum_probs=58.3

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH-hcC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA-IAG   82 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~   82 (331)
                      +|++|+|+|+ |.+|+++++.|.+.|++|+++++++        +..+.+.+     .++.++.+|..+++.+.++ +.+
T Consensus         5 ~~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~~--------~~~~~~~~-----~~~~~~~gd~~~~~~l~~~~~~~   70 (141)
T 3llv_A            5 GRYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKSK--------EKIELLED-----EGFDAVIADPTDESFYRSLDLEG   70 (141)
T ss_dssp             -CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESCH--------HHHHHHHH-----TTCEEEECCTTCHHHHHHSCCTT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECCH--------HHHHHHHH-----CCCcEEECCCCCHHHHHhCCccc
Confidence            3568999997 9999999999999999999999987        22222222     3568899999999888776 457


Q ss_pred             ccEEEEecc
Q 020104           83 CTGVLHVAT   91 (331)
Q Consensus        83 ~d~Vih~a~   91 (331)
                      +|+||.+.+
T Consensus        71 ~d~vi~~~~   79 (141)
T 3llv_A           71 VSAVLITGS   79 (141)
T ss_dssp             CSEEEECCS
T ss_pred             CCEEEEecC
Confidence            999997654

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=98.69  E-value=2.5e-07  Score=79.43  Aligned_cols=172  Identities=16%  Similarity=0.148  Sum_probs=103.8

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      |||.|+||+|++|+.++..|++.|  .+|.+++++.     . ......+.... ...+++.+.+    ..+++++++++
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~-----~-~~~a~dL~~~~-~~~~l~~~~~----t~d~~~a~~~a   69 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH-----T-PGVAADLSHIE-TRATVKGYLG----PEQLPDCLKGC   69 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS-----H-HHHHHHHTTSS-SSCEEEEEES----GGGHHHHHTTC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc-----c-HHHHHHHhccC-cCceEEEecC----CCCHHHHhCCC
Confidence            489999999999999999999888  7899999876     1 11111221111 1112222211    13577789999


Q ss_pred             cEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcc-cCCCCCChhhhhh-c
Q 020104           84 TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMM-DETFWSDVDYIRK-L  161 (331)
Q Consensus        84 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~-~E~~~~~~~~~~~-~  161 (331)
                      |+||++|+.......+.. +....|+..++.+++.+++...-.++|++|-..-.-      .++ .+-      .... -
T Consensus        70 DvVvi~ag~~~~~g~~r~-dl~~~n~~i~~~i~~~i~~~~p~a~viv~sNPv~~~------~~i~~~~------~~~~~~  136 (314)
T 1mld_A           70 DVVVIPAGVPRKPGMTRD-DLFNTNATIVATLTAACAQHCPDAMICIISNPVNST------IPITAEV------FKKHGV  136 (314)
T ss_dssp             SEEEECCSCCCCTTCCGG-GGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHH------HHHHHHH------HHHTTC
T ss_pred             CEEEECCCcCCCCCCcHH-HHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCcchh------HHHHHHH------HHHcCC
Confidence            999999986553333344 788999999999999999886345788765421110      000 000      0000 0


Q ss_pred             CCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCC
Q 020104          162 DSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPF  202 (331)
Q Consensus       162 ~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~  202 (331)
                      -++....|.+-+..-++....++..+++..-++ ..++|..
T Consensus       137 ~p~~rvig~t~Ld~~r~~~~la~~l~v~~~~v~-~~v~G~H  176 (314)
T 1mld_A          137 YNPNKIFGVTTLDIVRANAFVAELKGLDPARVS-VPVIGGH  176 (314)
T ss_dssp             CCTTSEEECCHHHHHHHHHHHHHHTTCCGGGCB-CCEEECS
T ss_pred             CCcceEEEeecccHHHHHHHHHHHhCcChHhEE-EEEccCC
Confidence            122334555444455556666666677655555 5667753

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.65  E-value=1.2e-07  Score=71.23  Aligned_cols=98  Identities=11%  Similarity=0.047  Sum_probs=67.5

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH-hcCc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA-IAGC   83 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~   83 (331)
                      +|+|+|+|+ |++|+.+++.|.+.|++|.+++|++     +..   ..+.+.    .++..+.+|..+.+.+.+. +.++
T Consensus         4 ~m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~~-----~~~---~~~~~~----~~~~~~~~d~~~~~~l~~~~~~~~   70 (140)
T 1lss_A            4 GMYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDK-----DIC---KKASAE----IDALVINGDCTKIKTLEDAGIEDA   70 (140)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCH-----HHH---HHHHHH----CSSEEEESCTTSHHHHHHTTTTTC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCH-----HHH---HHHHHh----cCcEEEEcCCCCHHHHHHcCcccC
Confidence            468999986 9999999999999999999999876     222   222110    1456788998887766654 5789


Q ss_pred             cEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Q 020104           84 TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTS  132 (331)
Q Consensus        84 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  132 (331)
                      |+||++...          .  +.|    ..+.+.+++.+ ..++|..+
T Consensus        71 d~vi~~~~~----------~--~~~----~~~~~~~~~~~-~~~ii~~~  102 (140)
T 1lss_A           71 DMYIAVTGK----------E--EVN----LMSSLLAKSYG-INKTIARI  102 (140)
T ss_dssp             SEEEECCSC----------H--HHH----HHHHHHHHHTT-CCCEEEEC
T ss_pred             CEEEEeeCC----------c--hHH----HHHHHHHHHcC-CCEEEEEe
Confidence            999998642          1  122    24555666666 56766533

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=98.65  E-value=2.7e-08  Score=88.74  Aligned_cols=101  Identities=21%  Similarity=0.302  Sum_probs=73.0

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC---CeEEEEecCCCCcccCCcccccc-ccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG---YSVTTTVRSELDPEHRNSKDLSF-LKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |++|+|+|| |++|+.+++.|++.|   .+|.+.+|+.     ++.+.+.. +...  ...++..+.+|+.|.+++.+++
T Consensus         1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~-----~~~~~la~~l~~~--~~~~~~~~~~D~~d~~~l~~~l   72 (405)
T 4ina_A            1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTL-----SKCQEIAQSIKAK--GYGEIDITTVDADSIEELVALI   72 (405)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCH-----HHHHHHHHHHHHT--TCCCCEEEECCTTCHHHHHHHH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCH-----HHHHHHHHHhhhh--cCCceEEEEecCCCHHHHHHHH
Confidence            368999998 999999999999988   3899999987     33222211 1110  0135788999999999999999


Q ss_pred             cC--ccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Q 020104           81 AG--CTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTS  132 (331)
Q Consensus        81 ~~--~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  132 (331)
                      ++  +|+|||++++..                 ...++++|.+.+ + +++-++
T Consensus        73 ~~~~~DvVin~ag~~~-----------------~~~v~~a~l~~g-~-~vvD~a  107 (405)
T 4ina_A           73 NEVKPQIVLNIALPYQ-----------------DLTIMEACLRTG-V-PYLDTA  107 (405)
T ss_dssp             HHHCCSEEEECSCGGG-----------------HHHHHHHHHHHT-C-CEEESS
T ss_pred             HhhCCCEEEECCCccc-----------------ChHHHHHHHHhC-C-CEEEec
Confidence            86  999999987421                 135777888887 4 555443

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=98.63  E-value=1e-07  Score=77.14  Aligned_cols=77  Identities=18%  Similarity=0.311  Sum_probs=54.3

Q ss_pred             CCceEEEecC----------------cchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEe
Q 020104            4 GKGRVCVTGG----------------TGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH   67 (331)
Q Consensus         4 ~~~~ilVtGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (331)
                      .+|+||||||                +|.+|.+++++|++.|++|+++.|+..     ...         ....++..+.
T Consensus         2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~-----~~~---------~~~~~~~~~~   67 (232)
T 2gk4_A            2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRA-----LKP---------EPHPNLSIRE   67 (232)
T ss_dssp             -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTS-----CCC---------CCCTTEEEEE
T ss_pred             CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCcc-----ccc---------cCCCCeEEEE
Confidence            4689999999                999999999999999999999999761     110         0013455543


Q ss_pred             CCCCCCccH----HHHhcCccEEEEecccCCCC
Q 020104           68 ADLSHPDGF----DAAIAGCTGVLHVATPVDFE   96 (331)
Q Consensus        68 ~D~~~~~~~----~~~~~~~d~Vih~a~~~~~~   96 (331)
                        +...+++    .+.+.++|++||+||..++.
T Consensus        68 --v~s~~em~~~v~~~~~~~Dili~aAAvsD~~   98 (232)
T 2gk4_A           68 --ITNTKDLLIEMQERVQDYQVLIHSMAVSDYT   98 (232)
T ss_dssp             --CCSHHHHHHHHHHHGGGCSEEEECSBCCSEE
T ss_pred             --HhHHHHHHHHHHHhcCCCCEEEEcCcccccc
Confidence              3343333    33345799999999976643

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=98.62  E-value=2.7e-08  Score=85.84  Aligned_cols=175  Identities=14%  Similarity=0.048  Sum_probs=101.3

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC--e-----EEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHH
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY--S-----VTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFD   77 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~--~-----V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~   77 (331)
                      .+||.||||+|+||++++..|+..+.  +     +.+++++....  ........+....  .+...    ++.......
T Consensus         3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~--~~~g~a~DL~~~~--~~~~~----~~~~~~~~~   74 (333)
T 5mdh_A            3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMG--VLDGVLMELQDCA--LPLLK----DVIATDKEE   74 (333)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHH--HHHHHHHHHHHTC--CTTEE----EEEEESCHH
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccc--cchhhHhhhHhhh--hcccC----CEEEcCCcH
Confidence            46899999999999999999998764  4     88887753000  0001111111110  01121    111223466


Q ss_pred             HHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCcc-EEEEecccceeecCCCCCCcccCCCCCChh
Q 020104           78 AAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVK-RVVYTSSNAAVFYNDKDVDMMDETFWSDVD  156 (331)
Q Consensus        78 ~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~  156 (331)
                      +.++++|+|||+||.......+.. +.++.|+..++.+++++++.+.-. +++.+|-..-..     -....+...    
T Consensus        75 ~~~~daDvVvitAg~prkpG~tR~-dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNPvd~~-----t~~~~~~~~----  144 (333)
T 5mdh_A           75 IAFKDLDVAILVGSMPRRDGMERK-DLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTN-----CLTASKSAP----  144 (333)
T ss_dssp             HHTTTCSEEEECCSCCCCTTCCTT-TTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHH-----HHHHHHTCT----
T ss_pred             HHhCCCCEEEEeCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCchHHH-----HHHHHHHcC----
Confidence            788999999999986543333444 789999999999999999987222 577666421100     000000000    


Q ss_pred             hhhhcCCCCchh-HhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCC
Q 020104          157 YIRKLDSWGKSY-AISKTLTERAALEFAEEHGLDLVTLIPSMVVGPF  202 (331)
Q Consensus       157 ~~~~~~~~~~~Y-~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~  202 (331)
                           ..|.... +.+-+..-++-...+++.+++...++-..|+|..
T Consensus       145 -----~~p~~~ig~~t~LDs~R~~~~la~~l~v~~~~v~~~vV~GeH  186 (333)
T 5mdh_A          145 -----SIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNH  186 (333)
T ss_dssp             -----TSCGGGEEECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCS
T ss_pred             -----CCCcCEEEEEEhHHHHHHHHHHHHHhCcCHHHeeecEEEEcC
Confidence                 0112223 3455555666666666667766666655557753

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.52  E-value=1.5e-06  Score=66.62  Aligned_cols=75  Identities=13%  Similarity=0.093  Sum_probs=56.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH-hcC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA-IAG   82 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~   82 (331)
                      ..++|+|+|+ |.+|+.+++.|.+.|++|++++|++     +.   ...+..    ..+...+.+|..+.+.+.++ +.+
T Consensus        18 ~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~~-----~~---~~~~~~----~~g~~~~~~d~~~~~~l~~~~~~~   84 (155)
T 2g1u_A           18 KSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKNE-----YA---FHRLNS----EFSGFTVVGDAAEFETLKECGMEK   84 (155)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCG-----GG---GGGSCT----TCCSEEEESCTTSHHHHHTTTGGG
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECCH-----HH---HHHHHh----cCCCcEEEecCCCHHHHHHcCccc
Confidence            3478999995 9999999999999999999999987     22   222210    13456778888877666655 678


Q ss_pred             ccEEEEecc
Q 020104           83 CTGVLHVAT   91 (331)
Q Consensus        83 ~d~Vih~a~   91 (331)
                      +|+||.+.+
T Consensus        85 ad~Vi~~~~   93 (155)
T 2g1u_A           85 ADMVFAFTN   93 (155)
T ss_dssp             CSEEEECSS
T ss_pred             CCEEEEEeC
Confidence            999998765

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.46  E-value=1.5e-07  Score=85.06  Aligned_cols=76  Identities=21%  Similarity=0.273  Sum_probs=60.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHC-CCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDH-GYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      ++++|+|+|+ |++|+.+++.|++. +++|++++|+.     ++.+.+.   +.    .++..+.+|+.|.+++.+++++
T Consensus        22 ~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~-----~ka~~la---~~----~~~~~~~~D~~d~~~l~~~l~~   88 (467)
T 2axq_A           22 MGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTL-----ANAQALA---KP----SGSKAISLDVTDDSALDKVLAD   88 (467)
T ss_dssp             -CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSH-----HHHHHHH---GG----GTCEEEECCTTCHHHHHHHHHT
T ss_pred             CCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCH-----HHHHHHH---Hh----cCCcEEEEecCCHHHHHHHHcC
Confidence            4678999997 99999999999998 78999999987     2222221   11    2456778999998889999999


Q ss_pred             ccEEEEeccc
Q 020104           83 CTGVLHVATP   92 (331)
Q Consensus        83 ~d~Vih~a~~   92 (331)
                      +|+|||+++.
T Consensus        89 ~DvVIn~tp~   98 (467)
T 2axq_A           89 NDVVISLIPY   98 (467)
T ss_dssp             SSEEEECSCG
T ss_pred             CCEEEECCch
Confidence            9999999875

>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A

Probab=98.43  E-value=1.2e-06  Score=76.02  Aligned_cols=90  Identities=8%  Similarity=-0.083  Sum_probs=62.3

Q ss_pred             CCceEEEecCcchhHHHHHHHHH-HCCCeEEEEecCCCCcccCCcc----ccccc-cCCCCCCCcEEEEeCCCCCCccHH
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLL-DHGYSVTTTVRSELDPEHRNSK----DLSFL-KNLPGASERLRIFHADLSHPDGFD   77 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~D~~~~~~~~   77 (331)
                      ..|++|||||+..+|.+.+..|+ ..|..|+++.+..+........    ..... +...........+.+|+.+++++.
T Consensus        49 ~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e~i~  128 (401)
T 4ggo_A           49 APKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSDEIKA  128 (401)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCHHHHH
Confidence            35899999999999999999998 6789999998876311111000    00000 000111246788999999998888


Q ss_pred             HHhc-------CccEEEEecccC
Q 020104           78 AAIA-------GCTGVLHVATPV   93 (331)
Q Consensus        78 ~~~~-------~~d~Vih~a~~~   93 (331)
                      ++++       ++|++||++|..
T Consensus       129 ~vi~~i~~~~G~IDiLVhS~A~~  151 (401)
T 4ggo_A          129 QVIEEAKKKGIKFDLIVYSLASP  151 (401)
T ss_dssp             HHHHHHHHTTCCEEEEEECCCCS
T ss_pred             HHHHHHHHhcCCCCEEEEecccc
Confidence            7764       689999999854

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=98.42  E-value=3.5e-07  Score=70.01  Aligned_cols=77  Identities=21%  Similarity=0.276  Sum_probs=58.5

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH-hcCc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA-IAGC   83 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~   83 (331)
                      .++|+|+|+ |.+|+++++.|.+.|++|++++++++    +..+.+....     ..++.++.+|..+++.+.++ +.++
T Consensus         3 ~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~~----~~~~~~~~~~-----~~~~~~i~gd~~~~~~l~~a~i~~a   72 (153)
T 1id1_A            3 KDHFIVCGH-SILAINTILQLNQRGQNVTVISNLPE----DDIKQLEQRL-----GDNADVIPGDSNDSSVLKKAGIDRC   72 (153)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCH----HHHHHHHHHH-----CTTCEEEESCTTSHHHHHHHTTTTC
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCh----HHHHHHHHhh-----cCCCeEEEcCCCCHHHHHHcChhhC
Confidence            358999995 99999999999999999999999741    1111221111     13678999999999888877 7899


Q ss_pred             cEEEEecc
Q 020104           84 TGVLHVAT   91 (331)
Q Consensus        84 d~Vih~a~   91 (331)
                      |.||-+.+
T Consensus        73 d~vi~~~~   80 (153)
T 1id1_A           73 RAILALSD   80 (153)
T ss_dssp             SEEEECSS
T ss_pred             CEEEEecC
Confidence            99997653

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=98.41  E-value=7.9e-07  Score=71.81  Aligned_cols=73  Identities=15%  Similarity=0.116  Sum_probs=53.5

Q ss_pred             CCceEEEecC----------------cchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEe
Q 020104            4 GKGRVCVTGG----------------TGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH   67 (331)
Q Consensus         4 ~~~~ilVtGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (331)
                      .+|+||||||                ||.+|.+++++|++.|++|+++.|+..     ..        .   ..++.  .
T Consensus         7 ~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~-----l~--------~---~~g~~--~   68 (226)
T 1u7z_A            7 KHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVS-----LP--------T---PPFVK--R   68 (226)
T ss_dssp             TTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCC-----CC--------C---CTTEE--E
T ss_pred             CCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCcc-----cc--------c---CCCCe--E
Confidence            3578999999                699999999999999999999887651     00        0   12333  3


Q ss_pred             CCCCCCccHHHH----hcCccEEEEecccCC
Q 020104           68 ADLSHPDGFDAA----IAGCTGVLHVATPVD   94 (331)
Q Consensus        68 ~D~~~~~~~~~~----~~~~d~Vih~a~~~~   94 (331)
                      .|+.+.+++.+.    +.++|++||+||..+
T Consensus        69 ~dv~~~~~~~~~v~~~~~~~Dili~~Aav~d   99 (226)
T 1u7z_A           69 VDVMTALEMEAAVNASVQQQNIFIGCAAVAD   99 (226)
T ss_dssp             EECCSHHHHHHHHHHHGGGCSEEEECCBCCS
T ss_pred             EccCcHHHHHHHHHHhcCCCCEEEECCcccC
Confidence            466665544443    347999999999765

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=98.40  E-value=1.9e-06  Score=73.99  Aligned_cols=172  Identities=12%  Similarity=0.105  Sum_probs=101.6

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCcccCCccc-cccccCC-CCCCCcEEEEeCCCCCCccH
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGY--SVTTTVRSELDPEHRNSKD-LSFLKNL-PGASERLRIFHADLSHPDGF   76 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~D~~~~~~~   76 (331)
                      |+..++||.|+|+ |++|+.++..|+..|.  +|.+++++.     ++.+. ...+... +-...+++....|       
T Consensus         1 m~~~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~-----~k~~g~a~DL~~~~~~~~~~v~i~~~~-------   67 (326)
T 3pqe_A            1 MNKHVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNK-----EKAMGDVMDLNHGKAFAPQPVKTSYGT-------   67 (326)
T ss_dssp             -CCSCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCH-----HHHHHHHHHHHHTGGGSSSCCEEEEEC-------
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecch-----HHHHHHHHHHHhccccccCCeEEEeCc-------
Confidence            6666789999996 9999999999999886  899998876     21111 0011111 1011234443333       


Q ss_pred             HHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChh
Q 020104           77 DAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVD  156 (331)
Q Consensus        77 ~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~  156 (331)
                      .+.++++|+||.+|+.......+.. +.+..|..-.+.+++.+.+...-..++.+|-..-.         +.+-      
T Consensus        68 ~~a~~~aDvVvi~ag~p~kpG~~R~-dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNPvd~---------~t~~------  131 (326)
T 3pqe_A           68 YEDCKDADIVCICAGANQKPGETRL-ELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVDI---------LTYA------  131 (326)
T ss_dssp             GGGGTTCSEEEECCSCCCCTTCCHH-HHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHH---------HHHH------
T ss_pred             HHHhCCCCEEEEecccCCCCCccHH-HHHHHHHHHHHHHHHHHHHhcCCeEEEEcCChHHH---------HHHH------
Confidence            2357889999999986543323344 78899999999999999988634466655532110         0000      


Q ss_pred             hhhh-cCCCCchhHh-hHHHHHHHHHHHHHHcCCcEEEeccCceeCCC
Q 020104          157 YIRK-LDSWGKSYAI-SKTLTERAALEFAEEHGLDLVTLIPSMVVGPF  202 (331)
Q Consensus       157 ~~~~-~~~~~~~Y~~-~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~  202 (331)
                      .... --++....|. +-+..-++....++..+++..-++. .|+|..
T Consensus       132 ~~k~~g~p~~rviG~gt~LD~~R~~~~la~~lgv~~~~V~~-~V~GeH  178 (326)
T 3pqe_A          132 TWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCA-HIIGEH  178 (326)
T ss_dssp             HHHHHCCCGGGEEECTTHHHHHHHHHHHHHHHTCCGGGEEC-CEEBSS
T ss_pred             HHHhcCCCHHHEEeeccccHHHHHHHHHHHHhCCCHHHcee-eeeecC
Confidence            0000 0122334554 4454555555566666776655654 477754

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=98.35  E-value=2.3e-07  Score=80.27  Aligned_cols=171  Identities=9%  Similarity=0.005  Sum_probs=98.3

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      ++||.|+|++|++|+.++..|+..|  .+|.+++++.     .+.+. ...+........++.       -..+..+.++
T Consensus         8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~-----~k~~g~a~DL~~~~~~~~~i~-------~t~d~~~al~   75 (343)
T 3fi9_A            8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFA-----VGLEGVAEEIRHCGFEGLNLT-------FTSDIKEALT   75 (343)
T ss_dssp             SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCH-----HHHHHHHHHHHHHCCTTCCCE-------EESCHHHHHT
T ss_pred             CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCc-----hhHHHHHHhhhhCcCCCCceE-------EcCCHHHHhC
Confidence            5799999999999999999999888  5899998865     11111 111111100001222       1235677889


Q ss_pred             CccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCcc-EEEEecccceeecCCCCCCcccCCCCCChhhhhh
Q 020104           82 GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVK-RVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRK  160 (331)
Q Consensus        82 ~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~  160 (331)
                      ++|+||.+||.......... +.+..|+...+.+.+.+.+...-. .++.+|-..-..    .......         ..
T Consensus        76 dADvVvitaG~p~kpG~~R~-dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsNPvd~~----t~i~~k~---------sg  141 (343)
T 3fi9_A           76 DAKYIVSSGGAPRKEGMTRE-DLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNPADIT----GLVTLIY---------SG  141 (343)
T ss_dssp             TEEEEEECCC-------CHH-HHHHHHHHHHHHHHHHHHHHCTTCCEEEECSSSHHHH----HHHHHHH---------HT
T ss_pred             CCCEEEEccCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHhccCcEEEEEecCchHHH----HHHHHHH---------cC
Confidence            99999999986543323344 788999999999999999886333 355555321000    0000000         00


Q ss_pred             cCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCC
Q 020104          161 LDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPF  202 (331)
Q Consensus       161 ~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~  202 (331)
                       -++....+.+-+...++....+++.+++..-++-..|+|..
T Consensus       142 -~p~~rv~g~t~LDs~R~~~~la~~l~v~~~~v~~~~ViGeH  182 (343)
T 3fi9_A          142 -LKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGH  182 (343)
T ss_dssp             -CCGGGEEEECCHHHHHHHHHHHHHHTSCGGGEECCCEEESS
T ss_pred             -CCcceEEEecCcHHHHHHHHHHHHhCcCHHHcccceEEEcC
Confidence             11222335555555566666666667766666544566653

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.23  E-value=2.1e-06  Score=64.57  Aligned_cols=74  Identities=14%  Similarity=0.127  Sum_probs=58.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH-hcC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA-IAG   82 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~   82 (331)
                      ++++|+|.|+ |.+|+.+++.|.+.|++|+++++++     +   ..+.+.+     .++..+.+|..+++.+.++ +.+
T Consensus         6 ~~~~viIiG~-G~~G~~la~~L~~~g~~v~vid~~~-----~---~~~~~~~-----~g~~~i~gd~~~~~~l~~a~i~~   71 (140)
T 3fwz_A            6 ICNHALLVGY-GRVGSLLGEKLLASDIPLVVIETSR-----T---RVDELRE-----RGVRAVLGNAANEEIMQLAHLEC   71 (140)
T ss_dssp             CCSCEEEECC-SHHHHHHHHHHHHTTCCEEEEESCH-----H---HHHHHHH-----TTCEEEESCTTSHHHHHHTTGGG
T ss_pred             CCCCEEEECc-CHHHHHHHHHHHHCCCCEEEEECCH-----H---HHHHHHH-----cCCCEEECCCCCHHHHHhcCccc
Confidence            3468999995 9999999999999999999999988     2   2222222     3678899999998877765 568


Q ss_pred             ccEEEEecc
Q 020104           83 CTGVLHVAT   91 (331)
Q Consensus        83 ~d~Vih~a~   91 (331)
                      +|.||-+.+
T Consensus        72 ad~vi~~~~   80 (140)
T 3fwz_A           72 AKWLILTIP   80 (140)
T ss_dssp             CSEEEECCS
T ss_pred             CCEEEEECC
Confidence            999986543

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=98.21  E-value=1.4e-05  Score=68.69  Aligned_cols=117  Identities=7%  Similarity=0.083  Sum_probs=71.6

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCcccCCcc-ccccccCCCCCCCcEEEEeCCCCCCccHH
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGY--SVTTTVRSELDPEHRNSK-DLSFLKNLPGASERLRIFHADLSHPDGFD   77 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~   77 (331)
                      |+.+++||.|+|+ |++|..++..|+..+.  +|.+++++..     ..+ ....+.........+++.. +  +    .
T Consensus         3 m~~~~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~-----~~~g~~~dl~~~~~~~~~~~i~~-~--~----~   69 (318)
T 1y6j_A            3 MVKSRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKE-----KAIGEAMDINHGLPFMGQMSLYA-G--D----Y   69 (318)
T ss_dssp             ----CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC--------CCHHHHHHTTSCCCTTCEEEC-----C----G
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChH-----HHHHHHHHHHHhHHhcCCeEEEE-C--C----H
Confidence            4334578999997 9999999999999886  8999998862     221 1122211111112333332 1  2    2


Q ss_pred             HHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEe
Q 020104           78 AAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYT  131 (331)
Q Consensus        78 ~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~  131 (331)
                      +.++++|+||.+++.......... +....|+...+.+++.+.+...-..+|.+
T Consensus        70 ~a~~~aDvVii~~g~p~k~g~~r~-dl~~~n~~i~~~i~~~i~~~~p~a~viv~  122 (318)
T 1y6j_A           70 SDVKDCDVIVVTAGANRKPGETRL-DLAKKNVMIAKEVTQNIMKYYNHGVILVV  122 (318)
T ss_dssp             GGGTTCSEEEECCCC------CHH-HHHHHHHHHHHHHHHHHHHHCCSCEEEEC
T ss_pred             HHhCCCCEEEEcCCCCCCCCcCHH-HHHHhhHHHHHHHHHHHHHhCCCcEEEEe
Confidence            357899999999986432222333 77899999999999999987533455554

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=98.19  E-value=1.5e-06  Score=70.60  Aligned_cols=72  Identities=21%  Similarity=0.251  Sum_probs=57.2

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH-hcCcc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA-IAGCT   84 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d   84 (331)
                      |+|+|+|+ |.+|+++++.|.+.|++|+++++++     +.   .+.+.+.    .++.++.+|..+.+.+.++ +.++|
T Consensus         1 M~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~~-----~~---~~~l~~~----~~~~~i~gd~~~~~~l~~a~i~~ad   67 (218)
T 3l4b_C            1 MKVIIIGG-ETTAYYLARSMLSRKYGVVIINKDR-----EL---CEEFAKK----LKATIIHGDGSHKEILRDAEVSKND   67 (218)
T ss_dssp             CCEEEECC-HHHHHHHHHHHHHTTCCEEEEESCH-----HH---HHHHHHH----SSSEEEESCTTSHHHHHHHTCCTTC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCH-----HH---HHHHHHH----cCCeEEEcCCCCHHHHHhcCcccCC
Confidence            47999996 9999999999999999999999987     22   2222111    2568899999999888877 67899


Q ss_pred             EEEEec
Q 020104           85 GVLHVA   90 (331)
Q Consensus        85 ~Vih~a   90 (331)
                      +||-+.
T Consensus        68 ~vi~~~   73 (218)
T 3l4b_C           68 VVVILT   73 (218)
T ss_dssp             EEEECC
T ss_pred             EEEEec
Confidence            999654

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.17  E-value=5.7e-06  Score=65.20  Aligned_cols=73  Identities=18%  Similarity=0.153  Sum_probs=57.1

Q ss_pred             CceEEEecCcchhHHHHHHHHHHC-CCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH--hc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDH-GYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA--IA   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~--~~   81 (331)
                      +++|+|+| .|.+|+.+++.|.+. |++|++++|++     +.   ...+.+     .++..+.+|..+.+.+.++  +.
T Consensus        39 ~~~v~IiG-~G~~G~~~a~~L~~~~g~~V~vid~~~-----~~---~~~~~~-----~g~~~~~gd~~~~~~l~~~~~~~  104 (183)
T 3c85_A           39 HAQVLILG-MGRIGTGAYDELRARYGKISLGIEIRE-----EA---AQQHRS-----EGRNVISGDATDPDFWERILDTG  104 (183)
T ss_dssp             TCSEEEEC-CSHHHHHHHHHHHHHHCSCEEEEESCH-----HH---HHHHHH-----TTCCEEECCTTCHHHHHTBCSCC
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHhccCCeEEEEECCH-----HH---HHHHHH-----CCCCEEEcCCCCHHHHHhccCCC
Confidence            45899998 599999999999999 99999999987     22   222222     3567788999888777776  67


Q ss_pred             CccEEEEecc
Q 020104           82 GCTGVLHVAT   91 (331)
Q Consensus        82 ~~d~Vih~a~   91 (331)
                      ++|+||.+.+
T Consensus       105 ~ad~vi~~~~  114 (183)
T 3c85_A          105 HVKLVLLAMP  114 (183)
T ss_dssp             CCCEEEECCS
T ss_pred             CCCEEEEeCC
Confidence            8999997654

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=98.11  E-value=3.2e-06  Score=72.39  Aligned_cols=113  Identities=12%  Similarity=0.078  Sum_probs=70.1

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCccc-cccccCC---CCCCCcEEEEeCCCCCCccHHHH
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKD-LSFLKNL---PGASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      +|||.|+|| |.+|..++..|+..|+ +|.+++++..     ..+. ...+...   .....++... .|      . +.
T Consensus         2 ~~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~~~-----~~~g~~~dl~~~~~~~~~~~~i~~t-~d------~-~a   67 (309)
T 1ur5_A            2 RKKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEG-----VPQGKALDLYEASPIEGFDVRVTGT-NN------Y-AD   67 (309)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSSS-----HHHHHHHHHHTTHHHHTCCCCEEEE-SC------G-GG
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCCcc-----HHHHHHHhHHHhHhhcCCCeEEEEC-CC------H-HH
Confidence            479999998 9999999999999996 8888888762     1111 1111110   0001122211 22      3 45


Q ss_pred             hcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecc
Q 020104           80 IAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSS  133 (331)
Q Consensus        80 ~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS  133 (331)
                      ++++|+||.+++.......... +....|....+.+.+.+.+.. ...+|.+.|
T Consensus        68 ~~~aD~Vi~a~g~p~~~g~~r~-dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~t  119 (309)
T 1ur5_A           68 TANSDVIVVTSGAPRKPGMSRE-DLIKVNADITRACISQAAPLS-PNAVIIMVN  119 (309)
T ss_dssp             GTTCSEEEECCCC--------C-HHHHHHHHHHHHHHHHHGGGC-TTCEEEECC
T ss_pred             HCCCCEEEEcCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHhhC-CCeEEEEcC
Confidence            7899999999976442222222 667888899999999999886 444444444

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=98.08  E-value=1.2e-05  Score=68.83  Aligned_cols=123  Identities=15%  Similarity=0.110  Sum_probs=77.9

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCC-CCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHH
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSE-LDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDA   78 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~   78 (331)
                      |++.++||.|+|+ |.+|..++..|+..|+ +|.++++++ ..........+...........++.. ..|       .+
T Consensus         4 m~~~~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~-t~d-------~~   74 (315)
T 3tl2_A            4 MTIKRKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIG-TSD-------YA   74 (315)
T ss_dssp             CCCCCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEE-ESC-------GG
T ss_pred             cccCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEE-cCC-------HH
Confidence            5444578999996 9999999999999999 999999873 10000000011100000001112221 112       24


Q ss_pred             HhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecc
Q 020104           79 AIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSS  133 (331)
Q Consensus        79 ~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS  133 (331)
                      .++++|+||-+|+.......+.. +.++.|..-.+.+.+.+.+...-..++.+|.
T Consensus        75 a~~~aDvVIiaag~p~kpg~~R~-dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsN  128 (315)
T 3tl2_A           75 DTADSDVVVITAGIARKPGMSRD-DLVATNSKIMKSITRDIAKHSPNAIIVVLTN  128 (315)
T ss_dssp             GGTTCSEEEECCSCCCCTTCCHH-HHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             HhCCCCEEEEeCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence            67899999999986543333444 8899999999999999998763446666553

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=98.07  E-value=1.2e-05  Score=68.97  Aligned_cols=169  Identities=12%  Similarity=0.091  Sum_probs=88.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCcccCCcc-ccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGY--SVTTTVRSELDPEHRNSK-DLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      .++||.|+|+ |.+|+.++..|+..|.  +|.+++++.     +..+ ....+.........+.....|       .+.+
T Consensus         8 ~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~-----~k~~g~a~DL~~~~~~~~~~~i~~~~-------~~a~   74 (326)
T 3vku_A            8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFK-----DKTKGDAIDLEDALPFTSPKKIYSAE-------YSDA   74 (326)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCH-----HHHHHHHHHHHTTGGGSCCCEEEECC-------GGGG
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCCh-----HHHHHHHhhHhhhhhhcCCcEEEECc-------HHHh
Confidence            4579999996 9999999999998886  899998865     2111 001111110001233443332       2457


Q ss_pred             cCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhh-
Q 020104           81 AGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIR-  159 (331)
Q Consensus        81 ~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~-  159 (331)
                      +++|+||.+|+.......+.. +.++.|..-.+.+.+.+.+...-..++.+|-..-.         +.+-      ... 
T Consensus        75 ~~aDiVvi~ag~~~kpG~tR~-dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtNPvdi---------~t~~------~~k~  138 (326)
T 3vku_A           75 KDADLVVITAGAPQKPGETRL-DLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDI---------LTYA------TWKL  138 (326)
T ss_dssp             TTCSEEEECCCCC-----------------CHHHHHHHHHTTTCCSEEEECSSSHHH---------HHHH------HHHH
T ss_pred             cCCCEEEECCCCCCCCCchHH-HHHHHHHHHHHHHHHHHHhcCCceEEEEccCchHH---------HHHH------HHHh
Confidence            899999999986442222333 77889999999999999988644466655531100         0000      000 


Q ss_pred             hcCCCCchhHh-hHHHHHHHHHHHHHHcCCcEEEeccCceeCCC
Q 020104          160 KLDSWGKSYAI-SKTLTERAALEFAEEHGLDLVTLIPSMVVGPF  202 (331)
Q Consensus       160 ~~~~~~~~Y~~-~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~  202 (331)
                      ..-++....|. +-+..-++....++..+++..-++. .|+|..
T Consensus       139 ~g~p~~rviG~gt~LD~~R~~~~la~~lgv~~~~V~~-~ViGeH  181 (326)
T 3vku_A          139 SGFPKNRVVGSGTSLDTARFRQSIAKMVNVDARSVHA-YIMGEH  181 (326)
T ss_dssp             HCCCGGGEEECTTHHHHHHHHHHHHHHHTSCGGGEEC-CEEBSS
T ss_pred             cCCCHHHeeeecccCcHHHHHHHHHHHhCCCHHHCeE-EEEcCC
Confidence            00122334454 4444455555556666776555554 577754

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=98.06  E-value=3.7e-05  Score=65.59  Aligned_cols=171  Identities=14%  Similarity=0.094  Sum_probs=101.6

Q ss_pred             ceEEEecCcchhHHHHHHHHHHC-C--CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDH-G--YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~-g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      |||.|+||+|.+|+.++..|.++ +  .++.+++++. +    .......+.... ....+..+.+     ....+.+++
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~----~~G~a~Dl~~~~-~~~~v~~~~~-----~~~~~~~~~   69 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-V----TPGVAVDLSHIP-TAVKIKGFSG-----EDATPALEG   69 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-T----HHHHHHHHHTSC-SSEEEEEECS-----SCCHHHHTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-C----chhHHHHhhCCC-CCceEEEecC-----CCcHHHhCC
Confidence            48999999999999999999875 4  5888888875 1    111112222211 0011222211     123567889


Q ss_pred             ccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcc-cCCCCCChhhhh--
Q 020104           83 CTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMM-DETFWSDVDYIR--  159 (331)
Q Consensus        83 ~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~-~E~~~~~~~~~~--  159 (331)
                      +|+||-+|+.......+.. +.++.|..-.+.+.+.+.+...-..++.+|-..-.      ..++ .|       ...  
T Consensus        70 aDivii~ag~~rkpG~~R~-dll~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvd~------~t~~a~~-------~~k~s  135 (312)
T 3hhp_A           70 ADVVLISAGVARKPGMDRS-DLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNT------TVAIAAE-------VLKKA  135 (312)
T ss_dssp             CSEEEECCSCSCCTTCCHH-HHHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHH------HHHHHHH-------HHHHT
T ss_pred             CCEEEEeCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHCCCcEEEEecCcchh------HHHHHHH-------HHHHc
Confidence            9999999986543333444 88999999999999999988633466665531100      0000 00       000  


Q ss_pred             hcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCC
Q 020104          160 KLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPF  202 (331)
Q Consensus       160 ~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~  202 (331)
                      ...++....|..-+..-++....++..+++..-++ ..|+|..
T Consensus       136 g~~p~~rv~G~~~LD~~R~~~~la~~lgv~~~~v~-~~V~G~H  177 (312)
T 3hhp_A          136 GVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVE-VPVIGGH  177 (312)
T ss_dssp             TCCCTTSEEECCHHHHHHHHHHHHHHHTCCGGGCC-CCEEECS
T ss_pred             CCCCcceEEEEechhHHHHHHHHHHHhCcChhHcc-eeEEecc
Confidence            00123345666644455555566666677766677 6677764

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=98.02  E-value=5.2e-05  Score=65.47  Aligned_cols=114  Identities=13%  Similarity=0.052  Sum_probs=74.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCccc-cccccCC---CCCCCcEEEEeCCCCCCccHHH
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKD-LSFLKNL---PGASERLRIFHADLSHPDGFDA   78 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~   78 (331)
                      ++|||.|+|| |.+|..++..|+..|+ +|.+++++..     ..+. ...+...   .....++..       -.++.+
T Consensus         8 ~~~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~-----~~~~~~~~l~~~~~~~~~~~~i~~-------t~d~~e   74 (331)
T 1pzg_A            8 RRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKG-----MPEGKALDLSHVTSVVDTNVSVRA-------EYSYEA   74 (331)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSS-----HHHHHHHHHHHHHHHTTCCCCEEE-------ECSHHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChh-----HHHHHHHHHHhhhhccCCCCEEEE-------eCCHHH
Confidence            3468999997 9999999999999998 9999999872     2222 1111100   001112221       134666


Q ss_pred             HhcCccEEEEecccCCCCCC-----ChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEe
Q 020104           79 AIAGCTGVLHVATPVDFEDK-----EPEEVITQRAINGTLGILKSCLKSGTVKRVVYT  131 (331)
Q Consensus        79 ~~~~~d~Vih~a~~~~~~~~-----~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~  131 (331)
                      .++++|+||-+++.......     ... +....|..-.+.+.+.+.+...-..+|.+
T Consensus        75 a~~~aDiVi~a~g~p~~~g~~~~~~~r~-dl~~~n~~i~~~i~~~i~~~~p~a~vi~~  131 (331)
T 1pzg_A           75 ALTGADCVIVTAGLTKVPGKPDSEWSRN-DLLPFNSKIIREIGQNIKKYCPKTFIIVV  131 (331)
T ss_dssp             HHTTCSEEEECCSCSSCTTCCGGGCCGG-GGHHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred             HhCCCCEEEEccCCCCCCCcccCCCCHH-HHHHHHHHHHHHHHHHHHHHCCCcEEEEE
Confidence            78999999999975432212     233 66788889999999999887522344433

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=97.96  E-value=1.1e-05  Score=64.41  Aligned_cols=98  Identities=17%  Similarity=0.076  Sum_probs=63.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH---h
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA---I   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~---~   80 (331)
                      .+++|+|+||+|.||..+++.+...|++|++++|++     +.   .+.+.++     +... ..|..+.+....+   .
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~-----~~---~~~~~~~-----g~~~-~~d~~~~~~~~~~~~~~  103 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD-----AK---REMLSRL-----GVEY-VGDSRSVDFADEILELT  103 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSH-----HH---HHHHHTT-----CCSE-EEETTCSTHHHHHHHHT
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCH-----HH---HHHHHHc-----CCCE-EeeCCcHHHHHHHHHHh
Confidence            357899999999999999999999999999999876     22   2222222     1111 2366555433332   2


Q ss_pred             c--CccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccc
Q 020104           81 A--GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNA  135 (331)
Q Consensus        81 ~--~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~  135 (331)
                      .  ++|+||++++.          ..       ....++.++..   .++|.+++..
T Consensus       104 ~~~~~D~vi~~~g~----------~~-------~~~~~~~l~~~---G~~v~~g~~~  140 (198)
T 1pqw_A          104 DGYGVDVVLNSLAG----------EA-------IQRGVQILAPG---GRFIELGKKD  140 (198)
T ss_dssp             TTCCEEEEEECCCT----------HH-------HHHHHHTEEEE---EEEEECSCGG
T ss_pred             CCCCCeEEEECCch----------HH-------HHHHHHHhccC---CEEEEEcCCC
Confidence            2  59999999862          11       22344444443   4899888744

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=97.95  E-value=2.6e-05  Score=67.65  Aligned_cols=99  Identities=13%  Similarity=0.175  Sum_probs=58.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC-----C-eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHH
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG-----Y-SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDA   78 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-----~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~   78 (331)
                      |+||+|.||||++|+.|++.|++++     + ++..+.+..     +....+.....  . ..+.  ...++.+.+  .+
T Consensus         9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~-----~agk~~~~~~~--~-l~~~--~~~~~~~~~--~~   76 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAAT-----SAGSTLGEHHP--H-LTPL--AHRVVEPTE--AA   76 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESS-----CTTSBGGGTCT--T-CGGG--TTCBCEECC--HH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCC-----cCCCchhhhcc--c-cccc--ceeeeccCC--HH
Confidence            4799999999999999999999877     3 777776433     11111211100  0 0000  001111111  23


Q ss_pred             HhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccc
Q 020104           79 AIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNA  135 (331)
Q Consensus        79 ~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~  135 (331)
                      .+.++|+||.+.+...                 +..+++.+ +.|  .++|-+|+..
T Consensus        77 ~~~~~DvVf~alg~~~-----------------s~~~~~~~-~~G--~~vIDlSa~~  113 (352)
T 2nqt_A           77 VLGGHDAVFLALPHGH-----------------SAVLAQQL-SPE--TLIIDCGADF  113 (352)
T ss_dssp             HHTTCSEEEECCTTSC-----------------CHHHHHHS-CTT--SEEEECSSTT
T ss_pred             HhcCCCEEEECCCCcc-----------------hHHHHHHH-hCC--CEEEEECCCc
Confidence            3568999998876421                 23466667 667  4899999865

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=97.94  E-value=5.6e-05  Score=63.93  Aligned_cols=165  Identities=11%  Similarity=0.085  Sum_probs=97.5

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCcccCCcc----ccccccCCCCCCCcEEEEeCCCCCCccHHHH
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGY--SVTTTVRSELDPEHRNSK----DLSFLKNLPGASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      |||.|+|+ |.+|..++..|+..|+  +|.++++++     +..+    .+.......  ....++...+  |    .+.
T Consensus         1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~-----~~~~g~~~dl~~~~~~~--~~~~~i~~t~--d----~~a   66 (294)
T 1oju_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAE-----DLAVGEAMDLAHAAAGI--DKYPKIVGGA--D----YSL   66 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSH-----HHHHHHHHHHHHHHHTT--TCCCEEEEES--C----GGG
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCh-----HHHHHHHHHHHhhhhhc--CCCCEEEEeC--C----HHH
Confidence            48999998 9999999999999887  999999987     2221    111111000  0122222111  1    346


Q ss_pred             hcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhh
Q 020104           80 IAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIR  159 (331)
Q Consensus        80 ~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~  159 (331)
                      ++++|+||.+|+.......+.. +.+..|..-.+.+.+.+.+.+.-..++.+|-..-..    ........         
T Consensus        67 ~~~aDiVViaag~~~kpG~~R~-dl~~~N~~i~~~i~~~i~~~~p~a~iivvsNPvd~~----t~~~~k~~---------  132 (294)
T 1oju_A           67 LKGSEIIVVTAGLARKPGMTRL-DLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVM----TYIMWKES---------  132 (294)
T ss_dssp             GTTCSEEEECCCCCCCSSCCHH-HHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHH----HHHHHHHS---------
T ss_pred             hCCCCEEEECCCCCCCCCCcHH-HHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcchHH----HHHHHHhc---------
Confidence            7899999999986543333444 788999999999999999986445666665421000    00000000         


Q ss_pred             hcCCCCchhHh-hHHHHHHHHHHHHHHcCCcEEEeccCceeCCC
Q 020104          160 KLDSWGKSYAI-SKTLTERAALEFAEEHGLDLVTLIPSMVVGPF  202 (331)
Q Consensus       160 ~~~~~~~~Y~~-~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~  202 (331)
                       .-++....|. +-+..-++-...+ +.+++...  -+.|+|..
T Consensus       133 -g~p~~rviG~gt~LD~~R~~~~la-~l~v~~~~--~~~V~G~H  172 (294)
T 1oju_A          133 -GKPRNEVFGMGNQLDSQRLKERLY-NAGARNIR--RAWIIGEH  172 (294)
T ss_dssp             -CCCTTSEEECSHHHHHHHHHHHHH-HTTCBSCC--CCCEEBCS
T ss_pred             -CCCHHHEeecccccHHHHHHHHHH-HhCCCccC--ceEEEecC
Confidence             0122334555 4455555555566 66776555  45566654

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=97.91  E-value=2.5e-05  Score=65.45  Aligned_cols=38  Identities=24%  Similarity=0.375  Sum_probs=30.0

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHC-CCeEEEEecC
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDH-GYSVTTTVRS   38 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~   38 (331)
                      |+..+|||.|+|++|.+|+.+++.+.+. ++++.++.+.
T Consensus         1 ~~~~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~   39 (273)
T 1dih_A            1 MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALER   39 (273)
T ss_dssp             -CCCBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECC
T ss_pred             CCCCCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence            6655679999999999999999998854 7888755443

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=97.90  E-value=8e-05  Score=63.87  Aligned_cols=118  Identities=15%  Similarity=0.109  Sum_probs=74.3

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      ++||.|+|+ |.+|..++..|+..|+ +|.++++++.+.. .....+...........++.. ..|      . +.++++
T Consensus         7 ~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~-g~~~dl~~~~~~~~~~~~v~~-t~d------~-~a~~~a   76 (324)
T 3gvi_A            7 RNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQ-GKGLDIAESSPVDGFDAKFTG-AND------Y-AAIEGA   76 (324)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHH-HHHHHHHHHHHHHTCCCCEEE-ESS------G-GGGTTC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHH-HHHHHHhchhhhcCCCCEEEE-eCC------H-HHHCCC
Confidence            468999997 9999999999999998 9999999872110 000011111000000122221 122      2 467899


Q ss_pred             cEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecc
Q 020104           84 TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSS  133 (331)
Q Consensus        84 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS  133 (331)
                      |+||.+++.......... +.+..|..-.+.+.+.+.+...-..++.+|-
T Consensus        77 DiVIiaag~p~k~G~~R~-dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN  125 (324)
T 3gvi_A           77 DVVIVTAGVPRKPGMSRD-DLLGINLKVMEQVGAGIKKYAPEAFVICITN  125 (324)
T ss_dssp             SEEEECCSCCCC-----C-HHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CEEEEccCcCCCCCCCHH-HHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence            999999986442222333 6788999999999999998863446666554

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=97.88  E-value=2.2e-05  Score=67.37  Aligned_cols=114  Identities=12%  Similarity=0.007  Sum_probs=75.9

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCcc-ccccccCCC---CCCCcEEEEeCCCCCCccHHHH
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSK-DLSFLKNLP---GASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      ++||.|+| +|.+|..++..|+..+. +|.++++++.     ..+ ....+....   ....++.. ..|       .+.
T Consensus         5 ~~kI~iiG-aG~vG~~~a~~l~~~~~~~v~l~Di~~~-----~~~g~a~dL~~~~~~~~~~~~v~~-t~d-------~~a   70 (321)
T 3p7m_A            5 RKKITLVG-AGNIGGTLAHLALIKQLGDVVLFDIAQG-----MPNGKALDLLQTCPIEGVDFKVRG-TND-------YKD   70 (321)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECSSSS-----HHHHHHHHHHTTHHHHTCCCCEEE-ESC-------GGG
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCCCceEEEEeCChH-----HHHHHHHHHHhhhhhcCCCcEEEE-cCC-------HHH
Confidence            47899999 49999999999999887 9999999872     211 111111110   01112221 122       246


Q ss_pred             hcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecc
Q 020104           80 IAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSS  133 (331)
Q Consensus        80 ~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS  133 (331)
                      ++++|+||.+|+.......... +.+..|..-.+.+++.+.+...-..++.+|-
T Consensus        71 ~~~aDvVIi~ag~p~k~G~~R~-dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN  123 (321)
T 3p7m_A           71 LENSDVVIVTAGVPRKPGMSRD-DLLGINIKVMQTVGEGIKHNCPNAFVICITN  123 (321)
T ss_dssp             GTTCSEEEECCSCCCCTTCCHH-HHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             HCCCCEEEEcCCcCCCCCCCHH-HHHHHhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence            7899999999986543333344 7788999999999999998863446666543

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=97.84  E-value=3.7e-06  Score=67.94  Aligned_cols=72  Identities=24%  Similarity=0.281  Sum_probs=49.7

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEE-eCCCCCCccHHHHhcCcc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF-HADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~d   84 (331)
                      |+|+|+||+|++|+.+++.|++.|++|.+++|++     +..+.+...  .     +. .+ ..|+. ..++.++++++|
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~-----~~~~~~~~~--~-----~~-~~~~~~~~-~~~~~~~~~~~D   66 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRRE-----EKAEAKAAE--Y-----RR-IAGDASIT-GMKNEDAAEACD   66 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH-----HHHHHHHHH--H-----HH-HHSSCCEE-EEEHHHHHHHCS
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHH--h-----cc-ccccCCCC-hhhHHHHHhcCC
Confidence            4799999999999999999999999999999986     222221110  0     00 00 02222 245677788899


Q ss_pred             EEEEecc
Q 020104           85 GVLHVAT   91 (331)
Q Consensus        85 ~Vih~a~   91 (331)
                      +||++..
T Consensus        67 ~Vi~~~~   73 (212)
T 1jay_A           67 IAVLTIP   73 (212)
T ss_dssp             EEEECSC
T ss_pred             EEEEeCC
Confidence            9999865

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=97.81  E-value=9.4e-05  Score=63.55  Aligned_cols=117  Identities=15%  Similarity=0.119  Sum_probs=76.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGY--SVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      .++||.|+|+ |.+|..++..|+.+|.  +|.+++++.     ...+- ...+............+..+  |   . +.+
T Consensus        18 ~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~-----~~~~g~a~DL~~~~~~~~~~~i~~~~--d---~-~~~   85 (331)
T 4aj2_A           18 PQNKITVVGV-GAVGMACAISILMKDLADELALVDVIE-----DKLKGEMMDLQHGSLFLKTPKIVSSK--D---Y-SVT   85 (331)
T ss_dssp             CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCH-----HHHHHHHHHHHHTGGGCSCCEEEECS--S---G-GGG
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCCh-----HHHHHHHHhhhhhhhccCCCeEEEcC--C---H-HHh
Confidence            3579999997 9999999999999886  899998865     11111 11111110000111222221  2   2 247


Q ss_pred             cCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecc
Q 020104           81 AGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSS  133 (331)
Q Consensus        81 ~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS  133 (331)
                      +++|+||.+||.......... +.++.|..-.+.+.+.+.+...-..++.+|-
T Consensus        86 ~~aDiVvi~aG~~~kpG~tR~-dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN  137 (331)
T 4aj2_A           86 ANSKLVIITAGARQQEGESRL-NLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN  137 (331)
T ss_dssp             TTEEEEEECCSCCCCTTCCGG-GGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CCCCEEEEccCCCCCCCccHH-HHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            899999999986553334444 8899999999999999998863446666654

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=97.79  E-value=0.00016  Score=62.50  Aligned_cols=173  Identities=13%  Similarity=0.034  Sum_probs=105.9

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCC-------eEEEEecCCCCcccCCccccc----cccCCCCCCCcEEEEeCCCCCCc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGY-------SVTTTVRSELDPEHRNSKDLS----FLKNLPGASERLRIFHADLSHPD   74 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~D~~~~~   74 (331)
                      .||.|+||+|.||+.|+-.|.+...       ++.+++..+     . ...++    .+... ........+.+     .
T Consensus        25 vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~-----~-~~~~~Gva~DL~~~-~~~~~~~~~~~-----~   92 (345)
T 4h7p_A           25 VKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEP-----A-LKALAGVEAELEDC-AFPLLDKVVVT-----A   92 (345)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGG-----G-HHHHHHHHHHHHHT-TCTTEEEEEEE-----S
T ss_pred             CEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCC-----c-cccchhhhhhhhhc-CccCCCcEEEc-----C
Confidence            4899999999999999998887542       678887654     1 11111    11111 11112222222     1


Q ss_pred             cHHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCCCCcc-cCCCC
Q 020104           75 GFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKDVDMM-DETFW  152 (331)
Q Consensus        75 ~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~-~E~~~  152 (331)
                      +..+.++++|+||-+||.......... +.++.|..-.+.+.+++.+.. +-.+++.+|-..-.      ..++ -+.  
T Consensus        93 ~~~~a~~~advVvi~aG~prkpGmtR~-DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~------~~~i~~~~--  163 (345)
T 4h7p_A           93 DPRVAFDGVAIAIMCGAFPRKAGMERK-DLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANT------NALILLKS--  163 (345)
T ss_dssp             CHHHHTTTCSEEEECCCCCCCTTCCHH-HHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH------HHHHHHHH--
T ss_pred             ChHHHhCCCCEEEECCCCCCCCCCCHH-HHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcch------HHHHHHHH--
Confidence            356778999999999997654444555 899999999999999998753 12355655532100      0000 000  


Q ss_pred             CChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCC
Q 020104          153 SDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFIC  204 (331)
Q Consensus       153 ~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~  204 (331)
                           ....+++....+.+.+..-++-...+++.+++..-++-..|+|....
T Consensus       164 -----~~g~~~~r~i~~~t~LDs~R~~~~la~~~~v~~~~V~~~~V~G~HG~  210 (345)
T 4h7p_A          164 -----AQGKLNPRHVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNHSS  210 (345)
T ss_dssp             -----TTTCSCGGGEEECCHHHHHHHHHHHHHHHTSCGGGEECCEEEBCSST
T ss_pred             -----ccCCCCcceeeeccchhHHHHHHHHHHHHCcChhheecceeecCCCC
Confidence                 00112345556667777777777777777888777776677776433

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=97.78  E-value=1.3e-05  Score=68.49  Aligned_cols=115  Identities=8%  Similarity=0.031  Sum_probs=72.4

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCcccCCcc-ccccccCC-CCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGY--SVTTTVRSELDPEHRNSK-DLSFLKNL-PGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      |||.|+|+ |.+|+.++..|++.|.  +|.++++++.     ..+ ....+... ........+...|  +    .+.++
T Consensus         1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~-----k~~g~a~DL~~~~~~~~~~~~v~~~~--~----~~a~~   68 (314)
T 3nep_X            1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDG-----MPQGKALDMRESSPIHGFDTRVTGTN--D----YGPTE   68 (314)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTT-----HHHHHHHHHHHHHHHHTCCCEEEEES--S----SGGGT
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchH-----HHHHHHHHHhccccccCCCcEEEECC--C----HHHhC
Confidence            48999996 9999999999998886  8999999872     211 00011100 0000122332111  1    24678


Q ss_pred             CccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecc
Q 020104           82 GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSS  133 (331)
Q Consensus        82 ~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS  133 (331)
                      ++|+||-+|+.......+.. +.+..|..-.+.+.+.+.+...-..++.+|-
T Consensus        69 ~aDvVii~ag~~~kpG~~R~-dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN  119 (314)
T 3nep_X           69 DSDVCIITAGLPRSPGMSRD-DLLAKNTEIVGGVTEQFVEGSPDSTIIVVAN  119 (314)
T ss_dssp             TCSEEEECCCC-------CH-HHHHHHHHHHHHHHHHHHTTCTTCEEEECCS
T ss_pred             CCCEEEECCCCCCCCCCCHH-HHHHhhHHHHHHHHHHHHHhCCCcEEEecCC
Confidence            89999999986542223344 7889999999999999998863446665553

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=97.77  E-value=0.00012  Score=62.90  Aligned_cols=168  Identities=12%  Similarity=0.074  Sum_probs=96.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGY--SVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      +++||.|+|| |.+|..++..|+..+.  +|.+++++.     +..+. ...+.........+.+.. |  +    .+.+
T Consensus         8 ~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~-----~~~~g~~~dl~~~~~~~~~~~i~~-~--~----~~a~   74 (326)
T 2zqz_A            8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFK-----DKTKGDAIDLSNALPFTSPKKIYS-A--E----YSDA   74 (326)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCH-----HHHHHHHHHHHTTGGGSCCCEEEE-C--C----GGGG
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCc-----hHhHHHHHHHHHHHHhcCCeEEEE-C--C----HHHh
Confidence            4579999998 9999999999988774  899998865     11111 111111100112333332 2  2    3457


Q ss_pred             cCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhh
Q 020104           81 AGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRK  160 (331)
Q Consensus        81 ~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~  160 (331)
                      +++|+||..++.......... +....|+...+.+.+.+++...-..++.+|-..-.         ..+      .....
T Consensus        75 ~~aDvVii~ag~~~k~g~~R~-dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~---------~t~------~~~k~  138 (326)
T 2zqz_A           75 KDADLVVITAGAPQKPGETRL-DLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDI---------LTY------ATWKL  138 (326)
T ss_dssp             GGCSEEEECCCCC-----CHH-HHHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHH---------HHH------HHHHH
T ss_pred             CCCCEEEEcCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCcHHH---------HHH------HHHHH
Confidence            899999999986442223333 77889999999999999988644566665431110         000      00000


Q ss_pred             -cCCCCchhHh-hHHHHHHHHHHHHHHcCCcEEEeccCceeCC
Q 020104          161 -LDSWGKSYAI-SKTLTERAALEFAEEHGLDLVTLIPSMVVGP  201 (331)
Q Consensus       161 -~~~~~~~Y~~-~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~  201 (331)
                       ..++....|. +-+..-++....++..+++..-++ ..++|.
T Consensus       139 s~~p~~rviG~gt~LD~~R~~~~la~~lgv~~~~v~-~~v~G~  180 (326)
T 2zqz_A          139 SGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVH-AYIMGE  180 (326)
T ss_dssp             HCCCGGGEEECTTHHHHHHHHHHHHHHHTCCGGGEE-CCEEBS
T ss_pred             cCCCHHHEEEccccchHHHHHHHHHHHhCCChhheE-EEEecc
Confidence             0122233454 444445555555666677655555 667774

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=97.76  E-value=5.3e-05  Score=65.13  Aligned_cols=116  Identities=11%  Similarity=0.055  Sum_probs=72.3

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCccc-cccccCC---CCCCCcEEEEeCCCCCCcc
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKD-LSFLKNL---PGASERLRIFHADLSHPDG   75 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~D~~~~~~   75 (331)
                      |+. ++||.|+|| |.+|..++..|+..|+ +|.+++++..     ..+. ...+...   .....++... .      +
T Consensus         1 m~~-~~kI~VIGa-G~vG~~ia~~la~~g~~~v~L~Di~~~-----~l~~~~~~l~~~~~~~~~~~~i~~t-~------d   66 (322)
T 1t2d_A            1 MAP-KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKN-----MPHGKALDTSHTNVMAYSNCKVSGS-N------T   66 (322)
T ss_dssp             -CC-CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSS-----HHHHHHHHHHTHHHHHTCCCCEEEE-C------C
T ss_pred             CCC-CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCHH-----HHHHHHHHHHhhhhhcCCCcEEEEC-C------C
Confidence            554 468999998 9999999999999998 8888888762     2211 1111110   0001122211 2      2


Q ss_pred             HHHHhcCccEEEEecccCCCCCCC-----hhhHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Q 020104           76 FDAAIAGCTGVLHVATPVDFEDKE-----PEEVITQRAINGTLGILKSCLKSGTVKRVVYTS  132 (331)
Q Consensus        76 ~~~~~~~~d~Vih~a~~~~~~~~~-----~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  132 (331)
                      + +.++++|+||-+++........     .. +....|+.-.+.+.+.+.+...-..+|.+|
T Consensus        67 ~-~al~~aD~Vi~a~g~p~k~g~~~qe~~r~-dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t  126 (322)
T 1t2d_A           67 Y-DDLAGADVVIVTAGFTKAPGKSDKEWNRD-DLLPLNNKIMIEIGGHIKKNCPNAFIIVVT  126 (322)
T ss_dssp             G-GGGTTCSEEEECCSCSSCTTCCSTTCCGG-GGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred             H-HHhCCCCEEEEeCCCCCCCCCCcccccHH-HHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            3 4678999999999754321111     23 667888888888998888775233555543

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=97.75  E-value=0.00019  Score=62.08  Aligned_cols=93  Identities=13%  Similarity=0.123  Sum_probs=55.5

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC---eEEEEe-cCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY---SVTTTV-RSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      ++||+|.||||++|+.+++.|.++++   ++.++. |+.      ....+. +       .+......|. +++.    +
T Consensus         6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~------~g~~~~-~-------~g~~i~~~~~-~~~~----~   66 (340)
T 2hjs_A            6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAES------AGQRMG-F-------AESSLRVGDV-DSFD----F   66 (340)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTT------TTCEEE-E-------TTEEEECEEG-GGCC----G
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCC------CCCccc-c-------CCcceEEecC-CHHH----h
Confidence            46899999999999999999996653   555554 222      111111 0       1112111122 2222    4


Q ss_pred             cCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccc
Q 020104           81 AGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNA  135 (331)
Q Consensus        81 ~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~  135 (331)
                      .++|+||-+.+..                 .+..++..+.+.| + ++|-+|+..
T Consensus        67 ~~~DvV~~a~g~~-----------------~s~~~a~~~~~aG-~-kvId~Sa~~  102 (340)
T 2hjs_A           67 SSVGLAFFAAAAE-----------------VSRAHAERARAAG-C-SVIDLSGAL  102 (340)
T ss_dssp             GGCSEEEECSCHH-----------------HHHHHHHHHHHTT-C-EEEETTCTT
T ss_pred             cCCCEEEEcCCcH-----------------HHHHHHHHHHHCC-C-EEEEeCCCC
Confidence            6899999876521                 1345667777778 5 578888754

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=97.74  E-value=4.6e-05  Score=66.01  Aligned_cols=74  Identities=16%  Similarity=0.231  Sum_probs=52.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+++|||+||+|.||..+++.+...|++|++++|+.     +.   ++.++++.     .. ...|..+.+++.+.+.  
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~-----~~---~~~~~~~g-----~~-~~~d~~~~~~~~~~~~~~  210 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSD-----EK---IAYLKQIG-----FD-AAFNYKTVNSLEEALKKA  210 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSH-----HH---HHHHHHTT-----CS-EEEETTSCSCHHHHHHHH
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCH-----HH---HHHHHhcC-----Cc-EEEecCCHHHHHHHHHHH
Confidence            357899999999999999999999999999999876     22   22222221     11 2246666444544432  


Q ss_pred             ---CccEEEEecc
Q 020104           82 ---GCTGVLHVAT   91 (331)
Q Consensus        82 ---~~d~Vih~a~   91 (331)
                         ++|+||++++
T Consensus       211 ~~~~~d~vi~~~g  223 (333)
T 1v3u_A          211 SPDGYDCYFDNVG  223 (333)
T ss_dssp             CTTCEEEEEESSC
T ss_pred             hCCCCeEEEECCC
Confidence               5999999987

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=97.74  E-value=6.4e-05  Score=65.52  Aligned_cols=74  Identities=19%  Similarity=0.290  Sum_probs=52.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+++|||+||+|.+|..+++.+...|.+|++++|++     +..+.   ++++.     .. ...|..+.+++.+.+.  
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~-----~~~~~---~~~~g-----~~-~~~d~~~~~~~~~~~~~~  234 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGE-----GKEEL---FRSIG-----GE-VFIDFTKEKDIVGAVLKA  234 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECST-----THHHH---HHHTT-----CC-EEEETTTCSCHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCH-----HHHHH---HHHcC-----Cc-eEEecCccHhHHHHHHHH
Confidence            357899999999999999999999999999999987     22222   22221     11 1237665555555443  


Q ss_pred             ---CccEEEEecc
Q 020104           82 ---GCTGVLHVAT   91 (331)
Q Consensus        82 ---~~d~Vih~a~   91 (331)
                         ++|+||++++
T Consensus       235 ~~~~~D~vi~~~g  247 (347)
T 2hcy_A          235 TDGGAHGVINVSV  247 (347)
T ss_dssp             HTSCEEEEEECSS
T ss_pred             hCCCCCEEEECCC
Confidence               6999999987

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=97.73  E-value=9.4e-05  Score=63.44  Aligned_cols=166  Identities=11%  Similarity=0.105  Sum_probs=92.8

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGY--SVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      +||.|+|| |.+|..++..|+..+.  ++.+++++.     +..+. ...+.........+++.. |  +    .+.+++
T Consensus         6 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~-----~~~~g~~~dl~~~~~~~~~~~v~~-~--~----~~a~~~   72 (318)
T 1ez4_A            6 QKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVK-----DRTKGDALDLEDAQAFTAPKKIYS-G--E----YSDCKD   72 (318)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSH-----HHHHHHHHHHHGGGGGSCCCEEEE-C--C----GGGGTT
T ss_pred             CEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCc-----hHHHHHHHHHHHHHHhcCCeEEEE-C--C----HHHhCC
Confidence            68999998 9999999999998875  899999875     21111 111111100112333332 2  1    345789


Q ss_pred             ccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhh-c
Q 020104           83 CTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRK-L  161 (331)
Q Consensus        83 ~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~-~  161 (331)
                      +|+||.+++.......... +....|+...+.+.+.+++...-..++.+|-..-.         ..+      ..... .
T Consensus        73 aDvVii~ag~~~~~g~~R~-dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~---------~t~------~~~k~s~  136 (318)
T 1ez4_A           73 ADLVVITAGAPQKPGESRL-DLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDI---------LTY------ATWKFSG  136 (318)
T ss_dssp             CSEEEECCCC-----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHH---------HHH------HHHHHHC
T ss_pred             CCEEEECCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCcHHH---------HHH------HHHHHcC
Confidence            9999999986442222233 67789999999999999988644566665431110         000      00000 0


Q ss_pred             CCCCchhHh-hHHHHHHHHHHHHHHcCCcEEEeccCceeCC
Q 020104          162 DSWGKSYAI-SKTLTERAALEFAEEHGLDLVTLIPSMVVGP  201 (331)
Q Consensus       162 ~~~~~~Y~~-~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~  201 (331)
                      .++....|. +-+..-++....++..+++..-++ ..++|.
T Consensus       137 ~p~~rviG~gt~LD~~R~~~~la~~lgv~~~~v~-~~v~G~  176 (318)
T 1ez4_A          137 FPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVD-AYIMGE  176 (318)
T ss_dssp             CCGGGEEECTTHHHHHHHHHHHHHHHTCCGGGEE-CCEESS
T ss_pred             CCHHHEEeccccchHHHHHHHHHHHhCcChhHEE-EEEecc
Confidence            122233454 444445555555666677655555 667774

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=97.71  E-value=2.4e-05  Score=68.73  Aligned_cols=74  Identities=14%  Similarity=0.093  Sum_probs=55.0

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      .++|+|+|+ |.+|..+++.|...|++|++++|++     ...+....  ...   ..   +.+|..+.+++.+++.++|
T Consensus       166 ~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~-----~~~~~~~~--~~g---~~---~~~~~~~~~~l~~~~~~~D  231 (369)
T 2eez_A          166 PASVVILGG-GTVGTNAAKIALGMGAQVTILDVNH-----KRLQYLDD--VFG---GR---VITLTATEANIKKSVQHAD  231 (369)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHH--HTT---TS---EEEEECCHHHHHHHHHHCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCH-----HHHHHHHH--hcC---ce---EEEecCCHHHHHHHHhCCC
Confidence            478999998 9999999999999999999999987     22222211  011   11   3456666777888888999


Q ss_pred             EEEEeccc
Q 020104           85 GVLHVATP   92 (331)
Q Consensus        85 ~Vih~a~~   92 (331)
                      +||++++.
T Consensus       232 vVi~~~g~  239 (369)
T 2eez_A          232 LLIGAVLV  239 (369)
T ss_dssp             EEEECCC-
T ss_pred             EEEECCCC
Confidence            99999875

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=97.71  E-value=1.8e-05  Score=64.92  Aligned_cols=70  Identities=13%  Similarity=0.118  Sum_probs=55.8

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH-hcCc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA-IAGC   83 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~   83 (331)
                      .++|+|+|+ |.+|+.+++.|.+.|+ |+++++++     +.   ...+.      .++.++.+|..+++.+.++ +.++
T Consensus         9 ~~~viI~G~-G~~G~~la~~L~~~g~-v~vid~~~-----~~---~~~~~------~~~~~i~gd~~~~~~l~~a~i~~a   72 (234)
T 2aef_A            9 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDEN-----VR---KKVLR------SGANFVHGDPTRVSDLEKANVRGA   72 (234)
T ss_dssp             -CEEEEESC-CHHHHHHHHHSTTSEE-EEEESCGG-----GH---HHHHH------TTCEEEESCTTCHHHHHHTTCTTC
T ss_pred             CCEEEEECC-ChHHHHHHHHHHhCCe-EEEEECCH-----HH---HHHHh------cCCeEEEcCCCCHHHHHhcCcchh
Confidence            468999996 9999999999999999 99998877     22   22221      2578899999999888877 7899


Q ss_pred             cEEEEec
Q 020104           84 TGVLHVA   90 (331)
Q Consensus        84 d~Vih~a   90 (331)
                      |.||-+.
T Consensus        73 d~vi~~~   79 (234)
T 2aef_A           73 RAVIVDL   79 (234)
T ss_dssp             SEEEECC
T ss_pred             cEEEEcC
Confidence            9999764

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=97.71  E-value=2.1e-05  Score=67.58  Aligned_cols=117  Identities=18%  Similarity=0.211  Sum_probs=74.1

Q ss_pred             CCC-CCceEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCccc-cccccC-CCCCCCcEEEEeCCCCCCcc
Q 020104            1 MEE-GKGRVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKD-LSFLKN-LPGASERLRIFHADLSHPDG   75 (331)
Q Consensus         1 M~~-~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~D~~~~~~   75 (331)
                      |++ +++||.|+|+ |.+|..++..|+..+  .+|.+++++.     +..+. ...+.. .......+++.. |  +   
T Consensus         1 m~~~~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~-----~~~~~~~~dl~~~~~~~~~~~~i~~-~--~---   68 (316)
T 1ldn_A            1 MKNNGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANE-----SKAIGDAMDFNHGKVFAPKPVDIWH-G--D---   68 (316)
T ss_dssp             CTTTTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSH-----HHHHHHHHHHHHHTTSSSSCCEEEE-C--C---
T ss_pred             CCCCCCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCc-----chHHHHHhhHHHHhhhcCCCeEEEc-C--c---
Confidence            665 3469999998 999999999998876  4899999876     21111 111111 111111333332 1  1   


Q ss_pred             HHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEe
Q 020104           76 FDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYT  131 (331)
Q Consensus        76 ~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~  131 (331)
                       .+.++++|+||-+++.......... +.+..|..-.+.+++.+.+...-..++.+
T Consensus        69 -~~al~~aDvViia~~~~~~~g~~r~-dl~~~n~~i~~~i~~~i~~~~p~a~~iv~  122 (316)
T 1ldn_A           69 -YDDCRDADLVVICAGANQKPGETRL-DLVDKNIAIFRSIVESVMASGFQGLFLVA  122 (316)
T ss_dssp             -GGGTTTCSEEEECCSCCCCTTTCSG-GGHHHHHHHHHHHHHHHHHHTCCSEEEEC
T ss_pred             -HHHhCCCCEEEEcCCCCCCCCCCHH-HHHHcChHHHHHHHHHHHHHCCCCEEEEe
Confidence             2457899999999986543222333 66788888889999998887523345544

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=97.70  E-value=0.00016  Score=62.01  Aligned_cols=116  Identities=10%  Similarity=0.072  Sum_probs=73.8

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      ++||.|+|| |.+|..++..|+..+  .+|.+++++..+.. .....+.......  ...+++.. |  +    .+.+++
T Consensus         6 ~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~-g~~~dl~~~~~~~--~~~~~v~~-~--~----~~a~~~   74 (317)
T 3d0o_A            6 GNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVR-GDVMDLKHATPYS--PTTVRVKA-G--E----YSDCHD   74 (317)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHH-HHHHHHHHHGGGS--SSCCEEEE-C--C----GGGGTT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhh-hhhhhHHhhhhhc--CCCeEEEe-C--C----HHHhCC
Confidence            469999998 999999999999887  48999987651100 0001111111110  02233332 2  2    345789


Q ss_pred             ccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Q 020104           83 CTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTS  132 (331)
Q Consensus        83 ~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  132 (331)
                      +|+||.+++.......... .....|..-.+.+.+.+.+...-..++.+|
T Consensus        75 aDvVvi~ag~~~~~g~~r~-dl~~~n~~i~~~i~~~i~~~~p~a~viv~t  123 (317)
T 3d0o_A           75 ADLVVICAGAAQKPGETRL-DLVSKNLKIFKSIVGEVMASKFDGIFLVAT  123 (317)
T ss_dssp             CSEEEECCCCCCCTTCCHH-HHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             CCEEEECCCCCCCCCCcHH-HHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Confidence            9999999986543223333 678899999999999999886344555543

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.69  E-value=2.7e-05  Score=66.49  Aligned_cols=82  Identities=10%  Similarity=0.061  Sum_probs=55.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCccccccccC-CCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKDLSFLKN-LPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      .+++++|+|+ |.+|+.++..|.+.|. +|++++|++     +..++.+.+.+ +... ....+...++.+.+++.+.+.
T Consensus       153 ~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~-----~~~~~a~~la~~~~~~-~~~~~~~~~~~~~~~l~~~l~  225 (315)
T 3tnl_A          153 IGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKD-----DFYANAEKTVEKINSK-TDCKAQLFDIEDHEQLRKEIA  225 (315)
T ss_dssp             TTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSS-----TTHHHHHHHHHHHHHH-SSCEEEEEETTCHHHHHHHHH
T ss_pred             cCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCC-----chHHHHHHHHHHhhhh-cCCceEEeccchHHHHHhhhc
Confidence            4579999997 8999999999999997 899999984     11222222211 0000 112333345656666778888


Q ss_pred             CccEEEEeccc
Q 020104           82 GCTGVLHVATP   92 (331)
Q Consensus        82 ~~d~Vih~a~~   92 (331)
                      ++|+|||+.+.
T Consensus       226 ~aDiIINaTp~  236 (315)
T 3tnl_A          226 ESVIFTNATGV  236 (315)
T ss_dssp             TCSEEEECSST
T ss_pred             CCCEEEECccC
Confidence            99999998753

>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1

Probab=97.68  E-value=0.00019  Score=60.75  Aligned_cols=92  Identities=27%  Similarity=0.228  Sum_probs=57.8

Q ss_pred             Cce-EEEe-cCc-----------------chhHHHHHHHHHHCCCeEEEEecCCCCcccC-C-ccc--cccccCCCCCCC
Q 020104            5 KGR-VCVT-GGT-----------------GFIASWLIMRLLDHGYSVTTTVRSELDPEHR-N-SKD--LSFLKNLPGASE   61 (331)
Q Consensus         5 ~~~-ilVt-Gat-----------------G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~-~~~--~~~~~~~~~~~~   61 (331)
                      +++ |||| |||                 |-.|.++++++++.|++|+.+.+...-.+.. . ...  +..+........
T Consensus        36 gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~V~lv~g~~sl~p~~r~~~~~~~~~~~~~~~~~~~  115 (313)
T 1p9o_A           36 GRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAHRFPPQTWLSALRPSGPALS  115 (313)
T ss_dssp             TCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCEEEEEEETTSCCTTGGGSCHHHHHHHCEECCC-CC
T ss_pred             CCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCEEEEEecCCCcCcchhccCccchhhhhcccccccc
Confidence            355 9998 457                 9999999999999999999999865210000 0 000  111111011123


Q ss_pred             cEEEEeCCCCCCccHHHHh-------------------------------------cCccEEEEecccCCCC
Q 020104           62 RLRIFHADLSHPDGFDAAI-------------------------------------AGCTGVLHVATPVDFE   96 (331)
Q Consensus        62 ~~~~~~~D~~~~~~~~~~~-------------------------------------~~~d~Vih~a~~~~~~   96 (331)
                      ++..+.+|+....++.+++                                     .+.|++|++||..++.
T Consensus       116 ~~~~i~v~v~sa~~m~~av~~~~~~~~~~~l~~i~f~tv~eyl~~L~~~~~~l~~~~~~di~i~aAAVsDf~  187 (313)
T 1p9o_A          116 GLLSLEAEENALPGFAEALRSYQEAAAAGTFLVVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVSDFY  187 (313)
T ss_dssp             SEEEEEEETTTSTTHHHHHHHHHHHHHHTCEEEEEECBHHHHHHHHHHHHHHHGGGGGGEEEEECSBCCSEE
T ss_pred             ccceeeeccccHHHHHHHHHHHhhhhccccceeeccccHHHHHHHHHHhhHHhhccCCCCEEEECCchhhcc
Confidence            5566777777666555544                                     3689999999987754

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=97.67  E-value=1.4e-05  Score=67.76  Aligned_cols=39  Identities=13%  Similarity=0.226  Sum_probs=35.1

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      |..|||+|.|+|+||.+|+.+++.|.+.|++|++++|++
T Consensus         7 ~~~mmm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A            7 NDVGPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             CSCCCCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             ccccCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            445567999999889999999999999999999999876

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=97.65  E-value=0.00015  Score=62.34  Aligned_cols=117  Identities=15%  Similarity=0.079  Sum_probs=73.1

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCcccc-ccccCC---CCCCCcEEEEeCCCCCCcc
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKDL-SFLKNL---PGASERLRIFHADLSHPDG   75 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~D~~~~~~   75 (331)
                      |+. +|||.|+|+ |.+|+.++..|++.|+ +|.++++++.     ..+.. ..+...   .....++... .|      
T Consensus         1 M~~-~~kI~VIGa-G~~G~~ia~~la~~g~~~V~l~D~~~~-----~~~~~~~~l~~~~~~~~~~~~i~~t-~d------   66 (317)
T 2ewd_A            1 MIE-RRKIAVIGS-GQIGGNIAYIVGKDNLADVVLFDIAEG-----IPQGKALDITHSMVMFGSTSKVIGT-DD------   66 (317)
T ss_dssp             CCC-CCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSS-----HHHHHHHHHHHHHHHHTCCCCEEEE-SC------
T ss_pred             CCC-CCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCch-----HHHHHHHHHHhhhhhcCCCcEEEEC-CC------
Confidence            654 458999997 9999999999999998 9999999872     22211 000000   0001122221 12      


Q ss_pred             HHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecc
Q 020104           76 FDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSS  133 (331)
Q Consensus        76 ~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS  133 (331)
                      + +.++++|+||-+++.......... +....|....+.+++.+.+...-..+|.+|.
T Consensus        67 ~-~a~~~aDiVi~avg~p~~~g~~r~-d~~~~~~~i~~~i~~~i~~~~~~~iii~~sN  122 (317)
T 2ewd_A           67 Y-ADISGSDVVIITASIPGRPKDDRS-ELLFGNARILDSVAEGVKKYCPNAFVICITN  122 (317)
T ss_dssp             G-GGGTTCSEEEECCCCSSCCSSCGG-GGHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred             H-HHhCCCCEEEEeCCCCCCCCCcHH-HHHHhhHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence            3 457889999999975442222333 5567777778888888877653335555554

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=97.65  E-value=0.00018  Score=61.43  Aligned_cols=113  Identities=16%  Similarity=0.169  Sum_probs=67.3

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGY--SVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      |||.|+|+ |.+|..++..|+..|+  +|.+++++.     +..+. ...+..........++...   +.    +.+++
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~-----~~~~~~~~~l~~~~~~~~~~~i~~~---~~----~a~~~   67 (304)
T 2v6b_A            1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDE-----DRAQAEAEDIAHAAPVSHGTRVWHG---GH----SELAD   67 (304)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSH-----HHHHHHHHHHTTSCCTTSCCEEEEE---CG----GGGTT
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCH-----HHHHHHHHhhhhhhhhcCCeEEEEC---CH----HHhCC
Confidence            48999997 9999999999999998  999999986     21111 1111111001112222221   21    35789


Q ss_pred             ccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Q 020104           83 CTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTS  132 (331)
Q Consensus        83 ~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  132 (331)
                      +|+||.+++.......... +....|+...+.+++.+.+...-..+|.+|
T Consensus        68 aDvVIi~~~~~~~~g~~r~-dl~~~n~~i~~~i~~~i~~~~p~~~vi~~t  116 (304)
T 2v6b_A           68 AQVVILTAGANQKPGESRL-DLLEKNADIFRELVPQITRAAPDAVLLVTS  116 (304)
T ss_dssp             CSEEEECC-------------CHHHHHHHHHHHHHHHHHHCSSSEEEECS
T ss_pred             CCEEEEcCCCCCCCCCcHH-HHHHhHHHHHHHHHHHHHHhCCCeEEEEec
Confidence            9999999975432222233 677889999999999988875233555443

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=97.64  E-value=8.7e-05  Score=63.53  Aligned_cols=112  Identities=12%  Similarity=0.045  Sum_probs=71.2

Q ss_pred             ceEEEecCcchhHHHHHHHHHHC--CCeEEEEecCCCCcccCCccccc-cccCC---CCCCCcEEEEeCCCCCCccHHHH
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDH--GYSVTTTVRSELDPEHRNSKDLS-FLKNL---PGASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      |||.|+|+ |.+|..++..|++.  |++|.++++++     +..+... .+...   .....++.. ..|      ..+ 
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~-----~~~~~~~~~l~~~~~~~~~~~~i~~-t~d------~~~-   66 (310)
T 1guz_A            1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVE-----GIPQGKALDMYESGPVGLFDTKVTG-SND------YAD-   66 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSS-----SHHHHHHHHHHTTHHHHTCCCEEEE-ESC------GGG-
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCh-----hHHHHHHHhHHhhhhcccCCcEEEE-CCC------HHH-
Confidence            48999998 99999999999985  79999999987     2222111 01110   000111221 122      223 


Q ss_pred             hcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Q 020104           80 IAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTS  132 (331)
Q Consensus        80 ~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  132 (331)
                      ++++|+||-+++.......... +.+..|+.....+++.+++...-..+|.+|
T Consensus        67 l~~aDvViiav~~p~~~g~~r~-dl~~~n~~i~~~i~~~i~~~~~~~~viv~t  118 (310)
T 1guz_A           67 TANSDIVIITAGLPRKPGMTRE-DLLMKNAGIVKEVTDNIMKHSKNPIIIVVS  118 (310)
T ss_dssp             GTTCSEEEECCSCCCCTTCCHH-HHHHHHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred             HCCCCEEEEeCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence            6789999999875432222233 777889999999999988875334556553

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=97.64  E-value=0.00014  Score=63.13  Aligned_cols=98  Identities=10%  Similarity=0.097  Sum_probs=58.2

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      |+||.|.||||++|+.+++.|.+++ .++.++.+..     ....++......   ..+..  ...+.+.+   + +.++
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~-----~~g~~~~~~~~~---~~g~~--~~~~~~~~---~-~~~v   69 (345)
T 2ozp_A            4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRR-----FAGEPVHFVHPN---LRGRT--NLKFVPPE---K-LEPA   69 (345)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCST-----TTTSBGGGTCGG---GTTTC--CCBCBCGG---G-CCCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECch-----hhCchhHHhCch---hcCcc--cccccchh---H-hcCC
Confidence            4689999999999999999998775 4877776644     121222111000   00000  01112222   2 4689


Q ss_pred             cEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccc
Q 020104           84 TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNA  135 (331)
Q Consensus        84 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~  135 (331)
                      |+||.+++...                 +..++..+.+.|  .++|-+|+..
T Consensus        70 DvV~~a~g~~~-----------------s~~~a~~~~~aG--~~VId~Sa~~  102 (345)
T 2ozp_A           70 DILVLALPHGV-----------------FAREFDRYSALA--PVLVDLSADF  102 (345)
T ss_dssp             SEEEECCCTTH-----------------HHHTHHHHHTTC--SEEEECSSTT
T ss_pred             CEEEEcCCcHH-----------------HHHHHHHHHHCC--CEEEEcCccc
Confidence            99998876321                 234556666777  4788888853

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=97.61  E-value=0.00032  Score=58.46  Aligned_cols=73  Identities=12%  Similarity=0.155  Sum_probs=45.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHC-CCeEEEE-ecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDH-GYSVTTT-VRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      |+||.|+|++|.+|+.+++.+.+. ++++.+. +|+.+     .. .-....++.....       ++.-..++.+++.+
T Consensus         7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~-----~~-~G~d~gel~g~~~-------gv~v~~dl~~ll~~   73 (272)
T 4f3y_A            7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGS-----PQ-LGQDAGAFLGKQT-------GVALTDDIERVCAE   73 (272)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTC-----TT-TTSBTTTTTTCCC-------SCBCBCCHHHHHHH
T ss_pred             ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCc-----cc-ccccHHHHhCCCC-------CceecCCHHHHhcC
Confidence            579999999999999999999876 5777764 55541     00 0001111111001       22223467777788


Q ss_pred             ccEEEEec
Q 020104           83 CTGVLHVA   90 (331)
Q Consensus        83 ~d~Vih~a   90 (331)
                      +|+||.+.
T Consensus        74 ~DVVIDfT   81 (272)
T 4f3y_A           74 ADYLIDFT   81 (272)
T ss_dssp             CSEEEECS
T ss_pred             CCEEEEcC
Confidence            99999875

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=97.59  E-value=0.00059  Score=58.79  Aligned_cols=113  Identities=12%  Similarity=0.016  Sum_probs=71.2

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCcccc-ccccCC---CCCCCcEEEEeCCCCCCccHHHH
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKDL-SFLKNL---PGASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      ++||.|+|| |.+|..++..|+..|+ +|.+++++..     ..+.. ..+...   .....++... .|      + +.
T Consensus        14 ~~kI~ViGa-G~vG~~iA~~la~~g~~~V~L~Di~~~-----~l~~~~~~l~~~~~~~~~~~~i~~t-~d------~-~a   79 (328)
T 2hjr_A           14 RKKISIIGA-GQIGSTIALLLGQKDLGDVYMFDIIEG-----VPQGKALDLNHCMALIGSPAKIFGE-NN------Y-EY   79 (328)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSTT-----HHHHHHHHHHHHHHHHTCCCCEEEE-SC------G-GG
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCHH-----HHHHHHHHHHhHhhccCCCCEEEEC-CC------H-HH
Confidence            368999997 9999999999999998 9999999872     22210 011000   0001223221 22      3 45


Q ss_pred             hcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Q 020104           80 IAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTS  132 (331)
Q Consensus        80 ~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  132 (331)
                      ++++|+||-+++.......... +....|+.-.+.+.+.+.+...-..++.+|
T Consensus        80 l~~aD~VI~avg~p~k~g~tr~-dl~~~n~~i~~~i~~~i~~~~p~a~viv~t  131 (328)
T 2hjr_A           80 LQNSDVVIITAGVPRKPNMTRS-DLLTVNAKIVGSVAENVGKYCPNAFVICIT  131 (328)
T ss_dssp             GTTCSEEEECCSCCCCTTCCSG-GGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred             HCCCCEEEEcCCCCCCCCCchh-hHHhhhHHHHHHHHHHHHHHCCCeEEEEec
Confidence            7899999999875431112223 566778888888888888765233555444

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=97.58  E-value=0.00038  Score=59.46  Aligned_cols=114  Identities=11%  Similarity=0.099  Sum_probs=75.2

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      |||.|+|| |.+|..++..|+..+  .++.+++++.     ++.+. ...+.........+++.. +  +    .+.+++
T Consensus         1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~-----~k~~g~a~dl~~~~~~~~~~~v~~-~--~----~~a~~~   67 (310)
T 2xxj_A            1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDR-----KLAQAHAEDILHATPFAHPVWVWA-G--S----YGDLEG   67 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSH-----HHHHHHHHHHHTTGGGSCCCEEEE-C--C----GGGGTT
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCh-----hHHHHHHHHHHHhHhhcCCeEEEE-C--C----HHHhCC
Confidence            48999998 999999999999886  6899999876     22111 111111110012333332 2  2    235789


Q ss_pred             ccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecc
Q 020104           83 CTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSS  133 (331)
Q Consensus        83 ~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS  133 (331)
                      +|+||.+++.......... +....|....+.+.+.+++...-..++.+|-
T Consensus        68 aD~Vii~ag~~~~~g~~r~-dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  117 (310)
T 2xxj_A           68 ARAVVLAAGVAQRPGETRL-QLLDRNAQVFAQVVPRVLEAAPEAVLLVATN  117 (310)
T ss_dssp             EEEEEECCCCCCCTTCCHH-HHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CCEEEECCCCCCCCCcCHH-HHHHhhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence            9999999986543223333 7788999999999999998864456666543

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=97.56  E-value=7.2e-05  Score=64.61  Aligned_cols=74  Identities=8%  Similarity=-0.009  Sum_probs=50.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh---
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI---   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~---   80 (331)
                      .+++|||+||+|.+|..+++.+...|++|++++|++     +..+..   .++.   .. .  ..|..+.+....+.   
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~-----~~~~~~---~~~g---~~-~--~~~~~~~~~~~~~~~~~  205 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTA-----QKAQSA---LKAG---AW-Q--VINYREEDLVERLKEIT  205 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSH-----HHHHHH---HHHT---CS-E--EEETTTSCHHHHHHHHT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCH-----HHHHHH---HHcC---CC-E--EEECCCccHHHHHHHHh
Confidence            357899999999999999999999999999999876     222222   2221   11 1  23555544333332   


Q ss_pred             c--CccEEEEecc
Q 020104           81 A--GCTGVLHVAT   91 (331)
Q Consensus        81 ~--~~d~Vih~a~   91 (331)
                      .  ++|+||++++
T Consensus       206 ~~~~~D~vi~~~g  218 (327)
T 1qor_A          206 GGKKVRVVYDSVG  218 (327)
T ss_dssp             TTCCEEEEEECSC
T ss_pred             CCCCceEEEECCc
Confidence            2  5999999987

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=97.54  E-value=9.5e-05  Score=64.36  Aligned_cols=74  Identities=15%  Similarity=0.144  Sum_probs=50.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccccccc-CCCCCCCcEEEEeCCCCCCccHHHHh--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLK-NLPGASERLRIFHADLSHPDGFDAAI--   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~--   80 (331)
                      .+++|||+||+|.+|..+++.+...|.+|++++|++        ++++.+. ++.     .. ...|..+.+++.+.+  
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~--------~~~~~~~~~~g-----~~-~~~d~~~~~~~~~~~~~  220 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSK--------EKVDLLKTKFG-----FD-DAFNYKEESDLTAALKR  220 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH--------HHHHHHHHTSC-----CS-EEEETTSCSCSHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH--------HHHHHHHHHcC-----Cc-eEEecCCHHHHHHHHHH
Confidence            357899999999999999999999999999999876        2223232 221     11 123555443343333  


Q ss_pred             ---cCccEEEEecc
Q 020104           81 ---AGCTGVLHVAT   91 (331)
Q Consensus        81 ---~~~d~Vih~a~   91 (331)
                         .++|+||++++
T Consensus       221 ~~~~~~d~vi~~~g  234 (345)
T 2j3h_A          221 CFPNGIDIYFENVG  234 (345)
T ss_dssp             HCTTCEEEEEESSC
T ss_pred             HhCCCCcEEEECCC
Confidence               26999999986

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=97.54  E-value=0.00035  Score=59.82  Aligned_cols=117  Identities=17%  Similarity=0.060  Sum_probs=75.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCcccCCccccccccCCCCCCCcEEEE-eCCCCCCccHHHHh
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGY--SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF-HADLSHPDGFDAAI   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~   80 (331)
                      .++||.|+|+ |.+|..++..|+..|.  +|.+++++..+.. .....+.......   ...... ..|..       .+
T Consensus        20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~-g~a~DL~~~~~~~---~~~~i~~t~d~~-------~~   87 (330)
T 3ldh_A           20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLK-GEMMDLEHGSLFL---HTAKIVSGKDYS-------VS   87 (330)
T ss_dssp             CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHH-HHHHHHHHHGGGS---CCSEEEEESSSC-------SC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHH-HHHHHhhhhhhcc---cCCeEEEcCCHH-------Hh
Confidence            4579999998 9999999999999886  8999988652100 0000111110111   111222 23432       26


Q ss_pred             cCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecc
Q 020104           81 AGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSS  133 (331)
Q Consensus        81 ~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS  133 (331)
                      +++|+||-+||.......+.. +.+..|..-.+.+.+.+.+.+.-..++.+|-
T Consensus        88 ~daDiVIitaG~p~kpG~tR~-dll~~N~~I~k~i~~~I~k~~P~a~ilvvtN  139 (330)
T 3ldh_A           88 AGSKLVVITAGARQQEGESRL-NLVQRNVNIFKFIIPNIVKHSPDCLKELHPE  139 (330)
T ss_dssp             SSCSEEEECCSCCCCSSCCTT-GGGHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CCCCEEEEeCCCCCCCCCCHH-HHHHhhHHHHHHHHHHHHhhCCCceEEeCCC
Confidence            789999999986553333444 7889999999999999998863446665553

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=97.54  E-value=8.8e-05  Score=64.26  Aligned_cols=75  Identities=16%  Similarity=0.135  Sum_probs=51.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHH---HHh
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFD---AAI   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~---~~~   80 (331)
                      .+++|||+||+|.+|..+++.+...|++|++++|++     +..+.   +.++.   ..   ...|..+.+...   +..
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~-----~~~~~---~~~~g---~~---~~~d~~~~~~~~~i~~~~  210 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTE-----EKAET---ARKLG---CH---HTINYSTQDFAEVVREIT  210 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSH-----HHHHH---HHHHT---CS---EEEETTTSCHHHHHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHH---HHHcC---CC---EEEECCCHHHHHHHHHHh
Confidence            356899999999999999999999999999999986     22222   22221   11   123555543322   332


Q ss_pred             --cCccEEEEeccc
Q 020104           81 --AGCTGVLHVATP   92 (331)
Q Consensus        81 --~~~d~Vih~a~~   92 (331)
                        .++|+||++++.
T Consensus       211 ~~~~~d~vi~~~g~  224 (333)
T 1wly_A          211 GGKGVDVVYDSIGK  224 (333)
T ss_dssp             TTCCEEEEEECSCT
T ss_pred             CCCCCeEEEECCcH
Confidence              269999999974

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=97.54  E-value=4.4e-05  Score=69.02  Aligned_cols=71  Identities=20%  Similarity=0.295  Sum_probs=57.5

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH-hcCc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA-IAGC   83 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~   83 (331)
                      .|+|+|.|+ |-+|++|++.|.+.|++|+++++++        +.++.+.+.    -++..+.||.++++.++++ ++++
T Consensus         3 ~M~iiI~G~-G~vG~~la~~L~~~~~~v~vId~d~--------~~~~~~~~~----~~~~~i~Gd~~~~~~L~~Agi~~a   69 (461)
T 4g65_A            3 AMKIIILGA-GQVGGTLAENLVGENNDITIVDKDG--------DRLRELQDK----YDLRVVNGHASHPDVLHEAGAQDA   69 (461)
T ss_dssp             CEEEEEECC-SHHHHHHHHHTCSTTEEEEEEESCH--------HHHHHHHHH----SSCEEEESCTTCHHHHHHHTTTTC
T ss_pred             cCEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCH--------HHHHHHHHh----cCcEEEEEcCCCHHHHHhcCCCcC
Confidence            478999995 9999999999999999999999987        333333221    2578899999999988887 5789


Q ss_pred             cEEEE
Q 020104           84 TGVLH   88 (331)
Q Consensus        84 d~Vih   88 (331)
                      |.+|-
T Consensus        70 d~~ia   74 (461)
T 4g65_A           70 DMLVA   74 (461)
T ss_dssp             SEEEE
T ss_pred             CEEEE
Confidence            99884

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.53  E-value=0.00017  Score=58.28  Aligned_cols=67  Identities=18%  Similarity=0.202  Sum_probs=48.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      ++|+|.|+| +|.+|+.+++.|.+.|++|++++|+.     +.   .+.+.+     .++...        ++.++++++
T Consensus        27 ~~~~I~iiG-~G~~G~~la~~l~~~g~~V~~~~r~~-----~~---~~~~~~-----~g~~~~--------~~~~~~~~~   84 (215)
T 2vns_A           27 EAPKVGILG-SGDFARSLATRLVGSGFKVVVGSRNP-----KR---TARLFP-----SAAQVT--------FQEEAVSSP   84 (215)
T ss_dssp             --CCEEEEC-CSHHHHHHHHHHHHTTCCEEEEESSH-----HH---HHHHSB-----TTSEEE--------EHHHHTTSC
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCCH-----HH---HHHHHH-----cCCcee--------cHHHHHhCC
Confidence            356899999 89999999999999999999999987     22   222211     123321        466778899


Q ss_pred             cEEEEeccc
Q 020104           84 TGVLHVATP   92 (331)
Q Consensus        84 d~Vih~a~~   92 (331)
                      |+||.+...
T Consensus        85 DvVi~av~~   93 (215)
T 2vns_A           85 EVIFVAVFR   93 (215)
T ss_dssp             SEEEECSCG
T ss_pred             CEEEECCCh
Confidence            999987653

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=97.53  E-value=4.9e-05  Score=64.15  Aligned_cols=117  Identities=10%  Similarity=0.020  Sum_probs=74.8

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      |||.|+|+ |.||+.++-.|+.++  .++.+++.+..+. ......+........  ........+  |.    +.++++
T Consensus         1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~-~G~a~DL~h~~~~~~--~~~~i~~~~--d~----~~~~~a   70 (294)
T 2x0j_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLA-VGEAMDLAHAAAGID--KYPKIVGGA--DY----SLLKGS   70 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHH-HHHHHHHHHHHGGGT--CCCEEEEES--CG----GGGTTC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcc-hhhhhhhhcccccCC--CCCeEecCC--CH----HHhCCC
Confidence            58999995 999999999998876  4899998765100 011111111100001  112222221  22    247789


Q ss_pred             cEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecc
Q 020104           84 TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSS  133 (331)
Q Consensus        84 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS  133 (331)
                      |+||-.||.......+.. +.++.|..-.+.+.+.+.+...-..++.+|-
T Consensus        71 DvVvitAG~prkpGmtR~-dLl~~Na~I~~~i~~~i~~~~p~aivlvvsN  119 (294)
T 2x0j_A           71 EIIVVTAGLARKPGMTRL-DLAHKNAGIIKDIAKKIVENAPESKILVVTN  119 (294)
T ss_dssp             SEEEECCCCCCCSSSCHH-HHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred             CEEEEecCCCCCCCCchH-HHHHHHHHHHHHHHHHHHhcCCceEEEEecC
Confidence            999999997654444555 8999999999999999999873345555543

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=97.52  E-value=0.00021  Score=62.25  Aligned_cols=97  Identities=18%  Similarity=0.249  Sum_probs=57.5

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccCCccccccccC-CCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNSKDLSFLKN-LPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      +||.|.||||++|+.+++.|.+++ .++.++.+..     +...++..... +.   ..+   ..|+.-.+  .+.+.++
T Consensus        17 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~-----~~g~~~~~~~~~~~---~~v---~~dl~~~~--~~~~~~v   83 (359)
T 1xyg_A           17 IRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADR-----KAGQSMESVFPHLR---AQK---LPTLVSVK--DADFSTV   83 (359)
T ss_dssp             EEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCST-----TTTSCHHHHCGGGT---TSC---CCCCBCGG--GCCGGGC
T ss_pred             cEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCch-----hcCCCHHHhCchhc---Ccc---cccceecc--hhHhcCC
Confidence            589999999999999999999875 4888776544     12122211100 00   000   12332111  2345689


Q ss_pred             cEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccc
Q 020104           84 TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNA  135 (331)
Q Consensus        84 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~  135 (331)
                      |+||.+.+...                 +...+..+ +.| + ++|-.|+..
T Consensus        84 DvVf~atp~~~-----------------s~~~a~~~-~aG-~-~VId~sa~~  115 (359)
T 1xyg_A           84 DAVFCCLPHGT-----------------TQEIIKEL-PTA-L-KIVDLSADF  115 (359)
T ss_dssp             SEEEECCCTTT-----------------HHHHHHTS-CTT-C-EEEECSSTT
T ss_pred             CEEEEcCCchh-----------------HHHHHHHH-hCC-C-EEEECCccc
Confidence            99998876421                 23455566 666 4 788888743

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=97.52  E-value=0.00012  Score=63.88  Aligned_cols=74  Identities=11%  Similarity=0.042  Sum_probs=50.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccH---HHHh
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGF---DAAI   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~---~~~~   80 (331)
                      .+++|||+||+|.+|..+++.+...|++|++++|++     +.   ++.+.++.     .. ...|..+.+..   .+..
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~-----~~---~~~~~~~g-----a~-~~~d~~~~~~~~~~~~~~  235 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTE-----EG---QKIVLQNG-----AH-EVFNHREVNYIDKIKKYV  235 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH-----HH---HHHHHHTT-----CS-EEEETTSTTHHHHHHHHH
T ss_pred             CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCh-----hH---HHHHHHcC-----CC-EEEeCCCchHHHHHHHHc
Confidence            357899999999999999999999999999999887     22   22222221     11 12355444322   2333


Q ss_pred             c--CccEEEEecc
Q 020104           81 A--GCTGVLHVAT   91 (331)
Q Consensus        81 ~--~~d~Vih~a~   91 (331)
                      .  ++|+||++++
T Consensus       236 ~~~~~D~vi~~~G  248 (351)
T 1yb5_A          236 GEKGIDIIIEMLA  248 (351)
T ss_dssp             CTTCEEEEEESCH
T ss_pred             CCCCcEEEEECCC
Confidence            2  6999999987

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=97.50  E-value=0.00064  Score=59.12  Aligned_cols=178  Identities=11%  Similarity=-0.009  Sum_probs=98.6

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC--e---EEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY--S---VTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~--~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      .+||.|+||+|.||++++-.|+..+.  +   +.+...+.+............+....  .+-...+..  .  ....+.
T Consensus        32 ~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~--~p~~~~v~i--~--~~~y~~  105 (375)
T 7mdh_A           32 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSL--YPLLREVSI--G--IDPYEV  105 (375)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTT--CTTEEEEEE--E--SCHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhh--hhhcCCcEE--e--cCCHHH
Confidence            46899999999999999999988752  2   66655443100000001111111111  011111111  1  124677


Q ss_pred             hcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhc-CCccEEEEecccceeecCCCCCCcccCCCCCChhhh
Q 020104           80 IAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKS-GTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYI  158 (331)
Q Consensus        80 ~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~  158 (331)
                      ++++|+||-.||.......+.. +.++.|..-.+.+.+++.+. +.-..++.+|...-..    ....+...        
T Consensus       106 ~~daDvVVitag~prkpG~tR~-DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD~~----t~ia~k~s--------  172 (375)
T 7mdh_A          106 FEDVDWALLIGAKPRGPGMERA-ALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTN----ALICLKNA--------  172 (375)
T ss_dssp             TTTCSEEEECCCCCCCTTCCHH-HHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHH----HHHHHHTC--------
T ss_pred             hCCCCEEEEcCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhHH----HHHHHHHc--------
Confidence            8899999999986543334455 89999999999999999885 4234666666421000    00000000        


