BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020105
(331 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IU5|A Chain A, Crystal Structure Of The First Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 245 LPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSAC-ILTFYRDLLLLFNNAIV 303
L LF R K + +Y E+V Q +DL IQ +++ Y +LT D LLFNNA
Sbjct: 28 LCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLT--ADFQLLFNNAKS 85
Query: 304 YFPKASLESEAAHQLRNL 321
Y+ S E +AA +L +L
Sbjct: 86 YYKPDSPEYKAACKLWDL 103
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
Length = 174
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 227 ESEPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSAC 286
+ E L R+L ++ H P F + ++ +Y ++++ +DL T++ RV+R Y
Sbjct: 73 DYEGLKRVLRSLQAHKMAWP--FLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEK- 129
Query: 287 ILTFYRDLLLLFNNAIVYFPKASLESEAAHQLRNLVSNEIKRTK 330
+ F D+ +F+N Y P S + A L + ++K K
Sbjct: 130 LTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFK 173
>pdb|3QZS|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
pdb|3QZS|B Chain B, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
Length = 115
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Query: 217 GGHIIEGTYAESEPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQT 276
G + T + E L R+L ++ H P F + ++ +Y ++++ +DL T++
Sbjct: 4 GSVLTPLTEKDYEGLKRVLRSLQAHKMAWP--FLEPVDPNDAPDYYGVIKEPMDLATMEE 61
Query: 277 RVERGSYSACILTFYRDLLLLFNNAIVYFPKASLESEAAHQLRNLVSNEIKRTK 330
RV+R Y + F D+ +F+N Y P S + A L + ++K K
Sbjct: 62 RVQRRYYEK-LTEFVADMTAIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFK 114
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With
Histone H4k12ac Peptide
Length = 174
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 227 ESEPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSAC 286
+ E L R+L ++ H P F + ++ +Y ++++ +DL T++ RV+R Y
Sbjct: 73 DYEGLKRVLRSLQAHKMAWP--FLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEK- 129
Query: 287 ILTFYRDLLLLFNNAIVYFPKASLESEAAHQLRNLVSNEIKRTK 330
+ F D+ +F+N Y P S + A L + ++K K
Sbjct: 130 LTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFK 173
>pdb|3I3J|A Chain A, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|B Chain B, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|C Chain C, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|D Chain D, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|E Chain E, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|F Chain F, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|G Chain G, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|H Chain H, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|I Chain I, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|J Chain J, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|K Chain K, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|L Chain L, Crystal Structure Of The Bromodomain Of Human Ep300
Length = 124
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 260 EYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASLESEAAHQLR 319
+Y ++V+ +DL TI+ +++ G Y + D+ L+FNNA +Y K S + +L
Sbjct: 51 DYFDIVKSPMDLSTIKRKLDTGQYQEP-WQYVDDIWLMFNNAWLYNRKTSRVYKYCSKLS 109
Query: 320 NLVSNEI 326
+ EI
Sbjct: 110 EVFEQEI 116
>pdb|3QZT|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form Ii
Length = 115
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Query: 217 GGHIIEGTYAESEPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQT 276
G + T + E L R+L ++ H P F + ++ +Y ++++ +DL T++
Sbjct: 4 GSVLTPLTEKDYEGLKRVLRSLQAHKMAWP--FLEPVDPNDAPDYYGVIKEPMDLATMEE 61
Query: 277 RVERGSYSACILTFYRDLLLLFNNAIVYFPKASLESEAAHQLRNLVSNEIKRTK 330
RV+R Y + F D+ +F+N Y P S + A L + ++K K
Sbjct: 62 RVQRRYYEK-LTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFK 114
>pdb|1JSP|B Chain B, Nmr Structure Of Cbp Bromodomain In Complex With P53
Peptide
pdb|2D82|A Chain A, Target Structure-Based Discovery Of Small Molecules That
Block Human P53 And Creb Binding Protein (Cbp)
Association
pdb|2RNY|A Chain A, Complex Structures Of Cbp Bromodomain With H4 Ack20
Peptide
pdb|2L84|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule J28
pdb|2L85|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule Of Hbs
Length = 121
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 260 EYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASLESEAAHQLR 319
+Y ++V+ +DL TI+ +++ G Y + D+ L+FNNA +Y K S + +L
Sbjct: 48 DYFDIVKNPMDLSTIKRKLDTGQYQEP-WQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLA 106
Query: 320 NLVSNEI 326
+ EI
Sbjct: 107 EVFEQEI 113
>pdb|3DWY|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3DWY|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3P1C|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1C|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1D|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1D|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1E|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1E|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1F|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3P1F|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3SVH|A Chain A, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3SVH|B Chain B, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|4A9K|A Chain A, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
pdb|4A9K|B Chain B, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
Length = 119
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 260 EYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASLESEAAHQLR 319
+Y ++V+ +DL TI+ +++ G Y + D+ L+FNNA +Y K S + +L
Sbjct: 46 DYFDIVKNPMDLSTIKRKLDTGQYQEP-WQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLA 104
Query: 320 NLVSNEI 326
+ EI
Sbjct: 105 EVFEQEI 111
>pdb|3UV2|A Chain A, Crystal Structure Of The Bromodomain Of Human
Nucleosome-Remodeling Factor Subunit Bptf
Length = 126
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 227 ESEPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSAC 286
+ E L R+L ++ H P F + ++ +Y ++++ +DL T++ RV+R Y
Sbjct: 21 DYEGLKRVLRSLQAHKMAWP--FLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEK- 77
Query: 287 ILTFYRDLLLLFNNAIVYFPKASLESEAAHQLRNLVSNEIKRTK 330
+ F D+ +F+N Y P S + A L + ++K K
Sbjct: 78 LTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFK 121
>pdb|2R0V|A Chain A, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|B Chain B, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|C Chain C, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
Length = 346
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 22/126 (17%)
Query: 206 GTERKRGSAAAGGHI---IEGTYAESEPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYK 262
TE+K A G ++ SEP + L+D E EY
Sbjct: 191 ATEKKINQALLGASSPKNLDDKVKLSEPFMELVD------------------KDELPEYY 232
Query: 263 ELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASLESEAAHQLRNLV 322
E+V + L ++ +E G YS I F D+LL+F NA ++ ++L + A L N
Sbjct: 233 EIVHSPMALSIVKQNLEIGQYSK-IYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYF 291
Query: 323 SNEIKR 328
+ I++
Sbjct: 292 NYLIQK 297
>pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
pdb|2R10|B Chain B, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
Length = 361
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 22/126 (17%)
Query: 206 GTERKRGSAAAGGHI---IEGTYAESEPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYK 262
TE+K A G ++ SEP + L+D E EY
Sbjct: 206 ATEKKINQALLGASSPKNLDDKVKLSEPFMELVD------------------KDELPEYY 247
Query: 263 ELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASLESEAAHQLRNLV 322
E+V + L ++ +E G YS I F D+LL+F NA ++ ++L + A L N
Sbjct: 248 EIVHSPMALSIVKQNLEIGQYSK-IYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYF 306
Query: 323 SNEIKR 328
+ I++
Sbjct: 307 NYLIQK 312
>pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide
Length = 121
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 237 LIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLL 296
L NH F + + +E +Y + +++ +DL T++ ++E Y + F D L
Sbjct: 22 LTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQK-MEDFIYDARL 80
Query: 297 LFNNAIVYFPKASLESEAAHQLRNLVSNEIK 327
+FNN +Y + + + A++L +N++K
Sbjct: 81 VFNNCRMYNGENTSYYKYANRLEKFFNNKVK 111
>pdb|2KTB|B Chain B, Solution Structure Of The Second Bromodomain Of Human
Polybr Complex With An Acetylated Peptide From Histone 3
Length = 121
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 248 LFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVY 304
LF++ + +Y ++++ +DL+TI R++ GSY + I +D+ LL NA Y
Sbjct: 35 LFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKS-IHAMAKDIDLLAKNAKTY 90
>pdb|3LJW|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
pdb|3LJW|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
Length = 120
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 248 LFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVY 304
LF++ + +Y ++++ +DL+TI R++ GSY + I +D+ LL NA Y
Sbjct: 34 LFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKS-IHAMAKDIDLLAKNAKTY 89
>pdb|3G0L|A Chain A, Crystal Structure Of Human Bromodomain Adjacent To Zinc
Finger Domain 2b (Baz2b)
pdb|3Q2F|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With A Triazolo Ligand