Q ss_pred             hhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCC
Q 020104          159 RKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPF  202 (331)
Q Consensus       159 ~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~  202 (331)
                       +..++...-+.+-+..-++-...+++.+++..-++--.|+|..
T Consensus       173 -g~~~~rvig~gT~LDsaR~r~~lA~~lgv~~~~V~~v~V~GeH  215 (375)
T 7mdh_A          173 -PDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNH  215 (375)
T ss_dssp             -TTSCGGGEEECCHHHHHHHHHHHHHHTTSCGGGEECCEEEBCS
T ss_pred             -CCCCccEEEeeehHHHHHHHHHHHHHhCcChhhcccceEEecC
Confidence             0112233344455666666666777777765555544677754

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.48  E-value=9e-05  Score=65.96  Aligned_cols=73  Identities=18%  Similarity=0.210  Sum_probs=58.6

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH-hcCc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA-IAGC   83 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~   83 (331)
                      .++|+|+|. |-+|+.+++.|.+.|++|+++++++        +..+.+..     .++.++.||.++++.+.++ +.++
T Consensus         4 ~~~viIiG~-Gr~G~~va~~L~~~g~~vvvId~d~--------~~v~~~~~-----~g~~vi~GDat~~~~L~~agi~~A   69 (413)
T 3l9w_A            4 GMRVIIAGF-GRFGQITGRLLLSSGVKMVVLDHDP--------DHIETLRK-----FGMKVFYGDATRMDLLESAGAAKA   69 (413)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEECCH--------HHHHHHHH-----TTCCCEESCTTCHHHHHHTTTTTC
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHCCCCEEEEECCH--------HHHHHHHh-----CCCeEEEcCCCCHHHHHhcCCCcc
Confidence            468999995 9999999999999999999999988        22222222     3577899999999988877 6789


Q ss_pred             cEEEEecc
Q 020104           84 TGVLHVAT   91 (331)
Q Consensus        84 d~Vih~a~   91 (331)
                      |+||-+..
T Consensus        70 ~~viv~~~   77 (413)
T 3l9w_A           70 EVLINAID   77 (413)
T ss_dssp             SEEEECCS
T ss_pred             CEEEECCC
Confidence            99986653

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=97.47  E-value=0.00013  Score=63.82  Aligned_cols=75  Identities=15%  Similarity=0.025  Sum_probs=51.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHH---Hh
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDA---AI   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~---~~   80 (331)
                      .+++|||+||+|.+|..+++.+...|++|++++|++     +..+.   ++++.     .. ...|..+.+....   ..
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~-----~~~~~---~~~~g-----~~-~~~~~~~~~~~~~~~~~~  227 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQ-----KKLQM---AEKLG-----AA-AGFNYKKEDFSEATLKFT  227 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHH---HHHHT-----CS-EEEETTTSCHHHHHHHHT
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCH-----HHHHH---HHHcC-----Cc-EEEecCChHHHHHHHHHh
Confidence            356899999999999999999999999999999886     22222   22221     11 1235544433332   22


Q ss_pred             c--CccEEEEeccc
Q 020104           81 A--GCTGVLHVATP   92 (331)
Q Consensus        81 ~--~~d~Vih~a~~   92 (331)
                      .  ++|+||++++.
T Consensus       228 ~~~~~d~vi~~~G~  241 (354)
T 2j8z_A          228 KGAGVNLILDCIGG  241 (354)
T ss_dssp             TTSCEEEEEESSCG
T ss_pred             cCCCceEEEECCCc
Confidence            2  69999999974

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=97.42  E-value=0.00021  Score=62.54  Aligned_cols=72  Identities=13%  Similarity=0.039  Sum_probs=49.2

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCccccccccC-CCCCCCcEEEEeCCCCCCccHHHHh---
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKDLSFLKN-LPGASERLRIFHADLSHPDGFDAAI---   80 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~---   80 (331)
                      ++|||+||+|.||..+++.+...|+ +|++++++.        +++..+.+ +.     .. ...|..+.+....+.   
T Consensus       162 ~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~--------~~~~~~~~~~g-----~~-~~~d~~~~~~~~~~~~~~  227 (357)
T 2zb4_A          162 KTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTH--------EKCILLTSELG-----FD-AAINYKKDNVAEQLRESC  227 (357)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCH--------HHHHHHHHTSC-----CS-EEEETTTSCHHHHHHHHC
T ss_pred             cEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCH--------HHHHHHHHHcC-----Cc-eEEecCchHHHHHHHHhc
Confidence            7899999999999999999999999 999999876        22222221 21     11 123555543222222   


Q ss_pred             c-CccEEEEecc
Q 020104           81 A-GCTGVLHVAT   91 (331)
Q Consensus        81 ~-~~d~Vih~a~   91 (331)
                      . ++|+||++++
T Consensus       228 ~~~~d~vi~~~G  239 (357)
T 2zb4_A          228 PAGVDVYFDNVG  239 (357)
T ss_dssp             TTCEEEEEESCC
T ss_pred             CCCCCEEEECCC
Confidence            2 5999999987

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=97.37  E-value=0.00044  Score=60.30  Aligned_cols=36  Identities=33%  Similarity=0.418  Sum_probs=29.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~   39 (331)
                      |++||.|.||||++|+.+++.|.+++ .+|.++.+++
T Consensus         7 M~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~   43 (354)
T 1ys4_A            7 MKIKVGVLGATGSVGQRFVQLLADHPMFELTALAASE   43 (354)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECT
T ss_pred             ccceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEccc
Confidence            34689999999999999999998764 6888887643

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=97.37  E-value=0.00023  Score=61.67  Aligned_cols=74  Identities=16%  Similarity=0.113  Sum_probs=50.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccc-cCCCCCCCcEEEEeCCCCCCccHHHHh--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFL-KNLPGASERLRIFHADLSHPDGFDAAI--   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~~~~~~~~~~--   80 (331)
                      .+++|||+||+|-||..+++.+...|.+|++++|++        ++++.+ +++.     .. ...|..+.+....+.  
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~--------~~~~~~~~~~g-----~~-~~~~~~~~~~~~~~~~~  214 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGA--------EKCRFLVEELG-----FD-GAIDYKNEDLAAGLKRE  214 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH--------HHHHHHHHTTC-----CS-EEEETTTSCHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH--------HHHHHHHHHcC-----CC-EEEECCCHHHHHHHHHh
Confidence            457899999999999999999999999999999887        233333 2321     11 113444443222222  


Q ss_pred             --cCccEEEEecc
Q 020104           81 --AGCTGVLHVAT   91 (331)
Q Consensus        81 --~~~d~Vih~a~   91 (331)
                        .++|+||++++
T Consensus       215 ~~~~~d~vi~~~g  227 (336)
T 4b7c_A          215 CPKGIDVFFDNVG  227 (336)
T ss_dssp             CTTCEEEEEESSC
T ss_pred             cCCCceEEEECCC
Confidence              26999999887

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=97.37  E-value=0.0021  Score=55.86  Aligned_cols=94  Identities=22%  Similarity=0.232  Sum_probs=54.4

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC---eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY---SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      ++||.|.||||++|+.|++.|.++++   ++..+.-+.     +....+. +.   .  ....+...|   .+    .++
T Consensus         2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~-----saG~~~~-~~---~--~~~~~~~~~---~~----~~~   63 (366)
T 3pwk_A            2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASAR-----SAGKSLK-FK---D--QDITIEETT---ET----AFE   63 (366)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTT-----TTTCEEE-ET---T--EEEEEEECC---TT----TTT
T ss_pred             CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccc-----cCCCcce-ec---C--CCceEeeCC---HH----Hhc
Confidence            57999999999999999998888755   334433222     1111111 10   0  112222222   11    246


Q ss_pred             CccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccc
Q 020104           82 GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNA  135 (331)
Q Consensus        82 ~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~  135 (331)
                      ++|+||-+++..                 .+..++..+.+.| + ++|=.|+..
T Consensus        64 ~~Dvvf~a~~~~-----------------~s~~~a~~~~~~G-~-~vIDlSa~~   98 (366)
T 3pwk_A           64 GVDIALFSAGSS-----------------TSAKYAPYAVKAG-V-VVVDNTSYF   98 (366)
T ss_dssp             TCSEEEECSCHH-----------------HHHHHHHHHHHTT-C-EEEECSSTT
T ss_pred             CCCEEEECCChH-----------------hHHHHHHHHHHCC-C-EEEEcCCcc
Confidence            899999877521                 1234555556667 4 788888753

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=97.34  E-value=0.00043  Score=58.88  Aligned_cols=36  Identities=19%  Similarity=0.411  Sum_probs=32.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      ++++|.|+||+|.+|+.++..|.+.|++|.+++|++
T Consensus        20 ~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~   55 (298)
T 2pv7_A           20 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   55 (298)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence            456899999999999999999999999999998876

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=97.34  E-value=0.00011  Score=64.03  Aligned_cols=83  Identities=18%  Similarity=0.142  Sum_probs=50.2

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |+.++|+|.|+|+ |.+|..++..|++.|++|.+.+|++     +..+.+..........+++.+ ...+.-..++.+++
T Consensus        25 m~~~~mkI~VIGa-G~mG~alA~~La~~G~~V~l~~r~~-----~~~~~i~~~~~~~~~l~g~~l-~~~i~~t~d~~ea~   97 (356)
T 3k96_A           25 MEPFKHPIAILGA-GSWGTALALVLARKGQKVRLWSYES-----DHVDEMQAEGVNNRYLPNYPF-PETLKAYCDLKASL   97 (356)
T ss_dssp             --CCCSCEEEECC-SHHHHHHHHHHHTTTCCEEEECSCH-----HHHHHHHHHSSBTTTBTTCCC-CTTEEEESCHHHHH
T ss_pred             ccccCCeEEEECc-cHHHHHHHHHHHHCCCeEEEEeCCH-----HHHHHHHHcCCCcccCCCCcc-CCCeEEECCHHHHH
Confidence            4555679999995 9999999999999999999999986     222222211110000111110 00111113566788


Q ss_pred             cCccEEEEec
Q 020104           81 AGCTGVLHVA   90 (331)
Q Consensus        81 ~~~d~Vih~a   90 (331)
                      +++|+||-+.
T Consensus        98 ~~aDvVilaV  107 (356)
T 3k96_A           98 EGVTDILIVV  107 (356)
T ss_dssp             TTCCEEEECC
T ss_pred             hcCCEEEECC
Confidence            8999999654

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=97.33  E-value=0.0011  Score=56.96  Aligned_cols=106  Identities=14%  Similarity=0.135  Sum_probs=67.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCcccCCcc--ccccccCCCCCCCcEEEEeCCCCCCccHHHH
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGY--SVTTTVRSELDPEHRNSK--DLSFLKNLPGASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      ++|||.|+|+ |.+|..++..|++.|+  +|.+++|+.     +..+  .+....... ......+...  .+.    +.
T Consensus         6 ~~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~-----~~~~~~~~~~~~~~~-~~~~~~v~~~--~~~----~~   72 (319)
T 1lld_A            6 KPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAK-----ERVEAEVLDMQHGSS-FYPTVSIDGS--DDP----EI   72 (319)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSH-----HHHHHHHHHHHHTGG-GSTTCEEEEE--SCG----GG
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCh-----hHHHHHHHHHHhhhh-hcCCeEEEeC--CCH----HH
Confidence            4579999997 9999999999999998  999999976     2211  111000010 0011222211  122    24


Q ss_pred             hcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcC
Q 020104           80 IAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSG  123 (331)
Q Consensus        80 ~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~  123 (331)
                      ++++|+||-+++.......+.. +....|......+++.+++.+
T Consensus        73 ~~~aD~Vii~v~~~~~~g~~r~-~~~~~n~~~~~~~~~~i~~~~  115 (319)
T 1lld_A           73 CRDADMVVITAGPRQKPGQSRL-ELVGATVNILKAIMPNLVKVA  115 (319)
T ss_dssp             GTTCSEEEECCCCCCCTTCCHH-HHHHHHHHHHHHHHHHHHHHC
T ss_pred             hCCCCEEEECCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHhC
Confidence            6789999999875442223333 677888888888888887764

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=97.33  E-value=0.00026  Score=63.79  Aligned_cols=80  Identities=13%  Similarity=0.157  Sum_probs=49.9

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEE-EE-----eCCCCCCccHHHH
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLR-IF-----HADLSHPDGFDAA   79 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~D~~~~~~~~~~   79 (331)
                      |+|.|+| +|++|..++..|++.|++|++++|++     +..+.+..- ..+...++++ .+     .+.+.-..++.++
T Consensus         3 mkI~VIG-~G~vG~~lA~~La~~G~~V~~~D~~~-----~~v~~l~~g-~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea   75 (450)
T 3gg2_A            3 LDIAVVG-IGYVGLVSATCFAELGANVRCIDTDR-----NKIEQLNSG-TIPIYEPGLEKMIARNVKAGRLRFGTEIEQA   75 (450)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCH-----HHHHHHHHT-CSCCCSTTHHHHHHHHHHTTSEEEESCHHHH
T ss_pred             CEEEEEC-cCHHHHHHHHHHHhcCCEEEEEECCH-----HHHHHHHcC-CCcccCCCHHHHHHhhcccCcEEEECCHHHH
Confidence            6999999 59999999999999999999999987     222222210 0000001100 00     0111112346677


Q ss_pred             hcCccEEEEeccc
Q 020104           80 IAGCTGVLHVATP   92 (331)
Q Consensus        80 ~~~~d~Vih~a~~   92 (331)
                      ++++|+||-+.+.
T Consensus        76 ~~~aDvViiaVpt   88 (450)
T 3gg2_A           76 VPEADIIFIAVGT   88 (450)
T ss_dssp             GGGCSEEEECCCC
T ss_pred             HhcCCEEEEEcCC
Confidence            8889999988754

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=97.32  E-value=0.0007  Score=57.86  Aligned_cols=112  Identities=13%  Similarity=0.099  Sum_probs=68.7

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCccccc-ccc-CCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKDLS-FLK-NLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      |||.|+| +|.+|..++..|++.|  ++|.+++|+.     +..+.+. .+. ........+.....|      . +.++
T Consensus         2 ~kI~VIG-aG~~G~~la~~L~~~g~~~~V~l~d~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~d------~-~~~~   68 (309)
T 1hyh_A            2 RKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANE-----AKVKADQIDFQDAMANLEAHGNIVIND------W-AALA   68 (309)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSH-----HHHHHHHHHHHHHGGGSSSCCEEEESC------G-GGGT
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEcCCH-----HHHHHHHHHHHhhhhhcCCCeEEEeCC------H-HHhC
Confidence            6899999 7999999999999998  8999999986     2222211 110 000000123332222      2 3567


Q ss_pred             CccEEEEecccCCC----CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEe
Q 020104           82 GCTGVLHVATPVDF----EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYT  131 (331)
Q Consensus        82 ~~d~Vih~a~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~  131 (331)
                      ++|+||-+++....    ...... +....|+.....+++.+.+...-..+|.+
T Consensus        69 ~aDvViiav~~~~~~~~~~g~~r~-~l~~~n~~i~~~i~~~i~~~~~~~~ii~~  121 (309)
T 1hyh_A           69 DADVVISTLGNIKLQQDNPTGDRF-AELKFTSSMVQSVGTNLKESGFHGVLVVI  121 (309)
T ss_dssp             TCSEEEECCSCGGGTC-------C-TTHHHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred             CCCEEEEecCCcccCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHCCCcEEEEE
Confidence            89999998875331    111222 56778888888898888876522344543

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.29  E-value=5.9e-05  Score=56.75  Aligned_cols=71  Identities=14%  Similarity=0.193  Sum_probs=50.3

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      .++|+|+|+ |.+|+.+++.|.+.|++|.+.+|+.     +..+.+..  +.     +...     ...+++.++++++|
T Consensus        21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~v~v~~r~~-----~~~~~~a~--~~-----~~~~-----~~~~~~~~~~~~~D   82 (144)
T 3oj0_A           21 GNKILLVGN-GMLASEIAPYFSYPQYKVTVAGRNI-----DHVRAFAE--KY-----EYEY-----VLINDIDSLIKNND   82 (144)
T ss_dssp             CCEEEEECC-SHHHHHHGGGCCTTTCEEEEEESCH-----HHHHHHHH--HH-----TCEE-----EECSCHHHHHHTCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCH-----HHHHHHHH--Hh-----CCce-----EeecCHHHHhcCCC
Confidence            578999995 9999999999999999999999987     22222111  11     1121     12345677888999


Q ss_pred             EEEEecccC
Q 020104           85 GVLHVATPV   93 (331)
Q Consensus        85 ~Vih~a~~~   93 (331)
                      +||.+.+..
T Consensus        83 ivi~at~~~   91 (144)
T 3oj0_A           83 VIITATSSK   91 (144)
T ss_dssp             EEEECSCCS
T ss_pred             EEEEeCCCC
Confidence            999987653

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.26  E-value=0.00027  Score=59.19  Aligned_cols=74  Identities=15%  Similarity=0.215  Sum_probs=48.3

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+++++|+|+ |.+|+.++..|++.|.+|++++|+.     ++.+.+..  ++... ..+.  ..|+   +++.+  .++
T Consensus       118 ~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~~-----~~~~~la~--~~~~~-~~~~--~~~~---~~~~~--~~~  181 (271)
T 1nyt_A          118 PGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTV-----SRAEELAK--LFAHT-GSIQ--ALSM---DELEG--HEF  181 (271)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSH-----HHHHHHHH--HTGGG-SSEE--ECCS---GGGTT--CCC
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECCH-----HHHHHHHH--Hhhcc-CCee--EecH---HHhcc--CCC
Confidence            3578999998 7799999999999999999999987     22222211  11000 1222  1232   22322  579


Q ss_pred             cEEEEecccC
Q 020104           84 TGVLHVATPV   93 (331)
Q Consensus        84 d~Vih~a~~~   93 (331)
                      |+||++++..
T Consensus       182 DivVn~t~~~  191 (271)
T 1nyt_A          182 DLIINATSSG  191 (271)
T ss_dssp             SEEEECCSCG
T ss_pred             CEEEECCCCC
Confidence            9999999753

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=97.25  E-value=0.0011  Score=56.78  Aligned_cols=113  Identities=15%  Similarity=0.113  Sum_probs=71.2

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCcccCCccccc-cccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGY--SVTTTVRSELDPEHRNSKDLS-FLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      |||.|+|+ |.+|..++..|++.|+  +|.+++|++     +..+... .+...........+...   |.    +.+++
T Consensus         1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~-----~~~~~~~~~l~~~~~~~~~~~i~~~---d~----~~~~~   67 (319)
T 1a5z_A            1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDK-----KRAEGDALDLIHGTPFTRRANIYAG---DY----ADLKG   67 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSH-----HHHHHHHHHHHHHGGGSCCCEEEEC---CG----GGGTT
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCCh-----HHHHHHHHHHHhhhhhcCCcEEEeC---CH----HHhCC
Confidence            48999997 9999999999999998  999999986     2222111 00000000011222221   22    24678


Q ss_pred             ccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Q 020104           83 CTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTS  132 (331)
Q Consensus        83 ~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  132 (331)
                      +|+||-+++.......... +....|+...+.+++.+.+...-..+|.+|
T Consensus        68 aDvViiav~~~~~~g~~r~-dl~~~n~~i~~~i~~~i~~~~~~~~ii~~t  116 (319)
T 1a5z_A           68 SDVVIVAAGVPQKPGETRL-QLLGRNARVMKEIARNVSKYAPDSIVIVVT  116 (319)
T ss_dssp             CSEEEECCCCCCCSSCCHH-HHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             CCEEEEccCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHhhCCCeEEEEeC
Confidence            9999999875442222233 677888888999999988765233555543

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=97.24  E-value=0.0017  Score=56.07  Aligned_cols=94  Identities=14%  Similarity=0.114  Sum_probs=56.6

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC---CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG---YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      |+||.|.||||++|+.+++.|.+++   .++.++....     .....+. +.     ...+.+.  |. +++    .+.
T Consensus         3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~-----~~G~~~~-~~-----~~~i~~~--~~-~~~----~~~   64 (336)
T 2r00_A            3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASER-----SEGKTYR-FN-----GKTVRVQ--NV-EEF----DWS   64 (336)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTT-----TTTCEEE-ET-----TEEEEEE--EG-GGC----CGG
T ss_pred             ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCC-----CCCCcee-ec-----CceeEEe--cC-ChH----Hhc
Confidence            5799999999999999999999873   4666665322     1111111 10     0122222  22 122    235


Q ss_pred             CccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccc
Q 020104           82 GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNA  135 (331)
Q Consensus        82 ~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~  135 (331)
                      ++|+||-+.+..                 .+...+..+.+.| + ++|-.|+..
T Consensus        65 ~vDvVf~a~g~~-----------------~s~~~a~~~~~~G-~-~vId~s~~~   99 (336)
T 2r00_A           65 QVHIALFSAGGE-----------------LSAKWAPIAAEAG-V-VVIDNTSHF   99 (336)
T ss_dssp             GCSEEEECSCHH-----------------HHHHHHHHHHHTT-C-EEEECSSTT
T ss_pred             CCCEEEECCCch-----------------HHHHHHHHHHHcC-C-EEEEcCCcc
Confidence            899999876531                 1345566666777 4 788888753

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=97.22  E-value=0.003  Score=53.63  Aligned_cols=111  Identities=14%  Similarity=0.133  Sum_probs=72.2

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY--SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      ++||.|+|| |.+|..++..|+..|.  +|.+++++..  .......+..   ..  .+++... .|      + +.+++
T Consensus        14 ~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~--~~g~a~dl~~---~~--~~~i~~t-~d------~-~~l~~   77 (303)
T 2i6t_A           14 VNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEG--TKGATMDLEI---FN--LPNVEIS-KD------L-SASAH   77 (303)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC-------CHHHHHH---HT--CTTEEEE-SC------G-GGGTT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcc--hHHHHHHHhh---hc--CCCeEEe-CC------H-HHHCC
Confidence            578999996 9999999999999988  9999998872  1111111111   11  1244442 22      3 45789


Q ss_pred             ccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecc
Q 020104           83 CTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSS  133 (331)
Q Consensus        83 ~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS  133 (331)
                      +|+||-+++.... ..... +....|+.-.+.+++.+.+...-..++.+|-
T Consensus        78 aD~Vi~aag~~~p-G~tR~-dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sN  126 (303)
T 2i6t_A           78 SKVVIFTVNSLGS-SQSYL-DVVQSNVDMFRALVPALGHYSQHSVLLVASQ  126 (303)
T ss_dssp             CSEEEECCCC-----CCHH-HHHHHHHHHHHHHHHHHHHHTTTCEEEECSS
T ss_pred             CCEEEEcCCCCCC-CCCHH-HHHHHHHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence            9999999986422 22333 7788899999999999988753345555554

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=97.21  E-value=0.0021  Score=53.79  Aligned_cols=74  Identities=23%  Similarity=0.287  Sum_probs=44.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHC-CCeEEEE-ecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDH-GYSVTTT-VRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      ++||.|.|++|-+|+.+++.+.+. +.++.+. +|+.+..   .......+   .+    +.  ..++.-..++.+++.+
T Consensus        21 ~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~---~G~d~gel---~G----~~--~~gv~v~~dl~~ll~~   88 (288)
T 3ijp_A           21 SMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSF---VDKDASIL---IG----SD--FLGVRITDDPESAFSN   88 (288)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTT---TTSBGGGG---TT----CS--CCSCBCBSCHHHHTTS
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc---cccchHHh---hc----cC--cCCceeeCCHHHHhcC
Confidence            468999999999999999998865 6787665 4543100   00111111   00    00  1122222467778889


Q ss_pred             ccEEEEec
Q 020104           83 CTGVLHVA   90 (331)
Q Consensus        83 ~d~Vih~a   90 (331)
                      +|+||.+.
T Consensus        89 aDVvIDFT   96 (288)
T 3ijp_A           89 TEGILDFS   96 (288)
T ss_dssp             CSEEEECS
T ss_pred             CCEEEEcC
Confidence            99999765

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=97.21  E-value=0.00028  Score=61.35  Aligned_cols=74  Identities=20%  Similarity=0.147  Sum_probs=50.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCc---cHHHHh
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPD---GFDAAI   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~---~~~~~~   80 (331)
                      .+++|||+||+|.+|..+++.+...|++|++++|++     +..+.   +.++.     ... ..|..+.+   .+.++.
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~-----~~~~~---~~~~g-----a~~-~~d~~~~~~~~~~~~~~  231 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSE-----DKLRR---AKALG-----ADE-TVNYTHPDWPKEVRRLT  231 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSH-----HHHHH---HHHHT-----CSE-EEETTSTTHHHHHHHHT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH-----HHHHH---HHhcC-----CCE-EEcCCcccHHHHHHHHh
Confidence            356899999999999999999999999999999977     22222   22221     111 13555443   233333


Q ss_pred             c--CccEEEEecc
Q 020104           81 A--GCTGVLHVAT   91 (331)
Q Consensus        81 ~--~~d~Vih~a~   91 (331)
                      .  ++|+||++++
T Consensus       232 ~~~~~d~vi~~~g  244 (343)
T 2eih_A          232 GGKGADKVVDHTG  244 (343)
T ss_dssp             TTTCEEEEEESSC
T ss_pred             CCCCceEEEECCC
Confidence            2  6999999988

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=97.19  E-value=0.0033  Score=51.52  Aligned_cols=71  Identities=17%  Similarity=0.269  Sum_probs=46.7

Q ss_pred             ceEEEecCcchhHHHHHHHHHHC-CCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDH-GYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      |||.|+|++|-+|+.+++.+.+. +++|.+.....     ...+.+.   .     .... +..|++.++...+.+.   
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~-----~dl~~~~---~-----~~~D-vvIDfT~p~a~~~~~~~a~   66 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG-----DPLSLLT---D-----GNTE-VVIDFTHPDVVMGNLEFLI   66 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT-----CCTHHHH---H-----TTCC-EEEECSCTTTHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC-----CCHHHHh---c-----cCCc-EEEEccChHHHHHHHHHHH
Confidence            48999999999999999999876 89988766543     1111111   0     0112 5567777776665442   


Q ss_pred             --CccEEEEec
Q 020104           82 --GCTGVLHVA   90 (331)
Q Consensus        82 --~~d~Vih~a   90 (331)
                        ++++|+-..
T Consensus        67 ~~g~~~VigTT   77 (245)
T 1p9l_A           67 DNGIHAVVGTT   77 (245)
T ss_dssp             HTTCEEEECCC
T ss_pred             HcCCCEEEcCC
Confidence              678877433

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.17  E-value=0.00018  Score=61.20  Aligned_cols=82  Identities=12%  Similarity=0.080  Sum_probs=51.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCccccccccC-CCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKDLSFLKN-LPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      ..++++|+|+ |..|+.++..|.+.|. +|+++.|+.     +..++.+.+.+ +... .+......++.+.+.+.+.+.
T Consensus       147 ~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~-----~~~~~a~~la~~~~~~-~~~~v~~~~~~~l~~~~~~l~  219 (312)
T 3t4e_A          147 RGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKD-----DFFEKAVAFAKRVNEN-TDCVVTVTDLADQHAFTEALA  219 (312)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSS-----THHHHHHHHHHHHHHH-SSCEEEEEETTCHHHHHHHHH
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCC-----chHHHHHHHHHHhhhc-cCcceEEechHhhhhhHhhcc
Confidence            3578999996 8899999999999997 899999984     11122222211 0000 112222334444333456677


Q ss_pred             CccEEEEeccc
Q 020104           82 GCTGVLHVATP   92 (331)
Q Consensus        82 ~~d~Vih~a~~   92 (331)
                      ++|+|||+.+.
T Consensus       220 ~~DiIINaTp~  230 (312)
T 3t4e_A          220 SADILTNGTKV  230 (312)
T ss_dssp             HCSEEEECSST
T ss_pred             CceEEEECCcC
Confidence            89999998753

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=97.16  E-value=0.00022  Score=61.07  Aligned_cols=35  Identities=23%  Similarity=0.267  Sum_probs=31.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      +||+|.|+|+ |.+|+.++..|.+.|++|++++|++
T Consensus         2 ~~m~i~iiG~-G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            2 NAMKIAIAGA-GAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhCCCcEEEEECCH
Confidence            3579999995 9999999999999999999999976

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=97.16  E-value=0.00046  Score=60.24  Aligned_cols=75  Identities=20%  Similarity=0.124  Sum_probs=50.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh---
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI---   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~---   80 (331)
                      .+++|||+||+|-+|...++.+...|.+|++++|++     ++   ++.++++..   . ..  .|..+.+....+.   
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~-----~~---~~~~~~lGa---~-~~--~~~~~~~~~~~~~~~~  232 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGST-----GK---CEACERLGA---K-RG--INYRSEDFAAVIKAET  232 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH-----HH---HHHHHHHTC---S-EE--EETTTSCHHHHHHHHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCH-----HH---HHHHHhcCC---C-EE--EeCCchHHHHHHHHHh
Confidence            356899999999999999999999999999999887     22   222222211   1 11  2444433222222   


Q ss_pred             -cCccEEEEeccc
Q 020104           81 -AGCTGVLHVATP   92 (331)
Q Consensus        81 -~~~d~Vih~a~~   92 (331)
                       .++|+||++++.
T Consensus       233 ~~g~Dvvid~~g~  245 (353)
T 4dup_A          233 GQGVDIILDMIGA  245 (353)
T ss_dssp             SSCEEEEEESCCG
T ss_pred             CCCceEEEECCCH
Confidence             269999999874

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=97.14  E-value=0.00064  Score=58.78  Aligned_cols=75  Identities=13%  Similarity=0.094  Sum_probs=50.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCc---cHHHHh
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPD---GFDAAI   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~---~~~~~~   80 (331)
                      .+++|||+||+|.+|...++.+...|.+|+++++++        ++++.++++..   . ..  .|..+.+   .+.+..
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~--------~~~~~~~~~ga---~-~~--~~~~~~~~~~~~~~~~  213 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTD--------EKLKIAKEYGA---E-YL--INASKEDILRQVLKFT  213 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSH--------HHHHHHHHTTC---S-EE--EETTTSCHHHHHHHHT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH--------HHHHHHHHcCC---c-EE--EeCCCchHHHHHHHHh
Confidence            357899999999999999999999999999999976        23333333211   1 12  2333333   222332


Q ss_pred             --cCccEEEEeccc
Q 020104           81 --AGCTGVLHVATP   92 (331)
Q Consensus        81 --~~~d~Vih~a~~   92 (331)
                        .++|+||++++.
T Consensus       214 ~~~g~D~vid~~g~  227 (334)
T 3qwb_A          214 NGKGVDASFDSVGK  227 (334)
T ss_dssp             TTSCEEEEEECCGG
T ss_pred             CCCCceEEEECCCh
Confidence              269999999874

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=97.14  E-value=0.00043  Score=59.06  Aligned_cols=165  Identities=14%  Similarity=0.117  Sum_probs=94.5

Q ss_pred             eEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCccc-cccccCCC-CCCCcEEEEe-CCCCCCccHHHHhcC
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKD-LSFLKNLP-GASERLRIFH-ADLSHPDGFDAAIAG   82 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~-~D~~~~~~~~~~~~~   82 (331)
                      ||.|+|| |.+|..++..|+..+. +|.+++++..     ..+. ...+.... ......++.. .|      . +.+++
T Consensus         1 KI~IiGa-G~vG~~~a~~l~~~~l~el~L~Di~~~-----~~~g~~~dl~~~~~~~~~~~~i~~t~d------~-~a~~~   67 (308)
T 2d4a_B            1 MITILGA-GKVGMATAVMLMMRGYDDLLLIARTPG-----KPQGEALDLAHAAAELGVDIRISGSNS------Y-EDMRG   67 (308)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTCSCEEEECSSTT-----HHHHHHHHHHHHHHHHTCCCCEEEESC------G-GGGTT
T ss_pred             CEEEECc-CHHHHHHHHHHHhCCCCEEEEEcCChh-----hHHHHHHHHHHhhhhcCCCeEEEECCC------H-HHhCC
Confidence            5899998 9999999999988887 7999998862     1111 11111100 0001222222 22      2 36789


Q ss_pred             ccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhh-hc
Q 020104           83 CTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIR-KL  161 (331)
Q Consensus        83 ~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~-~~  161 (331)
                      +|+||-.++.......... +....|+.-.+.+++.+.+...-..+|.+|-..-.            -+.   .... ..
T Consensus        68 aD~Vi~~ag~~~k~G~~r~-dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~------------~t~---~~~k~~~  131 (308)
T 2d4a_B           68 SDIVLVTAGIGRKPGMTRE-QLLEANANTMADLAEKIKAYAKDAIVVITTNPVDA------------MTY---VMYKKTG  131 (308)
T ss_dssp             CSEEEECCSCCCCSSCCTH-HHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHH------------HHH---HHHHHHC
T ss_pred             CCEEEEeCCCCCCCCCcHH-HHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHH------------HHH---HHHHhcC
Confidence            9999999986543223333 77889999999999999887534466665431100            000   0000 00


Q ss_pred             CCCCchhHh-hHHHHHHHHHHHHHHcCCcEEEeccCceeCC
Q 020104          162 DSWGKSYAI-SKTLTERAALEFAEEHGLDLVTLIPSMVVGP  201 (331)
Q Consensus       162 ~~~~~~Y~~-~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~  201 (331)
                      .+|....|. +-+..-++....++..+++..-++. .++|.
T Consensus       132 ~p~~rviG~gt~LD~~R~~~~la~~lgv~~~~v~~-~v~G~  171 (308)
T 2d4a_B          132 FPRERVIGFSGILDSARMAYYISQKLGVSFKSVNA-IVLGM  171 (308)
T ss_dssp             CCGGGEEECCHHHHHHHHHHHHHHHHTSCGGGEEC-CEEBC
T ss_pred             CChhhEEEecccchHHHHHHHHHHHhCcChhHeEE-EEEec
Confidence            123344555 4444555555566666765554554 36774

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=97.12  E-value=0.0036  Score=46.42  Aligned_cols=35  Identities=14%  Similarity=0.294  Sum_probs=29.5

Q ss_pred             CceEEEecCc---chhHHHHHHHHHHCCCeEEEEecCC
Q 020104            5 KGRVCVTGGT---GFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGat---G~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      .++|.|.|++   |.+|..+++.|++.||+|+.++++.
T Consensus        14 p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~   51 (138)
T 1y81_A           14 FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNY   51 (138)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTC
T ss_pred             CCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCC
Confidence            4689999987   9999999999999999977665443

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=97.12  E-value=0.0012  Score=57.28  Aligned_cols=32  Identities=22%  Similarity=0.366  Sum_probs=27.5

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC-CeEEEEe
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTV   36 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~   36 (331)
                      |+||.|.||||++|+.+++.|.+.. .+|.++.
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~   36 (350)
T 2ep5_A            4 KIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVS   36 (350)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred             CcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEe
Confidence            5789999999999999999988764 5777775

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=97.12  E-value=0.0011  Score=58.46  Aligned_cols=69  Identities=14%  Similarity=0.169  Sum_probs=53.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      ++++|+|+|+ |.+|+.+++.+.+.|++|++++.++.     .... . +        --+.+..|..|.+.+.++.+.+
T Consensus        11 ~~~~IlIlG~-G~lg~~la~aa~~lG~~viv~d~~~~-----~p~~-~-~--------ad~~~~~~~~d~~~l~~~~~~~   74 (377)
T 3orq_A           11 FGATIGIIGG-GQLGKMMAQSAQKMGYKVVVLDPSED-----CPCR-Y-V--------AHEFIQAKYDDEKALNQLGQKC   74 (377)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCTT-----CTTG-G-G--------SSEEEECCTTCHHHHHHHHHHC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCC-----Chhh-h-h--------CCEEEECCCCCHHHHHHHHHhC
Confidence            4578999995 89999999999999999999987662     1110 0 0        1146678999999999988889


Q ss_pred             cEEEE
Q 020104           84 TGVLH   88 (331)
Q Consensus        84 d~Vih   88 (331)
                      |+|..
T Consensus        75 dvi~~   79 (377)
T 3orq_A           75 DVITY   79 (377)
T ss_dssp             SEEEE
T ss_pred             Cccee
Confidence            98854

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=97.10  E-value=0.00043  Score=58.97  Aligned_cols=74  Identities=15%  Similarity=0.028  Sum_probs=50.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+.+|||+||+|.+|...++.+...|.+|+++++++     +..+..   +++.     ...+ .|..+.+++.+.+.++
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~-----~~~~~~---~~~g-----a~~~-~~~~~~~~~~~~~~~~  190 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRP-----EKLALP---LALG-----AEEA-ATYAEVPERAKAWGGL  190 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSG-----GGSHHH---HHTT-----CSEE-EEGGGHHHHHHHTTSE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHH---HhcC-----CCEE-EECCcchhHHHHhcCc
Confidence            356899999999999999999999999999999977     232222   2221     1111 2333312344445789


Q ss_pred             cEEEEeccc
Q 020104           84 TGVLHVATP   92 (331)
Q Consensus        84 d~Vih~a~~   92 (331)
                      |+||+ ++.
T Consensus       191 d~vid-~g~  198 (302)
T 1iz0_A          191 DLVLE-VRG  198 (302)
T ss_dssp             EEEEE-CSC
T ss_pred             eEEEE-CCH
Confidence            99999 763

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=97.10  E-value=0.00024  Score=61.55  Aligned_cols=69  Identities=12%  Similarity=0.086  Sum_probs=56.2

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH-hcCcc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA-IAGCT   84 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d   84 (331)
                      ++|+|.|+ |.+|+.+++.|.+.|+ |.++++++     +.   .+ +.+     .++.++.||..|++.+.++ ++++|
T Consensus       116 ~~viI~G~-G~~g~~l~~~L~~~g~-v~vid~~~-----~~---~~-~~~-----~~~~~i~gd~~~~~~L~~a~i~~a~  179 (336)
T 1lnq_A          116 RHVVICGW-SESTLECLRELRGSEV-FVLAEDEN-----VR---KK-VLR-----SGANFVHGDPTRVSDLEKANVRGAR  179 (336)
T ss_dssp             CEEEEESC-CHHHHHHHTTGGGSCE-EEEESCGG-----GH---HH-HHH-----TTCEEEESCTTSHHHHHHTCSTTEE
T ss_pred             CCEEEECC-cHHHHHHHHHHHhCCc-EEEEeCCh-----hh---hh-HHh-----CCcEEEEeCCCCHHHHHhcChhhcc
Confidence            47999995 9999999999999999 99998877     22   22 222     4688999999999988887 77899


Q ss_pred             EEEEec
Q 020104           85 GVLHVA   90 (331)
Q Consensus        85 ~Vih~a   90 (331)
                      .||-+.
T Consensus       180 ~vi~~~  185 (336)
T 1lnq_A          180 AVIVDL  185 (336)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            998654

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=97.10  E-value=0.00075  Score=55.26  Aligned_cols=34  Identities=9%  Similarity=0.116  Sum_probs=28.0

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEE-EecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTT-TVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~-~~r~~   39 (331)
                      |+||.|+|+ |.+|+.+++.+.+.+.++.+ ++|+.
T Consensus         3 MmkI~ViGa-GrMG~~i~~~l~~~~~eLva~~d~~~   37 (243)
T 3qy9_A            3 SMKILLIGY-GAMNQRVARLAEEKGHEIVGVIENTP   37 (243)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEECSSC
T ss_pred             ceEEEEECc-CHHHHHHHHHHHhCCCEEEEEEecCc
Confidence            579999999 99999999999988667665 45554

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=97.09  E-value=0.00066  Score=58.95  Aligned_cols=76  Identities=16%  Similarity=0.107  Sum_probs=49.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCC-ccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHP-DGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~-   81 (331)
                      .+++|||+||+|.+|...++.+...|.+|+++++++     ++.+..+   ++..   . ..+..+ .+. +.+.++.. 
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~-----~~~~~~~---~~ga---~-~v~~~~-~~~~~~v~~~~~~  225 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRT-----AATEFVK---SVGA---D-IVLPLE-EGWAKAVREATGG  225 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSG-----GGHHHHH---HHTC---S-EEEESS-TTHHHHHHHHTTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCH-----HHHHHHH---hcCC---c-EEecCc-hhHHHHHHHHhCC
Confidence            356899999999999999999999999999999987     3333322   2211   1 222222 121 12333332 


Q ss_pred             -CccEEEEeccc
Q 020104           82 -GCTGVLHVATP   92 (331)
Q Consensus        82 -~~d~Vih~a~~   92 (331)
                       ++|+||++++.
T Consensus       226 ~g~Dvvid~~g~  237 (342)
T 4eye_A          226 AGVDMVVDPIGG  237 (342)
T ss_dssp             SCEEEEEESCC-
T ss_pred             CCceEEEECCch
Confidence             59999999874

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=97.09  E-value=0.00098  Score=59.90  Aligned_cols=33  Identities=21%  Similarity=0.228  Sum_probs=30.7

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      |+|.|+| +|++|..++..|++.|++|++++|++
T Consensus         1 mkI~VIG-~G~vG~~~A~~la~~G~~V~~~d~~~   33 (436)
T 1mv8_A            1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4799998 79999999999999999999999987

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=97.09  E-value=0.0019  Score=56.17  Aligned_cols=94  Identities=17%  Similarity=0.224  Sum_probs=59.7

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCc---cHHHHh--
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPD---GFDAAI--   80 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~---~~~~~~--   80 (331)
                      ++++|+||+|-+|...++.+...|.+|+++++++     ++.+..   +++..   . ..  .|..+.+   .+.++.  
T Consensus       166 ~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~-----~~~~~~---~~~Ga---~-~~--~~~~~~~~~~~v~~~~~~  231 (349)
T 3pi7_A          166 KAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRD-----EQIALL---KDIGA---A-HV--LNEKAPDFEATLREVMKA  231 (349)
T ss_dssp             SEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCG-----GGHHHH---HHHTC---S-EE--EETTSTTHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHH---HHcCC---C-EE--EECCcHHHHHHHHHHhcC
Confidence            6899999999999999999999999999999877     333322   22211   1 12  2333322   222222  


Q ss_pred             cCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecc
Q 020104           81 AGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSS  133 (331)
Q Consensus        81 ~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS  133 (331)
                      .++|+||++++.          ..       ....++.++..   .+++.+++
T Consensus       232 ~g~D~vid~~g~----------~~-------~~~~~~~l~~~---G~iv~~G~  264 (349)
T 3pi7_A          232 EQPRIFLDAVTG----------PL-------ASAIFNAMPKR---ARWIIYGR  264 (349)
T ss_dssp             HCCCEEEESSCH----------HH-------HHHHHHHSCTT---CEEEECCC
T ss_pred             CCCcEEEECCCC----------hh-------HHHHHhhhcCC---CEEEEEec
Confidence            279999999873          11       12344555444   48888775

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=97.09  E-value=0.0033  Score=54.04  Aligned_cols=35  Identities=17%  Similarity=0.259  Sum_probs=29.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHC-CCeEEEEecC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDH-GYSVTTTVRS   38 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~   38 (331)
                      .|+||.|+||||++|+.|++.|.++ ++++..+..+
T Consensus         3 ~M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~   38 (337)
T 3dr3_A            3 AMLNTLIVGASGYAGAELVTYVNRHPHMNITALTVS   38 (337)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEE
T ss_pred             CceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEec
Confidence            3679999999999999999999985 5687776543

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=97.08  E-value=0.00053  Score=59.10  Aligned_cols=75  Identities=19%  Similarity=0.102  Sum_probs=50.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCcc---HHHHh
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDG---FDAAI   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~---~~~~~   80 (331)
                      .+++|||+||+|-+|...++.+...|.+|+++++++     ++   ++.++++..   . ..  .|..+.+.   +.+..
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~-----~~---~~~~~~~Ga---~-~~--~~~~~~~~~~~~~~~~  205 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSP-----EK---AAHAKALGA---W-ET--IDYSHEDVAKRVLELT  205 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSH-----HH---HHHHHHHTC---S-EE--EETTTSCHHHHHHHHT
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCH-----HH---HHHHHHcCC---C-EE--EeCCCccHHHHHHHHh
Confidence            357899999999999999999999999999999877     22   222222211   1 12  24444332   22333


Q ss_pred             c--CccEEEEeccc
Q 020104           81 A--GCTGVLHVATP   92 (331)
Q Consensus        81 ~--~~d~Vih~a~~   92 (331)
                      .  ++|+||++++.
T Consensus       206 ~~~g~Dvvid~~g~  219 (325)
T 3jyn_A          206 DGKKCPVVYDGVGQ  219 (325)
T ss_dssp             TTCCEEEEEESSCG
T ss_pred             CCCCceEEEECCCh
Confidence            2  69999999874

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=97.06  E-value=0.001  Score=57.68  Aligned_cols=75  Identities=11%  Similarity=0.074  Sum_probs=50.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCcc---HHHHh
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDG---FDAAI   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~---~~~~~   80 (331)
                      .+++|||+||+|-+|...++.+...|.+|+++++++     ++.+..+.+   ..   . ..  .|..+.+.   +.+..
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~-----~~~~~~~~l---ga---~-~~--~~~~~~~~~~~~~~~~  209 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNN-----KHTEELLRL---GA---A-YV--IDTSTAPLYETVMELT  209 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSS-----TTHHHHHHH---TC---S-EE--EETTTSCHHHHHHHHT
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCH-----HHHHHHHhC---CC---c-EE--EeCCcccHHHHHHHHh
Confidence            357899999999999999999988999999999987     333333322   11   1 11  24444332   22222


Q ss_pred             c--CccEEEEeccc
Q 020104           81 A--GCTGVLHVATP   92 (331)
Q Consensus        81 ~--~~d~Vih~a~~   92 (331)
                      .  ++|+||++++.
T Consensus       210 ~~~g~Dvvid~~g~  223 (340)
T 3gms_A          210 NGIGADAAIDSIGG  223 (340)
T ss_dssp             TTSCEEEEEESSCH
T ss_pred             CCCCCcEEEECCCC
Confidence            2  69999999873

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=97.04  E-value=0.00073  Score=58.76  Aligned_cols=75  Identities=13%  Similarity=0.112  Sum_probs=50.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHC-CCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCcc---HHHH
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDH-GYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDG---FDAA   79 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~---~~~~   79 (331)
                      .+++|||+||+|-+|..+++.+... |.+|+++++++     +..+.   ++++.   .. .  ..|..+.+.   +.++
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~-----~~~~~---~~~~g---~~-~--~~~~~~~~~~~~~~~~  235 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE-----EAVEA---AKRAG---AD-Y--VINASMQDPLAEIRRI  235 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH-----HHHHH---HHHHT---CS-E--EEETTTSCHHHHHHHH
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCH-----HHHHH---HHHhC---CC-E--EecCCCccHHHHHHHH
Confidence            3578999999989999999999998 99999999876     22222   22221   11 1  124444433   3444


Q ss_pred             h--cCccEEEEeccc
Q 020104           80 I--AGCTGVLHVATP   92 (331)
Q Consensus        80 ~--~~~d~Vih~a~~   92 (331)
                      .  .++|+||++++.
T Consensus       236 ~~~~~~d~vi~~~g~  250 (347)
T 1jvb_A          236 TESKGVDAVIDLNNS  250 (347)
T ss_dssp             TTTSCEEEEEESCCC
T ss_pred             hcCCCceEEEECCCC
Confidence            4  369999999874

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.03  E-value=0.00044  Score=58.69  Aligned_cols=75  Identities=13%  Similarity=0.069  Sum_probs=50.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      ..++|+|+|+ |.+|+.++..|++.|. +|++.+|+.     ++.+.+...  +... .. .     ..+.+++.+.+.+
T Consensus       140 ~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~-----~ka~~la~~--~~~~-~~-~-----~~~~~~~~~~~~~  204 (297)
T 2egg_A          140 DGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTV-----EKAERLVRE--GDER-RS-A-----YFSLAEAETRLAE  204 (297)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSH-----HHHHHHHHH--SCSS-SC-C-----EECHHHHHHTGGG
T ss_pred             CCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCH-----HHHHHHHHH--hhhc-cC-c-----eeeHHHHHhhhcc
Confidence            3578999997 7899999999999997 999999987     232222111  1100 00 1     1122356667788


Q ss_pred             ccEEEEecccC
Q 020104           83 CTGVLHVATPV   93 (331)
Q Consensus        83 ~d~Vih~a~~~   93 (331)
                      +|+||++.+..
T Consensus       205 aDivIn~t~~~  215 (297)
T 2egg_A          205 YDIIINTTSVG  215 (297)
T ss_dssp             CSEEEECSCTT
T ss_pred             CCEEEECCCCC
Confidence            99999998753

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=97.01  E-value=0.0011  Score=59.16  Aligned_cols=69  Identities=14%  Similarity=0.201  Sum_probs=53.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      ++++|+|+|+ |.+|+.+++.+.+.|++|++++.++.     .... ..         .-+.+..|..|.+.+.++.+++
T Consensus        34 ~~~~IlIlG~-G~lg~~~~~aa~~lG~~v~v~d~~~~-----~p~~-~~---------ad~~~~~~~~d~~~l~~~a~~~   97 (419)
T 4e4t_A           34 PGAWLGMVGG-GQLGRMFCFAAQSMGYRVAVLDPDPA-----SPAG-AV---------ADRHLRAAYDDEAALAELAGLC   97 (419)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCTT-----CHHH-HH---------SSEEECCCTTCHHHHHHHHHHC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCCCc-----Cchh-hh---------CCEEEECCcCCHHHHHHHHhcC
Confidence            4578999995 89999999999999999999976652     1111 10         1145668889999999988899


Q ss_pred             cEEEE
Q 020104           84 TGVLH   88 (331)
Q Consensus        84 d~Vih   88 (331)
                      |+|+.
T Consensus        98 D~V~~  102 (419)
T 4e4t_A           98 EAVST  102 (419)
T ss_dssp             SEEEE
T ss_pred             CEEEE
Confidence            99983

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=97.00  E-value=0.0011  Score=58.04  Aligned_cols=97  Identities=16%  Similarity=0.125  Sum_probs=61.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh---
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI---   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~---   80 (331)
                      .+++|||+||+|.+|..+++.+...|.+|+++++++        ++++.++++..   . ..  .|..+. ++.+.+   
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~--------~~~~~~~~~Ga---~-~~--~~~~~~-~~~~~~~~~  227 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSD--------EKSAFLKSLGC---D-RP--INYKTE-PVGTVLKQE  227 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSH--------HHHHHHHHTTC---S-EE--EETTTS-CHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCH--------HHHHHHHHcCC---c-EE--EecCCh-hHHHHHHHh
Confidence            356899999999999999999999999999999876        22222322211   1 12  233332 233322   


Q ss_pred             --cCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccc
Q 020104           81 --AGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNA  135 (331)
Q Consensus        81 --~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~  135 (331)
                        .++|+||++++.          .       .....++.++..|   ++|.+++..
T Consensus       228 ~~~g~D~vid~~g~----------~-------~~~~~~~~l~~~G---~iv~~g~~~  264 (362)
T 2c0c_A          228 YPEGVDVVYESVGG----------A-------MFDLAVDALATKG---RLIVIGFIS  264 (362)
T ss_dssp             CTTCEEEEEECSCT----------H-------HHHHHHHHEEEEE---EEEECCCGG
T ss_pred             cCCCCCEEEECCCH----------H-------HHHHHHHHHhcCC---EEEEEeCCC
Confidence              268999999872          1       1224455555544   888887643

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=97.00  E-value=0.00023  Score=62.30  Aligned_cols=74  Identities=18%  Similarity=0.221  Sum_probs=51.8

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      .++|+|+|+ |-+|+.+++.|...|.+|++++|++     +..+.+..+..     ..+..+   ..+.+++.+.+.++|
T Consensus       167 ~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~-----~r~~~~~~~~~-----~~~~~~---~~~~~~~~~~~~~~D  232 (361)
T 1pjc_A          167 PGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINV-----ERLSYLETLFG-----SRVELL---YSNSAEIETAVAEAD  232 (361)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHG-----GGSEEE---ECCHHHHHHHHHTCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCH-----HHHHHHHHhhC-----ceeEee---eCCHHHHHHHHcCCC
Confidence            368999998 9999999999999999999999987     22222221111     112121   123345667778999


Q ss_pred             EEEEeccc
Q 020104           85 GVLHVATP   92 (331)
Q Consensus        85 ~Vih~a~~   92 (331)
                      +||++++.
T Consensus       233 vVI~~~~~  240 (361)
T 1pjc_A          233 LLIGAVLV  240 (361)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99999875

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=96.99  E-value=0.00046  Score=55.89  Aligned_cols=35  Identities=20%  Similarity=0.206  Sum_probs=31.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEE-EecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTT-TVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~-~~r~~   39 (331)
                      +||+|.|+| +|.+|+.+++.|.+.|++|.+ .+|++
T Consensus        22 ~mmkI~IIG-~G~mG~~la~~l~~~g~~V~~v~~r~~   57 (220)
T 4huj_A           22 SMTTYAIIG-AGAIGSALAERFTAAQIPAIIANSRGP   57 (220)
T ss_dssp             GSCCEEEEE-CHHHHHHHHHHHHHTTCCEEEECTTCG
T ss_pred             cCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEECCCH
Confidence            357999999 799999999999999999998 77876

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=96.98  E-value=0.00054  Score=57.61  Aligned_cols=77  Identities=19%  Similarity=0.294  Sum_probs=51.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCcccccc-ccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKDLSF-LKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      ..++++|+|+ |.+|+.++..|.+.|. +|++++|+.     ++.+.+.. +...   .+.+.+...+   .+++.+.+.
T Consensus       126 ~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~-----~~a~~la~~~~~~---~~~~~i~~~~---~~~l~~~l~  193 (283)
T 3jyo_A          126 KLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDT-----SRAQALADVINNA---VGREAVVGVD---ARGIEDVIA  193 (283)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSH-----HHHHHHHHHHHHH---HTSCCEEEEC---STTHHHHHH
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCH-----HHHHHHHHHHHhh---cCCceEEEcC---HHHHHHHHh
Confidence            3578999997 8999999999999997 799999987     33332211 1110   0112222223   345777788


Q ss_pred             CccEEEEeccc
Q 020104           82 GCTGVLHVATP   92 (331)
Q Consensus        82 ~~d~Vih~a~~   92 (331)
                      ++|+|||+.+.
T Consensus       194 ~~DiVInaTp~  204 (283)
T 3jyo_A          194 AADGVVNATPM  204 (283)
T ss_dssp             HSSEEEECSST
T ss_pred             cCCEEEECCCC
Confidence            89999998753

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=96.98  E-value=0.0015  Score=55.89  Aligned_cols=67  Identities=19%  Similarity=0.282  Sum_probs=48.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .||+|.|+| +|.+|..+++.|++.|++|++.+|++     +..+.+.   +     .++..       ..+..++++++
T Consensus        20 ~m~~I~iIG-~G~mG~~~A~~l~~~G~~V~~~dr~~-----~~~~~l~---~-----~g~~~-------~~~~~~~~~~a   78 (310)
T 3doj_A           20 HMMEVGFLG-LGIMGKAMSMNLLKNGFKVTVWNRTL-----SKCDELV---E-----HGASV-------CESPAEVIKKC   78 (310)
T ss_dssp             CSCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSG-----GGGHHHH---H-----TTCEE-------CSSHHHHHHHC
T ss_pred             cCCEEEEEC-ccHHHHHHHHHHHHCCCeEEEEeCCH-----HHHHHHH---H-----CCCeE-------cCCHHHHHHhC
Confidence            457999998 69999999999999999999999987     3333222   1     12221       23566777788


Q ss_pred             cEEEEecc
Q 020104           84 TGVLHVAT   91 (331)
Q Consensus        84 d~Vih~a~   91 (331)
                      |+||-+..
T Consensus        79 Dvvi~~vp   86 (310)
T 3doj_A           79 KYTIAMLS   86 (310)
T ss_dssp             SEEEECCS
T ss_pred             CEEEEEcC
Confidence            99987653

>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A*

Probab=96.97  E-value=0.00054  Score=52.24  Aligned_cols=75  Identities=13%  Similarity=0.201  Sum_probs=49.8

Q ss_pred             cchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCC--ccHHHHhc------CccE
Q 020104           14 TGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHP--DGFDAAIA------GCTG   85 (331)
Q Consensus        14 tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~--~~~~~~~~------~~d~   85 (331)
                      +|.++...++.|.+.|.+|++..|+..... ......+.+.+.   ......+.+|+.++  +++.++++      +-|+
T Consensus        25 s~~p~~a~a~~La~~Ga~vvi~~r~~~e~~-~~~~~~~~~~~~---G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G~dV  100 (157)
T 3gxh_A           25 SGLPNEQQFSLLKQAGVDVVINLMPDSSKD-AHPDEGKLVTQA---GMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGKDV  100 (157)
T ss_dssp             EBCCCHHHHHHHHHTTCCEEEECSCTTSTT-SCTTHHHHHHHT---TCEEEECCCCTTSCCHHHHHHHHHHHHHTTTSCE
T ss_pred             cCCCCHHHHHHHHHcCCCEEEECCCccccc-ccccHHHHHHHc---CCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCCE
Confidence            578999999999999999999888652100 000011111111   13466778999998  77776653      2399


Q ss_pred             EEEeccc
Q 020104           86 VLHVATP   92 (331)
Q Consensus        86 Vih~a~~   92 (331)
                      +|||||.
T Consensus       101 LVnnAgg  107 (157)
T 3gxh_A          101 LVHCLAN  107 (157)
T ss_dssp             EEECSBS
T ss_pred             EEECCCC
Confidence            9999985

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=96.96  E-value=0.0036  Score=55.93  Aligned_cols=92  Identities=12%  Similarity=0.206  Sum_probs=59.4

Q ss_pred             CceEEEecCcchhHHHHHHHHHHC-CC---eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCC--CC-ccHH
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDH-GY---SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLS--HP-DGFD   77 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~-g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~--~~-~~~~   77 (331)
                      ++||+|+| .|-||+.+++.|+++ ++   +|++++.+.     ...+..+.        .++++...+++  |. +.+.
T Consensus        13 ~~rVlIIG-aGgVG~~va~lla~~~dv~~~~I~vaD~~~-----~~~~~~~~--------~g~~~~~~~Vdadnv~~~l~   78 (480)
T 2ph5_A           13 KNRFVILG-FGCVGQALMPLIFEKFDIKPSQVTIIAAEG-----TKVDVAQQ--------YGVSFKLQQITPQNYLEVIG   78 (480)
T ss_dssp             CSCEEEEC-CSHHHHHHHHHHHHHBCCCGGGEEEEESSC-----CSCCHHHH--------HTCEEEECCCCTTTHHHHTG
T ss_pred             CCCEEEEC-cCHHHHHHHHHHHhCCCCceeEEEEeccch-----hhhhHHhh--------cCCceeEEeccchhHHHHHH
Confidence            46899999 799999999999986 45   688777655     11111111        13455555553  33 2345


Q ss_pred             HHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEE
Q 020104           78 AAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVV  129 (331)
Q Consensus        78 ~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v  129 (331)
                      +++++.|+|||++-...                 ...++++|.+.| + .+|
T Consensus        79 aLl~~~DvVIN~s~~~~-----------------~l~Im~acleaG-v-~Yl  111 (480)
T 2ph5_A           79 STLEENDFLIDVSIGIS-----------------SLALIILCNQKG-A-LYI  111 (480)
T ss_dssp             GGCCTTCEEEECCSSSC-----------------HHHHHHHHHHHT-C-EEE
T ss_pred             HHhcCCCEEEECCcccc-----------------CHHHHHHHHHcC-C-CEE
Confidence            56766799998653321                 246899999998 5 444

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.94  E-value=0.0026  Score=52.40  Aligned_cols=109  Identities=16%  Similarity=0.099  Sum_probs=64.2

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCC-----------cccccccc-CCCCCCC--cEEEEeCCC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRN-----------SKDLSFLK-NLPGASE--RLRIFHADL   70 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~-----------~~~~~~~~-~~~~~~~--~~~~~~~D~   70 (331)
                      ++|+|.|+ |-+|+++++.|+..|. ++.+++++.-...+-.           ..+...+. .+....+  .++.+..++
T Consensus        32 ~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~~  110 (249)
T 1jw9_B           32 SRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALL  110 (249)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCC
T ss_pred             CeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEeccC
Confidence            58999995 8999999999999995 8888888762110000           01111110 0000112  355555556


Q ss_pred             CCCccHHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEeccc
Q 020104           71 SHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSN  134 (331)
Q Consensus        71 ~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~  134 (331)
                      .+ +.+.+++.++|+||.+...       ..         .-..+.++|++.+  ..+|+.+..
T Consensus       111 ~~-~~~~~~~~~~DvVi~~~d~-------~~---------~~~~l~~~~~~~~--~p~i~~~~~  155 (249)
T 1jw9_B          111 DD-AELAALIAEHDLVLDCTDN-------VA---------VRNQLNAGCFAAK--VPLVSGAAI  155 (249)
T ss_dssp             CH-HHHHHHHHTSSEEEECCSS-------HH---------HHHHHHHHHHHHT--CCEEEEEEE
T ss_pred             CH-hHHHHHHhCCCEEEEeCCC-------HH---------HHHHHHHHHHHcC--CCEEEeeec
Confidence            43 4567778899999976431       11         1234566677776  356766544

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=96.92  E-value=0.00055  Score=58.37  Aligned_cols=35  Identities=17%  Similarity=0.037  Sum_probs=31.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      ++|+|.|+| +|.+|+.+++.|++.|++|++.+|++
T Consensus         6 ~~~~I~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            6 TDFHVGIVG-LGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             -CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            457899998 69999999999999999999999987

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=96.89  E-value=0.0011  Score=55.34  Aligned_cols=68  Identities=9%  Similarity=0.089  Sum_probs=48.3

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      +++++|+|+ |.+|+.++..|.+.|. +|++++|+.     ++.+.+.         ..+..+     ..+++.++++++
T Consensus       117 ~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~-----~~a~~la---------~~~~~~-----~~~~~~~~~~~a  176 (277)
T 3don_A          117 DAYILILGA-GGASKGIANELYKIVRPTLTVANRTM-----SRFNNWS---------LNINKI-----NLSHAESHLDEF  176 (277)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCG-----GGGTTCC---------SCCEEE-----CHHHHHHTGGGC
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCH-----HHHHHHH---------Hhcccc-----cHhhHHHHhcCC
Confidence            468999996 8999999999999998 899999987     2222221         112221     234466667889


Q ss_pred             cEEEEeccc
Q 020104           84 TGVLHVATP   92 (331)
Q Consensus        84 d~Vih~a~~   92 (331)
                      |+||++.+.
T Consensus       177 DiVInaTp~  185 (277)
T 3don_A          177 DIIINTTPA  185 (277)
T ss_dssp             SEEEECCC-
T ss_pred             CEEEECccC
Confidence            999998653

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=96.86  E-value=0.0012  Score=55.96  Aligned_cols=66  Identities=18%  Similarity=0.267  Sum_probs=46.6

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      +|+|.|+| +|.+|+.++..|.+.|++|.+++|++     +..+.   +.+     .++..       ..++.++++++|
T Consensus         5 ~m~i~iiG-~G~~G~~~a~~l~~~g~~V~~~~~~~-----~~~~~---~~~-----~g~~~-------~~~~~~~~~~~D   63 (299)
T 1vpd_A            5 TMKVGFIG-LGIMGKPMSKNLLKAGYSLVVSDRNP-----EAIAD---VIA-----AGAET-------ASTAKAIAEQCD   63 (299)
T ss_dssp             -CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCH-----HHHHH---HHH-----TTCEE-------CSSHHHHHHHCS
T ss_pred             cceEEEEC-chHHHHHHHHHHHhCCCEEEEEeCCH-----HHHHH---HHH-----CCCee-------cCCHHHHHhCCC
Confidence            46899999 69999999999999999999998876     22222   211     12221       234566677899


Q ss_pred             EEEEecc
Q 020104           85 GVLHVAT   91 (331)
Q Consensus        85 ~Vih~a~   91 (331)
                      +||-+..
T Consensus        64 ~vi~~v~   70 (299)
T 1vpd_A           64 VIITMLP   70 (299)
T ss_dssp             EEEECCS
T ss_pred             EEEEECC
Confidence            9997754

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=96.86  E-value=0.0014  Score=56.94  Aligned_cols=34  Identities=15%  Similarity=0.187  Sum_probs=27.0

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC-CeEEEEecC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRS   38 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~   38 (331)
                      ++||.|.||||++|..|++.|.++. .++..+..+
T Consensus         7 ~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~   41 (359)
T 4dpl_A            7 TLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGK   41 (359)
T ss_dssp             CEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEES
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECc
Confidence            4689999999999999999887764 466665433

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=96.86  E-value=0.0014  Score=56.94  Aligned_cols=34  Identities=15%  Similarity=0.187  Sum_probs=27.0

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC-CeEEEEecC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRS   38 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~   38 (331)
                      ++||.|.||||++|..|++.|.++. .++..+..+
T Consensus         7 ~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~   41 (359)
T 4dpk_A            7 TLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGK   41 (359)
T ss_dssp             CEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEES
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECc
Confidence            4689999999999999999887764 466665433

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=96.85  E-value=0.00091  Score=56.49  Aligned_cols=66  Identities=18%  Similarity=0.212  Sum_probs=47.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      ||+|.|+| +|.+|+.+++.|++.|++|++.+|++     +..+.+...        ++..       ..+..++++++|
T Consensus         1 M~~I~iiG-~G~mG~~~a~~l~~~G~~V~~~dr~~-----~~~~~~~~~--------g~~~-------~~~~~~~~~~ad   59 (287)
T 3pdu_A            1 MTTYGFLG-LGIMGGPMAANLVRAGFDVTVWNRNP-----AKCAPLVAL--------GARQ-------ASSPAEVCAACD   59 (287)
T ss_dssp             CCCEEEEC-CSTTHHHHHHHHHHHTCCEEEECSSG-----GGGHHHHHH--------TCEE-------CSCHHHHHHHCS
T ss_pred             CCeEEEEc-cCHHHHHHHHHHHHCCCeEEEEcCCH-----HHHHHHHHC--------CCee-------cCCHHHHHHcCC
Confidence            36899998 79999999999999999999999988     333322211        1211       235667777889


Q ss_pred             EEEEecc
Q 020104           85 GVLHVAT   91 (331)
Q Consensus        85 ~Vih~a~   91 (331)
                      +||-+..
T Consensus        60 vvi~~v~   66 (287)
T 3pdu_A           60 ITIAMLA   66 (287)
T ss_dssp             EEEECCS
T ss_pred             EEEEEcC
Confidence            9987654

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=96.83  E-value=0.00075  Score=59.34  Aligned_cols=75  Identities=16%  Similarity=0.076  Sum_probs=52.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+++|+|+|+ |-+|+.+++.+...|.+|++++|++     ...+.+...  ..   ..+.   .+..+..++.+++.++
T Consensus       167 ~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~~-----~~l~~~~~~--~g---~~~~---~~~~~~~~l~~~l~~a  232 (377)
T 2vhw_A          167 EPADVVVIGA-GTAGYNAARIANGMGATVTVLDINI-----DKLRQLDAE--FC---GRIH---TRYSSAYELEGAVKRA  232 (377)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHH--TT---TSSE---EEECCHHHHHHHHHHC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCH-----HHHHHHHHh--cC---CeeE---eccCCHHHHHHHHcCC
Confidence            3578999997 9999999999999999999999987     222222110  11   1111   1223345677788899


Q ss_pred             cEEEEeccc
Q 020104           84 TGVLHVATP   92 (331)
Q Consensus        84 d~Vih~a~~   92 (331)
                      |+||.+++.
T Consensus       233 DvVi~~~~~  241 (377)
T 2vhw_A          233 DLVIGAVLV  241 (377)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999998864

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=96.83  E-value=0.0074  Score=51.12  Aligned_cols=35  Identities=20%  Similarity=0.324  Sum_probs=28.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      |.+||-++| .|.+|..+++.|++.||+|++.+|++
T Consensus         4 Ms~kIgfIG-LG~MG~~mA~~L~~~G~~V~v~dr~~   38 (297)
T 4gbj_A            4 MSEKIAFLG-LGNLGTPIAEILLEAGYELVVWNRTA   38 (297)
T ss_dssp             CCCEEEEEC-CSTTHHHHHHHHHHTTCEEEEC----
T ss_pred             CCCcEEEEe-cHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            345899999 79999999999999999999999988

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=96.82  E-value=0.0014  Score=55.58  Aligned_cols=65  Identities=12%  Similarity=0.034  Sum_probs=47.8

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      +|+|.|+| +|.+|..+++.|++.|++|++.+|++     +..+.+..        .++..       ..++.++++ +|
T Consensus        15 ~~~I~vIG-~G~mG~~~A~~l~~~G~~V~~~dr~~-----~~~~~~~~--------~g~~~-------~~~~~~~~~-aD   72 (296)
T 3qha_A           15 QLKLGYIG-LGNMGAPMATRMTEWPGGVTVYDIRI-----EAMTPLAE--------AGATL-------ADSVADVAA-AD   72 (296)
T ss_dssp             CCCEEEEC-CSTTHHHHHHHHTTSTTCEEEECSST-----TTSHHHHH--------TTCEE-------CSSHHHHTT-SS
T ss_pred             CCeEEEEC-cCHHHHHHHHHHHHCCCeEEEEeCCH-----HHHHHHHH--------CCCEE-------cCCHHHHHh-CC
Confidence            45899998 69999999999999999999999988     33333221        12221       235677777 99


Q ss_pred             EEEEecc
Q 020104           85 GVLHVAT   91 (331)
Q Consensus        85 ~Vih~a~   91 (331)
                      +||-+..
T Consensus        73 vvi~~vp   79 (296)
T 3qha_A           73 LIHITVL   79 (296)
T ss_dssp             EEEECCS
T ss_pred             EEEEECC
Confidence            9997653

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=96.81  E-value=0.0028  Score=56.48  Aligned_cols=120  Identities=13%  Similarity=0.065  Sum_probs=66.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCC--CCCCCcEE-E----E-eCCCCCCcc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNL--PGASERLR-I----F-HADLSHPDG   75 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~----~-~~D~~~~~~   75 (331)
                      .|.+|-|.| .||+|..++..|++.|++|++++.++        ++.+.+.+-  +...++++ .    + .+.+.--.+
T Consensus        20 ~m~~IaViG-lGYVGLp~A~~~A~~G~~V~g~Did~--------~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~   90 (444)
T 3vtf_A           20 HMASLSVLG-LGYVGVVHAVGFALLGHRVVGYDVNP--------SIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAES   90 (444)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSCH--------HHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSS
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHHhCCCcEEEEECCH--------HHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcC
Confidence            456899998 79999999999999999999999887        233222210  00001100 0    0 011111234


Q ss_pred             HHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccc
Q 020104           76 FDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNA  135 (331)
Q Consensus        76 ~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~  135 (331)
                      ..++++.+|++|-+.+........+.-.+.   ....+.+.+.++..+.-.-+|+=||..
T Consensus        91 ~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v---~~a~~~I~~~l~~~~~g~lVV~eSTVp  147 (444)
T 3vtf_A           91 AEEAVAATDATFIAVGTPPAPDGSADLRYV---EAAARAVGRGIRAKGRWHLVVVKSTVP  147 (444)
T ss_dssp             HHHHHHTSSEEEECCCCCBCTTSSBCCHHH---HHHHHHHHHHHHHHCSCCEEEECSCCC
T ss_pred             HHHHHhcCCceEEEecCCCCCCCCCCcHHH---HHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence            566777889998887643211111210111   233455556555433124566667743

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=96.80  E-value=0.0039  Score=51.78  Aligned_cols=57  Identities=12%  Similarity=0.143  Sum_probs=48.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+++++|+|+++.+|+.++..|++.|..|+++.|..                                  ..+.+.++.+
T Consensus       159 ~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t----------------------------------~~L~~~~~~A  204 (285)
T 3p2o_A          159 EGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT----------------------------------KDLSLYTRQA  204 (285)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC----------------------------------SCHHHHHTTC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc----------------------------------hhHHHHhhcC
Confidence            468999999999999999999999999999886644                                  2467788899


Q ss_pred             cEEEEecccCC
Q 020104           84 TGVLHVATPVD   94 (331)
Q Consensus        84 d~Vih~a~~~~   94 (331)
                      |+||...+...
T Consensus       205 DIVI~Avg~p~  215 (285)
T 3p2o_A          205 DLIIVAAGCVN  215 (285)
T ss_dssp             SEEEECSSCTT
T ss_pred             CEEEECCCCCC
Confidence            99999887543

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=96.79  E-value=0.0027  Score=56.39  Aligned_cols=69  Identities=16%  Similarity=0.182  Sum_probs=52.3

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      +++|+|+|+ |.+|+.+++.+.+.|++|++++ ++.    .......         .....+.+|..|.+.+.++.+.+|
T Consensus        24 ~~~I~ilGg-G~lg~~l~~aa~~lG~~v~~~d-~~~----~p~~~~a---------d~~~~~~~~~~d~~~l~~~a~~~d   88 (403)
T 3k5i_A           24 SRKVGVLGG-GQLGRMLVESANRLNIQVNVLD-ADN----SPAKQIS---------AHDGHVTGSFKEREAVRQLAKTCD   88 (403)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCEEEEEE-STT----CTTGGGC---------CSSCCEESCTTCHHHHHHHHTTCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEE-CCC----CcHHHhc---------cccceeecCCCCHHHHHHHHHhCC
Confidence            568999996 8999999999999999999998 652    1111110         111346789999999999999999


Q ss_pred             EEEE
Q 020104           85 GVLH   88 (331)
Q Consensus        85 ~Vih   88 (331)
                      +|+.
T Consensus        89 ~i~~   92 (403)
T 3k5i_A           89 VVTA   92 (403)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8874

>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}

Probab=96.78  E-value=0.0031  Score=55.47  Aligned_cols=68  Identities=10%  Similarity=0.199  Sum_probs=51.4

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      ||+|+|+|+ |.+|+.+++.+.+.|++|++++.++.     .... . +       .. ..+..|..|.+.+.+++.++|
T Consensus         1 M~~Ililg~-g~~g~~~~~a~~~~G~~v~~~~~~~~-----~~~~-~-~-------~~-~~~~~~~~d~~~l~~~~~~~d   64 (380)
T 3ax6_A            1 MKKIGIIGG-GQLGKMMTLEAKKMGFYVIVLDPTPR-----SPAG-Q-V-------AD-EQIVAGFFDSERIEDLVKGSD   64 (380)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSTT-----CTTG-G-G-------SS-EEEECCTTCHHHHHHHHHTCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCC-----Cchh-h-h-------Cc-eEEECCCCCHHHHHHHHhcCC
Confidence            368999996 89999999999999999999987652     1110 0 0       11 345678888888888888899


Q ss_pred             EEEE
Q 020104           85 GVLH   88 (331)
Q Consensus        85 ~Vih   88 (331)
                      .|+.
T Consensus        65 ~v~~   68 (380)
T 3ax6_A           65 VTTY   68 (380)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9885

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=96.78  E-value=0.0025  Score=55.37  Aligned_cols=34  Identities=24%  Similarity=0.196  Sum_probs=31.2

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   39 (331)
                      +.+|||+|+ |.+|...++.+...|. +|++++|++
T Consensus       168 g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~  202 (348)
T 2d8a_A          168 GKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSD  202 (348)
T ss_dssp             TCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            468999999 9999999999999998 999999876

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=96.77  E-value=0.0017  Score=54.81  Aligned_cols=65  Identities=18%  Similarity=0.230  Sum_probs=47.5

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCccE
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTG   85 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~   85 (331)
                      |+|.|+| +|.+|+.+++.|++.|++|++.+|++     +..+.+.   +     .++..       ..++.++++++|+
T Consensus         2 ~~i~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~~-----~~~~~~~---~-----~g~~~-------~~~~~~~~~~aDv   60 (287)
T 3pef_A            2 QKFGFIG-LGIMGSAMAKNLVKAGCSVTIWNRSP-----EKAEELA---A-----LGAER-------AATPCEVVESCPV   60 (287)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSG-----GGGHHHH---H-----TTCEE-------CSSHHHHHHHCSE
T ss_pred             CEEEEEe-ecHHHHHHHHHHHHCCCeEEEEcCCH-----HHHHHHH---H-----CCCee-------cCCHHHHHhcCCE
Confidence            5899999 69999999999999999999999987     3322222   1     12221       2456777788899


Q ss_pred             EEEecc
Q 020104           86 VLHVAT   91 (331)
Q Consensus        86 Vih~a~   91 (331)
                      ||-+..
T Consensus        61 vi~~vp   66 (287)
T 3pef_A           61 TFAMLA   66 (287)
T ss_dssp             EEECCS
T ss_pred             EEEEcC
Confidence            986653

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=96.76  E-value=0.0016  Score=57.01  Aligned_cols=74  Identities=15%  Similarity=0.230  Sum_probs=49.1

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCC--CccHHHHhcC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSH--PDGFDAAIAG   82 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~   82 (331)
                      +++|||+|| |.+|..+++.+...|.+|+++++++     ...++++.++++     +...+  | .+  .+.+.+.-.+
T Consensus       181 g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~-----~~~~~~~~~~~~-----ga~~v--~-~~~~~~~~~~~~~~  246 (366)
T 2cdc_A          181 CRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRRE-----PTEVEQTVIEET-----KTNYY--N-SSNGYDKLKDSVGK  246 (366)
T ss_dssp             TCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSC-----CCHHHHHHHHHH-----TCEEE--E-CTTCSHHHHHHHCC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCc-----cchHHHHHHHHh-----CCcee--c-hHHHHHHHHHhCCC
Confidence            679999999 9999999999999999999999875     111222222222     23333  4 43  1223221147


Q ss_pred             ccEEEEeccc
Q 020104           83 CTGVLHVATP   92 (331)
Q Consensus        83 ~d~Vih~a~~   92 (331)
                      +|+||++++.
T Consensus       247 ~d~vid~~g~  256 (366)
T 2cdc_A          247 FDVIIDATGA  256 (366)
T ss_dssp             EEEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999874

>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*

Probab=96.76  E-value=0.0029  Score=55.86  Aligned_cols=73  Identities=12%  Similarity=0.122  Sum_probs=53.4

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |+.++|+|+|+|+ |.+|..+++.+.+.|++|++++..+.     ... ...         .-+.+..|..|.+.+.+++
T Consensus         7 m~~~~~~ili~g~-g~~~~~~~~a~~~~G~~v~~~~~~~~-----~~~-~~~---------~d~~~~~~~~d~~~l~~~~   70 (391)
T 1kjq_A            7 LRPAATRVMLLGS-GELGKEVAIECQRLGVEVIAVDRYAD-----APA-MHV---------AHRSHVINMLDGDALRRVV   70 (391)
T ss_dssp             TSTTCCEEEEESC-SHHHHHHHHHHHTTTCEEEEEESSTT-----CGG-GGG---------SSEEEECCTTCHHHHHHHH
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEECCCC-----Cch-hhh---------ccceEECCCCCHHHHHHHH
Confidence            5566789999986 78999999999999999999987762     111 110         0134567777877777776


Q ss_pred             c--CccEEEEe
Q 020104           81 A--GCTGVLHV   89 (331)
Q Consensus        81 ~--~~d~Vih~   89 (331)
                      +  ++|.|+..
T Consensus        71 ~~~~~d~v~~~   81 (391)
T 1kjq_A           71 ELEKPHYIVPE   81 (391)
T ss_dssp             HHHCCSEEEEC
T ss_pred             HHcCCCEEEEC
Confidence            4  79999863

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=96.73  E-value=0.0016  Score=55.40  Aligned_cols=68  Identities=16%  Similarity=0.174  Sum_probs=46.1

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |+. +|+|.|+| +|.+|+.+++.|.+.|++|.+++|++     +.   ...+.+     .++..       ..+..+++
T Consensus         1 M~~-~~~i~iiG-~G~~G~~~a~~l~~~g~~V~~~~~~~-----~~---~~~~~~-----~g~~~-------~~~~~~~~   58 (301)
T 3cky_A            1 MEK-SIKIGFIG-LGAMGKPMAINLLKEGVTVYAFDLME-----AN---VAAVVA-----QGAQA-------CENNQKVA   58 (301)
T ss_dssp             ----CCEEEEEC-CCTTHHHHHHHHHHTTCEEEEECSSH-----HH---HHHHHT-----TTCEE-------CSSHHHHH
T ss_pred             CCC-CCEEEEEC-ccHHHHHHHHHHHHCCCeEEEEeCCH-----HH---HHHHHH-----CCCee-------cCCHHHHH
Confidence            654 46899999 69999999999999999999998876     22   222211     12221       12456667


Q ss_pred             cCccEEEEec
Q 020104           81 AGCTGVLHVA   90 (331)
Q Consensus        81 ~~~d~Vih~a   90 (331)
                      +++|+||-+.
T Consensus        59 ~~~D~vi~~v   68 (301)
T 3cky_A           59 AASDIIFTSL   68 (301)
T ss_dssp             HHCSEEEECC
T ss_pred             hCCCEEEEEC
Confidence            7789999765

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=96.73  E-value=0.0027  Score=55.65  Aligned_cols=74  Identities=14%  Similarity=0.076  Sum_probs=51.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccccccc-CCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLK-NLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      .+.+|||+|+ |-+|...++.+...|.+|+++++++     ..   +..+. ++.     ... ..|..+.+.+.++..+
T Consensus       187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~-----~~---~~~~~~~lG-----a~~-v~~~~~~~~~~~~~~~  251 (366)
T 1yqd_A          187 PGKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSP-----SK---KEEALKNFG-----ADS-FLVSRDQEQMQAAAGT  251 (366)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCG-----GG---HHHHHHTSC-----CSE-EEETTCHHHHHHTTTC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCH-----HH---HHHHHHhcC-----Cce-EEeccCHHHHHHhhCC
Confidence            4568999996 9999999999999999999999877     22   22222 221     111 1244455556665568


Q ss_pred             ccEEEEeccc
Q 020104           83 CTGVLHVATP   92 (331)
Q Consensus        83 ~d~Vih~a~~   92 (331)
                      +|+||++++.
T Consensus       252 ~D~vid~~g~  261 (366)
T 1yqd_A          252 LDGIIDTVSA  261 (366)
T ss_dssp             EEEEEECCSS
T ss_pred             CCEEEECCCc
Confidence            9999999874

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=96.72  E-value=0.0022  Score=55.04  Aligned_cols=66  Identities=20%  Similarity=0.203  Sum_probs=48.4

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      +|+|.|+| +|.+|..+++.|++.|++|.+.+|++     +.   .+.+.+     .++..       ..++.++++++|
T Consensus        31 ~~~I~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~~-----~~---~~~l~~-----~g~~~-------~~~~~e~~~~aD   89 (320)
T 4dll_A           31 ARKITFLG-TGSMGLPMARRLCEAGYALQVWNRTP-----AR---AASLAA-----LGATI-------HEQARAAARDAD   89 (320)
T ss_dssp             CSEEEEEC-CTTTHHHHHHHHHHTTCEEEEECSCH-----HH---HHHHHT-----TTCEE-------ESSHHHHHTTCS
T ss_pred             CCEEEEEC-ccHHHHHHHHHHHhCCCeEEEEcCCH-----HH---HHHHHH-----CCCEe-------eCCHHHHHhcCC
Confidence            46899998 69999999999999999999999987     22   222222     12222       235677888999


Q ss_pred             EEEEecc
Q 020104           85 GVLHVAT   91 (331)
Q Consensus        85 ~Vih~a~   91 (331)
                      +||-+..
T Consensus        90 vVi~~vp   96 (320)
T 4dll_A           90 IVVSMLE   96 (320)
T ss_dssp             EEEECCS
T ss_pred             EEEEECC
Confidence            9997653

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=96.71  E-value=0.0063  Score=53.70  Aligned_cols=68  Identities=10%  Similarity=0.080  Sum_probs=51.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      ++++|+|+|+ |.+|+.+++.+.+.|++|++++.++.     .... .         -.-..+..|..|.+.+.++++.+
T Consensus        13 ~~k~IlIlG~-G~~g~~la~aa~~~G~~vi~~d~~~~-----~~~~-~---------~ad~~~~~~~~d~~~l~~~~~~~   76 (389)
T 3q2o_A           13 PGKTIGIIGG-GQLGRMMALAAKEMGYKIAVLDPTKN-----SPCA-Q---------VADIEIVASYDDLKAIQHLAEIS   76 (389)
T ss_dssp             TTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSTT-----CTTT-T---------TCSEEEECCTTCHHHHHHHHHTC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCC-----CchH-H---------hCCceEecCcCCHHHHHHHHHhC
Confidence            4578999995 88999999999999999999987652     1100 0         01134567888888888988889


Q ss_pred             cEEE
Q 020104           84 TGVL   87 (331)
Q Consensus        84 d~Vi   87 (331)
                      |+|.
T Consensus        77 dvI~   80 (389)
T 3q2o_A           77 DVVT   80 (389)
T ss_dssp             SEEE
T ss_pred             CEee
Confidence            9884

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=96.70  E-value=0.012  Score=43.92  Aligned_cols=31  Identities=26%  Similarity=0.447  Sum_probs=27.1

Q ss_pred             CceEEEecCc---chhHHHHHHHHHHCCCeEEEE
Q 020104            5 KGRVCVTGGT---GFIASWLIMRLLDHGYSVTTT   35 (331)
Q Consensus         5 ~~~ilVtGat---G~iG~~l~~~L~~~g~~V~~~   35 (331)
                      .++|.|.|++   |.+|..+++.|.+.||+|+.+
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~V   55 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPV   55 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEE
Confidence            4689999998   899999999999999986544

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=96.69  E-value=0.0026  Score=53.50  Aligned_cols=63  Identities=14%  Similarity=0.011  Sum_probs=48.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+|+|.|.| .|.||+.+++.|...|++|++.+|+..     ..             ..++       ..+++.++++++
T Consensus       121 ~g~tvGIIG-lG~IG~~vA~~l~~~G~~V~~~dr~~~-----~~-------------~~~~-------~~~~l~ell~~a  174 (290)
T 3gvx_A          121 YGKALGILG-YGGIGRRVAHLAKAFGMRVIAYTRSSV-----DQ-------------NVDV-------ISESPADLFRQS  174 (290)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSSCC-----CT-------------TCSE-------ECSSHHHHHHHC
T ss_pred             ecchheeec-cCchhHHHHHHHHhhCcEEEEEecccc-----cc-------------cccc-------ccCChHHHhhcc
Confidence            357999999 699999999999999999999999872     11             0111       224678888899


Q ss_pred             cEEEEeccc
Q 020104           84 TGVLHVATP   92 (331)
Q Consensus        84 d~Vih~a~~   92 (331)
                      |+|+.+...
T Consensus       175 DiV~l~~P~  183 (290)
T 3gvx_A          175 DFVLIAIPL  183 (290)
T ss_dssp             SEEEECCCC
T ss_pred             CeEEEEeec
Confidence            999987754

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=96.67  E-value=0.0026  Score=55.39  Aligned_cols=34  Identities=21%  Similarity=-0.019  Sum_probs=31.1

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      +|+|.|+|+ |.+|+.++..|.+.|++|.+++|++
T Consensus         4 ~mki~iiG~-G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            4 SKTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCeEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            368999995 9999999999999999999999976

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=96.67  E-value=0.0024  Score=57.58  Aligned_cols=116  Identities=14%  Similarity=0.132  Sum_probs=70.6

Q ss_pred             ceEEEecCcchhHHHHHHHHHHC-----CCeEEEEecCCCCcccCCccccccccC-C---CCCCCcEEEEeCCCCCCccH
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDH-----GYSVTTTVRSELDPEHRNSKDLSFLKN-L---PGASERLRIFHADLSHPDGF   76 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~-----g~~V~~~~r~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~D~~~~~~~   76 (331)
                      +||.|+||.+..|..++..|+++     +.+|.+.++++     +..+....+.. .   .....++..  .     .++
T Consensus        29 ~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~-----e~~~~~~~~~~~~l~~~~~~~~I~~--t-----~D~   96 (472)
T 1u8x_X           29 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDK-----ERQDRIAGACDVFIREKAPDIEFAA--T-----TDP   96 (472)
T ss_dssp             EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCH-----HHHHHHHHHHHHHHHHHCTTSEEEE--E-----SCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCH-----HHHHHHHHHHHHHhccCCCCCEEEE--E-----CCH
Confidence            58999998776688899888887     67899999987     22222111110 0   011122222  1     346


Q ss_pred             HHHhcCccEEEEecccCCCCCCChh-------------------hHHHHHHHHHHHHHHHHHHhcCCccEEEEecc
Q 020104           77 DAAIAGCTGVLHVATPVDFEDKEPE-------------------EVITQRAINGTLGILKSCLKSGTVKRVVYTSS  133 (331)
Q Consensus        77 ~~~~~~~d~Vih~a~~~~~~~~~~~-------------------~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS  133 (331)
                      .++++++|+||..++..........                   -.....|+...+.+++.+++..+-..+|.+|-
T Consensus        97 ~eal~~AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TN  172 (472)
T 1u8x_X           97 EEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSN  172 (472)
T ss_dssp             HHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             HHHHcCCCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            6788999999999875321100000                   02255677888899999998873445554443

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=96.66  E-value=0.0025  Score=57.52  Aligned_cols=35  Identities=17%  Similarity=0.230  Sum_probs=32.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHC-CC-eEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDH-GY-SVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~-g~-~V~~~~r~~   39 (331)
                      ++|||.|+| +|++|..++..|++. |+ +|++++|++
T Consensus        17 ~~mkIaVIG-lG~mG~~lA~~la~~~G~~~V~~~D~~~   53 (478)
T 3g79_A           17 PIKKIGVLG-MGYVGIPAAVLFADAPCFEKVLGFQRNS   53 (478)
T ss_dssp             SCCEEEEEC-CSTTHHHHHHHHHHSTTCCEEEEECCCC
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            357899999 699999999999999 99 999999998

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=96.65  E-value=0.0031  Score=54.54  Aligned_cols=74  Identities=15%  Similarity=0.148  Sum_probs=49.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCc---cHHHHh
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPD---GFDAAI   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~---~~~~~~   80 (331)
                      .+++|||+|+ |-+|..+++.+...|.+|++++|++        ++++.++++.     ... ..|..+.+   .+.++.
T Consensus       164 ~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~~--------~~~~~~~~lG-----a~~-~~d~~~~~~~~~~~~~~  228 (339)
T 1rjw_A          164 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGD--------EKLELAKELG-----ADL-VVNPLKEDAAKFMKEKV  228 (339)
T ss_dssp             TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCH--------HHHHHHHHTT-----CSE-EECTTTSCHHHHHHHHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCH--------HHHHHHHHCC-----CCE-EecCCCccHHHHHHHHh
Confidence            3568999999 6699999999999999999999877        2222232221     111 23555432   222222


Q ss_pred             cCccEEEEeccc
Q 020104           81 AGCTGVLHVATP   92 (331)
Q Consensus        81 ~~~d~Vih~a~~   92 (331)
                      .++|+||++++.
T Consensus       229 ~~~d~vid~~g~  240 (339)
T 1rjw_A          229 GGVHAAVVTAVS  240 (339)
T ss_dssp             SSEEEEEESSCC
T ss_pred             CCCCEEEECCCC
Confidence            579999998873

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=96.65  E-value=0.0017  Score=56.34  Aligned_cols=35  Identities=26%  Similarity=0.254  Sum_probs=31.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      .+.+|||+||+|-+|...++.+...|.+|+++ +++
T Consensus       150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~  184 (343)
T 3gaz_A          150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARG  184 (343)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCH
Confidence            35689999999999999999999999999988 655

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=96.63  E-value=0.0063  Score=50.57  Aligned_cols=57  Identities=14%  Similarity=0.116  Sum_probs=47.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+++++|.|++|.+|+.++..|+..|..|+++.|..                                  ..+.+.+..+
T Consensus       160 ~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t----------------------------------~~L~~~~~~A  205 (285)
T 3l07_A          160 EGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT----------------------------------TDLKSHTTKA  205 (285)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC----------------------------------SSHHHHHTTC
T ss_pred             CCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc----------------------------------hhHHHhcccC
Confidence            468999999999999999999999999998876543                                  1467788899


Q ss_pred             cEEEEecccCC
Q 020104           84 TGVLHVATPVD   94 (331)
Q Consensus        84 d~Vih~a~~~~   94 (331)
                      |+||.+.+...
T Consensus       206 DIVI~Avg~p~  216 (285)
T 3l07_A          206 DILIVAVGKPN  216 (285)
T ss_dssp             SEEEECCCCTT
T ss_pred             CEEEECCCCCC
Confidence            99999887543

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=96.63  E-value=0.0084  Score=50.87  Aligned_cols=62  Identities=16%  Similarity=0.170  Sum_probs=47.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+|+|.|.| .|-||+.+++.|...|++|++.+|+.     . .             .       ......++.++++++
T Consensus       123 ~g~~vgIIG-~G~IG~~~A~~l~~~G~~V~~~dr~~-----~-~-------------~-------~~~~~~~l~ell~~a  175 (303)
T 1qp8_A          123 QGEKVAVLG-LGEIGTRVGKILAALGAQVRGFSRTP-----K-E-------------G-------PWRFTNSLEEALREA  175 (303)
T ss_dssp             TTCEEEEES-CSTHHHHHHHHHHHTTCEEEEECSSC-----C-C-------------S-------SSCCBSCSHHHHTTC
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHHHCCCEEEEECCCc-----c-c-------------c-------CcccCCCHHHHHhhC
Confidence            457899998 69999999999999999999999877     1 0             0       011223567888899


Q ss_pred             cEEEEeccc
Q 020104           84 TGVLHVATP   92 (331)
Q Consensus        84 d~Vih~a~~   92 (331)
                      |+|+.+...
T Consensus       176 DvV~l~~P~  184 (303)
T 1qp8_A          176 RAAVCALPL  184 (303)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEEeCcC
Confidence            999987654

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=96.62  E-value=0.00025  Score=59.96  Aligned_cols=34  Identities=15%  Similarity=0.216  Sum_probs=30.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      .+++++|||+ |.+|+.++..|++.| +|++++|+.
T Consensus       127 ~~k~vlV~Ga-GgiG~aia~~L~~~G-~V~v~~r~~  160 (287)
T 1nvt_A          127 KDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTV  160 (287)
T ss_dssp             CSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CCCEEEEECc-hHHHHHHHHHHHHCC-CEEEEECCH
Confidence            3578999998 599999999999999 999999986

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=96.62  E-value=0.008  Score=52.48  Aligned_cols=69  Identities=14%  Similarity=0.157  Sum_probs=48.3

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCC-CCCccHHHHhcCc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADL-SHPDGFDAAIAGC   83 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~~~~   83 (331)
                      ||+|+|+|| |..|..++..+.+.|++|++++.++..+...          .    . -+++..|. .|.+.+....+++
T Consensus         1 MK~I~ilGg-g~~g~~~~~~Ak~~G~~vv~vd~~~~~~~~~----------~----a-D~~~~~~~~~d~~~~~~~~~~~   64 (363)
T 4ffl_A            1 MKTICLVGG-KLQGFEAAYLSKKAGMKVVLVDKNPQALIRN----------Y----A-DEFYCFDVIKEPEKLLELSKRV   64 (363)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCTTCTTTT----------T----S-SEEEECCTTTCHHHHHHHHTSS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCChhHh----------h----C-CEEEECCCCcCHHHHHHHhcCC
Confidence            579999995 8999999999999999999998876211100          0    0 13455554 3555566666789


Q ss_pred             cEEEEe
Q 020104           84 TGVLHV   89 (331)
Q Consensus        84 d~Vih~   89 (331)
                      |.|+-.
T Consensus        65 D~v~~~   70 (363)
T 4ffl_A           65 DAVLPV   70 (363)
T ss_dssp             SEEEEC
T ss_pred             CEEEEC
Confidence            998744

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=96.61  E-value=0.0021  Score=54.53  Aligned_cols=34  Identities=18%  Similarity=0.299  Sum_probs=32.2

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      |+||-++| .|.+|..+++.|++.||+|++.+|++
T Consensus         3 M~kIgfIG-lG~MG~~mA~~L~~~G~~v~v~dr~~   36 (300)
T 3obb_A            3 MKQIAFIG-LGHMGAPMATNLLKAGYLLNVFDLVQ   36 (300)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             cCEEEEee-ehHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            57999999 79999999999999999999999988

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=96.61  E-value=0.0048  Score=50.96  Aligned_cols=56  Identities=14%  Similarity=0.168  Sum_probs=47.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+++++|.|+++.+|+.++..|++.|.+|+++.+..                                  ..+.+.++.+
T Consensus       149 ~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t----------------------------------~~L~~~~~~A  194 (276)
T 3ngx_A          149 HENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT----------------------------------KDIGSMTRSS  194 (276)
T ss_dssp             CSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC----------------------------------SCHHHHHHHS
T ss_pred             CCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc----------------------------------ccHHHhhccC
Confidence            357999999999999999999999999999886543                                  2466778889


Q ss_pred             cEEEEecccC
Q 020104           84 TGVLHVATPV   93 (331)
Q Consensus        84 d~Vih~a~~~   93 (331)
                      |+||.+.+..
T Consensus       195 DIVI~Avg~p  204 (276)
T 3ngx_A          195 KIVVVAVGRP  204 (276)
T ss_dssp             SEEEECSSCT
T ss_pred             CEEEECCCCC
Confidence            9999988753

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=96.59  E-value=0.0041  Score=53.18  Aligned_cols=66  Identities=18%  Similarity=0.279  Sum_probs=46.5

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      +|+|.|+| +|.+|+.++..|.+.|++|.+++|++     +..+.+.   +     .++..       ..+..++++++|
T Consensus        30 ~~~I~iIG-~G~mG~~~a~~l~~~g~~V~~~~~~~-----~~~~~~~---~-----~g~~~-------~~~~~~~~~~~D   88 (316)
T 2uyy_A           30 DKKIGFLG-LGLMGSGIVSNLLKMGHTVTVWNRTA-----EKCDLFI---Q-----EGARL-------GRTPAEVVSTCD   88 (316)
T ss_dssp             SSCEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSG-----GGGHHHH---H-----TTCEE-------CSCHHHHHHHCS
T ss_pred             CCeEEEEc-ccHHHHHHHHHHHhCCCEEEEEeCCH-----HHHHHHH---H-----cCCEE-------cCCHHHHHhcCC
Confidence            36899999 59999999999999999999999987     2222221   1     12221       123556677889


Q ss_pred             EEEEecc
Q 020104           85 GVLHVAT   91 (331)
Q Consensus        85 ~Vih~a~   91 (331)
                      +||-+..
T Consensus        89 vVi~av~   95 (316)
T 2uyy_A           89 ITFACVS   95 (316)
T ss_dssp             EEEECCS
T ss_pred             EEEEeCC
Confidence            9987654

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=96.59  E-value=0.01  Score=51.66  Aligned_cols=33  Identities=18%  Similarity=0.287  Sum_probs=24.4

Q ss_pred             CceEEEecCcchhHHHHHHHHH-HCCC---eEEEEec
Q 020104            5 KGRVCVTGGTGFIASWLIMRLL-DHGY---SVTTTVR   37 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~-~~g~---~V~~~~r   37 (331)
                      |+||.|.||||++|+.|++.|+ ++++   +++.+..
T Consensus         1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~   37 (367)
T 1t4b_A            1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFST   37 (367)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEES
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEe
Confidence            3689999999999999999544 4443   4454444

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=96.58  E-value=0.0042  Score=52.54  Aligned_cols=64  Identities=13%  Similarity=0.115  Sum_probs=44.6

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      ||+|.|+| +|.+|+.+++.|.+.|++|.+++ ++     +..+.+.   +.     ++       .-..+..++++++|
T Consensus         3 ~m~i~iiG-~G~~G~~~a~~l~~~g~~V~~~~-~~-----~~~~~~~---~~-----g~-------~~~~~~~~~~~~~D   60 (295)
T 1yb4_A            3 AMKLGFIG-LGIMGSPMAINLARAGHQLHVTT-IG-----PVADELL---SL-----GA-------VNVETARQVTEFAD   60 (295)
T ss_dssp             -CEEEECC-CSTTHHHHHHHHHHTTCEEEECC-SS-----CCCHHHH---TT-----TC-------BCCSSHHHHHHTCS
T ss_pred             CCEEEEEc-cCHHHHHHHHHHHhCCCEEEEEc-CH-----HHHHHHH---Hc-----CC-------cccCCHHHHHhcCC
Confidence            46899999 69999999999999999999887 65     2222221   11     11       11234666777889


Q ss_pred             EEEEec
Q 020104           85 GVLHVA   90 (331)
Q Consensus        85 ~Vih~a   90 (331)
                      +||-+.
T Consensus        61 ~vi~~v   66 (295)
T 1yb4_A           61 IIFIMV   66 (295)
T ss_dssp             EEEECC
T ss_pred             EEEEEC
Confidence            998765

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.58  E-value=0.0065  Score=54.43  Aligned_cols=80  Identities=18%  Similarity=0.189  Sum_probs=50.1

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEE-E-----eCCCCCCccHHHH
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRI-F-----HADLSHPDGFDAA   79 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~D~~~~~~~~~~   79 (331)
                      .+|.|+| +|++|..++..|++.|++|++.+|++     ++.+.+..- ..+...++++- +     .+.+.--.++.++
T Consensus         9 ~~~~vIG-lG~vG~~~A~~La~~G~~V~~~D~~~-----~kv~~l~~g-~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea   81 (446)
T 4a7p_A            9 VRIAMIG-TGYVGLVSGACFSDFGHEVVCVDKDA-----RKIELLHQN-VMPIYEPGLDALVASNVKAGRLSFTTDLAEG   81 (446)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCS-----TTHHHHTTT-CCSSCCTTHHHHHHHHHHTTCEEEESCHHHH
T ss_pred             eEEEEEc-CCHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHhcC-CCCccCCCHHHHHHhhcccCCEEEECCHHHH
Confidence            4789999 69999999999999999999999998     333333221 00100111100 0     0111112346677


Q ss_pred             hcCccEEEEeccc
Q 020104           80 IAGCTGVLHVATP   92 (331)
Q Consensus        80 ~~~~d~Vih~a~~   92 (331)
                      ++++|+||-+.+.
T Consensus        82 ~~~aDvvii~Vpt   94 (446)
T 4a7p_A           82 VKDADAVFIAVGT   94 (446)
T ss_dssp             HTTCSEEEECCCC
T ss_pred             HhcCCEEEEEcCC
Confidence            8889999987653

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=96.56  E-value=0.0087  Score=51.52  Aligned_cols=94  Identities=19%  Similarity=0.075  Sum_probs=58.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+|+|.|+| .|-||+.+++.|...|++|.+.+|++.     ..             ....       ...++.++++++
T Consensus       170 ~gktiGIIG-lG~IG~~vA~~l~~~G~~V~~~dr~~~-----~~-------------~~~~-------~~~sl~ell~~a  223 (340)
T 4dgs_A          170 KGKRIGVLG-LGQIGRALASRAEAFGMSVRYWNRSTL-----SG-------------VDWI-------AHQSPVDLARDS  223 (340)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSCC-----TT-------------SCCE-------ECSSHHHHHHTC
T ss_pred             cCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEcCCcc-----cc-------------cCce-------ecCCHHHHHhcC
Confidence            357999999 599999999999999999999998872     10             0111       124688899999


Q ss_pred             cEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEeccccee
Q 020104           84 TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAV  137 (331)
Q Consensus        84 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~  137 (331)
                      |+|+-+.......    . ..+      ....++.++.   -.-+|.+|...+.
T Consensus       224 DvVil~vP~t~~t----~-~li------~~~~l~~mk~---gailIN~aRG~vv  263 (340)
T 4dgs_A          224 DVLAVCVAASAAT----Q-NIV------DASLLQALGP---EGIVVNVARGNVV  263 (340)
T ss_dssp             SEEEECC---------------------CHHHHHHTTT---TCEEEECSCC---
T ss_pred             CEEEEeCCCCHHH----H-HHh------hHHHHhcCCC---CCEEEECCCCccc
Confidence            9999776532110    0 111      1233343333   2478888887655

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=96.56  E-value=0.0018  Score=53.75  Aligned_cols=68  Identities=19%  Similarity=0.140  Sum_probs=47.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .||+|.|+| +|.+|+.+++.|.+.|++|.+.+|++     +..+.+..  ..     ++       .-..++.++++++
T Consensus         2 ~~m~i~iiG-~G~mG~~~a~~l~~~g~~v~~~~~~~-----~~~~~~~~--~~-----g~-------~~~~~~~~~~~~~   61 (259)
T 2ahr_A            2 NAMKIGIIG-VGKMASAIIKGLKQTPHELIISGSSL-----ERSKEIAE--QL-----AL-------PYAMSHQDLIDQV   61 (259)
T ss_dssp             -CCEEEEEC-CSHHHHHHHHHHTTSSCEEEEECSSH-----HHHHHHHH--HH-----TC-------CBCSSHHHHHHTC
T ss_pred             CccEEEEEC-CCHHHHHHHHHHHhCCCeEEEECCCH-----HHHHHHHH--Hc-----CC-------EeeCCHHHHHhcC
Confidence            356999999 79999999999999999999998887     22222211  00     11       1123466677789


Q ss_pred             cEEEEecc
Q 020104           84 TGVLHVAT   91 (331)
Q Consensus        84 d~Vih~a~   91 (331)
                      |+||-+..
T Consensus        62 D~Vi~~v~   69 (259)
T 2ahr_A           62 DLVILGIK   69 (259)
T ss_dssp             SEEEECSC
T ss_pred             CEEEEEeC
Confidence            99997754

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=96.55  E-value=0.0068  Score=50.36  Aligned_cols=56  Identities=20%  Similarity=0.172  Sum_probs=47.3

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+++++|.|++|.+|+.++..|+..|..|+++.+..                                  ..+.+.++.+
T Consensus       160 ~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T----------------------------------~~L~~~~~~A  205 (286)
T 4a5o_A          160 YGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT----------------------------------RDLADHVSRA  205 (286)
T ss_dssp             TTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC----------------------------------SCHHHHHHTC
T ss_pred             CCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC----------------------------------cCHHHHhccC
Confidence            468999999999999999999999999999886544                                  1366788899


Q ss_pred             cEEEEecccC
Q 020104           84 TGVLHVATPV   93 (331)
Q Consensus        84 d~Vih~a~~~   93 (331)
                      |+||...+..
T Consensus       206 DIVI~Avg~p  215 (286)
T 4a5o_A          206 DLVVVAAGKP  215 (286)
T ss_dssp             SEEEECCCCT
T ss_pred             CEEEECCCCC
Confidence            9999988754

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=96.55  E-value=0.0024  Score=54.61  Aligned_cols=69  Identities=12%  Similarity=0.071  Sum_probs=46.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      .+|+|.|+| +|.+|..+++.|++.|+ +|++.+|++      ..+..+.+.+     .++..       ..+..+++++
T Consensus        23 ~~~~I~iIG-~G~mG~~~A~~L~~~G~~~V~~~dr~~------~~~~~~~~~~-----~g~~~-------~~~~~e~~~~   83 (312)
T 3qsg_A           23 NAMKLGFIG-FGEAASAIASGLRQAGAIDMAAYDAAS------AESWRPRAEE-----LGVSC-------KASVAEVAGE   83 (312)
T ss_dssp             --CEEEEEC-CSHHHHHHHHHHHHHSCCEEEEECSSC------HHHHHHHHHH-----TTCEE-------CSCHHHHHHH
T ss_pred             CCCEEEEEC-ccHHHHHHHHHHHHCCCCeEEEEcCCC------CHHHHHHHHH-----CCCEE-------eCCHHHHHhc
Confidence            457999999 69999999999999999 999999962      0011122211     12221       2346677788


Q ss_pred             ccEEEEecc
Q 020104           83 CTGVLHVAT   91 (331)
Q Consensus        83 ~d~Vih~a~   91 (331)
                      +|+||-+..
T Consensus        84 aDvVi~~vp   92 (312)
T 3qsg_A           84 CDVIFSLVT   92 (312)
T ss_dssp             CSEEEECSC
T ss_pred             CCEEEEecC
Confidence            999997654

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.55  E-value=0.00071  Score=57.06  Aligned_cols=34  Identities=26%  Similarity=0.336  Sum_probs=31.3

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      +++|.|+|+ |.+|+.++..|++.|++|++.+|++
T Consensus         4 ~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~   37 (283)
T 4e12_A            4 ITNVTVLGT-GVLGSQIAFQTAFHGFAVTAYDINT   37 (283)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            468999985 9999999999999999999999987

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=96.55  E-value=0.0039  Score=53.31  Aligned_cols=35  Identities=17%  Similarity=0.283  Sum_probs=32.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCC--eEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGY--SVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~   39 (331)
                      ++|+|.|+| +|.+|+.+++.|.+.|+  +|++.+|++
T Consensus        32 ~~~kI~IIG-~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           32 SMQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             SCSEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCCEEEEEe-eCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            347899999 79999999999999999  999999987

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=96.54  E-value=0.0022  Score=55.80  Aligned_cols=74  Identities=12%  Similarity=0.088  Sum_probs=51.4

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCC--------------
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADL--------------   70 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~--------------   70 (331)
                      ..+|+|+|+ |-+|...++.+...|.+|++++|++     ...+.+.   ++     +.+++..|.              
T Consensus       184 ~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~-----~~l~~~~---~l-----Ga~~~~l~~~~~~~~gya~~~~~  249 (381)
T 3p2y_A          184 PASALVLGV-GVAGLQALATAKRLGAKTTGYDVRP-----EVAEQVR---SV-----GAQWLDLGIDAAGEGGYARELSE  249 (381)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSG-----GGHHHHH---HT-----TCEECCCC-------------CH
T ss_pred             CCEEEEECc-hHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHH---Hc-----CCeEEeccccccccccchhhhhH
Confidence            468999996 9999999999999999999999987     3322222   21     223332221              


Q ss_pred             ----CCCccHHHHhcCccEEEEeccc
Q 020104           71 ----SHPDGFDAAIAGCTGVLHVATP   92 (331)
Q Consensus        71 ----~~~~~~~~~~~~~d~Vih~a~~   92 (331)
                          .+.+.+.++++++|+||.++..
T Consensus       250 ~~~~~~~~~l~e~l~~aDIVI~tv~i  275 (381)
T 3p2y_A          250 AERAQQQQALEDAITKFDIVITTALV  275 (381)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred             HHHhhhHHHHHHHHhcCCEEEECCCC
Confidence                0123567788899999988643

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=96.53  E-value=0.0064  Score=50.93  Aligned_cols=56  Identities=14%  Similarity=0.112  Sum_probs=47.3

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHH--HHhc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFD--AAIA   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~--~~~~   81 (331)
                      .+++++|.|++|.+|+.++..|++.|..|+++.|..                     .             ++.  +.++
T Consensus       164 ~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T---------------------~-------------~l~l~~~~~  209 (300)
T 4a26_A          164 AGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGT---------------------S-------------TEDMIDYLR  209 (300)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTS---------------------C-------------HHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCC---------------------C-------------Cchhhhhhc
Confidence            468999999999999999999999999999987755                     1             244  7788


Q ss_pred             CccEEEEecccC
Q 020104           82 GCTGVLHVATPV   93 (331)
Q Consensus        82 ~~d~Vih~a~~~   93 (331)
                      .+|+||.+.+..
T Consensus       210 ~ADIVI~Avg~p  221 (300)
T 4a26_A          210 TADIVIAAMGQP  221 (300)
T ss_dssp             TCSEEEECSCCT
T ss_pred             cCCEEEECCCCC
Confidence            999999988754

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=96.51  E-value=0.0012  Score=55.17  Aligned_cols=35  Identities=17%  Similarity=0.213  Sum_probs=32.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      ..++++|+|+ |.+|+.++..|++.|.+|++.+|+.
T Consensus       118 ~~~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          118 PNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             TTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3578999997 7799999999999999999999987

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=96.50  E-value=0.0024  Score=54.40  Aligned_cols=66  Identities=21%  Similarity=0.222  Sum_probs=48.1

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      +|+|.|+| .|.+|+.+++.|++.|++|++.+|++     +..+.+.   +.     ++.       ...+..++++++|
T Consensus         9 ~~~IgiIG-~G~mG~~~A~~l~~~G~~V~~~dr~~-----~~~~~~~---~~-----g~~-------~~~~~~e~~~~aD   67 (306)
T 3l6d_A            9 EFDVSVIG-LGAMGTIMAQVLLKQGKRVAIWNRSP-----GKAAALV---AA-----GAH-------LCESVKAALSASP   67 (306)
T ss_dssp             SCSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSH-----HHHHHHH---HH-----TCE-------ECSSHHHHHHHSS
T ss_pred             CCeEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHH---HC-----CCe-------ecCCHHHHHhcCC
Confidence            56899998 69999999999999999999999987     2222221   11     111       1245677788899


Q ss_pred             EEEEecc
Q 020104           85 GVLHVAT   91 (331)
Q Consensus        85 ~Vih~a~   91 (331)
                      +||-+..
T Consensus        68 vVi~~vp   74 (306)
T 3l6d_A           68 ATIFVLL   74 (306)
T ss_dssp             EEEECCS
T ss_pred             EEEEEeC
Confidence            9997654

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=96.49  E-value=0.0084  Score=51.32  Aligned_cols=66  Identities=14%  Similarity=0.103  Sum_probs=48.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+++|.|.| .|-||+.+++.|...|++|++.+|++.     ..+..          .  ..+.     ..++.++++++
T Consensus       136 ~gktvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~-----~~~~~----------~--~~~~-----~~~l~ell~~a  192 (324)
T 3evt_A          136 TGQQLLIYG-TGQIGQSLAAKASALGMHVIGVNTTGH-----PADHF----------H--ETVA-----FTATADALATA  192 (324)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSCC-----CCTTC----------S--EEEE-----GGGCHHHHHHC
T ss_pred             cCCeEEEEC-cCHHHHHHHHHHHhCCCEEEEECCCcc-----hhHhH----------h--hccc-----cCCHHHHHhhC
Confidence            357899999 699999999999999999999999872     11110          0  1111     23567788889


Q ss_pred             cEEEEeccc
Q 020104           84 TGVLHVATP   92 (331)
Q Consensus        84 d~Vih~a~~   92 (331)
                      |+|+.+...
T Consensus       193 DvV~l~lPl  201 (324)
T 3evt_A          193 NFIVNALPL  201 (324)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEEcCCC
Confidence            999877643

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=96.49  E-value=0.0036  Score=54.50  Aligned_cols=34  Identities=15%  Similarity=0.141  Sum_probs=31.6

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      +|+|.|+| .|.+|..+++.|++.|++|.+.+|++
T Consensus        22 ~mkIgiIG-lG~mG~~~A~~L~~~G~~V~v~dr~~   55 (358)
T 4e21_A           22 SMQIGMIG-LGRMGADMVRRLRKGGHECVVYDLNV   55 (358)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEEC-chHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            36899999 79999999999999999999999987

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=96.48  E-value=0.0053  Score=53.95  Aligned_cols=34  Identities=21%  Similarity=0.185  Sum_probs=31.6

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      ..+|+|+|+ |-+|...++.+...|.+|+++++++
T Consensus       190 ~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~  223 (405)
T 4dio_A          190 AAKIFVMGA-GVAGLQAIATARRLGAVVSATDVRP  223 (405)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSST
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            468999996 9999999999999999999999988

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=96.48  E-value=0.008  Score=50.54  Aligned_cols=33  Identities=21%  Similarity=0.296  Sum_probs=30.9

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      |+|.|.|+ |.+|+.++..|++.|++|++++|++
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~~g~~V~~~~r~~   33 (291)
T 1ks9_A            1 MKITVLGC-GALGQLWLTALCKQGHEVQGWLRVP   33 (291)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCCCEEEEEcCc
Confidence            47999996 9999999999999999999999987

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=96.47  E-value=0.0035  Score=51.51  Aligned_cols=35  Identities=29%  Similarity=0.318  Sum_probs=31.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      .+|+|.|+| +|.+|+.+++.|++.|++|++.+|++
T Consensus        18 ~~~kIgiIG-~G~mG~alA~~L~~~G~~V~~~~r~~   52 (245)
T 3dtt_A           18 QGMKIAVLG-TGTVGRTMAGALADLGHEVTIGTRDP   52 (245)
T ss_dssp             -CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            457899998 79999999999999999999999987

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=96.47  E-value=0.0011  Score=59.04  Aligned_cols=34  Identities=12%  Similarity=0.122  Sum_probs=30.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      .+|+|.|+| +|++|..++..|++ |++|++++|++
T Consensus        35 ~~mkIaVIG-lG~mG~~lA~~La~-G~~V~~~D~~~   68 (432)
T 3pid_A           35 EFMKITISG-TGYVGLSNGVLIAQ-NHEVVALDIVQ   68 (432)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHT-TSEEEEECSCH
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHc-CCeEEEEecCH
Confidence            356899999 69999999999887 99999999987

>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*

Probab=96.47  E-value=0.0085  Score=53.69  Aligned_cols=73  Identities=10%  Similarity=0.143  Sum_probs=53.0

Q ss_pred             CCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            2 EEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         2 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      ..++|+|||+|+ |.+|..+++.+.+.|++|++++..+.     ... ...         --+.+..|..|.+.+.++++
T Consensus        16 ~~~~~~ili~g~-g~~g~~~~~a~~~~G~~v~~v~~~~~-----~~~-~~~---------ad~~~~~~~~d~~~l~~~~~   79 (433)
T 2dwc_A           16 TDSAQKILLLGS-GELGKEIAIEAQRLGVEVVAVDRYAN-----APA-MQV---------AHRSYVGNMMDKDFLWSVVE   79 (433)
T ss_dssp             STTCCEEEEESC-SHHHHHHHHHHHHTTCEEEEEESSTT-----CHH-HHH---------SSEEEESCTTCHHHHHHHHH
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCC-----Chh-hhh---------cceEEECCCCCHHHHHHHHH
Confidence            334679999996 88999999999999999999987762     111 110         01345678888877777774


Q ss_pred             --CccEEEEec
Q 020104           82 --GCTGVLHVA   90 (331)
Q Consensus        82 --~~d~Vih~a   90 (331)
                        ++|.|+...
T Consensus        80 ~~~~d~V~~~~   90 (433)
T 2dwc_A           80 REKPDAIIPEI   90 (433)
T ss_dssp             HHCCSEEEECS
T ss_pred             HcCCCEEEECc
Confidence              799998643

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=96.46  E-value=0.0095  Score=51.58  Aligned_cols=68  Identities=13%  Similarity=0.166  Sum_probs=49.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+|+|.|.| .|-||+.+++.|...|++|.+.+|++     ...+....        .+++.       .+++.++++++
T Consensus       163 ~gktvGIIG-~G~IG~~vA~~l~~~G~~V~~~dr~~-----~~~~~~~~--------~g~~~-------~~~l~ell~~a  221 (351)
T 3jtm_A          163 EGKTIGTVG-AGRIGKLLLQRLKPFGCNLLYHDRLQ-----MAPELEKE--------TGAKF-------VEDLNEMLPKC  221 (351)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGGGCCEEEEECSSC-----CCHHHHHH--------HCCEE-------CSCHHHHGGGC
T ss_pred             cCCEEeEEE-eCHHHHHHHHHHHHCCCEEEEeCCCc-----cCHHHHHh--------CCCeE-------cCCHHHHHhcC
Confidence            357999999 69999999999999999999999876     22222111        11221       14578889999


Q ss_pred             cEEEEeccc
Q 020104           84 TGVLHVATP   92 (331)
Q Consensus        84 d~Vih~a~~   92 (331)
                      |+|+.+...
T Consensus       222 DvV~l~~Pl  230 (351)
T 3jtm_A          222 DVIVINMPL  230 (351)
T ss_dssp             SEEEECSCC
T ss_pred             CEEEECCCC
Confidence            999987754

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=96.45  E-value=0.0017  Score=53.46  Aligned_cols=66  Identities=11%  Similarity=0.108  Sum_probs=46.3

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC----eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY----SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~----~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      +|||.|+| +|.+|+.+++.|++.|+    +|++.+|++     +..+.+..  +.     ++..       ..+..+++
T Consensus         2 ~~~i~iIG-~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~-----~~~~~~~~--~~-----g~~~-------~~~~~e~~   61 (247)
T 3gt0_A            2 DKQIGFIG-CGNMGMAMIGGMINKNIVSSNQIICSDLNT-----ANLKNASE--KY-----GLTT-------TTDNNEVA   61 (247)
T ss_dssp             CCCEEEEC-CSHHHHHHHHHHHHTTSSCGGGEEEECSCH-----HHHHHHHH--HH-----CCEE-------CSCHHHHH
T ss_pred             CCeEEEEC-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCH-----HHHHHHHH--Hh-----CCEE-------eCChHHHH
Confidence            47899999 79999999999999998    999999987     22222211  00     1221       23455667


Q ss_pred             cCccEEEEec
Q 020104           81 AGCTGVLHVA   90 (331)
Q Consensus        81 ~~~d~Vih~a   90 (331)
                      +++|+||-+.
T Consensus        62 ~~aDvVilav   71 (247)
T 3gt0_A           62 KNADILILSI   71 (247)
T ss_dssp             HHCSEEEECS
T ss_pred             HhCCEEEEEe
Confidence            7789988765

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.45  E-value=0.0053  Score=52.13  Aligned_cols=70  Identities=17%  Similarity=0.202  Sum_probs=50.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+++|+|+|+ |-+|+.+++.|...|.+|++.+|+.     ...+.   +.+.     +++.+     +..++.++++++
T Consensus       156 ~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~d~~~-----~~~~~---~~~~-----g~~~~-----~~~~l~~~l~~a  216 (300)
T 2rir_A          156 HGSQVAVLGL-GRTGMTIARTFAALGANVKVGARSS-----AHLAR---ITEM-----GLVPF-----HTDELKEHVKDI  216 (300)
T ss_dssp             TTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSH-----HHHHH---HHHT-----TCEEE-----EGGGHHHHSTTC
T ss_pred             CCCEEEEEcc-cHHHHHHHHHHHHCCCEEEEEECCH-----HHHHH---HHHC-----CCeEE-----chhhHHHHhhCC
Confidence            4579999995 9999999999999999999999986     22111   1111     22322     124577888899


Q ss_pred             cEEEEeccc
Q 020104           84 TGVLHVATP   92 (331)
Q Consensus        84 d~Vih~a~~   92 (331)
                      |+||.+...
T Consensus       217 DvVi~~~p~  225 (300)
T 2rir_A          217 DICINTIPS  225 (300)
T ss_dssp             SEEEECCSS
T ss_pred             CEEEECCCh
Confidence            999998764

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=96.44  E-value=0.0078  Score=52.84  Aligned_cols=74  Identities=14%  Similarity=0.084  Sum_probs=48.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh--c
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI--A   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~--~   81 (331)
                      .+.+|||+||+|-+|...++.+...|.+|+++++ +     +.   ++.++++.     ... ..|..+.+...++.  .
T Consensus       183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~-~-----~~---~~~~~~lG-----a~~-v~~~~~~~~~~~~~~~~  247 (375)
T 2vn8_A          183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCS-Q-----DA---SELVRKLG-----ADD-VIDYKSGSVEEQLKSLK  247 (375)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC-G-----GG---HHHHHHTT-----CSE-EEETTSSCHHHHHHTSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeC-h-----HH---HHHHHHcC-----CCE-EEECCchHHHHHHhhcC
Confidence            3568999999999999999999999999998873 3     12   22222221     111 12444433222332  3


Q ss_pred             CccEEEEeccc
Q 020104           82 GCTGVLHVATP   92 (331)
Q Consensus        82 ~~d~Vih~a~~   92 (331)
                      ++|+||++++.
T Consensus       248 g~D~vid~~g~  258 (375)
T 2vn8_A          248 PFDFILDNVGG  258 (375)
T ss_dssp             CBSEEEESSCT
T ss_pred             CCCEEEECCCC
Confidence            79999999874

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=96.43  E-value=0.0026  Score=55.19  Aligned_cols=36  Identities=19%  Similarity=0.154  Sum_probs=32.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      .+.+|||+||+|-+|...++.+...|.+|+++++++
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~  185 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRN  185 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            457899999999999999999999999999998876

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=96.43  E-value=0.0052  Score=49.14  Aligned_cols=35  Identities=14%  Similarity=0.059  Sum_probs=30.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      .+|+|.|+| +|.+|+.++..|.+.|++|.+.+|++
T Consensus        18 ~~~~I~iiG-~G~mG~~la~~l~~~g~~V~~~~~~~   52 (209)
T 2raf_A           18 QGMEITIFG-KGNMGQAIGHNFEIAGHEVTYYGSKD   52 (209)
T ss_dssp             --CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECTTC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            357899999 79999999999999999999998876

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=96.43  E-value=0.011  Score=50.95  Aligned_cols=94  Identities=16%  Similarity=0.069  Sum_probs=61.8

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      +++|.|.| .|-||+.+++.|...|++|++.+|+..     .  ...         ..+.+        .++.++++++|
T Consensus       148 gktvgIiG-lG~IG~~vA~~l~~~G~~V~~~d~~~~-----~--~~~---------~~~~~--------~~l~ell~~aD  202 (343)
T 2yq5_A          148 NLTVGLIG-VGHIGSAVAEIFSAMGAKVIAYDVAYN-----P--EFE---------PFLTY--------TDFDTVLKEAD  202 (343)
T ss_dssp             GSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCC-----G--GGT---------TTCEE--------CCHHHHHHHCS
T ss_pred             CCeEEEEe-cCHHHHHHHHHHhhCCCEEEEECCChh-----h--hhh---------ccccc--------cCHHHHHhcCC
Confidence            57899999 699999999999999999999999872     1  000         11222        25788888999


Q ss_pred             EEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEeccccee
Q 020104           85 GVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAV  137 (331)
Q Consensus        85 ~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~  137 (331)
                      +|+.+........     ..+.      ...+..++.   -.-+|.+|...+.
T Consensus       203 vV~l~~Plt~~t~-----~li~------~~~l~~mk~---gailIN~aRg~~v  241 (343)
T 2yq5_A          203 IVSLHTPLFPSTE-----NMIG------EKQLKEMKK---SAYLINCARGELV  241 (343)
T ss_dssp             EEEECCCCCTTTT-----TCBC------HHHHHHSCT---TCEEEECSCGGGB
T ss_pred             EEEEcCCCCHHHH-----HHhh------HHHHhhCCC---CcEEEECCCChhh
Confidence            9998776432111     1111      123333333   2478888876654

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=96.42  E-value=0.0046  Score=55.84  Aligned_cols=36  Identities=22%  Similarity=0.204  Sum_probs=32.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      .+.+|||+||+|-+|...++.+...|.+|+++++++
T Consensus       228 ~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~  263 (456)
T 3krt_A          228 QGDNVLIWGASGGLGSYATQFALAGGANPICVVSSP  263 (456)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCH
Confidence            356899999999999999999999999999998876

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=96.41  E-value=0.0089  Score=51.40  Aligned_cols=63  Identities=13%  Similarity=0.045  Sum_probs=47.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+|+|.|+| .|.||+.+++.|...|++|++.+|+..     ..             .++..       ..++.++++++
T Consensus       163 ~g~~vgIIG-~G~iG~~vA~~l~~~G~~V~~~dr~~~-----~~-------------~g~~~-------~~~l~ell~~a  216 (333)
T 3ba1_A          163 SGKRVGIIG-LGRIGLAVAERAEAFDCPISYFSRSKK-----PN-------------TNYTY-------YGSVVELASNS  216 (333)
T ss_dssp             TTCCEEEEC-CSHHHHHHHHHHHTTTCCEEEECSSCC-----TT-------------CCSEE-------ESCHHHHHHTC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEECCCch-----hc-------------cCcee-------cCCHHHHHhcC
Confidence            357899999 599999999999999999999998872     10             01111       13467788899


Q ss_pred             cEEEEeccc
Q 020104           84 TGVLHVATP   92 (331)
Q Consensus        84 d~Vih~a~~   92 (331)
                      |+|+-+...
T Consensus       217 DvVil~vP~  225 (333)
T 3ba1_A          217 DILVVACPL  225 (333)
T ss_dssp             SEEEECSCC
T ss_pred             CEEEEecCC
Confidence            999987654

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=96.40  E-value=0.0073  Score=45.19  Aligned_cols=34  Identities=21%  Similarity=0.345  Sum_probs=29.0

Q ss_pred             CceEEEecCc---chhHHHHHHHHHHCCCeEEEEecC
Q 020104            5 KGRVCVTGGT---GFIASWLIMRLLDHGYSVTTTVRS   38 (331)
Q Consensus         5 ~~~ilVtGat---G~iG~~l~~~L~~~g~~V~~~~r~   38 (331)
                      .++|.|.|++   |-+|..+++.|.+.|++|+.++++
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~   49 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPK   49 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCc
Confidence            4679999998   899999999999999997766544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	331
d1y1pa1	342	c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo	1e-39
d2b69a1	312	c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1	1e-36
d1kewa_	361	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	3e-31
d1r6da_	322	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	8e-31
d1db3a_	357	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric	3e-26
d2c5aa1	363	c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T	8e-25
d1rpna_	321	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo	2e-24
d1e6ua_	315	c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras	4e-22
d1t2aa_	347	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H	3e-21
d1oc2a_	346	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	5e-20
d1qyda_	312	c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {	1e-19
d1n7ha_	339	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr	7e-17
d1orra_	338	c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella	8e-17
d1udca_	338	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	1e-16
d1qyca_	307	c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta	1e-16
d1sb8a_	341	c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W	4e-16
d1hdoa_	205	c.2.1.2 (A:) Biliverdin IX beta reductase {Human (	3e-15
d2q46a1	252	c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (	8e-15
d1xgka_	350	c.2.1.2 (A:) Negative transcriptional regulator Nm	1e-13
d1z45a2	347	c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep	2e-12
d1ek6a_	346	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	5e-12
d1i24a_	393	c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1	7e-12
d1gy8a_	383	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	3e-11
d1rkxa_	356	c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia	4e-08
d2bkaa1	232	c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {H	5e-08
d1vl0a_	281	c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD	2e-07
d2blla1	342	c.2.1.2 (A:316-657) Polymyxin resistance protein A	7e-06
d1eq2a_	307	c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimer	1e-05
d2a35a1	212	c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse	1e-05
d2a35a1	212	c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse	0.001
d1xhla_	274	c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorh	2e-05
d1xg5a_	257	c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC41	3e-05
d1spxa_	264	c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nemato	4e-05
d1n2sa_	298	c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reduct	7e-05
d2ae2a_	259	c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu	8e-05
d1yxma1	297	c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA re	8e-05
d2ew8a1	247	c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenas	1e-04
d1pr9a_	244	c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapie	2e-04
d1fmca_	255	c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase	3e-04
d1xq1a_	259	c.2.1.2 (A:) Tropinone reductase {Thale cress (Ara	4e-04
d1g0oa_	272	c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase	5e-04
d1bdba_	276	c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehy	5e-04
d1cyda_	242	c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul	6e-04
d2a4ka1	241	c.2.1.2 (A:2-242) beta-keto acyl carrier protein r	0.001
d1xkqa_	272	c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorh	0.002
d2bgka1	268	c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de	0.002
d1dhra_	236	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	0.002
d1ooea_	235	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	0.003
d1ja9a_	259	c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reduc	0.004
d2c07a1	251	c.2.1.2 (A:54-304) beta-keto acyl carrier protein	0.004
d1ydea1	250	c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase	0.004

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

 Score =  140 bits (353), Expect = 1e-39
 Identities = 78/340 (22%), Positives = 124/340 (36%), Gaps = 24/340 (7%)

Query: 1   MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGAS 60
           + EG   V VTG  GF+AS ++ +LL+HGY V  T RS     +     L    +     
Sbjct: 8   LPEGS-LVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLAN-----LQKRWDAKYPG 61

Query: 61  ERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCL 120
                   D+     +D  I G  GV H+A+ V F +K  E V       GTL  L++  
Sbjct: 62  RFETAVVEDMLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAI--GGTLNALRAAA 119

Query: 121 KSGTVKRVVYTSSNAAVFYNDKDVD---------MMDETFWSDVDYIRKLDSWGKSYAIS 171
            + +VKR V TSS  +      +V+          ++    +              YA S
Sbjct: 120 ATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAAS 179

Query: 172 KTLTERAALEFAEEHGL--DLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREE---YG 226
           KT  E AA +F +E+     L  ++P+  +G    P+      S   + L N E      
Sbjct: 180 KTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALA 239

Query: 227 FLLNTSMVHVDDVARAHIFLLEYPDAKGRY-ICSSHTLTIQEMAEFLSAKYPEYPIPTVD 285
            +     V   D+   H+  L  P  + R    ++ T     +       YP    P   
Sbjct: 240 LMPPQYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADF 299

Query: 286 SLAEIEGYRAPGS-SSKKLLDAGFRYNYGIDEMFDEAIQC 324
                +  +   + S + L   G      I+E   + +  
Sbjct: 300 PDQGQDLSKFDTAPSLEILKSLGRPGWRSIEESIKDLVGS 339

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (331), Expect = 1e-36
 Identities = 62/329 (18%), Positives = 121/329 (36%), Gaps = 27/329 (8%)

Query: 5   KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLR 64
           + R+ +TGG GF+ S L  +L+  G+ V T V +      RN +     +N         
Sbjct: 1   RKRILITGGAGFVGSHLTDKLMMDGHEV-TVVDNFFTGRKRNVEHWIGHENF-------- 51

Query: 65  IFHADLSHPDGFDAAIAGCTGVLHVATP--VDFEDKEPEEVITQRAINGTLGILKSCLKS 122
               +L + D  +        + H+A+P         P + + +    GTL +L    + 
Sbjct: 52  ----ELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTL-KTNTIGTLNMLGLAKRV 106

Query: 123 GTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEF 182
           G   R++  S++    Y D +V    E +W  V+ I         Y   K + E     +
Sbjct: 107 G--ARLLLASTSEV--YGDPEVHPQSEDYWGHVNPIGPR----ACYDEGKRVAETMCYAY 158

Query: 183 AEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREE--YGFLLNT-SMVHVDDV 239
            ++ G+++         GP +       V + +   L       YG    T +  +V D+
Sbjct: 159 MKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDL 218

Query: 240 ARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSS 299
               + L+    +    + +    TI E A+ +             S A+ +  +     
Sbjct: 219 VNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDI 278

Query: 300 SKKLLDAGFRYNYGIDEMFDEAIQCCKEK 328
            K  L  G+     ++E  ++AI   +++
Sbjct: 279 KKAKLMLGWEPVVPLEEGLNKAIHYFRKE 307

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

 Score =  118 bits (296), Expect = 3e-31
 Identities = 57/344 (16%), Positives = 114/344 (33%), Gaps = 40/344 (11%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
           ++ +TGG GFI S ++  ++ +       +          + +L  L ++   S R    
Sbjct: 2   KILITGGAGFIGSAVVRHIIKNTQDTVVNIDK-----LTYAGNLESLSDISE-SNRYNFE 55

Query: 67  HADLSHPDGFDAAIAG--CTGVLHVA--TPVDFEDKEPEEVITQRAINGTLGILKSCLKS 122
           HAD+                 V+H+A  + VD     P   I +  I GT  +L+   K 
Sbjct: 56  HADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFI-ETNIVGTYALLEVARKY 114

Query: 123 G--------TVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTL 174
                       R  + S+   V+ +    D ++ +    +       +    Y+ SK  
Sbjct: 115 WSALGEDKKNNFRFHHIST-DEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKAS 173

Query: 175 TERAALEFAEEHGLDLVTLIPSMVVGPF-----ICPKFAGSVRSSLALILGNREEYGFLL 229
           ++     +   +GL  +    S   GP+     + P    +      L +     YG   
Sbjct: 174 SDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPI-----YGKGD 228

Query: 230 NT-SMVHVDDVARAHIFLLEYPDAKGRY-ICSSHTLTIQEMAEFLSAKYPEYPIPTVDSL 287
                ++V+D ARA   ++    A   Y I   +     ++   +     E         
Sbjct: 229 QIRDWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYR 288

Query: 288 AEIE-GYRAPGSSSKKLLDA-------GFRYNYGIDEMFDEAIQ 323
            +I      PG   +  +DA       G++     +    + ++
Sbjct: 289 EQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVE 332

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

 Score =  116 bits (291), Expect = 8e-31
 Identities = 67/330 (20%), Positives = 112/330 (33%), Gaps = 27/330 (8%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
           R+ VTGG GFI S  + +LL   Y         +      + + + L  +  A  RLR  
Sbjct: 2   RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVD-ADPRLRFV 60

Query: 67  HADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRA-INGTLGILKSCLKSGTV 125
           H D+         + G   ++H A     +       +     + GT  +L+  + +G  
Sbjct: 61  HGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGV- 119

Query: 126 KRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE 185
            RVV+ S+N    Y   D     E+   + +           YA SK  ++  A  +   
Sbjct: 120 GRVVHVSTNQV--YGSIDSGSWTESSPLEPNSP---------YAASKAGSDLVARAYHRT 168

Query: 186 HGLDLVTLIPSMVVGP-----FICPKFAGSVRSSLALILGNREEYGFLLNT-SMVHVDDV 239
           +GLD+         GP      + P F  ++     L L     YG   N    VH DD 
Sbjct: 169 YGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPL-----YGDGANVREWVHTDDH 223

Query: 240 ARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGY--RAPG 297
            R    +L    A   Y               +          +V  +A+ +G+  R   
Sbjct: 224 CRGIALVLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSL 283

Query: 298 SSSKKLLDAGFRYNYGIDEMFDEAIQCCKE 327
              K   + G+R      +     ++  +E
Sbjct: 284 DGGKIERELGYRPQVSFADGLARTVRWYRE 313

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

 Score =  104 bits (260), Expect = 3e-26
 Identities = 48/276 (17%), Positives = 86/276 (31%), Gaps = 27/276 (9%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
              +TG TG   S+L   LL+ GY V    R            +   ++    + +  + 
Sbjct: 3   VALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHI--YQDPHTCNPKFHLH 60

Query: 67  HADLSHPDGFDAAIAGC----TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKS 122
           + DLS        +          L   + V    + PE         GTL +L++    
Sbjct: 61  YGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTA-DVDAMGTLRLLEAIRFL 119

Query: 123 GT--VKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKS-YAISKTLTERAA 179
           G     R    S++    Y         ET               +S YA++K       
Sbjct: 120 GLEKKTRFYQASTSEL--YGLVQEIPQKETTPFY----------PRSPYAVAKLYAYWIT 167

Query: 180 LEFAEEHGLDLVTLIPSMVVGPFICPKFAGS-VRSSLALILGNREEYGFLLNT----SMV 234
           + + E +G+     I      P     F    +  ++A I    E   +L N        
Sbjct: 168 VNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWG 227

Query: 235 HVDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAE 270
           H  D  +    +L+    +   I +    ++++  E
Sbjct: 228 HAKDYVKMQWMMLQQEQPEDFVIATGVQYSVRQFVE 263

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  100 bits (250), Expect = 8e-25
 Identities = 58/330 (17%), Positives = 108/330 (32%), Gaps = 29/330 (8%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
           ++ +TG  GFIAS +  RL   G+ V        D      K+    +++          
Sbjct: 17  KISITGAGGFIASHIARRLKHEGHYVIA-----SD----WKKNEHMTEDMFCD----EFH 63

Query: 67  HADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAIN--GTLGILKSCLKSGT 124
             DL   +       G   V ++A  +                N   +  ++++   +G 
Sbjct: 64  LVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARING- 122

Query: 125 VKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAE 184
           +KR  Y SS        +          SD       D    ++ + K  TE     + +
Sbjct: 123 IKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQD----AFGLEKLATEELCKHYNK 178

Query: 185 EHGLDLVTLIPSMVVGP-----FICPKFAGSVRSSLALILGNREEYGFLLNT-SMVHVDD 238
           + G++        + GP         K   +            E +G  L T S   +D+
Sbjct: 179 DFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDE 238

Query: 239 VARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKY-PEYPIPTVDSLAEIEGYRAPG 297
                + L +    +   I S   +++ EMAE + +    + PI  +     + G  +  
Sbjct: 239 CVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEGVRGRNSDN 298

Query: 298 SSSKKLLDAGFRYNYGIDEMFDEAIQCCKE 327
           +  K+ L  G+  N  + E         KE
Sbjct: 299 NLIKEKL--GWAPNMRLKEGLRITYFWIKE 326

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 98.9 bits (245), Expect = 2e-24
 Identities = 50/331 (15%), Positives = 102/331 (30%), Gaps = 34/331 (10%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
              VTG TG   ++L   LL+ GY V   V           ++L    +       ++  
Sbjct: 2   SALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGD-------IQYE 54

Query: 67  HADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLG---ILKSCLKSG 123
             D++       A+                            +   LG   +L++  +  
Sbjct: 55  DGDMADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFS 114

Query: 124 TVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFA 183
              R    S+  +  +     +  DE                  Y ++K       + + 
Sbjct: 115 PETRFYQAST--SEMFGLIQAERQDENTPFY---------PRSPYGVAKLYGHWITVNYR 163

Query: 184 EEHGLDLVTLIPSMVVGPFICPKFAGS--VRSSLALILGNREE--YGFLLNT-SMVHVDD 238
           E  GL   + I      P    +F       +   + LG ++E   G +          D
Sbjct: 164 ESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGD 223

Query: 239 VARAHIFLLEYPDAKGRYICSSHTLTI----QEMAEFLSAKYPEYPI--PTVDSLAEIEG 292
              A   +L+   A    + +  T T+    Q   E +   Y ++    P     AE++ 
Sbjct: 224 YVEAMWLMLQQDKADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDV 283

Query: 293 YRAPGSSSKKLLDAGFRYNYGIDEMFDEAIQ 323
                + ++++L  G++    +DE+    ++
Sbjct: 284 LLGNPAKAQRVL--GWKPRTSLDELIRMMVE 312

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

 Score = 92.6 bits (229), Expect = 4e-22
 Identities = 48/339 (14%), Positives = 106/339 (31%), Gaps = 51/339 (15%)

Query: 5   KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTV-RSELDPEHRNSKDLSFLKNLPGASERL 63
           K RV + G  G + S +  +L   G        R EL+    +S+ +             
Sbjct: 2   KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELN--LLDSRAV------------- 46

Query: 64  RIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSG 123
                D    +  D        V          +         + +     I+ +  ++ 
Sbjct: 47  ----HDFFASERIDQVYLAAAKVGG-----IVANNTYPADFIYQNMMIESNIIHAAHQND 97

Query: 124 TVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFA 183
            V ++++  S+    Y       M E+          L+   + YAI+K    +    + 
Sbjct: 98  -VNKLLFLGSSCI--YPKLAKQPMAESEL----LQGTLEPTNEPYAIAKIAGIKLCESYN 150

Query: 184 EEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAH 243
            ++G D  +++P+ + GP      + S      L   +        +  +       R  
Sbjct: 151 RQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREF 210

Query: 244 IFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPT-----VDSLAEIEGYRA--- 295
           + + +   A    +  +H + ++     LS       +         ++A++ GY+    
Sbjct: 211 LHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVV 270

Query: 296 -----PGSSSKKLLDA------GFRYNYGIDEMFDEAIQ 323
                P  + +KLLD       G+ +   ++       Q
Sbjct: 271 FDASKPDGTPRKLLDVTRLHQLGWYHEISLEAGLASTYQ 309

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.8 bits (224), Expect = 3e-21
 Identities = 54/346 (15%), Positives = 90/346 (26%), Gaps = 45/346 (13%)

Query: 10  VTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHAD 69
           +TG TG   S+L   LL+ GY V   VR          + L            +++ + D
Sbjct: 6   ITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQA-HIEGNMKLHYGD 64

Query: 70  LSHPDGFDAAIAGCTGVLH----VATPVDFEDKEPEEVITQRAINGTLGILKSCLKSG-- 123
           L+        I              + V       E         GTL +L +    G  
Sbjct: 65  LTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTA-DVDGVGTLRLLDAVKTCGLI 123

Query: 124 TVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFA 183
              +    S++    Y         ET                 Y  +K       + F 
Sbjct: 124 NSVKFYQASTSEL--YGKVQEIPQKETTPFYPRSP---------YGAAKLYAYWIVVNFR 172

Query: 184 EEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNT-----SMVHVDD 238
           E + L  V  I      P     F     S     +   +   F L          H  D
Sbjct: 173 EAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKD 232

Query: 239 VARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEI-------- 290
              A   +L+  + +   I +    +++E  E       +  +    +  E+        
Sbjct: 233 YVEAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGK 292

Query: 291 ------EGYRAPGSSSKKLLDA-------GFRYNYGIDEMFDEAIQ 323
                   Y  P        D         ++     DE+  E + 
Sbjct: 293 VHVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVH 338

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

 Score = 87.0 bits (214), Expect = 5e-20
 Identities = 57/326 (17%), Positives = 108/326 (33%), Gaps = 20/326 (6%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
            + VTGG GFI S  +  + ++   V  TV  +L      + + + L+ + G  +R+ + 
Sbjct: 4   NIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLT----YAGNKANLEAILG--DRVELV 57

Query: 67  HADLSHPDGFDAAIAGCTGVLHVATP--VDFEDKEPEEVITQRAINGTLGILKSCLKSGT 124
             D++  +  D   A    ++H A     D    +P   I      GT  +L++  K   
Sbjct: 58  VGDIADAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHT-NFIGTYTLLEAARKYDI 116

Query: 125 VKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAE 184
               V T          +D+    E            +     Y+ +K  ++     +  
Sbjct: 117 RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSS-PYSSTKAASDLIVKAWVR 175

Query: 185 EHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNT-SMVHVDDVARAH 243
             G+       S   GP+   +     + +  L     + YG   N    +H +D +   
Sbjct: 176 SFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGV 235

Query: 244 IFLLEYPDAKGRYICSSHTLT-----IQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGS 298
             +L        Y+  +         ++ + E +      Y   T D       Y    S
Sbjct: 236 WAILTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVT-DRAGHDLRYAIDAS 294

Query: 299 SSKKLLDAGFRYNY-GIDEMFDEAIQ 323
             +  L  G+   +    E  +E IQ
Sbjct: 295 KLRDEL--GWTPQFTDFSEGLEETIQ 318

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

 Score = 85.6 bits (210), Expect = 1e-19
 Identities = 50/330 (15%), Positives = 94/330 (28%), Gaps = 49/330 (14%)

Query: 3   EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASER 62
           + K RV + GGTG+I   ++   +  G+      R E+       + L + K L      
Sbjct: 1   DKKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQL-----G 55

Query: 63  LRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKS 122
            ++  A L        A+     V+             E++    A            ++
Sbjct: 56  AKLIEASLDDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEA----------IKEA 105

Query: 123 GTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEF 182
           G +KR + +         +  +     TF       R +++    Y              
Sbjct: 106 GNIKRFLPSEFGMDPDIMEHALQPGSITFIDKRKVRRAIEAASIPYTYVS---------- 155

Query: 183 AEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARA 242
                        +M  G F     A      +             +    V  DDV   
Sbjct: 156 ------------SNMFAGYFA-GSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTY 202

Query: 243 HIFLLEYPDAKGR---YICSSHTLTIQEMAEFLSA----KYPEYPIPTVDSLAEIEGYRA 295
            I  ++ P    +        + L+ +E+ +           +  I + D LA+++    
Sbjct: 203 TIKSIDDPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYISSQDFLADMKDKSY 262

Query: 296 PGSSSKKLLDA----GFRYNYGIDEMFDEA 321
                +  L      G  YN+ I     EA
Sbjct: 263 EEKIVRCHLYQIFFRGDLYNFEIGPNAIEA 292

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 77.8 bits (190), Expect = 7e-17
 Identities = 53/351 (15%), Positives = 103/351 (29%), Gaps = 37/351 (10%)

Query: 5   KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLR 64
           +    +TG TG   S+L   LL  GY V   +R   +   +    +    +       ++
Sbjct: 1   RKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVN-KALMK 59

Query: 65  IFHADLSHPDGFDAAIAGCTGVLH----VATPVDFEDKEPEEVITQRAINGTLGILKSCL 120
           + +ADL+        I              + V    + P+      A      +     
Sbjct: 60  LHYADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRS 119

Query: 121 KSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAAL 180
            +    R V      +            ET                 YA SK       +
Sbjct: 120 HTIDSGRTVKYYQAGSSEMFGSTPPPQSETTPFHPRSP---------YAASKCAAHWYTV 170

Query: 181 EFAEEHGLDLVTLIPSMVVGPFICPKFAGS--VRSSLALILGNREE--YGFLLNT-SMVH 235
            + E +GL     I      P     F      R+   + +G + +   G L  +     
Sbjct: 171 NYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGF 230

Query: 236 VDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAE------FLSAKYPEYPIPTVDSLAE 289
             D   A   +L+        + +    T++E  +       L+ K            AE
Sbjct: 231 AGDYVEAMWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAE 290

Query: 290 IEGYRAPGSSSKKLLDAGFRYNYGIDEMFDEAI----------QCCKEKGY 330
           ++  +   S +K++L  G++   G +++    +          +   + GY
Sbjct: 291 VDNLQGDASKAKEVL--GWKPQVGFEKLVKMMVDEDLELAKREKVLVDAGY 339

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

 Score = 77.9 bits (190), Expect = 8e-17
 Identities = 53/343 (15%), Positives = 109/343 (31%), Gaps = 37/343 (10%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
           ++ +TGG GF+ S L    L  G  +             N   LS L N           
Sbjct: 2   KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGN-------FEFV 54

Query: 67  HADLSHPDGFDAAIAGC--TGVLHVA--TPVDFEDKEPEEVITQRAINGTLGILKSCLKS 122
           H D+ + +     I         H+A    +      P     +  + GTL +L++  + 
Sbjct: 55  HGDIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDF-EINVGGTLNLLEAVRQY 113

Query: 123 GTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGK-----SYAISKTLTER 177
            +   ++Y+S+N      ++      ET ++ VD     D   +      Y  SK   ++
Sbjct: 114 NSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQ 173

Query: 178 AALEFAEEHGLDLVTLIPSMVVGPFICPKFAG-----SVRSSLALILGNREEYGFLLNTS 232
             L++A   GL+ V    S + G      +         + ++ +  G  + +    N  
Sbjct: 174 YMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGK 233

Query: 233 MV----HVDDVARAHIFLLEYPDAKG-----RYICSSHTLTIQEMAEFLSAKYPEYPIPT 283
            V    H +D+   +   L                  ++L++ E+ + L   Y    +  
Sbjct: 234 QVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLL-EDYCNIDMRF 292

Query: 284 V---DSLAEIEGYRAPGSSSKKLLDAGFRYNYGIDEMFDEAIQ 323
                  ++   + A        +   +       +   +   
Sbjct: 293 TNLPVRESDQRVFVADIKKITNAI--DWSPKVSAKDGVQKMYD 333

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

 Score = 77.3 bits (189), Expect = 1e-16
 Identities = 63/356 (17%), Positives = 123/356 (34%), Gaps = 53/356 (14%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
           RV VTGG+G+I S   ++LL +G+ V   + +  + +      +  L       +     
Sbjct: 2   RVLVTGGSGYIGSHTCVQLLQNGHDV-IILDNLCNSKRSVLPVIERLGG-----KHPTFV 55

Query: 67  HADLSHPDGFDAAIA--GCTGVLHVA--TPVDFEDKEPEEVITQRAINGTLGILKSCLKS 122
             D+ +       +       V+H A    V    ++P E      +NGTL ++ +   +
Sbjct: 56  EGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYY-DNNVNGTLRLISAMRAA 114

Query: 123 GTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEF 182
             VK  +++SS     Y D+      E+F +              Y  SK + E+   + 
Sbjct: 115 N-VKNFIFSSSATV--YGDQPKIPYVESFPTGTPQS--------PYGKSKLMVEQILTDL 163

Query: 183 AEEHGLDLVTLI-PSMVVGPFICPKFAGSVRSSLALI--------LGNREE---YGFLLN 230
            +      + L+     VG           +     +        +G R+    +G    
Sbjct: 164 QKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYP 223

Query: 231 T-------SMVHVDDVARAHIFLLEYPDAKGRY----ICSSHTLTIQEMAEFLSAKYPEY 279
           T         +HV D+A  H+  +E    K       + +    ++ ++     +K    
Sbjct: 224 TEDGTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAF-SKACGK 282

Query: 280 PIPTV---DSLAEIEGYRAPGSSSKKLLDAGFRYNYGIDEMFDEAIQCCKE--KGY 330
           P+          ++  Y A  S + + L   +R    +DEM  +         +GY
Sbjct: 283 PVNYHFAPRREGDLPAYWADASKADREL--NWRVTRTLDEMAQDTWHWQSRHPQGY 336

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

 Score = 76.7 bits (187), Expect = 1e-16
 Identities = 40/323 (12%), Positives = 80/323 (24%), Gaps = 50/323 (15%)

Query: 5   KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLR 64
           + R+ + G TG+I   +    LD G+     VR      +     L       GA     
Sbjct: 3   RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGA----N 58

Query: 65  IFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGT 124
           I H  +        A+     V+     +  E +       +                  
Sbjct: 59  IVHGSIDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEVG--------------- 103

Query: 125 VKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAE 184
             +  + S       N   V+     F       R +++ G  Y                
Sbjct: 104 TVKRFFPSEFGNDVDNVHAVEPAKSVFEVKAKVRRAIEAEGIPYTYVS------------ 151

Query: 185 EHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHI 244
                      +   G F+  +       +                   V  +D+    I
Sbjct: 152 ----------SNCFAGYFL--RSLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTI 199

Query: 245 FLLEYPDAKGR---YICSSHTLTIQEMAEFLSA----KYPEYPIPTVDSLAEIEGYRAPG 297
             ++ P    +       ++TL++ E+             +  +P  + L  I     P 
Sbjct: 200 KAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEEEVLKLIADTPFPA 259

Query: 298 SSSKKLLDAGFRYNYGIDEMFDE 320
           + S  +  + F      +     
Sbjct: 260 NISIAISHSIFVKGDQTNFEIGP 282

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 75.8 bits (185), Expect = 4e-16
 Identities = 56/334 (16%), Positives = 105/334 (31%), Gaps = 34/334 (10%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
              +TG  GFI S L+  LL     V   + +      RN  ++  L +    S   +  
Sbjct: 18  VWLITGVAGFIGSNLLETLLKLDQKV-VGLDNFATGHQRNLDEVRSLVSEKQWS-NFKFI 75

Query: 67  HADLSHPDGFDAAIAGCTGV--LHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGT 124
             D+ + D  + A AG   V        V     +P        I+G L +L +   +  
Sbjct: 76  QGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSN-ATNIDGFLNMLIAARDAKV 134

Query: 125 VKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAE 184
                  SS+    Y D       E                  YA++K + E  A  F+ 
Sbjct: 135 QSFTYAASSS---TYGDHPGLPKVEDTI---------GKPLSPYAVTKYVNELYADVFSR 182

Query: 185 EHGLDLVTLIPSMVVGPFICPKFAGS--VRSSLALILGNRE--EYGFLLNT-SMVHVDDV 239
            +G   + L    V G    P  A +  +    + ++   +    G    +    ++++ 
Sbjct: 183 CYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENT 242

Query: 240 ARAHIFLLEYPDAKGRYI---CSSHTLTIQEMAEFL-------SAKYPEYPIPTVDSLAE 289
            +A++            +         ++ ++   L          Y   P+       +
Sbjct: 243 VQANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGD 302

Query: 290 IEGYRAPGSSSKKLLDAGFRYNYGIDEMFDEAIQ 323
           +    A  S + KLL  G+   Y +      A+ 
Sbjct: 303 VRHSLADISKAAKLL--GYAPKYDVSAGVALAMP 334

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.2 bits (173), Expect = 3e-15
 Identities = 32/255 (12%), Positives = 66/255 (25%), Gaps = 56/255 (21%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
           ++ + G TG      + + +  GY VT  VR          +                + 
Sbjct: 5   KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPR-------------PAHVV 51

Query: 67  HADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVK 126
             D+      D  +AG   V+ +    +            R I        + +K+  V 
Sbjct: 52  VGDVLQAADVDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNI-------VAAMKAHGVD 104

Query: 127 RVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH 186
           +VV  +S   ++   K    +                                 +   E 
Sbjct: 105 KVVACTSAFLLWDPTKVPPRLQAVTDDH----------------------IRMHKVLRES 142

Query: 187 GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFL 246
           GL  V ++P  +              +    +  +         + ++   D+    +  
Sbjct: 143 GLKYVAVMPPHIGDQP---------LTGAYTVTLDGR-----GPSRVISKHDLGHFMLRC 188

Query: 247 LEYPDAKGRYICSSH 261
           L   +  G     SH
Sbjct: 189 LTTDEYDGHSTYPSH 203

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 71.0 bits (172), Expect = 8e-15
 Identities = 31/272 (11%), Positives = 69/272 (25%), Gaps = 35/272 (12%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
            V VTG +G     +  +L +                    +     + + G ++     
Sbjct: 5   TVLVTGASGRTGQIVYKKLKEGSDKFVAKG---------LVRSAQGKEKIGGEADVFIGD 55

Query: 67  HADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVK 126
             D    +     I     +L  A P      +P +      I       +     G   
Sbjct: 56  ITDADSINPAFQGIDALV-ILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKN 114

Query: 127 RVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH 186
           +              K   +        +          K    +  + +R A ++  + 
Sbjct: 115 Q----------IDAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADS 164

Query: 187 GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFL 246
           G     +    ++               +  +L  +++     +T  V   DVA   I  
Sbjct: 165 GTPYTIIRAGGLLDK----------EGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQA 214

Query: 247 LEYPDAKGRYI-----CSSHTLTIQEMAEFLS 273
           L + +AK +           +   ++     S
Sbjct: 215 LLFEEAKNKAFDLGSKPEGTSTPTKDFKALFS 246

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

 Score = 68.9 bits (167), Expect = 1e-13
 Identities = 44/326 (13%), Positives = 89/326 (27%), Gaps = 51/326 (15%)

Query: 5   KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLR 64
           K  + V G TG   + LI      G+ V   V      +   +++L  + N       + 
Sbjct: 3   KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVH---SLKGLIAEELQAIPN-------VT 52

Query: 65  IFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGT 124
           +F   L +       +     +  + T     D+         A            ++GT
Sbjct: 53  LFQGPLLNNVPLMDTLFEGAHLAFINTTSQAGDEIAIGKDLADA----------AKRAGT 102

Query: 125 VKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAE 184
           ++  +Y+S      Y       M    ++  +Y+R             +    A +    
Sbjct: 103 IQHYIYSSMPDHSLYGPWPAVPMWAPKFTVENYVR--------QLGLPSTFVYAGIYNNN 154

Query: 185 EHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHI 244
              L        ++                L  +                   DV  A +
Sbjct: 155 FTSLPYPLFQMELMPDGTFEWHAPFDPDIPLPWL---------------DAEHDVGPALL 199

Query: 245 FLLEYPDAKG---RYICSSHTLTIQEMAEFLSA----KYPEYPIPTVDSLAEI-EGYRAP 296
            + +    K    R   +  TL+  ++    S     +     +P V+    I  GYR  
Sbjct: 200 QIFKDGPQKWNGHRIALTFETLSPVQVCAAFSRALNRRVTYVQVPKVEIKVNIPVGYREQ 259

Query: 297 GSSSKKLLDAGFRYNYGIDEMFDEAI 322
             + + +        + + E    A 
Sbjct: 260 LEAIEVVFGEHKAPYFPLPEFSRPAA 285

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.1 bits (157), Expect = 2e-12
 Identities = 49/358 (13%), Positives = 103/358 (28%), Gaps = 51/358 (14%)

Query: 8   VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH 67
           V VTGG G+I S  ++ L+++GY       +  +  + +   L  L         +  + 
Sbjct: 4   VLVTGGAGYIGSHTVVELIENGYDC-VVADNLSNSTYDSVARLEVLTK-----HHIPFYE 57

Query: 68  ADLSHPDGFDAAIA--GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTV 125
            DL    G +          V+H A      +     +           +L   ++   V
Sbjct: 58  VDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNV 117

Query: 126 KRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE 185
            + V++SS        +  +M+       +            Y  +K   E    +    
Sbjct: 118 SKFVFSSSATVYGDATRFPNMIPIPEECPLGPT-------NPYGHTKYAIENILNDLYNS 170

Query: 186 HGLDLVTLI----------PSMVVGPFICPKFAGSVRSSLALILGNREE---YGFLLNT- 231
                   I          PS ++G          +     + +G RE+   +G   ++ 
Sbjct: 171 DKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSR 230

Query: 232 SMVHVDDVARAHIFLLEYPDAKGRY--------------ICSSHTLTIQEMAEFLSAKYP 277
               + D          +  A                  + S    T+ E+      K  
Sbjct: 231 DGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAF-CKAS 289

Query: 278 EYPIPTV---DSLAEIEGYRAPGSSSKKLLDAGFRYNYGIDEMFDEAIQCCKE--KGY 330
              +P         ++    A    +K+ L   ++    +++   +  +   E   GY
Sbjct: 290 GIDLPYKVTGRRAGDVLNLTAKPDRAKREL--KWQTELQVEDSCKDLWKWTTENPFGY 345

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.6 bits (153), Expect = 5e-12
 Identities = 52/358 (14%), Positives = 107/358 (29%), Gaps = 51/358 (14%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTT--TVRSELDPEHRNSKDLSFLKNLPGASERLR 64
           +V VTGG G+I S  ++ LL+ GY         +         + L  ++ L G    + 
Sbjct: 4   KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTG--RSVE 61

Query: 65  IFHADLSHPDGFDAAIAGCTGVLHVATP----VDFEDKEPEEVITQRAINGTLGILKSCL 120
               D+             + +  +       V    ++P +              +  L
Sbjct: 62  FEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYY------------RVNL 109

Query: 121 KSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAAL 180
                   +  +             +     +  +D           Y  SK   E    
Sbjct: 110 TGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIR 169

Query: 181 EFAE-EHGLDLVTLIPSMVVGPFICPKFAGS--------VRSSLALILGNREE---YGFL 228
           +  + +   + V L      G                  +     + +G RE    +G  
Sbjct: 170 DLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGND 229

Query: 229 LNT-------SMVHVDDVARAHIFLLEYPDAKGRY----ICSSHTLTIQEMAEFLSAKYP 277
            +T         +HV D+A+ HI  L     +       + +    ++ +M + +  K  
Sbjct: 230 YDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAM-EKAS 288

Query: 278 EYPIPTV---DSLAEIEGYRAPGSSSKKLLDAGFRYNYGIDEMFDEAIQCCKE--KGY 330
              IP         ++    A  S +++ L  G+    G+D M ++  +  K+   G+
Sbjct: 289 GKKIPYKVVARREGDVAACYANPSLAQEEL--GWTAALGLDRMCEDLWRWQKQNPSGF 344

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 63.5 bits (152), Expect = 7e-12
 Identities = 47/371 (12%), Positives = 96/371 (25%), Gaps = 52/371 (14%)

Query: 4   GKGRVCVTGGTGFIASWLIMRLLDHGYSVT------------TTVRSELDPEHRNSKDLS 51
           G  RV V GG G+      + L    Y V                   L P       +S
Sbjct: 1   GS-RVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRIS 59

Query: 52  FLKNLPGASERLRIFHADLSHPDGFDAAIA------GCTGVLHVATPVDFEDKEPEEVIT 105
             K L G  + + ++  D+   +    +                + P    D+       
Sbjct: 60  RWKALTG--KSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQ 117

Query: 106 QRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDV--DYIRKLDS 163
              + GTL +L +  + G    +V   +       + D++    T   +   D +     
Sbjct: 118 HNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQ 177

Query: 164 WGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE 223
               Y +SK           +  G+    L   +V G             +         
Sbjct: 178 ASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFG 237

Query: 224 ------------------EYGFLLNTSMVHVDDVARAHIFLLEYPDAKGRYIC---SSHT 262
                                       + + D  +     +  P   G +      +  
Sbjct: 238 TALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQ 297

Query: 263 LTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPG------SSSKKLLDAGFRYNYGIDE 316
            ++ E+A  ++    +  +        +   R         +   KL++ G   +Y  D 
Sbjct: 298 FSVNELASLVTKAGSKLGLDVKKM--TVPNPRVEAEEHYYNAKHTKLMELGLEPHYLSDS 355

Query: 317 MFDEAIQCCKE 327
           + D  +    +
Sbjct: 356 LLDSLLNFAVQ 366

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

 Score = 61.7 bits (148), Expect = 3e-11
 Identities = 66/368 (17%), Positives = 113/368 (30%), Gaps = 64/368 (17%)

Query: 7   RVCVTGGTGFIASWLIMRLL-DHGYSVT-----TTVRSELDPEHRNSKDLSFLKNLPG-- 58
           RV V GG G+I S  +  LL D  +SV           + D           L+   G  
Sbjct: 4   RVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPK 63

Query: 59  ---ASERLRIFHADLSHPDGFDAAIAGCTGV--LHVATPVDFEDKEPEEVITQRAINGTL 113
              A     +   D+ + D  +        +  +          +   + +     N   
Sbjct: 64  PPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVG 123

Query: 114 GILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKT 173
            +             +  SS+AA+F N     +       D++  +  +S    Y  SK 
Sbjct: 124 ILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESP---YGESKL 180

Query: 174 LTERAALEFAEEHGLDLVTLIPSMVVG------------------PFICPKFAGSVRSSL 215
           + ER   + AE +G+  + L      G                  P I  +    +    
Sbjct: 181 IAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQ 240

Query: 216 AL-------------ILGNREEYGFLLNT-SMVHVDDVARAHIFLLEYPDAKGRY----- 256
            L             I G              VHV D+A AHI  L+Y +  G       
Sbjct: 241 RLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKY 300

Query: 257 -----ICSSHTLTIQEMAEFLSAKYPEYPIPTV---DSLAEIEGYRAPGSSSKKLLDAGF 308
                + +S   +++E+ E    K   +PIP         +     A    ++++L  G+
Sbjct: 301 FSVFNLGTSRGYSVREVIEVA-RKTTGHPIPVRECGRREGDPAYLVAASDKAREVL--GW 357

Query: 309 RYNYGIDE 316
           +  Y   E
Sbjct: 358 KPKYDTLE 365

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

 Score = 51.8 bits (122), Expect = 4e-08
 Identities = 47/332 (14%), Positives = 90/332 (27%), Gaps = 26/332 (7%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
           RV VTG TGF   WL + L   G +V                  S  +     ++ ++  
Sbjct: 10  RVFVTGHTGFKGGWLSLWLQTMGATVKGYSL-------TAPTVPSLFETA-RVADGMQSE 61

Query: 67  HADLSHPD---GFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSG 123
             D+   +                  A P+               + GT+ +L++    G
Sbjct: 62  IGDIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVG 121

Query: 124 TVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFA 183
            VK VV  +S+      +      +       D         +    S            
Sbjct: 122 GVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELV-TSSYRNSFFNPANY 180

Query: 184 EEHGLDLVTLIPSMVVGPF------ICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVD 237
            +HG  + T+    V+G        I P    +   S  +I+ N        +       
Sbjct: 181 GQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSG 240

Query: 238 DVARAH------IFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIE 291
            +  A           E  +       ++    I E       +   + +       E  
Sbjct: 241 YLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAH 300

Query: 292 GYRAPGSSSKKLLDAGFRYNYGIDEMFDEAIQ 323
             +   S +K  L  G+   + ++   +  + 
Sbjct: 301 YLKLDCSKAKMQL--GWHPRWNLNTTLEYIVG 330

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Length = 232

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (120), Expect = 5e-08
 Identities = 33/266 (12%), Positives = 67/266 (25%), Gaps = 52/266 (19%)

Query: 7   RVCVTGGTGFIASWLIMRLLDHGY--SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLR 64
            V + G +G     L+  +L+ G    VT   R +L  +    K+++             
Sbjct: 16  SVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVV------DFE 69

Query: 65  IFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGT 124
                 S   G D            A    F   + + V+    +    G     L S  
Sbjct: 70  KLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSK 129

Query: 125 VKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAE 184
                 +S+   +    +    ++E  +      R                         
Sbjct: 130 GAD--KSSNFLYLQVKGEVEAKVEELKFDRYSVFR------------------------- 162

Query: 185 EHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHI 244
                     P +++      +    +       L          +   V V  V RA +
Sbjct: 163 ----------PGVLLCDRQESRPGEWLVRKFFGSLP-----DSWASGHSVPVVTVVRAML 207

Query: 245 FLLEYPDAKGRYICSSHTLTIQEMAE 270
             +  P  K   +  +    I ++ +
Sbjct: 208 NNVVRPRDKQMELLENK--AIHDLGK 231

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Length = 281

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 49.1 bits (115), Expect = 2e-07
 Identities = 10/51 (19%), Positives = 21/51 (41%)

Query: 7  RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLP 57
          ++ +TG  G +   +  +L      V  T   +LD  +  + +  F +  P
Sbjct: 3  KILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEKKP 53

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

 Score = 44.6 bits (103), Expect = 7e-06
 Identities = 16/74 (21%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 7  RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
          RV + G  GFI + L  RLL   +     +          S  +S   N P         
Sbjct: 2  RVLILGVNGFIGNHLTERLLREDHYEVYGLD-------IGSDAISRFLNHP----HFHFV 50

Query: 67 HADLSHPDGFDAAI 80
            D+S    +    
Sbjct: 51 EGDISIHSEWIEYH 64

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} Length = 307

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

 Score = 44.2 bits (102), Expect = 1e-05
 Identities = 38/322 (11%), Positives = 85/322 (26%), Gaps = 25/322 (7%)

Query: 8   VCVTGGTGFIASWLIMRLLDHGYSVTTTV---RSELDPEHRNSKDLSFLKNLPGASERLR 64
           + VTGG GFI S ++  L D G +    V   +      +    +++   +      ++ 
Sbjct: 2   IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQIM 61

Query: 65  IFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGT 124
                      F       T        +D   +  +E++          +  S   +  
Sbjct: 62  AGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYG 121

Query: 125 VKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAE 184
            +   +  S       +                + + +S    +        R   + + 
Sbjct: 122 GRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSM 181

Query: 185 EHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHI 244
                 +    +    P +        R                     V+V DVA  ++
Sbjct: 182 ASVAFHLNTQLNNGESPKLFEGSENFKR-------------------DFVYVGDVADVNL 222

Query: 245 FLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPI---PTVDSLAEIEGYRAPGSSSK 301
           + LE   +    + +    + Q +A+   A + +  I   P  D L            + 
Sbjct: 223 WFLENGVSGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTN 282

Query: 302 KLLDAGFRYNYGIDEMFDEAIQ 323
                  +    + E   E + 
Sbjct: 283 LRAAGYDKPFKTVAEGVTEYMA 304

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.2 bits (100), Expect = 1e-05
 Identities = 8/32 (25%), Positives = 12/32 (37%)

Query: 7  RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRS 38
          RV + G TG     L+ R+L           +
Sbjct: 4  RVLLAGATGLTGEHLLDRILSEPTLAKVIAPA 35

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 8/65 (12%)

Query: 195 PSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDAKG 254
           PS++ GP    + A  + + +A IL  +           +   D+ARA   L        
Sbjct: 146 PSLLFGPREEFRLAEILAAPIARILPGK--------YHGIEACDLARALWRLALEEGKGV 197

Query: 255 RYICS 259
           R++ S
Sbjct: 198 RFVES 202

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} Length = 274

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 42.7 bits (100), Expect = 2e-05
 Identities = 39/264 (14%), Positives = 80/264 (30%), Gaps = 30/264 (11%)

Query: 5   KGRVC-VTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERL 63
            G+   +TG +  I     +     G  VT T R+E   E    +    +      +E++
Sbjct: 3   SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLE----ETKQQILKAGVPAEKI 58

Query: 64  RIFHADLSHPDGFDAAIA------GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILK 117
               AD++   G D  I       G   +L      +  D              T  +  
Sbjct: 59  NAVVADVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKL-- 116

Query: 118 SCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISK----T 173
                   + V+  +            ++++ +         +  S    YA +K     
Sbjct: 117 ------NFQAVIEMTQKTKEHLIKTKGEIVNVSSIV---AGPQAHSGYPYYACAKAALDQ 167

Query: 174 LTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSM 233
            T   A++   +HG+ + ++ P  V   F+         S          +    +    
Sbjct: 168 YTRCTAIDLI-QHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIPVG-HC 225

Query: 234 VHVDDVARAHIFLLEYPDAKGRYI 257
              +++A   +FL +   +   YI
Sbjct: 226 GKPEEIANIIVFLADRNLS--SYI 247

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 42/270 (15%), Positives = 80/270 (29%), Gaps = 58/270 (21%)

Query: 1   MEEGKGRVC-VTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGA 59
           ME  + R+  VTG +G I + +   L+  G  V    R+  + E     +L+      G 
Sbjct: 5   MERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIE-----ELAAECKSAGY 59

Query: 60  SERLRIFHADLSHPDGFDAAIA-------------GCTGVLHVATPVDFEDKEPEEVITQ 106
              L  +  DLS+ +   +  +                G+    T +       +++   
Sbjct: 60  PGTLIPYRCDLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNV 119

Query: 107 R---AINGTLGILKSCLKSGTVK-RVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLD 162
                   T    +S  +       ++  +S +                           
Sbjct: 120 NVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLPL-------------------- 159

Query: 163 SWGKSYAISK----TLTERAALEFAE-EHGLDLVTLIPSMVVGPFICPKFAGSVRSSLAL 217
           S    Y+ +K     LTE    E  E +  +    + P +V   F           + A 
Sbjct: 160 SVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAAT 219

Query: 218 ILGNREEYGFLLNTSMVHVDDVARAHIFLL 247
               +           +  +DVA A I++L
Sbjct: 220 YEQMK----------CLKPEDVAEAVIYVL 239

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 264

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.2 bits (99), Expect = 4e-05
 Identities = 39/280 (13%), Positives = 78/280 (27%), Gaps = 60/280 (21%)

Query: 5   KGRVC-VTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERL 63
             +V  +TG +  I     +     G  VT T R     E    +    +     + + +
Sbjct: 4   AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLE----ETRQQILAAGVSEQNV 59

Query: 64  RIFHADLSHPDGFDAAIAG-------------CTGVLHVATPVDFEDKEPEEVITQRAIN 110
               AD++   G D  ++                G     +       +  E      +N
Sbjct: 60  NSVVADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESY-DATLN 118

Query: 111 GTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAI 170
             L            + V+  +       +            S    +     +   Y+I
Sbjct: 119 LNL------------RSVIALT--KKAVPHLSSTKGEIVNISSIASGLHATPDFP-YYSI 163

Query: 171 SK----TLTERAALEFAEEHGLDLVTLIPSMVVGPFIC---------PKFAGSVRSSLAL 217
           +K      T   A++   +HG+ + ++ P +V   F            KF  ++ +    
Sbjct: 164 AKAAIDQYTRNTAIDLI-QHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKEC 222

Query: 218 ILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDAKGRYI 257
           +              M    D+A    FL +   +   YI
Sbjct: 223 VPAGV----------MGQPQDIAEVIAFLADRKTS--SYI 250

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} Length = 298

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

 Score = 41.5 bits (95), Expect = 7e-05
 Identities = 8/32 (25%), Positives = 12/32 (37%)

Query: 7  RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRS 38
           + + G TG +   L   L   G  +   V S
Sbjct: 2  NILLFGKTGQVGWELQRSLAPVGNLIALDVHS 33

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

 Score = 41.1 bits (96), Expect = 8e-05
 Identities = 36/266 (13%), Positives = 77/266 (28%), Gaps = 60/266 (22%)

Query: 5   KGRVC-VTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERL 63
           +G    VTGG+  I   ++  L   G SV T  R++ +           L        ++
Sbjct: 7   EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELN-------DCLTQWRSKGFKV 59

Query: 64  RIFHADLSHPDGFDAAIAG--------------CTGVLHVATPVDFEDKEPEEVIT---Q 106
                DLS        +                  G++      D+  ++   +++   +
Sbjct: 60  EASVCDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFE 119

Query: 107 RAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGK 166
            A + ++        S     V  +S + A+    + V                      
Sbjct: 120 AAYHLSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGA------------------- 160

Query: 167 SYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFI-----CPKFAGSVRSSLALILGN 221
           +      LT   A E+A +  + +  + P ++    +      P+   ++   +      
Sbjct: 161 TKGAMDQLTRCLAFEWA-KDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCALR 219

Query: 222 REEYGFLLNTSMVHVDDVARAHIFLL 247
           R          M    ++A    FL 
Sbjct: 220 R----------MGEPKELAAMVAFLC 235

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 297

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (96), Expect = 8e-05
 Identities = 40/254 (15%), Positives = 76/254 (29%), Gaps = 34/254 (13%)

Query: 5   KGRVC-VTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERL 63
           +G+V  VTGG   I   ++  LL+ G +V    R     +    +  + L     A  R+
Sbjct: 11  QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQA--RV 68

Query: 64  RIFHADLSHPDGFDAAIA------GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILK 117
                ++ + +  +  +       G    L       F    P E I+ +  +  L    
Sbjct: 69  IPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLS--PAEHISSKGWHAVLET-- 124

Query: 118 SCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTER 177
                  +    Y        +  +    +                 G + A    LT+ 
Sbjct: 125 ------NLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKAGFPLAVHSGAARAGVYNLTKS 178

Query: 178 AALEFAEEHGLDLVTLIPSMVVGPFICPKFAGS----VRSSLALILGNREEYGFLLNTSM 233
            ALE+A   G+ +  + P ++        +          S   I   R          +
Sbjct: 179 LALEWA-CSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIPAKR----------I 227

Query: 234 VHVDDVARAHIFLL 247
              ++V+    FLL
Sbjct: 228 GVPEEVSSVVCFLL 241

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} Length = 247

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 34/255 (13%), Positives = 67/255 (26%), Gaps = 44/255 (17%)

Query: 5   KGRVC-VTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERL 63
           K ++  +TGG   I   +  R    G  +               ++L           R+
Sbjct: 4   KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNL---------GRRV 54

Query: 64  RIFHADLSHPDGFDAAIAGCT---GVLHV-------ATPVDFEDKEPEEVITQRAINGTL 113
                D+S P   +A         G   +          + F++   E+      IN   
Sbjct: 55  LTVKCDVSQPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEIN--- 111

Query: 114 GILKSCLKSGTVKRVVYTSSNAAVFYNDKDV-DMMDETFWSDVDYIRKLDSWGKSYAISK 172
                      V      +              +++ T  +    I     +  + A + 
Sbjct: 112 -----------VDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKIEAYTHYISTKAANI 160

Query: 173 TLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTS 232
             T   A +   + G+ +  + PS+V           ++   L  +L             
Sbjct: 161 GFTRALASDLG-KDGITVNAIAPSLVRTATTEASALSAMFDVLPNMLQAIPRLQ------ 213

Query: 233 MVHVDDVARAHIFLL 247
                D+  A  FL 
Sbjct: 214 --VPLDLTGAAAFLA 226

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 45/256 (17%), Positives = 72/256 (28%), Gaps = 51/256 (19%)

Query: 5   KGRVC-VTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERL 63
            GR   VTG    I    +  L   G  V    R++ D           L +L      +
Sbjct: 6   AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQAD-----------LDSLVRECPGI 54

Query: 64  RIFHADLSHPDGFDAAIAGCTGV------LHVATPVDFEDKEPEEVITQRAINGTLGILK 117
                DL   +  + A+     V        VA    F +   E       +N       
Sbjct: 55  EPVCVDLGDWEATERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVN------- 107

Query: 118 SCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISK----T 173
                    R V   S                   S     R + +    Y  +K     
Sbjct: 108 --------LRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNH-SVYCSTKGALDM 158

Query: 174 LTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAG--SVRSSLALILGNREEYGFLLNT 231
           LT+  ALE    H + +  + P++V+       ++     ++ L  I   +         
Sbjct: 159 LTKVMALELG-PHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIPLGK--------- 208

Query: 232 SMVHVDDVARAHIFLL 247
               V+ V  A +FLL
Sbjct: 209 -FAEVEHVVNAILFLL 223

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} Length = 255

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 39.6 bits (92), Expect = 3e-04
 Identities = 29/257 (11%), Positives = 64/257 (24%), Gaps = 48/257 (18%)

Query: 5   KGRVC-VTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERL 63
            G+   +TG    I   + +     G SV  +  +     H        +  +     + 
Sbjct: 10  DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANH-------VVDEIQQLGGQA 62

Query: 64  RIFHADLSHPDGFDAAIAGCT---GVLHV---------ATPVDFEDKEPEEVITQRAING 111
                D++      A         G + +           P D    +          + 
Sbjct: 63  FACRCDITSEQELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSF 122

Query: 112 TLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAIS 171
                              +   A     +    ++  T  +  +    + S+  S A +
Sbjct: 123 FH----------------LSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAA 166

Query: 172 KTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSS-LALILGNREEYGFLLN 230
             L    A +   E  + +  + P  ++   +       +    L      R        
Sbjct: 167 SHLVRNMAFDLG-EKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIRR-------- 217

Query: 231 TSMVHVDDVARAHIFLL 247
             +    D+A A +FL 
Sbjct: 218 --LGQPQDIANAALFLC 232

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 38.8 bits (90), Expect = 4e-04
 Identities = 33/257 (12%), Positives = 70/257 (27%), Gaps = 46/257 (17%)

Query: 5   KGRVC-VTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERL 63
           K +   VTGGT  I   ++      G  + T  R+E +           L        ++
Sbjct: 7   KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELN-------ECLSKWQKKGFQV 59

Query: 64  RIFHADLSHPDGFDAAIAGCT----GVLHV-------ATPVDFEDKEPEEVITQRAINGT 112
                D S     +  +   +    G L +              D   E+     + N  
Sbjct: 60  TGSVCDASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTN-- 117

Query: 113 LGILKSCLKSGTVKRVVYTSSNAAVFY-NDKDVDMMDETFWSDVDYIRKLDSWGKSYAIS 171
                       ++   + S  A          +++  +  + V        +  +    
Sbjct: 118 ------------LESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASVGSIYSATKGAL 165

Query: 172 KTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSL-ALILGNREEYGFLLN 230
             L    A E+A   G+    + P+++  P     +    +  + +     R        
Sbjct: 166 NQLARNLACEWA-SDGIRANAVAPAVIATPLAEAVYDDEFKKVVISRKPLGR-------- 216

Query: 231 TSMVHVDDVARAHIFLL 247
                 ++V+    FL 
Sbjct: 217 --FGEPEEVSSLVAFLC 231

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 272

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

 Score = 38.9 bits (90), Expect = 5e-04
 Identities = 29/247 (11%), Positives = 67/247 (27%), Gaps = 15/247 (6%)

Query: 5   KGRVC-VTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERL 63
           +G+V  VTG    I   + M L   G  V     +  +           +  +       
Sbjct: 17  EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEE------VVAAIKKNGSDA 70

Query: 64  RIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSG 123
               A++   +            + +   +D        V      + T         + 
Sbjct: 71  ACVKANVGVVEDIVRMFE---EAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVF-TI 126

Query: 124 TVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFA 183
             +   + +  A          ++  +       + K   +  S    +T     A++ A
Sbjct: 127 NTRGQFFVAREAYKHLEIGGRLILMGSITGQAKAVPKHAVYSGSKGAIETFARCMAIDMA 186

Query: 184 EEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSM---VHVDDVA 240
            +  + +  + P  +            + +   L     +EY  +  + +       D+A
Sbjct: 187 -DKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSPLRRVGLPIDIA 245

Query: 241 RAHIFLL 247
           R   FL 
Sbjct: 246 RVVCFLA 252

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} Length = 276

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

 Score = 38.9 bits (90), Expect = 5e-04
 Identities = 41/273 (15%), Positives = 85/273 (31%), Gaps = 52/273 (19%)

Query: 5   KGRVC-VTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERL 63
           KG    +TGG   +   L+ R +  G  V            ++++ L+ L+   G  + +
Sbjct: 4   KGEAVLITGGASGLGRALVDRFVAEGAKVAVL--------DKSAERLAELETDHG--DNV 53

Query: 64  RIFHADLSHPDGFDAAIA-------------GCTGVLHVATPVDFEDKEPEEVITQRAIN 110
                D+   +    A +                G+   +T +    +E  +       +
Sbjct: 54  LGIVGDVRSLEDQKQAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFH 113

Query: 111 ----GTLGILKSCLKSGTVKR--VVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSW 164
               G +  +K+CL +    R  V++T SNA               F+ +        + 
Sbjct: 114 INVKGYIHAVKACLPALVASRGNVIFTISNAG--------------FYPNGGGPLYTAAK 159

Query: 165 GKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREE 224
                + + L    A E A    + +  +    +      P   G    +++ +      
Sbjct: 160 HAIVGLVREL----AFELA--PYVRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADML 213

Query: 225 YGFLLNTSMVHVDDVARAHIFLLEYPDAKGRYI 257
              L    M  V++   A++F     DA     
Sbjct: 214 KSVLPIGRMPEVEEYTGAYVFFATRGDA--APA 244

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.4 bits (89), Expect = 6e-04
 Identities = 45/259 (17%), Positives = 78/259 (30%), Gaps = 57/259 (22%)

Query: 5   KGRVC-VTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERL 63
            G    VTG    I    +  L   G  V    R+  D           L +L      +
Sbjct: 4   SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSD-----------LVSLAKECPGI 52

Query: 64  RIFHADLSHPDGFDAAIAGCTGV------LHVATPVDFEDKEPEEVITQRAINGTLGILK 117
                DL   D  + A+ G   V        +     F +   E      ++N     L+
Sbjct: 53  EPVCVDLGDWDATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVN-----LR 107

Query: 118 SCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISK----T 173
           S          V+  S                   S +       +   +Y+ +K     
Sbjct: 108 S----------VFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLI-TYSSTKGAMTM 156

Query: 174 LTERAALEFAEEHGLDLVTLIPSMVVGPFIC-----PKFAGSVRSSLALILGNREEYGFL 228
           LT+  A+E    H + + ++ P++V+          P+FA  ++    L    +      
Sbjct: 157 LTKAMAMELG-PHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPL---RK------ 206

Query: 229 LNTSMVHVDDVARAHIFLL 247
                  V+DV  + +FLL
Sbjct: 207 ----FAEVEDVVNSILFLL 221

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} Length = 241

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 40/249 (16%), Positives = 71/249 (28%), Gaps = 38/249 (15%)

Query: 5   KGRVC-VTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERL 63
            G+   VTG    I    +      G S+            R  + L+       A    
Sbjct: 4   SGKTILVTGAASGIGRAALDLFAREGASLVAV--------DREERLLAEAVAALEA--EA 53

Query: 64  RIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSG 123
               AD+S P   +A  A              E+      +   A      +  +     
Sbjct: 54  IAVVADVSDPKAVEAVFAEAL-----------EEFGRLHGVAHFAGVAHSALSWNLPLEA 102

Query: 124 TVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWG-KSYAISK----TLTERA 178
             K +    + + +        + +         +  L ++G   YA  K     L    
Sbjct: 103 WEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGAFGLAHYAAGKLGVVGLARTL 162

Query: 179 ALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDD 238
           ALE A   G+ +  L+P ++  P        +    +      R              ++
Sbjct: 163 ALELA-RKGVRVNVLLPGLIQTPMTAGLPPWAWEQEVGASPLGR----------AGRPEE 211

Query: 239 VARAHIFLL 247
           VA+A +FLL
Sbjct: 212 VAQAALFLL 220

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} Length = 272

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 36.9 bits (85), Expect = 0.002
 Identities = 43/278 (15%), Positives = 81/278 (29%), Gaps = 41/278 (14%)

Query: 5   KGRVC-VTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERL 63
             +   +TG +  I     +     G +VT T RS    E    +    +     + +++
Sbjct: 4   SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLE----ETRQIILKSGVSEKQV 59

Query: 64  RIFHADLSHPDGFDAAIAGCT---GVLH--VATPVDFEDKEPEEVITQRAINGTLGILKS 118
               AD++  DG D  I       G +   V               T + I+     LK 
Sbjct: 60  NSVVADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKL 119

Query: 119 CLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAIS--KTLTE 176
            L++      V   +     +       +            + D    + A +     T 
Sbjct: 120 NLQA------VIEMTKKVKPHLVASKGEIVNVSSIVAGPQAQPDFLYYAIAKAALDQYTR 173

Query: 177 RAALEFAEEHGLDLVTLIPSMVVGPFICP---------KFAGSVRSSLALILGNREEYGF 227
             A++ A + G+ + ++ P MV   F            KF   + S    I         
Sbjct: 174 STAIDLA-KFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIPIGA----- 227

Query: 228 LLNTSMVHVDDVARAHIFLLEYPDAKGRYICSSHTLTI 265
                    + +A   +FL +       YI    ++  
Sbjct: 228 -----AGKPEHIANIILFLAD--RNLSFYI-LGQSIVA 257

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 38/256 (14%), Positives = 70/256 (27%), Gaps = 39/256 (15%)

Query: 5   KGRVC-VTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERL 63
           + +V  +TGG G I        + +G  V                    + N  G+ + +
Sbjct: 5   QDKVAIITGGAGGIGETTAKLFVRYGAKVVIA--------DIADDHGQKVCNNIGSPDVI 56

Query: 64  RIFHADLSHPDGFDAAIAGCT---GVLHV---------ATPVDFEDKEPEEVITQRAING 111
              H D++  +     +       G L +          TP    +   E+      IN 
Sbjct: 57  SFVHCDVTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDIN- 115

Query: 112 TLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAIS 171
               +            V   +          +            Y     +  K   + 
Sbjct: 116 ----VYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGEGVSHVY-----TATKHAVLG 166

Query: 172 KTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNT 231
             LT     E   E+G+ +  + P +V  P +   F         L        G     
Sbjct: 167 --LTTSLCTELG-EYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANLKG----- 218

Query: 232 SMVHVDDVARAHIFLL 247
           +++  +DVA A  +L 
Sbjct: 219 TLLRAEDVADAVAYLA 234

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 236

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.7 bits (84), Expect = 0.002
 Identities = 21/136 (15%), Positives = 41/136 (30%), Gaps = 2/136 (1%)

Query: 3   EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASER 62
           E + RV V GG G + S  +       + V +    E + E   S  +    +    +++
Sbjct: 1   EAR-RVLVYGGRGALGSRCVQAFRARNWWVASIDVVE-NEEASASVIVKMTDSFTEQADQ 58

Query: 63  LRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKS 122
           +      L      DA +    G            K  + +  Q     T+    +    
Sbjct: 59  VTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHL 118

Query: 123 GTVKRVVYTSSNAAVF 138
                +    + AA+ 
Sbjct: 119 KEGGLLTLAGAKAALD 134

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 235

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.0 bits (82), Expect = 0.003
 Identities = 32/253 (12%), Positives = 69/253 (27%), Gaps = 40/253 (15%)

Query: 6   GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRI 65
           G+V V GG G + S ++     +GY+V     S  + +  ++  +   KN     + +  
Sbjct: 3   GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSA-NDQADSNILVDGNKNWTEQEQSILE 61

Query: 66  FHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTV 125
             A        D       G    +       K  + +I Q   +  +    +       
Sbjct: 62  QTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPG 121

Query: 126 KRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFA-E 184
             +  T + AA+      +                     K+      LT   A + +  
Sbjct: 122 GLLQLTGAAAAMGPTPSMIGY----------------GMAKAAVHH--LTSSLAAKDSGL 163

Query: 185 EHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHI 244
                ++T++P  +  P        +  S                  S   +  ++   +
Sbjct: 164 PDNSAVLTIMPVTLDTPMNRKWMPNADHS------------------SWTPLSFISEHLL 205

Query: 245 FLLEYPDAKGRYI 257
                  +  R  
Sbjct: 206 KWTTETSS--RPS 216

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

 Score = 36.3 bits (83), Expect = 0.004
 Identities = 34/263 (12%), Positives = 64/263 (24%), Gaps = 47/263 (17%)

Query: 5   KGRVC-VTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERL 63
            G+V   TG    I   + + L   G SV     S              +  L     + 
Sbjct: 5   AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEE------VVAELKKLGAQG 58

Query: 64  RIFHADLSHPDGFDAAIA-------------GCTGVLHVATPVDFEDKEPEEVITQR--- 107
               AD+S P    A                  +G+      ++   +  ++V       
Sbjct: 59  VAIQADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRG 118

Query: 108 AINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKS 167
                   LK C + G +      ++      N                    L +  K+
Sbjct: 119 QFFVAQQGLKHCRRGGRIILTSSIAAVMTGIPN------------------HALYAGSKA 160

Query: 168 YAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGF 227
                      A++     G+ +  + P  V                   +   + + G 
Sbjct: 161 AVEG--FCRAFAVDCG-AKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGL 217

Query: 228 LLNTSM---VHVDDVARAHIFLL 247
                +    +  D+ RA   L 
Sbjct: 218 ANMNPLKRIGYPADIGRAVSALC 240

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 36.1 bits (83), Expect = 0.004
 Identities = 37/264 (14%), Positives = 69/264 (26%), Gaps = 62/264 (23%)

Query: 5   KGRVC-VTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERL 63
           + +V  VTG    I   +   L      V    R++   +       S +  +       
Sbjct: 9   ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCD-------SVVDEIKSFGYES 61

Query: 64  RIFHADLSHPDGFDAAIA----------------GCTGVLHVATPVDFEDKEPEEVITQR 107
             +  D+S  +     I                 G T         + E ++        
Sbjct: 62  SGYAGDVSKKEEISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNS 121

Query: 108 AINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKS 167
               T  I K  + +    R++  SS   +  N                          +
Sbjct: 122 LFYITQPISKRMINNRY-GRIINISSIVGLTGNVGQA----------------------N 158

Query: 168 YAISK----TLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE 223
           Y+ SK      T+  A E A    + +  + P  +             ++ ++ I   R 
Sbjct: 159 YSSSKAGVIGFTKSLAKELA-SRNITVNAIAPGFISSDMTDKISEQIKKNIISNIPAGR- 216

Query: 224 EYGFLLNTSMVHVDDVARAHIFLL 247
                    M   ++VA    FL 
Sbjct: 217 ---------MGTPEEVANLACFLS 231

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 250

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (83), Expect = 0.004
 Identities = 36/258 (13%), Positives = 82/258 (31%), Gaps = 48/258 (18%)

Query: 5   KGRVC-VTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERL 63
            G+V  VTGG   I + ++   ++ G  V    + E       S   +  + LPGA    
Sbjct: 5   AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDE-------SGGRALEQELPGA---- 53

Query: 64  RIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSG 123
                D++  D     ++                    + +   A +           + 
Sbjct: 54  VFILCDVTQEDDVKTLVSETI-----------RRFGRLDCVVNNAGHHPPPQRPEETSAQ 102

Query: 124 TVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGK----SYAISKT----LT 175
             ++++  +           +  + ++  + ++    + + G+     Y  +K     +T
Sbjct: 103 GFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAIGQAQAVPYVATKGAVTAMT 162

Query: 176 ERAALEFAEEHGLDLVTLIPSMVVGPFIC------PKFAGSVRSSLALILGNREEYGFLL 229
           +  AL+ +  +G+ +  + P  +  P         P    S+R  +      R       
Sbjct: 163 KALALDES-PYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQPLGR------- 214

Query: 230 NTSMVHVDDVARAHIFLL 247
              M    +V  A +FL 
Sbjct: 215 ---MGQPAEVGAAAVFLA 229

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	331
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	100.0
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	100.0
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	100.0
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	100.0
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	100.0
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	100.0
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	100.0
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	100.0
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	100.0
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	100.0
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	100.0
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	100.0
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	100.0
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	100.0
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	100.0
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	100.0
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	100.0
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	100.0
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	100.0
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	100.0
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	100.0
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	100.0
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	100.0
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	99.97
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	99.97
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	99.96
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	99.95
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	99.94
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	99.93
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	99.91
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	99.88
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	99.87
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	99.87
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	99.86
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	99.86
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	99.86
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	99.86
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	99.86
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	99.86
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	99.85
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	99.85
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	99.85
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	99.85
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	99.85
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	99.85
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	99.85
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	99.84
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	99.84
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	99.84
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	99.84
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	99.84
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	99.83
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	99.83
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	99.83
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	99.83
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	99.83
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	99.83
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	99.82
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	99.82
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	99.82
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	99.82
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	99.82
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	99.82
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	99.82
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	99.81
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	99.81
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	99.81
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	99.81
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	99.81
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	99.81
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	99.8
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	99.8
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	99.8
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	99.8
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	99.78
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	99.78
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	99.77
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	99.76
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	99.76
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	99.75
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	99.75
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	99.74
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	99.72
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	99.72
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	99.69
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	99.68
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	99.68
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	99.66
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	99.65
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	99.63
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	99.62
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	99.59
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	99.55
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	99.55
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	99.5
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	99.48
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	99.19
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	98.63
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	98.47
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	98.45
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	98.42
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	98.42
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	98.4
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	98.33
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	98.28
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	98.26
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	98.24
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.24
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	98.22
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	98.17
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	98.1
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	98.07
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	98.05
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	98.03
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	98.03
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	97.97
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	97.9
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	97.89
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.88
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	97.86
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.83
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.81
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.75
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	97.74
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.68
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.67
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	97.61
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	97.51
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.49
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	97.49
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	97.49
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	97.47
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	97.46
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.45
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.45
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	97.43
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.41
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.38
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	97.34
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	97.32
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	97.32
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	97.29
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.29
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	97.26
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	97.23
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	97.18
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	97.08
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	97.08
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	97.04
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	97.03
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	96.99
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.98
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.95
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.94
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.93
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	96.92
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	96.85
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	96.84
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	96.81
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.77
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.74
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	96.68
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	96.64
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	96.62
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.62
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	96.61
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.59
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	96.53
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.52
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.46
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.45
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.45
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.43
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	96.43
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.41
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	96.41
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.41
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.38
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.37
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.37
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	96.32
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.18
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.17
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.16
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	96.15
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.12
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	96.11
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	96.11
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.1
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	96.1
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	96.0
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	95.97
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	95.96
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.91
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	95.85
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	95.79
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	95.73
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	95.7
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	95.58
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	95.58
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.58
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	95.57
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	95.56
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.5
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.48
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.48
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	95.43
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	95.42
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.34
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	95.33
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	95.32
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.31
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.26
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.22
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.14
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	95.11
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.11
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	95.1
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.91
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	94.89
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	94.88
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	94.83
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.8
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	94.77
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	94.74
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	94.71
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.7
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	94.7
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	94.7
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	94.69
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	94.67
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	94.62
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	94.48
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	94.42
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	94.31
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	94.27
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	94.15
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	94.04
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	93.99
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	93.99
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	93.93
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	93.88
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	93.74
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	93.7
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	93.67
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	93.53
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	93.49
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	93.43
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	93.35
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	93.27
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	93.23
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	93.22
d1p9oa_	290	Phosphopantothenoylcysteine synthetase {Human (Hom	93.22
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	93.17
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	93.1
d2bw0a2	203	10-formyltetrahydrofolate dehydrogenase domain 1 {	92.99
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	92.98
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	92.97
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	92.93
d2blna2	203	Polymyxin resistance protein ArnA, N-terminal doma	92.87
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	92.74
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	92.66
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	92.66
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	92.55
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.54
d1fmta2	206	Methionyl-tRNAfmet formyltransferase {Escherichia	92.36
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	92.33
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	92.03
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	91.96
d1gsoa2	105	Glycinamide ribonucleotide synthetase (GAR-syn), N	91.6
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	91.58
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	91.28
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	91.17
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	91.14
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	91.12
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	91.07
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	90.97
d1h9aa1	195	Glucose 6-phosphate dehydrogenase, N-terminal doma	90.84
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	90.25
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	90.18
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	90.14
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	90.11
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	90.08
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	89.82
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	89.66
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	89.6
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	88.76
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	88.25
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	87.79
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	86.96
d1f0ka_	351	Peptidoglycan biosynthesis glycosyltransferase Mur	86.66
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	86.63
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	86.44
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	86.18
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	85.65
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	85.49
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	85.46
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.32
d1qkia1	203	Glucose 6-phosphate dehydrogenase, N-terminal doma	85.19
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	85.09
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	84.71
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	84.64
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	84.35
d2bisa1	437	Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI	84.35
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	84.26
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	84.09
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	83.93
d1q7ea_	417	Hypothetical protein YfdW {Escherichia coli [TaxId	82.94
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	82.15
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	82.13
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	81.87
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	81.58
d2vjma1	427	Formyl-CoA transferase {Oxalobacter formigenes [Ta	80.91
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	80.88
d1x74a1	359	2-methylacyl-CoA racemase Mcr {Mycobacterium tuber	80.62
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	80.55
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	80.49
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	80.1

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.9e-48  Score=343.22  Aligned_cols=304  Identities=16%  Similarity=0.135  Sum_probs=224.3

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCC-CCCCCcEEEEeCCCCCCccHHHHhc--C
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNL-PGASERLRIFHADLSHPDGFDAAIA--G   82 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~--~   82 (331)
                      |++||||||||||++|+++|++.|++|++++|.....   ...+++.+... ....++++++.+|++|.+++.+++.  +
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~   78 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSF---NTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQ   78 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC------------------------CCEEECCCCSSCHHHHHHHHHHHC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCccc---chhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccC
Confidence            6899999999999999999999999999999965211   11222222221 1224689999999999999999997  5


Q ss_pred             ccEEEEecccCC--CCCCChhhHHHHHHHHHHHHHHHHHHhcC--CccEEEEecccceeecCCCCCCcccCCCCCChhhh
Q 020104           83 CTGVLHVATPVD--FEDKEPEEVITQRAINGTLGILKSCLKSG--TVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYI  158 (331)
Q Consensus        83 ~d~Vih~a~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~  158 (331)
                      +|+|||+|+..+  ....++. ..+++|+.+|.+|+++|++.+  .++||||+||..+||  .....+++|+++      
T Consensus        79 ~d~v~h~aa~~~~~~~~~~~~-~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG--~~~~~~~~E~~~------  149 (357)
T d1db3a_          79 PDEVYNLGAMSHVAVSFESPE-YTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYG--LVQEIPQKETTP------  149 (357)
T ss_dssp             CSEEEECCCCCTTTTTTSCHH-HHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGT--TCCSSSBCTTSC------
T ss_pred             CCEEEEeecccccchhhhCHH-HHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhC--CCCCCCcCCCCC------
Confidence            699999998755  3345666 889999999999999999875  234799999999985  455678999985      


Q ss_pred             hhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCC-ccHHH-HHHHHhCCCc--ccccCCC-ccc
Q 020104          159 RKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFA-GSVRS-SLALILGNRE--EYGFLLN-TSM  233 (331)
Q Consensus       159 ~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~-~~~~~-~~~~~~~~~~--~~~~~~~-~~~  233 (331)
                         ..|.++|+.+|+++|.+++.++++++++++++||+++|||+...... ..+.. +.....+...  .++.+.. ++|
T Consensus       150 ---~~P~~~Y~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~r~~  226 (357)
T d1db3a_         150 ---FYPRSPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDW  226 (357)
T ss_dssp             ---CCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECC
T ss_pred             ---CCCCChHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcCCCchHHHHHHHHHHhCCCceEEECCCCeeecc
Confidence               35688999999999999999999999999999999999997654332 12222 2233444442  3344444 799


Q ss_pred             eeHHHHHHHHHHhhcCCCCCceEEE-eccccCHHHHHHHHHhhCCCCC----CCCcc----------CCc----------
Q 020104          234 VHVDDVARAHIFLLEYPDAKGRYIC-SSHTLTIQEMAEFLSAKYPEYP----IPTVD----------SLA----------  288 (331)
Q Consensus       234 i~v~D~a~~~~~~~~~~~~~~~~~~-~~~~~s~~e~~~~i~~~~~~~~----~~~~~----------~~~----------  288 (331)
                      +|++|+|++++.+++++ .++.||+ +++.+|++|+++.+.+.++...    .+...          ..+          
T Consensus       227 ~~v~D~~~a~~~~~~~~-~~~~yni~sg~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (357)
T d1db3a_         227 GHAKDYVKMQWMMLQQE-QPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIA  305 (357)
T ss_dssp             EEHHHHHHHHHHTTSSS-SCCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCEEEE
T ss_pred             eeechHHHHHHHHHhCC-CCCeEEECCCCceehHHHHHHHHHHhCCccccccccccccchhhhhhcccccccccCceeEe
Confidence            99999999999999875 4678886 5788999999999999876110    00000          000          


Q ss_pred             ------cccCCcCcccCcHHH-HHcCCccccChhhhHHHHHHHH
Q 020104          289 ------EIEGYRAPGSSSKKL-LDAGFRYNYGIDEMFDEAIQCC  325 (331)
Q Consensus       289 ------~~~~~~~~~~~~~k~-~~lg~~~~~~~~e~i~~~~~~~  325 (331)
                            +........+|++|+ +.|||+|+++|+|+|+++++++
T Consensus       306 ~~~~~~r~~~~~~~~~d~skakk~LGw~P~~sl~egI~~~I~~~  349 (357)
T d1db3a_         306 VDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVAND  349 (357)
T ss_dssp             ECGGGCCCCC-CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHH
T ss_pred             eccccCCCccccccccCHHHHHHHHCCCcCCCHHHHHHHHHHHH
Confidence                  001123456799999 8899999999999999998754

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=100.00  E-value=1.5e-48  Score=339.47  Aligned_cols=301  Identities=23%  Similarity=0.251  Sum_probs=234.5

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEE------EecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTT------TVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~------~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      |||||||||||||++|+++|+++|++|.+      +++..      .......+... ....+++++.+|+.+.......
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~------~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~   73 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLT------YAGNRANLAPV-DADPRLRFVHGDIRDAGLLARE   73 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCC------TTCCGGGGGGG-TTCTTEEEEECCTTCHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCC------ccccHhHhhhh-hcCCCeEEEEeccccchhhhcc
Confidence            58999999999999999999999986543      33322      11111111111 1236899999999999988888


Q ss_pred             hcCccEEEEecccCC--CCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhh
Q 020104           80 IAGCTGVLHVATPVD--FEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDY  157 (331)
Q Consensus        80 ~~~~d~Vih~a~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~  157 (331)
                      ...+|+|+|+|+...  ....++. +.+++|+.++.+++++|++.+ +++|||+||.++|+  .....+++|+++     
T Consensus        74 ~~~~d~vi~~a~~~~~~~~~~~~~-~~~~~N~~gt~~ll~~~~~~~-~~~~I~~Ss~~~yg--~~~~~~~~E~~~-----  144 (322)
T d1r6da_          74 LRGVDAIVHFAAESHVDRSIAGAS-VFTETNVQGTQTLLQCAVDAG-VGRVVHVSTNQVYG--SIDSGSWTESSP-----  144 (322)
T ss_dssp             TTTCCEEEECCSCCCHHHHHHCCH-HHHHHHTHHHHHHHHHHHHTT-CCEEEEEEEGGGGC--CCSSSCBCTTSC-----
T ss_pred             ccccceEEeecccccccccccchH-HHhhhhHHHHHHHHHHHHHcC-CceEEEeecceeec--CCCCCCCCCCCC-----
Confidence            889999999997654  2223344 788999999999999999998 89999999999995  556678899885     


Q ss_pred             hhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHH-HHHhCCCcc-cccCCC-ccce
Q 020104          158 IRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSL-ALILGNREE-YGFLLN-TSMV  234 (331)
Q Consensus       158 ~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~-~~~i  234 (331)
                          ..|.++||.+|..+|.+++.++++++++++++||+++|||++.+.  ..+..++ ....+++.. ++.+.+ ++|+
T Consensus       145 ----~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~--~~i~~~i~~~~~~~~i~v~~~g~~~r~~i  218 (322)
T d1r6da_         145 ----LEPNSPYAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPE--KLIPLFVTNLLDGGTLPLYGDGANVREWV  218 (322)
T ss_dssp             ----CCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTT--SHHHHHHHHHHTTCCEEEETTSCCEEEEE
T ss_pred             ----CCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCcC--cHHHHHHHHHHcCCCcEEecCCCeEEccE
Confidence                356789999999999999999999999999999999999986543  3444444 344555533 455555 7999


Q ss_pred             eHHHHHHHHHHhhcCCCCCceEEE-eccccCHHHHHHHHHhhCCCCCCCCccCCccccCCcCcccCcHHH-HHcCCcccc
Q 020104          235 HVDDVARAHIFLLEYPDAKGRYIC-SSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSSKKL-LDAGFRYNY  312 (331)
Q Consensus       235 ~v~D~a~~~~~~~~~~~~~~~~~~-~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~lg~~~~~  312 (331)
                      |++|+|+++..+++++..+++||+ +++.+|+.|+++.+.+.++....................+|++|+ +.|||+|++
T Consensus       219 ~v~D~a~ai~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~  298 (322)
T d1r6da_         219 HTDDHCRGIALVLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELGYRPQV  298 (322)
T ss_dssp             EHHHHHHHHHHHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEECCCTTCCCBCCBCCHHHHHHHCCCCCS
T ss_pred             EHHHHHHHHHHHHhCCCCCCeeEEeecccchhHHHHHHHHHHhCCCccceeecCCCCCCCceeeeCHHHHHHHHCCCCCC
Confidence            999999999999999888889997 568899999999999988732111100111113344567899999 889999999


Q ss_pred             ChhhhHHHHHHHHHHc
Q 020104          313 GIDEMFDEAIQCCKEK  328 (331)
Q Consensus       313 ~~~e~i~~~~~~~~~~  328 (331)
                      +++|+|+++++||+++
T Consensus       299 ~~eegI~~~i~w~~~n  314 (322)
T d1r6da_         299 SFADGLARTVRWYREN  314 (322)
T ss_dssp             CHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999999875

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-47  Score=328.91  Aligned_cols=299  Identities=19%  Similarity=0.248  Sum_probs=228.0

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      +|||||||||||||++|+++|+++|++|++++|...    .....+...    ....++++...|+.+.     ++.++|
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~----~~~~~~~~~----~~~~~~d~~~~~~~~~-----~~~~~d   67 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFT----GRKRNVEHW----IGHENFELINHDVVEP-----LYIEVD   67 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS----CCGGGTGGG----TTCTTEEEEECCTTSC-----CCCCCS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCc----CCHHHHHHh----cCCCceEEEehHHHHH-----HHcCCC
Confidence            479999999999999999999999999999987542    122222211    1124566666666543     345899