pdb|4IR3|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-amino-1-(pyrimidin-2-yl)indolizin-3-yl]ethanone
(gsk2833282a)
pdb|4IR4|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-(morpholin-4-yl)-1-(pyridin-2-yl)indolizin-3-
yl]ethanone (gsk2834113a)
pdb|4IR5|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(hydroxymethyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2847449a)
pdb|4IR6|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(methylsulfonyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2838097a)
Length = 117
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 234 LLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRD 293
+L + TH P L LK YK+++++ +D TI+ ++ G Y + TF D
Sbjct: 21 ILTEMETHEDAWPFLLPVNLKLVPG--YKKVIKKPMDFSTIREKLSSGQYPN-LETFALD 77
Query: 294 LLLLFNNAIVYFPKASLESEAAHQLR 319
+ L+F+N + S A H +R
Sbjct: 78 VRLVFDNCETFNEDDSDIGRAGHNMR 103
>pdb|3HMF|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 248 LFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVY 304
LF++ + +Y ++++ +DL+TI R++ GSY + I +D+ LL NA Y
Sbjct: 32 LFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKS-IHAMAKDIDLLAKNAKTY 87
>pdb|2E7O|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Adjacent To Zinc Finger Domain 2b
Length = 112
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 234 LLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRD 293
+L + TH P L LK YK+++++ +D TI+ ++ G Y + TF D
Sbjct: 18 ILTEMETHEDAWPFLLPVNLKLVPG--YKKVIKKPMDFSTIREKLSSGQYPN-LETFALD 74
Query: 294 LLLLFNNAIVYFPKASLESEAAHQLR 319
+ L+F+N + S A H +R
Sbjct: 75 VRLVFDNCETFNEDDSDIGRAGHNMR 100
>pdb|2R0Y|A Chain A, Structure Of The Rsc4 Tandem Bromodomain In Complex With
An Acetylated H3 Peptide
Length = 311
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 249 FERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKA 308
F + E EY E+V L ++ +E G YS I F D LL+F NA ++ +
Sbjct: 184 FXELVDKDELPEYYEIVHSPXALSIVKQNLEIGQYSK-IYDFIIDXLLVFQNAHIFNDPS 242
Query: 309 SLESEAAHQLRNLVSNEIKR 328
+L + A L N + I++
Sbjct: 243 ALIYKDATTLTNYFNYLIQK 262
>pdb|2R0S|A Chain A, Crystal Structure Of The Rsc4 Tandem Bromodomain
Length = 285
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 249 FERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKA 308
F + E EY E+V L ++ +E G YS I F D LL+F NA ++ +
Sbjct: 178 FXELVDKDELPEYYEIVHSPXALSIVKQNLEIGQYSK-IYDFIIDXLLVFQNAHIFNDPS 236
Query: 309 SLESEAAHQLRNLVSNEIKR 328
+L + A L N + I++
Sbjct: 237 ALIYKDATTLTNYFNYLIQK 256
>pdb|3Q2E|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Bromodomain And Wd Repeat-Containing Protein 1 Isoform A
(Wdr9)
Length = 123
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 257 ESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFP 306
E +Y++++ +D T++ ++ G+Y + L F +D+ L+F+NA Y P
Sbjct: 39 EYPDYRDIIDTPMDFGTVRETLDAGNYDS-PLEFCKDIRLIFSNAKAYTP 87
>pdb|3MB3|A Chain A, Crystal Structure Of The Second Bromodomain Of Pleckstrin
Homology Domain Interacting Protein (Phip)
Length = 135
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 257 ESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFP 306
E +Y++++ +D T++ +E G+Y + + +D+ L+F+N+ Y P
Sbjct: 50 EYPDYRDIIDTPMDFATVRETLEAGNYES-PMELCKDVRLIFSNSKAYTP 98
>pdb|3MQM|A Chain A, Crystal Structure Of The Bromodomain Of Human Ash1l
pdb|3MQM|B Chain B, Crystal Structure Of The Bromodomain Of Human Ash1l
Length = 126
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 256 QESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASLESEAA 315
+++ +Y E + +DL TI+ ++ G Y + F D+L +F NA Y+ + S
Sbjct: 43 KKNADYYEKISDPLDLITIEKQILTGYYKT-VEAFDADMLKVFRNAEKYYGRKSPVGRDV 101
Query: 316 HQLRNLVSN 324
+LR N
Sbjct: 102 CRLRKAYYN 110
>pdb|1S4B|P Chain P, Crystal Structure Of Human Thimet Oligopeptidase
Length = 674
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 199 SSASFGI--GTERKRGSAAAGGHIIEGTYAESEPLIRLLDLIRTHNHHLPSLFERRLKSQ 256
S A F + GT +R A ++E E EPL+R+ RT + L E+ ++S+
Sbjct: 469 SQAEFAMFSGTHVERDFVEAPSQMLENWVWEQEPLLRMSRHYRTGSAVPRELLEKLIESR 528
Query: 257 ESN 259
++N
Sbjct: 529 QAN 531
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,932,108
Number of Sequences: 62578
Number of extensions: 330847
Number of successful extensions: 648
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 630
Number of HSP's gapped (non-prelim): 31
length of query: 331
length of database: 14,973,337
effective HSP length: 99
effective length of query: 232
effective length of database: 8,778,115
effective search space: 2036522680
effective search space used: 2036522680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)