Q ss_pred             EEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcC
Q 020104           85 GVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLD  162 (331)
Q Consensus        85 ~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~  162 (331)
                      +|||+|+....  ...++. ..+++|+.++.+|+++|++.+ + |+||+||.++|+  .....+++|+.+...+    +.
T Consensus        68 ~VihlAa~~~~~~~~~~~~-~~~~~Nv~g~~~ll~~~~~~~-~-k~I~~SS~~vy~--~~~~~~~~e~~~~~~~----~~  138 (312)
T d2b69a1          68 QIYHLASPASPPNYMYNPI-KTLKTNTIGTLNMLGLAKRVG-A-RLLLASTSEVYG--DPEVHPQSEDYWGHVN----PI  138 (312)
T ss_dssp             EEEECCSCCSHHHHTTCHH-HHHHHHHHHHHHHHHHHHHHT-C-EEEEEEEGGGGB--SCSSSSBCTTCCCBCC----SS
T ss_pred             EEEECcccCCchhHHhCHH-HHHHHHHHHHHHHHHHHHHcC-C-cEEEEEChheec--CCCCCCCCccccCCCC----CC
Confidence            99999997652  234666 889999999999999999998 5 899999999996  4455567776542211    23


Q ss_pred             CCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHH-HHHhCCCcc-cccCCC-ccceeHHHH
Q 020104          163 SWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSL-ALILGNREE-YGFLLN-TSMVHVDDV  239 (331)
Q Consensus       163 ~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~-~~~i~v~D~  239 (331)
                      .|.++|+.+|.++|.+++.++++++++++++||+++|||+........+..++ ....+++.. ++.+.. ++|+|++|+
T Consensus       139 ~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~i~~~i~~~~~g~~i~i~~~g~~~r~~i~v~D~  218 (312)
T d2b69a1         139 GPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDL  218 (312)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHH
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHhCCcEEEEEeeeEECCCCCCCCccHHHHHHHHHHcCCCeEEeCCCCeeEccEEHHHH
Confidence            56789999999999999999999999999999999999987765444555544 445666644 355555 799999999


Q ss_pred             HHHHHHhhcCCCCCceEEE-eccccCHHHHHHHHHhhCCCC-CCCCccCCccccCCcCcccCcHHH-HHcCCccccChhh
Q 020104          240 ARAHIFLLEYPDAKGRYIC-SSHTLTIQEMAEFLSAKYPEY-PIPTVDSLAEIEGYRAPGSSSKKL-LDAGFRYNYGIDE  316 (331)
Q Consensus       240 a~~~~~~~~~~~~~~~~~~-~~~~~s~~e~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~k~-~~lg~~~~~~~~e  316 (331)
                      +++++.+++.. .++.||+ +++.+++.++++.+.+.++.. .+..  ............+|++|+ +.|||+|.+++++
T Consensus       219 ~~~~~~~~~~~-~~~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~d~~k~~~~lgw~p~~~l~~  295 (312)
T d2b69a1         219 VNGLVALMNSN-VSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQF--LSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEE  295 (312)
T ss_dssp             HHHHHHHHTSS-CCSCEEESCCCEEEHHHHHHHHHHHHTCCCCEEE--ECCCTTCCCCCCBCCHHHHHHHCCCCCSCHHH
T ss_pred             HHHHHHHHhhc-cCCceEecCCcccchhhHHHHHHHHhCCCCceEE--CCCCCCCCCeeeECHHHHHHHHCCCCCCCHHH
Confidence            99999988765 5677886 568899999999999988732 1111  111113345677899999 8899999999999


Q ss_pred             hHHHHHHHHHHc
Q 020104          317 MFDEAIQCCKEK  328 (331)
Q Consensus       317 ~i~~~~~~~~~~  328 (331)
                      +|+++++||+++
T Consensus       296 ~I~~~i~w~~~~  307 (312)
T d2b69a1         296 GLNKAIHYFRKE  307 (312)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999764

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=100.00  E-value=7.5e-48  Score=339.65  Aligned_cols=312  Identities=15%  Similarity=0.140  Sum_probs=229.9

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--Cc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--GC   83 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~   83 (331)
                      |||||||||||||++|+++|++.|++|++..++.     ........+..+. ..++++++.+|++|+..+..+++  ++
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~-----~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~l~~~~~~~~~   74 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKL-----TYAGNLESLSDIS-ESNRYNFEHADICDSAEITRIFEQYQP   74 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECC-----CTTCCGGGGTTTT-TCTTEEEEECCTTCHHHHHHHHHHHCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCC-----CccccHHHHHhhh-hcCCcEEEEccCCCHHHHHHHHHhCCC
Confidence            4899999999999999999999999865554433     1222222232222 23689999999999999999886  68


Q ss_pred             cEEEEecccCC--CCCCChhhHHHHHHHHHHHHHHHHHHhcC--------CccEEEEecccceeecCCCCCCcccCCCCC
Q 020104           84 TGVLHVATPVD--FEDKEPEEVITQRAINGTLGILKSCLKSG--------TVKRVVYTSSNAAVFYNDKDVDMMDETFWS  153 (331)
Q Consensus        84 d~Vih~a~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--------~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~  153 (331)
                      |+||||||...  ....++. ..+++|+.++.+++++|++.+        .+++|||+||..+|+..  ...+..|+...
T Consensus        75 d~VihlAa~~~~~~~~~~p~-~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~--~~~~~~~~~~~  151 (361)
T d1kewa_          75 DAVMHLAAESHVDRSITGPA-AFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDL--PHPDEVENSVT  151 (361)
T ss_dssp             SEEEECCSCCCHHHHHHCTH-HHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCC--CCGGGSCTTSC
T ss_pred             CEEEECccccchhhHHhCHH-HHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCC--ccCCccccccC
Confidence            99999999755  2223565 889999999999999998764        14599999999999632  22222222110


Q ss_pred             C-hhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHH-HHHhCCCcc-cccCCC
Q 020104          154 D-VDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSL-ALILGNREE-YGFLLN  230 (331)
Q Consensus       154 ~-~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~  230 (331)
                      . ......+..|.+.||.+|.++|.++..+.++++++++++||+++|||++...  ..+..++ ....+++.. ++.+.+
T Consensus       152 ~~~~~e~~~~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~--~~i~~~i~~~~~g~~~~v~g~g~~  229 (361)
T d1kewa_         152 LPLFTETTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPE--KLIPLVILNALEGKPLPIYGKGDQ  229 (361)
T ss_dssp             CCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTT--SHHHHHHHHHHHTCCEEEETTSCC
T ss_pred             CCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCcC--cHHHHHHHHHHcCCCcEEeCCCCe
Confidence            0 0001122467889999999999999999999999999999999999986542  2334443 445566543 455555


Q ss_pred             -ccceeHHHHHHHHHHhhcCCCCCceEEEe-ccccCHHHHHHHHHhhCC---CCCCCCccCCc----cccCCcCcccCcH
Q 020104          231 -TSMVHVDDVARAHIFLLEYPDAKGRYICS-SHTLTIQEMAEFLSAKYP---EYPIPTVDSLA----EIEGYRAPGSSSK  301 (331)
Q Consensus       231 -~~~i~v~D~a~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~i~~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~  301 (331)
                       ++|+|++|+|+++..+++++..+++||++ ++.+|+.|+++.+.+.++   ...........    .........+|++
T Consensus       230 ~r~~i~v~D~a~ai~~~~~~~~~~~~~Ni~s~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  309 (361)
T d1kewa_         230 IRDWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAG  309 (361)
T ss_dssp             EEEEEEHHHHHHHHHHHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEECCCTTCCCBCCBCCH
T ss_pred             EEeCEEHHHHHHHHHHHHhcCCCCCeEEECCCCCcchHHHHhHhhhhcccccccccCcccceeecCCCCCCCceeeeCHH
Confidence             79999999999999999988888899975 578999999999988554   11111100111    0123345678999


Q ss_pred             HH-HHcCCccccChhhhHHHHHHHHHHc
Q 020104          302 KL-LDAGFRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       302 k~-~~lg~~~~~~~~e~i~~~~~~~~~~  328 (331)
                      |+ +.|||+|+++++|+|+++++||+++
T Consensus       310 k~~~~lgw~P~~~l~e~i~~ti~w~~~n  337 (361)
T d1kewa_         310 KISRELGWKPLETFESGIRKTVEWYLAN  337 (361)
T ss_dssp             HHHHHHCCCCSCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHHHh
Confidence            99 7899999999999999999999775

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=100.00  E-value=5.6e-47  Score=332.70  Aligned_cols=305  Identities=17%  Similarity=0.182  Sum_probs=231.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      +||||||||||||||++|+++|+++|++|.+++++..... .....+..+     ...+++++.+|+.|.+.+..++.+.
T Consensus         1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~-~~~~~~~~~-----~~~~i~~~~~Di~d~~~~~~~~~~~   74 (346)
T d1oc2a_           1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYA-GNKANLEAI-----LGDRVELVVGDIADAELVDKLAAKA   74 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTT-CCGGGTGGG-----CSSSEEEEECCTTCHHHHHHHHTTC
T ss_pred             CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCcc-ccHHHHHHh-----hcCCeEEEEccCCCHHHHHHHHhhh
Confidence            4789999999999999999999999998887777642111 111111111     1268999999999999999999999


Q ss_pred             cEEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCC----------CCcccCCC
Q 020104           84 TGVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKD----------VDMMDETF  151 (331)
Q Consensus        84 d~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~----------~~~~~E~~  151 (331)
                      +.|+|+|+....  ...++. +.+++|+.++.++++++++.+  .++|++||+.+|+.....          ....+|++
T Consensus        75 ~~v~~~a~~~~~~~~~~~~~-~~~~~N~~g~~nll~~~~~~~--~k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~  151 (346)
T d1oc2a_          75 DAIVHYAAESHNDNSLNDPS-PFIHTNFIGTYTLLEAARKYD--IRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAET  151 (346)
T ss_dssp             SEEEECCSCCCHHHHHHCCH-HHHHHHTHHHHHHHHHHHHHT--CEEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTS
T ss_pred             hhhhhhhhcccccchhhCcc-cceeeehHhHHhhhhhhcccc--ccccccccceEecccCccccccccccCcccccccCC
Confidence            999999986552  224555 889999999999999999998  589999999999632111          11222332


Q ss_pred             CCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHH-HHHHhCCC-cccccCC
Q 020104          152 WSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSS-LALILGNR-EEYGFLL  229 (331)
Q Consensus       152 ~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~  229 (331)
                               ...|.+.||.+|+++|.+++.++++++++++++||+++|||+....  ..+... .....+.. ..++.+.
T Consensus       152 ---------~~~p~s~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~~~~--~~~~~~i~~~~~~~~~~i~~~g~  220 (346)
T d1oc2a_         152 ---------NYNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIE--KFIPRQITNILAGIKPKLYGEGK  220 (346)
T ss_dssp             ---------CCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTT--SHHHHHHHHHHHTCCCEEETTSC
T ss_pred             ---------CCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCCCcc--chhHHHHHHHHcCCceeEeCCCC
Confidence                     2456789999999999999999999999999999999999976432  233333 34445555 3445555


Q ss_pred             C-ccceeHHHHHHHHHHhhcCCCCCceEEE-eccccCHHHHHHHHHhhCCCCCCCCccCCccccCCcCcccCcHHH-HHc
Q 020104          230 N-TSMVHVDDVARAHIFLLEYPDAKGRYIC-SSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSSKKL-LDA  306 (331)
Q Consensus       230 ~-~~~i~v~D~a~~~~~~~~~~~~~~~~~~-~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~l  306 (331)
                      . ++|+|++|+|++++.++.++..++.||+ +++..++.|+++.+.+.++...........+........+|++|+ +.|
T Consensus       221 ~~r~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~L  300 (346)
T d1oc2a_         221 NVRDWIHTNDHSTGVWAILTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDEL  300 (346)
T ss_dssp             CEEECEEHHHHHHHHHHHHHHCCTTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEECCCTTCCCBCCBCCHHHHHHH
T ss_pred             ccccccchhhHHHHHHHHHhhcccCccccccccccccchHHHHHHHHHhCCCCcceEECCCCCCCCceeeeCHHHHHHHH
Confidence            5 8999999999999999999888888875 678899999999999988743322200111112334556899999 889


Q ss_pred             CCcccc-ChhhhHHHHHHHHHHc
Q 020104          307 GFRYNY-GIDEMFDEAIQCCKEK  328 (331)
Q Consensus       307 g~~~~~-~~~e~i~~~~~~~~~~  328 (331)
                      ||+|++ +|+|+|+++++||+++
T Consensus       301 Gw~P~~t~l~e~i~~ti~w~~~n  323 (346)
T d1oc2a_         301 GWTPQFTDFSEGLEETIQWYTDN  323 (346)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHT
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHH
Confidence            999987 6999999999999875

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=2.7e-46  Score=327.77  Aligned_cols=307  Identities=18%  Similarity=0.136  Sum_probs=237.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCC--CCCCcEEEEeCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLP--GASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      ++|+|||||||||||++|+++|++.||+|++++|...    .....+..+....  ...++++++.+|+.|...+.....
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~   90 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFAT----GHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACA   90 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS----CCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHT
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCCC----cchhhHHHHHHhhhhcccCCeeEEeeccccccccccccc
Confidence            4579999999999999999999999999999997541    1222221111111  112578999999999998888888


Q ss_pred             CccEEEEecccCC--CCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhh
Q 020104           82 GCTGVLHVATPVD--FEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIR  159 (331)
Q Consensus        82 ~~d~Vih~a~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~  159 (331)
                      +++.|+|+++...  ....++. ..+++|+.++.+|+++|++.+ +++|||+||.++|+  .....+++|+++       
T Consensus        91 ~~~~v~~~~a~~~~~~~~~~~~-~~~~~Nv~gt~~ll~~~~~~~-~~~~i~~SS~~vyg--~~~~~~~~E~~~-------  159 (341)
T d1sb8a_          91 GVDYVLHQAALGSVPRSINDPI-TSNATNIDGFLNMLIAARDAK-VQSFTYAASSSTYG--DHPGLPKVEDTI-------  159 (341)
T ss_dssp             TCSEEEECCSCCCHHHHHHCHH-HHHHHHTHHHHHHHHHHHHTT-CSEEEEEEEGGGGT--TCCCSSBCTTCC-------
T ss_pred             cccccccccccccccccccCcc-chhheeehhHHHHHHHHHhcC-CceEEEcccceeeC--CCCCCCccCCCC-------
Confidence            9999999998654  2234555 789999999999999999999 89999999999995  455678899886       


Q ss_pred             hcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCC--ccHHHHH-HHHhCCCc-ccccCCC-ccce
Q 020104          160 KLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFA--GSVRSSL-ALILGNRE-EYGFLLN-TSMV  234 (331)
Q Consensus       160 ~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~--~~~~~~~-~~~~~~~~-~~~~~~~-~~~i  234 (331)
                        ..|.+.|+.+|.++|++++.+++.++++++++||+++||++..+...  ..+..+. ..+.|++. .++++.. ++|+
T Consensus       160 --~~p~~~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~~~~~~~~~i~~~~~~~~~g~~i~~~g~g~~~r~~i  237 (341)
T d1sb8a_         160 --GKPLSPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFC  237 (341)
T ss_dssp             --CCCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCE
T ss_pred             --CCCCCcchHHHHHHHHHHHHHHHHhCCCeEEEEeceeeccCcCCCCchhhhHHHHHHHHHcCCceEEcCCCCEEEEEE
Confidence              36788999999999999999999999999999999999998765432  3343333 44566664 3445555 8999


Q ss_pred             eHHHHHHHHHHhhcCCC--CCceEEEe-ccccCHHHHHHHHHhhCCCCCCCCc--cCCcc--ccCCcCcccCcHHH-HHc
Q 020104          235 HVDDVARAHIFLLEYPD--AKGRYICS-SHTLTIQEMAEFLSAKYPEYPIPTV--DSLAE--IEGYRAPGSSSKKL-LDA  306 (331)
Q Consensus       235 ~v~D~a~~~~~~~~~~~--~~~~~~~~-~~~~s~~e~~~~i~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~k~-~~l  306 (331)
                      |++|+|+++..++..+.  .+++||++ ++.+|+.|+++.+.+.++...+...  ..+..  .........|++|+ +.|
T Consensus       238 ~v~D~~~a~~~~~~~~~~~~~~~~~~~~~~~~si~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~L  317 (341)
T d1sb8a_         238 YIENTVQANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAKLL  317 (341)
T ss_dssp             EHHHHHHHHHHHHTCCGGGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCEEECCCTTCCSBCCBCCHHHHHHT
T ss_pred             EEeccchhhhhhhhccccccceeeeecccccchHHHHHHHHHHHhccccccccccccccCCCCCCcCeeeeCHHHHHHHH
Confidence            99999999999887653  35688875 5789999999999987762222210  01111  12334567899999 789


Q ss_pred             CCccccChhhhHHHHHHHHHH
Q 020104          307 GFRYNYGIDEMFDEAIQCCKE  327 (331)
Q Consensus       307 g~~~~~~~~e~i~~~~~~~~~  327 (331)
                      ||+|+++++++|+++++||++
T Consensus       318 Gw~p~~sl~~gi~~ti~wy~~  338 (341)
T d1sb8a_         318 GYAPKYDVSAGVALAMPWYIM  338 (341)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHH
T ss_pred             CCCcCCCHHHHHHHHHHHHHH
Confidence            999999999999999999986

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=6.5e-46  Score=328.09  Aligned_cols=305  Identities=18%  Similarity=0.157  Sum_probs=229.1

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |+ ++|||||||||||||++|+++|+++||+|++++|...     . .....       ....++..+|+.+.+.+.+++
T Consensus        12 ~~-~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~-----~-~~~~~-------~~~~~~~~~D~~~~~~~~~~~   77 (363)
T d2c5aa1          12 PS-ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKN-----E-HMTED-------MFCDEFHLVDLRVMENCLKVT   77 (363)
T ss_dssp             TT-SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC-----S-SSCGG-------GTCSEEEECCTTSHHHHHHHH
T ss_pred             CC-CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCc-----c-chhhh-------cccCcEEEeechhHHHHHHHh
Confidence            44 4678999999999999999999999999999987652     1 11111       135678889999999999999


Q ss_pred             cCccEEEEecccCCCC---CCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhh
Q 020104           81 AGCTGVLHVATPVDFE---DKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDY  157 (331)
Q Consensus        81 ~~~d~Vih~a~~~~~~---~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~  157 (331)
                      +++|+|||+|+.....   ...+. .....|+.++.+++++|++.+ +++||++||..+|+..  ...+.+|......+ 
T Consensus        78 ~~~d~Vih~a~~~~~~~~~~~~~~-~~~~~n~~gt~~ll~~~~~~~-vk~~i~~SS~~~~~~~--~~~~~~~~~~~~~e-  152 (363)
T d2c5aa1          78 EGVDHVFNLAADMGGMGFIQSNHS-VIMYNNTMISFNMIEAARING-IKRFFYASSACIYPEF--KQLETTNVSLKESD-  152 (363)
T ss_dssp             TTCSEEEECCCCCCCHHHHTTCHH-HHHHHHHHHHHHHHHHHHHTT-CSEEEEEEEGGGSCGG--GSSSSSSCEECGGG-
T ss_pred             hcCCeEeecccccccccccccccc-cccccccchhhHHHHhHHhhC-cccccccccccccccc--cccccccccccccc-
Confidence            9999999999765521   23444 889999999999999999999 9999999999998633  22333333221111 


Q ss_pred             hhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccH--HHH-HHHH-hCCC-cccccCCC-c
Q 020104          158 IRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSV--RSS-LALI-LGNR-EEYGFLLN-T  231 (331)
Q Consensus       158 ~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~--~~~-~~~~-~~~~-~~~~~~~~-~  231 (331)
                       ..+..|.++|+.+|+++|++++.+.++++++++++||+++||++.........  ... .... .... ..++++.+ +
T Consensus       153 -~~~~~p~~~Yg~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~r  231 (363)
T d2c5aa1         153 -AWPAEPQDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTR  231 (363)
T ss_dssp             -GSSBCCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEE
T ss_pred             -CCcCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEeccCCcccccccccccccccccccccccccccCCCCeEE
Confidence             11235678999999999999999999999999999999999997654332221  111 1222 2222 44455555 7


Q ss_pred             cceeHHHHHHHHHHhhcCCCCCceEEE-eccccCHHHHHHHHHhhCCCCCCCCccCCccccCCcCcccCcHHH-HHcCCc
Q 020104          232 SMVHVDDVARAHIFLLEYPDAKGRYIC-SSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSSKKL-LDAGFR  309 (331)
Q Consensus       232 ~~i~v~D~a~~~~~~~~~~~~~~~~~~-~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~lg~~  309 (331)
                      +|+|++|+++++..+++.+ .++.||+ +++.+|+.|+++.+.+..+.. .+. ...+.........+|++|+ +.|||+
T Consensus       232 d~i~v~D~~~~~~~~~~~~-~~~~~ni~~~~~~s~~~l~~~i~~~~g~~-~~i-~~~~~~~~~~~~~~d~ska~~~LGw~  308 (363)
T d2c5aa1         232 SFTFIDECVEGVLRLTKSD-FREPVNIGSDEMVSMNEMAEMVLSFEEKK-LPI-HHIPGPEGVRGRNSDNNLIKEKLGWA  308 (363)
T ss_dssp             CCEEHHHHHHHHHHHHHSS-CCSCEEECCCCCEEHHHHHHHHHHTTTCC-CCE-EEECCCCCCSBCEECCHHHHHHHSCC
T ss_pred             EEeehhHHHHHHHHHHhCC-CCCeEEEecCCcccHHHHHHHHHHHhCCC-Cce-EeCCCCCCccccccCHHHHHHHhCCC
Confidence            9999999999999998765 5678886 578999999999999988732 121 0112223345566899999 889999


Q ss_pred             cccChhhhHHHHHHHHHHc
Q 020104          310 YNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       310 ~~~~~~e~i~~~~~~~~~~  328 (331)
                      |+++|+|+|+++++||+++
T Consensus       309 p~~sleegi~~ti~w~~~~  327 (363)
T d2c5aa1         309 PNMRLKEGLRITYFWIKEQ  327 (363)
T ss_dssp             CCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999764

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7e-46  Score=324.61  Aligned_cols=304  Identities=18%  Similarity=0.193  Sum_probs=225.1

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--Cc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--GC   83 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~   83 (331)
                      |||||||||||||++|++.|+++|++|++++|-..    ............  ...+++++++|+.|.+.+.++++  ++
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~----~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~l~~~~~~~~~   74 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERL--GGKHPTFVEGDIRNEALMTEILHDHAI   74 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS----CCTTHHHHHHHH--HTSCCEEEECCTTCHHHHHHHHHHTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC----cchhhHHHHHhh--cCCCCEEEEeecCCHHHHHHHHhccCC
Confidence            57999999999999999999999999999987541    111111111111  11578999999999999999987  79


Q ss_pred             cEEEEecccCC--CCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhc
Q 020104           84 TGVLHVATPVD--FEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKL  161 (331)
Q Consensus        84 d~Vih~a~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~  161 (331)
                      |+|||+||...  ....++. ..+++|+.++++++++|++.+ +++||++||..+|+  .....+..|+++        .
T Consensus        75 d~ViHlAa~~~~~~~~~~~~-~~~~~Nv~gt~nlL~~~~~~~-v~~~i~~Ss~~vy~--~~~~~~~~e~~~--------~  142 (338)
T d1udca_          75 DTVIHFAGLKAVGESVQKPL-EYYDNNVNGTLRLISAMRAAN-VKNFIFSSSATVYG--DQPKIPYVESFP--------T  142 (338)
T ss_dssp             SEEEECCSCCCHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHT-CCEEEEEEEGGGGC--SCCSSSBCTTSC--------C
T ss_pred             CEEEECCCccchhhHHhCHH-HHHHhHHHHHHHHHHHHHHhC-CCEEEecCcceEEc--cccccccccccc--------c
Confidence            99999999654  2233565 899999999999999999999 99999999999985  333444455542        2


Q ss_pred             CCCCchhHhhHHHHHHHHHHHHHHc-CCcEEEeccCceeCCCCCCCC--------CccHHHHHHHHhCCCcc--------
Q 020104          162 DSWGKSYAISKTLTERAALEFAEEH-GLDLVTLIPSMVVGPFICPKF--------AGSVRSSLALILGNREE--------  224 (331)
Q Consensus       162 ~~~~~~Y~~~K~~~e~~~~~~~~~~-~~~~~ilRp~~v~G~~~~~~~--------~~~~~~~~~~~~~~~~~--------  224 (331)
                      ..|.++|+.+|..+|.++..+..+. +++++++||+++||++.....        ...+..+.....+....        
T Consensus       143 ~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~g~~~  222 (338)
T d1udca_         143 GTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDY  222 (338)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCS
T ss_pred             CCCcchHHHHHhhhhHHHHHHHhhccCCeEEEEeeccEEeccCCCCCCCCccccHHHHHHHHHHHHhcCCCCEEEeCCCc
Confidence            3568899999999999999776654 799999999999998754321        12333344444333211        


Q ss_pred             -cccCCC-ccceeHHHHHHHHHHhhcC---CCCCceEEEe-ccccCHHHHHHHHHhhCCCCCCCCccCCccccCCcCccc
Q 020104          225 -YGFLLN-TSMVHVDDVARAHIFLLEY---PDAKGRYICS-SHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGS  298 (331)
Q Consensus       225 -~~~~~~-~~~i~v~D~a~~~~~~~~~---~~~~~~~~~~-~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (331)
                       ..++.. ++|+|++|++++...+...   ...+++||++ ++++|+.|+++.+.+.++. .++...............+
T Consensus       223 ~~~~g~~~rd~i~v~D~~~~~~~~~~~~~~~~~~~i~Ni~~~~~~si~e~~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~  301 (338)
T d1udca_         223 PTEDGTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGK-PVNYHFAPRREGDLPAYWA  301 (338)
T ss_dssp             SSTTSSCEECEEEHHHHHHHHHHHHHHHTTCCEEEEEEESCSSCEEHHHHHHHHHHHHTS-CCCEEEECCCTTCCSBCCB
T ss_pred             ccCCCCceeeEEEEeehhhhccccccccccccCcceeeecCCCCCcHHHHHHHHHHHHCC-CCceEECCCCCCCCCEeeE
Confidence             122333 7899999999888876653   3334579975 5779999999999998872 1221001111133455678


Q ss_pred             CcHHH-HHcCCccccChhhhHHHHHHHHHHc
Q 020104          299 SSKKL-LDAGFRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       299 ~~~k~-~~lg~~~~~~~~e~i~~~~~~~~~~  328 (331)
                      |++|+ +.|||+|+++++|+|+++++|++++
T Consensus       302 d~~k~~~~lgwkp~~~l~egi~~ti~w~~~~  332 (338)
T d1udca_         302 DASKADRELNWRVTRTLDEMAQDTWHWQSRH  332 (338)
T ss_dssp             CCHHHHHHHCCCCCCCHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHCCCcCCCHHHHHHHHHHHHHhc
Confidence            99999 7899999999999999999999988

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=2.2e-45  Score=319.31  Aligned_cols=302  Identities=16%  Similarity=0.117  Sum_probs=229.5

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--Cc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--GC   83 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~   83 (331)
                      |+|||||||||||++|+++|+++||+|++++|....   .....++.+.    ..++++++.+|+.|.+.+...+.  .+
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~---~~~~~l~~~~----~~~~~~~~~~Dl~d~~~~~~~~~~~~~   73 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSS---DTRWRLRELG----IEGDIQYEDGDMADACSVQRAVIKAQP   73 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSS---CCCHHHHHTT----CGGGEEEEECCTTCHHHHHHHHHHHCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCc---ccHHHHHHhc----ccCCcEEEEccccChHHhhhhhccccc
Confidence            689999999999999999999999999999997621   1112222221    12679999999999999988875  57


Q ss_pred             cEEEEecccCC--CCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhc
Q 020104           84 TGVLHVATPVD--FEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKL  161 (331)
Q Consensus        84 d~Vih~a~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~  161 (331)
                      ++++|+|+...  ....++. ..++.|+.++.+++++|++.+..++|++.||..+|+  .....+.+|+++         
T Consensus        74 ~~~~~~a~~~~~~~~~~~~~-~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~--~~~~~~~~E~~~---------  141 (321)
T d1rpna_          74 QEVYNLAAQSFVGASWNQPV-TTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFG--LIQAERQDENTP---------  141 (321)
T ss_dssp             SEEEECCSCCCHHHHTTSHH-HHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGC--SCSSSSBCTTSC---------
T ss_pred             cccccccccccccccccchH-HHHhhhhhchHHHHHHHHHhCCCcccccccchhhcC--cccCCCCCCCCC---------
Confidence            89999987655  2233454 889999999999999999998555888888877764  455567788875         


Q ss_pred             CCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCc-c-HHHHHHHHhCCCc--ccccCCC-ccceeH
Q 020104          162 DSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAG-S-VRSSLALILGNRE--EYGFLLN-TSMVHV  236 (331)
Q Consensus       162 ~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~-~-~~~~~~~~~~~~~--~~~~~~~-~~~i~v  236 (331)
                      ..|.++|+.+|.++|+++..+..+++++++++||+++|||........ . ...+.....+...  .++.+.+ ++|+|+
T Consensus       142 ~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lr~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~i~~g~g~~~r~~i~v  221 (321)
T d1rpna_         142 FYPRSPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFA  221 (321)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEH
T ss_pred             ccccChhHHHHHHHHHHHHHHHhhcCCcEEEEEEecccCCCccccccHHHHHHHHHHHHhCCCCcEEECCCCeEEccEEe
Confidence            356889999999999999999999999999999999999975543221 1 2223344445443  3455555 799999


Q ss_pred             HHHHHHHHHhhcCCCCCceEEE-eccccCHHHHHHHHHhhCCCCC---CCCccCCccccCCcCcccCcHHH-HHcCCccc
Q 020104          237 DDVARAHIFLLEYPDAKGRYIC-SSHTLTIQEMAEFLSAKYPEYP---IPTVDSLAEIEGYRAPGSSSKKL-LDAGFRYN  311 (331)
Q Consensus       237 ~D~a~~~~~~~~~~~~~~~~~~-~~~~~s~~e~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~k~-~~lg~~~~  311 (331)
                      +|+|+++.++++++. ++.||+ +++..|+.++++.+.+..+...   +.......+.........|++|+ +.|||+|+
T Consensus       222 ~D~~~~~~~~~~~~~-~~~~ni~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~~~~~d~~k~~k~lG~~P~  300 (321)
T d1rpna_         222 GDYVEAMWLMLQQDK-ADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPR  300 (321)
T ss_dssp             HHHHHHHHHHHHSSS-CCCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGGCCSSCCCBCCBCTHHHHHHHCCCCC
T ss_pred             HHHHHHHHHHHhcCC-cCCceecccccceehhhhHHHHHHhCCCccceeecCCCCCCCCccCCccCCHHHHHHHHCCCcC
Confidence            999999999998875 455664 6788999999999999887321   11100111112344567799999 78999999


Q ss_pred             cChhhhHHHHHHHHHH
Q 020104          312 YGIDEMFDEAIQCCKE  327 (331)
Q Consensus       312 ~~~~e~i~~~~~~~~~  327 (331)
                      ++|+|+|+++++|+.+
T Consensus       301 ~~l~e~i~~tv~~~l~  316 (321)
T d1rpna_         301 TSLDELIRMMVEADLR  316 (321)
T ss_dssp             SCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999999999865

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-44  Score=314.70  Aligned_cols=305  Identities=18%  Similarity=0.131  Sum_probs=223.2

Q ss_pred             ceE-EEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCC--CCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            6 GRV-CVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLP--GASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         6 ~~i-lVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      ||| ||||||||||++|+++|+++||+|++++|..+....   ..+..+....  ....+++++.+|++|++.+..++. 
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~   77 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNT---GRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINE   77 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCC---TTTGGGC---------CEEEEECCTTCHHHHHHHHHH
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccch---hhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhh
Confidence            578 999999999999999999999999999997632221   1222221111  113578999999999999999986 


Q ss_pred             -CccEEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcCC--ccEEEEecccceeecCCCCCCcccCCCCCChh
Q 020104           82 -GCTGVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSGT--VKRVVYTSSNAAVFYNDKDVDMMDETFWSDVD  156 (331)
Q Consensus        82 -~~d~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~  156 (331)
                       ++++|+|+++....  ...++. ..+++|+.++.+++++|++++.  .++|||+||..|||  .....+++|+++    
T Consensus        78 ~~~~~v~~~~a~~~~~~~~~~~~-~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg--~~~~~~~~E~~~----  150 (347)
T d1t2aa_          78 VKPTEIYNLGAQSHVKISFDLAE-YTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYG--KVQEIPQKETTP----  150 (347)
T ss_dssp             HCCSEEEECCSCCCHHHHHHSHH-HHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTC--SCSSSSBCTTSC----
T ss_pred             cccceeeeeeeccccchhhccch-hhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheec--CCCCCCCCCCCC----
Confidence             67899999986542  223344 6789999999999999999861  34899999999995  455678899885    


Q ss_pred             hhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCC--ccHHHHHHHHhCCC--cccccCCC-c
Q 020104          157 YIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFA--GSVRSSLALILGNR--EEYGFLLN-T  231 (331)
Q Consensus       157 ~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~-~  231 (331)
                           ..|.++||.+|.++|++++.+.++++++++++||+++|||+......  .....+.....+..  ..++.+.+ +
T Consensus       151 -----~~P~~~Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~g~~~r  225 (347)
T d1t2aa_         151 -----FYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKR  225 (347)
T ss_dssp             -----CCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEE
T ss_pred             -----CCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCccccccceeeehhhcCCcceeecCCCccee
Confidence                 35788999999999999999999999999999999999997554321  11112223333333  33444544 7


Q ss_pred             cceeHHHHHHHHHHhhcCCCCCceEEEeccccCHHHHHHHHHhhCCCCCCCC---ccCCc-----------------ccc
Q 020104          232 SMVHVDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPT---VDSLA-----------------EIE  291 (331)
Q Consensus       232 ~~i~v~D~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~~~~~~~~---~~~~~-----------------~~~  291 (331)
                      +|+|++|+++++..++++...+..+...+...++++....+....+......   .....                 +..
T Consensus       226 ~~i~v~D~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~  305 (347)
T d1t2aa_         226 DWGHAKDYVEAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPT  305 (347)
T ss_dssp             CCEEHHHHHHHHHHHHHSSSCCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSS
T ss_pred             eeeEecHHHHHHHHHhhcCCCccceeccccccccchhhhhhhhhhcceeeecccchhhhhhhhhcCCceeeecccCCCCC
Confidence            9999999999999999887554444456778999999999988766221000   00000                 001


Q ss_pred             CCcCcccCcHHH-HHcCCccccChhhhHHHHHHHH
Q 020104          292 GYRAPGSSSKKL-LDAGFRYNYGIDEMFDEAIQCC  325 (331)
Q Consensus       292 ~~~~~~~~~~k~-~~lg~~~~~~~~e~i~~~~~~~  325 (331)
                      ......+|++|+ +.|||+|+++|+|+|++++++.
T Consensus       306 ~~~~~~~d~skak~~Lgw~P~~sl~e~i~~~I~~~  340 (347)
T d1t2aa_         306 EVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHAD  340 (347)
T ss_dssp             CCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHH
T ss_pred             CcCEeeECHHHHHHHHCCCcCCCHHHHHHHHHHHH
Confidence            223456799999 8899999999999999998654

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=4.5e-44  Score=313.36  Aligned_cols=308  Identities=16%  Similarity=0.107  Sum_probs=228.3

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCC--CCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLP--GASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      +|++||||||||||+||+++|+++||+|++++|..+...   ..++..+....  .....++++.+|+.+.+.+...+. 
T Consensus         1 ~k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~   77 (339)
T d1n7ha_           1 RKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFN---TQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDV   77 (339)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCC---CTTTTTTC--------CCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccc---hhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhh
Confidence            378999999999999999999999999999999762111   12222222111  113568899999999999998885 


Q ss_pred             -CccEEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcC----CccEEEEecccceeecCCCCCCcccCCCCCC
Q 020104           82 -GCTGVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSG----TVKRVVYTSSNAAVFYNDKDVDMMDETFWSD  154 (331)
Q Consensus        82 -~~d~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~  154 (331)
                       ++|+|||+|+....  ...++. ..++.|+.++.++++++++..    ...++++.||..+++   ....+++|+++  
T Consensus        78 ~~~D~Vih~Aa~~~~~~~~~~p~-~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~---~~~~~~~E~~~--  151 (339)
T d1n7ha_          78 IKPDEVYNLAAQSHVAVSFEIPD-YTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFG---STPPPQSETTP--  151 (339)
T ss_dssp             HCCSEEEECCSCCCHHHHHHSHH-HHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGT---TSCSSBCTTSC--
T ss_pred             hccchhhhccccccccccccCcc-ccccccccccchhhhhhhhcccccccceeeeecccceecc---cCCCCCCCCCC--
Confidence             68999999997552  223555 888999999999999998642    134788888877653   34567888885  


Q ss_pred             hhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCc-cHH-HHHHHHhCCCc--ccccCCC
Q 020104          155 VDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAG-SVR-SSLALILGNRE--EYGFLLN  230 (331)
Q Consensus       155 ~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~-~~~-~~~~~~~~~~~--~~~~~~~  230 (331)
                             ..|.+.|+.+|..+|+++..+.+.++++++++||+++|||........ .+. .......+...  ..+.+.+
T Consensus       152 -------~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~  224 (339)
T d1n7ha_         152 -------FHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQA  224 (339)
T ss_dssp             -------CCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTTC
T ss_pred             -------CCCcchhhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCCCCCCcchhhHHHHHHhcCCCCeEEeCCCCc
Confidence                   357889999999999999999999999999999999999975543211 111 12233334332  2333444


Q ss_pred             -ccceeHHHHHHHHHHhhcCCCCCceEEEeccccCHHHHHHHHHhhCCCCCCCC---ccCCccccCCcCcccCcHHH-HH
Q 020104          231 -TSMVHVDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPT---VDSLAEIEGYRAPGSSSKKL-LD  305 (331)
Q Consensus       231 -~~~i~v~D~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~k~-~~  305 (331)
                       ++|+|++|+++++..+++++..++.+++.+...++.++++.+.+.++......   .....+.........|++|+ +.
T Consensus       225 ~rd~~~v~D~a~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~d~~Kak~~  304 (339)
T d1n7ha_         225 SRDWGFAGDYVEAMWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKAKEV  304 (339)
T ss_dssp             EEECEEHHHHHHHHHHHHTSSSCCEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGGGSCSSCCCBCCBCCHHHHHH
T ss_pred             cccceeeehHHHHHHHHHhcCCCCccccccccccccchhhhhhhhhhhcccCceeeeccCCCCCCCCCeeeECHHHHHHH
Confidence             79999999999999999998777777778888999999999999887321111   00111112334566799999 88


Q ss_pred             cCCccccChhhhHHHHHHHHHHc
Q 020104          306 AGFRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       306 lg~~~~~~~~e~i~~~~~~~~~~  328 (331)
                      |||+|+++|+|+|+++++||++.
T Consensus       305 LGw~P~~~le~gi~~ti~~~~~~  327 (339)
T d1n7ha_         305 LGWKPQVGFEKLVKMMVDEDLEL  327 (339)
T ss_dssp             HCCCCCSCHHHHHHHHHHHHHHH
T ss_pred             HCCCcCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999653

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-43  Score=311.27  Aligned_cols=305  Identities=19%  Similarity=0.248  Sum_probs=223.5

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHH-HhcCc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDA-AIAGC   83 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~-~~~~~   83 (331)
                      |||||||||||||++|+++|+++| ++|+++++..     ..   ...+..    .++++++.+|+++.+++.+ +..++
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~-----~~---~~~~~~----~~~~~~i~~Di~~~~~~~~~~~~~~   68 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGS-----DA---ISRFLN----HPHFHFVEGDISIHSEWIEYHVKKC   68 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCC-----GG---GGGGTT----CTTEEEEECCTTTCSHHHHHHHHHC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCC-----cc---hhhhcc----CCCeEEEECccCChHHHHHHHHhCC
Confidence            489999999999999999999998 5899998865     11   111111    2689999999998877666 55689


Q ss_pred             cEEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhc
Q 020104           84 TGVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKL  161 (331)
Q Consensus        84 d~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~  161 (331)
                      |+|||+|+....  ...++. ..+++|+.++.+++++|.+.+  .+++++||..+|+.  ......+|..+...  ..+.
T Consensus        69 d~Vih~a~~~~~~~~~~~~~-~~~~~nv~gt~~ll~~~~~~~--~~~~~~ss~~~~~~--~~~~~~~~~~~~~~--~~~~  141 (342)
T d2blla1          69 DVVLPLVAIATPIEYTRNPL-RVFELDFEENLRIIRYCVKYR--KRIIFPSTSEVYGM--CSDKYFDEDHSNLI--VGPV  141 (342)
T ss_dssp             SEEEECBCCCCHHHHHHSHH-HHHHHHTHHHHHHHHHHHHTT--CEEEEECCGGGGBT--CCCSSBCTTTCCCB--CCCT
T ss_pred             CccccccccccccccccCCc-ccccccccccccccccccccc--cccccccccccccc--cccccccccccccc--cccc
Confidence            999999997652  223444 789999999999999999988  47788999998863  33333444332211  1123


Q ss_pred             CCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCC------ccHHHH-HHHHhCCCcc-cccCCC-cc
Q 020104          162 DSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFA------GSVRSS-LALILGNREE-YGFLLN-TS  232 (331)
Q Consensus       162 ~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~------~~~~~~-~~~~~~~~~~-~~~~~~-~~  232 (331)
                      ..|.+.|+.+|.++|+++..++++++++++++||+.+||++......      ..+..+ ...+.|.+.. ++.+.. ++
T Consensus       142 ~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~r~  221 (342)
T d2blla1         142 NKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRC  221 (342)
T ss_dssp             TCGGGHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEE
T ss_pred             CCCcchhhhcccchhhhhhhhhcccCceeEEeeccccccccccccccccccccccchHHHHHHHhCCCccccCCCCeeee
Confidence            46778999999999999999999999999999999999997554321      122222 3455666644 444455 89


Q ss_pred             ceeHHHHHHHHHHhhcCCC---CCceEEEe-cc-ccCHHHHHHHHHhhCCCCC----CCCccCCc---------cc-cCC
Q 020104          233 MVHVDDVARAHIFLLEYPD---AKGRYICS-SH-TLTIQEMAEFLSAKYPEYP----IPTVDSLA---------EI-EGY  293 (331)
Q Consensus       233 ~i~v~D~a~~~~~~~~~~~---~~~~~~~~-~~-~~s~~e~~~~i~~~~~~~~----~~~~~~~~---------~~-~~~  293 (331)
                      |+|++|+|+++..+++++.   .+++||++ ++ .+|+.|+++.+.+..+...    .+......         .. ...
T Consensus       222 ~i~v~D~~~a~~~~~~~~~~~~~g~~~Nig~~~~~~t~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (342)
T d2blla1         222 FTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDV  301 (342)
T ss_dssp             CEEHHHHHHHHHHHHHCGGGTTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC------------C
T ss_pred             ecccccccceeeeehhhccccCCCeEEEEecccchhHHHHHHHHHHHHhCCCccccccCcccccceeccccccccccccc
Confidence            9999999999999998743   35689974 54 4899999999988665211    11100000         00 122


Q ss_pred             cCcccCcHHH-HHcCCccccChhhhHHHHHHHHHHcC
Q 020104          294 RAPGSSSKKL-LDAGFRYNYGIDEMFDEAIQCCKEKG  329 (331)
Q Consensus       294 ~~~~~~~~k~-~~lg~~~~~~~~e~i~~~~~~~~~~~  329 (331)
                      .....|++|+ +.|||+|+++++|+|+++++||+++.
T Consensus       302 ~~~~~d~~k~~~~lgw~P~~sleegl~~ti~~y~~~~  338 (342)
T d2blla1         302 EHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTV  338 (342)
T ss_dssp             CCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHS
T ss_pred             cccccCHHHHHHHHCCCcCCCHHHHHHHHHHHHHhCc
Confidence            3456799999 88999999999999999999997763

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-43  Score=311.39  Aligned_cols=309  Identities=18%  Similarity=0.193  Sum_probs=223.9

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcc--cCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPE--HRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      |||||||||||||++|+++|+++|++|++++|......  .......+.+...  ...+++++.+|++|.+.+.+++.  
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~l~~~~~~~   80 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQEL--TGRSVEFEEMDILDQGALQRLFKKY   80 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHH--HTCCCEEEECCTTCHHHHHHHHHHC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHh--cCCCcEEEEeecccccccccccccc
Confidence            69999999999999999999999999999986331110  1111222222221  12678999999999999999875  


Q ss_pred             CccEEEEecccCC--CCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhh
Q 020104           82 GCTGVLHVATPVD--FEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIR  159 (331)
Q Consensus        82 ~~d~Vih~a~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~  159 (331)
                      .+++++|+||..+  ....++. ..+++|+.++.++++++++.+ +++|+|+||+.+|+....  ....++.        
T Consensus        81 ~~~~i~h~Aa~~~~~~~~~~p~-~~~~~Nv~gt~~l~~~~~~~~-v~~~i~~ss~~~~~~~~~--~~~~~~~--------  148 (346)
T d1ek6a_          81 SFMAVIHFAGLKAVGESVQKPL-DYYRVNLTGTIQLLEIMKAHG-VKNLVFSSSATVYGNPQY--LPLDEAH--------  148 (346)
T ss_dssp             CEEEEEECCSCCCHHHHHHCHH-HHHHHHHHHHHHHHHHHHHTT-CCEEEEEEEGGGGCSCSS--SSBCTTS--------
T ss_pred             ccccccccccccCcHhhHhCHH-HHHHhhhcccccccchhhhcC-cccccccccceeeecccc--ccccccc--------
Confidence            5778999999755  2233566 889999999999999999999 999999999999964322  1222221        


Q ss_pred             hcCCCCchhHhhHHHHHHHHHHHHHH-cCCcEEEeccCceeCCCCCCC--------CCccHHHHHHHHhCCCc-------
Q 020104          160 KLDSWGKSYAISKTLTERAALEFAEE-HGLDLVTLIPSMVVGPFICPK--------FAGSVRSSLALILGNRE-------  223 (331)
Q Consensus       160 ~~~~~~~~Y~~~K~~~e~~~~~~~~~-~~~~~~ilRp~~v~G~~~~~~--------~~~~~~~~~~~~~~~~~-------  223 (331)
                      +...|.++|+.+|..+|+.+..+++. .+++++++||+.+||+.....        ....+..+.....+...       
T Consensus       149 ~~~~~~~~Y~~~k~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~  228 (346)
T d1ek6a_         149 PTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGN  228 (346)
T ss_dssp             CCCCCSSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECS
T ss_pred             cccccCChHHHHHHHHHHHHHHHHHhccCCceEEEeecceeccCCCCCcCccccccHHHHHHHHHHHHHcCCCcEEEcCC
Confidence            12356779999999999999998776 489999999999999865421        11223333443333322       


Q ss_pred             --ccccCCC-ccceeHHHHHHHHHHhhcC---CCCCceEEEe-ccccCHHHHHHHHHhhCCCCCCCCccCCccccCCcCc
Q 020104          224 --EYGFLLN-TSMVHVDDVARAHIFLLEY---PDAKGRYICS-SHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAP  296 (331)
Q Consensus       224 --~~~~~~~-~~~i~v~D~a~~~~~~~~~---~~~~~~~~~~-~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  296 (331)
                        ....+.+ ++|+|++|+|+++..++..   ...+++||++ ++.+|+.|+++.+.+.++. ..+......+..+....
T Consensus       229 ~~~~~~g~~~Rdfi~v~D~a~~~~~~~~~~~~~~~~~i~Ni~~~~~~s~~dl~~~i~~~~~~-~~~~~~~~~~~~e~~~~  307 (346)
T d1ek6a_         229 DYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGK-KIPYKVVARREGDVAAC  307 (346)
T ss_dssp             CSSSSSSSCEECEEEHHHHHHHHHHHHHHHTTTCCEEEEEECCSCCEEHHHHHHHHHHHHCS-CCCEEEECCCTTCCSEE
T ss_pred             cccCCCCCeeEeEEEEEeccchhhhhccccccccCceEEEeCCCCcccHHHHHHHHHHHhCC-CCCeEECCCCCCCCCEe
Confidence              2223333 7999999999999887653   3344589964 5789999999999998873 12210011111334456


Q ss_pred             ccCcHHH-HHcCCccccChhhhHHHHHHHHHHcC
Q 020104          297 GSSSKKL-LDAGFRYNYGIDEMFDEAIQCCKEKG  329 (331)
Q Consensus       297 ~~~~~k~-~~lg~~~~~~~~e~i~~~~~~~~~~~  329 (331)
                      ..|++|+ +.|||+|+++++|+|+++++||+++.
T Consensus       308 ~~d~~k~~~~lgw~p~~slee~I~~~i~w~~~n~  341 (346)
T d1ek6a_         308 YANPSLAQEELGWTAALGLDRMCEDLWRWQKQNP  341 (346)
T ss_dssp             CBCCHHHHHTTCCCCCCCHHHHHHHHHHHHHHCT
T ss_pred             eECHHHHHHHHCCCcCCCHHHHHHHHHHHHHhCH
Confidence            7899999 88999999999999999999999873

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-43  Score=310.51  Aligned_cols=304  Identities=17%  Similarity=0.191  Sum_probs=223.3

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--Cc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--GC   83 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~   83 (331)
                      |.|||||||||||++|+++|+++|++|+++++...    ............  ...+++++.+|++|.+++..++.  ++
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~----~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~~~~~   75 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSN----STYDSVARLEVL--TKHHIPFYEVDLCDRKGLEKVFKEYKI   75 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS----CCTHHHHHHHHH--HTSCCCEEECCTTCHHHHHHHHHHSCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCC----cchhHHHhHHhh--cccCCeEEEeecCCHHHHHHHHhccCC
Confidence            46999999999999999999999999999986441    111111111111  12578999999999999999886  79


Q ss_pred             cEEEEecccCC--CCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCC--CCCCcccCCCCCChhhhh
Q 020104           84 TGVLHVATPVD--FEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYND--KDVDMMDETFWSDVDYIR  159 (331)
Q Consensus        84 d~Vih~a~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~--~~~~~~~E~~~~~~~~~~  159 (331)
                      |+|||+|+...  ....++. .+..+|+.++.+++++|++.+ +++||++||.++|+...  ....+++|+++       
T Consensus        76 d~VihlAa~~~~~~~~~~~~-~~~~~N~~~t~~ll~~~~~~~-i~~~i~~SS~~vyg~~~~~~~~~~~~e~~~-------  146 (347)
T d1z45a2          76 DSVIHFAGLKAVGESTQIPL-RYYHNNILGTVVLLELMQQYN-VSKFVFSSSATVYGDATRFPNMIPIPEECP-------  146 (347)
T ss_dssp             CEEEECCSCCCHHHHHHSHH-HHHHHHHHHHHHHHHHHHHHT-CCEEEEEEEGGGGCCGGGSTTCCSBCTTSC-------
T ss_pred             CEEEEccccccccccccCcc-cccccchhhhHHHHHHHHhcc-cceEEeecceeeecCcccCCCCCccccccC-------
Confidence            99999999765  2223444 788999999999999999998 99999999999997432  23456777664       


Q ss_pred             hcCCCCchhHhhHHHHHHHHHHHHHH--cCCcEEEeccCceeCCCCCCCC--------CccHHHHHHHHhCCCccc---c
Q 020104          160 KLDSWGKSYAISKTLTERAALEFAEE--HGLDLVTLIPSMVVGPFICPKF--------AGSVRSSLALILGNREEY---G  226 (331)
Q Consensus       160 ~~~~~~~~Y~~~K~~~e~~~~~~~~~--~~~~~~ilRp~~v~G~~~~~~~--------~~~~~~~~~~~~~~~~~~---~  226 (331)
                        ..|.++|+.+|.++|++++.+.+.  .+++++++||+++||+......        ...+..+.....+....+   +
T Consensus       147 --~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~lR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~i~g  224 (347)
T d1z45a2         147 --LGPTNPYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFG  224 (347)
T ss_dssp             --CCCCSHHHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC-
T ss_pred             --CCCCChhHhHHHHHHHHHHHHHHhhccCCcEEEEeecceEeecCCCccCCCccccHHHHHHHHHHHHhcCCCCeEEeC
Confidence              356789999999999999998764  4789999999999998543211        123444444444443222   2


Q ss_pred             cC------CC-ccceeHHHHHHHHHHhhcCC-------CCCceEEE-eccccCHHHHHHHHHhhCCC-CCCCCccCCccc
Q 020104          227 FL------LN-TSMVHVDDVARAHIFLLEYP-------DAKGRYIC-SSHTLTIQEMAEFLSAKYPE-YPIPTVDSLAEI  290 (331)
Q Consensus       227 ~~------~~-~~~i~v~D~a~~~~~~~~~~-------~~~~~~~~-~~~~~s~~e~~~~i~~~~~~-~~~~~~~~~~~~  290 (331)
                      .+      .. ++++++.|.+.+++.+++..       ..+++||+ +++++|+.|+++.+.+..+. .....  ...+.
T Consensus       225 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~~~~~s~~e~~~~i~~~~~~~~~~~~--~~~~~  302 (347)
T d1z45a2         225 DDYDSRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKV--TGRRA  302 (347)
T ss_dssp             -----CCSSCEECEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC---------
T ss_pred             CCccccCCceeeeeeeeecccccccccccccccccccccccccceecCCCcccHHHHHHHHHHHHCCCCceEe--CCCCC
Confidence            21      12 58999999999988877631       12457887 56889999999999998872 22211  11111


Q ss_pred             cCCcCcccCcHHH-HHcCCccccChhhhHHHHHHHHHHc
Q 020104          291 EGYRAPGSSSKKL-LDAGFRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       291 ~~~~~~~~~~~k~-~~lg~~~~~~~~e~i~~~~~~~~~~  328 (331)
                      ........|++|+ +.|||+|.++++|+|+++++|++++
T Consensus       303 ~~~~~~~~d~sk~~~~lGw~p~~~lee~i~~ti~w~~~n  341 (347)
T d1z45a2         303 GDVLNLTAKPDRAKRELKWQTELQVEDSCKDLWKWTTEN  341 (347)
T ss_dssp             --CCCCCBCCHHHHHHTCCCCCCCHHHHHHHHHHHHHHC
T ss_pred             CCCCEeeECHHHHHHHHCCCCCCCHHHHHHHHHHHHHhC
Confidence            3344567899999 8899999999999999999999987

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.6e-43  Score=306.73  Aligned_cols=289  Identities=16%  Similarity=0.161  Sum_probs=216.8

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--C
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--G   82 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~   82 (331)
                      +|||||||||||||++|+++|+++|+.|+++.+..                           ..|+.|.+.+.++++  +
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~---------------------------~~~~~~~~~~~~~~~~~~   54 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD---------------------------ELNLLDSRAVHDFFASER   54 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT---------------------------TCCTTCHHHHHHHHHHHC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCch---------------------------hccccCHHHHHHHHhhcC
Confidence            57999999999999999999999999998765443                           157888888888875  6


Q ss_pred             ccEEEEecccCCCC---CCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhh
Q 020104           83 CTGVLHVATPVDFE---DKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIR  159 (331)
Q Consensus        83 ~d~Vih~a~~~~~~---~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~  159 (331)
                      +|.|+|+|+.....   ..++. +.+++|+.++.+++++|++.+ ++||||+||.++|+  .....+++|+.+....   
T Consensus        55 ~d~v~~~a~~~~~~~~~~~~~~-~~~~~Nv~gt~~ll~~a~~~~-v~~~i~~SS~~vyg--~~~~~~~~E~~~~~~~---  127 (315)
T d1e6ua_          55 IDQVYLAAAKVGGIVANNTYPA-DFIYQNMMIESNIIHAAHQND-VNKLLFLGSSCIYP--KLAKQPMAESELLQGT---  127 (315)
T ss_dssp             CSEEEECCCCCCCHHHHHHCHH-HHHHHHHHHHHHHHHHHHHTT-CCEEEEECCGGGSC--TTCCSSBCGGGTTSSC---
T ss_pred             CCEEEEcchhccccccchhhHH-HHHHHHHHHHHHHHHHHHHcC-CCEEEEECCceEcC--CCCCCCccCCccccCC---
Confidence            89999999765421   22333 678999999999999999998 99999999999996  4445678887653221   


Q ss_pred             hcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCc--cHHHH------HHHHhCCC-cccccCCC
Q 020104          160 KLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAG--SVRSS------LALILGNR-EEYGFLLN  230 (331)
Q Consensus       160 ~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~--~~~~~------~~~~~~~~-~~~~~~~~  230 (331)
                       +.+|.++|+.+|.++|++++.+.++++++++++||++||||+.......  .....      .....+.. ...+.+..
T Consensus       128 -~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~  206 (315)
T d1e6ua_         128 -LEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTP  206 (315)
T ss_dssp             -CCGGGHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCC
T ss_pred             -CCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCCCCccccccceeeeccchhhhhccCCceEEcCCCce
Confidence             1234568999999999999999999999999999999999987543321  11111      11122322 23333444


Q ss_pred             -ccceeHHHHHHHHHHhhcCCC---------CCceEEE-eccccCHHHHHHHHHhhCCCCCCCCccCCccccCCcCcccC
Q 020104          231 -TSMVHVDDVARAHIFLLEYPD---------AKGRYIC-SSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSS  299 (331)
Q Consensus       231 -~~~i~v~D~a~~~~~~~~~~~---------~~~~~~~-~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (331)
                       ++|+|++|+++++..++.+..         ..+.++. .+...++.++++.+.+..+....... ...+........+|
T Consensus       207 ~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~i~~-~~~~~~~~~~~~~d  285 (315)
T d1e6ua_         207 MREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVF-DASKPDGTPRKLLD  285 (315)
T ss_dssp             EECEEEHHHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEE-ETTSCCCCSBCCBC
T ss_pred             EEEEEEeehhHHHHHHhhhhccccccccccccccccccCCCcchHHHHHHHHHHHHhCCCcceEE-CCCCCCCCceeccC
Confidence             799999999999999886542         2345665 56789999999999998773221110 00111233345689


Q ss_pred             cHHHHHcCCccccChhhhHHHHHHHHHHcC
Q 020104          300 SKKLLDAGFRYNYGIDEMFDEAIQCCKEKG  329 (331)
Q Consensus       300 ~~k~~~lg~~~~~~~~e~i~~~~~~~~~~~  329 (331)
                      ++|++.|||+|+++++|+|+++++||+++.
T Consensus       286 ~sk~k~Lg~~p~~~l~e~i~~ti~w~~~N~  315 (315)
T d1e6ua_         286 VTRLHQLGWYHEISLEAGLASTYQWFLENQ  315 (315)
T ss_dssp             CHHHHHTTCCCCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHHHcC
Confidence            999977999999999999999999999864

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=5.1e-43  Score=312.63  Aligned_cols=319  Identities=14%  Similarity=0.178  Sum_probs=220.1

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEec------------CCCCcccCCccccccccCCCCCCCcEEEEeCCCCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVR------------SELDPEHRNSKDLSFLKNLPGASERLRIFHADLSH   72 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~   72 (331)
                      +|||||||||||||++|+++|+++||+|++++.            ....+.......+......  ..++++++.+|++|
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~Dl~d   78 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKAL--TGKSIELYVGDICD   78 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHH--HCCCCEEEESCTTS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhh--cCCCcEEEEccCCC
Confidence            479999999999999999999999999999861            0000000111111111111  12578999999999


Q ss_pred             CccHHHHhc--CccEEEEecccCCC--CCCCh--hhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCc
Q 020104           73 PDGFDAAIA--GCTGVLHVATPVDF--EDKEP--EEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        73 ~~~~~~~~~--~~d~Vih~a~~~~~--~~~~~--~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                      .+.+.++++  ++|+|||+||....  +..++  ....+++|+.++.+++++|++.+..+++++.||..+|+...   .+
T Consensus        79 ~~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~---~~  155 (393)
T d1i24a_          79 FEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPN---ID  155 (393)
T ss_dssp             HHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCS---SC
T ss_pred             HHHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeeccccccccccc---cc
Confidence            999999997  57999999986541  11221  22678999999999999999988445677888777764221   12


Q ss_pred             ccCCCC-----CChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCC--------------
Q 020104          147 MDETFW-----SDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKF--------------  207 (331)
Q Consensus       147 ~~E~~~-----~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~--------------  207 (331)
                      ..|...     ...+....+..|.++|+.+|+.+|.++..++++++++++++||+++|||+.....              
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~  235 (393)
T d1i24a_         156 IEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAV  235 (393)
T ss_dssp             BCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTT
T ss_pred             cccccccccccccccccccccccccHHHHHhhhhcccccccccccceeeeecccccccCCCccccccccccccccccccc
Confidence            222110     0000011124567899999999999999999999999999999999999754311              


Q ss_pred             -CccHHHH-HHHHhCCCcc-cccCCC-ccceeHHHHHHHHHHhhcCCCCCceE---EEeccccCHHHHHHHHHhhCCCCC
Q 020104          208 -AGSVRSS-LALILGNREE-YGFLLN-TSMVHVDDVARAHIFLLEYPDAKGRY---ICSSHTLTIQEMAEFLSAKYPEYP  280 (331)
Q Consensus       208 -~~~~~~~-~~~~~~~~~~-~~~~~~-~~~i~v~D~a~~~~~~~~~~~~~~~~---~~~~~~~s~~e~~~~i~~~~~~~~  280 (331)
                       ...+..+ .....+++.. ++.+.+ ++|+|++|+++++..++++....+.+   +.+++.+|+.|+++.+.+..+...
T Consensus       236 ~~~~i~~~~~~~~~~~~~~i~g~~~~~rd~v~v~D~~~a~~~~~~~~~~~g~~~~~~~~~~~~si~el~~~i~~~~~~~~  315 (393)
T d1i24a_         236 FGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVNELASLVTKAGSKLG  315 (393)
T ss_dssp             TCCHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCCTTCEEEEEECSEEEEHHHHHHHHHHHHHTTT
T ss_pred             cccchhhhhHHhhcCCeeEEeeecccccccccccchHHHHHHHHHhhcccceeeeecCCCCeeEHHHHHHHHHHHHHhhC
Confidence             1122333 3445566533 455555 89999999999999999987766644   345678999999999988654222


Q ss_pred             C--CCccC-Cccc-cCCcCcccCcHHHHHcCCccccChhhhHHHHHHHHHHc
Q 020104          281 I--PTVDS-LAEI-EGYRAPGSSSKKLLDAGFRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       281 ~--~~~~~-~~~~-~~~~~~~~~~~k~~~lg~~~~~~~~e~i~~~~~~~~~~  328 (331)
                      .  +.... .+.. ........|++|++.|||+|+++++++++++++|+++.
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~d~~k~~~LGw~P~~~~~~~i~~~~~~~~~~  367 (393)
T d1i24a_         316 LDVKKMTVPNPRVEAEEHYYNAKHTKLMELGLEPHYLSDSLLDSLLNFAVQF  367 (393)
T ss_dssp             CCCCEEEECCSSCSCSSCCCCBCCCHHHHTTCCCCCCCHHHHHHHHHHHHHT
T ss_pred             CCcceeeccCCCCCCCccEecCCHHHHHHcCCccccCHHHHHHHHHHHHHHH
Confidence            1  11000 0111 22345567899997799999999999999999998765

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=100.00  E-value=7.7e-42  Score=303.87  Aligned_cols=311  Identities=20%  Similarity=0.194  Sum_probs=220.9

Q ss_pred             CceEEEecCcchhHHHHHHHHHH-CCCeEEEEecCCCC---c-ccCCcccc-ccccC-----CCCCCCcEEEEeCCCCCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLD-HGYSVTTTVRSELD---P-EHRNSKDL-SFLKN-----LPGASERLRIFHADLSHP   73 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~---~-~~~~~~~~-~~~~~-----~~~~~~~~~~~~~D~~~~   73 (331)
                      .|||||||||||||++|+++|++ .||+|+++++-...   . .....+.. ..+..     ......++.++.+|++|.
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~   81 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE   81 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccCH
Confidence            35999999999999999999986 68999998751100   0 00010110 11110     111235688999999999


Q ss_pred             ccHHHHhc---CccEEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCC-----
Q 020104           74 DGFDAAIA---GCTGVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKD-----  143 (331)
Q Consensus        74 ~~~~~~~~---~~d~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~-----  143 (331)
                      +.+.++++   ++|+|||+|+....  ...++. ..++.|+.++.++++++++.+ +++++++||..+|+.....     
T Consensus        82 ~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~-~~~~~N~~~t~~~l~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~  159 (383)
T d1gy8a_          82 DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPL-KYYDNNVVGILRLLQAMLLHK-CDKIIFSSSAAIFGNPTMGSVSTN  159 (383)
T ss_dssp             HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHH-HHHHHHHHHHHHHHHHHHHTT-CCEEEEEEEGGGTBSCCC-----C
T ss_pred             HHhhhhhhccceeehhhcccccccccccccccc-cccccccccccccchhhhccC-Cccccccccccccccccccccccc
Confidence            99999885   57999999987552  222343 788999999999999999999 8999999999988633221     


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCc-------cHHHHHH
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAG-------SVRSSLA  216 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~-------~~~~~~~  216 (331)
                      ..++.|+++         ..|.++|+.+|..+|++++.+.+.++++++++||+++|||+.......       .+..+..
T Consensus       160 ~~~~~e~~~---------~~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~~~~~~~~~~~~~~ip~ii~  230 (383)
T d1gy8a_         160 AEPIDINAK---------KSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILG  230 (383)
T ss_dssp             CCCBCTTSC---------CBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHH
T ss_pred             ccccccccC---------CCCCCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccCccccccccccccchhHHHHHH
Confidence            223444442         467889999999999999999999999999999999999987654322       1111111


Q ss_pred             -HH----------------hCCC-------cccccCCC-ccceeHHHHHHHHHHhhcC---------CCCCceEEE-ecc
Q 020104          217 -LI----------------LGNR-------EEYGFLLN-TSMVHVDDVARAHIFLLEY---------PDAKGRYIC-SSH  261 (331)
Q Consensus       217 -~~----------------~~~~-------~~~~~~~~-~~~i~v~D~a~~~~~~~~~---------~~~~~~~~~-~~~  261 (331)
                       .+                .+.+       ...+++.+ ++|+|++|+|++++.+++.         ....++||+ +++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~~~~~~~~~~~~~i~Ni~s~~  310 (383)
T d1gy8a_         231 RVMSDIAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSR  310 (383)
T ss_dssp             HHHHHHSCC-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSC
T ss_pred             HHHhhccccccchhhhhhhcCCceEEeCCccccCCCCeEEeeEEHHHHHHHHHHHHhhhccccccccccCccEEEeCCCC
Confidence             11                1111       11222344 7899999999999998863         122457987 568


Q ss_pred             ccCHHHHHHHHHhhCCC-CCCCCccCCccccCCcCcccCcHHH-HHcCCccccChhhhHHHH-HHHHHHc
Q 020104          262 TLTIQEMAEFLSAKYPE-YPIPTVDSLAEIEGYRAPGSSSKKL-LDAGFRYNYGIDEMFDEA-IQCCKEK  328 (331)
Q Consensus       262 ~~s~~e~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~k~-~~lg~~~~~~~~e~i~~~-~~~~~~~  328 (331)
                      ++|+.|+++.+.+..+. .++..  ...+.........|++|+ +.|||+|+++++|+|+++ ++|++++
T Consensus       311 ~~s~~el~~~i~~~~~~~~~~~~--~~~~~~d~~~~~~d~~k~~k~LGw~P~~~l~e~i~~t~~~w~~~~  378 (383)
T d1gy8a_         311 GYSVREVIEVARKTTGHPIPVRE--CGRREGDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQRTH  378 (383)
T ss_dssp             CEEHHHHHHHHHHHHCCCCCEEE--ECCCTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHHTC
T ss_pred             ceeHHHHHHHHHHHhCCCCceEE--CCCCCCCcCEeeeCHHHHHHHHCCccCCCHHHHHHHHHHHHHHhC
Confidence            89999999999998772 22111  111112334567799999 889999999999999887 6899887

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=100.00  E-value=5.1e-42  Score=300.35  Aligned_cols=312  Identities=24%  Similarity=0.309  Sum_probs=226.0

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      +|+|||||||||||++|+++|+++|++|++++|+.     ++...+...............+.+|+.|.+++.+++.++|
T Consensus        11 gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~-----~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~   85 (342)
T d1y1pa1          11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSA-----SKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAA   85 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH-----HHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCS
T ss_pred             cCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCc-----hhHHHHHHhhhccccccccEEEeccccchhhhhhhcccch
Confidence            57999999999999999999999999999999986     3333333222212222445668899999999999999999


Q ss_pred             EEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCC--CCCcccCCCCCChhhh----
Q 020104           85 GVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDK--DVDMMDETFWSDVDYI----  158 (331)
Q Consensus        85 ~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~--~~~~~~E~~~~~~~~~----  158 (331)
                      +|+|+|+..... .++. ..+..|+.++.+++++|++.+.+++|||+||+.++++..+  .....+|+.+......    
T Consensus        86 ~v~~~a~~~~~~-~~~~-~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  163 (342)
T d1y1pa1          86 GVAHIASVVSFS-NKYD-EVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKT  163 (342)
T ss_dssp             EEEECCCCCSCC-SCHH-HHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHHH
T ss_pred             hhhhhccccccc-cccc-ccccchhhhHHHHHHhhhcccccccccccccceeeccCCCCCCCcccccccccccccccccc
Confidence            999999987644 3444 7889999999999999999744899999999876553332  2234455544322111    


Q ss_pred             ---hhcCCCCchhHhhHHHHHHHHHHHHHHc--CCcEEEeccCceeCCCCCCCCCcc-HHHHH-HHHhCCCcccc-cCCC
Q 020104          159 ---RKLDSWGKSYAISKTLTERAALEFAEEH--GLDLVTLIPSMVVGPFICPKFAGS-VRSSL-ALILGNREEYG-FLLN  230 (331)
Q Consensus       159 ---~~~~~~~~~Y~~~K~~~e~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~-~~~~~-~~~~~~~~~~~-~~~~  230 (331)
                         ..+..|.++|+.+|..+|++++.+++++  +++++++||+.+|||...+..... ...+. ....+...... ....
T Consensus       164 ~~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~  243 (342)
T d1y1pa1         164 LPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPP  243 (342)
T ss_dssp             SCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHHHTCCS
T ss_pred             ccccCCCCCcCcccchhHhHHHHHHHhhhhcccccccceecccceeCCCCCccccccchHHHHHHHHcCCcCcccCCccc
Confidence               1223456789999999999999998876  467889999999999765543322 33333 33444443332 2333


Q ss_pred             ccceeHHHHHHHHHHhhcCCCCCceEE-EeccccCHHHHHHHHHhhCCCCCCCCccCCccc---cCCcCcccCcHHHHHc
Q 020104          231 TSMVHVDDVARAHIFLLEYPDAKGRYI-CSSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEI---EGYRAPGSSSKKLLDA  306 (331)
Q Consensus       231 ~~~i~v~D~a~~~~~~~~~~~~~~~~~-~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~k~~~l  306 (331)
                      ++|+|++|+|++++.+++++..++.|+ ++++.+|+.|+++.+.+.+|...++.  .++..   ........+.++++.|
T Consensus       244 ~~~v~v~Dva~~~i~~l~~~~~~g~~~~~~~~~~t~~eia~~i~k~~p~~~~~~--~~~~~~~~~~~~~~~~s~~~~k~l  321 (342)
T d1y1pa1         244 QYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPA--DFPDQGQDLSKFDTAPSLEILKSL  321 (342)
T ss_dssp             EEEEEHHHHHHHHHHHHHCTTCCSCEEEECCEEECHHHHHHHHHHHCTTSCCCC--CCCCCCCCCCEECCHHHHHHHHHT
T ss_pred             eeeeeHHHHHHHHHHhhcCccccceEEEEcCCceEHHHHHHHHHHHcCCCcCCc--cCCccCcccccccchHHHHHHHHc
Confidence            789999999999999998877776554 67789999999999999998666655  33222   1111222233444889


Q ss_pred             CCccccChhhhHHHHHHHH
Q 020104          307 GFRYNYGIDEMFDEAIQCC  325 (331)
Q Consensus       307 g~~~~~~~~e~i~~~~~~~  325 (331)
                      ||.+.++++|+|+++++.+
T Consensus       322 g~~~~~~lee~i~d~I~s~  340 (342)
T d1y1pa1         322 GRPGWRSIEESIKDLVGSE  340 (342)
T ss_dssp             TCCSCCCHHHHHHHHHCCS
T ss_pred             CCCCCcCHHHHHHHHHHhC
Confidence            9999889999999998753

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=100.00  E-value=2.7e-40  Score=288.92  Aligned_cols=310  Identities=15%  Similarity=0.153  Sum_probs=220.7

Q ss_pred             eEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--Ccc
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--GCT   84 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d   84 (331)
                      ||||||||||||++|+++|+++||+|+++++-..   ......+..+..    .++++++.+|+.|.+++.++++  ++|
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~---~~~~~~~~~~~~----~~~~~~i~~Di~~~~~l~~~~~~~~~d   74 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSR---KGATDNLHWLSS----LGNFEFVHGDIRNKNDVTRLITKYMPD   74 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS---TTHHHHHHHHHT----TCCCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCc---ccchhHHHHhhc----cCCcEEEEcccCCHHHHHHHHHhcCCc
Confidence            7999999999999999999999999999875321   012222223222    2678999999999999999987  479


Q ss_pred             EEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCC-------Ch
Q 020104           85 GVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWS-------DV  155 (331)
Q Consensus        85 ~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~-------~~  155 (331)
                      +|||+|+....  ...++. ..+++|+.||.+|+++|++.+ ++++|++||..+++.... ..+..+.+..       ..
T Consensus        75 ~Vih~aa~~~~~~~~~~~~-~~~~~Nv~gt~nll~~~~~~~-~~~~i~~sS~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  151 (338)
T d1orra_          75 SCFHLAGQVAMTTSIDNPC-MDFEINVGGTLNLLEAVRQYN-SNCNIIYSSTNKVYGDLE-QYKYNETETRYTCVDKPNG  151 (338)
T ss_dssp             EEEECCCCCCHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHC-TTCEEEEEEEGGGGTTCT-TSCEEECSSCEEETTCTTC
T ss_pred             eEEeecccccccccccChH-HHHHHHHHHHHHHHHhhhccc-cccccccccccccccccc-ccccccccccccccccccC
Confidence            99999997652  223455 889999999999999999998 777777777766653322 2222211110       00


Q ss_pred             hhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCcc-HHHHH----HHHh--CCC-ccccc
Q 020104          156 DYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGS-VRSSL----ALIL--GNR-EEYGF  227 (331)
Q Consensus       156 ~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~-~~~~~----~~~~--~~~-~~~~~  227 (331)
                      ........|.+.|+.+|...|.++..+...+++...++|++.+||+...+..... +..+.    ....  +.+ ..++.
T Consensus       152 ~~~~~~~~~~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  231 (338)
T d1orra_         152 YDESTQLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGN  231 (338)
T ss_dssp             BCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEESS
T ss_pred             cccCCccccccccccccchhhhhhhhhhhccCcccccccccceeeccccccccccccchhhHHHHHHHhccCCceEEeCC
Confidence            0011223567899999999999999999999999999999999987665443322 22222    2222  223 23444


Q ss_pred             CCC-ccceeHHHHHHHHHHhhcCCC--CCceEEEe---ccccCHHHHHHHHHhhCCCCCCCCccCCccccCCcCcccCcH
Q 020104          228 LLN-TSMVHVDDVARAHIFLLEYPD--AKGRYICS---SHTLTIQEMAEFLSAKYPEYPIPTVDSLAEIEGYRAPGSSSK  301 (331)
Q Consensus       228 ~~~-~~~i~v~D~a~~~~~~~~~~~--~~~~~~~~---~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (331)
                      +.. ++|+|++|++++++.++++..  .+++|++.   +..+++.|+++.+.+..+.. .+......+.........|++
T Consensus       232 g~~~r~~~~v~D~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~s~~e~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~d~~  310 (338)
T d1orra_         232 GKQVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNID-MRFTNLPVRESDQRVFVADIK  310 (338)
T ss_dssp             SCCEEECEEHHHHHHHHHHHHHTHHHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCC-CCEEEECCCSSCCSEECBCCH
T ss_pred             CceeEeeecccchhhHHHHHHhccccccCccccccccccccccHHHHHHHHHHHHCCC-ceeEeCCCCCCCcCeeeECHH
Confidence            444 799999999999999997643  45678762   35689999999999987622 111001111123344567999


Q ss_pred             HH-HHcCCccccChhhhHHHHHHHHHH
Q 020104          302 KL-LDAGFRYNYGIDEMFDEAIQCCKE  327 (331)
Q Consensus       302 k~-~~lg~~~~~~~~e~i~~~~~~~~~  327 (331)
                      |+ +.|||+|+++++|+|+++++|+++
T Consensus       311 k~~~~Lg~~p~~sl~e~i~~ti~W~k~  337 (338)
T d1orra_         311 KITNAIDWSPKVSAKDGVQKMYDWTSS  337 (338)
T ss_dssp             HHHHHHCCCCCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCcCCCHHHHHHHHHHHHHc
Confidence            99 889999999999999999999986

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=100.00  E-value=2.5e-40  Score=291.34  Aligned_cols=303  Identities=17%  Similarity=0.125  Sum_probs=220.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      ++|||||||||||||++|++.|+++|++|++++|+.+     ....+...   ....++++++.+|+.|++.+.+++.  
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~-----~~~~~~~~---~~~~~~i~~~~~Dl~d~~~l~~~~~~~   78 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP-----TVPSLFET---ARVADGMQSEIGDIRDQNKLLESIREF   78 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS-----SSSCHHHH---TTTTTTSEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC-----ccHHHHhh---hhcccCCeEEEeeccChHhhhhhhhhc
Confidence            4689999999999999999999999999999999873     22221111   1112579999999999999998886  


Q ss_pred             CccEEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhh
Q 020104           82 GCTGVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIR  159 (331)
Q Consensus        82 ~~d~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~  159 (331)
                      .+|+|+|+|+....  ...++. ..+.+|+.++.++++++++.+....+++.|| .++++......+.+|+++       
T Consensus        79 ~~~~v~~~aa~~~~~~~~~~~~-~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~-------  149 (356)
T d1rkxa_          79 QPEIVFHMAAQPLVRLSYSEPV-ETYSTNVMGTVYLLEAIRHVGGVKAVVNITS-DKCYDNKEWIWGYRENEA-------  149 (356)
T ss_dssp             CCSEEEECCSCCCHHHHHHCHH-HHHHHHTHHHHHHHHHHHHHCCCCEEEEECC-GGGBCCCCSSSCBCTTSC-------
T ss_pred             hhhhhhhhhccccccccccCCc-cccccccccchhhhhhhhccccccccccccc-cccccccccccccccccc-------
Confidence            68999999987552  223455 8899999999999999999873445555554 445445555566666664       


Q ss_pred             hcCCCCchhHhhHHHHHHHHHHHHHH---------cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC-cccccCC
Q 020104          160 KLDSWGKSYAISKTLTERAALEFAEE---------HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR-EEYGFLL  229 (331)
Q Consensus       160 ~~~~~~~~Y~~~K~~~e~~~~~~~~~---------~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  229 (331)
                        ..|.++|+.+|...|..+..+..+         +++.++++||+++|||++... ...+..+.....+.. ...+.+.
T Consensus       150 --~~p~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~-~~~i~~~~~~~~~~~~~~~~~~~  226 (356)
T d1rkxa_         150 --MGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWAL-DRIVPDILRAFEQSQPVIIRNPH  226 (356)
T ss_dssp             --BCCSSHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCS-SCHHHHHHHHHHTTCCEECSCTT
T ss_pred             --cCCCCccccccccchhhhhHHhhhcccchhccccCceEEeccCCCeeCCCcchh-hHHHHHHHHHHhCCCceEEeecc
Confidence              356789999999999999887653         467899999999999986432 233444444444444 4444444


Q ss_pred             C-ccceeHHHHHHHHHHhhcCCCCC-----ceEE--E-eccccCHHHHHHHHHhhCCCCC-CCCccCCccccCCcCcccC
Q 020104          230 N-TSMVHVDDVARAHIFLLEYPDAK-----GRYI--C-SSHTLTIQEMAEFLSAKYPEYP-IPTVDSLAEIEGYRAPGSS  299 (331)
Q Consensus       230 ~-~~~i~v~D~a~~~~~~~~~~~~~-----~~~~--~-~~~~~s~~e~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~  299 (331)
                      . ++++|++|++++++.++.+....     ...+  . .+..+++.++++.+.+..+... .... ............+|
T Consensus       227 ~~~~~~~v~D~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~d  305 (356)
T d1rkxa_         227 AIRPWQHVLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLD-GNAHPHEAHYLKLD  305 (356)
T ss_dssp             CEECCEETHHHHHHHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC--------CCCCCCBC
T ss_pred             ccccccccccccchhhhhhhhhcccccccccccccccccccccccchhhhhhHHHhCCCccEEEc-CCCCCCCcCeeeEc
Confidence            4 79999999999999988764322     2222  2 2456899999999999887221 1110 11111234556789


Q ss_pred             cHHH-HHcCCccccChhhhHHHHHHHHHH
Q 020104          300 SKKL-LDAGFRYNYGIDEMFDEAIQCCKE  327 (331)
Q Consensus       300 ~~k~-~~lg~~~~~~~~e~i~~~~~~~~~  327 (331)
                      ++|+ +.|||+|+++++++|+++++||++
T Consensus       306 ~skak~~LGw~P~~~l~egi~~ti~wyk~  334 (356)
T d1rkxa_         306 CSKAKMQLGWHPRWNLNTTLEYIVGWHKN  334 (356)
T ss_dssp             CHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCcCCCHHHHHHHHHHHHHH
Confidence            9999 889999999999999999999976

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=100.00  E-value=1.9e-37  Score=263.89  Aligned_cols=268  Identities=12%  Similarity=0.044  Sum_probs=205.4

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--Cc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--GC   83 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~   83 (331)
                      |||||||||||||++|+++|.++||+|++++|+.                            +|+.|.+++.++++  ++
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~----------------------------~D~~d~~~~~~~l~~~~~   53 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD----------------------------LDITNVLAVNKFFNEKKP   53 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT----------------------------CCTTCHHHHHHHHHHHCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh----------------------------ccCCCHHHHHHHHHHcCC
Confidence            5899999999999999999999999999998876                            48889999999886  68


Q ss_pred             cEEEEecccCCC--CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhc
Q 020104           84 TGVLHVATPVDF--EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKL  161 (331)
Q Consensus        84 d~Vih~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~  161 (331)
                      |+|||+|+....  ....+. .....|+..+..+.+.+....  .+++++||..+|+  .....+.+|.++         
T Consensus        54 d~vih~a~~~~~~~~~~~~~-~~~~~n~~~~~~~~~~~~~~~--~~~~~~ss~~v~~--~~~~~~~~e~~~---------  119 (281)
T d1vl0a_          54 NVVINCAAHTAVDKCEEQYD-LAYKINAIGPKNLAAAAYSVG--AEIVQISTDYVFD--GEAKEPITEFDE---------  119 (281)
T ss_dssp             SEEEECCCCCCHHHHHHCHH-HHHHHHTHHHHHHHHHHHHHT--CEEEEEEEGGGSC--SCCSSCBCTTSC---------
T ss_pred             CEEEeeccccccccccccch-hhccccccccccccccccccc--ccccccccceeee--cccccccccccc---------
Confidence            999999987652  122333 677889999999999998876  6889999988884  555667788774         


Q ss_pred             CCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHH-hCCCcccccCCCccceeHHHHH
Q 020104          162 DSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALI-LGNREEYGFLLNTSMVHVDDVA  240 (331)
Q Consensus       162 ~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~v~D~a  240 (331)
                      ..|.+.|+.+|..+|+.++.    .+.+++++||+++||++.+     ....+.... .+..........++++|++|++
T Consensus       120 ~~~~~~~~~~k~~~e~~~~~----~~~~~~i~R~~~vyG~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~  190 (281)
T d1vl0a_         120 VNPQSAYGKTKLEGENFVKA----LNPKYYIVRTAWLYGDGNN-----FVKTMINLGKTHDELKVVHDQVGTPTSTVDLA  190 (281)
T ss_dssp             CCCCSHHHHHHHHHHHHHHH----HCSSEEEEEECSEESSSSC-----HHHHHHHHHHHCSEEEEESSCEECCEEHHHHH
T ss_pred             ccchhhhhhhhhHHHHHHHH----hCCCccccceeEEeCCCcc-----cccchhhhhccCCceeecCCceeccchhhhhh
Confidence            35677899999999988865    5789999999999999743     233333333 3333333323337999999999


Q ss_pred             HHHHHhhcCCCCCceEE-EeccccCHHHHHHHHHhhCCC-CCCCC--ccCCccc-cCCcCcccCcHHH-HHcCCccccCh
Q 020104          241 RAHIFLLEYPDAKGRYI-CSSHTLTIQEMAEFLSAKYPE-YPIPT--VDSLAEI-EGYRAPGSSSKKL-LDAGFRYNYGI  314 (331)
Q Consensus       241 ~~~~~~~~~~~~~~~~~-~~~~~~s~~e~~~~i~~~~~~-~~~~~--~~~~~~~-~~~~~~~~~~~k~-~~lg~~~~~~~  314 (331)
                      +++..++++... |.|| .+++.+|+.|+++.+.+.+|. ..+.+  ...++.. ..+....+|++|+ +.+||+|+ +|
T Consensus       191 ~~~~~~~~~~~~-g~~~~~~~~~~s~~e~~~~i~~~~g~~~~i~~i~~~~~~~~a~rp~~~~ld~~k~~~~~g~~~~-~~  268 (281)
T d1vl0a_         191 RVVLKVIDEKNY-GTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGDITR-EW  268 (281)
T ss_dssp             HHHHHHHHHTCC-EEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHTTCCCCC-BH
T ss_pred             hhhhhhhhhccc-CceeEeCCCccchHHHHHHHHHHhCCCceEEeccHHHcCCcCCCccccccCHHHHHHHhCCCCC-CH
Confidence            999999988654 5777 567889999999999998872 21111  0111111 1123345799999 88999999 99


Q ss_pred             hhhHHHHHHHHH
Q 020104          315 DEMFDEAIQCCK  326 (331)
Q Consensus       315 ~e~i~~~~~~~~  326 (331)
                      +|++++++++++
T Consensus       269 ~~~l~~~l~~l~  280 (281)
T d1vl0a_         269 KESLKEYIDLLQ  280 (281)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999999985

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.6e-35  Score=254.81  Aligned_cols=288  Identities=18%  Similarity=0.161  Sum_probs=189.8

Q ss_pred             EEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHH-Hh-----
Q 020104            8 VCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDA-AI-----   80 (331)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~-~~-----   80 (331)
                      |||||||||||++|+++|+++|+ +|+++++-.      ...+...+.+.         ...|..+...+.. ..     
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~------~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~   66 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLK------DGTKFVNLVDL---------NIADYMDKEDFLIQIMAGEEF   66 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCS------SGGGGHHHHTS---------CCSEEEEHHHHHHHHHTTCCC
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEECCC------Ccchhhccccc---------chhhhccchHHHHHHhhhhcc
Confidence            89999999999999999999995 788876432      11111111111         0112222222222 22     


Q ss_pred             cCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhh
Q 020104           81 AGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRK  160 (331)
Q Consensus        81 ~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~  160 (331)
                      ..+++|+|+|+.......+.. ...+.|+.++.+++++++..+ + ++|+.||..+++.  .......|+.         
T Consensus        67 ~~~~~i~~~aa~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~-i-~~v~~ss~~~~~~--~~~~~~~~~~---------  132 (307)
T d1eq2a_          67 GDVEAIFHEGACSSTTEWDGK-YMMDNNYQYSKELLHYCLERE-I-PFLYASSAATYGG--RTSDFIESRE---------  132 (307)
T ss_dssp             SSCCEEEECCSCCCTTCCCHH-HHHHHTHHHHHHHHHHHHHHT-C-CEEEEEEGGGGTT--CCSCBCSSGG---------
T ss_pred             cchhhhhhhcccccccccccc-ccccccccccccccccccccc-c-ccccccccccccc--cccccccccc---------
Confidence            358999999987665555554 788999999999999999998 6 5777777777742  2233333333         


Q ss_pred             cCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCC--CccHHHHHHHHh-CCCccc--ccCCC-ccce
Q 020104          161 LDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKF--AGSVRSSLALIL-GNREEY--GFLLN-TSMV  234 (331)
Q Consensus       161 ~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~--~~~~~~~~~~~~-~~~~~~--~~~~~-~~~i  234 (331)
                      ...|.+.|+.+|..+|.+++.+..+++++++++||+++|||+.....  ......+...+. ++....  +.+.. ++|+
T Consensus       133 ~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~  212 (307)
T d1eq2a_         133 YEKPLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFV  212 (307)
T ss_dssp             GCCCSSHHHHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------CBCEE
T ss_pred             ccccccccccccchhhhhccccccccccccccccceeEeeccccccccccccccccccccccccceeeecCccceeeeee
Confidence            24567899999999999999999999999999999999999865432  222333333333 333332  22322 7999


Q ss_pred             eHHHHHHHHHHhhcCCCCCceEEE-eccccCHHHHHHHHHhhCCCCCCCCccCCccc--cCCcCcccCcHHH-HHcCCcc
Q 020104          235 HVDDVARAHIFLLEYPDAKGRYIC-SSHTLTIQEMAEFLSAKYPEYPIPTVDSLAEI--EGYRAPGSSSKKL-LDAGFRY  310 (331)
Q Consensus       235 ~v~D~a~~~~~~~~~~~~~~~~~~-~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~k~-~~lg~~~  310 (331)
                      |++|+++++..++.++. .+.||+ +++.+|++|+++.+.+..+...+.........  ........|++|+ +.+||+|
T Consensus       213 ~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~si~~i~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~~k~~~~~~~~p  291 (307)
T d1eq2a_         213 YVGDVADVNLWFLENGV-SGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKP  291 (307)
T ss_dssp             EHHHHHHHHHHHHHHCC-CEEEEESCSCCBCHHHHHHHC---------------------CCCSCCBCCHHHHHTTCCCC
T ss_pred             ecccHHHHHHHHhhhcc-ccccccccccchhHHHHHHHHHHhcCCCCeeEeeCCccCCCCCceeeecCHHHHHHHHCCCC
Confidence            99999999999998764 567775 67899999999999887663322211011111  2233445699999 8889999


Q ss_pred             ccChhhhHHHHHHHH
Q 020104          311 NYGIDEMFDEAIQCC  325 (331)
Q Consensus       311 ~~~~~e~i~~~~~~~  325 (331)
                      .++++|+|+++++|+
T Consensus       292 ~~sl~egi~~~i~w~  306 (307)
T d1eq2a_         292 FKTVAEGVTEYMAWL  306 (307)
T ss_dssp             CCCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHhC
Confidence            999999999999985

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=100.00  E-value=1.2e-33  Score=242.14  Aligned_cols=275  Identities=15%  Similarity=0.055  Sum_probs=196.3

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--Cc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--GC   83 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~   83 (331)
                      |||||||||||||++|+++|.+.|+.|. +.+...                     .   +.+|+.|.+.+.++++  ++
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g~~v~-~~~~~~---------------------~---~~~Dl~~~~~~~~~i~~~~~   55 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVGNLIA-LDVHSK---------------------E---FCGDFSNPKGVAETVRKLRP   55 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSEEEE-ECTTCS---------------------S---SCCCTTCHHHHHHHHHHHCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEE-EECCCc---------------------c---ccCcCCCHHHHHHHHHHcCC
Confidence            5899999999999999999999886554 444430                     0   3479999999999886  57


Q ss_pred             cEEEEecccCC--CCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhc
Q 020104           84 TGVLHVATPVD--FEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKL  161 (331)
Q Consensus        84 d~Vih~a~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~  161 (331)
                      |+||||||...  ....++. ..++.|+.++.+++++|++.+  .+++++||..+|+  .....+.+|+++         
T Consensus        56 D~Vih~Aa~~~~~~~~~~~~-~~~~~n~~~~~~l~~~~~~~~--~~~~~~ss~~~~~--~~~~~~~~E~~~---------  121 (298)
T d1n2sa_          56 DVIVNAAAHTAVDKAESEPE-LAQLLNATSVEAIAKAANETG--AWVVHYSTDYVFP--GTGDIPWQETDA---------  121 (298)
T ss_dssp             SEEEECCCCCCHHHHTTCHH-HHHHHHTHHHHHHHHHHTTTT--CEEEEEEEGGGSC--CCTTCCBCTTSC---------
T ss_pred             CEEEEecccccccccccCcc-ccccccccccccchhhhhccc--ccccccccccccc--CCCCCCCccccc---------
Confidence            99999998655  2234454 789999999999999999987  5899999998885  455678888875         


Q ss_pred             CCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC-cccccCCCccceeHHHHH
Q 020104          162 DSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR-EEYGFLLNTSMVHVDDVA  240 (331)
Q Consensus       162 ~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~v~D~a  240 (331)
                      ..|.+.|+.+|..+|..+..+    .....++|++..++....    .....+...+.... .........+++|++|++
T Consensus       122 ~~p~~~y~~~k~~~e~~~~~~----~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  193 (298)
T d1n2sa_         122 TSPLNVYGKTKLAGEKALQDN----CPKHLIFRTSWVYAGKGN----NFAKTMLRLAKERQTLSVINDQYGAPTGAELLA  193 (298)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHH----CSSEEEEEECSEECSSSC----CHHHHHHHHHHHCSEEEEECSCEECCEEHHHHH
T ss_pred             cCCCchHhhhhhhhhhhHHhh----hcccccccccceeeccCC----ccchhhhhhhcccceeecccceeecccccchHH
Confidence            356789999999999988764    345666776666644221    12222333333333 333222236899999999


Q ss_pred             HHHHHhhc----CCCCCceEEEe-ccccCHHHHHHHHHhhCCC--CCCCCc-------cCCccc-cCCcCcccCcHHH-H
Q 020104          241 RAHIFLLE----YPDAKGRYICS-SHTLTIQEMAEFLSAKYPE--YPIPTV-------DSLAEI-EGYRAPGSSSKKL-L  304 (331)
Q Consensus       241 ~~~~~~~~----~~~~~~~~~~~-~~~~s~~e~~~~i~~~~~~--~~~~~~-------~~~~~~-~~~~~~~~~~~k~-~  304 (331)
                      +++..++.    .+...++||++ ++.+++.|+++.+.+..+.  ...+..       ..+... ..+....+|++|+ +
T Consensus       194 ~~~~~~i~~~~~~~~~~~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~a~RP~~~~ld~~K~~~  273 (298)
T d1n2sa_         194 DCTAHAIRVALNKPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQR  273 (298)
T ss_dssp             HHHHHHHHHHHHCGGGCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHH
T ss_pred             HHHHHHHhhhhccccccccccccCCCceecHHHHHHHHhhhhccCccccccceeeeehhhcCccCCCccccccCHHHHHH
Confidence            99988775    34457889965 5789999999999774431  111110       001000 1122346899999 7


Q ss_pred             HcCCccccChhhhHHHHHHHHHHc
Q 020104          305 DAGFRYNYGIDEMFDEAIQCCKEK  328 (331)
Q Consensus       305 ~lg~~~~~~~~e~i~~~~~~~~~~  328 (331)
                      .+||+|+ +|+++|+++++.+.+.
T Consensus       274 ~~~~~~~-~~~~gl~~~i~~~~~~  296 (298)
T d1n2sa_         274 NFDLILP-QWELGVKRMLTEMFTT  296 (298)
T ss_dssp             HHTCCCC-BHHHHHHHHHHHHHSC
T ss_pred             HHCCCCC-cHHHHHHHHHHHHHhh
Confidence            8999999 9999999999988764

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.6e-32  Score=221.93  Aligned_cols=208  Identities=17%  Similarity=0.095  Sum_probs=157.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGY--SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      ++|+|||||||||||++++++|+++|+  +|++++|++.     .... ..       ...++...+|+.+.+++.+++.
T Consensus        13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~-----~~~~-~~-------~~~i~~~~~D~~~~~~~~~~~~   79 (232)
T d2bkaa1          13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKL-----TFDE-EA-------YKNVNQEVVDFEKLDDYASAFQ   79 (232)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCC-----CCCS-GG-------GGGCEEEECCGGGGGGGGGGGS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChh-----hhcc-cc-------cceeeeeeeccccccccccccc
Confidence            357899999999999999999999984  8999999872     1111 11       1467888899999999999999


Q ss_pred             CccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhc
Q 020104           82 GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKL  161 (331)
Q Consensus        82 ~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~  161 (331)
                      ++|+|||+++.....  .....+.++|+.++.+++++|++.+ +++|||+||..++.                       
T Consensus        80 ~~d~vi~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~-v~~fi~~Ss~~~~~-----------------------  133 (232)
T d2bkaa1          80 GHDVGFCCLGTTRGK--AGAEGFVRVDRDYVLKSAELAKAGG-CKHFNLLSSKGADK-----------------------  133 (232)
T ss_dssp             SCSEEEECCCCCHHH--HHHHHHHHHHTHHHHHHHHHHHHTT-CCEEEEECCTTCCT-----------------------
T ss_pred             ccccccccccccccc--cchhhhhhhcccccceeeecccccC-ccccccCCcccccc-----------------------
Confidence            999999999864321  1223778999999999999999999 99999999987652                       


Q ss_pred             CCCCchhHhhHHHHHHHHHHHHHHcCC-cEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHHHHH
Q 020104          162 DSWGKSYAISKTLTERAALEFAEEHGL-DLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVA  240 (331)
Q Consensus       162 ~~~~~~Y~~~K~~~e~~~~~~~~~~~~-~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a  240 (331)
                       .+.+.|+.+|..+|+.+.+    .++ +++||||+.+||++....   .............  .........||++|+|
T Consensus       134 -~~~~~Y~~~K~~~E~~l~~----~~~~~~~IlRP~~i~G~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~I~~~dvA  203 (232)
T d2bkaa1         134 -SSNFLYLQVKGEVEAKVEE----LKFDRYSVFRPGVLLCDRQESR---PGEWLVRKFFGSL--PDSWASGHSVPVVTVV  203 (232)
T ss_dssp             -TCSSHHHHHHHHHHHHHHT----TCCSEEEEEECCEEECTTGGGS---HHHHHHHHHHCSC--CTTGGGGTEEEHHHHH
T ss_pred             -CccchhHHHHHHhhhcccc----ccccceEEecCceeecCCCcCc---HHHHHHHHHhhcc--CCcccCCCeEEHHHHH
Confidence             2245799999999998866    456 489999999999975532   1112222221111  1111114679999999


Q ss_pred             HHHHHhhcCCCCCceEEEec
Q 020104          241 RAHIFLLEYPDAKGRYICSS  260 (331)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~  260 (331)
                      ++++.++.++..++.+++++
T Consensus       204 ~a~i~~~~~~~~~~~~i~~~  223 (232)
T d2bkaa1         204 RAMLNNVVRPRDKQMELLEN  223 (232)
T ss_dssp             HHHHHHHTSCCCSSEEEEEH
T ss_pred             HHHHHHHhcCccCCeEEEcH
Confidence            99999999888888887764

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.6e-30  Score=205.88  Aligned_cols=199  Identities=16%  Similarity=0.120  Sum_probs=150.9

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      ||||+||||||+||++++++|+++||+|++++|++.     +   +...     ...+++++.+|+.|.+++.+++.++|
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~-----~---~~~~-----~~~~~~~~~gD~~d~~~l~~al~~~d   69 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS-----R---LPSE-----GPRPAHVVVGDVLQAADVDKTVAGQD   69 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG-----G---SCSS-----SCCCSEEEESCTTSHHHHHHHHTTCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChh-----h---cccc-----cccccccccccccchhhHHHHhcCCC
Confidence            679999999999999999999999999999999882     2   1111     12578999999999999999999999


Q ss_pred             EEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCCC
Q 020104           85 GVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSW  164 (331)
Q Consensus        85 ~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~  164 (331)
                      +|||+++.....      .....+..+++++++++++++ ++|||++||..+++.  ....                ++.
T Consensus        70 ~vi~~~g~~~~~------~~~~~~~~~~~~l~~aa~~~~-v~r~i~~ss~~~~~~--~~~~----------------~~~  124 (205)
T d1hdoa_          70 AVIVLLGTRNDL------SPTTVMSEGARNIVAAMKAHG-VDKVVACTSAFLLWD--PTKV----------------PPR  124 (205)
T ss_dssp             EEEECCCCTTCC------SCCCHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTSC--TTCS----------------CGG
T ss_pred             EEEEEeccCCch------hhhhhhHHHHHHHHHHHHhcC-CCeEEEEeeeeccCC--Cccc----------------ccc
Confidence            999999864322      223466789999999999999 999999999887642  1110                112


Q ss_pred             CchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccC-CCccceeHHHHHHHH
Q 020104          165 GKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFL-LNTSMVHVDDVARAH  243 (331)
Q Consensus       165 ~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~v~D~a~~~  243 (331)
                      ...|...|..+|+.++.    .+++++++||+.+++....+.               ......+ ....+++.+|+|+++
T Consensus       125 ~~~~~~~~~~~e~~l~~----~~~~~tiirp~~~~~~~~~~~---------------~~~~~~~~~~~~~i~~~DvA~~~  185 (205)
T d1hdoa_         125 LQAVTDDHIRMHKVLRE----SGLKYVAVMPPHIGDQPLTGA---------------YTVTLDGRGPSRVISKHDLGHFM  185 (205)
T ss_dssp             GHHHHHHHHHHHHHHHH----TCSEEEEECCSEEECCCCCSC---------------CEEESSSCSSCSEEEHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHh----cCCceEEEecceecCCCCccc---------------EEEeeCCCCCCCcCCHHHHHHHH
Confidence            34688899999987754    789999999999987543321               1111111 125899999999999


Q ss_pred             HHhhcCCCC-CceEEEec
Q 020104          244 IFLLEYPDA-KGRYICSS  260 (331)
Q Consensus       244 ~~~~~~~~~-~~~~~~~~  260 (331)
                      +.+++++.. +..+.++.
T Consensus       186 ~~~l~~~~~~g~~~~~s~  203 (205)
T d1hdoa_         186 LRCLTTDEYDGHSTYPSH  203 (205)
T ss_dssp             HHTTSCSTTTTCEEEEEC
T ss_pred             HHHhCCCCCCCEEEecCC
Confidence            999998775 44454443

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.96  E-value=6.1e-29  Score=202.08  Aligned_cols=194  Identities=20%  Similarity=0.143  Sum_probs=136.9

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh-c
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY--SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI-A   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-~   81 (331)
                      .|||||||||||||++++++|+++|+  +|+++.|++.     .            ..+.++....|   ..++...+ .
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~-----~------------~~~~~~~~~~d---~~~~~~~~~~   61 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKAL-----A------------EHPRLDNPVGP---LAELLPQLDG   61 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCC-----C------------CCTTEECCBSC---HHHHGGGCCS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCch-----h------------hcccccccccc---hhhhhhcccc
Confidence            47999999999999999999999997  6776676651     1            01233333333   22232333 3


Q ss_pred             CccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhc
Q 020104           82 GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKL  161 (331)
Q Consensus        82 ~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~  161 (331)
                      .+|+|||+++.......+.. .+.+.|+.++.+++++|++.+ +++|+++||.+++.                       
T Consensus        62 ~~d~vi~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~-v~~~i~~Ss~~~~~-----------------------  116 (212)
T d2a35a1          62 SIDTAFCCLGTTIKEAGSEE-AFRAVDFDLPLAVGKRALEMG-ARHYLVVSALGADA-----------------------  116 (212)
T ss_dssp             CCSEEEECCCCCHHHHSSHH-HHHHHHTHHHHHHHHHHHHTT-CCEEEEECCTTCCT-----------------------
T ss_pred             chheeeeeeeeecccccccc-ccccchhhhhhhccccccccc-cccccccccccccc-----------------------
Confidence            68999999986543333333 889999999999999999998 99999999987762                       


Q ss_pred             CCCCchhHhhHHHHHHHHHHHHHHcCC-cEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHHHHH
Q 020104          162 DSWGKSYAISKTLTERAALEFAEEHGL-DLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVA  240 (331)
Q Consensus       162 ~~~~~~Y~~~K~~~e~~~~~~~~~~~~-~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a  240 (331)
                       .+.+.|+.+|..+|+.++.    .++ +++|+||+.+||+.........+        .........+.+++||++|+|
T Consensus       117 -~~~~~y~~~K~~~E~~l~~----~~~~~~~I~Rp~~v~G~~~~~~~~~~~--------~~~~~~~~~~~~~~i~v~DvA  183 (212)
T d2a35a1         117 -KSSIFYNRVKGELEQALQE----QGWPQLTIARPSLLFGPREEFRLAEIL--------AAPIARILPGKYHGIEACDLA  183 (212)
T ss_dssp             -TCSSHHHHHHHHHHHHHTT----SCCSEEEEEECCSEESTTSCEEGGGGT--------TCCCC----CHHHHHHHHHHH
T ss_pred             -ccccchhHHHHHHhhhccc----cccccceeeCCcceeCCcccccHHHHH--------HHHHhhccCCCCcEEEHHHHH
Confidence             2245799999999998864    455 59999999999997654221111        111111111225679999999


Q ss_pred             HHHHHhhcCCCCCceE
Q 020104          241 RAHIFLLEYPDAKGRY  256 (331)
Q Consensus       241 ~~~~~~~~~~~~~~~~  256 (331)
                      ++++.+++++..+..|
T Consensus       184 ~ai~~~~~~~~~g~~~  199 (212)
T d2a35a1         184 RALWRLALEEGKGVRF  199 (212)
T ss_dssp             HHHHHHHTCCCSEEEE
T ss_pred             HHHHHHHcCCCCCCEE
Confidence            9999999887654444

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=99.95  E-value=1.2e-28  Score=211.94  Aligned_cols=234  Identities=18%  Similarity=0.159  Sum_probs=161.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      +++||||||||||||++|+++|+++||+|++++|+...........+..+.     ..+++++.+|+.|.+.+.+.+.++
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-----~~~v~~v~~d~~d~~~~~~~~~~~   76 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFK-----QLGAKLIEASLDDHQRLVDALKQV   76 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHH-----TTTCEEECCCSSCHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhc-----cCCcEEEEeecccchhhhhhccCc
Confidence            457899999999999999999999999999999987311111111111111     157899999999999999999999


Q ss_pred             cEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCC
Q 020104           84 TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDS  163 (331)
Q Consensus        84 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~  163 (331)
                      ++++|+++....          ..|..++.+++++|++.+ ..++++.||.+++.  ..      +..         ...
T Consensus        77 ~~~~~~~~~~~~----------~~~~~~~~~~l~~a~~~~-~~~~v~~Ss~g~~~--~~------~~~---------~~~  128 (312)
T d1qyda_          77 DVVISALAGGVL----------SHHILEQLKLVEAIKEAG-NIKRFLPSEFGMDP--DI------MEH---------ALQ  128 (312)
T ss_dssp             SEEEECCCCSSS----------STTTTTHHHHHHHHHHSC-CCSEEECSCCSSCT--TS------CCC---------CCS
T ss_pred             chhhhhhhhccc----------ccchhhhhHHHHHHHHhc-CCcEEEEeeccccC--CC------ccc---------ccc
Confidence            999999875322          233445678888899887 67888888865442  11      111         012


Q ss_pred             CCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC-cccccCCC-ccceeHHHHHH
Q 020104          164 WGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR-EEYGFLLN-TSMVHVDDVAR  241 (331)
Q Consensus       164 ~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~i~v~D~a~  241 (331)
                      |...|...|..++.    +....+++++++||+.+||+............   ...+.. ..++.+.. ++|+|++|+|+
T Consensus       129 ~~~~~~~~~~~~~~----~~~~~~~~~~i~r~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~i~v~Dva~  201 (312)
T d1qyda_         129 PGSITFIDKRKVRR----AIEAASIPYTYVSSNMFAGYFAGSLAQLDGHM---MPPRDKVLIYGDGNVKGIWVDEDDVGT  201 (312)
T ss_dssp             STTHHHHHHHHHHH----HHHHTTCCBCEEECCEEHHHHTTTSSCTTCCS---SCCSSEECCBTTSCSEEEEECHHHHHH
T ss_pred             hhhhhhHHHHHHHH----hhcccccceEEeccceeecCCccchhhHHHHh---hhcccccccccccccccceeeHHHHHH
Confidence            33445555555554    45557899999999999997543211111000   001222 33444444 79999999999


Q ss_pred             HHHHhhcCCCC-Cce-EEEe-ccccCHHHHHHHHHhhCC
Q 020104          242 AHIFLLEYPDA-KGR-YICS-SHTLTIQEMAEFLSAKYP  277 (331)
Q Consensus       242 ~~~~~~~~~~~-~~~-~~~~-~~~~s~~e~~~~i~~~~~  277 (331)
                      +++.++.++.. ++. |+++ ++.+|++|+++.+.+..+
T Consensus       202 a~~~~l~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g  240 (312)
T d1qyda_         202 YTIKSIDDPQTLNKTMYIRPPMNILSQKEVIQIWERLSE  240 (312)
T ss_dssp             HHHHHTTCGGGSSSEEECCCGGGEEEHHHHHHHHHHHHT
T ss_pred             HHHHHhcCccccCceEEEeCCCcCCCHHHHHHHHHHHHC
Confidence            99999988765 444 5554 577999999999999776

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.94  E-value=1.9e-26  Score=191.34  Aligned_cols=225  Identities=17%  Similarity=0.193  Sum_probs=154.9

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCe--EEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYS--VTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      |++|||||||||||+++++.|+++|++  |+.+.|++     ++   ...+      ..+++++.+|+.+.+++.+++++
T Consensus         3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~-----~~---~~~~------~~~~~~~~~d~~~~~~~~~~~~~   68 (252)
T d2q46a1           3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSA-----QG---KEKI------GGEADVFIGDITDADSINPAFQG   68 (252)
T ss_dssp             CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCH-----HH---HHHT------TCCTTEEECCTTSHHHHHHHHTT
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCH-----HH---HHhc------cCCcEEEEeeecccccccccccc
Confidence            579999999999999999999999976  55566766     22   1111      14678999999999999999999


Q ss_pred             ccEEEEecccCCC---------------CCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcc
Q 020104           83 CTGVLHVATPVDF---------------EDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        83 ~d~Vih~a~~~~~---------------~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                      +|+|||+|+....               ...+.. ....+|+.++.+++..+.... .+++.+.|+...+.  ...  +.
T Consensus        69 ~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~--~~~--~~  142 (252)
T d2q46a1          69 IDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQ-YPEQVDWIGQKNQIDAAKVAG-VKHIVVVGSMGGTN--PDH--PL  142 (252)
T ss_dssp             CSEEEECCCCCCEECTTCCTTSCCCCCEECCTTC-SHHHHTTHHHHHHHHHHHHHT-CSEEEEEEETTTTC--TTC--GG
T ss_pred             ceeeEEEEeeccccccccchhhhhhcccccccch-hhhccccccceeecccccccc-ccccccccccccCC--CCc--cc
Confidence            9999999975431               011233 667889999999999999988 78999988866542  100  00


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCccccc
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGF  227 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (331)
                      .             ..+...|...+    .....+...++++++++||+.+||+......  .+       .+..... .
T Consensus       143 ~-------------~~~~~~~~~~~----~~~~~~~~~~~~~~~ilRp~~v~g~~~~~~~--~~-------~~~~~~~-~  195 (252)
T d2q46a1         143 N-------------KLGNGNILVWK----RKAEQYLADSGTPYTIIRAGGLLDKEGGVRE--LL-------VGKDDEL-L  195 (252)
T ss_dssp             G-------------GGGGCCHHHHH----HHHHHHHHHSSSCEEEEEECEEECSCTTSSC--EE-------EESTTGG-G
T ss_pred             c-------------cccccchhhhh----hhhhhhhhcccccceeecceEEECCCcchhh--hh-------hccCccc-c
Confidence            0             01112233333    3344455567999999999999999754211  00       1111111 1


Q ss_pred             CCCccceeHHHHHHHHHHhhcCCCCC-ceEEEecc----ccCHHHHHHHHHhhC
Q 020104          228 LLNTSMVHVDDVARAHIFLLEYPDAK-GRYICSSH----TLTIQEMAEFLSAKY  276 (331)
Q Consensus       228 ~~~~~~i~v~D~a~~~~~~~~~~~~~-~~~~~~~~----~~s~~e~~~~i~~~~  276 (331)
                      ....+++|++|+|++++.+++++... ++||++++    ..++.|+.+++.+..
T Consensus       196 ~~~~~~i~~~Dva~a~~~~l~~~~~~g~~~~i~~~~~~~~~~~~~~~~lf~~i~  249 (252)
T d2q46a1         196 QTDTKTVPRADVAEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKDFKALFSQVT  249 (252)
T ss_dssp             GSSCCEEEHHHHHHHHHHHTTCGGGTTEEEEEEECCTTTSCCCCCHHHHHTTCC
T ss_pred             cCCCCeEEHHHHHHHHHHHhCCccccCcEEEEeeCCCCCChhHHHHHHHHHHHH
Confidence            12258999999999999999987654 58886432    367778877776543

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=99.93  E-value=1e-26  Score=198.92  Aligned_cols=229  Identities=19%  Similarity=0.251  Sum_probs=156.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      ++|||||||||||||++++++|++.|++|++++|++....  ...+...+..+.  ..+++++.+|+.+...+.+.++++
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~--~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~   77 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASS--NSEKAQLLESFK--ASGANIVHGSIDDHASLVEAVKNV   77 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTT--THHHHHHHHHHH--TTTCEEECCCTTCHHHHHHHHHTC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcccc--chhHHHHHHhhc--cCCcEEEEeecccchhhhhhhhhc
Confidence            3679999999999999999999999999999999873111  111111111111  156899999999999999999999


Q ss_pred             cEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCC
Q 020104           84 TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDS  163 (331)
Q Consensus        84 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~  163 (331)
                      +.|+|+++...              ..++.+++++++..+ ++++++.||.....    .     +...         ..
T Consensus        78 ~~vi~~~~~~~--------------~~~~~~~~~a~~~~~-~~~~~~~s~~~~~~----~-----~~~~---------~~  124 (307)
T d1qyca_          78 DVVISTVGSLQ--------------IESQVNIIKAIKEVG-TVKRFFPSEFGNDV----D-----NVHA---------VE  124 (307)
T ss_dssp             SEEEECCCGGG--------------SGGGHHHHHHHHHHC-CCSEEECSCCSSCT----T-----SCCC---------CT
T ss_pred             eeeeecccccc--------------cchhhHHHHHHHHhc-cccceeeecccccc----c-----cccc---------cc
Confidence            99999987532              123456778888888 78888888854321    1     1110         11


Q ss_pred             CCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC-cccccCCC-ccceeHHHHHH
Q 020104          164 WGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR-EEYGFLLN-TSMVHVDDVAR  241 (331)
Q Consensus       164 ~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~i~v~D~a~  241 (331)
                      +...+...+...+..+    .+.+++++++||+.+||+...... ..   ......+.. ..++.+.. ++|+|++|+|+
T Consensus       125 ~~~~~~~~~~~~~~~~----~~~~~~~~i~r~~~v~g~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~  196 (307)
T d1qyca_         125 PAKSVFEVKAKVRRAI----EAEGIPYTYVSSNCFAGYFLRSLA-QA---GLTAPPRDKVVILGDGNARVVFVKEEDIGT  196 (307)
T ss_dssp             THHHHHHHHHHHHHHH----HHHTCCBEEEECCEEHHHHTTTTT-CT---TCSSCCSSEEEEETTSCCEEEEECHHHHHH
T ss_pred             cccccccccccccchh----hccCCCceecccceecCCCccchh-hh---hhhhhhcccceeeecccccccCCcHHHHHH
Confidence            1224555555555544    446899999999999998644311 10   011112222 23333333 79999999999


Q ss_pred             HHHHhhcCCCC-Cc-eEEE-eccccCHHHHHHHHHhhCC
Q 020104          242 AHIFLLEYPDA-KG-RYIC-SSHTLTIQEMAEFLSAKYP  277 (331)
Q Consensus       242 ~~~~~~~~~~~-~~-~~~~-~~~~~s~~e~~~~i~~~~~  277 (331)
                      +++.++.++.. ++ +|++ +++.+|+.|+++.+.+.+|
T Consensus       197 ~~~~~l~~~~~~~~~~~~~~~~~~~s~~ei~~~~~~~~G  235 (307)
T d1qyca_         197 FTIKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKID  235 (307)
T ss_dssp             HHHTTSSCGGGTTEEEECCCGGGEEEHHHHHHHHHHHTT
T ss_pred             HHHHHhcChhhcCceeEEeCCCCccCHHHHHHHHHHHHC
Confidence            99999988754 33 4565 4688999999999999988

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=99.91  E-value=3.4e-24  Score=187.11  Aligned_cols=226  Identities=15%  Similarity=0.070  Sum_probs=155.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCcc-HHHHhcC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDG-FDAAIAG   82 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~~~~~   82 (331)
                      ++|+|+|||||||||++++++|+++||+|++++|++     .... ...+...    ++++++++|+.|..+ +..++.+
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~-----~~~~-~~~~~~~----~~v~~~~gD~~d~~~~~~~a~~~   71 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL-----KGLI-AEELQAI----PNVTLFQGPLLNNVPLMDTLFEG   71 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCS-----CSHH-HHHHHTS----TTEEEEESCCTTCHHHHHHHHTT
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCc-----chhh-hhhhccc----CCCEEEEeeCCCcHHHHHHHhcC
Confidence            468999999999999999999999999999999987     2221 1222222    689999999998754 6667889


Q ss_pred             ccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcC
Q 020104           83 CTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLD  162 (331)
Q Consensus        83 ~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~  162 (331)
                      +|.+++.....           ...++..+.+++++|++.+ +++++++||......  ..                  .
T Consensus        72 ~~~~~~~~~~~-----------~~~~~~~~~~~~~aa~~ag-v~~~v~~Ss~~~~~~--~~------------------~  119 (350)
T d1xgka_          72 AHLAFINTTSQ-----------AGDEIAIGKDLADAAKRAG-TIQHYIYSSMPDHSL--YG------------------P  119 (350)
T ss_dssp             CSEEEECCCST-----------TSCHHHHHHHHHHHHHHHS-CCSEEEEEECCCGGG--TS------------------S
T ss_pred             CceEEeecccc-----------cchhhhhhhHHHHHHHHhC-CCceEEEeecccccc--CC------------------c
Confidence            99988765431           1234566789999999999 888888888654321  00                  1


Q ss_pred             CCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc-cc--ccCCCccceeH-HH
Q 020104          163 SWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE-EY--GFLLNTSMVHV-DD  238 (331)
Q Consensus       163 ~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~i~v-~D  238 (331)
                      .+..+|..+|...+..+..    .+++++++||+.+++.............  ....+... ..  ......+++++ +|
T Consensus       120 ~~~~~~~~~k~~~~~~~~~----~~~~~~~vr~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~D  193 (350)
T d1xgka_         120 WPAVPMWAPKFTVENYVRQ----LGLPSTFVYAGIYNNNFTSLPYPLFQME--LMPDGTFEWHAPFDPDIPLPWLDAEHD  193 (350)
T ss_dssp             CCCCTTTHHHHHHHHHHHT----SSSCEEEEEECEEGGGCBSSSCSSCBEE--ECTTSCEEEEESSCTTSCEEEECHHHH
T ss_pred             ccchhhhhhHHHHHHHHHh----hccCceeeeeceeecccccccccccccc--ccccccceeeecccCCCcceEEEeHHH
Confidence            1233577888877776554    6799999999998875432211110000  00011111 11  11122577775 79


Q ss_pred             HHHHHHHhhcCCC---CCceEEEeccccCHHHHHHHHHhhCC
Q 020104          239 VARAHIFLLEYPD---AKGRYICSSHTLTIQEMAEFLSAKYP  277 (331)
Q Consensus       239 ~a~~~~~~~~~~~---~~~~~~~~~~~~s~~e~~~~i~~~~~  277 (331)
                      +++++..++..+.   .+.+|+++++.+|+.|+++.+.+.+|
T Consensus       194 va~~v~~~l~~~~~~~~G~~~~~~g~~~T~~eia~~l~~~~G  235 (350)
T d1xgka_         194 VGPALLQIFKDGPQKWNGHRIALTFETLSPVQVCAAFSRALN  235 (350)
T ss_dssp             HHHHHHHHHHHCHHHHTTCEEEECSEEECHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCChhhcCCeEEEEeCCcCCHHHHHHHHHHHHC
Confidence            9999999987542   35578888889999999999999776

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.88  E-value=1.4e-21  Score=160.54  Aligned_cols=213  Identities=18%  Similarity=0.156  Sum_probs=152.0

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |...+|++|||||++.||.++++.|+++|++|++++|+.     +   .++.+.+.    -+.+++.+|+.|++++++++
T Consensus         1 M~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~-----~---~l~~~~~~----~~~~~~~~Dv~~~~~v~~~~   68 (242)
T d1ulsa_           1 MRLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEE-----G---PLREAAEA----VGAHPVVMDVADPASVERGF   68 (242)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH-----H---HHHHHHHT----TTCEEEECCTTCHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH-----H---HHHHHHHH----cCCeEEEEecCCHHHHHHHH
Confidence            777789999999999999999999999999999999987     2   22222211    25678999999999888776


Q ss_pred             c-------CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHhc----CCccEEEEecccceeecCCCC
Q 020104           81 A-------GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLKS----GTVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        81 ~-------~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~SS~~~~~~~~~~  143 (331)
                      +       ++|++||+||....      ..+++. ..+++|+.++..+.+++.+.    + ..+++++||....+     
T Consensus        69 ~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~-~~~~vNl~~~~~~~~~~~~~m~~~~-~~~i~~~ss~~~~~-----  141 (242)
T d1ulsa_          69 AEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWE-LVLRVNLTGSFLVAKAASEAMREKN-PGSIVLTASRVYLG-----  141 (242)
T ss_dssp             HHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHH-HHHHHHHHHHHHHHHHHHHHHTTTC-CEEEEEECCGGGGC-----
T ss_pred             HHHHHhcCCceEEEECCcccccCchhhCcchhhh-ccccccchhhhhhhhhccccccccc-cceeeeeccccccC-----
Confidence            4       68999999986542      122343 88999999998888876543    3 45677777754321     


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhC
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILG  220 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~  220 (331)
                                        .+....|+.+|.+.+.+.+.++.++   +++++.+.||.+-.+.... ..   .........
T Consensus       142 ------------------~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~-~~---~~~~~~~~~  199 (242)
T d1ulsa_         142 ------------------NLGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAK-VP---EKVREKAIA  199 (242)
T ss_dssp             ------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSS-SC---HHHHHHHHH
T ss_pred             ------------------CCCCcchHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCcccChhhhc-CC---HHHHHHHHh
Confidence                              1224579999999999999888765   7999999999997764332 11   111211111


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEec
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSS  260 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~  260 (331)
                       ..+++     .+...+|+|+++.+++....  ..| .+.++|
T Consensus       200 -~~pl~-----R~~~pedia~~v~fL~S~~s~~itG~~i~vDG  236 (242)
T d1ulsa_         200 -ATPLG-----RAGKPLEVAYAALFLLSDESSFITGQVLFVDG  236 (242)
T ss_dssp             -TCTTC-----SCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             -cCCCC-----CCCCHHHHHHHHHHHhchhhCCCCCcEEEECC
Confidence             12222     67789999999999997543  344 455654

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=99.87  E-value=5.1e-21  Score=159.96  Aligned_cols=223  Identities=15%  Similarity=0.216  Sum_probs=153.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|++|||||++.||.+++++|+++|++|++++|+.     +..++...  ++ .....+.++.+|+.|+++++++++  
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~-----~~~~~~~~--~l-~~~~~~~~~~~Dv~~~~~v~~~~~~~   76 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIAD-----DHGQKVCN--NI-GSPDVISFVHCDVTKDEDVRNLVDTT   76 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHH--HH-CCTTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHH--Hh-cCCCceEEEEccCCCHHHHHHHHHHH
Confidence            468999999999999999999999999999999987     22222211  11 122467889999999998888764  


Q ss_pred             -----CccEEEEecccCCCC-----CC--ChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCC
Q 020104           82 -----GCTGVLHVATPVDFE-----DK--EPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~-----~~--~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                           ++|++||+||.....     ..  +..+..+++|+.++..+.+++.    +.+ -.++|++||...+...     
T Consensus        77 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~g~ii~iss~~~~~~~-----  150 (268)
T d2bgka1          77 IAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAK-KGSIVFTASISSFTAG-----  150 (268)
T ss_dssp             HHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGT-CEEEEEECCGGGTCCC-----
T ss_pred             HHHcCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcC-CCCccccccccccccc-----
Confidence                 689999999854321     11  1223788999999888877664    334 4699999987654211     


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                      ......|+.+|.+.+.+.+.++.+.   +++++.+.||.+..+.........-...........
T Consensus       151 ----------------~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~  214 (268)
T d2bgka1         151 ----------------EGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAA  214 (268)
T ss_dssp             ----------------TTSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTC
T ss_pred             ----------------cccccccchhHHHHHhCHHHHHHHhChhCeEEEecCCCCccChHHhhhhcCCHHHHHHHHHhcc
Confidence                            0112369999999999999988764   799999999999887544322222222111111111


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                      ...+     .+...+|+|+++++++....  ..| .+.++|.
T Consensus       215 ~~~g-----r~~~pedvA~~v~fL~S~~s~~itGq~i~VDGG  251 (268)
T d2bgka1         215 NLKG-----TLLRAEDVADAVAYLAGDESKYVSGLNLVIDGG  251 (268)
T ss_dssp             SSCS-----CCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             ccCC-----CCcCHHHHHHHHHHHhChhhCCccCceEEECcC
Confidence            1222     57789999999999997543  344 5567554

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.87  E-value=2.7e-21  Score=158.23  Aligned_cols=207  Identities=17%  Similarity=0.114  Sum_probs=147.8

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      -++|++|||||++.||+++++.|++.|++|++++|+..     ..             .++..+++|+.|+++++++++ 
T Consensus         5 l~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~-----~~-------------~~~~~~~~Dv~~~~~v~~~~~~   66 (237)
T d1uzma1           5 FVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSG-----AP-------------KGLFGVEVDVTDSDAVDRAFTA   66 (237)
T ss_dssp             CCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSC-----CC-------------TTSEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc-----hh-------------cCceEEEEecCCHHHHHHHHHH
Confidence            36789999999999999999999999999999999872     11             345778999999998887764 


Q ss_pred             ------CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|++||+||....      ..+++ +..+++|+.++..+.+++    ++.+ ..++|++||.......     
T Consensus        67 ~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~-~~~~~vNl~~~~~~~~~~~~~m~~~~-~g~Iv~isS~~~~~~~-----  139 (237)
T d1uzma1          67 VEEHQGPVEVLVSNAGLSADAFLMRMTEEKF-EKVINANLTGAFRVAQRASRSMQRNK-FGRMIFIGSVSGLWGI-----  139 (237)
T ss_dssp             HHHHHSSCSEEEEECSCCC-----CCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCCCC---------
T ss_pred             HHHhcCCceEEEeeecccccccHhhCCHHHH-HHHHHhhhhhhhhhhhhhhhcccccC-CCceEEEcchhhccCC-----
Confidence                  68999999986441      22234 378999999987776644    4445 5699999997665211     


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                       +....|+.+|.+.+.+.+.++.+.   +++++.+.||.+..+....    .......... ..
T Consensus       140 -----------------~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~----~~~~~~~~~~-~~  197 (237)
T d1uzma1         140 -----------------GNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRA----LDERIQQGAL-QF  197 (237)
T ss_dssp             ------------------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHH----SCHHHHHHHG-GG
T ss_pred             -----------------cccHHHHHHHHHHHHHHHHHHhhhhcCCceeeeeeeCcCCChhhhc----cCHHHHHHHH-hc
Confidence                             124579999999999999888764   7999999999997652111    0011111111 11


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                      .+++     .+...+|+|+++.+++....  ..| .+.++|+
T Consensus       198 ~pl~-----R~~~pedvA~~v~fL~S~~s~~itG~~i~vdGG  234 (237)
T d1uzma1         198 IPAK-----RVGTPAEVAGVVSFLASEDASYISGAVIPVDGG  234 (237)
T ss_dssp             CTTC-----SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             CCCC-----CCcCHHHHHHHHHHHhCchhcCCcCCeEEECCC
Confidence            2222     67899999999999997543  344 4556543

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.86  E-value=5.3e-21  Score=156.96  Aligned_cols=209  Identities=15%  Similarity=0.196  Sum_probs=151.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|++|||||++.||+++++.|+++|++|++++|++     +..+.+.  .++   ..++.++.+|+.|+++++++++  
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~-----~~~~~~~--~~~---~~~~~~~~~Dv~~~~~v~~~~~~~   74 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILD-----EEGKAMA--AEL---ADAARYVHLDVTQPAQWKAAVDTA   74 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHH--HHT---GGGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHH--HHh---hCcceEEEeecCCHHHHHHHHHHH
Confidence            468999999999999999999999999999999987     2222211  111   2467889999999998887764  


Q ss_pred             -----CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCc
Q 020104           82 -----GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                           ++|++||+|+....      +.+++. ..+++|+.++..+.+++.    +.+ -.++|++||......       
T Consensus        75 ~~~~g~idilinnAG~~~~~~~~~~~~~~~~-~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Ii~isS~~~~~~-------  145 (244)
T d1nffa_          75 VTAFGGLHVLVNNAGILNIGTIEDYALTEWQ-RILDVNLTGVFLGIRAVVKPMKEAG-RGSIINISSIEGLAG-------  145 (244)
T ss_dssp             HHHHSCCCEEEECCCCCCCBCTTTSCHHHHH-HHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSC-------
T ss_pred             HHHhCCCeEEEECCcccCCCchhhCCHHHHh-HHhhcccchhhHHHHHHHhHHHhcC-cceEEeccccccccc-------
Confidence                 68999999986542      122343 789999999888887553    334 469999999775421       


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE  223 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  223 (331)
                                     .+....|+.+|...+.+.+.++.++   +++++.+.||.+..+.... .+..         ....
T Consensus       146 ---------------~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~-~~~~---------~~~~  200 (244)
T d1nffa_         146 ---------------TVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDW-VPED---------IFQT  200 (244)
T ss_dssp             ---------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTT-SCTT---------CSCC
T ss_pred             ---------------cccccchhhHHHHHHHHHHHHHHHhcccCEEEEEEeeCCccChhHhh-hhHH---------HHhc
Confidence                           1124579999999999999988765   7999999999987653211 0000         0011


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                      ++     ..+...+|+|+++++++....  ..| .+.++|.
T Consensus       201 pl-----~R~~~p~diA~~v~fL~s~~s~~itG~~i~vDGG  236 (244)
T d1nffa_         201 AL-----GRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGG  236 (244)
T ss_dssp             SS-----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             cc-----cCCCCHHHHHHHHHHHhChhhCCCcCCEEEECCC
Confidence            11     267899999999999997543  344 5566554

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=1.3e-21  Score=160.77  Aligned_cols=219  Identities=16%  Similarity=0.130  Sum_probs=154.3

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |.-.+|++|||||++.||+++++.|+++|++|++++|+.     +..+.+.  ++.    +++..+.+|+.|.+++++++
T Consensus         1 mdl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~-----~~l~~~~--~~~----~~~~~~~~Dv~~~~~v~~~~   69 (242)
T d1cyda_           1 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN-----SDLVSLA--KEC----PGIEPVCVDLGDWDATEKAL   69 (242)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHH--HHS----TTCEEEECCTTCHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHH--Hhc----CCCeEEEEeCCCHHHHHHHH
Confidence            677789999999999999999999999999999999987     2222211  122    46788999999999999988


Q ss_pred             c---CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCCcc
Q 020104           81 A---GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        81 ~---~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                      +   ++|++||+||....      ..+++ +..+++|+.++..+.+++..    .+.-.++|++||......        
T Consensus        70 ~~~g~iDilVnnAg~~~~~~~~~~~~~~~-~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~--------  140 (242)
T d1cyda_          70 GGIGPVDLLVNNAALVIMQPFLEVTKEAF-DRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVT--------  140 (242)
T ss_dssp             TTCCCCSEEEECCCCCCCBCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSC--------
T ss_pred             HHcCCCeEEEECCccccchhHHHHHHHHH-HHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhcccc--------
Confidence            6   58999999986442      22233 37899999999888876543    221368999999765421        


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcc
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREE  224 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~  224 (331)
                                    .+....|+.+|.+.+.+.+.++.+.   +++++.+.||.+..+...... .. ......... ..+
T Consensus       141 --------------~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~-~~-~~~~~~~~~-~~p  203 (242)
T d1cyda_         141 --------------FPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVS-AD-PEFARKLKE-RHP  203 (242)
T ss_dssp             --------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHT-CC-HHHHHHHHH-HST
T ss_pred             --------------CCccccccchHHHHHHHHHHHHHHhCccCeecccCCCCCccCHHHHhhc-CC-HHHHHHHHh-cCC
Confidence                          1224579999999999999988764   799999999988655211000 00 011111111 112


Q ss_pred             cccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          225 YGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       225 ~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                      +     ..+...+|+++++.+++....  ..| .+.++|.
T Consensus       204 l-----~R~~~peeva~~v~fL~S~~s~~itG~~i~vDGG  238 (242)
T d1cyda_         204 L-----RKFAEVEDVVNSILFLLSDRSASTSGGGILVDAG  238 (242)
T ss_dssp             T-----SSCBCHHHHHHHHHHHHSGGGTTCCSSEEEESTT
T ss_pred             C-----CCCcCHHHHHHHHHHHhCchhcCcCCceEEeCcc
Confidence            2     267889999999999997543  344 5566654

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=1.4e-21  Score=160.72  Aligned_cols=214  Identities=17%  Similarity=0.167  Sum_probs=152.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      ++|+++||||++.||+++++.|+++|++|++++|+.     +..+.+..  ++   ..+...+.+|+.|+++++++++  
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~-----~~l~~~~~--~~---~~~~~~~~~Dv~~~~~v~~~~~~~   72 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGAKVIGTATSE-----NGAQAISD--YL---GANGKGLMLNVTDPASIESVLEKI   72 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSH-----HHHHHHHH--HH---GGGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH-----HHHHHHHH--Hh---CCCCcEEEEEecCHHHhhhhhhhh
Confidence            468999999999999999999999999999999987     22222211  11   1467889999999988887764  


Q ss_pred             -----CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCc
Q 020104           82 -----GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                           ++|++||+|+....      ..+++ +..+++|+.++..+.+++.    +.+ -.++|++||......       
T Consensus        73 ~~~~g~iDilVnnAg~~~~~~~~~~~~~~~-~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~II~isS~~~~~~-------  143 (243)
T d1q7ba_          73 RAEFGEVDILVNNAGITRDNLLMRMKDEEW-NDIIETNLSSVFRLSKAVMRAMMKKR-HGRIITIGSVVGTMG-------  143 (243)
T ss_dssp             HHHTCSCSEEEECCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHHC-------
T ss_pred             hcccCCcceehhhhhhcccccccccccccc-ccccceeechhhhhHHHHHHHHHHcC-CCEeeeecchhhcCC-------
Confidence                 69999999986542      12234 3788999999888888764    344 469999999775521       


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE  223 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  223 (331)
                                     .+....|+.+|.+.+.+.+.++.+.   +++++.+.||.+-.+.....    .......... ..
T Consensus       144 ---------------~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~----~~~~~~~~~~-~~  203 (243)
T d1q7ba_         144 ---------------NGGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRAL----SDDQRAGILA-QV  203 (243)
T ss_dssp             ---------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTS----CHHHHHHHHT-TC
T ss_pred             ---------------CCCCHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecceEechhhhhh----hhhHHHHHHh-cC
Confidence                           1224579999999999999988764   79999999998865432111    1111111111 12


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                      +++     .+...+|+|.++.+++....  ..| .+.++|+
T Consensus       204 pl~-----R~~~pedvA~~v~fL~S~~s~~itGq~i~vdGG  239 (243)
T d1q7ba_         204 PAG-----RLGGAQEIANAVAFLASDEAAYITGETLHVNGG  239 (243)
T ss_dssp             TTS-----SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             CCC-----CCCCHHHHHHHHHHHhCchhcCCcCCeEEECCC
Confidence            222     67899999999999997543  344 5566553

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=2.5e-21  Score=160.34  Aligned_cols=221  Identities=13%  Similarity=0.075  Sum_probs=154.9

Q ss_pred             CCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            2 EEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         2 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      .-.+|++|||||++.||++++++|++.|++|++++|+.     +..+.. +.+.+   ...++.++.+|+.|++++.+++
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~-----~~~~~~~~~l~~---~g~~~~~~~~Dvs~~~~~~~~~   79 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINA-----DAANHVVDEIQQ---LGGQAFACRCDITSEQELSALA   79 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCH-----HHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHHH---cCCcEEEEEccCCCHHHHHHHH
Confidence            34568999999999999999999999999999999987     222221 22222   2357889999999998888766


Q ss_pred             c-------CccEEEEecccCCC-----CCCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCC
Q 020104           81 A-------GCTGVLHVATPVDF-----EDKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        81 ~-------~~d~Vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                      +       ++|++||+||....     ..+++. ..+++|+.++..+.+++.    +.+ -.++|++||......     
T Consensus        80 ~~~~~~~g~iDilvnnAG~~~~~~~e~~~e~~~-~~~~vNl~~~~~~~~~~~~~m~~~~-~g~Ii~isS~~~~~~-----  152 (255)
T d1fmca_          80 DFAISKLGKVDILVNNAGGGGPKPFDMPMADFR-RAYELNVFSFFHLSQLVAPEMEKNG-GGVILTITSMAAENK-----  152 (255)
T ss_dssp             HHHHHHHSSCCEEEECCCCCCCCCTTCCHHHHH-HHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTCC-----
T ss_pred             HHHHHHcCCCCEeeeCCcCCCCCcccCCHHHHH-HHHHHHHHHhhhhHHHHHhhhcccc-ccccccccccchhcc-----
Confidence            4       69999999986542     122343 788999999888877654    334 458999999765421     


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                                       .+....|+.+|.+.+.+.+.++.+.   +++++.+.||.+..+........   ........ 
T Consensus       153 -----------------~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~---e~~~~~~~-  211 (255)
T d1fmca_         153 -----------------NINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITP---EIEQKMLQ-  211 (255)
T ss_dssp             -----------------CTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCCH---HHHHHHHH-
T ss_pred             -----------------ccccccchhHHHHHHHHHHHHHHHhCccCeEEEEeeeCcCcChHhhccCCH---HHHHHHHh-
Confidence                             1224589999999999999888764   79999999999976532211111   11111111 


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecccc
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSHTL  263 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~~~  263 (331)
                      ..+++     .+...+|+|.++++++....  ..| .+.++|+.+
T Consensus       212 ~~pl~-----R~g~pedvA~~v~fL~S~~s~~itG~~i~vDGG~~  251 (255)
T d1fmca_         212 HTPIR-----RLGQPQDIANAALFLCSPAASWVSGQILTVSGGGV  251 (255)
T ss_dssp             TCSSC-----SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSC
T ss_pred             cCCCC-----CCcCHHHHHHHHHHHhCchhcCCcCCEEEECcCcc
Confidence            12222     67789999999999997543  344 556766543

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.7e-21  Score=157.67  Aligned_cols=216  Identities=16%  Similarity=0.168  Sum_probs=153.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|++|||||++.||+++++.|+++|++|++++|+.     +..+.+.  .+.    +++..+.+|+.|.++++++++  
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~-----~~l~~~~--~~~----~~~~~~~~Dv~d~~~v~~~~~~~   74 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ-----ADLDSLV--REC----PGIEPVCVDLGDWEATERALGSV   74 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHH--HHS----TTCEEEECCTTCHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH-----HHHHHHH--Hhc----CCCeEEEEeCCCHHHHHHHHHHh
Confidence            678999999999999999999999999999999987     2222211  122    467889999999999998886  


Q ss_pred             -CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCCcccCC
Q 020104           82 -GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVDMMDET  150 (331)
Q Consensus        82 -~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~E~  150 (331)
                       ++|++||+|+....      +.+++. ..+++|+.++..+.+++..    .+...++|++||......           
T Consensus        75 g~iDilVnnAg~~~~~~~~~~~~~~~~-~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~-----------  142 (244)
T d1pr9a_          75 GPVDLLVNNAAVALLQPFLEVTKEAFD-RSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRA-----------  142 (244)
T ss_dssp             CCCCEEEECCCCCCCBCGGGCCHHHHH-HHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSC-----------
T ss_pred             CCceEEEeccccccccchhhhhHHHHH-HHHHHhhhhhhHHHHHhhhHHHHhCCcceEeeccccccccc-----------
Confidence             68999999986442      222343 7899999988887776543    222469999999765421           


Q ss_pred             CCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCccccc
Q 020104          151 FWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGF  227 (331)
Q Consensus       151 ~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (331)
                                 .+....|+.+|.+.+.+.+.++.+.   +++++.+.||.+..+....... .... ...... ..+++ 
T Consensus       143 -----------~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~-~~~~-~~~~~~-~~pl~-  207 (244)
T d1pr9a_         143 -----------VTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWS-DPHK-AKTMLN-RIPLG-  207 (244)
T ss_dssp             -----------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHTTSC-SHHH-HHHHHT-TCTTC-
T ss_pred             -----------ccchhhhhhhHHHHHHHHHHHHHHhCCCcEEEEEEeeCcCcChHHhhhcc-ChHH-HHHHHh-cCCCC-
Confidence                       1224579999999999999988764   7999999999997653221111 1111 111111 12222 


Q ss_pred             CCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          228 LLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       228 ~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                          .+...+|+|.++.+++....  ..| .+.++|.
T Consensus       208 ----R~~~peevA~~v~fL~S~~a~~itG~~i~vDGG  240 (244)
T d1pr9a_         208 ----KFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGG  240 (244)
T ss_dssp             ----SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             ----CCcCHHHHHHHHHHHhCchhCCcCCcEEEECcc
Confidence                67899999999999997543  344 4556553

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=99.86  E-value=1.2e-20  Score=155.46  Aligned_cols=217  Identities=14%  Similarity=0.140  Sum_probs=147.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|.+|||||++.||+++++.|++.|++|++.+|++.     . .....+++.   ..++.++.+|+.|++++.++++  
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~-----~-~~~~~~~~~---g~~~~~~~~Dvs~~~~v~~~~~~~   74 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA-----P-EAEAAIRNL---GRRVLTVKCDVSQPGDVEAFGKQV   74 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC-----H-HHHHHHHHT---TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch-----H-HHHHHHHHc---CCcEEEEEeeCCCHHHHHHHHHHH
Confidence            4689999999999999999999999999999999862     1 111122222   2578899999999998887764  


Q ss_pred             -----CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCc
Q 020104           82 -----GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                           ++|++||+||....      +.+++. ..+++|+.++..+.+++.    +.+ -.++|++||......       
T Consensus        75 ~~~~G~iDilVnnAG~~~~~~~~~~~~e~~~-~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Iv~isS~~~~~~-------  145 (247)
T d2ew8a1          75 ISTFGRCDILVNNAGIYPLIPFDELTFEQWK-KTFEINVDSGFLMAKAFVPGMKRNG-WGRIINLTSTTYWLK-------  145 (247)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHH-HHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGGSC-------
T ss_pred             HHHcCCCCEEEECCCCCCCCChHhCCHHHhh-hhheeehhhhhHHHHHHHhHHHhcC-CCCccccccchhccc-------
Confidence                 69999999986542      222344 889999999888887664    444 469999999765421       


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE  223 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  223 (331)
                                     .+....|+.+|.+.+.+.+.++.+.   +++++.+.||.+..+........   ...........
T Consensus       146 ---------------~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~---~~~~~~~~~~~  207 (247)
T d2ew8a1         146 ---------------IEAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASALS---AMFDVLPNMLQ  207 (247)
T ss_dssp             ---------------CSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC---------------------CTTS
T ss_pred             ---------------CcccccchhhhccHHHHHHHHHHHhcccCeEEEEEeeCCCCCccccccccc---hhHHHHHHHhc
Confidence                           1224579999999999999888764   79999999999976643221100   00011111111


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                      .+     ..+...+|+|+++++++....  ..| .+.++|+
T Consensus       208 ~l-----~r~~~pedvA~~v~fL~S~~s~~itG~~i~vDGG  243 (247)
T d2ew8a1         208 AI-----PRLQVPLDLTGAAAFLASDDASFITGQTLAVDGG  243 (247)
T ss_dssp             SS-----CSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESSS
T ss_pred             cC-----CCCCCHHHHHHHHHHHhCchhcCCcCCeEEECCC
Confidence            11     256788999999999997543  344 4566554

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=99.85  E-value=1.9e-20  Score=155.18  Aligned_cols=218  Identities=14%  Similarity=0.159  Sum_probs=154.0

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |.-++|++|||||++.||+++++.|+++|++|++++|+.     +..+...  .++   ..++.++.+|+.|++++.+++
T Consensus         1 M~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~-----~~l~~~~--~~~---~~~~~~~~~Dvt~~~~v~~~~   70 (256)
T d1k2wa_           1 MRLDGKTALITGSARGIGRAFAEAYVREGARVAIADINL-----EAARATA--AEI---GPAACAIALDVTDQASIDRCV   70 (256)
T ss_dssp             CTTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCH-----HHHHHHH--HHH---CTTEEEEECCTTCHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHH--HHh---CCceEEEEeeCCCHHHHHHHH
Confidence            777789999999999999999999999999999999987     2222211  111   257889999999999888876


Q ss_pred             c-------CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCC
Q 020104           81 A-------GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        81 ~-------~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~  143 (331)
                      +       ++|++||+||....      ..+++ +..+++|+.++..+.+++..    .+.-.++|++||......    
T Consensus        71 ~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~-~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~----  145 (256)
T d1k2wa_          71 AELLDRWGSIDILVNNAALFDLAPIVEITRESY-DRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRRG----  145 (256)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSC----
T ss_pred             HHHHHHhCCccEEEeecccccccccccCCHHHH-HhhhceeeeccccchhhccchhHHhccCCccccccchhhccc----
Confidence            4       68999999986542      12234 37899999999888876432    222469999999765421    


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhC
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILG  220 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~  220 (331)
                                        .+....|+.+|.+.+.+.+.++.+.   +++++.+.||.+-.+....     +........+
T Consensus       146 ------------------~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~i~T~~~~~-----~~~~~~~~~~  202 (256)
T d1k2wa_         146 ------------------EALVGVYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEHWDG-----VDAKFADYEN  202 (256)
T ss_dssp             ------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTHHH-----HHHHHHHHHT
T ss_pred             ------------------cccccchhhhhhHHHHHHHHHHHHhcccCeEEEEEecCCCCchhhhh-----hhhhhhhhcc
Confidence                              1224579999999999999888765   7999999999887763110     1000000000


Q ss_pred             -----------CCcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          221 -----------NREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       221 -----------~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                                 ...++     ..+...+|+|.++++++....  ..| .+.++|+
T Consensus       203 ~~~~~~~~~~~~~~Pl-----gR~~~p~evA~~v~fL~S~~a~~iTG~~i~vDGG  252 (256)
T d1k2wa_         203 LPRGEKKRQVGAAVPF-----GRMGRAEDLTGMAIFLATPEADYIVAQTYNVDGG  252 (256)
T ss_dssp             CCTTHHHHHHHHHSTT-----SSCBCHHHHHHHHHHTTSGGGTTCCSCEEEESTT
T ss_pred             CChHHHHHHHHhcCCC-----CCCcCHHHHHHHHHHHhCchhCCccCceEEECcc
Confidence                       00112     267889999999999986543  334 5567654

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.85  E-value=6.5e-21  Score=157.49  Aligned_cols=217  Identities=15%  Similarity=0.125  Sum_probs=152.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|.+|||||++.||+++++.|++.|++|++++|+.     +..+....  ++.....++..+.+|++|++++.++++  
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~-----~~l~~~~~--~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~   81 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQ-----KSCDSVVD--EIKSFGYESSGYAGDVSKKEEISEVINKI   81 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSH-----HHHHHHHH--HHHTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH-----HHHHHHHH--HHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence            468899999999999999999999999999999987     22222211  111223568899999999998887764  


Q ss_pred             -----CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCc
Q 020104           82 -----GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                           ++|++||+|+....      ..+++ +..+++|+.++..+.+++.    +.+ -.++|++||..... +      
T Consensus        82 ~~~~g~iDilvnnag~~~~~~~~~~~~~~~-~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~IVnisS~~~~~-~------  152 (251)
T d2c07a1          82 LTEHKNVDILVNNAGITRDNLFLRMKNDEW-EDVLRTNLNSLFYITQPISKRMINNR-YGRIINISSIVGLT-G------  152 (251)
T ss_dssp             HHHCSCCCEEEECCCCCCCCCTTTCCHHHH-HHHHHHHTTHHHHHHHHHHHHHHHHT-CEEEEEECCTHHHH-C------
T ss_pred             HHhcCCceeeeeccccccccccccccHHHH-hhhheeeehhhhhhhhhcCcccccCC-CeEEEEECCHHhcC-C------
Confidence                 68999999986442      11234 4888999999887777654    444 57999999976552 1      


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE  223 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  223 (331)
                                     .+....|+.+|.+.+.+.+.++.+.   +++++.|.||.+..+.....    ........... .
T Consensus       153 ---------------~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~~~~----~~~~~~~~~~~-~  212 (251)
T d2c07a1         153 ---------------NVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKI----SEQIKKNIISN-I  212 (251)
T ss_dssp             ---------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----C----CHHHHHHHHTT-C
T ss_pred             ---------------CCCCHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCEeccccccc----CHHHHHHHHhc-C
Confidence                           1224579999999999999988764   79999999999977643221    11222222221 2


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                      +++     .+...+|+|+++++++....  ..| .+.++|+
T Consensus       213 pl~-----R~~~pedvA~~v~fL~S~~s~~itG~~i~vDGG  248 (251)
T d2c07a1         213 PAG-----RMGTPEEVANLACFLSSDKSGYINGRVFVIDGG  248 (251)
T ss_dssp             TTS-----SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             CCC-----CCcCHHHHHHHHHHHhCchhCCCcCcEEEECCC
Confidence            222     67899999999999997543  344 4556554

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=99.85  E-value=3.2e-20  Score=153.18  Aligned_cols=212  Identities=17%  Similarity=0.152  Sum_probs=149.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      ++|++|||||++.||.+++++|+++|++|++++|+.     +..+..  .+++   ..++.++.+|+.|+++++++++  
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~-----~~~~~~--~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~   73 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLD-----EEGAAT--AREL---GDAARYQHLDVTIEEDWQRVVAYA   73 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHH--HHTT---GGGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHH--HHHh---CCceEEEEcccCCHHHHHHHHHHH
Confidence            468999999999999999999999999999999987     222211  1222   2468899999999998887764  


Q ss_pred             -----CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCc
Q 020104           82 -----GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                           ++|++||+|+....      ..+++ +..+++|+.++..+.+++.    +.+ -.++|++||...+..       
T Consensus        74 ~~~~g~iDilVnnAg~~~~~~~~~~~~~~~-~~~~~vN~~~~~~~~~~~~p~m~~~~-~G~II~isS~~~~~~-------  144 (254)
T d1hdca_          74 REEFGSVDGLVNNAGISTGMFLETESVERF-RKVVEINLTGVFIGMKTVIPAMKDAG-GGSIVNISSAAGLMG-------  144 (254)
T ss_dssp             HHHHSCCCEEEECCCCCCCSCGGGSCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSC-------
T ss_pred             HHHcCCccEEEecCcccccccccccccccc-chhhhHHhhHHHHHHHHHHHHHhhcC-CCeecccccchhccc-------
Confidence                 68999999986542      12233 3789999999888888664    344 579999999775421       


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC-
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR-  222 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~-  222 (331)
                                     .+....|+.+|.+.+.+.+.++.+.   +++++.+.||.+..+.            ........ 
T Consensus       145 ---------------~~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~v~T~~------------~~~~~~~~~  197 (254)
T d1hdca_         145 ---------------LALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPM------------TAETGIRQG  197 (254)
T ss_dssp             ---------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH------------HHHHTCCCS
T ss_pred             ---------------ccchhhHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeCcccCcc------------chhcCHHHH
Confidence                           1224579999999999999988764   7999999999886541            11111010 


Q ss_pred             cc-cccCCCccc-eeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          223 EE-YGFLLNTSM-VHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       223 ~~-~~~~~~~~~-i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                      .. ........+ ...+|+|.++++++....  ..| .+.++|.
T Consensus       198 ~~~~~~~pl~R~g~~PedvA~~v~fL~S~~a~~itG~~i~vDGG  241 (254)
T d1hdca_         198 EGNYPNTPMGRVGNEPGEIAGAVVKLLSDTSSYVTGAELAVDGG  241 (254)
T ss_dssp             TTSCTTSTTSSCB-CHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             HHHHhCCCCCCCCCCHHHHHHHHHHHhchhhCCCCCceEEeCCC
Confidence            00 000000133 358999999999997543  344 5567554

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=99.85  E-value=6.8e-21  Score=158.14  Aligned_cols=222  Identities=16%  Similarity=0.129  Sum_probs=152.3

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      -.+|++|||||++.||+++++.|+++|++|++.+|+.     +..+...  .++.....++.++.+|+.|++++.++++ 
T Consensus         6 L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~-----~~l~~~~--~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~   78 (259)
T d2ae2a_           6 LEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQ-----KELNDCL--TQWRSKGFKVEASVCDLSSRSERQELMNT   78 (259)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHH--HHHHHTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHH--HHHHhcCCCceEEEeeCCCHHHHHHHHHH
Confidence            4578999999999999999999999999999999987     2222211  1111223567889999999988877653 


Q ss_pred             -------CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCC
Q 020104           82 -------GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 -------~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                             .+|++||+||....      +.+++. ..+++|+.++..+.+++.    +.+ -.++|++||......     
T Consensus        79 ~~~~~~~~idilvnnAG~~~~~~~~~~~~e~~~-~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Ii~isS~~~~~~-----  151 (259)
T d2ae2a_          79 VANHFHGKLNILVNNAGIVIYKEAKDYTVEDYS-LIMSINFEAAYHLSVLAHPFLKASE-RGNVVFISSVSGALA-----  151 (259)
T ss_dssp             HHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHH-HHHHHHTHHHHHHHHHHHHHHHHTS-SEEEEEECCGGGTSC-----
T ss_pred             HHHHhCCCceEEEECCceeccCccccCCHHHHH-HHHhcccceeEEEEeeccchhhhhc-ccccccccccccccc-----
Confidence                   38999999986442      122333 789999999888877664    334 469999999765421     


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCcc-HHHHHHHHhC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGS-VRSSLALILG  220 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~-~~~~~~~~~~  220 (331)
                                       .+....|+.+|...+.+.+.++.+.   +++++.+.||.+..+......... ..........
T Consensus       152 -----------------~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~  214 (259)
T d2ae2a_         152 -----------------VPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLID  214 (259)
T ss_dssp             -----------------CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHH
T ss_pred             -----------------cccccchHHHHHHHHHHHHHHHHHhCcCceEEEEeeeCcccCHHHHhhhhchhhHHHHHHHHh
Confidence                             1224579999999999999998765   799999999998755211100000 0111111111


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                       ..+++     .+...+|+|+++++++....  ..| .+.++|.
T Consensus       215 -~~pl~-----R~g~pedvA~~v~fL~S~~s~~itG~~i~VDGG  252 (259)
T d2ae2a_         215 -RCALR-----RMGEPKELAAMVAFLCFPAASYVTGQIIYVDGG  252 (259)
T ss_dssp             -TSTTC-----SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             -cCCCC-----CCcCHHHHHHHHHHHhCchhCCCcCcEEEECCC
Confidence             11222     67889999999999997543  344 4556554

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=99.85  E-value=2.9e-20  Score=153.77  Aligned_cols=220  Identities=13%  Similarity=0.092  Sum_probs=154.4

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCC-CCccHHHH
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLS-HPDGFDAA   79 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~   79 (331)
                      |...+|+||||||++.||..++++|+++|++|+++.|+.     +..+.+..+... ....++.++.+|+. +.+++.++
T Consensus         1 m~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~-----~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~   74 (254)
T d1sbya1           1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRV-----ENPTALAELKAI-NPKVNITFHTYDVTVPVAESKKL   74 (254)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESS-----CCHHHHHHHHHH-CTTSEEEEEECCTTSCHHHHHHH
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCc-----ccHHHHHHHHhh-CCCCCEEEEEeecCCCHHHHHHH
Confidence            777889999999999999999999999999999999987     343333333221 11257889999997 44456655


Q ss_pred             hc-------CccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhc------CCccEEEEecccceeecCCCCCCc
Q 020104           80 IA-------GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKS------GTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        80 ~~-------~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~------~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                      ++       ++|++||+||..+  ..++. ..+++|+.++.++.+++...      +...++|++||...+..       
T Consensus        75 ~~~~~~~~g~iDilvnnAG~~~--~~~~~-~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~~-------  144 (254)
T d1sbya1          75 LKKIFDQLKTVDILINGAGILD--DHQIE-RTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNA-------  144 (254)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCC--TTCHH-HHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSC-------
T ss_pred             HHHHHHHcCCCCEEEeCCCCCC--HHHHH-HHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhccC-------
Confidence            43       6999999999754  34555 99999999988888866532      12358999999776521       


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCC--CCCccHHHHHHHHhCC
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICP--KFAGSVRSSLALILGN  221 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~--~~~~~~~~~~~~~~~~  221 (331)
                                     .+....|+.+|.+...+.+.++.+.   +++++.+.||.|..+-...  ..............  
T Consensus       145 ---------------~~~~~~Y~asKaal~~~t~~la~el~~~gIrVn~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~--  207 (254)
T d1sbya1         145 ---------------IHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLL--  207 (254)
T ss_dssp             ---------------CTTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHHT--
T ss_pred             ---------------CCCCHHHHHHHHHHHHHHHHHHhhccccCeEEEEEEeCCCcCccccccccchhHHHHHHhccc--
Confidence                           1224579999999999998888654   8999999999998751100  00000000001001  


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCCCCceEEEecc
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPDAKGRYICSSH  261 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~~~  261 (331)
                              .+.....+++|++++.+++....|.++.+.+.
T Consensus       208 --------~~~~~~~e~va~~~~~~~~~~~tG~vi~vdgG  239 (254)
T d1sbya1         208 --------SHPTQTSEQCGQNFVKAIEANKNGAIWKLDLG  239 (254)
T ss_dssp             --------TSCCEEHHHHHHHHHHHHHHCCTTCEEEEETT
T ss_pred             --------cCCCCCHHHHHHHHHHhhhCCCCCCEEEECCC
Confidence                    12456899999999998887665667777664

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=99.85  E-value=1.5e-20  Score=154.77  Aligned_cols=215  Identities=13%  Similarity=0.068  Sum_probs=149.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|++|||||++.||+++++.|+++|++|++++|+.     +..+..+   +     .+..++++|+.|.++++++++  
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~-----~~~~~~~---~-----~~~~~~~~Dv~~~~~v~~~~~~~   70 (248)
T d2d1ya1           4 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRP-----EGKEVAE---A-----IGGAFFQVDLEDERERVRFVEEA   70 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST-----THHHHHH---H-----HTCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHH---H-----cCCeEEEEeCCCHHHHHHHHHHH
Confidence            468999999999999999999999999999999987     2222222   1     245678999999988887764  


Q ss_pred             -----CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCCc
Q 020104           82 -----GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                           ++|++||+||....      ..+++. ..+++|+.++.++.+++..    .+ -.++|++||...+..       
T Consensus        71 ~~~~G~iDiLVnnAG~~~~~~~~~~~~e~~~-~~~~vNl~g~~~~~~~~~p~m~~~~-~G~Ii~isS~~~~~~-------  141 (248)
T d2d1ya1          71 AYALGRVDVLVNNAAIAAPGSALTVRLPEWR-RVLEVNLTAPMHLSALAAREMRKVG-GGAIVNVASVQGLFA-------  141 (248)
T ss_dssp             HHHHSCCCEEEECCCCCCCBCTTTCCHHHHH-HHHHHHTHHHHHHHHHHHHHHHTTT-CEEEEEECCGGGTSB-------
T ss_pred             HHhcCCCCeEEEeCcCCCCCChhhCCHHHHH-HHHHhhhhhHhhhhhhhcccccccc-ccccccccccccccc-------
Confidence                 68999999986442      122333 7899999999888887753    34 469999999776521       


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCC--CccHHHHHHHHhCC
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKF--AGSVRSSLALILGN  221 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~--~~~~~~~~~~~~~~  221 (331)
                                     .+...+|+.+|.+.+.+.+.++.+.   +++++.+.||.+-.+......  ............. 
T Consensus       142 ---------------~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~-  205 (248)
T d2d1ya1         142 ---------------EQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWED-  205 (248)
T ss_dssp             ---------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC--------CHHHHT-
T ss_pred             ---------------ccccchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCchHHHHhhcCCCHHHHHHHHHh-
Confidence                           1224579999999999999888765   799999999988654210000  0000000011111 


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                      ..++     ..+...+|+++++.+++....  ..| .+.++|.
T Consensus       206 ~~pl-----~R~~~pedia~~v~fL~S~~s~~itG~~i~vDGG  243 (248)
T d2d1ya1         206 LHAL-----RRLGKPEEVAEAVLFLASEKASFITGAILPVDGG  243 (248)
T ss_dssp             TSTT-----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             cCCC-----CCCcCHHHHHHHHHHHhCchhcCCCCcEEEcCcC
Confidence            1111     267789999999999997543  344 5567553

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=99.85  E-value=1.1e-20  Score=156.11  Aligned_cols=217  Identities=16%  Similarity=0.195  Sum_probs=150.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|++|||||++.||+++++.|++.|++|++++|+.     +..+.....  + ....++.++.+|+.|++++.++++  
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~-----~~~~~~~~~--~-~~~~~~~~~~~Dv~~~~~v~~~~~~~   76 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHS-----DVGEKAAKS--V-GTPDQIQFFQHDSSDEDGWTKLFDAT   76 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHH--H-CCTTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHH--h-CCCCcEEEEEccCCCHHHHHHHHHHH
Confidence            468999999999999999999999999999999987     232222211  1 123578999999999998887764  


Q ss_pred             -----CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCc
Q 020104           82 -----GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                           ++|++||+|+....      ..+++. ..+++|+.++..+.+++.    +.+.-.++|++||..... +      
T Consensus        77 ~~~~G~iDiLVnnAg~~~~~~~~~~~~~~~~-~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~-~------  148 (251)
T d1zk4a1          77 EKAFGPVSTLVNNAGIAVNKSVEETTTAEWR-KLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFV-G------  148 (251)
T ss_dssp             HHHHSSCCEEEECCCCCCCCCTTTCCHHHHH-HHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTS-C------
T ss_pred             HHHhCCceEEEeccccccccchhcccccchh-hhccccccccchhHHHHHHHHHhcCCCCceEeeeccceec-c------
Confidence                 68999999986542      122333 788999999888888765    333124899999976542 1      


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH-----cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhC-
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE-----HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILG-  220 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~-----~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~-  220 (331)
                                     .+....|+.+|.+.+.+.+.++.+     ++++++.+.||.+..+..... .. .   ...... 
T Consensus       149 ---------------~~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~~~~~-~~-~---~~~~~~~  208 (251)
T d1zk4a1         149 ---------------DPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDL-PG-A---EEAMSQR  208 (251)
T ss_dssp             ---------------CTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTS-TT-H---HHHHTST
T ss_pred             ---------------CCCchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCChhHHhc-CC-H---HHHHHHH
Confidence                           112457999999999998887654     479999999999976531110 00 0   011111 


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                      ...++     ..+...+|+|.++++++....  ..| .+.++|+
T Consensus       209 ~~~pl-----~R~~~pedvA~~v~fL~S~~s~~itG~~i~vDGG  247 (251)
T d1zk4a1         209 TKTPM-----GHIGEPNDIAYICVYLASNESKFATGSEFVVDGG  247 (251)
T ss_dssp             TTCTT-----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             hCCCC-----CCCcCHHHHHHHHHHHhCchhCCCcCcEEEECcc
Confidence            11122     267899999999999997543  344 4556554

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=99.84  E-value=1.6e-20  Score=155.91  Aligned_cols=220  Identities=15%  Similarity=0.108  Sum_probs=150.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|++|||||++.||.++++.|+++|++|++++|+.+    ...+. .+.+.+   ...++.++.+|+.|++++.++++ 
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~----~~~~~~~~~~~~---~g~~~~~~~~Dvt~~~~v~~~~~~   78 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKE----DEANSVLEEIKK---VGGEAIAVKGDVTVESDVINLVQS   78 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH----HHHHHHHHHHHH---TTCEEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcH----HHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHH
Confidence            5689999999999999999999999999999999862    11111 111222   22468889999999998887764 


Q ss_pred             ------CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|++||+|+....      +.+++. ..+++|+.++..+.+++.    +.+.-.++|++||......      
T Consensus        79 ~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~-~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~~------  151 (261)
T d1geea_          79 AIKEFGKLDVMINNAGLENPVSSHEMSLSDWN-KVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIP------  151 (261)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHH-HHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSC------
T ss_pred             HHHHhCCCCEeeccceecCCcchhhcCHHHHH-HHHHHhcccchhHHHHHhhhhccccccccccccccchhccc------
Confidence                  68999999986542      222333 789999999887777654    3442346889999764420      


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                      .+....|+.+|.+.+.+.+.++.+.   +++++.+.||.+..+.......  -........ ..
T Consensus       152 ----------------~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~--~~~~~~~~~-~~  212 (261)
T d1geea_         152 ----------------WPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFA--DPEQRADVE-SM  212 (261)
T ss_dssp             ----------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHH--SHHHHHHHH-TT
T ss_pred             ----------------CccccccccCCccchhhHHHHHHHhhhhCcEEEEEeeCcCcCHhHhhhcC--CHHHHHHHH-hc
Confidence                            1124579999999999999888765   7999999999997653110000  000111111 11


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                      .+++     .+...+|+|+++++++....  ..| .+.++|.
T Consensus       213 ~pl~-----R~~~pediA~~v~fL~S~~s~~itG~~i~vDGG  249 (261)
T d1geea_         213 IPMG-----YIGEPEEIAAVAAWLASSEASYVTGITLFADGG  249 (261)
T ss_dssp             CTTS-----SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             CCCC-----CCCCHHHHHHHHHHHhCchhcCCcCCeEEECCC
Confidence            2222     67789999999999997543  344 5566553

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=99.84  E-value=8.5e-21  Score=157.89  Aligned_cols=228  Identities=14%  Similarity=0.105  Sum_probs=148.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      ++|++|||||++.||+++++.|+++|++|++++|+..    ...+.. +.+.+.  ...++.++.+|+.|+++++++++ 
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~----~~~~~~~~~~~~~--~g~~~~~~~~Dv~~~~~v~~~~~~   76 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDA----AEIEKVRAGLAAQ--HGVKVLYDGADLSKGEAVRGLVDN   76 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCH----HHHHHHHHHHHHH--HTSCEEEECCCTTSHHHHHHHHHH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcH----HHHHHHHHHHHHh--cCCcEEEEECCCCCHHHHHHHHHH
Confidence            3679999999999999999999999999999999751    111111 111111  12468899999999998888764 


Q ss_pred             ------CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|++||+||....      +.+++. ..+++|+.++..+.+++    ++.+ -.++|++||......      
T Consensus        77 ~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~-~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Iv~isS~~~~~~------  148 (260)
T d1x1ta1          77 AVRQMGRIDILVNNAGIQHTALIEDFPTEKWD-AILALNLSAVFHGTAAALPHMKKQG-FGRIINIASAHGLVA------  148 (260)
T ss_dssp             HHHHHSCCSEEEECCCCCCCCCGGGCCHHHHH-HHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSC------
T ss_pred             HHHHhCCCcEEEeecccccCCchhhhhHHhhh-hhhhccccccccccchhhhhHhhcC-CceEeecccccceec------
Confidence                  58999999986542      222343 88999999887776655    4445 469999999775521      


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHH-HHHHhCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSS-LALILGN  221 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~-~~~~~~~  221 (331)
                                      .+....|+.+|.+.+.+.+.++.+.   +++++.+.||.+-.+............. .......
T Consensus       149 ----------------~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~  212 (260)
T d1x1ta1         149 ----------------SANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAA  212 (260)
T ss_dssp             ----------------CTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC----------------------
T ss_pred             ----------------cCCcchhhhhhhhHHHhHHHHHHHhchhCcEEEEEecCCCCChhhhhhhhhhhhhcCCChHHHH
Confidence                            1224579999999999999988764   7999999999997664221110000000 0000000


Q ss_pred             Cccccc-CCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          222 REEYGF-LLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       222 ~~~~~~-~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                      ...+.. .....+...+|+|+++++++....  ..| .+.++|+
T Consensus       213 ~~~~~~~~Pl~R~g~pediA~~v~fL~S~~a~~itG~~i~vDGG  256 (260)
T d1x1ta1         213 RELLSEKQPSLQFVTPEQLGGTAVFLASDAAAQITGTTVSVDGG  256 (260)
T ss_dssp             --CHHHHCTTCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             HHHHHhcCCCCCCcCHHHHHHHHHHHhChhhCCCcCCEEEECcc
Confidence            000000 001267899999999999997543  344 4556554

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=99.84  E-value=2.2e-20  Score=154.87  Aligned_cols=222  Identities=16%  Similarity=0.127  Sum_probs=152.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|++|||||++.||+.+++.|+++|++|++++|+.     +..+.. ..+.+ .....++..+.+|+.|++++.++++ 
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~-----~~l~~~~~~~~~-~~~~~~~~~~~~Dvt~~~~v~~~~~~   76 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSS-----EGLEASKAAVLE-TAPDAEVLTTVADVSDEAQVEAYVTA   76 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHH-HCTTCCEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHHh-hCCCCeEEEEeccCCCHHHHHHHHHH
Confidence            468999999999999999999999999999999987     222221 11111 1122468889999999998887764 


Q ss_pred             ------CccEEEEecccCCC-------CCCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCC
Q 020104           82 ------GCTGVLHVATPVDF-------EDKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                            ++|++||+||....       +.+++ +..+++|+.++..+.+++.    +.+ -.++|++||..... +    
T Consensus        77 ~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~-~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Ii~isS~~~~~-~----  149 (258)
T d1iy8a_          77 TTERFGRIDGFFNNAGIEGKQNPTESFTAAEF-DKVVSINLRGVFLGLEKVLKIMREQG-SGMVVNTASVGGIR-G----  149 (258)
T ss_dssp             HHHHHSCCSEEEECCCCCCCCBCGGGSCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTS-B----
T ss_pred             HHHHhCCCCEEEECCcccccCCchhhhhhhHH-HHHhhhhccchhhhhhhhHhhhhhhc-CCCCcccccHhhcc-C----
Confidence                  68999999985431       12233 3789999999988888664    334 46999999976542 1    


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCC----CCccHHHHHHH
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPK----FAGSVRSSLAL  217 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~----~~~~~~~~~~~  217 (331)
                                       .+....|+.+|.+.+.+.+.++.+.   +++++.+.||.+..+.....    ...........
T Consensus       150 -----------------~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~  212 (258)
T d1iy8a_         150 -----------------IGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEE  212 (258)
T ss_dssp             -----------------CSSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHH
T ss_pred             -----------------CCCchHHHHHHHHHHHHHHHHHHHhCccCceEEEEeeCcccCHHHHHHHhhcCcccHHHHHHH
Confidence                             1224589999999999999888765   79999999999876521100    00011111111


Q ss_pred             HhCCCcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          218 ILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       218 ~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                      ... ..++     ..+...+|+|.++++++....  ..| .+.++|.
T Consensus       213 ~~~-~~pl-----~R~~~p~dvA~~v~fL~S~~s~~itG~~i~VDGG  253 (258)
T d1iy8a_         213 FIQ-VNPS-----KRYGEAPEIAAVVAFLLSDDASYVNATVVPIDGG  253 (258)
T ss_dssp             HHT-TCTT-----CSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred             HHh-cCCC-----CCCcCHHHHHHHHHHHhCchhcCCcCceEEcCcc
Confidence            111 1122     267889999999999997543  344 4556553

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.5e-20  Score=154.85  Aligned_cols=215  Identities=16%  Similarity=0.152  Sum_probs=149.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|++|||||++.||+++++.|+++|++|++++|+.     +.   ++.+.+.   ..++.++.+|+.|+++++++++  
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~-----~~---~~~~~~~---~~~~~~~~~Dvs~~~~v~~~~~~~   73 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDE-----SG---GRALEQE---LPGAVFILCDVTQEDDVKTLVSET   73 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH-----HH---HHHHHHH---CTTEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH-----HH---HHHHHHh---cCCCeEEEccCCCHHHHHHHHHHH
Confidence            468999999999999999999999999999999987     22   2222211   1467899999999998887764  


Q ss_pred             -----CccEEEEecccCCC-------CCCChhhHHHHHHHHHHHHHHHHHHhc---CCccEEEEecccceeecCCCCCCc
Q 020104           82 -----GCTGVLHVATPVDF-------EDKEPEEVITQRAINGTLGILKSCLKS---GTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                           ++|++||+|+....       ..+++ +..+++|+.++..+.+++...   + -.++|++||......       
T Consensus        74 ~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~-~~~~~vNl~g~~~~~~~~~p~m~~~-~G~Ii~isS~~~~~~-------  144 (250)
T d1ydea1          74 IRRFGRLDCVVNNAGHHPPPQRPEETSAQGF-RQLLELNLLGTYTLTKLALPYLRKS-QGNVINISSLVGAIG-------  144 (250)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECCHHHHHC-------
T ss_pred             HHhcCCCCEEEecccccccccccccccHHHH-HHHHHHhhhhHHHHHHHhhHHHHhC-CCCCccccccccccc-------
Confidence                 68999999985431       11123 378999999988888866532   2 259999999775521       


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCC---CCCCccHHHHHHHHhC
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFIC---PKFAGSVRSSLALILG  220 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~---~~~~~~~~~~~~~~~~  220 (331)
                                     .+...+|+.+|.+.+.+.+.++.+.   +++++.+.||.|..+...   ...+............
T Consensus       145 ---------------~~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~  209 (250)
T d1ydea1         145 ---------------QAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLA  209 (250)
T ss_dssp             ---------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHT
T ss_pred             ---------------ccCcchhHHHHhhHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHHhhcCCCHHHHHHHHHhc
Confidence                           1224589999999999999988765   799999999998654210   0011111111111111


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCC-CCCc-eEEEec
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYP-DAKG-RYICSS  260 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~-~~~~-~~~~~~  260 (331)
                      .  ++     ..+...+|+|+++++++... ...| .+.++|
T Consensus       210 ~--pl-----~R~g~p~eva~~v~fL~Sda~~itG~~i~vDG  244 (250)
T d1ydea1         210 Q--PL-----GRMGQPAEVGAAAVFLASEANFCTGIELLVTG  244 (250)
T ss_dssp             S--TT-----SSCBCHHHHHHHHHHHHHHCTTCCSCEEEEST
T ss_pred             C--CC-----CCCCCHHHHHHHHHHHhCccCCCcCCeEEECC
Confidence            1  22     26789999999999988532 2244 455654

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.84  E-value=1.7e-20  Score=154.88  Aligned_cols=220  Identities=17%  Similarity=0.142  Sum_probs=151.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      ++|++|||||++.||+++++.|+++|++|++++|+.     +..+. .+.+.+.  ...++.++.+|+.|++++.++++ 
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~-----~~~~~~~~~l~~~--~g~~~~~~~~Dv~~~~~v~~~~~~   76 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL-----EEASEAAQKLTEK--YGVETMAFRCDVSNYEEVKKLLEA   76 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHHH--HCCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHHHH--hCCcEEEEEccCCCHHHHHHHHHH
Confidence            468999999999999999999999999999999987     22221 1111111  12467889999999988887764 


Q ss_pred             ------CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|++||+||....      +.+++. ..+++|+.++..+.+++..    .+ -.++|++||......+     
T Consensus        77 ~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~-~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Ii~i~S~~~~~~~-----  149 (251)
T d1vl8a_          77 VKEKFGKLDTVVNAAGINRRHPAEEFPLDEFR-QVIEVNLFGTYYVCREAFSLLRESD-NPSIINIGSLTVEEVT-----  149 (251)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHH-HHHHHHTHHHHHHHHHHHHHHTTCS-SCEEEEECCGGGTCCC-----
T ss_pred             HHHHcCCCCEEEECCCCCCCCChhhCCHHHHH-HHHHhhhhhhhhhhhhhhhcccccc-cccccccccchhcccc-----
Confidence                  69999999986442      222333 7889999998888887653    34 4699999986532101     


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                      .+....|+.+|.+.+.+.+.++.+.   +++++.+.||.+-.+....... .. ........ .
T Consensus       150 ----------------~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~~~~~~~-~~-~~~~~~~~-~  210 (251)
T d1vl8a_         150 ----------------MPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFS-DP-EKLDYMLK-R  210 (251)
T ss_dssp             ----------------SSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHT-CH-HHHHHHHH-T
T ss_pred             ----------------CccccchHHHHHhHHHHHHHHHHHhcccCeEEEEEeeCcccCHHHHhccC-CH-HHHHHHHh-c
Confidence                            1113479999999999999888765   7999999999997664221000 00 11111111 1


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                      .+++     .+...+|+|+++++++....  ..| .+.++|+
T Consensus       211 ~pl~-----R~~~pedvA~~v~fL~S~~a~~itG~~i~vDGG  247 (251)
T d1vl8a_         211 IPLG-----RTGVPEDLKGVAVFLASEEAKYVTGQIIFVDGG  247 (251)
T ss_dssp             CTTS-----SCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             CCCC-----CCCCHHHHHHHHHHHhCchhCCCcCcEEEeCcC
Confidence            2222     56788999999999997543  344 4556553

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=99.83  E-value=1.2e-20  Score=156.02  Aligned_cols=220  Identities=14%  Similarity=0.118  Sum_probs=148.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|++|||||++.||.++++.|+++|++|++++|+.     +..+.+..  ++   ..+..++.+|+.|.++++++++  
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~-----~~~~~~~~--~~---~~~~~~~~~Dv~~~~~~~~~~~~~   74 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINE-----AAGQQLAA--EL---GERSMFVRHDVSSEADWTLVMAAV   74 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCH-----HHHHHHHH--HH---CTTEEEECCCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHH--Hh---CCCeEEEEeecCCHHHHHHHHHHH
Confidence            468999999999999999999999999999999987     22222211  11   2467889999999988887764  


Q ss_pred             -----CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHhc--CCccEEEEecccceeecCCCCCCccc
Q 020104           82 -----GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLKS--GTVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                           ++|++||+||....      +.+++. ..+++|+.++..+.+++...  .+-.++|++||......         
T Consensus        75 ~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~-~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~~~---------  144 (253)
T d1hxha_          75 QRRLGTLNVLVNNAGILLPGDMETGRLEDFS-RLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWLP---------  144 (253)
T ss_dssp             HHHHCSCCEEEECCCCCCCBCTTTCCHHHHH-HHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSC---------
T ss_pred             HHHhCCCCeEEecccccCCCCcccCCHHHHH-HHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhhcC---------
Confidence                 68999999986542      122333 88999999988877766542  11369999999765421         


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc-----CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH-----GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE  223 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~-----~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  223 (331)
                                   .+....|+.+|.+.+.+.+.++.+.     +++++.+.||.+..+......+....  ..... ...
T Consensus       145 -------------~~~~~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~~~~~~~~~~~~--~~~~~-~~~  208 (253)
T d1hxha_         145 -------------IEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKGVS--KEMVL-HDP  208 (253)
T ss_dssp             -------------CTTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCTTCC--HHHHB-CBT
T ss_pred             -------------ccccccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCHhHHhhCcchhh--HHHHH-hCc
Confidence                         1224579999999998888776543     59999999999976521100000000  00111 111


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                      ....  ...+...+|+|+++++++....  ..| .+.++|.
T Consensus       209 ~~~~--~gr~~~pedvA~~v~fL~S~~s~~itG~~i~VDGG  247 (253)
T d1hxha_         209 KLNR--AGRAYMPERIAQLVLFLASDESSVMSGSELHADNS  247 (253)
T ss_dssp             TTBT--TCCEECHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred             cccc--cCCCCCHHHHHHHHHHHhChhhCCCcCcEEEECcc
Confidence            1110  1267889999999999997543  344 4567654

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=99.83  E-value=1e-19  Score=150.71  Aligned_cols=220  Identities=16%  Similarity=0.129  Sum_probs=149.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|++|||||++.||+++++.|+++|++|++++|++     ...+....  ++......+.++.+|+.+.++++++++  
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~-----~~l~~~~~--~~~~~~~~~~~~~~D~s~~~~~~~~~~~~   77 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE-----KELDECLE--IWREKGLNVEGSVCDLLSRTERDKLMQTV   77 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHH--HHHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHH--HHHhcCCCceEEEeecCCHHHHHHHHHHH
Confidence            578999999999999999999999999999999987     22222111  112223567888999999988877653  


Q ss_pred             ------CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            .+|++||+|+....      ..+++. ..+++|+.++..+.+++.    +.+ ..++|++||.......     
T Consensus        78 ~~~~~g~idilinnag~~~~~~~~~~~~~~~~-~~~~~nl~~~~~~~~~~~~~m~~~~-~g~ii~isS~~~~~~~-----  150 (258)
T d1ae1a_          78 AHVFDGKLNILVNNAGVVIHKEAKDFTEKDYN-IIMGTNFEAAYHLSQIAYPLLKASQ-NGNVIFLSSIAGFSAL-----  150 (258)
T ss_dssp             HHHTTSCCCEEEECCCCCCCCCTTTCCHHHHH-HHHHHHTHHHHHHHHHHHHHHHHHT-SEEEEEECCGGGTSCC-----
T ss_pred             HHHhCCCcEEEeccccccccCccccCCHHHHh-hhhhhcccccccccccccccccccc-cccccccccccccccc-----
Confidence                  38999999986542      222344 889999999888877665    334 5799999997764211     


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCc--cHHHHHHHHhC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAG--SVRSSLALILG  220 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~--~~~~~~~~~~~  220 (331)
                                       +....|+.+|.+.+.+.+.++.++   ++++..+.||.+..+........  ...........
T Consensus       151 -----------------~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~  213 (258)
T d1ae1a_         151 -----------------PSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIV  213 (258)
T ss_dssp             -----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHH
T ss_pred             -----------------ccchhHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeCcccCcchhhhhhhhhhhHHHHHHHHh
Confidence                             124479999999999999988775   79999999999987643221110  00111111111


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCCC--CCce-EEEec
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKGR-YICSS  260 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~  260 (331)
                       ..+++     .+...+|+|.++.+++....  ..|. +.++|
T Consensus       214 -~~plg-----R~~~pediA~~v~fL~S~~s~~itG~~i~vDG  250 (258)
T d1ae1a_         214 -KTPMG-----RAGKPQEVSALIAFLCFPAASYITGQIIWADG  250 (258)
T ss_dssp             -HSTTC-----SCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             -cCCCC-----CCcCHHHHHHHHHHHhChhhCCCcCcEEEeCC
Confidence             11222     67899999999999996543  3554 45554

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=99.83  E-value=6.6e-20  Score=152.28  Aligned_cols=220  Identities=15%  Similarity=0.145  Sum_probs=151.3

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|++|||||++.||+++++.|+++|++|++++|+.     +..+....  ++.....++..+.+|+.|+++++++++  
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~-----~~l~~~~~--~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~   76 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR-----EALEKAEA--SVREKGVEARSYVCDVTSEEAVIGTVDSV   76 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHH--HHHTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHH--HHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence            468999999999999999999999999999999987     22222211  112223578899999999988887764  


Q ss_pred             -----CccEEEEecccCCC-------CCCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCC
Q 020104           82 -----GCTGVLHVATPVDF-------EDKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                           ++|++||+||....       +.+++ +..+++|+.++..+.+++.    +.+ -.++|++||...+..      
T Consensus        77 ~~~~g~iDilVnnaG~~~~~~~~~~~~~~~~-~~~~~vnl~~~~~~~~~~~~~m~~~~-~G~II~isS~~~~~~------  148 (260)
T d1zema1          77 VRDFGKIDFLFNNAGYQGAFAPVQDYPSDDF-ARVLTINVTGAFHVLKAVSRQMITQN-YGRIVNTASMAGVKG------  148 (260)
T ss_dssp             HHHHSCCCEEEECCCCCCCCBCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHSC------
T ss_pred             HHHhCCCCeehhhhccccccCccccccHHHH-HhhccccccccccchhhHHhhhhhhc-CCCCCeeechhhccC------
Confidence                 69999999985431       12233 3788999999888877664    334 469999999775521      


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCC------------CCCcc
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICP------------KFAGS  210 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~------------~~~~~  210 (331)
                                      .+...+|+.+|.+.+.+.+.++.+.   +++++.+.||.|-.+....            .....
T Consensus       149 ----------------~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~  212 (260)
T d1zema1         149 ----------------PPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTD  212 (260)
T ss_dssp             ----------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSS
T ss_pred             ----------------CcchHHHHHHHHHHHHHHHHHHHHhhhhCCEEEEeccCcccCcchhhcchhhhhhhcccccccC
Confidence                            1124579999999999999988765   7999999999997652100            00000


Q ss_pred             HHHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEec
Q 020104          211 VRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSS  260 (331)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~  260 (331)
                      .......+... .++     ..+...+|+|.++++++....  ..| .+.++|
T Consensus       213 ~~~~~~~~~~~-~Pl-----~R~g~pedvA~~v~fL~S~~s~~itG~~i~VDG  259 (260)
T d1zema1         213 PKVVAQQMIGS-VPM-----RRYGDINEIPGVVAFLLGDDSSFMTGVNLPIAG  259 (260)
T ss_dssp             HHHHHHHHHHT-STT-----SSCBCGGGSHHHHHHHHSGGGTTCCSCEEEESC
T ss_pred             HHHHHHHHHhc-CCC-----CCCcCHHHHHHHHHHHhCchhcCccCCeEEeCC
Confidence            11111111111 112     257788999999999997543  234 455544

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.83  E-value=8.2e-20  Score=151.33  Aligned_cols=215  Identities=18%  Similarity=0.216  Sum_probs=148.7

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc---
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA---   81 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---   81 (331)
                      |.+|||||++.||+++++.|+++|++|++++|+.     +..+.. +.+.+   ...++.++.+|+.|++++.++++   
T Consensus         2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~-----~~l~~~~~~i~~---~g~~~~~~~~Dv~~~~~v~~~~~~~~   73 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYND-----ATAKAVASEINQ---AGGHAVAVKVDVSDRDQVFAAVEQAR   73 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHHh---cCCcEEEEEeeCCCHHHHHHHHHHHH
Confidence            4469999999999999999999999999999987     222222 11221   22568899999999998887764   


Q ss_pred             ----CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCcc
Q 020104           82 ----GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 ----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                          ++|++||+||....      +.+++ +..+++|+.++..+.+++.    +.+...++|++||......        
T Consensus        74 ~~~g~iDilVnnAG~~~~~~~~~~~~~~~-~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~--------  144 (255)
T d1gega_          74 KTLGGFDVIVNNAGVAPSTPIESITPEIV-DKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVG--------  144 (255)
T ss_dssp             HHTTCCCEEEECCCCCCCBCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSC--------
T ss_pred             HHhCCccEEEecccccccCcHHHhhhhhh-hhhhhhcccchhhhhhhhcchhhhhccccccccccchhhccc--------
Confidence                69999999985442      22233 3789999999988887653    3332467999999765421        


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC---
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN---  221 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~---  221 (331)
                                    .+....|+.+|.+.+.+.+.++.+.   |++++.+.||.+-.+...     .+........+.   
T Consensus       145 --------------~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~-----~~~~~~~~~~~~~~~  205 (255)
T d1gega_         145 --------------NPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWA-----EIDRQVSEAAGKPLG  205 (255)
T ss_dssp             --------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHH-----HHHHHHHHHHTCCTT
T ss_pred             --------------CcccccchhCHHHHHhhHHHHHHHhhhhCcEEEEEecCcccChHHh-----hhhhhhHhhhcccch
Confidence                          1224579999999999999988764   799999999988654210     000000000011   


Q ss_pred             --------CcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          222 --------REEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       222 --------~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                              ..++     ..+...+|+|+++++++....  ..| .+.++|+
T Consensus       206 ~~~~~~~~~~pl-----~R~~~peevA~~v~fL~S~~a~~itG~~i~vDGG  251 (255)
T d1gega_         206 YGTAEFAKRITL-----GRLSEPEDVAACVSYLASPDSDYMTGQSLLIDGG  251 (255)
T ss_dssp             HHHHHHHTTCTT-----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred             hHHHHHHhcCCC-----CCCcCHHHHHHHHHHHhCchhCCccCcEEEecCC
Confidence                    1112     267889999999999997543  344 4556554

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.83  E-value=2.5e-20  Score=154.72  Aligned_cols=219  Identities=19%  Similarity=0.167  Sum_probs=152.5

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      +|.+|||||++.||.++++.|+++|++|++++|+.     +..+. .+.+.+   ...++.++++|+.|+++++++++  
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~-----~~l~~~~~~l~~---~g~~~~~~~~Dvs~~~~v~~~~~~~   73 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGE-----EGLRTTLKELRE---AGVEADGRTCDVRSVPEIEALVAAV   73 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHHh---cCCcEEEEEeecCCHHHHHHHHHHH
Confidence            46789999999999999999999999999999986     22222 122222   23578899999999998887764  


Q ss_pred             -----CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHh------cCCccEEEEecccceeecCCCCC
Q 020104           82 -----GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLK------SGTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~------~~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                           ++|++||+||....      ..+++ +..+++|+.++..+.+++..      .+ ..++|++||......     
T Consensus        74 ~~~~g~iDilVnnAG~~~~~~~~~~~~e~~-~~~~~vNl~g~~~~~~~~~p~~~~~~~~-~g~Ii~i~S~~~~~~-----  146 (257)
T d2rhca1          74 VERYGPVDVLVNNAGRPGGGATAELADELW-LDVVETNLTGVFRVTKQVLKAGGMLERG-TGRIVNIASTGGKQG-----  146 (257)
T ss_dssp             HHHTCSCSEEEECCCCCCCSCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHTTTSHHHHT-EEEEEEECCGGGTSC-----
T ss_pred             HHHhCCCCEEEecccccCCCChHHcCHHHH-HHHHHHHhhhhhHHHHHHhHHHHHHhcC-Ccccccccccccccc-----
Confidence                 58999999986442      22234 38899999999999998753      23 468999999765421     


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCC-------CCccHHHH
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPK-------FAGSVRSS  214 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~-------~~~~~~~~  214 (331)
                                       .+....|+.+|.+.+.+.+.++.+.   +++++.+.||.+-.+.....       ........
T Consensus       147 -----------------~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~e~  209 (257)
T d2rhca1         147 -----------------VVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEA  209 (257)
T ss_dssp             -----------------CTTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSBCSHHHHHHHHHHHHHTTCCHHHH
T ss_pred             -----------------cccchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCHHHHHHHhhhhhhcccChHHH
Confidence                             1124579999999999999999875   69999999999865421000       00000111


Q ss_pred             HHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          215 LALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                      ...+.. ..++     ..+...+|+|+++++++....  ..| .+.++|+
T Consensus       210 ~~~~~~-~~Pl-----gR~~~pedia~~v~fL~S~~s~~itG~~i~vDGG  253 (257)
T d2rhca1         210 FDRITA-RVPI-----GRYVQPSEVAEMVAYLIGPGAAAVTAQALNVCGG  253 (257)
T ss_dssp             HHHHHT-TSTT-----SSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred             HHHHHh-cCCC-----CCCcCHHHHHHHHHHHhCchhcCCcCceEEECcC
Confidence            111111 1222     267899999999999997543  344 4556554

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.83  E-value=3.1e-20  Score=154.00  Aligned_cols=216  Identities=16%  Similarity=0.166  Sum_probs=138.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      ++|++|||||++.||.++++.|++.|++|++++|+.     +..+.. +.+.   ....++..+.+|+.+++++.++++ 
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~-----~~l~~~~~~~~---~~~~~~~~~~~Dv~~~~~v~~~~~~   78 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNE-----YELNECLSKWQ---KKGFQVTGSVCDASLRPEREKLMQT   78 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHH---HTTCCEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHH---hcCCceEEEeccCCCHHHHHHHHHH
Confidence            468999999999999999999999999999999987     222221 2111   123578999999999987776653 


Q ss_pred             -------CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCC
Q 020104           82 -------GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 -------~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~  144 (331)
                             .+|++||+||....      ..+++. ..+++|+.++..+.+++.    +.+ -.++|++||.......    
T Consensus        79 ~~~~~~g~idilvnnAG~~~~~~~~~~~~~~~~-~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Iv~isS~~~~~~~----  152 (259)
T d1xq1a_          79 VSSMFGGKLDILINNLGAIRSKPTLDYTAEDFS-FHISTNLESAYHLSQLAHPLLKASG-CGNIIFMSSIAGVVSA----  152 (259)
T ss_dssp             HHHHHTTCCSEEEEECCC------CCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHS-SCEEEEEC------------
T ss_pred             HHHHhCCCcccccccccccCCCchhhCCHHHHH-HHHHHHhhhheeeehhhhhcccccc-cccccccccccccccc----
Confidence                   38999999985441      222344 789999999888887654    344 5699999997654211    


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                                        +....|+.+|.+.+.+.+.++.+.   +++++.+-||.+..+.........   ..... ..
T Consensus       153 ------------------~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~V~PG~i~T~~~~~~~~~~---~~~~~-~~  210 (259)
T d1xq1a_         153 ------------------SVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVYDDE---FKKVV-IS  210 (259)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC----------------------
T ss_pred             ------------------cccccccccccchhhhhHHHHHHhcccCeEEEEeccCcccCHHhhhhchHH---HHHHH-Hh
Confidence                              123479999999999999888765   799999999999766432211100   00000 01


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEec
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSS  260 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~  260 (331)
                      ..++     ..+...+|+|.++++++....  ..| .+.++|
T Consensus       211 ~~pl-----~R~~~pedvA~~v~fL~S~~s~~iTG~~i~vDG  247 (259)
T d1xq1a_         211 RKPL-----GRFGEPEEVSSLVAFLCMPAASYITGQTICVDG  247 (259)
T ss_dssp             ------------CCGGGGHHHHHHHTSGGGTTCCSCEEECCC
T ss_pred             CCCC-----CCCcCHHHHHHHHHHHhCchhcCCcCcEEEeCC
Confidence            1112     256788999999999996543  344 444544

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.6e-20  Score=155.86  Aligned_cols=222  Identities=14%  Similarity=0.120  Sum_probs=150.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccC-CC-CCCCcEEEEeCCCCCCccHHHHh
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKN-LP-GASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~-~~-~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      .+|++|||||++.||.++++.|++.|++|++++|+.     +..+. .+.+.. .. ....++..+.+|+.|++++.+++
T Consensus        11 ~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~-----~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~   85 (297)
T d1yxma1          11 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKL-----ERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLV   85 (297)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHH
Confidence            468999999999999999999999999999999987     22221 111211 11 12357889999999999888776


Q ss_pred             c-------CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCC
Q 020104           81 A-------GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        81 ~-------~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~  143 (331)
                      +       ++|++||+|+....      ..+++. ..+++|+.++..+.+++..    .+ ..++|++||.....     
T Consensus        86 ~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~-~~~~vNl~g~~~~~~~~~~~m~~~~-~g~Ii~~ss~~~~~-----  158 (297)
T d1yxma1          86 KSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWH-AVLETNLTGTFYMCKAVYSSWMKEH-GGSIVNIIVPTKAG-----  158 (297)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHH-HHHHHHTHHHHHHHHHHHHHTHHHH-CEEEEEECCCCTTC-----
T ss_pred             HHHHHHhCCeEEEEeeccccccCchhhhhhhhhh-hhhcccccchhhHHHHHHHhhcccc-cccccccccccccc-----
Confidence            4       68999999985431      222343 7899999999888887653    33 35788877643221     


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhC
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILG  220 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~  220 (331)
                                        .+....|+.+|.+.+.+.+.++.+.   +++++.+.||.+..+.........-........ 
T Consensus       159 ------------------~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~-  219 (297)
T d1yxma1         159 ------------------FPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSF-  219 (297)
T ss_dssp             ------------------CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGG-
T ss_pred             ------------------ccccccchhHHHHHHHHHHHHHHHhcccCceEEEeeeCcCcCcchhhhccccCHHHHHHHH-
Confidence                              1124579999999999999998775   799999999999776422111110000000000 


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                      ...++     ..+...+|+|.++++++....  ..| .+.++|+
T Consensus       220 ~~~pl-----gR~g~pedvA~~v~fL~Sd~s~~iTG~~i~VDGG  258 (297)
T d1yxma1         220 QKIPA-----KRIGVPEEVSSVVCFLLSPAASFITGQSVDVDGG  258 (297)
T ss_dssp             GGSTT-----SSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             hcCCC-----CCCcCHHHHHHHHHHHhCchhcCcCCcEEEeCcC
Confidence            00111     257789999999999997543  344 5567654

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=99.82  E-value=3.8e-20  Score=152.11  Aligned_cols=215  Identities=16%  Similarity=0.159  Sum_probs=147.7

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc----
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA----   81 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----   81 (331)
                      +.||||||++.||+++++.|+++|++|++.+++..    +..+.+...  +.....++.++.+|+.|++++.++++    
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~----~~~~~~~~~--~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~   75 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSA----KAAEEVSKQ--IEAYGGQAITFGGDVSKEADVEAMMKTAID   75 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH----HHHHHHHHH--HHHHTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCH----HHHHHHHHH--HHHcCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence            47899999999999999999999999998765441    222222111  11112468889999999998887764    


Q ss_pred             ---CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCccc
Q 020104           82 ---GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        82 ---~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                         ++|++||+|+....      ..+++. ..+++|+.++..+.+++.    +.+ -.++|++||......         
T Consensus        76 ~~g~iDiLVnnAg~~~~~~~~~~~~~~~~-~~~~vNl~~~~~~~~~~~~~m~~~~-~G~IVnisS~~~~~~---------  144 (244)
T d1edoa_          76 AWGTIDVVVNNAGITRDTLLIRMKKSQWD-EVIDLNLTGVFLCTQAATKIMMKKR-KGRIINIASVVGLIG---------  144 (244)
T ss_dssp             HSSCCSEEEECCCCCCCCCGGGCCHHHHH-HHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCTHHHHC---------
T ss_pred             HcCCCCccccccccccccchhccchHHHH-HHHhhhhhhHHHHHHHHHHHHHHcC-CcEEEEEcChhhcCC---------
Confidence               68999999986542      222343 789999999888777654    444 579999999775521         


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCccc
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEY  225 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  225 (331)
                                   .+....|+.+|.+.+.+.+.++.++   +++++.+.||.+-.+....    ........... ..++
T Consensus       145 -------------~~~~~~Y~asKaal~~ltk~lA~el~~~gIrvN~I~PG~i~T~~~~~----~~~~~~~~~~~-~~pl  206 (244)
T d1edoa_         145 -------------NIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAK----LGEDMEKKILG-TIPL  206 (244)
T ss_dssp             -------------CTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHT----TCHHHHHHHHT-SCTT
T ss_pred             -------------CCCCHHHHHHHHHHHHChHHHHHHHhhhCcEEEEEecceeccHHHHH----hhHHHHHHHHh-cCCC
Confidence                         1124579999999999999988775   8999999999886542111    11111222221 1222


Q ss_pred             ccCCCccceeHHHHHHHHHHhhcCCC---CCc-eEEEec
Q 020104          226 GFLLNTSMVHVDDVARAHIFLLEYPD---AKG-RYICSS  260 (331)
Q Consensus       226 ~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~-~~~~~~  260 (331)
                      +     .+...+|+|+++.+++..+.   ..| .+.++|
T Consensus       207 ~-----R~~~p~dvA~~v~fLa~S~~a~~itG~~i~vdG  240 (244)
T d1edoa_         207 G-----RTGQPENVAGLVEFLALSPAASYITGQAFTIDG  240 (244)
T ss_dssp             C-----SCBCHHHHHHHHHHHHHCSGGGGCCSCEEEEST
T ss_pred             C-----CCcCHHHHHHHHHHHHCCchhcCCcCCeEEeCC
Confidence            2     67889999999999864332   344 445654

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=99.82  E-value=6.8e-20  Score=150.35  Aligned_cols=214  Identities=21%  Similarity=0.190  Sum_probs=148.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|++|||||++.||..+++.|+++|++|+++.|+.     +..+..  ..++   ..++.++++|+.+++++.++++  
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~-----~~~~~~--~~~~---~~~~~~~~~Dls~~~~i~~~~~~i   73 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREE-----RLLAEA--VAAL---EAEAIAVVADVSDPKAVEAVFAEA   73 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHH--HHTC---CSSEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHH--HHHc---CCceEEEEecCCCHHHHHHHHHHH
Confidence            468999999999999999999999999999999987     222211  1122   2578889999999998877664  


Q ss_pred             -----CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHhcCC-ccEEEEecccceeecCCCCCCcccC
Q 020104           82 -----GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLKSGT-VKRVVYTSSNAAVFYNDKDVDMMDE  149 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~E  149 (331)
                           ++|++||+|+....      ..+++ +..+++|+.++..+.+++...-. -+.++.+||.+...           
T Consensus        74 ~~~~g~iDiLinnAg~~~~~~~~~~~~~~~-~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~-----------  141 (241)
T d2a4ka1          74 LEEFGRLHGVAHFAGVAHSALSWNLPLEAW-EKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLG-----------  141 (241)
T ss_dssp             HHHHSCCCEEEEGGGGTTTTC----CHHHH-HHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCC-----------
T ss_pred             HHHhCCccEeccccccccccchhhhhcccc-ccccccccccccccccccccccccccceeecccccccc-----------
Confidence                 59999999985431      12223 47899999999999998776532 23445444433211           


Q ss_pred             CCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccc
Q 020104          150 TFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYG  226 (331)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (331)
                                  .+....|+.+|.+.+.+.+.++.+.   +++++.+.||.+-.+....    ............ .+.+
T Consensus       142 ------------~~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~----~~~~~~~~~~~~-~p~~  204 (241)
T d2a4ka1         142 ------------AFGLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAG----LPPWAWEQEVGA-SPLG  204 (241)
T ss_dssp             ------------HHHHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTT----SCHHHHHHHHHT-STTC
T ss_pred             ------------ccCccccchhhHHHHHHHHHHHHHHhHhCCEEeeeccCcCCCHHHHh----hhHhHHHHHHhC-CCCC
Confidence                        0113479999999999999998876   6999999999996553221    111122222111 2222


Q ss_pred             cCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          227 FLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       227 ~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                           .+...+|+|+++.+++....  ..| .+.++|+
T Consensus       205 -----r~~~p~dva~~v~fL~S~~s~~itG~~i~vDGG  237 (241)
T d2a4ka1         205 -----RAGRPEEVAQAALFLLSEESAYITGQALYVDGG  237 (241)
T ss_dssp             -----SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             -----CCcCHHHHHHHHHHHhcchhCCCcCceEEeCCC
Confidence                 67799999999999997543  345 4456543

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.2e-19  Score=150.16  Aligned_cols=219  Identities=15%  Similarity=0.065  Sum_probs=147.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|++|||||++.||.++++.|+++|++|++++|+.     +..+.. ..+.+. ....++.++.+|+.|+++++++++ 
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~-----~~~~~~~~~l~~~-~~~~~~~~~~~Dv~~~~~v~~~~~~   75 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNL-----EAGVQCKAALHEQ-FEPQKTLFIQCDVADQQQLRDTFRK   75 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHTTT-SCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHHHh-cCCCcEEEEEeecCCHHHHHHHHHH
Confidence            368999999999999999999999999999999987     222222 222111 112468899999999998887764 


Q ss_pred             ------CccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHh----cC--CccEEEEecccceeecCCCCCCcccC
Q 020104           82 ------GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLK----SG--TVKRVVYTSSNAAVFYNDKDVDMMDE  149 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~~~v~~SS~~~~~~~~~~~~~~~E  149 (331)
                            ++|++||+|+....  .++. +.+++|+.++..+.+++..    ..  .-.++|++||...+..          
T Consensus        76 ~~~~~G~iDilVnnAg~~~~--~~~~-~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~~----------  142 (254)
T d2gdza1          76 VVDHFGRLDILVNNAGVNNE--KNWE-KTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMP----------  142 (254)
T ss_dssp             HHHHHSCCCEEEECCCCCCS--SSHH-HHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSC----------
T ss_pred             HHHHcCCcCeeccccccccc--ccch-heeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhccC----------
Confidence                  68999999997543  3555 8999999888777766643    21  1247999999765421          


Q ss_pred             CCCCChhhhhhcCCCCchhHhhHHHHHHHHHH--HHH---HcCCcEEEeccCceeCCCCCCCCC-----ccHHHHHHHHh
Q 020104          150 TFWSDVDYIRKLDSWGKSYAISKTLTERAALE--FAE---EHGLDLVTLIPSMVVGPFICPKFA-----GSVRSSLALIL  219 (331)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~--~~~---~~~~~~~ilRp~~v~G~~~~~~~~-----~~~~~~~~~~~  219 (331)
                                  .+....|+.+|.+.+.+.+.  ++.   .++++++.+.||.+-.+.......     .... ....+.
T Consensus       143 ------------~~~~~~Y~asKaal~~ltrs~ala~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~-~~~~~~  209 (254)
T d2gdza1         143 ------------VAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIE-YKDHIK  209 (254)
T ss_dssp             ------------CTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGG-GHHHHH
T ss_pred             ------------CCCccchHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEcCCCCChhhhhccccccccccHH-HHHHHH
Confidence                        11245799999999988874  332   358999999999886542110000     0000 000000


Q ss_pred             CCCcccccCCCccceeHHHHHHHHHHhhcCCCCCce-EEEec
Q 020104          220 GNREEYGFLLNTSMVHVDDVARAHIFLLEYPDAKGR-YICSS  260 (331)
Q Consensus       220 ~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~-~~~~~  260 (331)
                       ...++     ..+...+|+|+++++++.++...|. ..++|
T Consensus       210 -~~~p~-----~r~~~pedvA~~v~fL~s~~~itG~~i~VdG  245 (254)
T d2gdza1         210 -DMIKY-----YGILDPPLIANGLITLIEDDALNGAIMKITT  245 (254)
T ss_dssp             -HHHHH-----HCCBCHHHHHHHHHHHHHCTTCSSCEEEEET
T ss_pred             -hcCCC-----CCCcCHHHHHHHHHHHHcCCCCCCCEEEECC
Confidence             00011     1467889999999999987766564 45654

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=9.9e-20  Score=150.86  Aligned_cols=211  Identities=17%  Similarity=0.144  Sum_probs=142.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      ++|.+|||||++.||.++++.|+++|++|++++|+.     +..+.+ +.+... ....++.++.+|+.+++++.++++ 
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~-----~~l~~~~~~l~~~-~~~~~~~~~~~Dls~~~~v~~~v~~   82 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTV-----GNIEELAAECKSA-GYPGTLIPYRCDLSNEEDILSMFSA   82 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHHT-TCSSEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHHhc-CCCceEEEEEccCCCHHHHHHHHHH
Confidence            467899999999999999999999999999999987     222222 112221 122468889999999998887664 


Q ss_pred             ------CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHH----hcC-CccEEEEecccceeecCCCCC
Q 020104           82 ------GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCL----KSG-TVKRVVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~-~~~~~v~~SS~~~~~~~~~~~  144 (331)
                            ++|++||+|+....      +.+++ +..+++|+.++..+.+++.    +.+ .-.++|++||...+... +  
T Consensus        83 ~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~-~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~-p--  158 (257)
T d1xg5a_          83 IRSQHSGVDICINNAGLARPDTLLSGSTSGW-KDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVL-P--  158 (257)
T ss_dssp             HHHHHCCCSEEEECCCCCCCCCTTTCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCC-S--
T ss_pred             HHHhcCCCCEEEecccccCCCccccccHHHH-HhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCCC-C--
Confidence                  68999999986442      12223 4788899888877766653    332 13699999997643100 0  


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH-----cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHh
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE-----HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALIL  219 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~-----~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~  219 (331)
                                       ......|+.+|...+.+.+.++.+     ++++++.+.||.+-.+................  
T Consensus       159 -----------------~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t~~~~~~~~~~~~~~~~~--  219 (257)
T d1xg5a_         159 -----------------LSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAAT--  219 (257)
T ss_dssp             -----------------CGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTTCHHHHHHH--
T ss_pred             -----------------CcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCChhhhhcChhhHHHHHhc--
Confidence                             011236999999999999888754     47999999998775442110000111111110  


Q ss_pred             CCCcccccCCCccceeHHHHHHHHHHhhcCCC
Q 020104          220 GNREEYGFLLNTSMVHVDDVARAHIFLLEYPD  251 (331)
Q Consensus       220 ~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~  251 (331)
                         ...     ..++..+|+|+++++++..+.
T Consensus       220 ---~~~-----~r~~~pedvA~~v~fL~s~~a  243 (257)
T d1xg5a_         220 ---YEQ-----MKCLKPEDVAEAVIYVLSTPA  243 (257)
T ss_dssp             ---HC--------CBCHHHHHHHHHHHHHSCT
T ss_pred             ---CCC-----CCCcCHHHHHHHHHHHhCChh
Confidence               111     267899999999999998764

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.82  E-value=2.4e-19  Score=146.51  Aligned_cols=209  Identities=14%  Similarity=0.072  Sum_probs=144.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCC-ccHHHHhcC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHP-DGFDAAIAG   82 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~   82 (331)
                      ++|++|||||++.||+++++.|+++|++|++++|+.        +.++.        .+.+++.+|+.+. +.+.+.+.+
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~--------~~l~~--------~~~~~~~~Dv~~~~~~~~~~~g~   66 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE--------ELLKR--------SGHRYVVCDLRKDLDLLFEKVKE   66 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH--------HHHHH--------TCSEEEECCTTTCHHHHHHHSCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH--------HHHHh--------cCCcEEEcchHHHHHHHHHHhCC
Confidence            468999999999999999999999999999999986        22221        2346788999764 334444558


Q ss_pred             ccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCcccCCCC
Q 020104           83 CTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDMMDETFW  152 (331)
Q Consensus        83 ~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~  152 (331)
                      +|++||+||....      ..+++. ..+++|+.++..+.+++.    +.+ ..++|++||......             
T Consensus        67 iD~lVnnAG~~~~~~~~~~~~~~~~-~~~~~n~~~~~~~~~~~~~~m~~~~-~G~ii~i~S~~~~~~-------------  131 (234)
T d1o5ia_          67 VDILVLNAGGPKAGFFDELTNEDFK-EAIDSLFLNMIKIVRNYLPAMKEKG-WGRIVAITSFSVISP-------------  131 (234)
T ss_dssp             CSEEEECCCCCCCBCGGGCCHHHHH-HHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSC-------------
T ss_pred             CcEEEecccccCCcchhhhhhHHHH-HHhhhhhhhhhhhhhcccccccccc-ccccccccccccccc-------------
Confidence            9999999985442      222333 778899998877777654    444 468999999765421             


Q ss_pred             CChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCC
Q 020104          153 SDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLL  229 (331)
Q Consensus       153 ~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (331)
                               .+....|+.+|.+.+.+.+.++.+.   +++++.+.||.+..+........   ....... ...+++   
T Consensus       132 ---------~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~~~~---~~~~~~~-~~~pl~---  195 (234)
T d1o5ia_         132 ---------IENLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELLSE---EKKKQVE-SQIPMR---  195 (234)
T ss_dssp             ---------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHSCH---HHHHHHH-TTSTTS---
T ss_pred             ---------ccccccchhHHHHHHHHHHHHHHHhcccCeEEeecccCccchhhhhhhcCH---HHHHHHH-hcCCCC---
Confidence                     1224579999999999999888765   79999999999876642211111   1111111 112222   


Q ss_pred             CccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          230 NTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       230 ~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                        .+...+|+|.++.+++....  ..| .+.++|.
T Consensus       196 --R~~~pediA~~v~fL~S~~s~~itG~~i~vDGG  228 (234)
T d1o5ia_         196 --RMAKPEEIASVVAFLCSEKASYLTGQTIVVDGG  228 (234)
T ss_dssp             --SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             --CCcCHHHHHHHHHHHhChhhcCCcCcEEEECcc
Confidence              67899999999999997543  344 4556554

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=99.82  E-value=7.9e-20  Score=153.15  Aligned_cols=221  Identities=18%  Similarity=0.205  Sum_probs=150.3

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      |...+|++|||||++.||+++++.|+++|++|++++|+.     +..+.+..  +.   ..++..+.+|+.+.+++.+++
T Consensus         1 M~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~-----~~l~~~~~--~~---~~~~~~~~~Dv~~~~~~~~~~   70 (276)
T d1bdba_           1 MKLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSA-----ERLAELET--DH---GDNVLGIVGDVRSLEDQKQAA   70 (276)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHH--HH---GGGEEEEECCTTCHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHH--Hc---CCCeeEEecccccHHHHHHHH
Confidence            777789999999999999999999999999999999987     22222211  11   246889999999998887776


Q ss_pred             c-------CccEEEEecccCCCC-------CCC---hhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeec
Q 020104           81 A-------GCTGVLHVATPVDFE-------DKE---PEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFY  139 (331)
Q Consensus        81 ~-------~~d~Vih~a~~~~~~-------~~~---~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~  139 (331)
                      +       ++|++||+|+.....       .+.   ..+..+++|+.++..+.+++.    +.+  .++|++||..... 
T Consensus        71 ~~~~~~~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~--g~iI~i~S~~~~~-  147 (276)
T d1bdba_          71 SRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR--GNVIFTISNAGFY-  147 (276)
T ss_dssp             HHHHHHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCGGGTS-
T ss_pred             HHHHHHhCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC--CCceeeeechhcc-
Confidence            4       689999999864321       111   123788999999888777664    333  5888888865442 


Q ss_pred             CCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc--CCcEEEeccCceeCCCCCCCCCccHHH----
Q 020104          140 NDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH--GLDLVTLIPSMVVGPFICPKFAGSVRS----  213 (331)
Q Consensus       140 ~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~----  213 (331)
                      +                     .+....|+.+|.+.+.+.+.++.+.  +++++.+.||.|-.+-..+........    
T Consensus       148 ~---------------------~~~~~~Y~asKaal~~ltr~lA~ela~~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~  206 (276)
T d1bdba_         148 P---------------------NGGGPLYTAAKHAIVGLVRELAFELAPYVRVNGVGSGGINSDLRGPSSLGMGSKAIST  206 (276)
T ss_dssp             T---------------------TSSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCSCCCCCGGGC--------
T ss_pred             C---------------------CCCCchHHHHHHHHHHHHHHHHHHhhcceEEcccCCCCEecCcCCccchhhhhhccCc
Confidence            1                     0123479999999999999888765  489999999998765322211100000    


Q ss_pred             --HHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCC---CCCc-eEEEecc
Q 020104          214 --SLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYP---DAKG-RYICSSH  261 (331)
Q Consensus       214 --~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~---~~~~-~~~~~~~  261 (331)
                        ..... ....+++     .+...+|+|.++++++..+   ...| .++++|.
T Consensus       207 ~~~~~~~-~~~~Plg-----R~g~peeva~~v~fL~S~~~a~~itG~~i~VDGG  254 (276)
T d1bdba_         207 VPLADML-KSVLPIG-----RMPEVEEYTGAYVFFATRGDAAPATGALLNYDGG  254 (276)
T ss_dssp             -CHHHHH-TTTCTTS-----SCCCGGGGSHHHHHHHCHHHHTTCSSCEEEESSS
T ss_pred             HHHHHHH-HhcCCCC-----CCcCHHHHHHHHHHHcCCcccCCeeCcEEEECcC
Confidence              11111 1112222     5778999999999988632   2344 5566553

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=99.81  E-value=5.1e-20  Score=153.09  Aligned_cols=228  Identities=16%  Similarity=0.154  Sum_probs=152.0

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHH
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      |+-++|++|||||++.||.++++.|+++|++|++++|+.     +..... +.+.+.  ...++.++.+|+.|++++.++
T Consensus         5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~-----~~~~~~~~~~~~~--~g~~~~~~~~Dv~~~~~v~~~   77 (260)
T d1h5qa_           5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSA-----ADAVEVTEKVGKE--FGVKTKAYQCDVSNTDIVTKT   77 (260)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC-----TTHHHHHHHHHHH--HTCCEEEEECCTTCHHHHHHH
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHHHH--hCCceEEEEccCCCHHHHHHH
Confidence            455689999999999999999999999999999999988     232221 111111  124688999999999988877


Q ss_pred             hc-------CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCC
Q 020104           80 IA-------GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDK  142 (331)
Q Consensus        80 ~~-------~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~  142 (331)
                      ++       ++|++||+|+....      +.+++. ..+++|+.++..+.+++..    .+...+++..||.......  
T Consensus        78 ~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~-~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~--  154 (260)
T d1h5qa_          78 IQQIDADLGPISGLIANAGVSVVKPATELTHEDFA-FVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIIN--  154 (260)
T ss_dssp             HHHHHHHSCSEEEEEECCCCCCCSCGGGCCHHHHH-HHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC--
T ss_pred             HHHHHHHhCCCcEecccccccccCCHHHhcccccc-ccccccccchhhhhhhhcccccccccceEEEEeecccccccc--
Confidence            64       68999999985432      222333 7889999988877775542    3324566666665433100  


Q ss_pred             CCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHh
Q 020104          143 DVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALIL  219 (331)
Q Consensus       143 ~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~  219 (331)
                       ...+.            ..+....|+.+|.+.+.+.+.++.+.   +++++.+.||.+-.+....    ..........
T Consensus       155 -~~~~~------------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~----~~~~~~~~~~  217 (260)
T d1h5qa_         155 -QSSLN------------GSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAH----MDKKIRDHQA  217 (260)
T ss_dssp             -EEETT------------EECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGG----SCHHHHHHHH
T ss_pred             -ccccc------------cCccccchhhhhhhHHHHHHHHHHHhchhCeEEeecCCCcccCcchhc----cCHHHHHHHH
Confidence             00000            01224579999999999999888764   7999999999997653221    1111222111


Q ss_pred             CCCcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          220 GNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       220 ~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                      . ..+++     .+...+|+|.++++++....  ..| .+.++|+
T Consensus       218 ~-~~pl~-----R~g~pedvA~~v~fL~S~~s~~itG~~i~VDGG  256 (260)
T d1h5qa_         218 S-NIPLN-----RFAQPEEMTGQAILLLSDHATYMTGGEYFIDGG  256 (260)
T ss_dssp             H-TCTTS-----SCBCGGGGHHHHHHHHSGGGTTCCSCEEEECTT
T ss_pred             h-cCCCC-----CCcCHHHHHHHHHHHhcchhCCCcCceEEECCC
Confidence            1 12222     57789999999999997543  344 4567654

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.81  E-value=1.9e-19  Score=149.96  Aligned_cols=225  Identities=16%  Similarity=0.136  Sum_probs=145.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      ++|.+|||||++.||++++++|+++|++|++++|+.     +..+.. +.+........++.++.+|+.|.+++.++++ 
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~-----~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~   78 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHA-----ERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILST   78 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHH
Confidence            468999999999999999999999999999999987     222221 2222222223468999999999998887764 


Q ss_pred             ------CccEEEEecccCCC----------CCCChhhHHHHHHHHHHHHHHHHHHhc--CCccEEEEecccceeecCCCC
Q 020104           82 ------GCTGVLHVATPVDF----------EDKEPEEVITQRAINGTLGILKSCLKS--GTVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~----------~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~~v~~SS~~~~~~~~~~  143 (331)
                            ++|++||+||....          +.+++. ..+++|+.++..+.+++...  ....++|+++|+.....+   
T Consensus        79 ~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~-~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~S~~~~~~~---  154 (264)
T d1spxa_          79 TLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYD-ATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGLHA---  154 (264)
T ss_dssp             HHHHHSCCCEEEECCC-------------CCHHHHH-HHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSSSC---
T ss_pred             HHHHhCCCCEeecccccccCCccccccccCCHHHHH-HHHHHhHHHHHHHHhhhCCccccccCcceeeeeecccccc---
Confidence                  68999999985421          111233 78889999988887766542  002466666664421101   


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCC-----CccHHHHH
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKF-----AGSVRSSL  215 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~-----~~~~~~~~  215 (331)
                                        .+....|+.+|.+.+.+.+.++.+.   +++++.+.||.+-.+......     ........
T Consensus       155 ------------------~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~  216 (264)
T d1spxa_         155 ------------------TPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTM  216 (264)
T ss_dssp             ------------------CTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHH
T ss_pred             ------------------CCCchhhhhhhhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCcchhccCCcHHHHHHHHHHH
Confidence                              1113479999999999999888765   799999999999765322110     00001111


Q ss_pred             HHHhCCCcccccCCCccceeHHHHHHHHHHhhcCC---CCCc-eEEEecc
Q 020104          216 ALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYP---DAKG-RYICSSH  261 (331)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~---~~~~-~~~~~~~  261 (331)
                      .... ...+++     .+...+|+|+++++++..+   ...| .+.++|+
T Consensus       217 ~~~~-~~~Pl~-----R~g~pedvA~~v~fL~S~~~s~~itG~~i~vDGG  260 (264)
T d1spxa_         217 ATMK-ECVPAG-----VMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGG  260 (264)
T ss_dssp             HHHH-HHCTTS-----SCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTT
T ss_pred             HHHH-hcCCCC-----CCcCHHHHHHHHHHHhCCcccCCccCceEEeCCC
Confidence            1111 111222     6778999999999999743   2344 4566553

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=99.81  E-value=5.3e-19  Score=148.00  Aligned_cols=226  Identities=14%  Similarity=0.025  Sum_probs=150.9

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      ..+|++|||||++.||.++++.|+++|++|++++|+..    +..+....  ++.....++.++.+|+.|++++.++++ 
T Consensus        16 L~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~----~~~~~~~~--~~~~~g~~~~~~~~D~~~~~~v~~~~~~   89 (272)
T d1g0oa_          16 LEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANST----ESAEEVVA--AIKKNGSDAACVKANVGVVEDIVRMFEE   89 (272)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH----HHHHHHHH--HHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch----HHHHHHHH--HHHhhCCceeeEeCCCCCHHHHHHHHHH
Confidence            34689999999999999999999999999999988762    11111111  111123568899999999988887764 


Q ss_pred             ------CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCCCCccc
Q 020104           82 ------GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                            ++|++||+++....      ...++ +..+++|+.++..+++++...= .-.+.++++|.......        
T Consensus        90 ~~~~~g~idilV~nag~~~~~~~~~~~~~~~-~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~~~~--------  160 (272)
T d1g0oa_          90 AVKIFGKLDIVCSNSGVVSFGHVKDVTPEEF-DRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKA--------  160 (272)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCSS--------
T ss_pred             HHHHhCCCCccccccccchhhhhhhhhhhHH-HHHhhhccceeeeecccccccccccccccccccccccccc--------
Confidence                  68999999986542      12223 3788899999999999887641 13477788775432100        


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCC--------CCCCccHHHHHHH
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFIC--------PKFAGSVRSSLAL  217 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~--------~~~~~~~~~~~~~  217 (331)
                                   .+....|+.+|.+.+.+++.++.++   +++++.+.||.+-.+...        .............
T Consensus       161 -------------~~~~~~Y~asKaal~~ltk~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~  227 (272)
T d1g0oa_         161 -------------VPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEY  227 (272)
T ss_dssp             -------------CSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHH
T ss_pred             -------------ccchhhHHHHHHHHHHHHHHHHHHhchhCeEEEEEccCCcCChHHHHHHHhhhhcccccchHHHHHH
Confidence                         1224579999999999999888764   899999999999654100        0000001111111


Q ss_pred             HhCCCcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          218 ILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       218 ~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                      ......+++     .+...+|+|.++++++....  .+| ...++|+
T Consensus       228 ~~~~~~Plg-----R~~~peevA~~v~fL~s~~s~~itG~~i~vDGG  269 (272)
T d1g0oa_         228 AAVQWSPLR-----RVGLPIDIARVVCFLASNDGGWVTGKVIGIDGG  269 (272)
T ss_dssp             HHHHSCTTC-----SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             HHHccCCCC-----CCcCHHHHHHHHHHHhCchhcCccCceEeECCC
Confidence            111112222     67899999999999997544  345 4456554

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.81  E-value=3.4e-19  Score=145.98  Aligned_cols=195  Identities=13%  Similarity=0.130  Sum_probs=142.0

Q ss_pred             eEEEecCcchhHHHHHHHHHHCCCe-------EEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHGYS-------VTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~-------V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      .||||||++.||+++++.|+++|++       |++.+|+.     +..+....  ++.....++.++.+|++|.+++.++
T Consensus         3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~-----~~l~~~~~--~~~~~g~~~~~~~~Dvt~~~~v~~~   75 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTA-----ADLEKISL--ECRAEGALTDTITADISDMADVRRL   75 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCH-----HHHHHHHH--HHHTTTCEEEEEECCTTSHHHHHHH
T ss_pred             EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCH-----HHHHHHHH--HHHhcCCcEEEEEecCCCHHHHHHH
Confidence            4899999999999999999999987       88888887     22222211  1122235688899999999988877


Q ss_pred             hc-------CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCC
Q 020104           80 IA-------GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDK  142 (331)
Q Consensus        80 ~~-------~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~  142 (331)
                      ++       ++|++||+|+....      ..+++ +..+++|+.++..+.+++.    +.+ -.++|++||...+..   
T Consensus        76 ~~~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~-~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Ii~isS~~~~~~---  150 (240)
T d2bd0a1          76 TTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDF-DYTMNTNLKGTFFLTQALFALMERQH-SGHIFFITSVAATKA---  150 (240)
T ss_dssp             HHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSC---
T ss_pred             HHHHHHHcCCcceeecccccccCCccccCCHHHH-hhcCCEeehHHHHHHHHHhHHHHhcC-CCceEEEechhhcCC---
Confidence            64       58999999986542      22233 4789999999888777664    444 469999999775521   


Q ss_pred             CCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHh
Q 020104          143 DVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALIL  219 (331)
Q Consensus       143 ~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~  219 (331)
                                         .+....|+.+|.+.+.+.+.++.+.   +++++.+.||.+-.+.... ..           
T Consensus       151 -------------------~~~~~~Y~asK~al~~lt~~la~el~~~gIrvn~i~PG~v~T~~~~~-~~-----------  199 (240)
T d2bd0a1         151 -------------------FRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGK-VD-----------  199 (240)
T ss_dssp             -------------------CTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCC-CC-----------
T ss_pred             -------------------CCCChHHHHHHHHHHHHHHHHHHHhCcCCeEEEEeeeCcccCchhhh-cC-----------
Confidence                               1124579999999999999887764   7999999999997663211 00           


Q ss_pred             CCCcccccCCCccceeHHHHHHHHHHhhcCCC
Q 020104          220 GNREEYGFLLNTSMVHVDDVARAHIFLLEYPD  251 (331)
Q Consensus       220 ~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~  251 (331)
                             ......+...+|+|+++++++.++.
T Consensus       200 -------~~~~~~~~~PedvA~~v~~l~s~~~  224 (240)
T d2bd0a1         200 -------DEMQALMMMPEDIAAPVVQAYLQPS  224 (240)
T ss_dssp             -------STTGGGSBCHHHHHHHHHHHHTSCT
T ss_pred             -------HhhHhcCCCHHHHHHHHHHHHcCCc
Confidence                   0001245678999999999998764

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=99.81  E-value=3.6e-19  Score=147.91  Aligned_cols=226  Identities=19%  Similarity=0.099  Sum_probs=149.3

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .+|++|||||++.||.++++.|+++|++|++..|+..    ...+....  ++.....++.++.+|+.|.++++++++  
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~----~~~~~~~~--~~~~~g~~~~~~~~D~~~~~~v~~~~~~~   78 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSS----KAAEEVVA--ELKKLGAQGVAIQADISKPSEVVALFDKA   78 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH----HHHHHHHH--HHHHTTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCCh----HHHHHHHH--HHHHcCCCceEecCCCCCHHHHHHHHHHH
Confidence            4689999999999999999999999999998777652    11111111  111123478899999999988887764  


Q ss_pred             -----CccEEEEecccCCCC-----CCChhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCCCCcccCC
Q 020104           82 -----GCTGVLHVATPVDFE-----DKEPEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKDVDMMDET  150 (331)
Q Consensus        82 -----~~d~Vih~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~E~  150 (331)
                           ++|++||+|+.....     ..+..+..+++|+.+...+++++..+- .-.+++.++|......+          
T Consensus        79 ~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~~~~----------  148 (259)
T d1ja9a_          79 VSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMTG----------  148 (259)
T ss_dssp             HHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCCS----------
T ss_pred             HHHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccccccccccC----------
Confidence                 689999999865421     112224788999999988888776531 12466666664322101          


Q ss_pred             CCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCC---------CCCCCccHHHHHHHH
Q 020104          151 FWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFI---------CPKFAGSVRSSLALI  218 (331)
Q Consensus       151 ~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~---------~~~~~~~~~~~~~~~  218 (331)
                                 .+....|+.+|.+.+.+++.++.+.   +++++.|.||.+-.+..         ..........+....
T Consensus       149 -----------~~~~~~Y~asK~al~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (259)
T d1ja9a_         149 -----------IPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGL  217 (259)
T ss_dssp             -----------CCSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHH
T ss_pred             -----------CCCchhHHHHHHHHHHHHHHHHHHHhhcCeEEeccCcCCccChhhhhhhhhhhhhhcccCCHHHHHHHH
Confidence                       0113479999999999999888764   79999999999864310         011111112222222


Q ss_pred             hCCCcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEeccc
Q 020104          219 LGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSHT  262 (331)
Q Consensus       219 ~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~~  262 (331)
                      ... .++     ..+...+|+++++.+++....  ..| .+.++|+.
T Consensus       218 ~~~-~pl-----~R~g~p~eVa~~v~fL~S~~a~~itG~~i~vDGG~  258 (259)
T d1ja9a_         218 ANM-NPL-----KRIGYPADIGRAVSALCQEESEWINGQVIKLTGGG  258 (259)
T ss_dssp             HHT-STT-----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred             HhC-CCC-----CCCcCHHHHHHHHHHHhCchhcCCcCceEEeCCCC
Confidence            111 122     267899999999999998654  344 45566653

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.81  E-value=5.7e-19  Score=147.63  Aligned_cols=224  Identities=17%  Similarity=0.136  Sum_probs=148.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|++|||||++.||+++++.|+++|++|++++|+.     +..+.. +.+.+......++.++.+|+.|++++.++++ 
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~-----~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~   78 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSS-----ERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINS   78 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHH
Confidence            468999999999999999999999999999999987     332222 2222222223468999999999998887764 


Q ss_pred             ------CccEEEEecccCCCCC------C----ChhhHHHHHHHHHHHHHHHHHHhc---CCccEEEEeccc-ceeecCC
Q 020104           82 ------GCTGVLHVATPVDFED------K----EPEEVITQRAINGTLGILKSCLKS---GTVKRVVYTSSN-AAVFYND  141 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~~------~----~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~SS~-~~~~~~~  141 (331)
                            ++|++||+||......      +    ++ +..+++|+.++..+.+++...   + -.++|+++|+ +... + 
T Consensus        79 ~~~~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~-~~~~~vNl~~~~~~~~~~~p~m~~~-~g~iI~~~Ss~a~~~-~-  154 (272)
T d1xkqa_          79 TLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIY-HKTLKLNLQAVIEMTKKVKPHLVAS-KGEIVNVSSIVAGPQ-A-  154 (272)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECCGGGSSS-C-
T ss_pred             HHHHhCCceEEEeCCcccCcccccccchhccHHHH-HHHHHhhhhHHHHHHHhhccccccc-CCccccccchhcccc-C-
Confidence                  6899999998654211      1    13 367889999988888876542   1 2355555553 3221 1 


Q ss_pred             CCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCC-Ccc-HHHHHH
Q 020104          142 KDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKF-AGS-VRSSLA  216 (331)
Q Consensus       142 ~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~-~~~-~~~~~~  216 (331)
                                          .+....|+.+|.+.+.+.+.++.+.   +++++.+.||.|-.+...... ... ......
T Consensus       155 --------------------~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~  214 (272)
T d1xkqa_         155 --------------------QPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYN  214 (272)
T ss_dssp             --------------------CCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHH
T ss_pred             --------------------CCCcchhhhHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcchhhhccCCchHHHHHHHH
Confidence                                1123479999999999999888664   799999999998765321100 101 111111


Q ss_pred             HHh--CCCcccccCCCccceeHHHHHHHHHHhhcCC---CCCc-eEEEecc
Q 020104          217 LIL--GNREEYGFLLNTSMVHVDDVARAHIFLLEYP---DAKG-RYICSSH  261 (331)
Q Consensus       217 ~~~--~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~---~~~~-~~~~~~~  261 (331)
                      ...  ....+++     .+...+|+|+++++++..+   ...| .+.++|+
T Consensus       215 ~~~~~~~~~Plg-----R~g~pediA~~v~fL~S~~as~~iTG~~i~vDGG  260 (272)
T d1xkqa_         215 FMASHKECIPIG-----AAGKPEHIANIILFLADRNLSFYILGQSIVADGG  260 (272)
T ss_dssp             HHHHCTTTCTTS-----SCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTT
T ss_pred             HHHHHhcCCCCC-----CCcCHHHHHHHHHHHhCcchhCCccCeEEEeCcC
Confidence            111  1112232     6789999999999999642   2344 4556543

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.80  E-value=3.5e-19  Score=149.04  Aligned_cols=224  Identities=16%  Similarity=0.106  Sum_probs=150.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|++|||||++.||+++++.|++.|++|++++|+.     +..+.. +.+.+......++..+.+|+.|++++.++++ 
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~-----~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~   77 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNE-----DRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINT   77 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHH
Confidence            468999999999999999999999999999999987     222222 2222222223478999999999998887764 


Q ss_pred             ------CccEEEEecccCCCC--------CCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCC
Q 020104           82 ------GCTGVLHVATPVDFE--------DKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~--------~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~  143 (331)
                            ++|++||+||.....        .+++ +..+++|+.++..+.+++..    .+ -.+++++||..... +   
T Consensus        78 ~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~-~~~~~vNl~~~~~~~~~~~~~m~~~~-~g~ii~~ss~~~~~-~---  151 (274)
T d1xhla_          78 TLAKFGKIDILVNNAGANLADGTANTDQPVELY-QKTFKLNFQAVIEMTQKTKEHLIKTK-GEIVNVSSIVAGPQ-A---  151 (274)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEECCGGGSSS-C---
T ss_pred             HHHHcCCceEEEeecccccccccccccCCHHHH-HHHHhhcccccccccccccccccccc-cccccchhhhhccc-c---
Confidence                  589999999853211        1123 37889999998888877653    33 45778777755331 1   


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCC-CccH-HHHHHHH
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKF-AGSV-RSSLALI  218 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~-~~~~-~~~~~~~  218 (331)
                                        .+....|+.+|.+.+.+.+.++.+.   +++++.+.||.+..+...... .... .......
T Consensus       152 ------------------~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~  213 (274)
T d1xhla_         152 ------------------HSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFI  213 (274)
T ss_dssp             ------------------CTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHH
T ss_pred             ------------------CCCCceehhhhhHHHHHHHHHHHHHhHhCCceeeeccCCCcCchhhhhcccchhhHHHHHHH
Confidence                              1123479999999999999888765   799999999999765321110 0111 1111111


Q ss_pred             h--CCCcccccCCCccceeHHHHHHHHHHhhcCC---CCCc-eEEEecc
Q 020104          219 L--GNREEYGFLLNTSMVHVDDVARAHIFLLEYP---DAKG-RYICSSH  261 (331)
Q Consensus       219 ~--~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~---~~~~-~~~~~~~  261 (331)
                      .  ....+++     .+...+|+|+++++++..+   ...| .+.++|+
T Consensus       214 ~~~~~~iPlg-----R~g~pediA~~v~fL~S~d~s~~itG~~i~vDGG  257 (274)
T d1xhla_         214 GSRKECIPVG-----HCGKPEEIANIIVFLADRNLSSYIIGQSIVADGG  257 (274)
T ss_dssp             HHCTTTCTTS-----SCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTT
T ss_pred             HHHHcCCCCC-----CCcCHHHHHHHHHHHcCCccccCccCcEEEeCcC
Confidence            1  1112232     6789999999999999632   2344 5566553

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.80  E-value=3e-19  Score=148.32  Aligned_cols=218  Identities=16%  Similarity=0.099  Sum_probs=146.3

Q ss_pred             CCceEEEecCcc--hhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGGTG--FIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      .+|++|||||+|  .||++++++|++.|++|++..|+.     ...+.......   ...+..++.+|+.|+++++++++
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~-----~~~~~~~~~~~---~~~~~~~~~~D~~~~~~v~~~~~   78 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE-----RLRPEAEKLAE---ALGGALLFRADVTQDEELDALFA   78 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSG-----GGHHHHHHHHH---HTTCCEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcH-----HHHHHHHHhhh---ccCcccccccccCCHHHHHHHHH
Confidence            568999999998  799999999999999999888875     22222222211   11356789999999988887764


Q ss_pred             -------CccEEEEecccCC----------CCCCChhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCC
Q 020104           82 -------GCTGVLHVATPVD----------FEDKEPEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        82 -------~~d~Vih~a~~~~----------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~  143 (331)
                             ++|++||+|+...          ....++. ..+++|+.++..+++++...- .-.++|++||......    
T Consensus        79 ~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~-~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~~~----  153 (256)
T d1ulua_          79 GVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWL-LALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKV----  153 (256)
T ss_dssp             HHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHH-HHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSB----
T ss_pred             HHHHhcCCceEEEeccccccccccccchhhhhhhhhh-HhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhcCC----
Confidence                   6899999998532          1111232 578899999999988876431 1258999999765421    


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhC
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILG  220 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~  220 (331)
                                        .+....|+.+|.+.+.+.+.++.+.   |++++.+.||.+..+...... .. .........
T Consensus       154 ------------------~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~I~PG~i~t~~~~~~~-~~-~~~~~~~~~  213 (256)
T d1ulua_         154 ------------------VPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIP-GF-TKMYDRVAQ  213 (256)
T ss_dssp             ------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-----------C-HHHHHHHHH
T ss_pred             ------------------CCCchHHHHHHHHHHHHHHHHHHHhcccCCEEeeeccceeeeccccchh-hh-HHHHHHHHh
Confidence                              1224579999999999999988765   799999999998776433211 11 111111111


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEec
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSS  260 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~  260 (331)
                       ..+++     .+...+|+|.++++++....  ..| .+.++|
T Consensus       214 -~~pl~-----R~~~pedvA~~v~fL~S~~s~~itG~~i~VDG  250 (256)
T d1ulua_         214 -TAPLR-----RNITQEEVGNLGLFLLSPLASGITGEVVYVDA  250 (256)
T ss_dssp             -HSTTS-----SCCCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             -cCCCC-----CCcCHHHHHHHHHHHhCchhCCccCCeEEECc
Confidence             11222     57789999999999997543  344 455654

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.5e-18  Score=142.57  Aligned_cols=219  Identities=16%  Similarity=0.157  Sum_probs=150.8

Q ss_pred             CC-CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH
Q 020104            1 ME-EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         1 M~-~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      |. -.+|++|||||++.||+++++.|+++|++|++++|++        ++++.+.+.    .+++...+|+.+.+.+...
T Consensus         1 m~~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~--------~~l~~~~~~----~~~~~~~~d~~~~~~~~~~   68 (245)
T d2ag5a1           1 MGRLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINE--------SKLQELEKY----PGIQTRVLDVTKKKQIDQF   68 (245)
T ss_dssp             CCTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH--------HHHGGGGGS----TTEEEEECCTTCHHHHHHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH--------HHHHHHHhc----cCCceeeeecccccccccc
Confidence            44 3568999999999999999999999999999999987        222322222    5678888998877666555


Q ss_pred             h---cCccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHHh----cCCccEEEEecccceeecCCCCCCc
Q 020104           80 I---AGCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCLK----SGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        80 ~---~~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                      .   .++|++||+|+....      +.+++ +..+++|+.++..+.+++..    .+ ..++|++||......+      
T Consensus        69 ~~~~~~id~lVn~ag~~~~~~~~~~~~~~~-~~~~~vn~~~~~~~~~~~~~~~~~~~-~g~Ii~isS~~~~~~~------  140 (245)
T d2ag5a1          69 ANEVERLDVLFNVAGFVHHGTVLDCEEKDW-DFSMNLNVRSMYLMIKAFLPKMLAQK-SGNIINMSSVASSVKG------  140 (245)
T ss_dssp             HHHCSCCSEEEECCCCCCCBCGGGCCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCSBTTTBC------
T ss_pred             ccccccceeEEecccccCCCChhhCCHHHH-HHHHHHhhccchhHHHhhCcccccCC-CceeeeeechhhccCC------
Confidence            4   379999999986552      22233 47889999998888876653    34 4699999985431000      


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCC--CccHHHHHHHHhCC
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKF--AGSVRSSLALILGN  221 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~--~~~~~~~~~~~~~~  221 (331)
                                     .+....|+.+|.+.+.+++.++.+.   |++++.+.||.+-.+......  ............. 
T Consensus       141 ---------------~~~~~~Y~~sKaal~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~-  204 (245)
T d2ag5a1         141 ---------------VVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLK-  204 (245)
T ss_dssp             ---------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHH-
T ss_pred             ---------------ccchhHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeceeechhhHhhhhhhhhhHHHHHHHHh-
Confidence                           1234579999999999999988765   799999999999876321100  0001111111111 


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEec
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSS  260 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~  260 (331)
                      ..++     ..+...+|+++++.+++....  ..| .+.++|
T Consensus       205 ~~pl-----~R~~~pedva~~v~fL~s~~s~~iTG~~i~VDG  241 (245)
T d2ag5a1         205 RQKT-----GRFATAEEIAMLCVYLASDESAYVTGNPVIIDG  241 (245)
T ss_dssp             TCTT-----SSCEEHHHHHHHHHHHHSGGGTTCCSCEEEECT
T ss_pred             cCCC-----CCCcCHHHHHHHHHHHhChhhCCCcCceEEeCC
Confidence            1122     268899999999999997543  344 455654

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.80  E-value=1e-18  Score=144.28  Aligned_cols=169  Identities=21%  Similarity=0.213  Sum_probs=123.1

Q ss_pred             CceEEEecCcchhHHHHHHHHHH---CCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLD---HGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      ||+||||||++.||.++++.|++   .|++|++.+|+.     +..+.+..+.+   ...++.++.+|+.|+++++++++
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~-----~~~~~~~~~~~---~~~~~~~~~~Dvs~~~~v~~~~~   73 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNR-----EQAKELEDLAK---NHSNIHILEIDLRNFDAYDKLVA   73 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCT-----TSCHHHHHHHH---HCTTEEEEECCTTCGGGHHHHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCH-----HHHHHHHHHHh---cCCcEEEEEEEeccHHHHHHHHh
Confidence            57899999999999999999974   689999999998     44444332221   23589999999999988876643


Q ss_pred             ---------CccEEEEecccCCCC----CCCh--hhHHHHHHHHHHHHHHHHHHh----c-----------CCccEEEEe
Q 020104           82 ---------GCTGVLHVATPVDFE----DKEP--EEVITQRAINGTLGILKSCLK----S-----------GTVKRVVYT  131 (331)
Q Consensus        82 ---------~~d~Vih~a~~~~~~----~~~~--~~~~~~~n~~~~~~l~~~~~~----~-----------~~~~~~v~~  131 (331)
                               ++|++||+|+.....    ..+.  .+..+++|+.++..+.+++..    .           + ..++|++
T Consensus        74 ~i~~~~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~-~g~ii~i  152 (248)
T d1snya_          74 DIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVG-RAAIINM  152 (248)
T ss_dssp             HHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTT-TCEEEEE
T ss_pred             hhHHHhhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcccccccccc-ccccccc
Confidence                     489999999864421    1111  236889999998888776542    1           2 3689999


Q ss_pred             cccceeecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCC
Q 020104          132 SSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGP  201 (331)
Q Consensus       132 SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~  201 (331)
                      ||.........                   .+....|+.||.+...+.+.++.+.   +++++.+.||.+-.+
T Consensus       153 ~S~~g~~~~~~-------------------~~~~~~Y~aSKaal~~lt~~la~e~~~~gI~vn~v~PG~v~T~  206 (248)
T d1snya_         153 SSILGSIQGNT-------------------DGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTD  206 (248)
T ss_dssp             CCGGGCSTTCC-------------------SCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCST
T ss_pred             cccccccCCCC-------------------CCChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCcccCC
Confidence            99653210000                   1123479999999999998887654   799999999998665

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.78  E-value=5e-19  Score=146.28  Aligned_cols=212  Identities=10%  Similarity=0.028  Sum_probs=145.4

Q ss_pred             eEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc-----
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA-----   81 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-----   81 (331)
                      ++|||||++.||+.+++.|++.|++|.+.+|+.     +..+.++...        ..++.+|+.+.+++.++++     
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~-----~~~~~~~~~~--------~~~~~~dv~~~~~~~~~~~~~~~~   68 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESF-----KQKDELEAFA--------ETYPQLKPMSEQEPAELIEAVTSA   68 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGG-----GSHHHHHHHH--------HHCTTSEECCCCSHHHHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHhhh--------CcEEEeccCCHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999987     3333333221        1234688888888777664     


Q ss_pred             --CccEEEEecccCC-CC------CCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCccc
Q 020104           82 --GCTGVLHVATPVD-FE------DKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        82 --~~d~Vih~a~~~~-~~------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                        ++|++||+|+... ..      .+++. ..+++|+.++..+.+++.    +.+ -.++|++||...+...        
T Consensus        69 ~G~iDiLVnNAg~~~~~~~~~~~~~e~~~-~~~~vnl~~~~~~~~~~~~~m~~~~-~G~IV~isS~~~~~~~--------  138 (252)
T d1zmta1          69 YGQVDVLVSNDIFAPEFQPIDKYAVEDYR-GAVEALQIRPFALVNAVASQMKKRK-SGHIIFITSATPFGPW--------  138 (252)
T ss_dssp             HSCCCEEEEECCCCCCCCCGGGSCHHHHH-HHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCSTTTSCC--------
T ss_pred             cCCCCEEEECCcCCCCCCChhhCCHHHHH-HHHHHHhHHHHHHHHHHHHhhcccc-cceeeccccccccccc--------
Confidence              6899999998532 11      12233 677899888877777654    444 4699999997654211        


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCcc----HHHHHHHHhCC
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGS----VRSSLALILGN  221 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~----~~~~~~~~~~~  221 (331)
                                    +....|+.+|.+.+.+.+.++.+.   +++++.+.||.+..+.........    ......... .
T Consensus       139 --------------~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~e~~~~~~-~  203 (252)
T d1zmta1         139 --------------KELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVK-K  203 (252)
T ss_dssp             --------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHH-H
T ss_pred             --------------ccccccccccccHHHHHHHHHHHhcccCcEEEEEecCCCcCcchhhhhhcccccCCHHHHHHHH-h
Confidence                          113479999999999999988765   799999999999876433211100    001111111 1


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                      ..+++     .+...+|+|.++++++....  ..| .+.++|.
T Consensus       204 ~~pl~-----R~g~pedvA~~v~fL~S~~s~~iTG~~i~vdGG  241 (252)
T d1zmta1         204 VTALQ-----RLGTQKELGELVAFLASGSCDYLTGQVFWLAGG  241 (252)
T ss_dssp             HSSSS-----SCBCHHHHHHHHHHHHTTSCGGGTTCEEEESTT
T ss_pred             cCCCC-----CCcCHHHHHHHHHHHhCchhcCCcCCeEEECCC
Confidence            11222     57899999999999997654  244 4556554

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3.7e-19  Score=145.87  Aligned_cols=198  Identities=15%  Similarity=0.093  Sum_probs=142.6

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      -.+|.++||||++.||++++++|+++|++|++++|+.     +..+.+..  ++.....++..+.+|++|++++.++++ 
T Consensus         5 l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~-----~~l~~~~~--~~~~~~~~~~~~~~Dvs~~~~v~~~~~~   77 (244)
T d1yb1a_           5 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK-----HGLEETAA--KCKGLGAKVHTFVVDCSNREDIYSSAKK   77 (244)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHH--HHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHH--HHHhcCCcEEEEEeeCCCHHHHHHHHHH
Confidence            3578999999999999999999999999999999987     22222211  111223578899999999998887764 


Q ss_pred             ------CccEEEEecccCCCCCC-----ChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCc
Q 020104           82 ------GCTGVLHVATPVDFEDK-----EPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDM  146 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~~~-----~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~  146 (331)
                            ++|++||+|+.......     +..+..+++|+.++.++.+++.    +.+ -.++|++||.......      
T Consensus        78 i~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~-~G~Iv~isS~~~~~~~------  150 (244)
T d1yb1a_          78 VKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNN-HGHIVTVASAAGHVSV------  150 (244)
T ss_dssp             HHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCCC-CCCH------
T ss_pred             HHHHcCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcC-CceEEEeecchhcCCC------
Confidence                  58999999986552211     1124788999999887777554    445 5799999997765210      


Q ss_pred             ccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH------cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhC
Q 020104          147 MDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE------HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILG  220 (331)
Q Consensus       147 ~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~------~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~  220 (331)
                                      +....|+.+|.+.+.+.+.++.+      .|++++.+.||.|-.+....               
T Consensus       151 ----------------~~~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T~~~~~---------------  199 (244)
T d1yb1a_         151 ----------------PFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKN---------------  199 (244)
T ss_dssp             ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTC---------------
T ss_pred             ----------------CCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCChhhhC---------------
Confidence                            11347999999999999988765      37999999999886543211               


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      .....     ...+..+|+|+.++..+..+
T Consensus       200 ~~~~~-----~~~~~pe~va~~i~~~~~~~  224 (244)
T d1yb1a_         200 PSTSL-----GPTLEPEEVVNRLMHGILTE  224 (244)
T ss_dssp             THHHH-----CCCCCHHHHHHHHHHHHHTT
T ss_pred             cCccc-----cCCCCHHHHHHHHHHHHhcC
Confidence            00111     14567899999999877664

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=99.77  E-value=2.6e-18  Score=142.85  Aligned_cols=209  Identities=17%  Similarity=0.139  Sum_probs=145.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCe-EEEEecCCCCcccCCcccccc-ccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYS-VTTTVRSELDPEHRNSKDLSF-LKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      +..+||||||+|.||.+++++|+++|++ |+++.|+..     ..+.... +.++.....++.++.+|+.|.+++.++++
T Consensus         8 p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~-----~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~   82 (259)
T d2fr1a1           8 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGP-----DADGAGELVAELEALGARTTVAACDVTDRESVRELLG   82 (259)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGG-----GSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHH
T ss_pred             CcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCcc-----CHHHHHHHHHHHHhccccccccccccchHHHHHHhhc
Confidence            3568999999999999999999999984 788888741     2111111 11111223578999999999999988875


Q ss_pred             ------CccEEEEecccCCCC---CCC--hhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCCCCCCcccCC
Q 020104           82 ------GCTGVLHVATPVDFE---DKE--PEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDET  150 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~---~~~--~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~E~  150 (331)
                            .+|.|||+++.....   ..+  ..+..++.|+.++.++.++++..+ ..++|++||.......          
T Consensus        83 ~i~~~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~-~~~iv~~SS~a~~~g~----------  151 (259)
T d2fr1a1          83 GIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELD-LTAFVLFSSFASAFGA----------  151 (259)
T ss_dssp             TSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSC-CSEEEEEEEHHHHTCC----------
T ss_pred             cccccccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccC-CceEeeecchhhccCC----------
Confidence                  479999999865522   111  123678899999999999988877 7899999998765311          


Q ss_pred             CCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHcCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCC
Q 020104          151 FWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLN  230 (331)
Q Consensus       151 ~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (331)
                                  +....|+.+|...+.+.+.+.. .|++++.|.||.+.+++.....      ....+    ...+    
T Consensus       152 ------------~~~~~YaAaka~l~~la~~~~~-~Gi~v~~I~pg~~~~~g~~~~~------~~~~~----~~~G----  204 (259)
T d2fr1a1         152 ------------PGLGGYAPGNAYLDGLAQQRRS-DGLPATAVAWGTWAGSGMAEGP------VADRF----RRHG----  204 (259)
T ss_dssp             ------------TTCTTTHHHHHHHHHHHHHHHH-TTCCCEEEEECCBC------------------C----TTTT----
T ss_pred             ------------cccHHHHHHHHhHHHHHHHHHh-CCCCEEECCCCcccCCccccch------HHHHH----HhcC----
Confidence                        1134699999999998887754 5899999999988776532110      00000    0111    


Q ss_pred             ccceeHHHHHHHHHHhhcCCCCCce
Q 020104          231 TSMVHVDDVARAHIFLLEYPDAKGR  255 (331)
Q Consensus       231 ~~~i~v~D~a~~~~~~~~~~~~~~~  255 (331)
                      ...+..+++++++..++..+.....
T Consensus       205 ~~~~~~~~~~~~l~~~l~~~~~~~~  229 (259)
T d2fr1a1         205 VIEMPPETACRALQNALDRAEVCPI  229 (259)
T ss_dssp             EECBCHHHHHHHHHHHHHTTCSSCE
T ss_pred             CCCCCHHHHHHHHHHHHhCCCceEE
Confidence            2457899999999999987655443

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=5.7e-18  Score=142.30  Aligned_cols=221  Identities=17%  Similarity=0.162  Sum_probs=145.2

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEe---cCCCCcccCCccccc-cccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTV---RSELDPEHRNSKDLS-FLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~---r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      +|.||||||++.||+++++.|++.|.+|+.+.   |+.     +....+. ...++.....++..+.+|+.|.+++.+++
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~   76 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDL-----KTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAAR   76 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCG-----GGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHH
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCCh-----hhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhh
Confidence            35679999999999999999999998765554   433     2222221 12223333467999999999999998887


Q ss_pred             c-----CccEEEEecccCCCC------CCChhhHHHHHHHHHHHHHHHHH----HhcCCccEEEEecccceeecCCCCCC
Q 020104           81 A-----GCTGVLHVATPVDFE------DKEPEEVITQRAINGTLGILKSC----LKSGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        81 ~-----~~d~Vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                      +     .+|++||+|+.....      .+++ +..+++|+.++.++.+++    ++.+ -.++|++||......      
T Consensus        77 ~~~~~g~idilvnnag~~~~~~~~~~~~e~~-~~~~~vN~~g~~~~~~~~lp~m~~~~-~G~Iv~isS~~g~~~------  148 (285)
T d1jtva_          77 ERVTEGRVDVLVCNAGLGLLGPLEALGEDAV-ASVLDVNVVGTVRMLQAFLPDMKRRG-SGRVLVTGSVGGLMG------  148 (285)
T ss_dssp             HTCTTSCCSEEEECCCCCCCSCGGGSCHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEEGGGTSC------
T ss_pred             hhccccchhhhhhcccccccccccchhHhhh-hhhhhcchhHHHHHHHHHHHHHHHcC-CCceEEEechhhcCC------
Confidence            4     489999999855421      2233 478899999888777765    4455 579999999765421      


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCcc-----------H
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGS-----------V  211 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~-----------~  211 (331)
                                      .+....|+.+|.+.+.+.+.++.+.   |++++.+.||.+-.+-........           .
T Consensus       149 ----------------~~~~~~Y~asKaal~~l~~~la~El~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~  212 (285)
T d1jtva_         149 ----------------LPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTF  212 (285)
T ss_dssp             ----------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-------CCHHHHHHTSCHHHH
T ss_pred             ----------------CCCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCCChHHHHhccCHHHHhhccchhHH
Confidence                            1224579999999999999888764   899999999999765322111100           0


Q ss_pred             HHHHHHHh-CCCcccccCCCccceeHHHHHHHHHHhhcCCCCCceEEEe
Q 020104          212 RSSLALIL-GNREEYGFLLNTSMVHVDDVARAHIFLLEYPDAKGRYICS  259 (331)
Q Consensus       212 ~~~~~~~~-~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~  259 (331)
                      ..+..... ......     ......+|+|+++++++..+.+.-.|..+
T Consensus       213 ~~~~~~~~~~~~~~~-----~~~~~PeeVA~~v~~~~~~~~p~~ry~~g  256 (285)
T d1jtva_         213 HRFYQYLAHSKQVFR-----EAAQNPEEVAEVFLTALRAPKPTLRYFTT  256 (285)
T ss_dssp             HHHHHHHHHHHHHHH-----HHCBCHHHHHHHHHHHHHCSSCCSEEESC
T ss_pred             HHHHHHHHHHhhhhc-----ccCCCHHHHHHHHHHHHhCCCCCeEEecH
Confidence            00000000 000000     13567899999999999877654455433

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=99.76  E-value=8.7e-18  Score=142.30  Aligned_cols=221  Identities=15%  Similarity=0.111  Sum_probs=143.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|++|||||+|.||++++++|++.|++|++++|+.     ..... .+.+...  ....+..+.+|+.+.+++.+++. 
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~-----~~l~~~~~~l~~~--~g~~~~~~~~D~~~~~~v~~~~~~   96 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM-----DVLKATAEQISSQ--TGNKVHAIQCDVRDPDMVQNTVSE   96 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHHH--HSSCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH-----HHHHHHHHHHHHh--cCCceEEEEecccChHHHHHHhhh
Confidence            358899999999999999999999999999999987     22211 1122111  12467889999999988876653 


Q ss_pred             ------CccEEEEecccCCCCC------CChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCC
Q 020104           82 ------GCTGVLHVATPVDFED------KEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVD  145 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~~------~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~  145 (331)
                            ++|++||+|+......      .+. ...+.+|..+...+...+.    .......++.+||..... .     
T Consensus        97 ~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~-~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~-~-----  169 (294)
T d1w6ua_          97 LIKVAGHPNIVINNAAGNFISPTERLSPNAW-KTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAET-G-----  169 (294)
T ss_dssp             HHHHTCSCSEEEECCCCCCCSCGGGCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHH-C-----
T ss_pred             hhhhccccchhhhhhhhccccccccchhhhh-hhheeeecccchhhhhhhhcccccccccccccccccchhhh-c-----
Confidence                  6899999998654221      122 3566778777666655433    222245677777654332 1     


Q ss_pred             cccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          146 MMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       146 ~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                      .+...+|+.+|.+.+.+++.++.+.   |++++.|.||.+..+.........-. ....... .
T Consensus       170 ----------------~~~~~~YsasKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~-~~~~~~~-~  231 (294)
T d1w6ua_         170 ----------------SGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGT-FEKEMIG-R  231 (294)
T ss_dssp             ----------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSH-HHHHHHT-T
T ss_pred             ----------------ccccchHHHHHHHHHHHHHHHHHHHhHhCeEEEEEccCccccchhhhccCCcHH-HHHHHhh-c
Confidence                            1123479999999999999988765   79999999999987653321111111 1111111 1


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                      .+++     .+...+|+|+++.+++....  ..| ...++|+
T Consensus       232 ~pl~-----R~~~pediA~~v~fL~sd~s~~itG~~i~vDGG  268 (294)
T d1w6ua_         232 IPCG-----RLGTVEELANLAAFLCSDYASWINGAVIKFDGG  268 (294)
T ss_dssp             CTTS-----SCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred             CCCC-----CCCCHHHHHHHHHHHhCchhcCCCCcEEEECCC
Confidence            2222     67789999999999997543  344 4556554

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=2.5e-18  Score=145.41  Aligned_cols=214  Identities=14%  Similarity=0.097  Sum_probs=142.7

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccC-Ccccccccc-CCCCCCCcEEEEeCCCCCCccHHH
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHR-NSKDLSFLK-NLPGASERLRIFHADLSHPDGFDA   78 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~D~~~~~~~~~   78 (331)
                      |.-.+|++|||||++.||+++++.|+++|++|++.+|+.+..... ....++.+. +..   .....+.+|+.|.+++++
T Consensus         3 m~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~   79 (302)
T d1gz6a_           3 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIR---RRGGKAVANYDSVEAGEK   79 (302)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHH---HTTCEEEEECCCGGGHHH
T ss_pred             cCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHh---hcccccccccchHHHHHH
Confidence            555678999999999999999999999999999998876311111 111111111 110   123345678888777666


Q ss_pred             Hhc-------CccEEEEecccCCC------CCCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCC
Q 020104           79 AIA-------GCTGVLHVATPVDF------EDKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYND  141 (331)
Q Consensus        79 ~~~-------~~d~Vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~  141 (331)
                      +++       ++|++||+||....      ..+++. ..+++|+.++..+.+++.    +.+ -.++|++||....... 
T Consensus        80 ~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~-~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IV~isS~~~~~~~-  156 (302)
T d1gz6a_          80 LVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWD-IIQRVHLRGSFQVTRAAWDHMKKQN-YGRIIMTASASGIYGN-  156 (302)
T ss_dssp             HHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHHCC-
T ss_pred             HHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHh-hhhceeehhhHHHHHHhHHHHHhCC-CcEEEEeCChhhcCCC-
Confidence            553       69999999986542      222343 889999999888887654    445 4699999997765311 


Q ss_pred             CCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHH
Q 020104          142 KDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALI  218 (331)
Q Consensus       142 ~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~  218 (331)
                                           +....|+.+|...+.+.+.++.+.   +++++.+.||.+-.+... .++.         
T Consensus       157 ---------------------~~~~~Y~asKaal~~lt~~la~E~~~~gIrVN~I~PG~~~t~~~~-~~~~---------  205 (302)
T d1gz6a_         157 ---------------------FGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGSRMTET-VMPE---------  205 (302)
T ss_dssp             ---------------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECCSTTTGG-GSCH---------
T ss_pred             ---------------------CCcHHHHHHHHHHHHHHHHHHHHHhccCCceeeeCCCCCCcchhh-cCcH---------
Confidence                                 124579999999999999988765   799999999866322110 0000         


Q ss_pred             hCCCcccccCCCccceeHHHHHHHHHHhhcCCC-C-CceEEEecc
Q 020104          219 LGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD-A-KGRYICSSH  261 (331)
Q Consensus       219 ~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~-~-~~~~~~~~~  261 (331)
                           .+     ..++..+|+|.++++++.... . |..+.++|+
T Consensus       206 -----~~-----~~~~~PedvA~~v~fL~S~~a~itG~~i~vdGG  240 (302)
T d1gz6a_         206 -----DL-----VEALKPEYVAPLVLWLCHESCEENGGLFEVGAG  240 (302)
T ss_dssp             -----HH-----HHHSCGGGTHHHHHHHTSTTCCCCSCEEEEETT
T ss_pred             -----hh-----HhcCCHHHHHHHHHHHcCCCcCCCCcEEEeCCC
Confidence                 00     134556899999999986432 2 334455544

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.75  E-value=2.2e-17  Score=136.29  Aligned_cols=209  Identities=15%  Similarity=0.178  Sum_probs=135.6

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY--SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      +|+||||||++.||.+++++|+++|+  .|++.+|+.     +..+.   +.+..  ..++.++.+|+.|.++++++++ 
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~-----~~~~~---l~~~~--~~~~~~~~~Dvs~~~~v~~~~~~   72 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDV-----EKATE---LKSIK--DSRVHVLPLTVTCDKSLDTFVSK   72 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSG-----GGCHH---HHTCC--CTTEEEEECCTTCHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCH-----HHHHH---HHHhh--CCceEEEEEecCCHHHHHHHHHH
Confidence            37999999999999999999999985  688888887     33333   22221  2579999999999988776653 


Q ss_pred             --------CccEEEEecccCCC----CCCC--hhhHHHHHHHHHHHHHHHHHHh----cC----------CccEEEEecc
Q 020104           82 --------GCTGVLHVATPVDF----EDKE--PEEVITQRAINGTLGILKSCLK----SG----------TVKRVVYTSS  133 (331)
Q Consensus        82 --------~~d~Vih~a~~~~~----~~~~--~~~~~~~~n~~~~~~l~~~~~~----~~----------~~~~~v~~SS  133 (331)
                              ++|++||+||....    ...+  ..+..+++|+.++..+.+++..    .+          ...+++.+|+
T Consensus        73 i~~~~~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~  152 (250)
T d1yo6a1          73 VGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISS  152 (250)
T ss_dssp             HHHHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECC
T ss_pred             HHHHhCCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceecccccccc
Confidence                    38999999986431    1111  1237899999999888776642    11          1246777777


Q ss_pred             cceeecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCcc
Q 020104          134 NAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGS  210 (331)
Q Consensus       134 ~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~  210 (331)
                      ...........     .          ...+...|+.||.+...+.+.++.+.   +++++.+.||.|-.+-..      
T Consensus       153 ~~~~~~~~~~~-----~----------~~~~~~aY~aSKaal~~l~~~la~el~~~gI~v~~i~PG~v~T~m~~------  211 (250)
T d1yo6a1         153 GLGSITDNTSG-----S----------AQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGG------  211 (250)
T ss_dssp             GGGCSTTCCST-----T----------SSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC------------
T ss_pred             ccccccCCccc-----c----------cchhHHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCCCCCC------
Confidence            55432111100     0          01234579999999999999988764   799999999988543100      


Q ss_pred             HHHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC--CCceE-EEecccc
Q 020104          211 VRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKGRY-ICSSHTL  263 (331)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~-~~~~~~~  263 (331)
                                .         ...+..++.++.++..+....  ..|.| +-.+.++
T Consensus       212 ----------~---------~~~~~~e~~a~~~~~~~~~~~~~~sG~f~~~~g~p~  248 (250)
T d1yo6a1         212 ----------K---------NAALTVEQSTAELISSFNKLDNSHNGRFFMRNLKPY  248 (250)
T ss_dssp             --------------------------HHHHHHHHHHHTTCCGGGTTCEEETTEEEC
T ss_pred             ----------C---------CCCCCHHHHHHHHHHHHhcCCCCCCeEEECCCCeeC
Confidence                      0         022456788888888886533  34544 4334443

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.2e-16  Score=131.81  Aligned_cols=210  Identities=15%  Similarity=0.129  Sum_probs=142.6

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh--
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI--   80 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~--   80 (331)
                      -++|.+|||||++.||.+++++|+++|++|++++|+.     +..+....  ++   ......+.+|+.+...+.+..  
T Consensus         3 lkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~-----~~~~~~~~--~l---~~~~~~~~~~~~~~~~~~~~~~~   72 (248)
T d2o23a1           3 VKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPN-----SGGEAQAK--KL---GNNCVFAPADVTSEKDVQTALAL   72 (248)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTT-----SSHHHHHH--HH---CTTEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh-----HHHHHHHH--Hh---CCCcccccccccccccccccccc
Confidence            3578999999999999999999999999999999987     33322211  11   146788889998876655443  


Q ss_pred             -----cCccEEEEecccCCCCC-----------CChhhHHHHHHHHHHHHHHHHHHhc----------CCccEEEEeccc
Q 020104           81 -----AGCTGVLHVATPVDFED-----------KEPEEVITQRAINGTLGILKSCLKS----------GTVKRVVYTSSN  134 (331)
Q Consensus        81 -----~~~d~Vih~a~~~~~~~-----------~~~~~~~~~~n~~~~~~l~~~~~~~----------~~~~~~v~~SS~  134 (331)
                           ...|.++++++......           .+..+..+++|+.++.++.+++...          + ..++|++||.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~-~G~Ii~isS~  151 (248)
T d2o23a1          73 AKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQ-RGVIINTASV  151 (248)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSC-CEEEEEECCT
T ss_pred             cccccccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCC-ceEEEEecch
Confidence                 25788888875332110           0122378899999999999887542          2 3489999997


Q ss_pred             ceeecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccH
Q 020104          135 AAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSV  211 (331)
Q Consensus       135 ~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~  211 (331)
                      ..+..                      .+....|+.+|.+.+.+.+.++.+.   +++++.+.||.+..+..... +   
T Consensus       152 ~~~~~----------------------~~~~~~Y~asKaal~~lt~~la~e~~~~gIrvN~I~PG~i~T~~~~~~-~---  205 (248)
T d2o23a1         152 AAFEG----------------------QVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSL-P---  205 (248)
T ss_dssp             HHHHC----------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC----------
T ss_pred             hhccC----------------------CCCchHHHHHHHHHHHHHHHHHHHhcccCcceeeeccCceecchhhcC-C---
Confidence            76521                      1224579999999999999988775   79999999999876642211 1   


Q ss_pred             HHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCCCCc
Q 020104          212 RSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDAKG  254 (331)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~  254 (331)
                      ...........+..     ..+...+|+|+++.++++.+...|
T Consensus       206 ~~~~~~~~~~~pl~-----~R~g~peevA~~v~fL~s~~~itG  243 (248)
T d2o23a1         206 EKVCNFLASQVPFP-----SRLGDPAEYAHLVQAIIENPFLNG  243 (248)
T ss_dssp             ----CHHHHTCSSS-----CSCBCHHHHHHHHHHHHHCTTCCS
T ss_pred             HHHHHHHHhcCCCC-----CCCcCHHHHHHHHHHHHhCCCCCc
Confidence            01111111111111     157789999999999987654444

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=3.1e-18  Score=142.28  Aligned_cols=211  Identities=15%  Similarity=0.067  Sum_probs=141.5

Q ss_pred             CceEEEecCcchhHHHHHHHHHH---CCCeEEEEecCCCCcccCCccccc-cccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLD---HGYSVTTTVRSELDPEHRNSKDLS-FLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      +|.++||||++.||.+++++|++   +|++|++++|+.     +..+.+. .+.. .....++.++.+|+.|++++.+++
T Consensus         6 gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~-----~~l~~~~~~l~~-~~~~~~~~~~~~Dvs~~~~v~~l~   79 (259)
T d1oaaa_           6 CAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSE-----SMLRQLKEELGA-QQPDLKVVLAAADLGTEAGVQRLL   79 (259)
T ss_dssp             SEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCH-----HHHHHHHHHHHH-HCTTSEEEEEECCTTSHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCH-----HHHHHHHHHHHh-hcCCceEEEEEccCCCHHHHHHHH
Confidence            57889999999999999999986   699999999987     2322221 1111 111246889999999998888775


Q ss_pred             c-----------CccEEEEecccCCCC------CCC--hhhHHHHHHHHHHHHHHHHHHhcC-----CccEEEEecccce
Q 020104           81 A-----------GCTGVLHVATPVDFE------DKE--PEEVITQRAINGTLGILKSCLKSG-----TVKRVVYTSSNAA  136 (331)
Q Consensus        81 ~-----------~~d~Vih~a~~~~~~------~~~--~~~~~~~~n~~~~~~l~~~~~~~~-----~~~~~v~~SS~~~  136 (331)
                      +           ..|++||+|+.....      ..+  ..+..+++|+.++..+.+++...=     ...++|++||...
T Consensus        80 ~~~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~  159 (259)
T d1oaaa_          80 SAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCA  159 (259)
T ss_dssp             HHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGG
T ss_pred             HHHHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccccccccccc
Confidence            2           367999999854311      111  123688999999999999886531     1348999999765


Q ss_pred             eecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc-CCcEEEeccCceeCCCCCCCC--CccHHH
Q 020104          137 VFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH-GLDLVTLIPSMVVGPFICPKF--AGSVRS  213 (331)
Q Consensus       137 ~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~-~~~~~ilRp~~v~G~~~~~~~--~~~~~~  213 (331)
                      ...                      .+....|+.+|.+.+.+.+.++.+. +++++.+.||.+..+......  ... ..
T Consensus       160 ~~~----------------------~~~~~~Y~asKaal~~lt~~la~e~~gIrVn~v~PG~i~T~~~~~~~~~~~~-~~  216 (259)
T d1oaaa_         160 LQP----------------------YKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDMQQLARETSKD-PE  216 (259)
T ss_dssp             TSC----------------------CTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHHHHHHHHHCSC-HH
T ss_pred             cCC----------------------CccchHHHHHHHHHHHHHHHHHhCCCCCEEEEEEcCCCCCHHHHHhhhcCCC-HH
Confidence            421                      1224579999999999999888764 799999999988765210000  000 00


Q ss_pred             HHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          214 SLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                      ....+.. ....     ..+...+|+|++++.++...
T Consensus       217 ~~~~~~~-~~~~-----~r~~~p~evA~~i~~ll~~~  247 (259)
T d1oaaa_         217 LRSKLQK-LKSD-----GALVDCGTSAQKLLGLLQKD  247 (259)
T ss_dssp             HHHHHHH-HHHT-----TCSBCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHh-cCCC-----CCCCCHHHHHHHHHHHhhhc
Confidence            0000000 0011     15678999999999988653

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=7.3e-17  Score=131.88  Aligned_cols=190  Identities=14%  Similarity=0.113  Sum_probs=131.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH-----
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA-----   79 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-----   79 (331)
                      +|+||||||+|.||+++++.|+++|++|.+++|+..     ...            .....+..|..+.++....     
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~-----~~~------------~~~~~~~~~~~~~~~~~~~~~~~~   64 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN-----EEA------------SASVIVKMTDSFTEQADQVTAEVG   64 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC-----TTS------------SEEEECCCCSCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc-----ccc------------cccceeecccCcHHHHHHHHHHHH
Confidence            589999999999999999999999999999988762     110            1223444555444333322     


Q ss_pred             --hc--CccEEEEecccCC---CCCCCh---hhHHHHHHHHHHHHHHHHHHhc-CCccEEEEecccceeecCCCCCCccc
Q 020104           80 --IA--GCTGVLHVATPVD---FEDKEP---EEVITQRAINGTLGILKSCLKS-GTVKRVVYTSSNAAVFYNDKDVDMMD  148 (331)
Q Consensus        80 --~~--~~d~Vih~a~~~~---~~~~~~---~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~~~~~  148 (331)
                        +.  ++|++||+||...   ......   .+..+++|+.++.++.+++..+ ..-.++|++||......         
T Consensus        65 ~~~~~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~~---------  135 (236)
T d1dhra_          65 KLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDG---------  135 (236)
T ss_dssp             HHHTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSC---------
T ss_pred             HHhCCCCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHcCC---------
Confidence              22  4899999998433   111221   2367899999999888887753 11358999999765421         


Q ss_pred             CCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH-----cCCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCc
Q 020104          149 ETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE-----HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE  223 (331)
Q Consensus       149 E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~-----~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  223 (331)
                                   .+....|+.+|.+.+.+.+.++.+     .+++++.+.||.+..+.            ..... ...
T Consensus       136 -------------~~~~~~Y~asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~~------------~~~~~-~~~  189 (236)
T d1dhra_         136 -------------TPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPM------------NRKSM-PEA  189 (236)
T ss_dssp             -------------CTTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHH------------HHHHS-TTS
T ss_pred             -------------ccCCcccHHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCCc------------chhhC-ccc
Confidence                         111347999999999999998865     36999999999997652            11111 111


Q ss_pred             ccccCCCccceeHHHHHHHHHHhhcCCC
Q 020104          224 EYGFLLNTSMVHVDDVARAHIFLLEYPD  251 (331)
Q Consensus       224 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~  251 (331)
                      .+     ..++..+|+++.+.+++....
T Consensus       190 ~~-----~~~~~pe~va~~~~~l~s~~~  212 (236)
T d1dhra_         190 DF-----SSWTPLEFLVETFHDWITGNK  212 (236)
T ss_dssp             CG-----GGSEEHHHHHHHHHHHHTTTT
T ss_pred             hh-----hcCCCHHHHHHHHHHHhCCCc
Confidence            11     267889999999999987543

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.69  E-value=3.8e-16  Score=127.58  Aligned_cols=187  Identities=15%  Similarity=0.159  Sum_probs=127.0

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHH-------
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDA-------   78 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~-------   78 (331)
                      .|||||||+|.||.+++++|+++|++|++++|+..     ...            .....+.+|..+.+....       
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~-----~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~   65 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN-----DQA------------DSNILVDGNKNWTEQEQSILEQTAS   65 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC-----TTS------------SEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch-----hcc------------cccceeccccCchhHHHHHHHHHHH
Confidence            58999999999999999999999999999999872     110            122344556655433222       


Q ss_pred             Hh--cCccEEEEecccCC---CCCCCh---hhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCCCCcccC
Q 020104           79 AI--AGCTGVLHVATPVD---FEDKEP---EEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKDVDMMDE  149 (331)
Q Consensus        79 ~~--~~~d~Vih~a~~~~---~~~~~~---~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~E  149 (331)
                      .+  .++|++||+||...   ....+.   .+..+++|+.++..+.+++..+- .-.++|++||......          
T Consensus        66 ~~~~g~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~~----------  135 (235)
T d1ooea_          66 SLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGP----------  135 (235)
T ss_dssp             HHTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSC----------
T ss_pred             HhcCCCeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhcCC----------
Confidence            22  25899999998533   112222   23568899999988888777541 1358999999765521          


Q ss_pred             CCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc-----CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCCcc
Q 020104          150 TFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH-----GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREE  224 (331)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~-----~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~  224 (331)
                                  .+...+|+.+|.+.+.+.+.++.+.     +++++.+.|+.+-.+.            ....... ..
T Consensus       136 ------------~~~~~~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T~~------------~~~~~~~-~~  190 (235)
T d1ooea_         136 ------------TPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPM------------NRKWMPN-AD  190 (235)
T ss_dssp             ------------CTTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHH------------HHHHSTT-CC
T ss_pred             ------------cccccchHHHHHHHHHHHHHHHHHhccCCCceEEEEEecCcCcCcc------------hhhhCcC-Cc
Confidence                        1124589999999999999988663     5788889999875431            1111111 11


Q ss_pred             cccCCCccceeHHHHHHHHHHhhcC
Q 020104          225 YGFLLNTSMVHVDDVARAHIFLLEY  249 (331)
Q Consensus       225 ~~~~~~~~~i~v~D~a~~~~~~~~~  249 (331)
                      .     ..++..+|+++.++.++..
T Consensus       191 ~-----~~~~~~~~va~~~~~~l~~  210 (235)
T d1ooea_         191 H-----SSWTPLSFISEHLLKWTTE  210 (235)
T ss_dssp             G-----GGCBCHHHHHHHHHHHHHC
T ss_pred             c-----ccCCCHHHHHHHHHHHhcC
Confidence            1     2678899999998765544

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=9.4e-17  Score=134.38  Aligned_cols=210  Identities=18%  Similarity=0.095  Sum_probs=135.7

Q ss_pred             CceE-EEecCcchhHHHHHHHHHHC-CCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            5 KGRV-CVTGGTGFIASWLIMRLLDH-GYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         5 ~~~i-lVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      +|+| |||||++.||.++++.|++. |++|++.+|+.     +..+. .+.+++   ...++.++.+|+.|.++++++++
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~-----~~~~~~~~~l~~---~~~~~~~~~~Dvs~~~sv~~~~~   73 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDV-----TRGQAAVQQLQA---EGLSPRFHQLDIDDLQSIRALRD   73 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSH-----HHHHHHHHHHHH---TTCCCEEEECCTTCHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCH-----HHHHHHHHHHHh---cCCcEEEEEEecCCHHHHHHHHH
Confidence            3455 99999999999999999986 89999999987     22222 222222   23568899999999998877653


Q ss_pred             -------CccEEEEecccCCCC--CCC---hhhHHHHHHHHHHHHHHHHHHhc-CCccEEEEecccceeecCCCCCCc--
Q 020104           82 -------GCTGVLHVATPVDFE--DKE---PEEVITQRAINGTLGILKSCLKS-GTVKRVVYTSSNAAVFYNDKDVDM--  146 (331)
Q Consensus        82 -------~~d~Vih~a~~~~~~--~~~---~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~SS~~~~~~~~~~~~~--  146 (331)
                             ++|++||+||.....  ...   ..+..+++|+.++..+.+++... ..-.++|++||......... ..+  
T Consensus        74 ~~~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~~~~~~~~-~~~y~  152 (275)
T d1wmaa1          74 FLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKS-CSPEL  152 (275)
T ss_dssp             HHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHT-SCHHH
T ss_pred             HHHHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccceeccccc-cchhh
Confidence                   689999999965421  111   11257889999999999988653 11258999999655421100 000  


Q ss_pred             --------ccCCCCCC----------hhhhhhcCCCCchhHhhHHHHHHHHHHHHHH-------cCCcEEEeccCceeCC
Q 020104          147 --------MDETFWSD----------VDYIRKLDSWGKSYAISKTLTERAALEFAEE-------HGLDLVTLIPSMVVGP  201 (331)
Q Consensus       147 --------~~E~~~~~----------~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~-------~~~~~~ilRp~~v~G~  201 (331)
                              ..+.....          .........|...|+.+|.....+.+.++.+       .+++++.+.||.|-.+
T Consensus       153 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn~v~PG~v~T~  232 (275)
T d1wmaa1         153 QQKFRSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTD  232 (275)
T ss_dssp             HHHHHCSSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCST
T ss_pred             hhhhcccccchhhhccccccchhcccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccCC
Confidence                    00000000          0000011234557999999888777665543       2799999999998654


Q ss_pred             CCCCCCCccHHHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhc
Q 020104          202 FICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLE  248 (331)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~  248 (331)
                      -...                         ......+|.|+.+++++.
T Consensus       233 m~~~-------------------------~~~~~pee~A~~~~~~a~  254 (275)
T d1wmaa1         233 MAGP-------------------------KATKSPEEGAETPVYLAL  254 (275)
T ss_dssp             TTCT-------------------------TCSBCHHHHTHHHHHHHS
T ss_pred             cccC-------------------------cccCCHHHHHHHHHHHHc
Confidence            2111                         012357889998888764

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=2.6e-16  Score=130.52  Aligned_cols=220  Identities=14%  Similarity=0.075  Sum_probs=145.5

Q ss_pred             CCceEEEecCcc--hhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGGTG--FIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      .+|++|||||+|  .||+++++.|+++|++|++..|+.     ...+....+..   .......+..|..+..+....+.
T Consensus         4 ~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~-----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~   75 (258)
T d1qsga_           4 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-----KLKGRVEEFAA---QLGSDIVLQCDVAEDASIDTMFA   75 (258)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST-----TTHHHHHHHHH---HTTCCCEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCH-----HHHHHHHHHHh---hcCCcceeecccchHHHHHHHHH
Confidence            468999999998  799999999999999999999986     33333222211   11355677888888776666553


Q ss_pred             -------CccEEEEecccCCCCCC----------ChhhHHHHHHHHHHHHHHHHHHhcC-CccEEEEecccceeecCCCC
Q 020104           82 -------GCTGVLHVATPVDFEDK----------EPEEVITQRAINGTLGILKSCLKSG-TVKRVVYTSSNAAVFYNDKD  143 (331)
Q Consensus        82 -------~~d~Vih~a~~~~~~~~----------~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~SS~~~~~~~~~~  143 (331)
                             ..|++||+|+.......          +........|+.+...+.+++...- .-+.+|++||......    
T Consensus        76 ~~~~~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~~~----  151 (258)
T d1qsga_          76 ELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERA----  151 (258)
T ss_dssp             HHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSB----
T ss_pred             HhhhcccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhccC----
Confidence                   57999999975431110          1112455677777777777776531 1346888888654321    


Q ss_pred             CCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhC
Q 020104          144 VDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILG  220 (331)
Q Consensus       144 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~  220 (331)
                                        .+....|+.+|.+.+.+++.++.+.   +++++.++||.|..+......  ...........
T Consensus       152 ------------------~~~~~~Y~~sKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~--~~~~~~~~~~~  211 (258)
T d1qsga_         152 ------------------IPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIK--DFRKMLAHCEA  211 (258)
T ss_dssp             ------------------CTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGST--THHHHHHHHHH
T ss_pred             ------------------CCCcHHHHHHHHHHHHHHHHHHHHhCccCceeecccccccccccccccc--hhhhHHHHHHh
Confidence                              1123579999999999999988875   699999999999877533211  11111111111


Q ss_pred             CCcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          221 NREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       221 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                       ..+++     .+...+|++.++.+++....  ..| ++.++|.
T Consensus       212 -~~pl~-----R~~~peeia~~v~fL~s~~s~~itG~~i~vDGG  249 (258)
T d1qsga_         212 -VTPIR-----RTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGG  249 (258)
T ss_dssp             -HSTTS-----SCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred             -CCCCC-----CCcCHHHHHHHHHHHhCchhcCccCceEEECcC
Confidence             11222     57889999999999997543  445 4556553

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.66  E-value=1.9e-15  Score=123.90  Aligned_cols=206  Identities=21%  Similarity=0.177  Sum_probs=138.6

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc----
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA----   81 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----   81 (331)
                      |++|||||++.||+++++.|+++|++|++++|+.+     .              .....+.+|+.+......+..    
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~-----~--------------~~~~~~~~d~~~~~~~~~~~~~~~~   62 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-----G--------------EDLIYVEGDVTREEDVRRAVARAQE   62 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC-----S--------------SSSEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc-----c--------------ccceEeeccccchhhhHHHHHhhhc
Confidence            78999999999999999999999999999999872     1              234567889988765555542    


Q ss_pred             --CccEEEEecccCC----C-----CCCChhhHHHHHHHHHHHHHHHHHHhc---------CCccEEEEecccceeecCC
Q 020104           82 --GCTGVLHVATPVD----F-----EDKEPEEVITQRAINGTLGILKSCLKS---------GTVKRVVYTSSNAAVFYND  141 (331)
Q Consensus        82 --~~d~Vih~a~~~~----~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~---------~~~~~~v~~SS~~~~~~~~  141 (331)
                        ..+.+++.++...    .     ...+..+..+++|+.+...+.+.+...         ....++|++||...+..  
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~--  140 (241)
T d1uaya_          63 EAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEG--  140 (241)
T ss_dssp             HSCEEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHC--
T ss_pred             cccccchhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhccC--
Confidence              3455555554221    0     111122367888988887777765432         11358999999776531  


Q ss_pred             CCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHH
Q 020104          142 KDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALI  218 (331)
Q Consensus       142 ~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~  218 (331)
                                          .+....|+.+|.+.+.+.+.++.+.   |++++.+.||.+..+.....    ........
T Consensus       141 --------------------~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~V~PG~i~T~~~~~~----~~~~~~~~  196 (241)
T d1uaya_         141 --------------------QIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGL----PEKAKASL  196 (241)
T ss_dssp             --------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTS----CHHHHHHH
T ss_pred             --------------------CCCchhhHHHHHHHHHHHHHHHHHHhhcCCceeeecCCcccccccchh----hhhHHHHH
Confidence                                1224589999999999999988764   79999999999976532211    11111111


Q ss_pred             hCCCcccccCCCccceeHHHHHHHHHHhhcCCCCCce-EEEecc
Q 020104          219 LGNREEYGFLLNTSMVHVDDVARAHIFLLEYPDAKGR-YICSSH  261 (331)
Q Consensus       219 ~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~-~~~~~~  261 (331)
                      ....+..+     .+...+|+|+++.+++......|. +.++|.
T Consensus       197 ~~~~~~~~-----R~g~pedvA~~v~fL~s~~~iTG~~i~VDGG  235 (241)
T d1uaya_         197 AAQVPFPP-----RLGRPEEYAALVLHILENPMLNGEVVRLDGA  235 (241)
T ss_dssp             HTTCCSSC-----SCCCHHHHHHHHHHHHHCTTCCSCEEEESTT
T ss_pred             HhcCCCCC-----CCcCHHHHHHHHHHHHhCCCCCCCEEEECCc
Confidence            22211111     567899999999999986555554 456553

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.2e-15  Score=126.98  Aligned_cols=199  Identities=13%  Similarity=0.026  Sum_probs=135.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccccc-ccCCCCCCCcEEEEeCCCCCCccHHHHhc-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSF-LKNLPGASERLRIFHADLSHPDGFDAAIA-   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-   81 (331)
                      .+|++|||||++.||.++++.|+++|++|++++|+.     +..+.... +..  .....+..+.+|+.+......... 
T Consensus        13 ~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~-----~~l~~~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~   85 (269)
T d1xu9a_          13 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK-----ETLQKVVSHCLE--LGAASAHYIAGTMEDMTFAEQFVAQ   85 (269)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHH--HTCSEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHhh--hhcccchhhhhhhhhHHHHHHHHHH
Confidence            468999999999999999999999999999999987     33222211 111  112467788899988876665443 


Q ss_pred             ------CccEEEEecccCCCC---CCC--hhhHHHHHHHHHHHHHHHHHHh---cCCccEEEEecccceeecCCCCCCcc
Q 020104           82 ------GCTGVLHVATPVDFE---DKE--PEEVITQRAINGTLGILKSCLK---SGTVKRVVYTSSNAAVFYNDKDVDMM  147 (331)
Q Consensus        82 ------~~d~Vih~a~~~~~~---~~~--~~~~~~~~n~~~~~~l~~~~~~---~~~~~~~v~~SS~~~~~~~~~~~~~~  147 (331)
                            .+|+++|+|+.....   ..+  ..+..+++|+.++..+.+++..   .+ -.++|++||...+..        
T Consensus        86 ~~~~~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~-~G~ii~isS~~~~~~--------  156 (269)
T d1xu9a_          86 AGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS-NGSIVVVSSLAGKVA--------  156 (269)
T ss_dssp             HHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEEGGGTSC--------
T ss_pred             HHHHhCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhc-CCcceEeccchhcCC--------
Confidence                  689999999854421   112  1236788998888777776642   12 258999999765421        


Q ss_pred             cCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc-----CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          148 DETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH-----GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       148 ~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~-----~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                                    .+....|+.||.+.+.+.+.++.+.     +++++.+.||.|-.+-           ......+. 
T Consensus       157 --------------~p~~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~T~~-----------~~~~~~~~-  210 (269)
T d1xu9a_         157 --------------YPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTET-----------AMKAVSGI-  210 (269)
T ss_dssp             --------------CTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHH-----------HHHHSCGG-
T ss_pred             --------------CCCchHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCCCcH-----------HHHhccCC-
Confidence                          1224589999999999998887653     5889999999885431           01111111 


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCC
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYP  250 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~  250 (331)
                       ..     ......+++++.++..+...
T Consensus       211 -~~-----~~~~~~e~~a~~i~~~~~~~  232 (269)
T d1xu9a_         211 -VH-----MQAAPKEECALEIIKGGALR  232 (269)
T ss_dssp             -GG-----GGCBCHHHHHHHHHHHHHTT
T ss_pred             -cc-----ccCCCHHHHHHHHHHHhhcC
Confidence             11     14466789999888776544

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=99.63  E-value=4.5e-15  Score=124.10  Aligned_cols=220  Identities=12%  Similarity=0.037  Sum_probs=136.6

Q ss_pred             CCceEEEecCcc--hhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGGTG--FIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      ++|++|||||+|  .||.++++.|+++|++|++++|++     ...+..+.+.+.   .....++.+|+.+.+++.+++.
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~-----~~~~~~~~l~~~---~~~~~~~~~d~~~~~~~~~~~~   75 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE-----SLEKRVRPIAQE---LNSPYVYELDVSKEEHFKSLYN   75 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST-----TTHHHHHHHHHH---TTCCCEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHHhh---CCceeEeeecccchhhHHHHHH
Confidence            468999999987  799999999999999999999986     333343333221   2455678999999887776653


Q ss_pred             -------CccEEEEecccCCCC------CCChhhHHHHHHH---HHHHHHHHHHHhcCCccE-EEEecccceeecCCCCC
Q 020104           82 -------GCTGVLHVATPVDFE------DKEPEEVITQRAI---NGTLGILKSCLKSGTVKR-VVYTSSNAAVFYNDKDV  144 (331)
Q Consensus        82 -------~~d~Vih~a~~~~~~------~~~~~~~~~~~n~---~~~~~l~~~~~~~~~~~~-~v~~SS~~~~~~~~~~~  144 (331)
                             .+|++||+++.....      ...........+.   .....+.....+...... ++.+|+..... .    
T Consensus        76 ~~~~~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~-~----  150 (274)
T d2pd4a1          76 SVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTK-Y----  150 (274)
T ss_dssp             HHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS-B----
T ss_pred             HHHHHcCCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeeccccccc-c----
Confidence                   689999999854411      1111112222222   233333333333321234 44444443321 0    


Q ss_pred             CcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCC
Q 020104          145 DMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN  221 (331)
Q Consensus       145 ~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  221 (331)
                                       ......|+.+|...+.+++.++.+.   |++++.+.||.+..+........  ......... 
T Consensus       151 -----------------~~~~~~y~asK~al~~ltr~lA~e~~~~GIrvN~I~PG~v~T~~~~~~~~~--~~~~~~~~~-  210 (274)
T d2pd4a1         151 -----------------MAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADF--RMILKWNEI-  210 (274)
T ss_dssp             -----------------CTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTH--HHHHHHHHH-
T ss_pred             -----------------cccchhhhHHHHHHHHHHHhhHHHhcCcCceecccccCcccCccccccCch--HHHHHHHhh-
Confidence                             1224579999999999998877654   79999999999887643321111  111111111 


Q ss_pred             CcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          222 REEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       222 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                      ....     ..+...+|++.++.+++....  .+| .+.+++.
T Consensus       211 ~~p~-----~r~~~pedIA~~v~fL~S~~s~~itG~~i~vDGG  248 (274)
T d2pd4a1         211 NAPL-----RKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDAG  248 (274)
T ss_dssp             HSTT-----SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             hhhc-----cCCcCHHHHHHHHHHHhChhhCCCcCceEEECCC
Confidence            1112     267899999999999998643  344 4556554

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=99.62  E-value=9.6e-15  Score=122.70  Aligned_cols=220  Identities=14%  Similarity=0.026  Sum_probs=135.3

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCC---------------CCCCcEEEEeC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLP---------------GASERLRIFHA   68 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~---------------~~~~~~~~~~~   68 (331)
                      +..+|||||++.||+++++.|++.|++|++..|+..    ...+.+ +.+.+..               .....+....+
T Consensus         2 ~pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   77 (284)
T d1e7wa_           2 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSA----AEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSA   77 (284)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH----HHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCH----HHHHHHHHHHHhhcCCceEEEEeecccccccccccccccc
Confidence            457899999999999999999999999999887652    111111 1110000               01122334556


Q ss_pred             CCCCCccHHHHhc-------CccEEEEecccCCCCC------CChh-------------hHHHHHHHHHHHHHHHHHHhc
Q 020104           69 DLSHPDGFDAAIA-------GCTGVLHVATPVDFED------KEPE-------------EVITQRAINGTLGILKSCLKS  122 (331)
Q Consensus        69 D~~~~~~~~~~~~-------~~d~Vih~a~~~~~~~------~~~~-------------~~~~~~n~~~~~~l~~~~~~~  122 (331)
                      |+.+.++++++++       ++|++||+||......      .++.             ...+.+|+.++..+.+++.+.
T Consensus        78 dv~~~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~  157 (284)
T d1e7wa_          78 PVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHR  157 (284)
T ss_dssp             CBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccch
Confidence            6777777777653       6999999998654211      0110             125678888888888775431


Q ss_pred             ---------CCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcE
Q 020104          123 ---------GTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDL  190 (331)
Q Consensus       123 ---------~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~  190 (331)
                               +...++|+++|..... +                     .+....|+.+|...+.+.+.++.+.   ++++
T Consensus       158 ~~~~~~~~~~~~~~ii~~~s~~~~~-~---------------------~~~~~~Y~asKaal~~lt~~lA~el~~~gIrv  215 (284)
T d1e7wa_         158 VAGTPAKHRGTNYSIINMVDAMTNQ-P---------------------LLGYTIYTMAKGALEGLTRSAALELAPLQIRV  215 (284)
T ss_dssp             HHTSCGGGSCSCEEEEEECCTTTTS-C---------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred             hhhhHHHhcCCCCcccccccccccC-C---------------------ccceeeeccccccchhhhHHHHHHhCCccccc
Confidence                     1134677777755331 0                     1224579999999999999988765   7999


Q ss_pred             EEeccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          191 VTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       191 ~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                      +.+.||.+-....   ..   ...........+..+     .+...+|++.++++++....  ..| .+.++|+
T Consensus       216 N~I~PG~t~~~~~---~~---~~~~~~~~~~~pl~~-----R~~~peeiA~~v~fL~S~~s~~itG~~i~VDGG  278 (284)
T d1e7wa_         216 NGVGPGLSVLVDD---MP---PAVWEGHRSKVPLYQ-----RDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGG  278 (284)
T ss_dssp             EEEEESSBCCGGG---SC---HHHHHHHHTTCTTTT-----SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             ccccccccccccc---CC---HHHHHHHHhcCCCCC-----CCCCHHHHHHHHHHHhCchhcCccCCeEEECcC
Confidence            9999996422211   11   112222222222112     57789999999999997543  344 4556553

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=99.59  E-value=7.4e-15  Score=122.36  Aligned_cols=223  Identities=13%  Similarity=0.040  Sum_probs=134.5

Q ss_pred             CCceEEEecCcc--hhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGGTG--FIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      .+|++|||||+|  .||.++++.|+++|++|+++.|+..     ..  .+.+.+..  ..+...+++|+.+.+++..+++
T Consensus         5 ~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~-----~~--~~~~~~~~--~~~~~~~~~dv~~~~~~~~~~~   75 (268)
T d2h7ma1           5 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRL-----RL--IQRITDRL--PAKAPLLELDVQNEEHLASLAG   75 (268)
T ss_dssp             TTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCH-----HH--HHHHHTTS--SSCCCEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChH-----HH--HHHHHHHc--CCceeeEeeecccccccccccc
Confidence            368999999765  5999999999999999999999872     11  12222211  2456788999999876655432


Q ss_pred             ----------CccEEEEecccCCCC---CC-----Chh--hHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeecCC
Q 020104           82 ----------GCTGVLHVATPVDFE---DK-----EPE--EVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFYND  141 (331)
Q Consensus        82 ----------~~d~Vih~a~~~~~~---~~-----~~~--~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~~~  141 (331)
                                .+|+++|+|+.....   ..     ...  ...+..|+.........+.........+.++|.....   
T Consensus        76 ~v~~~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~---  152 (268)
T d2h7ma1          76 RVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSR---  152 (268)
T ss_dssp             HHHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSS---
T ss_pred             hhhhccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhcccccccccccccccc---
Confidence                      479999999854311   11     111  1344555556665666555443123445554433221   


Q ss_pred             CCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCC----CCCCccHHHH
Q 020104          142 KDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFIC----PKFAGSVRSS  214 (331)
Q Consensus       142 ~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~----~~~~~~~~~~  214 (331)
                      .                   .+....|+.+|.+.+.+++.++.+.   +++++.|.||.+-.+...    ..........
T Consensus       153 ~-------------------~p~~~~y~~sK~a~~~ltr~lA~e~~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~  213 (268)
T d2h7ma1         153 A-------------------MPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQ  213 (268)
T ss_dssp             C-------------------CTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHH
T ss_pred             c-------------------CcccchhhccccchhhccccchhhhhccCCcceEEecCCCCChhhhhhccchhhhhhccc
Confidence            0                   1123479999999999999888764   799999999988654210    0000000111


Q ss_pred             HHHHh---CCCcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          215 LALIL---GNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       215 ~~~~~---~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                      .....   ....++.    +.+...+|+++++.+++....  ..| .+.++++
T Consensus       214 ~~~~~~~~~~~~pl~----rr~~~p~dva~~v~fL~Sd~a~~iTG~~i~vDGG  262 (268)
T d2h7ma1         214 IQLLEEGWDQRAPIG----WNMKDATPVAKTVCALLSDWLPATTGDIIYADGG  262 (268)
T ss_dssp             HHHHHHHHHHHCTTC----CCTTCCHHHHHHHHHHHSSSCTTCCSEEEEESTT
T ss_pred             hHHHHHHHHhcCCCC----CCCCCHHHHHHHHHHHhCchhcCccCCEEEECcC
Confidence            11100   0011111    246789999999999996533  344 4567554

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.55  E-value=3.6e-13  Score=111.76  Aligned_cols=216  Identities=15%  Similarity=0.146  Sum_probs=129.9

Q ss_pred             eEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccc-cccccCCCCCCCcEEEEeCCCCCCccHH----HH--
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKD-LSFLKNLPGASERLRIFHADLSHPDGFD----AA--   79 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~----~~--   79 (331)
                      ..|||||++.||..+++.|+++|++|++++|+.+    ...++ .+.+...  .......+..|..+..+..    ++  
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSE----GAAQRLVAELNAA--RAGSAVLCKGDLSLSSSLLDCCEDIID   76 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH----HHHHHHHHHHHHH--STTCEEEEECCCSSSTTHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch----HHHHHHHHHHHhh--cCCceEEEecccccchhHHHHHHHHHH
Confidence            6899999999999999999999999999999872    11111 1111111  1245666777766543322    22  


Q ss_pred             -----hcCccEEEEecccCCCCCC------------Ch----hhHHHHHHHHHHHHHHHHHHhcC--------CccEEEE
Q 020104           80 -----IAGCTGVLHVATPVDFEDK------------EP----EEVITQRAINGTLGILKSCLKSG--------TVKRVVY  130 (331)
Q Consensus        80 -----~~~~d~Vih~a~~~~~~~~------------~~----~~~~~~~n~~~~~~l~~~~~~~~--------~~~~~v~  130 (331)
                           +.++|++||+||.......            ..    .......|+.+...........-        ....++.
T Consensus        77 ~~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (266)
T d1mxha_          77 CSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVN  156 (266)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEE
T ss_pred             HHHHHhCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchh
Confidence                 2369999999986442110            00    11233444444444444333211        1235555


Q ss_pred             ecccceeecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCC
Q 020104          131 TSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKF  207 (331)
Q Consensus       131 ~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~  207 (331)
                      +|+.....   .                   .+....|+.+|...+.+.+.++.+.   +++++.+.||.+..+...+  
T Consensus       157 ~~~~~~~~---~-------------------~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~t~~~~~--  212 (266)
T d1mxha_         157 LCDAMTDL---P-------------------LPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPPAMP--  212 (266)
T ss_dssp             ECCGGGGS---C-------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCSSSC--
T ss_pred             hhhccccc---c-------------------CcchhhhhhhHHHHhhhHHHHHHHhCccCcEEEEeccCcEeccccCC--
Confidence            55544321   0                   1224579999999999999888764   7999999999987653221  


Q ss_pred             CccHHHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          208 AGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                          .......... .+++    +.+...+|++.++++++....  ..| .+.++|+
T Consensus       213 ----~~~~~~~~~~-~pl~----r~~~~peeva~~v~fL~s~~s~~itG~~i~vDGG  260 (266)
T d1mxha_         213 ----QETQEEYRRK-VPLG----QSEASAAQIADAIAFLVSKDAGYITGTTLKVDGG  260 (266)
T ss_dssp             ----HHHHHHHHTT-CTTT----SCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             ----HHHHHHHHhc-CCCC----CCCCCHHHHHHHHHHHhCchhCCccCCeEEECcc
Confidence                1112222221 2222    245689999999999998653  345 5567653

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=99.55  E-value=3.6e-13  Score=113.69  Aligned_cols=231  Identities=12%  Similarity=0.012  Sum_probs=134.0

Q ss_pred             CCCCCceEEEecCcc--hhHHHHHHHHHHCCCeEEEEecCCCCccc-----CCccccccccCCCCCC--CcEEEEeCCC-
Q 020104            1 MEEGKGRVCVTGGTG--FIASWLIMRLLDHGYSVTTTVRSELDPEH-----RNSKDLSFLKNLPGAS--ERLRIFHADL-   70 (331)
Q Consensus         1 M~~~~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~~~~~D~-   70 (331)
                      |...+|++|||||+|  .||..+++.|+++|++|++..|++.....     ................  .++..+..++ 
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFD   83 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCC
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhhcc
Confidence            345678999999987  89999999999999999999885410000     0000000000000000  1122222222 


Q ss_pred             -----------------CCCccHHHHh-------cCccEEEEecccCCC--------CCCChhhHHHHHHHHHHHHHHHH
Q 020104           71 -----------------SHPDGFDAAI-------AGCTGVLHVATPVDF--------EDKEPEEVITQRAINGTLGILKS  118 (331)
Q Consensus        71 -----------------~~~~~~~~~~-------~~~d~Vih~a~~~~~--------~~~~~~~~~~~~n~~~~~~l~~~  118 (331)
                                       .+...+.+++       .++|++||+|+....        +.+++ ...+++|+.+...+.++
T Consensus        84 ~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~-~~~~~vn~~~~~~~~~~  162 (297)
T d1d7oa_          84 NPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGY-LAAISASSYSFVSLLSH  162 (297)
T ss_dssp             SGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHH-HHHHHHHTHHHHHHHHH
T ss_pred             ccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccc-cccccchhhhhhhhhhH
Confidence                             2222333332       368999999985321        11123 37888999999999998


Q ss_pred             HHhcCC-ccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHH----HcCCcEEEe
Q 020104          119 CLKSGT-VKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAE----EHGLDLVTL  193 (331)
Q Consensus       119 ~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~----~~~~~~~il  193 (331)
                      +..... -.+.+.+++.+.....                     .+....|+.+|...+.+++.++.    +++++++.+
T Consensus       163 ~~~~~~~~g~~~~~~~~~~~~~~---------------------~~~~~~y~~aKaa~~~l~~~~a~e~~~~~gIrvN~I  221 (297)
T d1d7oa_         163 FLPIMNPGGASISLTYIASERII---------------------PGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTI  221 (297)
T ss_dssp             HGGGEEEEEEEEEEECGGGTSCC---------------------TTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_pred             HHHHhhcCCcceeeeehhhcccc---------------------cccccceecccccccccccccchhccccceEEeccc
Confidence            876531 1245555554432111                     11234699999887777765443    358999999


Q ss_pred             ccCceeCCCCCCCCCccHHHHHHHHhCCCcccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          194 IPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       194 Rp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                      .||.+..+.....  ............ ..+++     .+...+|++.++++++....  ..| .+.++|.
T Consensus       222 ~PG~i~T~~~~~~--~~~~~~~~~~~~-~~Plg-----R~~~peevA~~v~fL~S~~a~~itGq~i~vDGG  284 (297)
T d1d7oa_         222 SAGPLGSRAAKAI--GFIDTMIEYSYN-NAPIQ-----KTLTADEVGNAAAFLVSPLASAITGATIYVDNG  284 (297)
T ss_dssp             EECCCBCCCSSCC--SHHHHHHHHHHH-HSSSC-----CCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred             ccccccchhhhhc--cCCHHHHHHHHh-CCCCC-----CCCCHHHHHHHHHHHhCchhcCCcCceEEECcC
Confidence            9999987754321  111122221111 12232     67899999999999997543  345 4456553

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=99.50  E-value=2.1e-13  Score=112.60  Aligned_cols=222  Identities=18%  Similarity=0.118  Sum_probs=123.8

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh----
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI----   80 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~----   80 (331)
                      ||.||||||++.||++++++|++.|++|++++|+..     .                   ...|+.+.+......    
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~-----~-------------------~~~d~~~~~~~~~~~~~~~   56 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA-----E-------------------VIADLSTAEGRKQAIADVL   56 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS-----S-------------------EECCTTSHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH-----H-------------------HHHHhcCHHHHHHHHHHHH
Confidence            578999999999999999999999999999999762     0                   124555544333322    


Q ss_pred             ----cCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHH----hcCCccEEEEecccceeecCCCCCCccc--CC
Q 020104           81 ----AGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCL----KSGTVKRVVYTSSNAAVFYNDKDVDMMD--ET  150 (331)
Q Consensus        81 ----~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~--E~  150 (331)
                          ..+|+++|+|+..... ... ......|..+...+.+...    +.. ......+++....... ....+..  ..
T Consensus        57 ~~~~~~id~lv~~Ag~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~  132 (257)
T d1fjha_          57 AKCSKGMDGLVLCAGLGPQT-KVL-GNVVSVNYFGATELMDAFLPALKKGH-QPAAVVISSVASAHLA-FDKNPLALALE  132 (257)
T ss_dssp             TTCTTCCSEEEECCCCCTTC-SSH-HHHHHHHTHHHHHHHHHHHHHHHTSS-SCEEEEECCGGGGSSC-GGGCTTHHHHH
T ss_pred             HHhCCCCcEEEEcCCCCCcH-HHH-HHHHHHHHHHHHHHHHHhhhhhhhhc-cCcceeeeeccccchh-hhhhhhhhhcc
Confidence                2489999999854322 223 3666777777666665443    333 3455555553322111 0000000  00


Q ss_pred             --CCCChh-hhh--hcCCCCchhHhhHHHHHHHHHHHHHHc---CCcEEEeccCceeCCCCCCCCCccHHHHHHHHhCCC
Q 020104          151 --FWSDVD-YIR--KLDSWGKSYAISKTLTERAALEFAEEH---GLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNR  222 (331)
Q Consensus       151 --~~~~~~-~~~--~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  222 (331)
                        ...... ...  ...++..+|+.+|.+.+.+.+.++.++   |++++.+.||.+-.+........  ...........
T Consensus       133 ~g~~~~i~s~~~~~~~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~--~~~~~~~~~~~  210 (257)
T d1fjha_         133 AGEEAKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQD--PRYGESIAKFV  210 (257)
T ss_dssp             HTCHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC-----------------------CC
T ss_pred             CCcEEEEeeehhccCCCcchHHHHHHhhhhhccccccccccccccccccccccCCcCChhHHhhcCC--HHHHHHHHhcC
Confidence              000000 000  001112369999999999999887654   79999999999976642211100  00011111111


Q ss_pred             cccccCCCccceeHHHHHHHHHHhhcCCC--CCc-eEEEecc
Q 020104          223 EEYGFLLNTSMVHVDDVARAHIFLLEYPD--AKG-RYICSSH  261 (331)
Q Consensus       223 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~~~  261 (331)
                      .++     ..+...+|++.++.+++....  ..| .+.++|+
T Consensus       211 ~Pl-----gR~g~p~eva~~v~fL~S~~s~~itG~~i~vDGG  247 (257)
T d1fjha_         211 PPM-----GRRAEPSEMASVIAFLMSPAASYVHGAQIVIDGG  247 (257)
T ss_dssp             CST-----TSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred             CCC-----CCCcCHHHHHHHHHHHhCchhCCccCceEEeCCC
Confidence            122     267789999999999997543  345 4556554

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.48  E-value=1.7e-12  Score=110.85  Aligned_cols=174  Identities=7%  Similarity=0.019  Sum_probs=109.9

Q ss_pred             CceEEEec--CcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCc---cc--cccccCCCCCCCcEEEEe----------
Q 020104            5 KGRVCVTG--GTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNS---KD--LSFLKNLPGASERLRIFH----------   67 (331)
Q Consensus         5 ~~~ilVtG--atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~----------   67 (331)
                      .|.+||||  ++..||..+++.|+++|.+|++..++.........   ++  ..................          
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAND   81 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGGG
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhcc
Confidence            46789999  55699999999999999999998775410000000   00  000000000001122222          


Q ss_pred             ----------CCCCCCccHHHHh-------cCccEEEEecccCCC--------CCCChhhHHHHHHHHHHHHHHHHHHhc
Q 020104           68 ----------ADLSHPDGFDAAI-------AGCTGVLHVATPVDF--------EDKEPEEVITQRAINGTLGILKSCLKS  122 (331)
Q Consensus        68 ----------~D~~~~~~~~~~~-------~~~d~Vih~a~~~~~--------~~~~~~~~~~~~n~~~~~~l~~~~~~~  122 (331)
                                +|+.+.+++++++       .++|++||+|+....        ..+++ +..+++|+.++..+++++...
T Consensus        82 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~-~~~~~vn~~~~~~~~k~~~~~  160 (329)
T d1uh5a_          82 IDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGY-LDALSKSSYSLISLCKYFVNI  160 (329)
T ss_dssp             CCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHH-HHHHHHHTHHHHHHHHHHGGG
T ss_pred             cchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhh-hhhcccchhHHHHHHHHHHhh
Confidence                      2555665555554       369999999985432        11223 378889999988888888765


Q ss_pred             -CCccEEEEecccceeecCCCCCCcccCCCCCChhhhhhcCCCCchhHhhHHHHHHHHHHHHHH----cCCcEEEeccCc
Q 020104          123 -GTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEE----HGLDLVTLIPSM  197 (331)
Q Consensus       123 -~~~~~~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~----~~~~~~ilRp~~  197 (331)
                       ..-.++|.+||.......                     +.+...|+.+|...+.+++.++.+    ++++++.|.||.
T Consensus       161 m~~~GsIv~iss~~~~~~~---------------------p~y~~~y~asKaal~~ltr~lA~Ela~~~gIRVNaI~PG~  219 (329)
T d1uh5a_         161 MKPQSSIISLTYHASQKVV---------------------PGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGP  219 (329)
T ss_dssp             EEEEEEEEEEECGGGTSCC---------------------TTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred             cccccccccceeehhcccc---------------------cccchhhhhhhccccccchhhHHHHhcccCcEEEEEecCc
Confidence             113589999886543200                     111346999999999998887754    589999999998


Q ss_pred             eeC
Q 020104          198 VVG  200 (331)
Q Consensus       198 v~G  200 (331)
                      |-.
T Consensus       220 i~T  222 (329)
T d1uh5a_         220 LKS  222 (329)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            754

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.19  E-value=2.2e-12  Score=101.27  Aligned_cols=81  Identities=15%  Similarity=0.126  Sum_probs=65.5

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcccc-ccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDL-SFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      ..+|+|+||||+|.||+.+++.|++.|++|++++|+.     +..+.+ +.+.+    ..++....+|+.|.+++++++.
T Consensus        21 l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~-----~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~   91 (191)
T d1luaa1          21 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL-----DKAQAAADSVNK----RFKVNVTAAETADDASRAEAVK   91 (191)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH-----HHHHHHHHHHHH----HHTCCCEEEECCSHHHHHHHTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch-----HHHHHHHHHHHh----ccchhhhhhhcccHHHHHHHhc
Confidence            3578999999999999999999999999999999997     232222 11111    1345678899999999999999


Q ss_pred             CccEEEEeccc
Q 020104           82 GCTGVLHVATP   92 (331)
Q Consensus        82 ~~d~Vih~a~~   92 (331)
                      ++|+|||+|+.
T Consensus        92 ~iDilin~Ag~  102 (191)
T d1luaa1          92 GAHFVFTAGAI  102 (191)
T ss_dssp             TCSEEEECCCT
T ss_pred             CcCeeeecCcc
Confidence            99999999985

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.63  E-value=2.7e-07  Score=67.57  Aligned_cols=114  Identities=14%  Similarity=0.132  Sum_probs=78.6

Q ss_pred             eEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      ||.|+||+|.+|++++-.|..++  .++.+++.++     .....+ .+.... .......+    ....+..+.++++|
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~-----~~~~a~-Dl~~~~-~~~~~~~~----~~~~~~~~~~~~aD   70 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH-----TPGVAA-DLSHIE-TRATVKGY----LGPEQLPDCLKGCD   70 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS-----HHHHHH-HHTTSS-SSCEEEEE----ESGGGHHHHHTTCS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc-----cchhhH-HHhhhh-hhcCCCeE----EcCCChHHHhCCCC
Confidence            79999999999999999998887  4788888765     222221 221111 11112211    12456678889999


Q ss_pred             EEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Q 020104           85 GVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTS  132 (331)
Q Consensus        85 ~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  132 (331)
                      +||.+||.......+.. +.++.|..-.+.+++.+++++.-..++.+|
T Consensus        71 ivVitag~~~~~g~sR~-~ll~~N~~i~~~i~~~i~~~~p~~iiivvt  117 (144)
T d1mlda1          71 VVVIPAGVPRKPGMTRD-DLFNTNATIVATLTAACAQHCPDAMICIIS  117 (144)
T ss_dssp             EEEECCSCCCCTTCCGG-GGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred             EEEECCCcCCCCCCCcc-hHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence            99999996554444555 889999999999999999997333455444

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=98.47  E-value=2.3e-07  Score=68.19  Aligned_cols=117  Identities=14%  Similarity=0.144  Sum_probs=71.3

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHH
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDA   78 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~   78 (331)
                      |.. +|||.|+|+ |++|+.++..|+.+|  .+|.+++++..+.. .....+.....   .........+|.       +
T Consensus         2 m~~-~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~-g~a~Dl~~a~~---~~~~~~~~~~d~-------~   68 (146)
T d1ez4a1           2 MPN-HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTK-GDALDLEDAQA---FTAPKKIYSGEY-------S   68 (146)
T ss_dssp             BTT-BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHH-HHHHHHHGGGG---GSCCCEEEECCG-------G
T ss_pred             CCC-CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhH-HHHHHHhcccc---ccCCceEeeccH-------H
Confidence            444 468999995 999999999999987  68999998762100 00001111111   112234445553       2


Q ss_pred             HhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEe
Q 020104           79 AIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYT  131 (331)
Q Consensus        79 ~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~  131 (331)
                      .++++|+||.+|+.......+.. +....|..-.+.+++.+++.+.-..++.+
T Consensus        69 ~~~~adivvitag~~~~~g~~r~-~l~~~N~~i~~~~~~~i~~~~p~aivivv  120 (146)
T d1ez4a1          69 DCKDADLVVITAGAPQKPGESRL-DLVNKNLNILSSIVKPVVDSGFDGIFLVA  120 (146)
T ss_dssp             GGTTCSEEEECCCC-----------CHHHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred             HhccccEEEEecccccCCCCCHH-HHHHHHHHHHHHHHHHHhhcCCCcEEEEe
Confidence            35789999999986553333444 78889999999999999998733344433

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.45  E-value=1.2e-06  Score=64.11  Aligned_cols=118  Identities=11%  Similarity=0.009  Sum_probs=75.9

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcc-cCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPE-HRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      |||.|+||+|.+|+.++..|+.++  .++.++++++.... ......+....  .....+++....--.|.    +.+++
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~--~~~~~~~~~~~~~~~d~----~~l~~   74 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDAL--AGTRSDANIYVESDENL----RIIDE   74 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHH--TTSCCCCEEEEEETTCG----GGGTT
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcc--cccccCCccccCCcchH----HHhcc
Confidence            589999999999999999999888  58999988751000 00001111111  11112333322111122    35678


Q ss_pred             ccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEe
Q 020104           83 CTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYT  131 (331)
Q Consensus        83 ~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~  131 (331)
                      +|+||-+||.......+.. +.++.|..-.+.+.+..++.+ .+.++.+
T Consensus        75 aDvVVitAG~~~~~g~sR~-dl~~~Na~iv~~i~~~i~~~~-~~~iivV  121 (145)
T d1hyea1          75 SDVVIITSGVPRKEGMSRM-DLAKTNAKIVGKYAKKIAEIC-DTKIFVI  121 (145)
T ss_dssp             CSEEEECCSCCCCTTCCHH-HHHHHHHHHHHHHHHHHHHHC-CCEEEEC
T ss_pred             ceEEEEecccccCCCCChh-hhhhhhHHHHHHHHHHHhccC-CCeEEEE
Confidence            9999999987554444555 889999999999999999987 4555433

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.42  E-value=2e-06  Score=62.80  Aligned_cols=116  Identities=16%  Similarity=0.109  Sum_probs=75.7

Q ss_pred             ceEEEecCcchhHHHHHHHHH-HC--CCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            6 GRVCVTGGTGFIASWLIMRLL-DH--GYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~-~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      |||.|+|++|.+|++++-.|. +.  ..++.+++..+     ........+.... .......+.    ...+. +.+++
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-----~~~g~a~Dl~h~~-~~~~~~~~~----~~~~~-~~~~~   69 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-----VTPGVAVDLSHIP-TAVKIKGFS----GEDAT-PALEG   69 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-----THHHHHHHHHTSC-SSCEEEEEC----SSCCH-HHHTT
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-----cchhHHHHHHCCc-cccCCcEEE----cCCCc-cccCC
Confidence            589999999999999998875 43  37899888754     1111111121111 112222221    12223 46789


Q ss_pred             ccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecc
Q 020104           83 CTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSS  133 (331)
Q Consensus        83 ~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS  133 (331)
                      .|+||.+||.......+.. +....|..-.+.+.+.+.+.+.-..+|.+|.
T Consensus        70 aDvvvitaG~~~k~g~~R~-dl~~~N~~i~~~v~~~i~~~~p~aivivvtN  119 (145)
T d2cmda1          70 ADVVLISAGVRRKPGMDRS-DLFNVNAGIVKNLVQQVAKTCPKACIGIITN  119 (145)
T ss_dssp             CSEEEECCSCCCCTTCCGG-GGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred             CCEEEECCCccCCCCcchh-hHHHHHHHHHHHHHHHHHhhCCCcEEEEccC
Confidence            9999999997654444555 8899999999999999999873345555543

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.42  E-value=1.5e-07  Score=68.38  Aligned_cols=71  Identities=13%  Similarity=0.068  Sum_probs=57.1

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH-hcCcc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA-IAGCT   84 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d   84 (331)
                      |+|+|.|+ |.+|+.+++.|.+.|++|.++++++     +   ....+.+.    .++.++.||..|++.+.++ ++++|
T Consensus         1 M~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~-----~---~~~~~~~~----~~~~vi~Gd~~~~~~l~~~~i~~a~   67 (132)
T d1lssa_           1 MYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDK-----D---ICKKASAE----IDALVINGDCTKIKTLEDAGIEDAD   67 (132)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCH-----H---HHHHHHHH----CSSEEEESCTTSHHHHHHTTTTTCS
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCcceecCCh-----h---hhhhhhhh----hhhhhccCcccchhhhhhcChhhhh
Confidence            58999997 9999999999999999999999987     2   22222211    2568899999999988887 47899


Q ss_pred             EEEEe
Q 020104           85 GVLHV   89 (331)
Q Consensus        85 ~Vih~   89 (331)
                      .++-+
T Consensus        68 ~vv~~   72 (132)
T d1lssa_          68 MYIAV   72 (132)
T ss_dssp             EEEEC
T ss_pred             hhccc
Confidence            88854

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=98.40  E-value=2.4e-06  Score=62.24  Aligned_cols=114  Identities=8%  Similarity=0.088  Sum_probs=71.4

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      +||.|+|+ |.+|+.++-.|+.++  .++.+++++.+.    .......+..............+|.       +.++++
T Consensus         2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~----~~g~a~Dl~~~~~~~~~~~~~~~~~-------~~~~~a   69 (142)
T d1y6ja1           2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEK----AIGEAMDINHGLPFMGQMSLYAGDY-------SDVKDC   69 (142)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC-------CCHHHHHHTTSCCCTTCEEEC--CG-------GGGTTC
T ss_pred             CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCc----cceeeeeeccCcccCCCeeEeeCcH-------HHhCCC
Confidence            58999996 999999999999987  489999988731    1111111211111223333333322       346789


Q ss_pred             cEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Q 020104           84 TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTS  132 (331)
Q Consensus        84 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  132 (331)
                      |+||-+|+.......+.. +....|..-.+.+++.+++.++-..++.+|
T Consensus        70 divvitag~~~~~~~~r~-~l~~~N~~i~~~i~~~i~~~~p~ai~ivvt  117 (142)
T d1y6ja1          70 DVIVVTAGANRKPGETRL-DLAKKNVMIAKEVTQNIMKYYNHGVILVVS  117 (142)
T ss_dssp             SEEEECCCC------CHH-HHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred             ceEEEecccccCcCcchh-HHhhHHHHHHHHHHHHhhccCCCceEEEec
Confidence            999999986654444555 889999999999999999987333455443

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.33  E-value=2.4e-06  Score=62.79  Aligned_cols=120  Identities=20%  Similarity=0.255  Sum_probs=78.4

Q ss_pred             CCC-CCceEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHH
Q 020104            1 MEE-GKGRVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFD   77 (331)
Q Consensus         1 M~~-~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~   77 (331)
                      |++ ..+||.|+|+ |++|+.++..|+.++  .++.++++++.+.. .....+....  ......+.+...|.       
T Consensus         1 m~~~~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~-g~a~Dl~~~~--~~~~~~~~~~~~d~-------   69 (148)
T d1ldna1           1 MKNNGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAI-GDAMDFNHGK--VFAPKPVDIWHGDY-------   69 (148)
T ss_dssp             CTTTTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHH-HHHHHHHHHT--TSSSSCCEEEECCG-------
T ss_pred             CCCCCCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeecccccc-chhccHhhCc--cccCCCeEEEECCH-------
Confidence            443 3568999996 999999999999887  48999998762110 0001111111  11112344444443       


Q ss_pred             HHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Q 020104           78 AAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTS  132 (331)
Q Consensus        78 ~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  132 (331)
                      +.++++|+||.+|+.......... +....|..-.+.+++.+++++.-..++.+|
T Consensus        70 ~~l~daDvvvitag~~~~~~~~R~-dl~~~N~~i~~~i~~~i~~~~p~a~~ivvt  123 (148)
T d1ldna1          70 DDCRDADLVVICAGANQKPGETRL-DLVDKNIAIFRSIVESVMASGFQGLFLVAT  123 (148)
T ss_dssp             GGTTTCSEEEECCSCCCCTTTCSG-GGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred             HHhccceeEEEecccccccCcchh-HHHHHHHHHHHHHHHHHHhhCCCceEEEec
Confidence            346789999999987654444444 888999999999999999987344555444

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=98.28  E-value=2.7e-06  Score=63.05  Aligned_cols=120  Identities=19%  Similarity=0.068  Sum_probs=74.1

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCC----e-E--EEEecCCCCcccCCcccccccc-C-CCCCCCcEEEEeCCCC
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGY----S-V--TTTVRSELDPEHRNSKDLSFLK-N-LPGASERLRIFHADLS   71 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~----~-V--~~~~r~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~D~~   71 (331)
                      |+.+ +||.|+||+|++|++++-.|++.+.    + +  .++.-+.      ..+....+. + ..........+...  
T Consensus         1 m~~p-~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~--   71 (154)
T d1y7ta1           1 MKAP-VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQ------AMKALEGVVMELEDCAFPLLAGLEAT--   71 (154)
T ss_dssp             CCCC-EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGG------GHHHHHHHHHHHHTTTCTTEEEEEEE--
T ss_pred             CCCC-CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhcccc------chhhHcCchhhhhccccccccccccC--
Confidence            6654 5899999999999999999987642    1 1  1221111      112221110 0 01111233333321  


Q ss_pred             CCccHHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCc-cEEEEec
Q 020104           72 HPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTV-KRVVYTS  132 (331)
Q Consensus        72 ~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~v~~S  132 (331)
                        ....+.++++|+||-+||.......+.. +.+..|+.-.+.+.+.+.+.... ..++.+|
T Consensus        72 --~~~~~~~~~advViitaG~~~~pg~~r~-dl~~~N~~i~~~~~~~i~k~a~~~~~vivvs  130 (154)
T d1y7ta1          72 --DDPKVAFKDADYALLVGAAPRKAGMERR-DLLQVNGKIFTEQGRALAEVAKKDVKVLVVG  130 (154)
T ss_dssp             --SCHHHHTTTCSEEEECCCCCCCTTCCHH-HHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             --CchhhhcccccEEEeecCcCCCCCCcHH-HHHHHHHHHHHHHHHHHHHhCCCCcEEEEec
Confidence              2355788999999999997664444555 88999999999999999986412 3455444

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=98.26  E-value=2.8e-06  Score=61.72  Aligned_cols=115  Identities=12%  Similarity=-0.005  Sum_probs=75.0

Q ss_pred             eEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCc-cccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNS-KDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      ||.|+||+|.+|+.++-.|..++  .++.+++.+...   ... .....+..............+|.   +    .++++
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~---~~~~g~a~Dl~~~~~~~~~~~i~~~~~---~----~~~~a   71 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKE---DDTVGQAADTNHGIAYDSNTRVRQGGY---E----DTAGS   71 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGH---HHHHHHHHHHHHHHTTTCCCEEEECCG---G----GGTTC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcc---cccceeecchhhcccccCCceEeeCCH---H----Hhhhc
Confidence            79999999999999999999987  378888764300   000 01111111001123334444443   2    35689


Q ss_pred             cEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Q 020104           84 TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTS  132 (331)
Q Consensus        84 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  132 (331)
                      |+||-+|+.......+.. +.++.|..-.+.+.+.+++.+.-..++.+|
T Consensus        72 DiVvitaG~~~~~g~~R~-dl~~~N~~I~~~i~~~i~~~~p~~i~ivvt  119 (142)
T d1o6za1          72 DVVVITAGIPRQPGQTRI-DLAGDNAPIMEDIQSSLDEHNDDYISLTTS  119 (142)
T ss_dssp             SEEEECCCCCCCTTCCHH-HHHHHHHHHHHHHHHHHHTTCSCCEEEECC
T ss_pred             CEEEEecccccccCCchh-hHHHHHHHHHHHHHHHHHhcCCCceEEEec
Confidence            999999986554444555 899999999999999999987333444443

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=98.24  E-value=1.6e-06  Score=62.82  Aligned_cols=71  Identities=14%  Similarity=0.106  Sum_probs=56.3

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH-hcCcc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA-IAGCT   84 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d   84 (331)
                      |+++|.|+ |-+|+++++.|.+.|++|++++.++        +..+.+.+     .....+.+|..+++.+.++ +.++|
T Consensus         1 k~~iIiG~-G~~G~~la~~L~~~g~~vvvid~d~--------~~~~~~~~-----~~~~~~~gd~~~~~~l~~a~i~~a~   66 (134)
T d2hmva1           1 KQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINE--------EKVNAYAS-----YATHAVIANATEENELLSLGIRNFE   66 (134)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCCCEEEESCH--------HHHHHTTT-----TCSEEEECCTTCTTHHHHHTGGGCS
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCeEEEecCcH--------HHHHHHHH-----hCCcceeeecccchhhhccCCcccc
Confidence            57889985 9999999999999999999999987        33333222     3457788999999988887 67899


Q ss_pred             EEEEec
Q 020104           85 GVLHVA   90 (331)
Q Consensus        85 ~Vih~a   90 (331)
                      .||-+.
T Consensus        67 ~vi~~~   72 (134)
T d2hmva1          67 YVIVAI   72 (134)
T ss_dssp             EEEECC
T ss_pred             EEEEEc
Confidence            887443

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.24  E-value=8.1e-07  Score=67.88  Aligned_cols=74  Identities=24%  Similarity=0.318  Sum_probs=55.5

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      .|+|+|.|| |++|++++++|.++||+|++++|+.     .....+.   +   ..........+..+.......+...|
T Consensus         2 ~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~~-----~~a~~l~---~---~~~~~~~~~~~~~~~~~~~~~i~~~~   69 (182)
T d1e5qa1           2 TKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTL-----ESAKKLS---A---GVQHSTPISLDVNDDAALDAEVAKHD   69 (182)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHTTTCEEEEEESCH-----HHHHHHH---T---TCTTEEEEECCTTCHHHHHHHHTTSS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCh-----HHHHHHH---h---cccccccccccccchhhhHhhhhccc
Confidence            379999986 9999999999999999999999998     3333322   2   12445555666667677777788889


Q ss_pred             EEEEec
Q 020104           85 GVLHVA   90 (331)
Q Consensus        85 ~Vih~a   90 (331)
                      .++.+.
T Consensus        70 ~~i~~~   75 (182)
T d1e5qa1          70 LVISLI   75 (182)
T ss_dssp             EEEECS
T ss_pred             eeEeec
Confidence            888654

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=98.22  E-value=1.4e-06  Score=64.50  Aligned_cols=122  Identities=14%  Similarity=0.088  Sum_probs=75.2

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA   79 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   79 (331)
                      |..+++||.|+|+ |.+|+.++..|...+ .++.+++.++.... .....+........  ......     .....++.
T Consensus         3 ~~~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~-g~a~Dl~~~~~~~~--~~~~~~-----~~~~~~~~   73 (154)
T d1pzga1           3 LVQRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPE-GKALDLSHVTSVVD--TNVSVR-----AEYSYEAA   73 (154)
T ss_dssp             CCSCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHH-HHHHHHHHHHHHTT--CCCCEE-----EECSHHHH
T ss_pred             cccCCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccch-hHHHHHhhhccccC--CeeEEe-----ccCchhhh
Confidence            4456679999997 999999998888877 48888887762100 00111111100000  010111     11235677


Q ss_pred             hcCccEEEEecccCCCCC-----CChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Q 020104           80 IAGCTGVLHVATPVDFED-----KEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTS  132 (331)
Q Consensus        80 ~~~~d~Vih~a~~~~~~~-----~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  132 (331)
                      ++++|+||-+|+......     .+.. +....|..-.+.+++.+++.+.-..++.+|
T Consensus        74 ~~~adiVvitag~~~~~g~~~~~~tR~-~l~~~n~~iv~~i~~~i~~~~p~aiviivs  130 (154)
T d1pzga1          74 LTGADCVIVTAGLTKVPGKPDSEWSRN-DLLPFNSKIIREIGQNIKKYCPKTFIIVVT  130 (154)
T ss_dssp             HTTCSEEEECCSCSSCTTCCGGGCCGG-GGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred             hcCCCeEEEecccccCCCCCCcccchh-hhhhhhHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            889999999998654221     1334 788999999999999999987333444333

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=98.17  E-value=1.9e-06  Score=62.98  Aligned_cols=113  Identities=12%  Similarity=0.018  Sum_probs=73.7

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCcccc-ccccCC-CCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKDL-SFLKNL-PGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      |||.|+|| |.+|+.++..|+..+  .++.++++++.     ..+.. ..+... ........+...+  |.    +.++
T Consensus         1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~-----~~~~~~~d~~~~~~~~~~~~~i~~~~--~~----~~~~   68 (142)
T d1guza1           1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEG-----IPQGKALDMYESGPVGLFDTKVTGSN--DY----ADTA   68 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSS-----HHHHHHHHHHTTHHHHTCCCEEEEES--CG----GGGT
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccc-----cchhhhhhhhcccchhcccceEEecC--CH----HHhc
Confidence            58999996 999999999999887  58999998872     21111 111111 0001223332211  11    3467


Q ss_pred             CccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEe
Q 020104           82 GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYT  131 (331)
Q Consensus        82 ~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~  131 (331)
                      ++|+||-+||.......+.. +..+.|..-.+.+++.+++.++-..++.+
T Consensus        69 dadvvvitag~~~~~g~~r~-~l~~~N~~i~~~i~~~i~~~~p~aivivv  117 (142)
T d1guza1          69 NSDIVIITAGLPRKPGMTRE-DLLMKNAGIVKEVTDNIMKHSKNPIIIVV  117 (142)
T ss_dssp             TCSEEEECCSCCCCTTCCHH-HHHHHHHHHHHHHHHHHHHHCSSCEEEEC
T ss_pred             CCeEEEEEEecCCCCCCchH-HHHHHHHHHHHHHHHHhhccCCCeEEEEe
Confidence            89999999987554434454 88999999999999999988733344433

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.10  E-value=6e-06  Score=60.01  Aligned_cols=113  Identities=18%  Similarity=0.179  Sum_probs=73.5

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      |||.|+|+ |.+|+.++..|+.++  .++.++++++.+..   .+.+......+ .........+|.       +.++++
T Consensus         1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~---g~~~Dl~~~~~-~~~~~~~~~~~~-------~~~~~a   68 (140)
T d1a5za1           1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAE---GDALDLIHGTP-FTRRANIYAGDY-------ADLKGS   68 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHH---HHHHHHHHHGG-GSCCCEEEECCG-------GGGTTC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeccccccc---chhcccccccc-ccccccccCCcH-------HHhcCC
Confidence            58999996 999999999888876  58999988762110   01111111110 112333333332       246789


Q ss_pred             cEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEe
Q 020104           84 TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYT  131 (331)
Q Consensus        84 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~  131 (331)
                      |+||-+|+.......... +.+..|..-.+.+++.+++.++-..++.+
T Consensus        69 divvitag~~~~~g~~r~-dl~~~N~~I~~~i~~~i~~~~p~aivivv  115 (140)
T d1a5za1          69 DVVIVAAGVPQKPGETRL-QLLGRNARVMKEIARNVSKYAPDSIVIVV  115 (140)
T ss_dssp             SEEEECCCCCCCSSCCHH-HHHHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred             CEEEEecccccCCCcchh-hhhccccchHHHHHHHHHhcCCCcEEEEe
Confidence            999999987654444454 88899999999999999998733344433

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=98.07  E-value=4.7e-06  Score=61.70  Aligned_cols=39  Identities=18%  Similarity=0.411  Sum_probs=36.2

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      |+..++||.|+||.|.+|+.|++.|.+.||+|.+.+|+.
T Consensus         5 ~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2           5 INSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             SCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            566778999999999999999999999999999999887

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=98.05  E-value=2.4e-05  Score=57.83  Aligned_cols=117  Identities=15%  Similarity=0.047  Sum_probs=76.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGY--SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA   81 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   81 (331)
                      +.+||.|+|+ |.+|+.++-.|..+|.  ++.+++++++... .....+...  ............+|.       +.++
T Consensus        19 ~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~-g~alDl~h~--~~~~~~~~~~~~~d~-------~~~~   87 (160)
T d1i0za1          19 PNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLK-GEMMDLQHG--SLFLQTPKIVADKDY-------SVTA   87 (160)
T ss_dssp             CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHH-HHHHHHHHT--GGGCCCSEEEECSSG-------GGGT
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhH-HHHHHHhcc--ccccCCCeEEeccch-------hhcc
Confidence            4569999996 9999999999999984  8999988752100 001111111  000112222223333       2367


Q ss_pred             CccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Q 020104           82 GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTS  132 (331)
Q Consensus        82 ~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  132 (331)
                      +.|+||..|+.......+.. +..+.|..-.+.++..+++.+.-.-++.+|
T Consensus        88 ~adiVVitAg~~~~~g~tR~-~l~~~N~~i~~~i~~~i~~~~p~aiiivvt  137 (160)
T d1i0za1          88 NSKIVVVTAGVRQQEGESRL-NLVQRNVNVFKFIIPQIVKYSPDCIIIVVS  137 (160)
T ss_dssp             TCSEEEECCSCCCCTTCCGG-GGHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             cccEEEEecCCccccCcchH-HHHHHHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            89999999997654444555 888999999999999999987333455444

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=1.4e-05  Score=58.25  Aligned_cols=35  Identities=20%  Similarity=0.241  Sum_probs=27.9

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC----CeEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG----YSVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g----~~V~~~~r~~   39 (331)
                      ||||.|.||||++|+.+++.|+++.    .+++.+.++.
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~   39 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQ   39 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSS
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccc
Confidence            4689999999999999999888763    3566666554

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=98.03  E-value=1.7e-05  Score=57.61  Aligned_cols=114  Identities=12%  Similarity=0.083  Sum_probs=74.7

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCcc-ccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSK-DLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      .||.|+|+ |.+|++++-.|+.++  .++.++++++.     ..+ ....+...............+     ++ +.+++
T Consensus         2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~-----~~~g~a~Dl~~a~~~~~~~~i~~~~-----~~-~~~~d   69 (143)
T d1llda1           2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKE-----RVEAEVLDMQHGSSFYPTVSIDGSD-----DP-EICRD   69 (143)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHH-----HHHHHHHHHHHTGGGSTTCEEEEES-----CG-GGGTT
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccc-----cchhHHHHHHhccccCCCceeecCC-----CH-HHhhC
Confidence            47999996 999999999999887  48999988762     111 111111111111223333221     12 24678


Q ss_pred             ccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Q 020104           83 CTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTS  132 (331)
Q Consensus        83 ~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  132 (331)
                      +|+||-+|+.......+.. +.+..|..-.+.+++.+++.+.-..++.+|
T Consensus        70 aDvVVitaG~~~~~g~~R~-dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt  118 (143)
T d1llda1          70 ADMVVITAGPRQKPGQSRL-ELVGATVNILKAIMPNLVKVAPNAIYMLIT  118 (143)
T ss_dssp             CSEEEECCCCCCCTTCCHH-HHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred             CcEEEEecccccCCCCchh-hhhhhhHHHHHHHHHHHHhhCCCeEEEEeC
Confidence            8999999997664445555 889999999999999999987333444444

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=97.97  E-value=6.8e-05  Score=56.30  Aligned_cols=116  Identities=12%  Similarity=0.027  Sum_probs=73.2

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCC-----C--eEEEEecCCCCcccCCcccccccc-CC-CCCCCcEEEEeCCCCCCccH
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHG-----Y--SVTTTVRSELDPEHRNSKDLSFLK-NL-PGASERLRIFHADLSHPDGF   76 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g-----~--~V~~~~r~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~D~~~~~~~   76 (331)
                      .||.|+||+|.||++++-.|++.+     .  .++.++.+.      ....+..+. ++ ....+....+..    ..+.
T Consensus        25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~------~~~~l~g~~mdl~d~a~~~~~~~~~----~~~~   94 (175)
T d7mdha1          25 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSER------SFQALEGVAMELEDSLYPLLREVSI----GIDP   94 (175)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGG------GHHHHHHHHHHHHTTTCTTEEEEEE----ESCH
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCcc------ccchhcchhhhhcccccccccCccc----cccc
Confidence            379999999999999999998752     2  344444433      111111110 00 011122222211    1235


Q ss_pred             HHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCC-ccEEEEec
Q 020104           77 DAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGT-VKRVVYTS  132 (331)
Q Consensus        77 ~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~S  132 (331)
                      .+.++++|+||-+|+.......... +.+..|..-.+.+.+++.+... -.+++.+|
T Consensus        95 ~~~~~~aDvVvi~ag~~rkpg~tR~-Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~  150 (175)
T d7mdha1          95 YEVFEDVDWALLIGAKPRGPGMERA-ALLDINGQIFADQGKALNAVASKNVKVLVVG  150 (175)
T ss_dssp             HHHTTTCSEEEECCCCCCCTTCCHH-HHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             hhhccCCceEEEeeccCCCCCCcHH-HHHHHHHHHHHHHHHHHHhhCCCCcEEEEec
Confidence            6788999999999987664445555 8999999999999999999641 23555554

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=97.90  E-value=6.9e-06  Score=59.81  Aligned_cols=112  Identities=11%  Similarity=0.046  Sum_probs=66.4

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccCCccc-cccccCCCC-CCCcEEEE-eCCCCCCccHHHHh
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNSKD-LSFLKNLPG-ASERLRIF-HADLSHPDGFDAAI   80 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~-~~D~~~~~~~~~~~   80 (331)
                      ++||.|+|+ |.+|+.++-.|+.++ .++.+++.+++     .... ...+..... ......+. ..|.       +.+
T Consensus         1 r~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~-----~~~~~~~Dl~~~~~~~~~~~~i~~~~d~-------~~~   67 (142)
T d1uxja1           1 RKKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEG-----VPQGKALDLYEASPIEGFDVRVTGTNNY-------ADT   67 (142)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSS-----HHHHHHHHHHTTHHHHTCCCCEEEESCG-------GGG
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccc-----cchhHHHHhhccccccCCCCEEEecCcH-------HHh
Confidence            368999996 999999999998877 48888887762     1111 111111000 00112222 1222       235


Q ss_pred             cCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEE
Q 020104           81 AGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVY  130 (331)
Q Consensus        81 ~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~  130 (331)
                      ++.|+||-+|+.......+.. +.++.|..-.+.+++...+.+.-..++.
T Consensus        68 ~~advvvitag~~~~~~~~r~-dl~~~N~~i~~~i~~~i~k~~p~aiviv  116 (142)
T d1uxja1          68 ANSDVIVVTSGAPRKPGMSRE-DLIKVNADITRACISQAAPLSPNAVIIM  116 (142)
T ss_dssp             TTCSEEEECCSCC----------CHHHHHHHHHHHHHHHGGGCTTCEEEE
T ss_pred             cCCCEEEEeeeccCCcCcchh-HHHhHHHHHHHHHHHHHhccCCCceEEE
Confidence            688999999986553333444 7788999999999999999873334443

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.89  E-value=3.5e-05  Score=55.87  Aligned_cols=115  Identities=12%  Similarity=0.046  Sum_probs=73.2

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEe-CCCCCCccHHHHhcC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH-ADLSHPDGFDAAIAG   82 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~D~~~~~~~~~~~~~   82 (331)
                      |||.|+|+ |.+|++++-.|+.++  .++.++++++.... .....+........  ....... .|.       +.+++
T Consensus         1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~-g~alDl~~~~~~~~--~~~~i~~~~d~-------~~~~~   69 (142)
T d1ojua1           1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAV-GEAMDLAHAAAGID--KYPKIVGGADY-------SLLKG   69 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHH-HHHHHHHHHHHTTT--CCCEEEEESCG-------GGGTT
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhh-HHHHHHhhhccccC--CCCccccCCCH-------HHhcc
Confidence            58999996 999999999998876  57999988762100 00001111111111  1122222 232       35678


Q ss_pred             ccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Q 020104           83 CTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTS  132 (331)
Q Consensus        83 ~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  132 (331)
                      .|+||-.|+.......+.. +....|..-.+.+.+.+++.+.-..++.+|
T Consensus        70 adiVvitag~~~~~g~~r~-~l~~~n~~i~~~i~~~i~~~~p~aivivvt  118 (142)
T d1ojua1          70 SEIIVVTAGLARKPGMTRL-DLAHKNAGIIKDIAKKIVENAPESKILVVT  118 (142)
T ss_dssp             CSEEEECCCCCCCSSCCHH-HHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred             ccEEEEeccccCCCCCchH-HHHHHhhHHHHHHHHHHHhhCCCcEEEEec
Confidence            9999999986654444555 889999999999999999987333444433

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.88  E-value=1.8e-05  Score=57.67  Aligned_cols=115  Identities=14%  Similarity=0.095  Sum_probs=70.3

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      |||.|+|+ |++|+.++-.|+.+|  .++.+++++..+... ....+...  .............|.       +.++++
T Consensus         2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g-~~~Dl~~a--~~~~~~~~~~~~~d~-------~~l~~a   70 (146)
T d1hyha1           2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKA-DQIDFQDA--MANLEAHGNIVINDW-------AALADA   70 (146)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHH-HHHHHHHH--GGGSSSCCEEEESCG-------GGGTTC
T ss_pred             CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhh-HHHhhhcc--ccccCCccceeccCH-------HHhccc
Confidence            68999995 999999999999877  589988887621100 00111111  111112233344442       235789


Q ss_pred             cEEEEecccCCCC----CCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Q 020104           84 TGVLHVATPVDFE----DKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTS  132 (331)
Q Consensus        84 d~Vih~a~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  132 (331)
                      |+||-+||.....    ..+.. +..+.|..-.+.+.+.+++.+.-..+|.+|
T Consensus        71 diVVitaG~~~~~~~~~g~~R~-~l~~~N~~i~~~i~~~i~~~~p~aivivvt  122 (146)
T d1hyha1          71 DVVISTLGNIKLQQDNPTGDRF-AELKFTSSMVQSVGTNLKESGFHGVLVVIS  122 (146)
T ss_dssp             SEEEECCSCGGGTC-------C-TTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             cEEEEeccccccccccCCccHH-HHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence            9999999854311    11223 677889999999999999887333444333

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.86  E-value=2.6e-05  Score=57.61  Aligned_cols=114  Identities=13%  Similarity=0.075  Sum_probs=73.4

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC--CeEEEEecCCCCcccCCc-cccccccC-CCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSELDPEHRNS-KDLSFLKN-LPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      +.||.|+|+ |.+|+.++..|..+|  .++.+++++.+     .. .....+.. .............|.       +.+
T Consensus        19 ~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~-----~a~g~alDl~~~~~~~~~~~~~~~~d~-------~~~   85 (159)
T d2ldxa1          19 RCKITVVGV-GDVGMACAISILLKGLADELALVDADTD-----KLRGEALDLQHGSLFLSTPKIVFGKDY-------NVS   85 (159)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHH-----HHHHHHHHHHHTTTTCSCCEEEEESSG-------GGG
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCch-----hhhccHHHHhCcchhcCCCeEEeccch-------hhh
Confidence            357999995 999999999999887  48999987751     11 11111111 111111222223332       245


Q ss_pred             cCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Q 020104           81 AGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTS  132 (331)
Q Consensus        81 ~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  132 (331)
                      .+.|+||-+|+.......+.. +.++.|..-.+.+...+++.+.-..++.+|
T Consensus        86 ~~adivvitag~~~~~~~~R~-dll~~N~~i~~~i~~~i~~~~p~~ivivvt  136 (159)
T d2ldxa1          86 ANSKLVIITAGARMVSGQTRL-DLLQRNVAIMKAIVPGVIQNSPDCKIIVVT  136 (159)
T ss_dssp             TTEEEEEECCSCCCCTTTCSS-CTTHHHHHHHHHHTTTHHHHSTTCEEEECS
T ss_pred             ccccEEEEecccccCCCCCHH-HHHHHHHHHHHHHHHHHhccCCCeEEEEeC
Confidence            688999999987654444444 778999999999999998887334455444

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.83  E-value=6.1e-06  Score=63.90  Aligned_cols=34  Identities=35%  Similarity=0.486  Sum_probs=32.3

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      |||.|+||+|.+|++|++.|++.||+|.+.+|++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            5899999999999999999999999999999987

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.81  E-value=9.1e-05  Score=54.53  Aligned_cols=117  Identities=17%  Similarity=0.020  Sum_probs=70.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC-----C--eEEEEecCCCCcccCCcccccccc-CC-CCCCCcEEEEeCCCCCCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG-----Y--SVTTTVRSELDPEHRNSKDLSFLK-NL-PGASERLRIFHADLSHPDG   75 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-----~--~V~~~~r~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~D~~~~~~   75 (331)
                      .+||.|+||+|.+|++++-.|++.+     .  +++.++.+.      ...+...+. ++ .........+..    ...
T Consensus         3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~------~~~~~~~l~~~~~~~~~~~~~~~~~----~~~   72 (154)
T d5mdha1           3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITP------MMGVLDGVLMELQDCALPLLKDVIA----TDK   72 (154)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGG------GHHHHHHHHHHHHHTCCTTEEEEEE----ESC
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCcc------chhhhhhhhhhhccccccccccccc----Ccc
Confidence            4699999999999999999998653     1  234443332      212222211 00 001122222221    123


Q ss_pred             HHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCcc-EEEEec
Q 020104           76 FDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVK-RVVYTS  132 (331)
Q Consensus        76 ~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~v~~S  132 (331)
                      ..+.++++|+||-+++.......+.. +.+..|..-.+.+.+.+.+..+.. .++.+|
T Consensus        73 ~~~~~~~~dvVVitag~~~~~g~sr~-dll~~N~~i~k~~~~~i~k~a~~~~~iivvs  129 (154)
T d5mdha1          73 EEIAFKDLDVAILVGSMPRRDGMERK-DLLKANVKIFKCQGAALDKYAKKSVKVIVVG  129 (154)
T ss_dssp             HHHHTTTCSEEEECCSCCCCTTCCTT-TTHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             cccccCCceEEEEecccCCCCCCchh-HHHHHhHHHHHHHHHHHHhhCCCceEEEEec
Confidence            45778899999999987654434444 778999999999999988763123 344444

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.75  E-value=3e-05  Score=58.99  Aligned_cols=79  Identities=15%  Similarity=-0.015  Sum_probs=50.4

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCccE
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTG   85 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~   85 (331)
                      |||.|+|+ |.+|..++..|.++||+|.+++|++     ...+.+..........+..+..........+..+.++++|+
T Consensus         2 k~iaIiGa-G~~G~~~A~~l~~~G~~V~~~~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~   75 (184)
T d1bg6a2           2 KTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDA-----QRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADV   75 (184)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCH-----HHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSE
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCE
Confidence            68999996 9999999999999999999999987     22222221110000001112222222122357788899999


Q ss_pred             EEEec
Q 020104           86 VLHVA   90 (331)
Q Consensus        86 Vih~a   90 (331)
                      ||-+.
T Consensus        76 iii~v   80 (184)
T d1bg6a2          76 ILIVV   80 (184)
T ss_dssp             EEECS
T ss_pred             EEEEE
Confidence            99764

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.74  E-value=3.6e-05  Score=56.30  Aligned_cols=118  Identities=12%  Similarity=0.064  Sum_probs=71.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      +++||-|+|+ |.+|+.++..|..++ .++.++++++.+.. .....+........  ........+      ..+.+++
T Consensus         2 p~~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~-g~a~Dl~~~~~~~~--~~~~v~~~~------~~~~~~~   71 (150)
T d1t2da1           2 PKAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPH-GKALDTSHTNVMAY--SNCKVSGSN------TYDDLAG   71 (150)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHH-HHHHHHHTHHHHHT--CCCCEEEEC------CGGGGTT
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcce-eeecchhhhccccC--CCcEEEecc------cccccCC
Confidence            3568999995 999999998777776 58888888762110 00000111100000  111222211      1234678


Q ss_pred             ccEEEEecccCCC-CC----CChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Q 020104           83 CTGVLHVATPVDF-ED----KEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTS  132 (331)
Q Consensus        83 ~d~Vih~a~~~~~-~~----~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  132 (331)
                      .|+||-+|+.... ..    .+.. +.+..|..-.+.+.+.+++.+.-..++.+|
T Consensus        72 advvvitag~~~~~g~~~~~~~R~-~l~~~N~~iv~~i~~~i~~~~p~aivivvt  125 (150)
T d1t2da1          72 ADVVIVTAGFTKAPGKSDKEWNRD-DLLPLNNKIMIEIGGHIKKNCPNAFIIVVT  125 (150)
T ss_dssp             CSEEEECCSCSSCTTCCSTTCCGG-GGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred             CcEEEEecccccCCCCCccccchh-HHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence            9999999985442 11    1233 778999999999999999987333444443

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=0.00011  Score=50.51  Aligned_cols=67  Identities=13%  Similarity=0.090  Sum_probs=53.1

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--C
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--G   82 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~   82 (331)
                      ..||.|.| +|.+|+-|+....+.|++|++++.++.     .....          -.-+++.+|+.|.+.+.++..  +
T Consensus        11 ~~kigIlG-gGQL~rMla~aA~~lG~~v~v~d~~~~-----~PA~~----------va~~~i~~~~~d~~~l~~~~~~~~   74 (111)
T d1kjqa2          11 ATRVMLLG-SGELGKEVAIECQRLGVEVIAVDRYAD-----APAMH----------VAHRSHVINMLDGDALRRVVELEK   74 (111)
T ss_dssp             CCEEEEES-CSHHHHHHHHHHHTTTCEEEEEESSTT-----CGGGG----------GSSEEEECCTTCHHHHHHHHHHHC
T ss_pred             CCEEEEEe-CCHHHHHHHHHHHHCCCEEEEEcCCCC-----Cchhh----------cCCeEEECCCCCHHHHHHHHHhhC
Confidence            46899999 599999999999999999999998872     21111          122678899999999988774  6


Q ss_pred             ccEEE
Q 020104           83 CTGVL   87 (331)
Q Consensus        83 ~d~Vi   87 (331)
                      +|+|-
T Consensus        75 ~DviT   79 (111)
T d1kjqa2          75 PHYIV   79 (111)
T ss_dssp             CSEEE
T ss_pred             CceEE
Confidence            89996

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.67  E-value=6.8e-05  Score=55.96  Aligned_cols=33  Identities=21%  Similarity=0.296  Sum_probs=31.6

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      |||+|+|+ |.+|+.++..|++.|++|.+++|++
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~   33 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALCKQGHEVQGWLRVP   33 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCCceEEEEcCH
Confidence            58999997 9999999999999999999999988

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.61  E-value=0.00011  Score=53.26  Aligned_cols=35  Identities=23%  Similarity=0.212  Sum_probs=27.6

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC---CeEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG---YSVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~   39 (331)
                      .|+|.|.||||++|+.|++.|.+++   .++..+..+.
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~   39 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAE   39 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecc
Confidence            4689999999999999999998654   3666655443

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.51  E-value=5.1e-05  Score=57.04  Aligned_cols=36  Identities=14%  Similarity=0.135  Sum_probs=33.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      ++.+|||+||+|-+|...++.+...|.+|+++++++
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~   62 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRP   62 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCEEEEEeccccchhhhhhhhcccccccccccccc
Confidence            456899999999999999999999999999999877

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.49  E-value=3.6e-05  Score=57.53  Aligned_cols=33  Identities=24%  Similarity=0.300  Sum_probs=30.6

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      |||.|.| +|.+|+.+++.|.++|++|++++|++
T Consensus         1 MkI~iIG-~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           1 MKIGVVG-LGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEEe-ecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            5899998 59999999999999999999999987

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.49  E-value=4.5e-05  Score=59.07  Aligned_cols=79  Identities=16%  Similarity=0.203  Sum_probs=49.4

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCC--CCCCCcE-EEE-----eCCCCCCccHH
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNL--PGASERL-RIF-----HADLSHPDGFD   77 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~-----~~D~~~~~~~~   77 (331)
                      |||.|.| .||+|..++..|+++|++|++++.+.        +.++.+.+-  +-..+.. +.+     ...+.-..++.
T Consensus         1 MkI~ViG-lG~vGl~~a~~la~~g~~V~g~D~n~--------~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~   71 (202)
T d1mv8a2           1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVSS--------TKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFK   71 (202)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCH--------HHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHH
T ss_pred             CEEEEEC-CCHhHHHHHHHHHhCCCcEEEEeCCH--------HHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHH
Confidence            5899997 79999999999999999999998876        222222110  0000000 000     00111123566


Q ss_pred             HHhcCccEEEEecccC
Q 020104           78 AAIAGCTGVLHVATPV   93 (331)
Q Consensus        78 ~~~~~~d~Vih~a~~~   93 (331)
                      +++.++|+++-|.+..
T Consensus        72 ~~i~~~d~i~i~VpTP   87 (202)
T d1mv8a2          72 KAVLDSDVSFICVGTP   87 (202)
T ss_dssp             HHHHTCSEEEECCCCC
T ss_pred             HHHhhCCEEEEecCcc
Confidence            7778899999988754

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=0.00018  Score=56.29  Aligned_cols=74  Identities=12%  Similarity=0.084  Sum_probs=52.9

Q ss_pred             CCceEEEecC----------------cchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEe
Q 020104            4 GKGRVCVTGG----------------TGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH   67 (331)
Q Consensus         4 ~~~~ilVtGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (331)
                      .+|+||||+|                ||-+|.+|++++..+|++|+++.-...                ...+.++..+.
T Consensus         5 ~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~----------------~~~p~~~~~~~   68 (223)
T d1u7za_           5 KHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVS----------------LPTPPFVKRVD   68 (223)
T ss_dssp             TTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCC----------------CCCCTTEEEEE
T ss_pred             CCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccc----------------cCcccccccce
Confidence            4678999975                699999999999999999999876541                01124566554


Q ss_pred             CCCCCCc----cHHHHhcCccEEEEecccCCC
Q 020104           68 ADLSHPD----GFDAAIAGCTGVLHVATPVDF   95 (331)
Q Consensus        68 ~D~~~~~----~~~~~~~~~d~Vih~a~~~~~   95 (331)
                      ..  +.+    .+.+.+.+.|++|++|+..++
T Consensus        69 ~~--t~~~m~~~~~~~~~~~D~~i~aAAvsDf   98 (223)
T d1u7za_          69 VM--TALEMEAAVNASVQQQNIFIGCAAVADY   98 (223)
T ss_dssp             CC--SHHHHHHHHHHHGGGCSEEEECCBCCSE
T ss_pred             eh--hhHHHHHHHHhhhccceeEeeeechhhh
Confidence            43  333    333445689999999998774

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=97.47  E-value=1.7e-05  Score=60.70  Aligned_cols=79  Identities=15%  Similarity=0.148  Sum_probs=49.9

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      |+||.|.| +|..|++++..|.+.|++|.+.+|++     +..+.+..-..-....++++. .-++.-..++.++++++|
T Consensus         7 m~KI~ViG-aG~wGtAlA~~La~~g~~V~l~~r~~-----~~~~~i~~~~~n~~yl~~~~l-~~~i~~t~~l~~a~~~ad   79 (189)
T d1n1ea2           7 LNKAVVFG-SGAFGTALAMVLSKKCREVCVWHMNE-----EEVRLVNEKRENVLFLKGVQL-ASNITFTSDVEKAYNGAE   79 (189)
T ss_dssp             EEEEEEEC-CSHHHHHHHHHHHTTEEEEEEECSCH-----HHHHHHHHHTBCTTTSTTCBC-CTTEEEESCHHHHHTTCS
T ss_pred             eceEEEEC-CCHHHHHHHHHHHHcCCeEEEEEecH-----HHHHHHhhccccccccccccc-ccccccchhhhhccCCCC
Confidence            46899999 59999999999999999999999987     332222211111111111111 011111245788899999


Q ss_pred             EEEEec
Q 020104           85 GVLHVA   90 (331)
Q Consensus        85 ~Vih~a   90 (331)
                      +||-+.
T Consensus        80 ~iiiav   85 (189)
T d1n1ea2          80 IILFVI   85 (189)
T ss_dssp             CEEECS
T ss_pred             EEEEcC
Confidence            998654

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=4.5e-05  Score=48.59  Aligned_cols=36  Identities=31%  Similarity=0.441  Sum_probs=33.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      +.++|||+||+|-+|...++.+...|++|+++.+++
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~   66 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRE   66 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCH
Confidence            346899999999999999998889999999999987

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=0.0001  Score=55.51  Aligned_cols=74  Identities=12%  Similarity=0.102  Sum_probs=50.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHH---Hh
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDA---AI   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~---~~   80 (331)
                      ++.+|||+||+|-+|...++.+...|.+|+++++++        ++++.++++..    -.+  .|..+.+..+.   ..
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~--------~~~~~~~~~Ga----~~v--i~~~~~~~~~~i~~~t   93 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTE--------EGQKIVLQNGA----HEV--FNHREVNYIDKIKKYV   93 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH--------HHHHHHHHTTC----SEE--EETTSTTHHHHHHHHH
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccccc--------cccccccccCc----ccc--cccccccHHHHhhhhh
Confidence            456899999999999999999999999999999876        33333333321    122  25544432232   22


Q ss_pred             c--CccEEEEecc
Q 020104           81 A--GCTGVLHVAT   91 (331)
Q Consensus        81 ~--~~d~Vih~a~   91 (331)
                      .  ++|+||.+.+
T Consensus        94 ~~~g~d~v~d~~g  106 (174)
T d1yb5a2          94 GEKGIDIIIEMLA  106 (174)
T ss_dssp             CTTCEEEEEESCH
T ss_pred             ccCCceEEeeccc
Confidence            2  5899998765

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.45  E-value=7.2e-05  Score=55.35  Aligned_cols=72  Identities=19%  Similarity=0.167  Sum_probs=52.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      .+++|||+|+ |-+|+.+++.|...|. ++.++.|+.     ++...+...  +     +..     ..+.+++.+.+.+
T Consensus        23 ~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~-----~ka~~l~~~--~-----~~~-----~~~~~~~~~~l~~   84 (159)
T d1gpja2          23 HDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTY-----ERAVELARD--L-----GGE-----AVRFDELVDHLAR   84 (159)
T ss_dssp             TTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSH-----HHHHHHHHH--H-----TCE-----ECCGGGHHHHHHT
T ss_pred             ccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcH-----HHHHHHHHh--h-----hcc-----cccchhHHHHhcc
Confidence            4579999997 9999999999999997 688999986     232222211  1     112     2244678888999


Q ss_pred             ccEEEEecccC
Q 020104           83 CTGVLHVATPV   93 (331)
Q Consensus        83 ~d~Vih~a~~~   93 (331)
                      +|+||.+.+..
T Consensus        85 ~Divi~atss~   95 (159)
T d1gpja2          85 SDVVVSATAAP   95 (159)
T ss_dssp             CSEEEECCSSS
T ss_pred             CCEEEEecCCC
Confidence            99999998743

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=97.43  E-value=0.00013  Score=55.40  Aligned_cols=74  Identities=16%  Similarity=0.227  Sum_probs=50.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHH---Hh
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDA---AI   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~---~~   80 (331)
                      ++.+|||+||+|.+|...++.....|.+|+++++++        ++.+.+++..   .. ..+  |..+....+.   ..
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~--------~~~~~~~~~G---a~-~vi--~~~~~~~~~~~~~~~   94 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSD--------EKIAYLKQIG---FD-AAF--NYKTVNSLEEALKKA   94 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH--------HHHHHHHHTT---CS-EEE--ETTSCSCHHHHHHHH
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCH--------HHHHHHHhhh---hh-hhc--ccccccHHHHHHHHh
Confidence            457899999999999999999999999999999887        3333333321   11 222  2333333333   32


Q ss_pred             --cCccEEEEecc
Q 020104           81 --AGCTGVLHVAT   91 (331)
Q Consensus        81 --~~~d~Vih~a~   91 (331)
                        .++|+||++.+
T Consensus        95 ~~~Gvd~v~D~vG  107 (182)
T d1v3va2          95 SPDGYDCYFDNVG  107 (182)
T ss_dssp             CTTCEEEEEESSC
T ss_pred             hcCCCceeEEecC
Confidence              26999999876

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=5.5e-05  Score=57.49  Aligned_cols=83  Identities=11%  Similarity=0.048  Sum_probs=58.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      ..++|+|+|+ |..|+.++..|.+.|. .++++.|++     +..++...+.+.............|+.+.+++.+.+..
T Consensus        17 ~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (182)
T d1vi2a1          17 KGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRD-----EFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALAS   90 (182)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSS-----TTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHT
T ss_pred             CCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccch-----HHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcc
Confidence            3579999995 8889999999999985 788999987     34333322211000001233456788888888888889


Q ss_pred             ccEEEEeccc
Q 020104           83 CTGVLHVATP   92 (331)
Q Consensus        83 ~d~Vih~a~~   92 (331)
                      +|+|||+...
T Consensus        91 ~diiIN~Tp~  100 (182)
T d1vi2a1          91 ADILTNGTKV  100 (182)
T ss_dssp             CSEEEECSST
T ss_pred             cceeccccCC
Confidence            9999999753

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.38  E-value=9.7e-05  Score=55.41  Aligned_cols=34  Identities=24%  Similarity=0.245  Sum_probs=27.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC-CeEEEEecC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRS   38 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~   38 (331)
                      |+||.|.||||++|+.|++.|.++. .++..+.-+
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~   35 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSR   35 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECS
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeecc
Confidence            5799999999999999999998864 466655433

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.34  E-value=0.00011  Score=54.61  Aligned_cols=66  Identities=17%  Similarity=0.220  Sum_probs=47.4

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      |++|.|.| .|.+|+.+++.|+++||+|.+.+|++     ...+.+.   ..     +       ........+.+..+|
T Consensus         1 M~kIg~IG-lG~MG~~iA~~L~~~g~~v~~~d~~~-----~~~~~~~---~~-----~-------~~~~~~~~e~~~~~d   59 (162)
T d3cuma2           1 MKQIAFIG-LGHMGAPMATNLLKAGYLLNVFDLVQ-----SAVDGLV---AA-----G-------ASAARSARDAVQGAD   59 (162)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSSH-----HHHHHHH---HT-----T-------CEECSSHHHHHTSCS
T ss_pred             CCEEEEEE-EHHHHHHHHHHHHHCCCeEEEEECch-----hhhhhhh---hh-----h-------ccccchhhhhccccC
Confidence            46899998 79999999999999999999999987     2222222   11     1       111234667788889


Q ss_pred             EEEEecc
Q 020104           85 GVLHVAT   91 (331)
Q Consensus        85 ~Vih~a~   91 (331)
                      +|+-+..
T Consensus        60 iii~~v~   66 (162)
T d3cuma2          60 VVISMLP   66 (162)
T ss_dssp             EEEECCS
T ss_pred             eeeeccc
Confidence            8887653

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=97.32  E-value=0.00039  Score=50.21  Aligned_cols=33  Identities=24%  Similarity=0.298  Sum_probs=25.3

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCC----CeEEEEecC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHG----YSVTTTVRS   38 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g----~~V~~~~r~   38 (331)
                      |||.|.||||++|+.|++.|+++.    .++..+..+
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~   37 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTS   37 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESS
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccc
Confidence            589999999999999999988753    345544433

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.32  E-value=0.00014  Score=55.15  Aligned_cols=74  Identities=20%  Similarity=0.135  Sum_probs=50.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCc---cHHHHh
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPD---GFDAAI   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~---~~~~~~   80 (331)
                      ++.+|||+||+|-+|...++.+...|.+|+++++++        ++.+.+++..     ...+ .|..+.+   .+.+..
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~--------~~~~~l~~~G-----a~~v-i~~~~~~~~~~v~~~t   90 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD--------AKREMLSRLG-----VEYV-GDSRSVDFADEILELT   90 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSH--------HHHHHHHTTC-----CSEE-EETTCSTHHHHHHHHT
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeeccc--------cccccccccc-----cccc-ccCCccCHHHHHHHHh
Confidence            356899999999999999999989999999999876        3334444431     1211 2344443   222322


Q ss_pred             --cCccEEEEecc
Q 020104           81 --AGCTGVLHVAT   91 (331)
Q Consensus        81 --~~~d~Vih~a~   91 (331)
                        .++|+||.+.+
T Consensus        91 ~~~g~d~v~d~~g  103 (183)
T d1pqwa_          91 DGYGVDVVLNSLA  103 (183)
T ss_dssp             TTCCEEEEEECCC
T ss_pred             CCCCEEEEEeccc
Confidence              36999999876

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=0.00011  Score=55.48  Aligned_cols=75  Identities=8%  Similarity=-0.014  Sum_probs=51.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH---h
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA---I   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~---~   80 (331)
                      ++.+|+|+||+|.+|..+++.+...|.+|+++++++        ++.+.++++..   . .+  .|..+.+..+++   -
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~--------~k~~~~~~lGa---~-~v--i~~~~~d~~~~v~~~t   93 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTA--------QKAQSALKAGA---W-QV--INYREEDLVERLKEIT   93 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSH--------HHHHHHHHHTC---S-EE--EETTTSCHHHHHHHHT
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccch--------HHHHHHHhcCC---e-EE--EECCCCCHHHHHHHHh
Confidence            356899999999999999999999999999999988        33333333321   1 22  255554322332   2


Q ss_pred             c--CccEEEEeccc
Q 020104           81 A--GCTGVLHVATP   92 (331)
Q Consensus        81 ~--~~d~Vih~a~~   92 (331)
                      .  ++|+|+.+.+.
T Consensus        94 ~g~g~d~v~d~~g~  107 (179)
T d1qora2          94 GGKKVRVVYDSVGR  107 (179)
T ss_dssp             TTCCEEEEEECSCG
T ss_pred             CCCCeEEEEeCccH
Confidence            2  58999988763

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.29  E-value=0.00064  Score=50.67  Aligned_cols=76  Identities=20%  Similarity=0.098  Sum_probs=49.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCC--CCccHHHHh-
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLS--HPDGFDAAI-   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~--~~~~~~~~~-   80 (331)
                      .+.+|+|+| +|-+|...+..+...|.+|+++++++        ++++..+++.   .. ..+..|-.  +...+.+.+ 
T Consensus        26 ~g~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v~~~~--------~r~~~a~~~g---a~-~~~~~~~~~~~~~~~~~~~~   92 (170)
T d1e3ja2          26 LGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSP--------RRLEVAKNCG---AD-VTLVVDPAKEEESSIIERIR   92 (170)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCH--------HHHHHHHHTT---CS-EEEECCTTTSCHHHHHHHHH
T ss_pred             CCCEEEEEc-ccccchhhHhhHhhhcccccccchHH--------HHHHHHHHcC---Cc-EEEeccccccccchhhhhhh
Confidence            356899997 68999999999989999999999887        3333333321   11 22222322  222333333 


Q ss_pred             ----cCccEEEEeccc
Q 020104           81 ----AGCTGVLHVATP   92 (331)
Q Consensus        81 ----~~~d~Vih~a~~   92 (331)
                          .++|+||.+++.
T Consensus        93 ~~~g~g~D~vid~~g~  108 (170)
T d1e3ja2          93 SAIGDLPNVTIDCSGN  108 (170)
T ss_dssp             HHSSSCCSEEEECSCC
T ss_pred             cccccCCceeeecCCC
Confidence                258999998874

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.26  E-value=0.0004  Score=49.01  Aligned_cols=30  Identities=10%  Similarity=0.130  Sum_probs=26.8

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEE
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTT   35 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~   35 (331)
                      |||.|.|++|-+|+.+.+.+.++++++.+.
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~   30 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLK   30 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEE
Confidence            489999999999999999998999987754

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=0.00028  Score=51.77  Aligned_cols=74  Identities=20%  Similarity=0.298  Sum_probs=56.1

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCc-cccccccCCCCCCCcEEEEeCCCCCCccHHHH-hcCc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNS-KDLSFLKNLPGASERLRIFHADLSHPDGFDAA-IAGC   83 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~   83 (331)
                      -.|+|.|. |-+|..+++.|.+.|++|+++..++     +.. .....+.     ..++.++.||..|++.+.++ +.++
T Consensus         4 nHiII~G~-g~~g~~l~~~L~~~~~~v~vId~d~-----~~~~~~~~~~~-----~~~~~vi~Gd~~d~~~L~~a~i~~a   72 (153)
T d1id1a_           4 DHFIVCGH-SILAINTILQLNQRGQNVTVISNLP-----EDDIKQLEQRL-----GDNADVIPGDSNDSSVLKKAGIDRC   72 (153)
T ss_dssp             SCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCC-----HHHHHHHHHHH-----CTTCEEEESCTTSHHHHHHHTTTTC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCEEEEeccc-----hhHHHHHHHhh-----cCCcEEEEccCcchHHHHHhccccC
Confidence            36899995 9999999999999999999998876     211 1111111     14789999999999988776 4678


Q ss_pred             cEEEEec
Q 020104           84 TGVLHVA   90 (331)
Q Consensus        84 d~Vih~a   90 (331)
                      +.||-+.
T Consensus        73 ~~vi~~~   79 (153)
T d1id1a_          73 RAILALS   79 (153)
T ss_dssp             SEEEECS
T ss_pred             CEEEEcc
Confidence            9998553

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.18  E-value=0.00014  Score=53.98  Aligned_cols=65  Identities=18%  Similarity=0.266  Sum_probs=47.2

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCccE
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTG   85 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~   85 (331)
                      |||-|+| .|.+|+.+++.|+++||+|++.+|++     +..+.+.   +.     +...       ..+..++++++|+
T Consensus         1 MkIgiIG-lG~MG~~~A~~L~~~G~~V~~~d~~~-----~~~~~~~---~~-----~~~~-------~~~~~e~~~~~d~   59 (161)
T d1vpda2           1 MKVGFIG-LGIMGKPMSKNLLKAGYSLVVSDRNP-----EAIADVI---AA-----GAET-------ASTAKAIAEQCDV   59 (161)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCH-----HHHHHHH---HT-----TCEE-------CSSHHHHHHHCSE
T ss_pred             CEEEEEe-hhHHHHHHHHHHHHCCCeEEEEeCCc-----chhHHHH---Hh-----hhhh-------cccHHHHHhCCCe
Confidence            4799998 69999999999999999999999987     2322222   11     1111       2346677788999


Q ss_pred             EEEecc
Q 020104           86 VLHVAT   91 (331)
Q Consensus        86 Vih~a~   91 (331)
                      ||-+-.
T Consensus        60 ii~~v~   65 (161)
T d1vpda2          60 IITMLP   65 (161)
T ss_dssp             EEECCS
T ss_pred             EEEEcC
Confidence            997653

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=97.08  E-value=0.00014  Score=55.10  Aligned_cols=33  Identities=18%  Similarity=0.440  Sum_probs=27.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCC-CeEEEEe
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTV   36 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~   36 (331)
                      ++.||.|.|||||.|+.|++.|.++. .++..+.
T Consensus         4 ~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~   37 (183)
T d2cvoa1           4 EEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMT   37 (183)
T ss_dssp             SCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred             CccEEEEECcccHHHHHHHHHHHhCCCceEEEEe
Confidence            35689999999999999999999875 4666554

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.08  E-value=0.00018  Score=54.38  Aligned_cols=79  Identities=16%  Similarity=0.171  Sum_probs=48.9

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCC-CCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPG-ASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      |||.|.|+ |-.|+.++..|+++|++|.+.+|+.     + .+..+.+..... ..-....-..++.-..++.++++++|
T Consensus         1 MkI~ViGa-G~~GtalA~~la~~g~~V~l~~r~~-----~-~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad   73 (180)
T d1txga2           1 MIVSILGA-GAMGSALSVPLVDNGNEVRIWGTEF-----D-TEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAE   73 (180)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCCEEEEECCGG-----G-HHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCS
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCEEEEEEecc-----c-HHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccc
Confidence            58999995 9999999999999999999999864     1 111222111000 00000000111222456788899999


Q ss_pred             EEEEecc
Q 020104           85 GVLHVAT   91 (331)
Q Consensus        85 ~Vih~a~   91 (331)
                      +||.+..
T Consensus        74 ~Ii~avp   80 (180)
T d1txga2          74 VVLLGVS   80 (180)
T ss_dssp             EEEECSC
T ss_pred             hhhcccc
Confidence            9987543

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.04  E-value=0.00045  Score=51.78  Aligned_cols=35  Identities=34%  Similarity=0.528  Sum_probs=32.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      +.+|||+||+|-+|+..++.....|.+|+++++++
T Consensus        32 g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~   66 (176)
T d1xa0a2          32 RGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKA   66 (176)
T ss_dssp             GCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCT
T ss_pred             CCEEEEEeccchHHHHHHHHHHHcCCceEEecCch
Confidence            35799999999999999999999999999999988

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.03  E-value=0.0019  Score=48.46  Aligned_cols=62  Identities=16%  Similarity=0.155  Sum_probs=47.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+++|.|.| .|-||+.+++.|...|.+|++.+|.+.     .                     .+..-..++.++++.+
T Consensus        41 ~gk~vgIiG-~G~IG~~va~~l~~~g~~v~~~d~~~~-----~---------------------~~~~~~~~l~ell~~s   93 (181)
T d1qp8a1          41 QGEKVAVLG-LGEIGTRVGKILAALGAQVRGFSRTPK-----E---------------------GPWRFTNSLEEALREA   93 (181)
T ss_dssp             TTCEEEEES-CSTHHHHHHHHHHHTTCEEEEECSSCC-----C---------------------SSSCCBSCSHHHHTTC
T ss_pred             cCceEEEec-cccccccceeeeecccccccccccccc-----c---------------------cceeeeechhhhhhcc
Confidence            357899999 699999999999999999999988761     0                     0111123578899999


Q ss_pred             cEEEEeccc
Q 020104           84 TGVLHVATP   92 (331)
Q Consensus        84 d~Vih~a~~   92 (331)
                      |+|+.+...
T Consensus        94 Div~~~~pl  102 (181)
T d1qp8a1          94 RAAVCALPL  102 (181)
T ss_dssp             SEEEECCCC
T ss_pred             chhhccccc
Confidence            999977653

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.99  E-value=0.0003  Score=51.54  Aligned_cols=65  Identities=18%  Similarity=0.097  Sum_probs=46.3

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCccE
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTG   85 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~   85 (331)
                      |||.+.| +|.+|+++++.|.+.|++|++..|+.     +..+.+....       ++.       -..+..++++++|+
T Consensus         1 MkIg~IG-~G~mG~al~~~l~~~~~~i~v~~r~~-----~~~~~l~~~~-------g~~-------~~~~~~~~~~~~dv   60 (152)
T d2ahra2           1 MKIGIIG-VGKMASAIIKGLKQTPHELIISGSSL-----ERSKEIAEQL-------ALP-------YAMSHQDLIDQVDL   60 (152)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHTTSSCEEEEECSSH-----HHHHHHHHHH-------TCC-------BCSSHHHHHHTCSE
T ss_pred             CEEEEEe-ccHHHHHHHHHHHhCCCeEEEEcChH-----HhHHhhcccc-------cee-------eechhhhhhhccce
Confidence            5899998 79999999999999999999999987     3333222110       111       11346777889999


Q ss_pred             EEEec
Q 020104           86 VLHVA   90 (331)
Q Consensus        86 Vih~a   90 (331)
                      ||-+.
T Consensus        61 Iilav   65 (152)
T d2ahra2          61 VILGI   65 (152)
T ss_dssp             EEECS
T ss_pred             eeeec
Confidence            98654

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.98  E-value=0.0059  Score=41.76  Aligned_cols=94  Identities=12%  Similarity=0.161  Sum_probs=61.3

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+++|+|+|| |-+|..-++.|++.|.+|++++....       ..+..+.+    ..+++....+..+.     .+.++
T Consensus        11 ~~k~vlVvG~-G~va~~ka~~ll~~ga~v~v~~~~~~-------~~~~~~~~----~~~i~~~~~~~~~~-----dl~~~   73 (113)
T d1pjqa1          11 RDRDCLIVGG-GDVAERKARLLLEAGARLTVNALTFI-------PQFTVWAN----EGMLTLVEGPFDET-----LLDSC   73 (113)
T ss_dssp             BTCEEEEECC-SHHHHHHHHHHHHTTBEEEEEESSCC-------HHHHHHHT----TTSCEEEESSCCGG-----GGTTC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeccCC-------hHHHHHHh----cCCceeeccCCCHH-----HhCCC
Confidence            5689999995 99999999999999999999877651       22222211    14567766555432     35677


Q ss_pred             cEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecc
Q 020104           84 TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSS  133 (331)
Q Consensus        84 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS  133 (331)
                      +.|+.+.+       +..     .    ...+.+.|++.+   .+|++..
T Consensus        74 ~lv~~at~-------d~~-----~----n~~i~~~a~~~~---ilVNv~D  104 (113)
T d1pjqa1          74 WLAIAATD-------DDT-----V----NQRVSDAAESRR---IFCNVVD  104 (113)
T ss_dssp             SEEEECCS-------CHH-----H----HHHHHHHHHHTT---CEEEETT
T ss_pred             cEEeecCC-------CHH-----H----HHHHHHHHHHcC---CEEEeCC
Confidence            88875432       221     1    245777888776   4576554

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.95  E-value=0.0053  Score=40.34  Aligned_cols=71  Identities=14%  Similarity=0.097  Sum_probs=47.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+|+|+|.|. |-.|..+++.|.++|++|++.+.+..      .+....+.      ..+.+..+...     ...+.++
T Consensus         4 ~~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~------~~~~~~~~------~~~~~~~~~~~-----~~~~~~~   65 (93)
T d2jfga1           4 QGKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMT------PPGLDKLP------EAVERHTGSLN-----DEWLMAA   65 (93)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSS------CTTGGGSC------TTSCEEESBCC-----HHHHHHC
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcC------chhHHHHh------hccceeecccc-----hhhhccC
Confidence            4689999997 88999999999999999999988651      11122221      23334444321     2345678


Q ss_pred             cEEEEeccc
Q 020104           84 TGVLHVATP   92 (331)
Q Consensus        84 d~Vih~a~~   92 (331)
                      |.||-.-|.
T Consensus        66 d~vi~SPGi   74 (93)
T d2jfga1          66 DLIVASPGI   74 (93)
T ss_dssp             SEEEECTTS
T ss_pred             CEEEECCCC
Confidence            999975553

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.94  E-value=0.00062  Score=50.66  Aligned_cols=74  Identities=16%  Similarity=0.049  Sum_probs=48.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCC-CCccHHHHhcC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLS-HPDGFDAAIAG   82 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~   82 (331)
                      ++.+|+|+|+ |.+|...++.+...|.+|+++++++     ++.+..+.   +..   . .++  |.. +.+..+....+
T Consensus        27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~-----~k~~~a~~---lGa---~-~~i--~~~~~~~~~~~~~~~   91 (168)
T d1piwa2          27 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSS-----RKREDAMK---MGA---D-HYI--ATLEEGDWGEKYFDT   91 (168)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSS-----TTHHHHHH---HTC---S-EEE--EGGGTSCHHHHSCSC
T ss_pred             CCCEEEEECC-CCcchhHHHHhhhccccccccccch-----hHHHHhhc---cCC---c-EEe--eccchHHHHHhhhcc
Confidence            4568999986 9999999988888899999999988     33333332   211   1 222  222 23333344457


Q ss_pred             ccEEEEeccc
Q 020104           83 CTGVLHVATP   92 (331)
Q Consensus        83 ~d~Vih~a~~   92 (331)
                      +|+++.+.+.
T Consensus        92 ~d~vi~~~~~  101 (168)
T d1piwa2          92 FDLIVVCASS  101 (168)
T ss_dssp             EEEEEECCSC
T ss_pred             cceEEEEecC
Confidence            9999998764

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.93  E-value=0.00038  Score=52.50  Aligned_cols=31  Identities=16%  Similarity=0.282  Sum_probs=26.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHC-CCeEEEE
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDH-GYSVTTT   35 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~   35 (331)
                      |+||.|.|||||+|+.|++.|.++ ..++..+
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l   32 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMTITAL   32 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEE
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCCceEee
Confidence            579999999999999999999997 4676544

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.92  E-value=0.0014  Score=47.73  Aligned_cols=65  Identities=23%  Similarity=0.247  Sum_probs=44.8

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCccE
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTG   85 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~   85 (331)
                      |||-|+| +|.+|+.+++.|+++|++|.+..|++     .........        ++.     +  .+...++++.+|+
T Consensus         1 MkIgiIG-~G~mG~~ia~~l~~~g~~v~~~~~~~-----~~~~~~~~~--------~~~-----~--~~~~~e~~~~~di   59 (152)
T d1i36a2           1 LRVGFIG-FGEVAQTLASRLRSRGVEVVTSLEGR-----SPSTIERAR--------TVG-----V--TETSEEDVYSCPV   59 (152)
T ss_dssp             CEEEEES-CSHHHHHHHHHHHHTTCEEEECCTTC-----CHHHHHHHH--------HHT-----C--EECCHHHHHTSSE
T ss_pred             CEEEEEc-HHHHHHHHHHHHHHCCCeEEEEcCch-----hHHHHHhhh--------ccc-----c--cccHHHHHhhcCe
Confidence            4899998 79999999999999999999888776     222211110        111     1  1234567888999


Q ss_pred             EEEecc
Q 020104           86 VLHVAT   91 (331)
Q Consensus        86 Vih~a~   91 (331)
                      ||-+..
T Consensus        60 Ii~~v~   65 (152)
T d1i36a2          60 VISAVT   65 (152)
T ss_dssp             EEECSC
T ss_pred             EEEEec
Confidence            997653

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.0027  Score=46.61  Aligned_cols=35  Identities=26%  Similarity=0.346  Sum_probs=27.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHC-CCeEEEE-ecC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDH-GYSVTTT-VRS   38 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~-~r~   38 (331)
                      ..+||.|.|++|-+|+.+++.+.+. +.++.+. +|.
T Consensus         3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~   39 (162)
T d1diha1           3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALERE   39 (162)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecc
Confidence            3468999999999999999999876 5676544 344

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=96.84  E-value=0.003  Score=47.20  Aligned_cols=72  Identities=13%  Similarity=0.225  Sum_probs=48.2

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCccE
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTG   85 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~   85 (331)
                      .+|-|+| .|.+|+.|++.|++.||+|++.+|++     ++.+.+..   .........    -....+++.+.+..+|.
T Consensus         3 ~nIg~IG-lG~MG~~mA~~L~~~G~~V~v~dr~~-----~~~~~l~~---~~~~~~~~~----~a~~~~~~~~~~~~~~~   69 (176)
T d2pgda2           3 ADIALIG-LAVMGQNLILNMNDHGFVVCAFNRTV-----SKVDDFLA---NEAKGTKVL----GAHSLEEMVSKLKKPRR   69 (176)
T ss_dssp             BSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSST-----HHHHHHHH---TTTTTSSCE----ECSSHHHHHHHBCSSCE
T ss_pred             CcEEEEe-EhHHHHHHHHHHHHCCCeEEEEcCCH-----HHHHHHHH---hcccccccc----chhhhhhhhhhhcccce
Confidence            5799999 69999999999999999999999998     33322221   110001100    02244566677778898


Q ss_pred             EEEec
Q 020104           86 VLHVA   90 (331)
Q Consensus        86 Vih~a   90 (331)
                      +|-+.
T Consensus        70 ii~~~   74 (176)
T d2pgda2          70 IILLV   74 (176)
T ss_dssp             EEECS
T ss_pred             EEEec
Confidence            88664

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=96.81  E-value=0.00027  Score=52.62  Aligned_cols=43  Identities=30%  Similarity=0.415  Sum_probs=36.0

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFL   53 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~   53 (331)
                      ..|||+||+|-+|...++.....|.+|+++++++     ++.+.++.+
T Consensus        25 ~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~-----~k~~~~~~l   67 (167)
T d1tt7a2          25 GSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNR-----EAADYLKQL   67 (167)
T ss_dssp             CCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSS-----STHHHHHHH
T ss_pred             CEEEEeCCcchHHHHHHHHHHHcCCceEEEecCH-----HHHHHHHhh
Confidence            4699999999999999998888999999999988     454444443

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.77  E-value=0.0013  Score=45.65  Aligned_cols=35  Identities=26%  Similarity=0.269  Sum_probs=32.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      ..++++|.|| |++|-.++..|.+.|.+|+++.|.+
T Consensus        21 ~p~~v~IiGg-G~ig~E~A~~l~~~G~~Vtlve~~~   55 (117)
T d1ebda2          21 VPKSLVVIGG-GYIGIELGTAYANFGTKVTILEGAG   55 (117)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCeEEEECC-CccceeeeeeecccccEEEEEEecc
Confidence            4578999995 9999999999999999999999887

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.74  E-value=0.0012  Score=46.17  Aligned_cols=36  Identities=25%  Similarity=0.194  Sum_probs=32.7

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      ...++++|.|| |+||-.++..|.+.|.+|.++.|.+
T Consensus        21 ~~p~~~vIiG~-G~ig~E~A~~l~~lG~~Vtii~~~~   56 (122)
T d1v59a2          21 EIPKRLTIIGG-GIIGLEMGSVYSRLGSKVTVVEFQP   56 (122)
T ss_dssp             SCCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCCeEEEECC-CchHHHHHHHHHhhCcceeEEEecc
Confidence            34579999995 9999999999999999999999877

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.68  E-value=0.0016  Score=45.27  Aligned_cols=36  Identities=25%  Similarity=0.195  Sum_probs=32.8

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      ...++++|.|| |+||-.++..|.+.|.+|.++.|.+
T Consensus        20 ~~p~~i~IiG~-G~ig~E~A~~l~~~G~~Vtiv~~~~   55 (119)
T d3lada2          20 NVPGKLGVIGA-GVIGLELGSVWARLGAEVTVLEAMD   55 (119)
T ss_dssp             SCCSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCCeEEEECC-ChHHHHHHHHHHHcCCceEEEEeec
Confidence            44578999995 9999999999999999999999887

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.64  E-value=0.0014  Score=45.78  Aligned_cols=36  Identities=31%  Similarity=0.273  Sum_probs=31.8

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      ...++++|.|| |+||-.++..|.+.|.+|.++.|+.
T Consensus        18 ~~P~~vvIIGg-G~iG~E~A~~l~~lG~~Vtii~~~~   53 (122)
T d1h6va2          18 YCPGKTLVVGA-SYVALECAGFLAGIGLDVTVMVRSI   53 (122)
T ss_dssp             SCCCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             cCCCeEEEECC-CccHHHHHHHHhhcCCeEEEEEech
Confidence            34578999995 9999999999999999999998764

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.62  E-value=0.014  Score=40.82  Aligned_cols=87  Identities=15%  Similarity=0.121  Sum_probs=57.4

Q ss_pred             CceEEEecCc---chhHHHHHHHHHHCC-CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh
Q 020104            5 KGRVCVTGGT---GFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI   80 (331)
Q Consensus         5 ~~~ilVtGat---G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   80 (331)
                      .++|.|.|++   |-.|..+.+.|.+.| ++|+.+..+.        ..+          .++. +.-++.|      +-
T Consensus         8 PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~--------~~i----------~G~~-~y~sl~d------lp   62 (129)
T d2csua1           8 PKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKE--------EEV----------QGVK-AYKSVKD------IP   62 (129)
T ss_dssp             CSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSC--------SEE----------TTEE-CBSSTTS------CS
T ss_pred             CCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCc--------ccc----------CCeE-eecchhh------cC
Confidence            4789999998   999999999987765 6898876544        111          1111 1223332      33


Q ss_pred             cCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEeccc
Q 020104           81 AGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSN  134 (331)
Q Consensus        81 ~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~  134 (331)
                      ..+|.++-+...                 ..+..+++.|.+.+ ++.++.+|+.
T Consensus        63 ~~vDlvvi~vp~-----------------~~~~~~~~~~~~~g-~~~~vi~s~G   98 (129)
T d2csua1          63 DEIDLAIIVVPK-----------------RFVKDTLIQCGEKG-VKGVVIITAG   98 (129)
T ss_dssp             SCCSEEEECSCH-----------------HHHHHHHHHHHHHT-CCEEEECCCS
T ss_pred             CCCceEEEecCh-----------------HHhHHHHHHHHHcC-CCEEEEeccc
Confidence            468988854331                 12346788888888 8888888873

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.0014  Score=48.61  Aligned_cols=74  Identities=19%  Similarity=0.139  Sum_probs=49.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      ++.+|+|.|+ |-+|...++.+...|.++++++++.     ++   ++..+++..   . .+  .|..+.........++
T Consensus        30 ~G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~~-----~~---~~~a~~lGa---d-~~--i~~~~~~~~~~~~~~~   94 (168)
T d1uufa2          30 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSE-----AK---REAAKALGA---D-EV--VNSRNADEMAAHLKSF   94 (168)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSG-----GG---HHHHHHHTC---S-EE--EETTCHHHHHTTTTCE
T ss_pred             CCCEEEEecc-chHHHHHHHHhhcccccchhhccch-----hH---HHHHhccCC---c-EE--EECchhhHHHHhcCCC
Confidence            4568999986 8899999999988999999888877     22   222222211   1 11  2444444444445689


Q ss_pred             cEEEEeccc
Q 020104           84 TGVLHVATP   92 (331)
Q Consensus        84 d~Vih~a~~   92 (331)
                      |++|.+.+.
T Consensus        95 D~vid~~g~  103 (168)
T d1uufa2          95 DFILNTVAA  103 (168)
T ss_dssp             EEEEECCSS
T ss_pred             ceeeeeeec
Confidence            999999874

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=96.61  E-value=0.00064  Score=51.02  Aligned_cols=34  Identities=32%  Similarity=0.472  Sum_probs=32.1

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      .+|||+||+|-+|+..++.....|.+|++++|++
T Consensus        33 ~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~   66 (177)
T d1o89a2          33 GEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRE   66 (177)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CcEEEEEccccchHHHHHHHHHcCCCeEEEecch
Confidence            3799999999999999999999999999999988

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.59  E-value=0.0018  Score=45.10  Aligned_cols=34  Identities=24%  Similarity=0.321  Sum_probs=31.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      .++|+|.|| |++|-.++..|.+.|.+|+++.|.+
T Consensus        30 ~~~vvIIGg-G~iG~E~A~~l~~~g~~Vtli~~~~   63 (121)
T d1d7ya2          30 QSRLLIVGG-GVIGLELAATARTAGVHVSLVETQP   63 (121)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCeEEEECc-chhHHHHHHHhhcccceEEEEeecc
Confidence            478999995 9999999999999999999999987

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.53  E-value=0.0036  Score=47.25  Aligned_cols=65  Identities=11%  Similarity=-0.038  Sum_probs=47.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      ..++|.|.| .|.||+.+++.|...|.+|+..++...     ...            ...       ....++.++++..
T Consensus        43 ~~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~~-----~~~------------~~~-------~~~~~l~ell~~s   97 (188)
T d1sc6a1          43 RGKKLGIIG-YGHIGTQLGILAESLGMYVYFYDIENK-----LPL------------GNA-------TQVQHLSDLLNMS   97 (188)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCC-----CCC------------TTC-------EECSCHHHHHHHC
T ss_pred             cceEEEEee-cccchhhhhhhcccccceEeecccccc-----chh------------hhh-------hhhhhHHHHHhhc
Confidence            357899998 799999999999999999999987651     000            000       1113677888888


Q ss_pred             cEEEEecccC
Q 020104           84 TGVLHVATPV   93 (331)
Q Consensus        84 d~Vih~a~~~   93 (331)
                      |+|+-+....
T Consensus        98 Dii~i~~plt  107 (188)
T d1sc6a1          98 DVVSLHVPEN  107 (188)
T ss_dssp             SEEEECCCSS
T ss_pred             cceeecccCC
Confidence            9888776543

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.0031  Score=46.81  Aligned_cols=76  Identities=17%  Similarity=0.122  Sum_probs=49.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI--   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~--   80 (331)
                      ++.+|+|+|+ |-+|...+..+...|. +|+++++++        ++++..+++..    -..+..+-.+..+..+.+  
T Consensus        26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~--------~rl~~a~~~Ga----~~~~~~~~~~~~~~~~~~~~   92 (171)
T d1pl8a2          26 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSA--------TRLSKAKEIGA----DLVLQISKESPQEIARKVEG   92 (171)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCH--------HHHHHHHHTTC----SEEEECSSCCHHHHHHHHHH
T ss_pred             CCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCH--------HHHHHHHHhCC----cccccccccccccccccccc
Confidence            3468999986 9999999999999997 799988887        34443333311    122333333444344433  


Q ss_pred             ---cCccEEEEeccc
Q 020104           81 ---AGCTGVLHVATP   92 (331)
Q Consensus        81 ---~~~d~Vih~a~~   92 (331)
                         .++|+||.+.+.
T Consensus        93 ~~g~g~Dvvid~~G~  107 (171)
T d1pl8a2          93 QLGCKPEVTIECTGA  107 (171)
T ss_dssp             HHTSCCSEEEECSCC
T ss_pred             cCCCCceEEEeccCC
Confidence               268999998773

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.46  E-value=0.0023  Score=48.06  Aligned_cols=35  Identities=17%  Similarity=0.199  Sum_probs=30.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   39 (331)
                      .+.+|||+|+ |-+|...+..+...|. +|+++++++
T Consensus        28 ~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          28 AGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSP   63 (182)
T ss_dssp             BTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             CCCEEEEECC-Cccchhheeccccccccccccccccc
Confidence            3468999996 8999999999999997 799999887

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.45  E-value=0.0025  Score=44.02  Aligned_cols=35  Identities=23%  Similarity=0.128  Sum_probs=31.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      ..++|+|.|| |++|-.++..|.+.|.+|.++.|.+
T Consensus        20 ~p~~vvIiGg-G~ig~E~A~~l~~~G~~Vtlve~~~   54 (116)
T d1gesa2          20 LPERVAVVGA-GYIGVELGGVINGLGAKTHLFEMFD   54 (116)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCEEEEECC-ChhhHHHHHHhhccccEEEEEeecc
Confidence            3478999995 9999999999999999999999887

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.45  E-value=0.0016  Score=48.36  Aligned_cols=34  Identities=18%  Similarity=0.288  Sum_probs=29.4

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC--eEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY--SVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~   39 (331)
                      ||+|+|+| +|.+|..+++.|.+.|+  +|++++|++
T Consensus         1 Mk~I~IIG-~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           1 MQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             CCEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCEEEEEc-cCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            46899998 69999999999999985  678887776

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.43  E-value=0.0016  Score=48.42  Aligned_cols=35  Identities=26%  Similarity=0.275  Sum_probs=31.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      .+|+|+|.|+ |..+++++..|.+.|.+|+++.|+.
T Consensus        17 ~~k~vlIlGa-GGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          17 PGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCEEEEECC-cHHHHHHHHHhcccceEEEeccchH
Confidence            4689999995 8889999999999999999999987

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.43  E-value=0.0096  Score=38.61  Aligned_cols=70  Identities=16%  Similarity=0.158  Sum_probs=46.2

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCccE
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTG   85 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~   85 (331)
                      |||.++|-+|-==+.|++.|.++|+.|.+.++...       +..+.|++     .++.+..+.  +++.    +.++|.
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~-------~~t~~L~~-----~Gi~i~~gh--~~~~----i~~~d~   63 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEET-------ERTAYLRK-----LGIPIFVPH--SADN----WYDPDL   63 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCC-------HHHHHHHH-----TTCCEESSC--CTTS----CCCCSE
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCC-------hhHHHHHH-----CCCeEEeee--cccc----cCCCCE
Confidence            58988886554445789999999999999998762       22333433     355555442  2221    257899


Q ss_pred             EEEecccC
Q 020104           86 VLHVATPV   93 (331)
Q Consensus        86 Vih~a~~~   93 (331)
                      ||...+..
T Consensus        64 vV~SsAI~   71 (89)
T d1j6ua1          64 VIKTPAVR   71 (89)
T ss_dssp             EEECTTCC
T ss_pred             EEEecCcC
Confidence            99877753

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.41  E-value=0.0023  Score=44.23  Aligned_cols=34  Identities=24%  Similarity=0.343  Sum_probs=31.5

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      .++|+|.|| |++|-.++..|...|.+|+++.|.+
T Consensus        22 p~~v~IiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGS-GYIAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             CCEEEEECC-chHHHHHHHHHHhccccceeeehhc
Confidence            478999995 9999999999999999999999876

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=96.41  E-value=0.0012  Score=46.59  Aligned_cols=68  Identities=18%  Similarity=0.189  Sum_probs=50.6

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHH-hcCcc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAA-IAGCT   84 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d   84 (331)
                      |.|+|.| .|-+|+.+++.|.  +++|.++..++     ...+.   +..     .++.++.||..+++.+.++ +.+++
T Consensus         1 kHivI~G-~g~~g~~l~~~L~--~~~i~vi~~d~-----~~~~~---~~~-----~~~~~i~Gd~~~~~~L~~a~i~~A~   64 (129)
T d2fy8a1           1 RHVVICG-WSESTLECLRELR--GSEVFVLAEDE-----NVRKK---VLR-----SGANFVHGDPTRVSDLEKANVRGAR   64 (129)
T ss_dssp             CCEEEES-CCHHHHHHHHTSC--GGGEEEEESCT-----THHHH---HHH-----TTCEEEESCTTSHHHHHHTTCTTCS
T ss_pred             CEEEEEC-CCHHHHHHHHHHc--CCCCEEEEcch-----HHHHH---HHh-----cCccccccccCCHHHHHHhhhhcCc
Confidence            4688888 4889999999984  56788888776     22222   211     4788999999999888876 46788


Q ss_pred             EEEEe
Q 020104           85 GVLHV   89 (331)
Q Consensus        85 ~Vih~   89 (331)
                      .+|-+
T Consensus        65 ~vi~~   69 (129)
T d2fy8a1          65 AVIVN   69 (129)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            88854

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.41  E-value=0.0023  Score=50.73  Aligned_cols=38  Identities=34%  Similarity=0.417  Sum_probs=33.5

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      |.+..+||+|+|| |..|...+.+|+++|++|.++.|+.
T Consensus         2 ~~~~~~kVvVIGa-GiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           2 MMHSQKRVVVLGS-GVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CCCCSCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCCcEEEECc-cHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4445578999995 9999999999999999999999875

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=96.38  E-value=0.0058  Score=44.58  Aligned_cols=58  Identities=17%  Similarity=0.170  Sum_probs=47.3

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+|+|+|.|.+..+|+.|+..|.++|..|+.+....                                  ..+.+...++
T Consensus        36 ~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t----------------------------------~~l~~~~~~A   81 (166)
T d1b0aa1          36 FGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT----------------------------------KNLRHHVENA   81 (166)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC----------------------------------SCHHHHHHHC
T ss_pred             ccceEEEEeccccccHHHHHHHHHhhcccccccccc----------------------------------chhHHHHhhh
Confidence            468999999999999999999999999998775443                                  1355667788


Q ss_pred             cEEEEecccCCC
Q 020104           84 TGVLHVATPVDF   95 (331)
Q Consensus        84 d~Vih~a~~~~~   95 (331)
                      |+||.++|....
T Consensus        82 DivI~a~G~p~~   93 (166)
T d1b0aa1          82 DLLIVAVGKPGF   93 (166)
T ss_dssp             SEEEECSCCTTC
T ss_pred             hHhhhhccCccc
Confidence            999999986653

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.37  E-value=0.0031  Score=43.99  Aligned_cols=35  Identities=23%  Similarity=0.217  Sum_probs=31.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      ..++|+|.|| |++|-.++..|.+.|.+|+++.|.+
T Consensus        29 ~~k~vvViGg-G~iG~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          29 EVNNVVVIGS-GYIGIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             TCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCEEEEECC-hHHHHHHHHHhhccceEEEEEEecC
Confidence            3578999995 9999999999999999999998876

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.0018  Score=49.16  Aligned_cols=35  Identities=23%  Similarity=0.274  Sum_probs=32.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      +-+||.|.|| |.+|+.++..++..|++|+++++++
T Consensus         3 ~IkkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~   37 (192)
T d1f0ya2           3 IVKHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTE   37 (192)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             eeEEEEEECc-CHHHHHHHHHHHhCCCcEEEEECCh
Confidence            4579999996 9999999999999999999999987

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.0032  Score=44.06  Aligned_cols=35  Identities=26%  Similarity=0.371  Sum_probs=32.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      ..++++|.|| |++|-.++..|.+.|.+|+++.|++
T Consensus        21 ~pk~vvIvGg-G~iG~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          21 LPGRSVIVGA-GYIAVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCEEEEEcC-CccHHHHHHHHhcCCcEEEEEeecc
Confidence            3478999995 9999999999999999999999987

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.18  E-value=0.0034  Score=46.46  Aligned_cols=75  Identities=12%  Similarity=0.119  Sum_probs=48.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI--   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~--   80 (331)
                      +..+|+|+|++|-+|...+..+...| .+|+++.+++        ++++.++++..   . ..+  |..+.+...+..  
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~--------~~~~~~~~~Ga---~-~~i--~~~~~~~~~~~~~~   92 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE--------EAVEAAKRAGA---D-YVI--NASMQDPLAEIRRI   92 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH--------HHHHHHHHHTC---S-EEE--ETTTSCHHHHHHHH
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccch--------hhHHHHHHcCC---c-eee--ccCCcCHHHHHHHH
Confidence            34689999999999999999998888 4888888776        33333333211   1 222  233333233332  


Q ss_pred             ---cCccEEEEeccc
Q 020104           81 ---AGCTGVLHVATP   92 (331)
Q Consensus        81 ---~~~d~Vih~a~~   92 (331)
                         .++|+||.+++.
T Consensus        93 ~~~~~~d~vid~~g~  107 (170)
T d1jvba2          93 TESKGVDAVIDLNNS  107 (170)
T ss_dssp             TTTSCEEEEEESCCC
T ss_pred             hhcccchhhhccccc
Confidence               258999998763

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.17  E-value=0.0036  Score=43.07  Aligned_cols=35  Identities=26%  Similarity=0.297  Sum_probs=31.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      ..++++|.|| |++|-.++..|.+.|.+|+++.|.+
T Consensus        20 ~p~~vvIiGg-G~~G~E~A~~l~~~g~~Vtlve~~~   54 (115)
T d1lvla2          20 LPQHLVVVGG-GYIGLELGIAYRKLGAQVSVVEARE   54 (115)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCeEEEECC-CHHHHHHHHHHhhcccceEEEeeec
Confidence            4578999995 9999999999999999999998876

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.16  E-value=0.0024  Score=47.46  Aligned_cols=73  Identities=14%  Similarity=0.161  Sum_probs=48.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+++|+|.|+ |..|+.++..|.+.+.+|+++.|+.     +..+.+.....   ....+..+..|-.       .+..+
T Consensus        17 ~~k~vlIlGa-GGaarai~~aL~~~~~~i~I~nR~~-----~~a~~l~~~~~---~~~~~~~~~~~~~-------~~~~~   80 (171)
T d1p77a1          17 PNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTF-----SKTKELAERFQ---PYGNIQAVSMDSI-------PLQTY   80 (171)
T ss_dssp             TTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSH-----HHHHHHHHHHG---GGSCEEEEEGGGC-------CCSCC
T ss_pred             CCCEEEEECC-cHHHHHHHHHHcccCceeeeccchH-----HHHHHHHHHHh---hccccchhhhccc-------ccccc
Confidence            4578999995 7789999999998888999999987     33333322111   1123444444322       13578


Q ss_pred             cEEEEeccc
Q 020104           84 TGVLHVATP   92 (331)
Q Consensus        84 d~Vih~a~~   92 (331)
                      |+|||+...
T Consensus        81 diiIN~tp~   89 (171)
T d1p77a1          81 DLVINATSA   89 (171)
T ss_dssp             SEEEECCCC
T ss_pred             ceeeecccc
Confidence            999999754

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=96.15  E-value=0.035  Score=36.40  Aligned_cols=71  Identities=17%  Similarity=0.153  Sum_probs=46.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      ..++|.+.|.+|-==+.|++.|.++|++|.+.++...       ...+.+.+     .++.+..++-.+      .+.++
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~-------~~~~~L~~-----~Gi~v~~g~~~~------~i~~~   68 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG-------VVTQRLAQ-----AGAKIYIGHAEE------HIEGA   68 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS-------HHHHHHHH-----TTCEEEESCCGG------GGTTC
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCC-------hhhhHHHH-----CCCeEEECCccc------cCCCC
Confidence            3468988886443337889999999999999998751       22233332     356665554321      23578


Q ss_pred             cEEEEeccc
Q 020104           84 TGVLHVATP   92 (331)
Q Consensus        84 d~Vih~a~~   92 (331)
                      |.||...|.
T Consensus        69 d~vV~S~AI   77 (96)
T d1p3da1          69 SVVVVSSAI   77 (96)
T ss_dssp             SEEEECTTS
T ss_pred             CEEEECCCc
Confidence            999987664

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.12  E-value=0.0034  Score=43.82  Aligned_cols=35  Identities=20%  Similarity=0.119  Sum_probs=32.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      ..++++|.|| |++|-.++..|.+.|.+|+++.|++
T Consensus        24 ~p~~~viiG~-G~iglE~A~~~~~~G~~Vtvi~~~~   58 (123)
T d1dxla2          24 IPKKLVVIGA-GYIGLEMGSVWGRIGSEVTVVEFAS   58 (123)
T ss_dssp             CCSEEEESCC-SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             cCCeEEEEcc-chHHHHHHHHHHhcCCeEEEEEEcc
Confidence            4578999995 9999999999999999999999987

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.11  E-value=0.0024  Score=47.74  Aligned_cols=33  Identities=24%  Similarity=0.401  Sum_probs=31.1

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      |||-|+| .|.+|.++++.|+++||+|++.+|++
T Consensus         2 MkIGvIG-lG~MG~~ma~~L~~~G~~V~~~dr~~   34 (178)
T d1pgja2           2 MDVGVVG-LGVMGANLALNIAEKGFKVAVFNRTY   34 (178)
T ss_dssp             BSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEEe-ehHHHHHHHHHHHHCCCeEEEEECCH
Confidence            5799998 79999999999999999999999987

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=96.11  E-value=0.0042  Score=43.44  Aligned_cols=36  Identities=19%  Similarity=0.246  Sum_probs=32.4

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      ...++++|.|| |+||-.++..|.+.|.+|+++.|.+
T Consensus        24 ~~p~~vvIiGg-G~IG~E~A~~~~~~G~~Vtive~~~   59 (125)
T d1ojta2          24 EVPGKLLIIGG-GIIGLEMGTVYSTLGSRLDVVEMMD   59 (125)
T ss_dssp             CCCSEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             ccCCeEEEECC-CHHHHHHHHHhhcCCCEEEEEEeec
Confidence            34578999995 9999999999999999999998876

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.013  Score=42.97  Aligned_cols=58  Identities=14%  Similarity=0.104  Sum_probs=47.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+|+|.|.|.+.-+|+.|+..|+++|..|..+....                                  ..+.+...+.
T Consensus        38 ~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t----------------------------------~~l~~~~~~a   83 (170)
T d1a4ia1          38 AGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT----------------------------------AHLDEEVNKG   83 (170)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC----------------------------------SSHHHHHTTC
T ss_pred             ccceEEEEecCCccchHHHHHHHhccCceEEEeccc----------------------------------ccHHHHHhhc
Confidence            468999999999999999999999999999876654                                  1245667788


Q ss_pred             cEEEEecccCCC
Q 020104           84 TGVLHVATPVDF   95 (331)
Q Consensus        84 d~Vih~a~~~~~   95 (331)
                      |+||.+++..+.
T Consensus        84 Divi~a~G~~~~   95 (170)
T d1a4ia1          84 DILVVATGQPEM   95 (170)
T ss_dssp             SEEEECCCCTTC
T ss_pred             cchhhccccccc
Confidence            999988886553

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.10  E-value=0.0034  Score=43.73  Aligned_cols=33  Identities=36%  Similarity=0.576  Sum_probs=30.5

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      ++++|.|| |++|-.++..|.+.|.+|+++.|.+
T Consensus        33 ~~vvIiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          33 GEAIIIGG-GFIGLELAGNLAEAGYHVKLIHRGA   65 (122)
T ss_dssp             SEEEEEEC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CcEEEECC-cHHHHHHHHHhhcccceEEEEeccc
Confidence            57999995 9999999999999999999998876

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.00  E-value=0.0032  Score=45.89  Aligned_cols=24  Identities=29%  Similarity=0.408  Sum_probs=21.8

Q ss_pred             eEEEecCcchhHHHHHHHHHHCCC
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHGY   30 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~   30 (331)
                      ||.|.|||||+|..|++.|.++.+
T Consensus         3 kVaIvGATGyvG~eLirlL~~H~f   26 (154)
T d2gz1a1           3 TVAVVGATGAVGAQMIKMLEESTL   26 (154)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCCS
T ss_pred             EEEEECCCcHHHHHHHHHHHcCCC
Confidence            799999999999999999988754

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=95.97  E-value=0.0022  Score=48.62  Aligned_cols=35  Identities=14%  Similarity=0.145  Sum_probs=31.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      .+++|.|.| .|-||+.+++.|...|.+|.+.++..
T Consensus        48 ~gktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~   82 (193)
T d1mx3a1          48 RGETLGIIG-LGRVGQAVALRAKAFGFNVLFYDPYL   82 (193)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred             eCceEEEec-cccccccceeeeeccccceeeccCcc
Confidence            357899999 69999999999999999999998865

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.96  E-value=0.056  Score=37.86  Aligned_cols=29  Identities=17%  Similarity=0.328  Sum_probs=24.3

Q ss_pred             eEEEecCcchhHHHHHHHHHHC-CCeEEEE
Q 020104            7 RVCVTGGTGFIASWLIMRLLDH-GYSVTTT   35 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~-g~~V~~~   35 (331)
                      ||.|.|++|-+|+.+++.+.+. ++++.+.
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~   30 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAE   30 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEE
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEE
Confidence            6999999999999999998765 5776643

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.91  E-value=0.0058  Score=43.17  Aligned_cols=34  Identities=24%  Similarity=0.353  Sum_probs=31.6

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      .++|+|.|| |++|-.++..|.+.|.+|.++.+.+
T Consensus        35 ~k~v~VIGg-G~iG~E~A~~l~~~g~~Vtvie~~~   68 (133)
T d1q1ra2          35 DNRLVVIGG-GYIGLEVAATAIKANMHVTLLDTAA   68 (133)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCEEEEECC-chHHHHHHHHHHhhCcceeeeeecc
Confidence            578999995 9999999999999999999999887

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=95.85  E-value=0.003  Score=47.97  Aligned_cols=64  Identities=17%  Similarity=0.046  Sum_probs=46.6

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      +++|.|.| .|.||+.+++.|..-|.+|++.++...     .....                  +.....++.++++.+|
T Consensus        43 gk~vgIiG-~G~IG~~va~~l~~fg~~V~~~d~~~~-----~~~~~------------------~~~~~~~l~~~l~~sD   98 (197)
T d1j4aa1          43 DQVVGVVG-TGHIGQVFMQIMEGFGAKVITYDIFRN-----PELEK------------------KGYYVDSLDDLYKQAD   98 (197)
T ss_dssp             GSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCC-----HHHHH------------------TTCBCSCHHHHHHHCS
T ss_pred             CCeEEEec-ccccchhHHHhHhhhcccccccCcccc-----ccccc------------------ceeeeccccccccccc
Confidence            57899999 799999999999999999999877651     10000                  1112345778888889


Q ss_pred             EEEEeccc
Q 020104           85 GVLHVATP   92 (331)
Q Consensus        85 ~Vih~a~~   92 (331)
                      +|+.+...
T Consensus        99 ii~~~~pl  106 (197)
T d1j4aa1          99 VISLHVPD  106 (197)
T ss_dssp             EEEECSCC
T ss_pred             cccccCCc
Confidence            88876653

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=95.79  E-value=0.0024  Score=48.38  Aligned_cols=35  Identities=11%  Similarity=0.150  Sum_probs=30.3

Q ss_pred             CceEEE-ecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            5 KGRVCV-TGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilV-tGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      +.+++| +||+|-+|...++.....|.+|++++|++
T Consensus        29 g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~   64 (189)
T d1gu7a2          29 GKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDR   64 (189)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCC
T ss_pred             CCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecc
Confidence            346666 69999999999999888999999999887

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=95.73  E-value=0.0049  Score=44.72  Aligned_cols=33  Identities=24%  Similarity=0.327  Sum_probs=29.8

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSE   39 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~   39 (331)
                      |||.+.| +|.+|+++++.|++.| ++|++.+|++
T Consensus         1 MkI~fIG-~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           1 MNVYFLG-GGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             CEEEEEc-CcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            5899998 5999999999999887 9999999987

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=95.70  E-value=0.0016  Score=47.62  Aligned_cols=76  Identities=17%  Similarity=0.208  Sum_probs=55.3

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      .-+|+|.|+ |-.|..-++.....|.+|.+++++.     +..+.++....     ..++..   ..+.+.+.+.+.++|
T Consensus        32 pa~V~ViGa-GvaG~~A~~~A~~lGA~V~~~D~~~-----~~l~~l~~~~~-----~~~~~~---~~~~~~l~~~~~~aD   97 (168)
T d1pjca1          32 PGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINV-----ERLSYLETLFG-----SRVELL---YSNSAEIETAVAEAD   97 (168)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHG-----GGSEEE---ECCHHHHHHHHHTCS
T ss_pred             CcEEEEECC-ChHHHHHHHHHhhCCCEEEEEeCcH-----HHHHHHHHhhc-----ccceee---hhhhhhHHHhhccCc
Confidence            358999995 9999999999999999999999987     33333322211     233333   335567888899999


Q ss_pred             EEEEecccCC
Q 020104           85 GVLHVATPVD   94 (331)
Q Consensus        85 ~Vih~a~~~~   94 (331)
                      +||.++-...
T Consensus        98 ivI~aalipG  107 (168)
T d1pjca1          98 LLIGAVLVPG  107 (168)
T ss_dssp             EEEECCCCTT
T ss_pred             EEEEeeecCC
Confidence            9999886543

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=95.58  E-value=0.0045  Score=46.77  Aligned_cols=67  Identities=15%  Similarity=0.072  Sum_probs=46.3

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      ++++.|.| .|.||+.+++.+...|.+|.+.++...     .......               ......+++.++++.+|
T Consensus        47 g~tvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~-----~~~~~~~---------------~~~~~~~~l~~ll~~sD  105 (191)
T d1gdha1          47 NKTLGIYG-FGSIGQALAKRAQGFDMDIDYFDTHRA-----SSSDEAS---------------YQATFHDSLDSLLSVSQ  105 (191)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSCC-----CHHHHHH---------------HTCEECSSHHHHHHHCS
T ss_pred             ccceEEee-cccchHHHHHHHHhhcccccccccccc-----ccchhhc---------------ccccccCCHHHHHhhCC
Confidence            57899999 699999999999999999999987651     1111100               00112345778888888


Q ss_pred             EEEEeccc
Q 020104           85 GVLHVATP   92 (331)
Q Consensus        85 ~Vih~a~~   92 (331)
                      +|+-+...
T Consensus       106 ~v~l~~pl  113 (191)
T d1gdha1         106 FFSLNAPS  113 (191)
T ss_dssp             EEEECCCC
T ss_pred             eEEecCCC
Confidence            88765543

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=95.58  E-value=0.063  Score=39.29  Aligned_cols=32  Identities=13%  Similarity=0.160  Sum_probs=25.6

Q ss_pred             CceEEEecCcchhHHHHHHHHHHC-CCeEEEEec
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDH-GYSVTTTVR   37 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r   37 (331)
                      ++||.|.| +|++|+.+++.|.+. +.++.++..
T Consensus         3 kirvgiiG-~G~ig~~~~~~l~~~~~~elvav~~   35 (170)
T d1f06a1           3 NIRVAIVG-YGNLGRSVEKLIAKQPDMDLVGIFS   35 (170)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHTTCSSEEEEEEEE
T ss_pred             cceEEEEC-ChHHHHHHHHHHHhCCCcEEEEEEe
Confidence            36899999 699999999999875 577765543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.58  E-value=0.015  Score=43.14  Aligned_cols=35  Identities=17%  Similarity=0.082  Sum_probs=29.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~   39 (331)
                      ++.+|+|.|+ |-+|...+..+...| .+|+++++++
T Consensus        28 ~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~   63 (176)
T d2jhfa2          28 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINK   63 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcH
Confidence            3468999998 558999999999887 5888888887

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.012  Score=42.78  Aligned_cols=67  Identities=15%  Similarity=0.035  Sum_probs=48.3

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+|++.|.| .|.+|+.+++.|...|.+|.++.+++.          +.++..           .|-.....+.+++...
T Consensus        23 ~Gk~v~V~G-yG~iG~g~A~~~rg~G~~V~v~e~dp~----------~al~A~-----------~dG~~v~~~~~a~~~a   80 (163)
T d1li4a1          23 AGKVAVVAG-YGDVGKGCAQALRGFGARVIITEIDPI----------NALQAA-----------MEGYEVTTMDEACQEG   80 (163)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHH----------HHHHHH-----------HTTCEECCHHHHTTTC
T ss_pred             cCCEEEEec-cccccHHHHHHHHhCCCeeEeeecccc----------hhHHhh-----------cCceEeeehhhhhhhc
Confidence            467899999 899999999999999999999988771          111111           1111223466777788


Q ss_pred             cEEEEeccc
Q 020104           84 TGVLHVATP   92 (331)
Q Consensus        84 d~Vih~a~~   92 (331)
                      |++|-+.+.
T Consensus        81 divvtaTGn   89 (163)
T d1li4a1          81 NIFVTTTGC   89 (163)
T ss_dssp             SEEEECSSC
T ss_pred             cEEEecCCC
Confidence            888877664

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.56  E-value=0.0068  Score=45.63  Aligned_cols=34  Identities=18%  Similarity=0.049  Sum_probs=27.6

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEE-EecCC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTT-TVRSE   39 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~-~~r~~   39 (331)
                      .+|||+||+|-+|+..++.....|.++++ +++++
T Consensus        32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~   66 (187)
T d1vj1a2          32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQ   66 (187)
T ss_dssp             CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSH
T ss_pred             CEEEEECCCchhhHHHHHHHHHcCCcceecccchH
Confidence            57999999999999999998888976544 44443

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.50  E-value=0.01  Score=40.93  Aligned_cols=35  Identities=26%  Similarity=0.162  Sum_probs=31.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      +.++|+|.|| |++|-.++..|.+.|.+|.++.|.+
T Consensus        21 ~~~~vvVvGg-G~ig~E~A~~l~~~g~~vt~i~~~~   55 (121)
T d1mo9a2          21 PGSTVVVVGG-SKTAVEYGCFFNATGRRTVMLVRTE   55 (121)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcchhheEeeccc
Confidence            3578999995 9999999999999999999999876

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.48  E-value=0.0078  Score=45.22  Aligned_cols=34  Identities=15%  Similarity=0.219  Sum_probs=31.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      -+||.|.|+ |.+|+.++..++..|++|+++++++
T Consensus         4 I~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           4 VKQAAVLGA-GIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             CSSEEEECC-HHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCCeEEEEECCH
Confidence            468999996 9999999999999999999999987

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.48  E-value=0.0071  Score=44.91  Aligned_cols=74  Identities=14%  Similarity=-0.002  Sum_probs=46.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCc---cHHHH
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPD---GFDAA   79 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~---~~~~~   79 (331)
                      ++.+|+|.|+ |-+|...++.+...|. +|+++++++        ++++..+++..    ..+  .|..+..   .+.++
T Consensus        27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~--------~r~~~a~~lGa----~~~--i~~~~~~~~~~v~~~   91 (174)
T d1jqba2          27 MGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRP--------ICVEAAKFYGA----TDI--LNYKNGHIEDQVMKL   91 (174)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCH--------HHHHHHHHHTC----SEE--ECGGGSCHHHHHHHH
T ss_pred             CCCEEEEEcC-Ccchhhhhhhhhcccccccccccchh--------hhHHHHHhhCc----ccc--ccccchhHHHHHHHH
Confidence            4568999985 9999999998888886 799888876        33333322211    122  2333322   23333


Q ss_pred             hc--CccEEEEeccc
Q 020104           80 IA--GCTGVLHVATP   92 (331)
Q Consensus        80 ~~--~~d~Vih~a~~   92 (331)
                      ..  ++|+||.+++.
T Consensus        92 t~g~G~D~vid~~g~  106 (174)
T d1jqba2          92 TNGKGVDRVIMAGGG  106 (174)
T ss_dssp             TTTSCEEEEEECSSC
T ss_pred             hhccCcceEEEccCC
Confidence            32  59999999874

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.43  E-value=0.014  Score=36.63  Aligned_cols=34  Identities=24%  Similarity=0.212  Sum_probs=31.0

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      ||+|.|.| +|.+|+-++..-...|++|++++-++
T Consensus         1 ~k~vgIlG-~GQLgrMl~~Aa~~LG~~v~vldp~~   34 (78)
T d3etja2           1 MKQVCVLG-NGQLGRMLRQAGEPLGIAVWPVGLDA   34 (78)
T ss_dssp             CEEEEEEB-CSHHHHHHHHHHGGGTEEEEEECTTS
T ss_pred             CCEEEEEc-CCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence            47899999 59999999999999999999998776

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.42  E-value=0.017  Score=42.62  Aligned_cols=83  Identities=14%  Similarity=0.028  Sum_probs=50.8

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCC-----CCCcEEEE-------eCCC--C
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPG-----ASERLRIF-------HADL--S   71 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-------~~D~--~   71 (331)
                      -+|+|+|| |-.|.+-++.....|.+|.+++.+.     ...+.++.+....-     .....+..       .-+.  .
T Consensus        30 a~VvViGa-GvaG~~Aa~~A~~lGA~V~v~D~~~-----~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~  103 (183)
T d1l7da1          30 ARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRA-----ATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKK  103 (183)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCS-----TTHHHHHHTTCEECCC-----------------------CC
T ss_pred             cEEEEEcC-cHHHHHHHHHHHHcCCEEEEEeccH-----HHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHH
Confidence            37999996 9999999999999999999999988     44444443321000     00000000       0011  1


Q ss_pred             CCccHHHHhcCccEEEEecccCC
Q 020104           72 HPDGFDAAIAGCTGVLHVATPVD   94 (331)
Q Consensus        72 ~~~~~~~~~~~~d~Vih~a~~~~   94 (331)
                      ..+.+.+.+.++|+||-.+-...
T Consensus       104 ~~~~l~~~l~~aDlVI~talipG  126 (183)
T d1l7da1         104 QAEAVLKELVKTDIAITTALIPG  126 (183)
T ss_dssp             HHHHHHHHHTTCSEEEECCCCTT
T ss_pred             HHHHHHHHHHhhhhheeeeecCC
Confidence            12345566778999998886543

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.34  E-value=0.031  Score=42.12  Aligned_cols=74  Identities=14%  Similarity=-0.002  Sum_probs=46.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCc---cHHHH
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPD---GFDAA   79 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~---~~~~~   79 (331)
                      .+.+|+|.|+ |-+|...+..+...|. +|+++++++        .+++..+++     +...+. |-.+.+   .+.++
T Consensus        25 ~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~--------~rl~~a~~~-----Ga~~~~-~~~~~~~~~~i~~~   89 (195)
T d1kola2          25 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNP--------ARLAHAKAQ-----GFEIAD-LSLDTPLHEQIAAL   89 (195)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCH--------HHHHHHHHT-----TCEEEE-TTSSSCHHHHHHHH
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccc--------hhhHhhhhc-----cccEEE-eCCCcCHHHHHHHH
Confidence            4568999985 9999888887777775 788887776        333333332     333332 222322   23333


Q ss_pred             hc--CccEEEEeccc
Q 020104           80 IA--GCTGVLHVATP   92 (331)
Q Consensus        80 ~~--~~d~Vih~a~~   92 (331)
                      ..  ++|++|.+.+.
T Consensus        90 t~g~g~D~vid~vG~  104 (195)
T d1kola2          90 LGEPEVDCAVDAVGF  104 (195)
T ss_dssp             HSSSCEEEEEECCCT
T ss_pred             hCCCCcEEEEECccc
Confidence            33  68999999874

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=95.33  E-value=0.0014  Score=48.71  Aligned_cols=116  Identities=14%  Similarity=0.066  Sum_probs=64.8

Q ss_pred             CceEEEecCcchhHHH--HHHHHHHC----CCeEEEEecCCCCcccCCcccccc-ccC-CCCCCCcEEEEeCCCCCCccH
Q 020104            5 KGRVCVTGGTGFIASW--LIMRLLDH----GYSVTTTVRSELDPEHRNSKDLSF-LKN-LPGASERLRIFHADLSHPDGF   76 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~--l~~~L~~~----g~~V~~~~r~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~D~~~~~~~   76 (331)
                      .|||.|.|| |.+|..  ++..|+..    +.++.++++++     +..+.... +.. ........++.     ...+.
T Consensus         2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~-----~~~~~~~~~~~~~~~~~~~~~~i~-----~~td~   70 (171)
T d1obba1           2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDE-----ERLDAILTIAKKYVEEVGADLKFE-----KTMNL   70 (171)
T ss_dssp             CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCH-----HHHHHHHHHHHHHHHHTTCCCEEE-----EESCH
T ss_pred             CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCc-----hHHHHHHHHHHHHHHhcCCCeEEE-----EeCCh
Confidence            469999996 888865  34445432    35999999987     22211110 000 00011122222     22357


Q ss_pred             HHHhcCccEEEEecccCCCCCC--------------------------ChhhHHHHHHHHHHHHHHHHHHhcCCccEEEE
Q 020104           77 DAAIAGCTGVLHVATPVDFEDK--------------------------EPEEVITQRAINGTLGILKSCLKSGTVKRVVY  130 (331)
Q Consensus        77 ~~~~~~~d~Vih~a~~~~~~~~--------------------------~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~  130 (331)
                      .+++.++|+||+.++.......                          +.. .....|+.-.+.+++.+++...-..++.
T Consensus        71 ~eaL~dad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~-~~~~rn~~i~~~i~~~i~~~~p~a~~i~  149 (171)
T d1obba1          71 DDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYT-FSNYNQLKYFVDIARKIEKLSPKAWYLQ  149 (171)
T ss_dssp             HHHHTTCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCS-SSCHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             hhcccCCCeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcce-eeecchHHHHHHHHHHHHHHCcCeEEEE
Confidence            7889999999999864321100                          000 0123578888899999988863445554


Q ss_pred             ec
Q 020104          131 TS  132 (331)
Q Consensus       131 ~S  132 (331)
                      +|
T Consensus       150 ~T  151 (171)
T d1obba1         150 AA  151 (171)
T ss_dssp             CS
T ss_pred             EC
Confidence            44

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=95.32  E-value=0.0096  Score=45.21  Aligned_cols=63  Identities=14%  Similarity=0.081  Sum_probs=46.5

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCcc
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCT   84 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d   84 (331)
                      +++|.|.| .|-||+.+++.|..-|.+|++.++...     ...           ...+        +..++.++++.+|
T Consensus        45 ~ktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~-----~~~-----------~~~~--------~~~~l~~l~~~~D   99 (199)
T d1dxya1          45 QQTVGVMG-TGHIGQVAIKLFKGFGAKVIAYDPYPM-----KGD-----------HPDF--------DYVSLEDLFKQSD   99 (199)
T ss_dssp             GSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCC-----SSC-----------CTTC--------EECCHHHHHHHCS
T ss_pred             ceeeeeee-cccccccccccccccceeeeccCCccc-----hhh-----------hcch--------hHHHHHHHHHhcc
Confidence            47899999 699999999999999999999988661     100           0111        1235778888889


Q ss_pred             EEEEeccc
Q 020104           85 GVLHVATP   92 (331)
Q Consensus        85 ~Vih~a~~   92 (331)
                      +|+.+...
T Consensus       100 ~v~~~~pl  107 (199)
T d1dxya1         100 VIDLHVPG  107 (199)
T ss_dssp             EEEECCCC
T ss_pred             cceeeecc
Confidence            88876643

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.31  E-value=0.013  Score=43.35  Aligned_cols=35  Identities=17%  Similarity=0.032  Sum_probs=27.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   39 (331)
                      ++.+|+|.|+ |.+|...++.+...|. .|+++++++
T Consensus        28 ~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~   63 (176)
T d2fzwa2          28 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINK   63 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccH
Confidence            4568999997 5689999999988885 566666655

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.26  E-value=0.022  Score=42.14  Aligned_cols=35  Identities=14%  Similarity=0.060  Sum_probs=29.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   39 (331)
                      ++.+|+|+| +|-||...+..+...|. +|++.++++
T Consensus        28 ~G~~VlV~G-~G~iGl~a~~~ak~~Ga~~Vi~~d~~~   63 (174)
T d1e3ia2          28 PGSTCAVFG-LGCVGLSAIIGCKIAGASRIIAIDING   63 (174)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCCEEEEEC-CChHHHHHHHHHHHhCCceeeeeccch
Confidence            356899998 59999999999999996 677777776

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.22  E-value=0.018  Score=42.12  Aligned_cols=35  Identities=14%  Similarity=0.094  Sum_probs=30.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      +..+|+|.|+ |-+|...+..+...|.+|+++++++
T Consensus        27 ~g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          27 PGQWVAISGI-GGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeec-cccHHHHHHHHHHcCCccceecchh
Confidence            3568999886 9999999998888899999999887

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.14  E-value=0.096  Score=38.34  Aligned_cols=78  Identities=10%  Similarity=0.141  Sum_probs=47.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEe-----------CCCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH-----------ADLS   71 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~D~~   71 (331)
                      |++||.|-| .|-||+.+++.+.+++ .+|.++.-..      .......+...     +...+.           ..+.
T Consensus         1 M~irIaING-fGRIGR~v~Ral~~~~dieiVaINd~~------~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~   68 (172)
T d2czca2           1 MKVKVGVNG-YGTIGKRVAYAVTKQDDMELIGITKTK------PDFEAYRAKEL-----GIPVYAASEEFIPRFEKEGFE   68 (172)
T ss_dssp             CCEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEESS------CSHHHHHHHHT-----TCCEEESSGGGHHHHHHHTCC
T ss_pred             CcEEEEEEC-CCHHHHHHHHHHHhCCCceEEEEecCC------ChHHHHHhhhc-----CceeecccccceeeecccCcc
Confidence            357999999 6999999999998764 6776665322      11111111111     111111           1123


Q ss_pred             CCccHHHHhcCccEEEEecccC
Q 020104           72 HPDGFDAAIAGCTGVLHVATPV   93 (331)
Q Consensus        72 ~~~~~~~~~~~~d~Vih~a~~~   93 (331)
                      ....+..+++++|+||-|.|..
T Consensus        69 ~~~~~~~~~~~vDvViEcTG~f   90 (172)
T d2czca2          69 VAGTLNDLLEKVDIIVDATPGG   90 (172)
T ss_dssp             CSCBHHHHHTTCSEEEECCSTT
T ss_pred             ccchhhhhhccCCEEEECCCCC
Confidence            3346777778999999998753

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=95.11  E-value=0.011  Score=42.35  Aligned_cols=35  Identities=17%  Similarity=0.240  Sum_probs=30.0

Q ss_pred             CceEEEecCcchhHHHHHHHHHHC--CCeEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDH--GYSVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~   39 (331)
                      ||+|.|.|+||-||...++-+.+.  .++|.+++-..
T Consensus         1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~   37 (151)
T d1q0qa2           1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGK   37 (151)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESS
T ss_pred             CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence            578999999999999999999876  47888887554

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.11  E-value=0.02  Score=42.40  Aligned_cols=34  Identities=18%  Similarity=0.096  Sum_probs=30.1

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~   39 (331)
                      +.+|+|+|+ |-+|...+..+...| .+|+++++++
T Consensus        30 g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~   64 (176)
T d1d1ta2          30 GSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNK   64 (176)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcH
Confidence            457999985 999999999999998 5899999888

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.10  E-value=0.099  Score=35.49  Aligned_cols=33  Identities=15%  Similarity=0.372  Sum_probs=28.6

Q ss_pred             ceEEEecCc---chhHHHHHHHHHHCCCeEEEEecC
Q 020104            6 GRVCVTGGT---GFIASWLIMRLLDHGYSVTTTVRS   38 (331)
Q Consensus         6 ~~ilVtGat---G~iG~~l~~~L~~~g~~V~~~~r~   38 (331)
                      |+|.|.|++   +-.|..+.+.|++.||+|+.+..+
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~   37 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPN   37 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTT
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccc
Confidence            689999987   789999999999999998877543

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.91  E-value=0.022  Score=42.17  Aligned_cols=82  Identities=10%  Similarity=0.087  Sum_probs=46.5

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCcccCCccccccccCC---CCCCCcEEE-EeCCCCCCccHHHH
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEHRNSKDLSFLKNL---PGASERLRI-FHADLSHPDGFDAA   79 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~D~~~~~~~~~~   79 (331)
                      |-||.|-| .|.||+.+++.|.+++ .+|+++....+     .......+...   ......... -...+.-...+..+
T Consensus         1 MIKVaING-fGRIGR~v~Ral~~~~dievVaInd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~   74 (178)
T d1b7go1           1 MVNVAVNG-YGTIGKRVADAIIKQPDMKLVGVAKTSP-----NYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDL   74 (178)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEECSSC-----SHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHH
T ss_pred             CeEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEECCCC-----cHHHHHhcccCcceeccCccceeccccceecCCchhhh
Confidence            45899999 7999999999999764 68777754331     11111111100   000001000 01122223456777


Q ss_pred             hcCccEEEEeccc
Q 020104           80 IAGCTGVLHVATP   92 (331)
Q Consensus        80 ~~~~d~Vih~a~~   92 (331)
                      ++++|+||-|.+.
T Consensus        75 ~~~vDiViecTG~   87 (178)
T d1b7go1          75 IKTSDIVVDTTPN   87 (178)
T ss_dssp             HHHCSEEEECCST
T ss_pred             hhcCCEEEECCCC
Confidence            7789999999874

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=94.89  E-value=0.019  Score=42.60  Aligned_cols=35  Identities=20%  Similarity=0.158  Sum_probs=32.3

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      ..|+|+|.|| |.-|-..+..|.++||+|.++.+.+
T Consensus        42 ~~k~V~IIGa-GPAGL~AA~~la~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          42 QKKNLAVVGA-GPAGLAFAINAAARGHQVTLFDAHS   76 (179)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCcEEEEECc-cHHHHHHHHHHHhhccceEEEeccC
Confidence            4679999995 9999999999999999999999876

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=94.88  E-value=0.02  Score=42.26  Aligned_cols=76  Identities=13%  Similarity=0.055  Sum_probs=45.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHh--
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAI--   80 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~--   80 (331)
                      +..+|+|.|+ |.+|...+..+...|. .|+++++++        ++++..+++.    ..+++..+-.+.+.+.+..  
T Consensus        32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~--------~k~~~~~~~g----a~~~i~~~~~~~~~~~~~~~~   98 (172)
T d1h2ba2          32 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKE--------EKLKLAERLG----ADHVVDARRDPVKQVMELTRG   98 (172)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSH--------HHHHHHHHTT----CSEEEETTSCHHHHHHHHTTT
T ss_pred             CCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchh--------HHHHHHhhcc----cceeecCcccHHHHHHHhhCC
Confidence            3567999885 9999999998888775 666666766        3333333331    1233322211122223322  


Q ss_pred             cCccEEEEeccc
Q 020104           81 AGCTGVLHVATP   92 (331)
Q Consensus        81 ~~~d~Vih~a~~   92 (331)
                      .++|+||.+++.
T Consensus        99 ~g~d~vid~~g~  110 (172)
T d1h2ba2          99 RGVNVAMDFVGS  110 (172)
T ss_dssp             CCEEEEEESSCC
T ss_pred             CCceEEEEecCc
Confidence            259999998874

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.83  E-value=0.016  Score=47.50  Aligned_cols=34  Identities=18%  Similarity=0.355  Sum_probs=31.2

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      +|||+|+|| |+-|...|..|+++|++|.++-+++
T Consensus         2 ~KKI~IIGa-G~sGL~aA~~L~k~G~~V~viEk~~   35 (314)
T d2bi7a1           2 SKKILIVGA-GFSGAVIGRQLAEKGHQVHIIDQRD   35 (314)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCEEEEECC-cHHHHHHHHHHHhCCCCEEEEECCC
Confidence            579999995 9999999999999999999998876

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.80  E-value=0.03  Score=41.00  Aligned_cols=83  Identities=10%  Similarity=0.053  Sum_probs=51.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+|+++|.|-+.-+|+.|+..|+++|..|..+..+..       ..............+..-+ . -...+.+.+....+
T Consensus        28 ~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~-------~~~~~~~~~~~~~~~~~~~-~-~~~~~~lk~~~~~a   98 (171)
T d1edza1          28 YGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNI-------QKFTRGESLKLNKHHVEDL-G-EYSEDLLKKCSLDS   98 (171)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEE-------EEEESCCCSSCCCCEEEEE-E-ECCHHHHHHHHHHC
T ss_pred             CCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccc-------cccccccceeeeeeccccc-c-ccchhHHhhccccC
Confidence            4689999999999999999999999999987765431       0000000000000111110 0 12334577777789


Q ss_pred             cEEEEecccCCC
Q 020104           84 TGVLHVATPVDF   95 (331)
Q Consensus        84 d~Vih~a~~~~~   95 (331)
                      |+||..++..++
T Consensus        99 DIvIsavG~p~~  110 (171)
T d1edza1          99 DVVITGVPSENY  110 (171)
T ss_dssp             SEEEECCCCTTC
T ss_pred             CEEEEccCCCcc
Confidence            999998876553

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=94.77  E-value=0.0052  Score=46.72  Aligned_cols=35  Identities=17%  Similarity=0.117  Sum_probs=31.3

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      .+++|+|-| .|-+|+++++.|.+.|.+|++.+.+.
T Consensus        26 ~gk~v~IqG-~G~VG~~~A~~L~~~Gakvvv~d~d~   60 (201)
T d1c1da1          26 DGLTVLVQG-LGAVGGSLASLAAEAGAQLLVADTDT   60 (201)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEecchH
Confidence            468999999 79999999999999999999887765

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=94.74  E-value=0.011  Score=44.53  Aligned_cols=34  Identities=21%  Similarity=0.138  Sum_probs=30.8

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      .++|.|.| .|-||+.+++.|...|.+|...+|..
T Consensus        44 ~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~   77 (188)
T d2naca1          44 AMHVGTVA-AGRIGLAVLRRLAPFDVHLHYTDRHR   77 (188)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred             ccceeecc-ccccchhhhhhhhccCceEEEEeecc
Confidence            56899999 69999999999999999999999875

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=94.71  E-value=0.016  Score=41.58  Aligned_cols=35  Identities=23%  Similarity=0.236  Sum_probs=30.2

Q ss_pred             CceEEEecCcchhHHHHHHHHHHC--CCeEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDH--GYSVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~   39 (331)
                      +|+|.|.|+||-||...++-+.+.  .++|.+++-..
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~   38 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANR   38 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESS
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCC
Confidence            589999999999999999999875  48888886554

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.70  E-value=0.033  Score=41.13  Aligned_cols=35  Identities=14%  Similarity=0.022  Sum_probs=29.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   39 (331)
                      +..+|+|.|+ |-+|...+..+...|. +|+++++++
T Consensus        27 ~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~   62 (174)
T d1p0fa2          27 PGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHK   62 (174)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChH
Confidence            4568999985 9999999999999885 788888877

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=94.70  E-value=0.0026  Score=46.92  Aligned_cols=114  Identities=15%  Similarity=0.136  Sum_probs=61.6

Q ss_pred             CceEEEecCcchhHHH-HHHHHHHC-----CCeEEEEecCCCCcccCCccc----cccccCCCCCCCcEEEEeCCCCCCc
Q 020104            5 KGRVCVTGGTGFIASW-LIMRLLDH-----GYSVTTTVRSELDPEHRNSKD----LSFLKNLPGASERLRIFHADLSHPD   74 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~-l~~~L~~~-----g~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~D~~~~~   74 (331)
                      ..||.|.|| |.+|.. ++..|+..     +.++.+++.++     +..+.    ++.......  ...+...     ..
T Consensus         3 ~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~-----~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~   69 (167)
T d1u8xx1           3 SFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDK-----ERQDRIAGACDVFIREKA--PDIEFAA-----TT   69 (167)
T ss_dssp             CEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCH-----HHHHHHHHHHHHHHHHHC--TTSEEEE-----ES
T ss_pred             CceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCCh-----hHHHHHHHHHHHHHHHhC--CCcceEe-----cC
Confidence            458999998 445554 44555543     13899998887     22211    111111001  1122211     12


Q ss_pred             cHHHHhcCccEEEEecccCCCCCCChhhHHHH--------------------HHHHHHHHHHHHHHhcCCccEEEEec
Q 020104           75 GFDAAIAGCTGVLHVATPVDFEDKEPEEVITQ--------------------RAINGTLGILKSCLKSGTVKRVVYTS  132 (331)
Q Consensus        75 ~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~--------------------~n~~~~~~l~~~~~~~~~~~~~v~~S  132 (331)
                      +..++++++|+||..|+.......... +.+.                    .|+.-.+.+++.+++..+-..++.+|
T Consensus        70 d~~eal~~AD~Vvitag~~~~~g~~rd-~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~~T  146 (167)
T d1u8xx1          70 DPEEAFTDVDFVMAHIRVGKYAMRALD-EQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYS  146 (167)
T ss_dssp             CHHHHHSSCSEEEECCCTTHHHHHHHH-HHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred             ChhhccCCCCEEEECCCcCCCCceeHH-HhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEEeC
Confidence            467889999999999986432111111 2222                    34566677888888876345666554

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.70  E-value=0.023  Score=41.94  Aligned_cols=74  Identities=16%  Similarity=0.143  Sum_probs=44.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEE-EEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHH---H
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVT-TTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDA---A   79 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~---~   79 (331)
                      ++.+|+|.|+ |.+|...+..+...|.+++ ++++++        .+++..+++..    .+++  |..+.+..++   +
T Consensus        28 ~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~--------~k~~~a~~~Ga----~~~i--~~~~~~~~~~i~~~   92 (174)
T d1f8fa2          28 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVE--------SRLELAKQLGA----THVI--NSKTQDPVAAIKEI   92 (174)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCH--------HHHHHHHHHTC----SEEE--ETTTSCHHHHHHHH
T ss_pred             CCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHH--------HHHHHHHHcCC----eEEE--eCCCcCHHHHHHHH
Confidence            4568999986 9999999998888887655 445554        33333333311    1333  3334332222   2


Q ss_pred             hc-CccEEEEeccc
Q 020104           80 IA-GCTGVLHVATP   92 (331)
Q Consensus        80 ~~-~~d~Vih~a~~   92 (331)
                      .. ++|+||.+.+.
T Consensus        93 t~gg~D~vid~~G~  106 (174)
T d1f8fa2          93 TDGGVNFALESTGS  106 (174)
T ss_dssp             TTSCEEEEEECSCC
T ss_pred             cCCCCcEEEEcCCc
Confidence            22 59999998773

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=94.69  E-value=0.078  Score=35.97  Aligned_cols=71  Identities=11%  Similarity=0.142  Sum_probs=46.9

Q ss_pred             CCceEEEecCc----------chhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCC
Q 020104            4 GKGRVCVTGGT----------GFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHP   73 (331)
Q Consensus         4 ~~~~ilVtGat----------G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   73 (331)
                      ..++|||+|+.          -|-+.+.+++|.+.|++++.+.-++.+-..+              ..-..-+..+-...
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVstd--------------~d~aD~lYfeplt~   68 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTD--------------YDTSDRLYFEPVTL   68 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTTS--------------TTSSSEEECCCCSH
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhhcC--------------hhhcCceEEccCCH
Confidence            45799999973          3789999999999999999998888311111              01111222333345


Q ss_pred             ccHHHHhc--CccEEEE
Q 020104           74 DGFDAAIA--GCTGVLH   88 (331)
Q Consensus        74 ~~~~~~~~--~~d~Vih   88 (331)
                      +.+.++++  ++|.|+-
T Consensus        69 e~v~~Ii~~E~p~~ii~   85 (121)
T d1a9xa4          69 EDVLEIVRIEKPKGVIV   85 (121)
T ss_dssp             HHHHHHHHHHCCSEEEC
T ss_pred             HHHHHHHHHhCCCEEEe
Confidence            66777663  7998873

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.67  E-value=0.099  Score=36.77  Aligned_cols=34  Identities=24%  Similarity=0.379  Sum_probs=29.7

Q ss_pred             CceEEEecCc---chhHHHHHHHHHHCCCeEEEEecC
Q 020104            5 KGRVCVTGGT---GFIASWLIMRLLDHGYSVTTTVRS   38 (331)
Q Consensus         5 ~~~ilVtGat---G~iG~~l~~~L~~~g~~V~~~~r~   38 (331)
                      .++|.|.|++   +-.|..+++.|.+.||+|+.+..+
T Consensus        19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~   55 (139)
T d2d59a1          19 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPK   55 (139)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCc
Confidence            4689999998   889999999999999999877543

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=94.62  E-value=0.015  Score=46.24  Aligned_cols=31  Identities=23%  Similarity=0.270  Sum_probs=29.1

Q ss_pred             EEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            8 VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      |+|+|| |..|..++.+|+++|++|.++.++.
T Consensus         7 vvIIGa-Gi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           7 AVVIGG-GIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            999995 9999999999999999999998865

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.48  E-value=0.019  Score=43.01  Aligned_cols=34  Identities=21%  Similarity=0.281  Sum_probs=30.8

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   39 (331)
                      .+||+|+|| |..|-..+.+|.++|+ +|.++.|++
T Consensus         4 ~~kVaIIGa-GpaGl~aA~~l~~~G~~~V~v~E~~~   38 (196)
T d1gtea4           4 SAKIALLGA-GPASISCASFLARLGYSDITIFEKQE   38 (196)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred             CCEEEEECC-hHHHHHHHHHHHHCCCCeEEEEEecC
Confidence            579999996 9999999999999998 599998876

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.42  E-value=0.018  Score=43.55  Aligned_cols=32  Identities=22%  Similarity=0.226  Sum_probs=27.7

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      |||.|.| .||+|..++..| ++|++|++++.++
T Consensus         1 MkI~ViG-lG~vGl~~a~~~-a~g~~V~g~Din~   32 (196)
T d1dlja2           1 MKIAVAG-SGYVGLSLGVLL-SLQNEVTIVDILP   32 (196)
T ss_dssp             CEEEEEC-CSHHHHHHHHHH-TTTSEEEEECSCH
T ss_pred             CEEEEEC-CChhHHHHHHHH-HCCCcEEEEECCH
Confidence            5899997 799999998756 5799999998876

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.31  E-value=0.013  Score=43.87  Aligned_cols=66  Identities=15%  Similarity=0.041  Sum_probs=45.7

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .++++.|.| .|.||+.+++.+..-|.+|++.++..     .......         ..+        ...++.++++.+
T Consensus        43 ~~k~vgiiG-~G~IG~~va~~~~~fg~~v~~~d~~~-----~~~~~~~---------~~~--------~~~~l~ell~~s   99 (184)
T d1ygya1          43 FGKTVGVVG-LGRIGQLVAQRIAAFGAYVVAYDPYV-----SPARAAQ---------LGI--------ELLSLDDLLARA   99 (184)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTS-----CHHHHHH---------HTC--------EECCHHHHHHHC
T ss_pred             cceeeeecc-ccchhHHHHHHhhhccceEEeecCCC-----ChhHHhh---------cCc--------eeccHHHHHhhC
Confidence            356888888 69999999999999999999998765     1111110         011        123577888888


Q ss_pred             cEEEEeccc
Q 020104           84 TGVLHVATP   92 (331)
Q Consensus        84 d~Vih~a~~   92 (331)
                      |+|+-+...
T Consensus       100 Div~~~~Pl  108 (184)
T d1ygya1         100 DFISVHLPK  108 (184)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEEcCCC
Confidence            888766653

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=94.27  E-value=0.039  Score=37.65  Aligned_cols=35  Identities=23%  Similarity=0.314  Sum_probs=29.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHH---CCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLD---HGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~---~g~~V~~~~r~~   39 (331)
                      ..++++|.|| |++|-.++..|.+   .|.+|.++.|.+
T Consensus        17 ~p~~v~IiGg-G~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          17 APKRALCVGG-GYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             CCSEEEEECS-SHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             cCCeEEEECC-ChHHHHHHHHhHhhcccccccceecccc
Confidence            4579999996 9999999987765   378999999876

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.15  E-value=0.0039  Score=46.18  Aligned_cols=117  Identities=13%  Similarity=0.070  Sum_probs=62.4

Q ss_pred             CceEEEecC-cchhHHHHHHHHHHCC----CeEEEEecCCCCcccCCccccccccCC-----CCCCCcEEEEeCCCCCCc
Q 020104            5 KGRVCVTGG-TGFIASWLIMRLLDHG----YSVTTTVRSELDPEHRNSKDLSFLKNL-----PGASERLRIFHADLSHPD   74 (331)
Q Consensus         5 ~~~ilVtGa-tG~iG~~l~~~L~~~g----~~V~~~~r~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~D~~~~~   74 (331)
                      ++||.|+|| +.+.+..++..+....    -++..++.++     + ..+.+.+...     ..........     ...
T Consensus         1 k~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e-----~-~~~~~~~d~~~~~~~~~~~~~~~~~-----~~t   69 (169)
T d1s6ya1           1 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPE-----G-KEKLEIVGALAKRMVEKAGVPIEIH-----LTL   69 (169)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGG-----G-HHHHHHHHHHHHHHHHHTTCCCEEE-----EES
T ss_pred             CcEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCc-----c-HHHHHHHHHHHHHHHHhcCCCceee-----ecC
Confidence            368999997 3344455555554432    3788888766     1 1112211110     0000112221     123


Q ss_pred             cHHHHhcCccEEEEecccCCCCCCChh-------------------hHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Q 020104           75 GFDAAIAGCTGVLHVATPVDFEDKEPE-------------------EVITQRAINGTLGILKSCLKSGTVKRVVYTS  132 (331)
Q Consensus        75 ~~~~~~~~~d~Vih~a~~~~~~~~~~~-------------------~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  132 (331)
                      +..+.+++.|+||..|+..........                   -.....|+.-.+.+++.+++..+-..++.+|
T Consensus        70 d~~~al~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vt  146 (169)
T d1s6ya1          70 DRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFT  146 (169)
T ss_dssp             CHHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             CchhhcCCCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeC
Confidence            456788999999999975431100000                   0123467888889999999887344555443

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=94.04  E-value=0.035  Score=43.59  Aligned_cols=34  Identities=29%  Similarity=0.358  Sum_probs=31.3

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      .+||+|+|| |.-|..++..|.++|++|.++.|++
T Consensus         4 ~~kV~IiGa-G~aGl~~A~~L~~~G~~v~v~Er~~   37 (265)
T d2voua1           4 TDRIAVVGG-SISGLTAALMLRDAGVDVDVYERSP   37 (265)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            468999996 9999999999999999999998875

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=93.99  E-value=0.028  Score=41.30  Aligned_cols=34  Identities=21%  Similarity=0.086  Sum_probs=28.9

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC--eEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY--SVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~   39 (331)
                      +|||+|.|| |+.|-.++.+|.+.+.  +|+++.+++
T Consensus         2 gkrivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           2 GRKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            579999996 9999999999998874  777776655

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.99  E-value=0.037  Score=40.34  Aligned_cols=35  Identities=14%  Similarity=0.074  Sum_probs=30.1

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      ++.+|+|.|+ |-+|...+..+...|.+|+++++++
T Consensus        27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          27 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCEEEEeec-ccchhhhhHHHhcCCCeEeccCCCH
Confidence            4568999875 9999999998889999999998877

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.93  E-value=0.047  Score=39.31  Aligned_cols=35  Identities=29%  Similarity=0.278  Sum_probs=29.4

Q ss_pred             CceEEEe-cCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            5 KGRVCVT-GGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVt-GatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      .+.++|. .+.||+|..++..|.+.|.+|.++.+.+
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~   74 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH   74 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCC
Confidence            4556665 2469999999999999999999999876

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.88  E-value=0.025  Score=40.66  Aligned_cols=34  Identities=21%  Similarity=0.358  Sum_probs=30.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRS   38 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~   38 (331)
                      .+|+|||+|| |.+|..-++.|++.|.+|++++..
T Consensus        12 ~gkrvLViGg-G~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          12 KDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             TTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999997 999999999999999999999654

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.74  E-value=0.046  Score=42.33  Aligned_cols=35  Identities=31%  Similarity=0.386  Sum_probs=31.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      ..++|+|+|| |.-|-..+..|.+.|++|.++.+++
T Consensus        48 ~~k~VvIIGa-GpAGl~aA~~l~~~G~~v~l~E~~~   82 (233)
T d1djqa3          48 NKDSVLIVGA-GPSGSEAARVLMESGYTVHLTDTAE   82 (233)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCceEEEEcc-cHHHHHHHHHHHHhccceeeEeecc
Confidence            4578999995 9999999999999999999998776

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.70  E-value=0.22  Score=34.19  Aligned_cols=94  Identities=12%  Similarity=0.049  Sum_probs=58.7

Q ss_pred             ceEEEecCcchhHHHHHHHHHH-CCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhc-Cc
Q 020104            6 GRVCVTGGTGFIASWLIMRLLD-HGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIA-GC   83 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-~~   83 (331)
                      .+|+|.|| |.+|+.|++++.. .+|++.++.-+.+    ....  +       .-.++.++.     .+.+.+..+ .+
T Consensus         4 ~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~----~k~G--~-------~I~Gi~V~~-----~~~l~~~~~~~i   64 (126)
T d2dt5a2           4 WGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDP----EKVG--R-------PVRGGVIEH-----VDLLPQRVPGRI   64 (126)
T ss_dssp             EEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCT----TTTT--C-------EETTEEEEE-----GGGHHHHSTTTC
T ss_pred             ceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCch----HhcC--C-------EECCEEEec-----HHHHHHHHhhcc
Confidence            47999995 9999999998754 4789888776552    1100  0       013555543     345666654 46


Q ss_pred             cEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccce
Q 020104           84 TGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAA  136 (331)
Q Consensus        84 d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~  136 (331)
                      ++++-+...                 ...+.+++.|.+++ ++.+..++....
T Consensus        65 ~iai~~i~~-----------------~~~~~I~d~l~~~g-Ik~I~~f~~~~l   99 (126)
T d2dt5a2          65 EIALLTVPR-----------------EAAQKAADLLVAAG-IKGILNFAPVVL   99 (126)
T ss_dssp             CEEEECSCH-----------------HHHHHHHHHHHHHT-CCEEEECSSSCC
T ss_pred             cEEEEeCCH-----------------HHHHHHHHHHHHcC-CCEEeecCceee
Confidence            665543321                 11246788888888 988888776543

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.67  E-value=0.066  Score=35.79  Aligned_cols=35  Identities=17%  Similarity=-0.062  Sum_probs=28.9

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      .+|+|+|.| +|.-|.-++..|+...-+|+...|++
T Consensus        31 ~gK~VlVVG-~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          31 VGESVLVVG-GASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             TTCCEEEEC-SSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CCCeEEEEC-CCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            368999999 59999999999998877776666655

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.53  E-value=0.045  Score=37.32  Aligned_cols=36  Identities=33%  Similarity=0.311  Sum_probs=29.2

Q ss_pred             CCCceEEEecCcchhHHHHHHHHHHC---CCeEEEEecCC
Q 020104            3 EGKGRVCVTGGTGFIASWLIMRLLDH---GYSVTTTVRSE   39 (331)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~---g~~V~~~~r~~   39 (331)
                      ...++++|.|| |++|-.++..|.+.   |.+|+++.|.+
T Consensus        18 ~~p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          18 EPPRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             SCCSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             hcCCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            34578999996 99999999877654   56899998876

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=93.49  E-value=0.094  Score=35.99  Aligned_cols=72  Identities=14%  Similarity=0.070  Sum_probs=48.9

Q ss_pred             CCceEEEecC----------cchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCC
Q 020104            4 GKGRVCVTGG----------TGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHP   73 (331)
Q Consensus         4 ~~~~ilVtGa----------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   73 (331)
                      ..+||||+|+          --|-+.+.+++|.+.|++++.+.-++.     .-..-.         .-..-+..+-.+.
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~-----TVstd~---------d~aD~lYfePlt~   71 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA-----TIMTDP---------EMADATYIEPIHW   71 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT-----CGGGCG---------GGSSEEECSCCCH
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH-----hhhcCh---------hhcceeeeecCCH
Confidence            3479999998          347899999999999999999988883     111100         0112233334455


Q ss_pred             ccHHHHhc--CccEEEEe
Q 020104           74 DGFDAAIA--GCTGVLHV   89 (331)
Q Consensus        74 ~~~~~~~~--~~d~Vih~   89 (331)
                      +.+.++++  ++|.|+-.
T Consensus        72 e~v~~Ii~~E~pd~il~~   89 (127)
T d1a9xa3          72 EVVRKIIEKERPDAVLPT   89 (127)
T ss_dssp             HHHHHHHHHHCCSEEECS
T ss_pred             HHHHHHHHHhCcCCeEEE
Confidence            67777774  79999843

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=93.43  E-value=0.36  Score=37.37  Aligned_cols=33  Identities=21%  Similarity=0.161  Sum_probs=28.0

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSE   39 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   39 (331)
                      .+|+|.| .|.+|++++..|+..|- ++++++.+.
T Consensus        31 ~~VliiG-~GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          31 SRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            5899999 58899999999999995 777777554

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.35  E-value=0.031  Score=44.78  Aligned_cols=33  Identities=21%  Similarity=0.163  Sum_probs=30.3

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      .+|+|.|| |..|..++..|.+.|++|.++.|++
T Consensus         3 ~~V~IvGa-Gp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           3 TQVAIIGA-GPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CCEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            37999996 9999999999999999999998876

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=93.27  E-value=0.034  Score=44.48  Aligned_cols=33  Identities=24%  Similarity=0.243  Sum_probs=30.3

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      |+|+|+|| |.-|-..+.+|.++|++|.++-+++
T Consensus         1 m~V~IIGa-G~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGG-GISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CCEEEECC-BHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCCCEEEEecCC
Confidence            47999996 9999999999999999999998765

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.23  E-value=0.047  Score=40.99  Aligned_cols=33  Identities=15%  Similarity=0.093  Sum_probs=28.2

Q ss_pred             ceEEEecCcchhHHHHHHHHHHC--CCeEEEEecCC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDH--GYSVTTTVRSE   39 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~   39 (331)
                      |||+|.|| |++|-.++..|.+.  +.+|+++.|++
T Consensus         1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECS-SHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECC-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            58999996 99999999999886  46888888765

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=93.22  E-value=0.049  Score=39.82  Aligned_cols=35  Identities=20%  Similarity=0.369  Sum_probs=31.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   39 (331)
                      .+++|+|.|+ |..|++++..|.+.|. +|.++.|+.
T Consensus        16 ~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          16 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccH
Confidence            4578999995 9999999999999995 799999987

>d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Phosphopantothenoylcysteine synthetase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.22  E-value=0.13  Score=41.02  Aligned_cols=27  Identities=22%  Similarity=0.235  Sum_probs=24.3

Q ss_pred             CcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104           13 GTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus        13 atG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      .||-.|.+|+++|+.+|++|+.+.+..
T Consensus        44 SSGk~G~alA~~~~~~Ga~V~li~g~~   70 (290)
T d1p9oa_          44 SSGRRGATSAEAFLAAGYGVLFLYRAR   70 (290)
T ss_dssp             CCCHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred             CchHHHHHHHHHHHHcCCEEEEEecCC
Confidence            468999999999999999999998765

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=93.17  E-value=0.042  Score=44.08  Aligned_cols=33  Identities=30%  Similarity=0.303  Sum_probs=30.4

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      |||+|+|| |.-|-..+.+|.+.|++|.++-+++
T Consensus         2 KkV~IIGa-G~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           2 KRVAVIGA-GVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            78999995 9999999999999999999998765

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=93.10  E-value=0.049  Score=44.28  Aligned_cols=35  Identities=26%  Similarity=0.247  Sum_probs=31.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      ..|+|+|+|| |.-|-..+.+|.++|++|.++.+++
T Consensus        29 ~pkkV~IIGa-G~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          29 NPKHVVIVGA-GMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             SCCEEEEECC-BHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            3478999995 9999999999999999999998765

>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: 10-formyltetrahydrofolate dehydrogenase domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.99  E-value=0.059  Score=40.76  Aligned_cols=33  Identities=15%  Similarity=0.212  Sum_probs=28.1

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      |||++.| ++..|..+++.|.+.|++|.++...+
T Consensus         1 MkI~~~G-~~~~~~~~l~~L~~~~~~i~~V~t~p   33 (203)
T d2bw0a2           1 MKIAVIG-QSLFGQEVYCHLRKEGHEVVGVFTVP   33 (203)
T ss_dssp             CEEEEEC-CHHHHHHHHHHHHHTTCEEEEEEECC
T ss_pred             CEEEEEc-CCHHHHHHHHHHHHCCCcEEEEEcCC
Confidence            5899998 67899999999999999998776544

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=92.98  E-value=0.054  Score=44.41  Aligned_cols=37  Identities=19%  Similarity=0.149  Sum_probs=31.4

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCC--CeEEEEecCC
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHG--YSVTTTVRSE   39 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~   39 (331)
                      |.. ||+|+|+|| |.-|-..+..|++.|  ++|+++-|+.
T Consensus         1 m~~-~KrVaIIGa-G~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           1 LPT-IRKIAIIGA-GPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CCS-CCEEEEECC-SHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CCC-CCeEEEECc-CHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            554 578999995 999999999998876  6999998876

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.97  E-value=0.038  Score=44.68  Aligned_cols=34  Identities=12%  Similarity=0.087  Sum_probs=30.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      |..|+|+|| |.-|..++.+|+++|++|.++-+++
T Consensus         1 M~dv~IIGa-G~sGl~~A~~L~~~g~~V~iiEk~~   34 (298)
T d1i8ta1           1 MYDYIIVGS-GLFGAVCANELKKLNKKVLVIEKRN   34 (298)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred             CccEEEECC-cHHHHHHHHHHHhCCCcEEEEECCC
Confidence            457999995 9999999999999999999998776

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=92.93  E-value=0.051  Score=40.06  Aligned_cols=34  Identities=15%  Similarity=0.289  Sum_probs=29.1

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      +++|+|.|| |++|-.++..|.+.|.+|.++.+.+
T Consensus         3 ~~~VvIIGg-G~~G~e~A~~l~~~g~~v~v~~~~~   36 (185)
T d1q1ra1           3 NDNVVIVGT-GLAGVEVAFGLRASGWEGNIRLVGD   36 (185)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CCCEEEECC-cHHHHHHHHHHHHcCCceEEEEecC
Confidence            468999995 9999999999999998877766554

>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Polymyxin resistance protein ArnA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.87  E-value=0.086  Score=39.84  Aligned_cols=81  Identities=16%  Similarity=0.209  Sum_probs=44.7

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeC-CCCCCccHHHHhc--C
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHA-DLSHPDGFDAAIA--G   82 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-D~~~~~~~~~~~~--~   82 (331)
                      |||+|.| ++-.|..+++.|.+.|++|.++.-.++++.  .......+.+.. ...++.++.. ++.+.+ +.+.+.  +
T Consensus         1 Mkiv~~~-~~~~g~~~l~~L~~~g~~I~~Vvt~~~~~~--~~~~~~~~~~~a-~~~~i~~~~~~~~~~~~-~~~~i~~~~   75 (203)
T d2blna2           1 MKTVVFA-YHDMGCLGIEALLAAGYEISAIFTHTDNPG--EKAFYGSVARLA-AERGIPVYAPDNVNHPL-WVERIAQLS   75 (203)
T ss_dssp             CEEEEEE-CHHHHHHHHHHHHHTTCEEEEEECCCC--------CCCCHHHHH-HHHTCCEECCSCCCSHH-HHHHHHHTC
T ss_pred             CeEEEEe-cCHHHHHHHHHHHHCCCCEEEEEcCCCCCC--cccccCHHHHHH-HHcCCcceecccccchh-hhhhhhhhc
Confidence            5788887 466899999999999999977664332110  000000011000 0124555543 454444 444443  7


Q ss_pred             ccEEEEecc
Q 020104           83 CTGVLHVAT   91 (331)
Q Consensus        83 ~d~Vih~a~   91 (331)
                      +|++|-+..
T Consensus        76 ~Dlii~~g~   84 (203)
T d2blna2          76 PDVIFSFYY   84 (203)
T ss_dssp             CSEEEEESC
T ss_pred             ccceeeeec
Confidence            899887654

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=92.74  E-value=0.12  Score=37.19  Aligned_cols=69  Identities=14%  Similarity=0.119  Sum_probs=50.2

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcCc
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAGC   83 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (331)
                      .+|+++|.| =|++|+-++++|...|.+|+++-++|-          ..++...   .+.+.        ..+.++++..
T Consensus        22 aGk~vvV~G-YG~vGrG~A~~~rg~Ga~V~V~E~DPi----------~alqA~m---dGf~v--------~~~~~a~~~a   79 (163)
T d1v8ba1          22 SGKIVVICG-YGDVGKGCASSMKGLGARVYITEIDPI----------CAIQAVM---EGFNV--------VTLDEIVDKG   79 (163)
T ss_dssp             TTSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSCHH----------HHHHHHT---TTCEE--------CCHHHHTTTC
T ss_pred             cCCEEEEec-ccccchhHHHHHHhCCCEEEEEecCch----------hhHHHHh---cCCcc--------CchhHccccC
Confidence            357899999 599999999999999999999988771          2222211   22222        3467788888


Q ss_pred             cEEEEecccCC
Q 020104           84 TGVLHVATPVD   94 (331)
Q Consensus        84 d~Vih~a~~~~   94 (331)
                      |++|-+.+..+
T Consensus        80 Di~vTaTGn~~   90 (163)
T d1v8ba1          80 DFFITCTGNVD   90 (163)
T ss_dssp             SEEEECCSSSS
T ss_pred             cEEEEcCCCCc
Confidence            99997776543

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=92.66  E-value=0.029  Score=41.60  Aligned_cols=34  Identities=29%  Similarity=0.354  Sum_probs=27.3

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRS   38 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~   38 (331)
                      |+.+|+|.|| |++|-.++..|.+.|.+|.++.+.
T Consensus         2 m~a~VvIIGg-G~~G~e~A~~l~~~g~~v~i~~~~   35 (183)
T d1d7ya1           2 LKAPVVVLGA-GLASVSFVAELRQAGYQGLITVVG   35 (183)
T ss_dssp             CCSSEEEECC-SHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred             CCCCEEEECc-cHHHHHHHHHHHhcCCceEEEEEe
Confidence            3457999995 999999999999998776655543

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.66  E-value=0.19  Score=39.88  Aligned_cols=34  Identities=21%  Similarity=0.212  Sum_probs=29.8

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRS   38 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~   38 (331)
                      .+++|+|-| .|.+|+++++.|.+.|.+|++++-+
T Consensus        35 ~gktvaIqG-fGnVG~~~A~~L~e~Gakvv~vsD~   68 (293)
T d1hwxa1          35 GDKTFAVQG-FGNVGLHSMRYLHRFGAKCVAVGES   68 (293)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEEET
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEcc
Confidence            357899999 5999999999999999999988654

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=92.54  E-value=0.064  Score=39.29  Aligned_cols=32  Identities=13%  Similarity=0.211  Sum_probs=26.0

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC-CeEEEEec
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVR   37 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r   37 (331)
                      |++|.|-| .|-||+.+++.|..++ .+|.++.-
T Consensus         1 M~~VgING-fGRIGR~v~R~l~~~~di~vvaInd   33 (171)
T d1cf2o1           1 MKAVAING-YGTVGKRVADAIAQQDDMKVIGVSK   33 (171)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTSSSEEEEEEEE
T ss_pred             CeEEEEEc-CcHHHHHHHHHHHhCCCceEEEEec
Confidence            57899998 7999999999988775 57766654

>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Methionyl-tRNAfmet formyltransferase
species: Escherichia coli [TaxId: 562]

Probab=92.36  E-value=0.096  Score=39.64  Aligned_cols=85  Identities=24%  Similarity=0.207  Sum_probs=47.0

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCcc-ccccccCCCCCCCcEEEEeCCCCCCccHHHHhc--
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSK-DLSFLKNLPGASERLRIFHADLSHPDGFDAAIA--   81 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (331)
                      .|||+++| ++..+..+++.|.+.|++|.++.-.+++....... ........ ....++.....+..+.+...+.+.  
T Consensus         3 ~mKI~f~G-~~~~~~~~L~~L~~~~~~i~~Vit~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (206)
T d1fmta2           3 SLRIIFAG-TPDFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVL-AEEKGLPVFQPVSLRPQENQQLVAEL   80 (206)
T ss_dssp             CCEEEEEE-CSHHHHHHHHHHHHTTCEEEEEECCCCBC------CBCCHHHHH-HHHTTCCEECCSCSCSHHHHHHHHHT
T ss_pred             CcEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEeCCCcccccCccccccchhhh-hhccCccccccccccchhhHHHHhhh
Confidence            46899998 57889999999999999987766443211100000 00000000 001344555555555555556554  


Q ss_pred             CccEEEEecc
Q 020104           82 GCTGVLHVAT   91 (331)
Q Consensus        82 ~~d~Vih~a~   91 (331)
                      ++|+++-+..
T Consensus        81 ~~d~~v~~~~   90 (206)
T d1fmta2          81 QADVMVVVAY   90 (206)
T ss_dssp             TCSEEEEESC
T ss_pred             cceEEEeecc
Confidence            6788776554

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.33  E-value=0.2  Score=42.46  Aligned_cols=76  Identities=13%  Similarity=0.127  Sum_probs=48.6

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCcccCCcccccc--------------------ccCCCCCCCcEE
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKDLSF--------------------LKNLPGASERLR   64 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~   64 (331)
                      .||||.|+ |.+|.++++.|+..|. ++.+++.+.-     ....+.+                    +.++ ...-++.
T Consensus        38 ~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D~V-----e~sNL~RQflf~~~diG~~Ka~~a~~~l~~~-np~v~i~  110 (426)
T d1yovb1          38 CKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTI-----DVSNLNRQFLFRPKDIGRPKAEVAAEFLNDR-VPNCNVV  110 (426)
T ss_dssp             CCEEEECS-STTHHHHHHHHHTTTCCCEEEECCCBC-----CGGGGGTCTTCCGGGTTSBHHHHHHHHHHHH-STTCCCE
T ss_pred             CeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECCCc-----chhhhcccccCChhHcCcHHHHHHHHHHHhh-CCCCceE
Confidence            48999996 7799999999999995 7888887552     1111111                    1110 0113455


Q ss_pred             EEeCCCCCCccHHHHhcCccEEEEec
Q 020104           65 IFHADLSHPDGFDAAIAGCTGVLHVA   90 (331)
Q Consensus        65 ~~~~D~~~~~~~~~~~~~~d~Vih~a   90 (331)
                      .+..++.+..  .+.+.++|+||.+.
T Consensus       111 ~~~~~i~~~~--~~~~~~~DlVi~~~  134 (426)
T d1yovb1         111 PHFNKIQDFN--DTFYRQFHIIVCGL  134 (426)
T ss_dssp             EECSCGGGBC--HHHHTTCSEEEECC
T ss_pred             eeeccccchH--HHHHHhcchheecc
Confidence            6666665533  46788999999653

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.03  E-value=0.087  Score=36.94  Aligned_cols=34  Identities=26%  Similarity=0.356  Sum_probs=28.7

Q ss_pred             CceEEEecCcchhHHHHHHHHH----HCCCeEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLL----DHGYSVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~----~~g~~V~~~~r~~   39 (331)
                      .++++|.|| |++|-.++..|.    +.|.+|+++.+++
T Consensus        37 ~k~i~IvGg-G~~G~E~A~~l~~~~~~~g~~Vt~i~~~~   74 (137)
T d1m6ia2          37 VKSITIIGG-GFLGSELACALGRKARALGTEVIQLFPEK   74 (137)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHHHHhcCCEEEEecccc
Confidence            368999996 999999999885    3589999998876

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=91.96  E-value=0.19  Score=36.57  Aligned_cols=35  Identities=14%  Similarity=0.077  Sum_probs=26.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~   39 (331)
                      ++.+|+|+|+ |-+|...+..+...+ .+|+++++++
T Consensus        28 ~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~   63 (175)
T d1cdoa2          28 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNP   63 (175)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCCEEEEEec-CCccchHHHHHHHHhhchheeecchH
Confidence            3468999996 557777777777776 5788888877

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=91.58  E-value=0.42  Score=36.89  Aligned_cols=34  Identities=21%  Similarity=0.317  Sum_probs=30.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRS   38 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~   38 (331)
                      .+++|+|-| .|.+|+++++.|.+.|.+|++++-.
T Consensus        30 ~g~~v~IqG-fGnVG~~~a~~L~~~Gakvv~vsD~   63 (242)
T d1v9la1          30 EGKTVAIQG-MGNVGRWTAYWLEKMGAKVIAVSDI   63 (242)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEECS
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEeecc
Confidence            467999998 6999999999999999999887744

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=91.28  E-value=0.095  Score=41.49  Aligned_cols=31  Identities=19%  Similarity=0.154  Sum_probs=28.8

Q ss_pred             EEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            8 VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      |+|+|| |..|..++.+|+++|++|.++.+..
T Consensus         6 vvIIGa-Gi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           6 VIVVGA-GSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            899995 9999999999999999999998865

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.17  E-value=0.1  Score=37.61  Aligned_cols=31  Identities=26%  Similarity=0.281  Sum_probs=26.8

Q ss_pred             eEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      ||+|.|| |++|-.++..|. ++.+|.++.|.+
T Consensus         2 rVvIIGg-G~~G~e~A~~l~-~~~~Vtvv~~~~   32 (167)
T d1xhca1           2 KVVIVGN-GPGGFELAKQLS-QTYEVTVIDKEP   32 (167)
T ss_dssp             EEEEECC-SHHHHHHHHHHT-TTSEEEEECSSS
T ss_pred             eEEEECC-cHHHHHHHHHHH-cCCCEEEEeccc
Confidence            7999995 999999999885 478999998765

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=91.14  E-value=0.54  Score=32.61  Aligned_cols=34  Identities=21%  Similarity=0.258  Sum_probs=29.1

Q ss_pred             CceEEEecCc---chhHHHHHHHHHHCCCeEEEEecC
Q 020104            5 KGRVCVTGGT---GFIASWLIMRLLDHGYSVTTTVRS   38 (331)
Q Consensus         5 ~~~ilVtGat---G~iG~~l~~~L~~~g~~V~~~~r~   38 (331)
                      .++|.|.|+|   +-.|..+++.|.+.||+++.+.-+
T Consensus        13 pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~   49 (136)
T d1iuka_          13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPR   49 (136)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGG
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEec
Confidence            3689999997   679999999999999999887544

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=91.12  E-value=0.099  Score=40.22  Aligned_cols=78  Identities=14%  Similarity=0.066  Sum_probs=55.6

Q ss_pred             CCceEEEecC-cchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            4 GKGRVCVTGG-TGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         4 ~~~~ilVtGa-tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      ++++||=.|+ +|+.-++|++..-.. -.|++++.++     .....+.   +......++..+..|..+++.+......
T Consensus        73 pG~~VLDlGaGsG~~t~~la~~VG~~-G~V~aVD~s~-----~~l~~a~---~~a~~~~~~~~i~~d~~~~~~~~~~~~~  143 (227)
T d1g8aa_          73 PGKSVLYLGIASGTTASHVSDIVGWE-GKIFGIEFSP-----RVLRELV---PIVEERRNIVPILGDATKPEEYRALVPK  143 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHHHCTT-SEEEEEESCH-----HHHHHHH---HHHSSCTTEEEEECCTTCGGGGTTTCCC
T ss_pred             CCCEEEEeccCCCHHHHHHHHHhCCC-CEEEEEeCcH-----HHHHHHH---HHHHhcCCceEEEEECCCcccccccccc
Confidence            4578888886 899999999966444 4999999887     2222222   2222336789999999998877666677


Q ss_pred             ccEEEEec
Q 020104           83 CTGVLHVA   90 (331)
Q Consensus        83 ~d~Vih~a   90 (331)
                      +|+|++..
T Consensus       144 vD~i~~d~  151 (227)
T d1g8aa_         144 VDVIFEDV  151 (227)
T ss_dssp             EEEEEECC
T ss_pred             eEEEEEEc
Confidence            89888643

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=91.07  E-value=0.1  Score=41.94  Aligned_cols=32  Identities=22%  Similarity=0.500  Sum_probs=28.9

Q ss_pred             eEEEecCcchhHHHHHHHHHHCCC-eEEEEecCC
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSE   39 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   39 (331)
                      +|+|+|| |.+|..++.+|+++|. +|.++.|+.
T Consensus         3 dViIIGa-Gi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGA-GIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            6999995 9999999999999995 799998875

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.97  E-value=0.017  Score=44.85  Aligned_cols=26  Identities=31%  Similarity=0.289  Sum_probs=23.4

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeE
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSV   32 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V   32 (331)
                      |||+|+|| |.+|...+.+|+++|++|
T Consensus         1 mkV~VIGa-Gi~GlstA~~L~~~G~~v   26 (246)
T d1kifa1           1 MRVVVIGA-GVIGLSTALCIHERYHSV   26 (246)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHHTTT
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCCCc
Confidence            58999995 999999999999999754

>d1h9aa1 c.2.1.3 (A:1-181,A:413-426) Glucose 6-phosphate dehydrogenase, N-terminal domain {Leuconostoc mesenteroides [TaxId: 1245]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose 6-phosphate dehydrogenase, N-terminal domain
species: Leuconostoc mesenteroides [TaxId: 1245]

Probab=90.84  E-value=0.3  Score=36.39  Aligned_cols=88  Identities=16%  Similarity=0.246  Sum_probs=52.9

Q ss_pred             CCCCCceEEEecCcchhHHHHHH-HHH---HC-----CCeEEEEecCCCCcccCCccccc----cccCCC-------CCC
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIM-RLL---DH-----GYSVTTTVRSELDPEHRNSKDLS----FLKNLP-------GAS   60 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~-~L~---~~-----g~~V~~~~r~~~~~~~~~~~~~~----~~~~~~-------~~~   60 (331)
                      |++....++|.||||-+.+.-+- .|-   ..     +.+|++++|+..+    ..+.++    .+.+..       ...
T Consensus         1 ~~e~~t~lVIFGaTGDLa~RKL~PAL~~L~~~g~lp~~~~Iig~aR~~~~----~e~f~~~v~~~l~~~~~~~~~~~~~~   76 (195)
T d1h9aa1           1 VSEIKTLVTFFGGTGDLAKRKLYPSVFNLYKKGYLQKHFAIVGTARQALN----DDEFKQLVRDSIKDFTDDQAQAEAFI   76 (195)
T ss_dssp             CCCCCEEEEEETTTSHHHHHTHHHHHHHHHHTTSSCSSEEEEEEESSCCC----HHHHHHHHHHHHGGGCSCHHHHHHHH
T ss_pred             CCCCceEEEEECcccHHHHhHHHHHHHHHHHcCCCCCCCEEEEEECCcCc----HHHHHHHHHHHHhhccchHhhHHHHh
Confidence            66665556688999999875433 332   22     3689999998731    111111    111100       113


Q ss_pred             CcEEEEeCCCCCCccHHHHhc-----------CccEEEEeccc
Q 020104           61 ERLRIFHADLSHPDGFDAAIA-----------GCTGVLHVATP   92 (331)
Q Consensus        61 ~~~~~~~~D~~~~~~~~~~~~-----------~~d~Vih~a~~   92 (331)
                      .++.++.+|+.+++++..+.+           ....|+++|-+
T Consensus        77 ~~~~y~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~rifYLAvp  119 (195)
T d1h9aa1          77 EHFSYRAHDVTDAASYAVLKEAIEEAADKFDIDGNRIFYMSVA  119 (195)
T ss_dssp             TTEEEEECCTTCTTTHHHHHHHHHHHHHHHTCCSCEEEEECSC
T ss_pred             hccceeeEeeccHhhHHHHHHHHHHHHhhcCCCcceEEEEecC
Confidence            678899999998876654322           23579999864

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.25  E-value=0.18  Score=40.85  Aligned_cols=35  Identities=23%  Similarity=0.293  Sum_probs=30.6

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      +..||+|+|| |.-|-.-+..|.+.|++|.++-+++
T Consensus         4 ~~~kViVIGa-G~aGL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIGS-GVSGLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             CCCEEEEECC-BHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            4468999995 9999999999999999999986654

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.14  E-value=0.13  Score=37.84  Aligned_cols=34  Identities=15%  Similarity=0.216  Sum_probs=29.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      .+|+|+|.|+ |..++.++..|.+.| +|+++.|+.
T Consensus        17 ~~k~vlIlGa-GG~arai~~aL~~~~-~i~I~nR~~   50 (177)
T d1nvta1          17 KDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTV   50 (177)
T ss_dssp             CSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CCCEEEEECC-cHHHHHHHHHHcccc-ceeeehhhh
Confidence            4679999995 789999999997766 999999987

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.11  E-value=0.061  Score=40.90  Aligned_cols=76  Identities=20%  Similarity=0.189  Sum_probs=52.7

Q ss_pred             CCceEEEecC-cchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            4 GKGRVCVTGG-TGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         4 ~~~~ilVtGa-tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      ++++||=.|+ ||..-.+|++.. ..| +|++++.++     ...+.+...   ....+++.++.+|..++......+..
T Consensus        56 pg~~VLDlGcG~G~~~~~la~~v-~~g-~V~gvDis~-----~~i~~a~~~---a~~~~ni~~i~~d~~~~~~~~~~~~~  125 (209)
T d1nt2a_          56 GDERVLYLGAASGTTVSHLADIV-DEG-IIYAVEYSA-----KPFEKLLEL---VRERNNIIPLLFDASKPWKYSGIVEK  125 (209)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHT-TTS-EEEEECCCH-----HHHHHHHHH---HHHCSSEEEECSCTTCGGGTTTTCCC
T ss_pred             CCCEEEEeCCcCCHHHHHHHHhc-cCC-eEEEEeCCH-----HHHHHHHHH---hhccCCceEEEeeccCccccccccce
Confidence            4568988886 788888887765 444 899998887     222222211   11236899999999998776666667


Q ss_pred             ccEEEEe
Q 020104           83 CTGVLHV   89 (331)
Q Consensus        83 ~d~Vih~   89 (331)
                      +|+|+|.
T Consensus       126 vd~v~~~  132 (209)
T d1nt2a_         126 VDLIYQD  132 (209)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEec
Confidence            8888874

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.08  E-value=0.19  Score=39.37  Aligned_cols=33  Identities=21%  Similarity=0.145  Sum_probs=29.7

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSE   39 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~   39 (331)
                      ++|+|+|| |.-|..++..|.+.| ++|.++-|++
T Consensus         2 ~~V~IvGa-G~aGl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           2 IDILIAGA-GIGGLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            58999996 999999999999999 5899988876

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.82  E-value=0.17  Score=38.77  Aligned_cols=31  Identities=29%  Similarity=0.251  Sum_probs=28.9

Q ss_pred             EEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            8 VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      |+|+| +|.-|...+.+|+++|++|.++-+++
T Consensus         8 viViG-aG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLG-TGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             EEEEC-CSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEEC-cCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            79999 59999999999999999999998876

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.66  E-value=0.18  Score=44.10  Aligned_cols=112  Identities=16%  Similarity=0.190  Sum_probs=63.0

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCccc---------C--Cccc----cccccCCCCCCCc--EEEEe
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHG-YSVTTTVRSELDPEH---------R--NSKD----LSFLKNLPGASER--LRIFH   67 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~---------~--~~~~----~~~~~~~~~~~~~--~~~~~   67 (331)
                      .+|+|.|+ |.+|.++++-|...| ..+++++.+.-....         +  ...+    .+.+.++   .+.  ++.+.
T Consensus        26 s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~l---Np~v~i~~~~  101 (529)
T d1yova1          26 AHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQEL---NSDVSGSFVE  101 (529)
T ss_dssp             CEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTT---CTTSBCCEES
T ss_pred             CCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHh---CCCCcEEEEc
Confidence            58999996 779999999999998 477777654411000         0  0000    1112222   222  33343


Q ss_pred             CCCCCC-ccHHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecccceeec
Q 020104           68 ADLSHP-DGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSSNAAVFY  139 (331)
Q Consensus        68 ~D~~~~-~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS~~~~~~  139 (331)
                      .+..+. +...+.+.+.|+||.+..        +        ......+-+.|++.+ + .+|++++.+.+|+
T Consensus       102 ~~~~~~~~~~~~~~~~~dvVv~~~~--------~--------~~~~~~l~~~c~~~~-i-p~i~~~~~G~~G~  156 (529)
T d1yova1         102 ESPENLLDNDPSFFCRFTVVVATQL--------P--------ESTSLRLADVLWNSQ-I-PLLICRTYGLVGY  156 (529)
T ss_dssp             SCHHHHHHSCGGGGGGCSEEEEESC--------C--------HHHHHHHHHHHHHHT-C-CEEEEEEETTEEE
T ss_pred             CCchhhhhhHHHHhcCCCEEEECCC--------C--------HHHHHHHHHHHHHcC-C-CEEEEeccCCEEE
Confidence            332211 011134567899996532        1        112245677888887 4 7999988887764

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.60  E-value=0.29  Score=37.56  Aligned_cols=76  Identities=13%  Similarity=0.104  Sum_probs=52.8

Q ss_pred             CCceEEEecC-cchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            4 GKGRVCVTGG-TGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         4 ~~~~ilVtGa-tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      ++++||=.|+ ||+.-++|++. .. +..|++++.++     ..   ++.+.+.....+++.++.+|..++.........
T Consensus        74 pG~~VLDlGcGsG~~~~~la~~-~~-~g~V~aVDiS~-----~~---i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~  143 (230)
T d1g8sa_          74 RDSKILYLGASAGTTPSHVADI-AD-KGIVYAIEYAP-----RI---MRELLDACAERENIIPILGDANKPQEYANIVEK  143 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHH-TT-TSEEEEEESCH-----HH---HHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCC
T ss_pred             CCCEEEEeCEEcCHHHHHHHHh-CC-CCEEEEEeCcH-----HH---HHHHHHHHhhhcccceEEEeeccCcccccccce
Confidence            4578999997 89999999985 33 34999999887     22   222322233347889999999988776655555


Q ss_pred             ccEEEEe
Q 020104           83 CTGVLHV   89 (331)
Q Consensus        83 ~d~Vih~   89 (331)
                      +|.+++.
T Consensus       144 v~~i~~~  150 (230)
T d1g8sa_         144 VDVIYED  150 (230)
T ss_dssp             EEEEEEC
T ss_pred             eEEeecc
Confidence            6666654

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=88.76  E-value=0.052  Score=38.88  Aligned_cols=79  Identities=14%  Similarity=0.093  Sum_probs=39.8

Q ss_pred             EEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccC-----CCCCCCcEEEEeCCCCCCccHHHHhcC
Q 020104            8 VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKN-----LPGASERLRIFHADLSHPDGFDAAIAG   82 (331)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~D~~~~~~~~~~~~~   82 (331)
                      |-++| +|.+|++|++.|.+.++.+.+.+|++     ++.+++.....     ..+......++..-+.| +.+.+++++
T Consensus         2 IgfIG-~G~mg~~l~~~L~~~~~~~~v~~R~~-----~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d-~~i~~v~~~   74 (153)
T d2i76a2           2 LNFVG-TGTLTRFFLECLKDRYEIGYILSRSI-----DRARNLAEVYGGKAATLEKHPELNGVVFVIVPD-RYIKTVANH   74 (153)
T ss_dssp             CEEES-CCHHHHHHHHTTC----CCCEECSSH-----HHHHHHHHHTCCCCCSSCCCCC---CEEECSCT-TTHHHHHTT
T ss_pred             EEEEe-CcHHHHHHHHHHHhCCCEEEEEeCCh-----hhhcchhhcccccccchhhhhccCcEEEEeccc-hhhhHHHhh
Confidence            34567 79999999998866544456788887     33322222111     01111222333333333 456666542


Q ss_pred             ----ccEEEEecccC
Q 020104           83 ----CTGVLHVATPV   93 (331)
Q Consensus        83 ----~d~Vih~a~~~   93 (331)
                          -.+|||+++..
T Consensus        75 l~~~~~ivi~~s~~~   89 (153)
T d2i76a2          75 LNLGDAVLVHCSGFL   89 (153)
T ss_dssp             TCCSSCCEEECCSSS
T ss_pred             hcccceeeeecccch
Confidence                35788887753

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=88.25  E-value=0.24  Score=38.39  Aligned_cols=32  Identities=25%  Similarity=0.325  Sum_probs=28.8

Q ss_pred             eEEEecCcchhHHHHHHHHHHCCC-eEEEEecCC
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSE   39 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   39 (331)
                      +|+|+|| |.-|...+.+|.++|+ +|.++-+++
T Consensus         2 ~V~IIGa-G~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGA-GMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECC-BHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECC-cHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            6999995 9999999999999996 799998765

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.79  E-value=0.3  Score=35.15  Aligned_cols=75  Identities=24%  Similarity=0.264  Sum_probs=42.4

Q ss_pred             ceEEEecCcchhHHHHHHH-HHHC-----CCeEEEEecCCCCcccCCcccccccc-CCCCCCCcEEEEeCCCCCCccHHH
Q 020104            6 GRVCVTGGTGFIASWLIMR-LLDH-----GYSVTTTVRSELDPEHRNSKDLSFLK-NLPGASERLRIFHADLSHPDGFDA   78 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~-L~~~-----g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~~~~~~~~   78 (331)
                      |||.|.|| |-+|...+-. |++.     ..++.+++.++     ++.+....+. ....  .......     ..+..+
T Consensus         1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~-----~k~~~~~d~~~~~~~--~~~~~~~-----t~~~~~   67 (162)
T d1up7a1           1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDE-----EKQKIVVDFVKRLVK--DRFKVLI-----SDTFEG   67 (162)
T ss_dssp             CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCH-----HHHHHHHHHHHHHHT--TSSEEEE-----CSSHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCc-----HHHHHHHHHHHhhhc--cCceEEE-----ecCccc
Confidence            58999998 5567666543 3321     35899999887     2222111110 0011  1222221     123567


Q ss_pred             HhcCccEEEEecccC
Q 020104           79 AIAGCTGVLHVATPV   93 (331)
Q Consensus        79 ~~~~~d~Vih~a~~~   93 (331)
                      .++++|+||..|+..
T Consensus        68 ~l~~aDvVVita~~~   82 (162)
T d1up7a1          68 AVVDAKYVIFQFRPG   82 (162)
T ss_dssp             HHTTCSEEEECCCTT
T ss_pred             ccCCCCEEEEecccC
Confidence            889999999999854

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=86.96  E-value=0.32  Score=38.92  Aligned_cols=32  Identities=31%  Similarity=0.447  Sum_probs=29.6

Q ss_pred             eEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      .|+|+|| |+-|-.++.+|.+.|.+|.++.+.+
T Consensus         9 dV~IIGA-G~sGl~~a~~L~~~G~~v~i~Ek~~   40 (298)
T d1w4xa1           9 DVLVVGA-GFSGLYALYRLRELGRSVHVIETAG   40 (298)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECc-cHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            5999996 9999999999999999999998876

>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Peptidoglycan biosynthesis glycosyltransferase MurG
domain: Peptidoglycan biosynthesis glycosyltransferase MurG
species: Escherichia coli [TaxId: 562]

Probab=86.66  E-value=0.36  Score=39.03  Aligned_cols=34  Identities=24%  Similarity=0.383  Sum_probs=23.6

Q ss_pred             ceEEEecC-c-chh--HHHHHHHHHHCCCeEEEEecCC
Q 020104            6 GRVCVTGG-T-GFI--ASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         6 ~~ilVtGa-t-G~i--G~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      |||+|++| | |.+  +..|+++|.++||+|..++...
T Consensus         1 kkili~~~GtGGHv~~a~al~~~L~~~G~eV~~i~~~~   38 (351)
T d1f0ka_           1 KRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTAD   38 (351)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHHTTTCEEEEEECTT
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEEeCC
Confidence            57777763 4 333  3358889989999998876543

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=86.63  E-value=0.5  Score=36.04  Aligned_cols=35  Identities=26%  Similarity=0.215  Sum_probs=31.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      .+++|+|-| -|-+|+++++.|.+.|.+|++.+.+.
T Consensus        38 ~g~~v~IqG-~GnVG~~~a~~L~~~Gakvv~~d~~~   72 (230)
T d1leha1          38 EGLAVSVQG-LGNVAKALCKKLNTEGAKLVVTDVNK   72 (230)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEeecccH
Confidence            467999999 69999999999999999999887655

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=86.44  E-value=0.33  Score=34.71  Aligned_cols=37  Identities=24%  Similarity=0.267  Sum_probs=25.2

Q ss_pred             CCCCCceEEEecCcchhHHHH-HHHHHHCC-CeEEEE-ecCC
Q 020104            1 MEEGKGRVCVTGGTGFIASWL-IMRLLDHG-YSVTTT-VRSE   39 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l-~~~L~~~g-~~V~~~-~r~~   39 (331)
                      |+. +.||.|.| ||.+|+.+ .+.|.+.. .++.++ +|+.
T Consensus         1 M~k-kirvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~   40 (157)
T d1nvmb1           1 MNQ-KLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDA   40 (157)
T ss_dssp             CCS-CEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCT
T ss_pred             CCC-CcEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecch
Confidence            664 46899999 89999865 45554443 567666 4554

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=86.18  E-value=0.35  Score=34.43  Aligned_cols=31  Identities=16%  Similarity=0.062  Sum_probs=26.4

Q ss_pred             eEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      ||-++| .|.+|..+++.|++.|+.| +..|..
T Consensus         2 kIg~IG-lG~MG~~ma~~L~~~g~~~-~~~~~~   32 (156)
T d2cvza2           2 KVAFIG-LGAMGYPMAGHLARRFPTL-VWNRTF   32 (156)
T ss_dssp             CEEEEC-CSTTHHHHHHHHHTTSCEE-EECSST
T ss_pred             eEEEEe-HHHHHHHHHHHHHhCCCEE-EEeCCH
Confidence            688999 6999999999999988876 456665

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=85.65  E-value=0.48  Score=36.82  Aligned_cols=33  Identities=21%  Similarity=0.137  Sum_probs=29.5

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEec
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVR   37 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r   37 (331)
                      .+++|+|-| .|.+|+++++.|.+.|.+|+++.-
T Consensus        35 ~g~~v~IQG-fGnVG~~~a~~L~e~GakvvavsD   67 (255)
T d1bgva1          35 VGKTVALAG-FGNVAWGAAKKLAELGAKAVTLSG   67 (255)
T ss_dssp             TTCEEEECC-SSHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEec
Confidence            467999999 699999999999999999988764

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.49  E-value=0.43  Score=38.59  Aligned_cols=31  Identities=29%  Similarity=0.344  Sum_probs=28.5

Q ss_pred             EEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            8 VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      |+|+|| |.-|-..+.+|.++|++|.++-+++
T Consensus         2 ViVIGa-G~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGG-GISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECC-BHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECC-CHHHHHHHHHHHhCCCCEEEEecCC
Confidence            789995 9999999999999999999998765

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.46  E-value=0.58  Score=33.21  Aligned_cols=34  Identities=29%  Similarity=0.221  Sum_probs=28.6

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCCC-eEEEEecCC
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSE   39 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   39 (331)
                      .++|+|+|| |..|-..+..+.+.|. .|+++.|.+
T Consensus        45 ~~kVvVIGG-GdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          45 RGAVIVLGA-GDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCEEEEECC-ChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            468999995 9999999999999985 577777765

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=85.32  E-value=1.9  Score=30.83  Aligned_cols=31  Identities=23%  Similarity=0.225  Sum_probs=26.6

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEec
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVR   37 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r   37 (331)
                      |||.|=| -|-||+.+.+.|..++.+|.++.-
T Consensus         1 ikigING-fGRIGR~~~R~l~~~~i~iv~INd   31 (168)
T d2g82a1           1 MKVGING-FGRIGRQVFRILHSRGVEVALIND   31 (168)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             CEEEEEC-CcHHHHHHHHHHhcCCCEEEEECC
Confidence            4788988 699999999999999999887763

>d1qkia1 c.2.1.3 (A:12-199,A:435-449) Glucose 6-phosphate dehydrogenase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose 6-phosphate dehydrogenase, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.19  E-value=1.2  Score=33.03  Aligned_cols=83  Identities=12%  Similarity=0.084  Sum_probs=51.3

Q ss_pred             ceEEEecCcchhHHHHH-HHH---HHC-----CCeEEEEecCCCCcccCCccccccccCCC-----------CCCCcEEE
Q 020104            6 GRVCVTGGTGFIASWLI-MRL---LDH-----GYSVTTTVRSELDPEHRNSKDLSFLKNLP-----------GASERLRI   65 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~-~~L---~~~-----g~~V~~~~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~   65 (331)
                      -.++|.||||-+...-+ ..|   ...     +.+|++++|++.+    ..+..+.+....           ....++.+
T Consensus        21 ~t~VIFGatGDLA~RKL~PALf~L~~~g~Lp~~~~Iig~aR~~~s----~e~fr~~~~~~~~~~~~~~~~~~~f~~~~~Y   96 (203)
T d1qkia1          21 HIFIIMGASGDLAKKKIYPTIWWLFRDGLLPENTFIVGYARSRLT----VADIRKQSEPFFKATPEEKLKLEDFFARNSY   96 (203)
T ss_dssp             EEEEEETTTSHHHHHTHHHHHHHHHHTTCSCSSEEEEEEBSSCCS----CHHHHHHHSCCTTCCGGGHHHHHHHHTTEEC
T ss_pred             cEEEEECcccHHHHhHHHHHHHHHHHcCCCCCCcEEEEEECCCCC----HHHHHHHHHHHHhhchhhHHHHHHHHHhhcc
Confidence            36899999999987543 333   232     4689999998731    111111111100           01357889


Q ss_pred             EeCCCCCCccHHHHhc---------CccEEEEeccc
Q 020104           66 FHADLSHPDGFDAAIA---------GCTGVLHVATP   92 (331)
Q Consensus        66 ~~~D~~~~~~~~~~~~---------~~d~Vih~a~~   92 (331)
                      +.+|+.|++++..+-+         ....|+++|-+
T Consensus        97 ~~~d~~~~~~~~~L~~~l~~~~~~~~~~rifYLAvp  132 (203)
T d1qkia1          97 VAGQYDDAASYQRLNSHMNALHLGSQANRLFYLALP  132 (203)
T ss_dssp             CBCCTTCHHHHHHHHHHHHHTTTTTTSEEEEEECSC
T ss_pred             ccCcCCChhhHHHHHHHHHHHhcCCCcceEEEEecC
Confidence            9999999987666522         34688998864

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.09  E-value=1.9  Score=32.73  Aligned_cols=34  Identities=24%  Similarity=0.325  Sum_probs=28.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHH-CCCeEEEEecC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLD-HGYSVTTTVRS   38 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~r~   38 (331)
                      .+++|+|-| .|.+|+++++.|.+ .|.+|++++-+
T Consensus        30 ~g~~vaIqG-~GnVG~~~a~~L~~e~Ga~vv~vsd~   64 (234)
T d1b26a1          30 KKATVAVQG-FGNVGQFAALLISQELGSKVVAVSDS   64 (234)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHHHCCEEEEEEET
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHhcCCceEEeecC
Confidence            467899998 79999999999975 59999877643

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=84.71  E-value=0.43  Score=39.14  Aligned_cols=32  Identities=25%  Similarity=0.276  Sum_probs=28.6

Q ss_pred             eEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      -|+|+| +|+-|..++.+|++.|++|.++-+..
T Consensus         4 ~VIVVG-sG~aG~v~A~rLaeaG~~VlvLEaG~   35 (367)
T d1n4wa1           4 PAVVIG-TGYGAAVSALRLGEAGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             eEEEeC-cCHHHHHHHHHHHHCcCeEEEEecCC
Confidence            378999 69999999999999999999998753

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.64  E-value=0.88  Score=33.14  Aligned_cols=33  Identities=21%  Similarity=0.093  Sum_probs=26.0

Q ss_pred             ceEEEecCcchhHHHHHHHHHHC-CCeEEEE-ecCC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDH-GYSVTTT-VRSE   39 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~-~r~~   39 (331)
                      +||.|+| +|.+|+..++.|... +.+|.++ +++.
T Consensus         2 iki~iIG-~G~~g~~~~~~l~~~~~~~i~ai~d~~~   36 (184)
T d1ydwa1           2 IRIGVMG-CADIARKVSRAIHLAPNATISGVASRSL   36 (184)
T ss_dssp             EEEEEES-CCTTHHHHHHHHHHCTTEEEEEEECSSH
T ss_pred             eEEEEEc-CCHHHHHHHHHHHhCCCCEEEEEEeCCc
Confidence            5899999 699999999999876 5677755 4554

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=84.35  E-value=0.75  Score=29.19  Aligned_cols=32  Identities=22%  Similarity=0.205  Sum_probs=26.4

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCCeEEEEecC
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRS   38 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~   38 (331)
                      |||||.| +|-=-.+|+..|.+..++|+++--+
T Consensus         1 MkVLviG-sGgREHAia~~l~~s~~~v~~~pGN   32 (90)
T d1vkza2           1 VRVHILG-SGGREHAIGWAFAKQGYEVHFYPGN   32 (90)
T ss_dssp             CEEEEEE-CSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEEC-CCHHHHHHHHHHhcCCCeEEEecCC
Confidence            5899999 5777889999999988998876433

>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Pyrococcus abyssi [TaxId: 29292]

Probab=84.35  E-value=0.41  Score=39.97  Aligned_cols=33  Identities=24%  Similarity=0.134  Sum_probs=24.6

Q ss_pred             ceEEEecC------cchhH---HHHHHHHHHCCCeEEEEecC
Q 020104            6 GRVCVTGG------TGFIA---SWLIMRLLDHGYSVTTTVRS   38 (331)
Q Consensus         6 ~~ilVtGa------tG~iG---~~l~~~L~~~g~~V~~~~r~   38 (331)
                      ||||+++.      +|.+|   .+|+++|.+.||+|.++...
T Consensus         1 MkIl~~~~~~pP~~~GG~~~~~~~La~~L~~~Gh~V~Vvtp~   42 (437)
T d2bisa1           1 MKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTPS   42 (437)
T ss_dssp             CEEEEECSCCTTCCSSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred             CEEEEECCccCCcccCCHHHHHHHHHHHHHHcCCEEEEEecC
Confidence            57888553      34444   67899999999999988743

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=84.26  E-value=0.43  Score=35.77  Aligned_cols=32  Identities=22%  Similarity=0.191  Sum_probs=24.6

Q ss_pred             ceEEEecCcchhHH-----HHHHHHHHCCCeEEEEec
Q 020104            6 GRVCVTGGTGFIAS-----WLIMRLLDHGYSVTTTVR   37 (331)
Q Consensus         6 ~~ilVtGatG~iG~-----~l~~~L~~~g~~V~~~~r   37 (331)
                      |+++|||-...+|+     +|+..|.++|++|.+++-
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~   38 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP   38 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECc
Confidence            68999994336665     677788899999988753

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.09  E-value=0.27  Score=36.34  Aligned_cols=38  Identities=16%  Similarity=0.117  Sum_probs=32.1

Q ss_pred             CCCCCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      |....++|+|.|| |..|..-+.+|.+.|.+|.++.+..
T Consensus         1 m~~~~~~VvIIGg-GpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           1 LETHNTRLCIVGS-GPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             CEEEEEEEEEECC-SHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             CCcccceEEEECC-CHHHHHHHHHHHHcCCcEEEEEeec
Confidence            5555678999996 9999999999999999999887654

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=83.93  E-value=1.9  Score=31.64  Aligned_cols=32  Identities=25%  Similarity=0.355  Sum_probs=24.7

Q ss_pred             CceEEEecCcchhHHHHHHHHHHCC-----CeEEEEec
Q 020104            5 KGRVCVTGGTGFIASWLIMRLLDHG-----YSVTTTVR   37 (331)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-----~~V~~~~r   37 (331)
                      ++||.|=| -|-||+.+.+.+++++     .+|.++.-
T Consensus         2 ~ikigING-FGRIGR~vlR~~~~~~~~~~~i~iv~Ind   38 (190)
T d1k3ta1           2 PIKVGING-FGRIGRMVFQALCEDGLLGTEIDVVAVVD   38 (190)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHHTTCBTTTEEEEEEEE
T ss_pred             CeEEEEEC-CChHHHHHHHHHHHcCCCCCCeEEEEEec
Confidence            47999999 6999999999998764     34555443

>d1q7ea_ c.123.1.1 (A:) Hypothetical protein YfdW {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: Hypothetical protein YfdW
species: Escherichia coli [TaxId: 562]

Probab=82.94  E-value=2.8  Score=34.74  Aligned_cols=81  Identities=16%  Similarity=0.080  Sum_probs=45.6

Q ss_pred             EecCcchh-HHHHHHHHHHCCCeEEEEecCC-CCc-ccCC--cccc-ccccCCCCCCCcEEEEeCCCCCCc---cHHHHh
Q 020104           10 VTGGTGFI-ASWLIMRLLDHGYSVTTTVRSE-LDP-EHRN--SKDL-SFLKNLPGASERLRIFHADLSHPD---GFDAAI   80 (331)
Q Consensus        10 VtGatG~i-G~~l~~~L~~~g~~V~~~~r~~-~~~-~~~~--~~~~-~~~~~~~~~~~~~~~~~~D~~~~~---~~~~~~   80 (331)
                      |+=-+.++ |-...+.|++.|.+|+-+-+.. ... +...  .... ....  ...+.+-+.+..|+.+++   .+.+++
T Consensus        10 Vld~~~~~agp~~~~~Lad~GAeVIkvE~p~~gd~~R~~~~~~~~~~s~~~--~~~nr~K~si~lDL~~~~g~~~~~~Li   87 (417)
T d1q7ea_          10 VLDFTGVQSGPSCTQMLAWFGADVIKIERPGVGDVTRHQLRDIPDIDALYF--TMLNSNKRSIELNTKTAEGKEVMEKLI   87 (417)
T ss_dssp             EEECCCTTHHHHHHHHHHHTTCEEEEEECTTTCCGGGTTTCSSTTSCCHHH--HTTCTTCEEEECCTTSHHHHHHHHHHH
T ss_pred             EEEcCChhHHHHHHHHHHHhCCeEEEECCCCCCCchhccCCCCCCCccHHH--HHhCCCCeEEEEeCcCHHHHHHHHHHH
Confidence            33444555 4455556677899999887532 000 0000  0000 0000  011245678999998875   555777


Q ss_pred             cCccEEEEeccc
Q 020104           81 AGCTGVLHVATP   92 (331)
Q Consensus        81 ~~~d~Vih~a~~   92 (331)
                      +++|+||++-.+
T Consensus        88 ~~aDv~i~n~~p   99 (417)
T d1q7ea_          88 READILVENFHP   99 (417)
T ss_dssp             HHCSEEEECCCC
T ss_pred             hcCcccEeccCC
Confidence            899999998654

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=82.15  E-value=1  Score=36.75  Aligned_cols=96  Identities=20%  Similarity=0.180  Sum_probs=54.9

Q ss_pred             EecCcchhHHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCc-cHHHHhcCccEEEE
Q 020104           10 VTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPD-GFDAAIAGCTGVLH   88 (331)
Q Consensus        10 VtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~d~Vih   88 (331)
                      +.+|+|.+|-.|+    +++.+|+++.-++     +..+..+.-... ....+++++.+|..+.- ........+|+|| 
T Consensus       219 LycG~G~fsl~La----~~~~~V~gvE~~~-----~ai~~A~~na~~-n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vi-  287 (358)
T d1uwva2         219 LFCGMGNFTLPLA----TQAASVVGVEGVP-----ALVEKGQQNARL-NGLQNVTFYHENLEEDVTKQPWAKNGFDKVL-  287 (358)
T ss_dssp             ESCTTTTTHHHHH----TTSSEEEEEESCH-----HHHHHHHHHHHH-TTCCSEEEEECCTTSCCSSSGGGTTCCSEEE-
T ss_pred             ecccccccchhcc----ccccEEEeccCcH-----HHHHHHHHhHHh-cccccceeeecchhhhhhhhhhhhccCceEE-
Confidence            5688999998865    4567999998766     221211111111 11267899999987642 2222234579887 


Q ss_pred             ecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCccEEEEecc
Q 020104           89 VATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKRVVYTSS  133 (331)
Q Consensus        89 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~SS  133 (331)
                          .++.....            ..+++.+.+.+ .+++||+|-
T Consensus       288 ----lDPPR~G~------------~~~~~~l~~~~-~~~ivYVSC  315 (358)
T d1uwva2         288 ----LDPARAGA------------AGVMQQIIKLE-PIRIVYVSC  315 (358)
T ss_dssp             ----ECCCTTCC------------HHHHHHHHHHC-CSEEEEEES
T ss_pred             ----eCCCCccH------------HHHHHHHHHcC-CCEEEEEeC
Confidence                33222111            12344444455 689999984

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=82.13  E-value=0.76  Score=35.14  Aligned_cols=32  Identities=22%  Similarity=0.236  Sum_probs=29.4

Q ss_pred             eEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      -|+|+|| |..|...+..|.++|++|.++.+++
T Consensus         4 DViIIGa-G~aGl~aA~~la~~G~~V~liEk~~   35 (251)
T d2i0za1           4 DVIVIGG-GPSGLMAAIGAAEEGANVLLLDKGN   35 (251)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            5899995 9999999999999999999998876

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=81.87  E-value=8  Score=28.54  Aligned_cols=94  Identities=18%  Similarity=0.130  Sum_probs=58.0

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCC---eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCC----------
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGY---SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADL----------   70 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~----------   70 (331)
                      ...||.|.| -|.-|.+++.+|.+.+.   +.++++-+.        +.+....      ....+..+.-          
T Consensus        14 ~~~ki~ViG-vGGaG~n~v~~l~~~~~~~v~~iainTD~--------~~L~~~~------~~~ki~ig~~~t~g~Gag~~   78 (209)
T d2vapa1          14 TKAKITVVG-CGGAGNNTITRLKMEGIEGAKTVAINTDA--------QQLIRTK------ADKKILIGKKLTRGLGAGGN   78 (209)
T ss_dssp             TCCCEEEEE-EHHHHHHHHHHHHHHTCTTEEEEEEESBH--------HHHHTSC------CSEEEECCTTTTTTBCCTTC
T ss_pred             cCCcEEEEE-eCChHHHHHHHHHHcCCCceEEEEEeCCH--------HHHhcCC------cchhcccccccccccccccc
Confidence            345899999 69999999999998864   344554443        2222111      1122222221          


Q ss_pred             ---------CCCccHHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcC
Q 020104           71 ---------SHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSG  123 (331)
Q Consensus        71 ---------~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~  123 (331)
                               .+.+.+.+.+.+.|.||-+||...-.           --.++..+++.+++.+
T Consensus        79 p~~g~~aa~e~~~~I~~~l~~~d~vfi~AGlGGGT-----------Gsgaapvia~~ake~g  129 (209)
T d2vapa1          79 PKIGEEAAKESAEEIKAAIQDSDMVFITCGLGGGT-----------GTGSAPVVAEISKKIG  129 (209)
T ss_dssp             HHHHHHHHHHTHHHHHHHHTTCSEEEEEEETTSSH-----------HHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCc-----------cccHHHHHHHHHHHcC
Confidence                     11236777788999999999875421           1223456888888887

>d2vjma1 c.123.1.1 (A:2-428) Formyl-CoA transferase {Oxalobacter formigenes [TaxId: 847]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: Formyl-CoA transferase
species: Oxalobacter formigenes [TaxId: 847]

Probab=80.91  E-value=3.3  Score=34.42  Aligned_cols=79  Identities=13%  Similarity=0.034  Sum_probs=47.1

Q ss_pred             eEEEecCcchh-HHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCC--------CCCCCcEEEEeCCCCCCc---
Q 020104            7 RVCVTGGTGFI-ASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNL--------PGASERLRIFHADLSHPD---   74 (331)
Q Consensus         7 ~ilVtGatG~i-G~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~D~~~~~---   74 (331)
                      |||=.+  .++ |-...+.|++.|.+|+-+-+...     ...........        ...+.+-+.+..|+.+++   
T Consensus         8 rVld~~--~~~agp~~~~~LadlGAeVIkvE~p~~-----gd~~R~~~~~~~~~~s~~~~~~nr~K~si~lDL~~~~g~~   80 (427)
T d2vjma1           8 NVLDFT--HVQAGPACTQMMGFLGANVIKIERRGS-----GDMTRGWLQDKPNVDSLYFTMFNCNKRSIELDMKTPEGKE   80 (427)
T ss_dssp             EEEECC--CTTHHHHHHHHHHHTTCEEEEEECTTT-----CSGGGGSSCSSTTSCCHHHHTTCSSCEEEECCTTSHHHHH
T ss_pred             EEEEcC--ChhHHHHHHHHHHHhCCeEEEECCCCC-----CCcccccCCCCCCCccHHHHHhCCCCeEEEEeCcCHHHHH
Confidence            444433  555 55555667788999998875420     00111100000        011245678999998875   


Q ss_pred             cHHHHhcCccEEEEeccc
Q 020104           75 GFDAAIAGCTGVLHVATP   92 (331)
Q Consensus        75 ~~~~~~~~~d~Vih~a~~   92 (331)
                      .+.++++.+|+||++-.+
T Consensus        81 ~~~~Lv~~aDv~i~n~~p   98 (427)
T d2vjma1          81 LLEQMIKKADVMVENFGP   98 (427)
T ss_dssp             HHHHHHHHCSEEEECCST
T ss_pred             HHHHHHHhCCeeeECCCc
Confidence            566777899999998653

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=80.88  E-value=0.84  Score=34.07  Aligned_cols=31  Identities=23%  Similarity=0.073  Sum_probs=28.1

Q ss_pred             EEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            8 VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      |+|+|| |+.|...+.++.+.|.+|.++.++.
T Consensus         5 vvVIG~-G~aG~~aA~~a~~~G~kV~iiE~~~   35 (217)
T d1gesa1           5 YIAIGG-GSGGIASINRAAMYGQKCALIEAKE   35 (217)
T ss_dssp             EEEECC-SHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             EEEECC-CHHHHHHHHHHHHCCCEEEEEeccC
Confidence            789996 9999999999999999999997754

>d1x74a1 c.123.1.1 (A:2-360) 2-methylacyl-CoA racemase Mcr {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: 2-methylacyl-CoA racemase Mcr
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.62  E-value=2.1  Score=34.82  Aligned_cols=69  Identities=22%  Similarity=0.106  Sum_probs=42.2

Q ss_pred             cchh-HHHHHHHHHHCCCeEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCCCCCCc---cHHHHhcCccEEEEe
Q 020104           14 TGFI-ASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHADLSHPD---GFDAAIAGCTGVLHV   89 (331)
Q Consensus        14 tG~i-G~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~---~~~~~~~~~d~Vih~   89 (331)
                      |.++ |....+.|++.|.+|+=+-+...    ........      ...+-+.+..|+.+++   .+.++++++|+||++
T Consensus        13 ~~~~agp~~~~~lad~GA~VikvE~p~~----~~~~~~~~------~nr~K~si~lDl~~~~g~~~~~~Lv~~aDv~i~n   82 (359)
T d1x74a1          13 AGIGPGPHAAMILGDLGADVVRIDRPSS----VDGISRDA------MLRNRRIVTADLKSDQGLELALKLIAKADVLIEG   82 (359)
T ss_dssp             CCSTHHHHHHHHHHHTTCEEEEEECC---------CCCCG------GGCSCEEEECCTTSHHHHHHHHHHHTTCSEEEEC
T ss_pred             CCchHHHHHHHHHHHhCCEEEEECCCCC----CCchhhhh------hhCCCeEEEEeCcCHHHHHHHHHHHhhCCEEEec
Confidence            3445 55555566778999998755431    11111111      1245578889998875   566677899999987


Q ss_pred             ccc
Q 020104           90 ATP   92 (331)
Q Consensus        90 a~~   92 (331)
                      -.+
T Consensus        83 ~~p   85 (359)
T d1x74a1          83 YRP   85 (359)
T ss_dssp             SCT
T ss_pred             CCC
Confidence            653

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=80.55  E-value=0.6  Score=36.04  Aligned_cols=32  Identities=22%  Similarity=0.226  Sum_probs=29.5

Q ss_pred             eEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            7 RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      .|+|+|| |--|...+..|.+.|.+|.++.+++
T Consensus         6 DViIIGa-G~aGl~aA~~la~~G~~V~vlEk~~   37 (253)
T d2gqfa1           6 ENIIIGA-GAAGLFCAAQLAKLGKSVTVFDNGK   37 (253)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             cEEEECc-CHHHHHHHHHHHHCCCcEEEEecCC
Confidence            5999995 9999999999999999999998876

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=80.49  E-value=2.2  Score=30.76  Aligned_cols=33  Identities=30%  Similarity=0.252  Sum_probs=24.4

Q ss_pred             CCceEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Q 020104            4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSE   39 (331)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (331)
                      ++++||..|+ | .|+ .+..|+++|++|++++.++
T Consensus        20 ~~~rvLd~GC-G-~G~-~a~~la~~G~~V~gvD~S~   52 (201)
T d1pjza_          20 PGARVLVPLC-G-KSQ-DMSWLSGQGYHVVGAELSE   52 (201)
T ss_dssp             TTCEEEETTT-C-CSH-HHHHHHHHCCEEEEEEECH
T ss_pred             CCCEEEEecC-c-CCH-HHHHHHHcCCceEeecccH
Confidence            4578999995 2 233 4446777899999999876

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=80.10  E-value=6.6  Score=28.61  Aligned_cols=92  Identities=14%  Similarity=0.104  Sum_probs=57.0

Q ss_pred             ceEEEecCcchhHHHHHHHHHHCCC---eEEEEecCCCCcccCCccccccccCCCCCCCcEEEEeCC-CC----------
Q 020104            6 GRVCVTGGTGFIASWLIMRLLDHGY---SVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFHAD-LS----------   71 (331)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-~~----------   71 (331)
                      +||.|.| -|.-|.+++.+|.+.+.   +.++++-+.        +.+....      ....+..+. ..          
T Consensus         1 ~kI~viG-vGGaG~n~v~~l~~~~~~~v~~iainTD~--------~~L~~~~------a~~ki~iG~~~t~G~G~g~~p~   65 (194)
T d1w5fa1           1 LKIKVIG-VGGAGNNAINRMIEIGIHGVEFVAVNTDL--------QVLEASN------ADVKIQIGENITRGLGAGGRPE   65 (194)
T ss_dssp             CCEEEEE-EHHHHHHHHHHHHHHCCTTEEEEEEESCH--------HHHHTCC------CSEEEECCTTTTTTSCCTTCHH
T ss_pred             CeEEEEE-eCchHHHHHHHHHHcCCCceEEEEEcCCH--------HHHhcCC------cceEEecccccCCCcccccCch
Confidence            3799999 59999999999998763   344444443        2222111      122222221 11          


Q ss_pred             --------CCccHHHHhcCccEEEEecccCCCCCCChhhHHHHHHHHHHHHHHHHHHhcC
Q 020104           72 --------HPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSG  123 (331)
Q Consensus        72 --------~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~  123 (331)
                              +.+.+.+.+.+.|.||-+|+...-.           --.++-.+++.|++.+
T Consensus        66 ~g~~aa~e~~~~I~~~l~~~d~vfi~AGlGGgT-----------GtgaapviA~~ake~g  114 (194)
T d1w5fa1          66 IGEQAALESEEKIREVLQDTHMVFITAGFGGGT-----------GTGASPVIAKIAKEMG  114 (194)
T ss_dssp             HHHHHHHHTHHHHHHHTTTCSEEEEEEETTSSH-----------HHHHHHHHHHHHHHTT
T ss_pred             hhHhHHHHHHHHHHHHhcCCCeEEEEEecCCCc-----------ccchHHHHHHHHHHcC
Confidence                    1246677788999999999875522           1234567888888887